RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11591
(220 letters)
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex;
1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Length = 190
Score = 138 bits (350), Expect = 2e-41
Identities = 65/178 (36%), Positives = 89/178 (50%), Gaps = 2/178 (1%)
Query: 16 SLREHIMIHTGERPHVCHVCSKSFRNRGKLNVHYKRVHERIRTHQCNHCGRAFSDKSNLT 75
S + GE+P+ C C KSF L H +R H + ++C CG++FSDK +LT
Sbjct: 8 SSVAQAALEPGEKPYACPECGKSFSRSDHLAEH-QRTHTGEKPYKCPECGKSFSDKKDLT 66
Query: 76 VHIRTHTDEKKYMCELCGAEFAQWATLYNHKFTHNDIK-FKCNYCEKVYNNPSNLQRHIK 134
H RTHT EK Y C CG F+Q A L H+ TH K + C C K ++ ++L+ H +
Sbjct: 67 RHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQR 126
Query: 135 THTDNSLYICEICGKDFGTARYLKRHKDTHNSVNTFVCEVCNTGFKVKKHLTQHYKSH 192
THT Y C CGK F L H+ TH + C C F + L H ++H
Sbjct: 127 THTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTH 184
Score = 132 bits (336), Expect = 2e-39
Identities = 67/164 (40%), Positives = 88/164 (53%), Gaps = 2/164 (1%)
Query: 2 FKCPQCGALLKNIWSLREHIMIHTGERPHVCHVCSKSFRNRGKLNVHYKRVHERIRTHQC 61
+ CP+CG L EH HTGE+P+ C C KSF ++ L H +R H + ++C
Sbjct: 22 YACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRH-QRTHTGEKPYKC 80
Query: 62 NHCGRAFSDKSNLTVHIRTHTDEKKYMCELCGAEFAQWATLYNHKFTHNDIK-FKCNYCE 120
CG++FS ++NL H RTHT EK Y C CG F+Q A L H+ TH K +KC C
Sbjct: 81 PECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECG 140
Query: 121 KVYNNPSNLQRHIKTHTDNSLYICEICGKDFGTARYLKRHKDTH 164
K ++ NL H +THT Y C CGK F L H+ TH
Sbjct: 141 KSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTH 184
Score = 117 bits (295), Expect = 4e-33
Identities = 54/137 (39%), Positives = 74/137 (54%), Gaps = 2/137 (1%)
Query: 2 FKCPQCGALLKNIWSLREHIMIHTGERPHVCHVCSKSFRNRGKLNVHYKRVHERIRTHQC 61
+KCP+CG + L H HTGE+P+ C C KSF R L H +R H + + C
Sbjct: 50 YKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAH-QRTHTGEKPYAC 108
Query: 62 NHCGRAFSDKSNLTVHIRTHTDEKKYMCELCGAEFAQWATLYNHKFTHNDIK-FKCNYCE 120
CG++FS ++L H RTHT EK Y C CG F++ L+ H+ TH K +KC C
Sbjct: 109 PECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECG 168
Query: 121 KVYNNPSNLQRHIKTHT 137
K ++ L H +THT
Sbjct: 169 KSFSRRDALNVHQRTHT 185
Score = 89.8 bits (224), Expect = 1e-22
Identities = 40/127 (31%), Positives = 56/127 (44%), Gaps = 1/127 (0%)
Query: 67 AFSDKSNLTVHIRTHTDEKKYMCELCGAEFAQWATLYNHKFTHNDIK-FKCNYCEKVYNN 125
+ S+ EK Y C CG F++ L H+ TH K +KC C K +++
Sbjct: 2 SEFGSSSSVAQAALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSD 61
Query: 126 PSNLQRHIKTHTDNSLYICEICGKDFGTARYLKRHKDTHNSVNTFVCEVCNTGFKVKKHL 185
+L RH +THT Y C CGK F L+ H+ TH + C C F HL
Sbjct: 62 KKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHL 121
Query: 186 TQHYKSH 192
H ++H
Sbjct: 122 RAHQRTH 128
Score = 84.0 bits (209), Expect = 2e-20
Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 2 FKCPQCGALLKNIWSLREHIMIHTGERPHVCHVCSKSFRNRGKLNVHYKRVHERIRTHQC 61
+ CP+CG + LR H HTGE+P+ C C KSF L+ H +R H + ++C
Sbjct: 106 YACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTH-QRTHTGEKPYKC 164
Query: 62 NHCGRAFSDKSNLTVHIRTHTDEK 85
CG++FS + L VH RTHT +K
Sbjct: 165 PECGKSFSRRDALNVHQRTHTGKK 188
Score = 28.2 bits (64), Expect = 1.8
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 2 FKCPQCGALLKNIWSLREHIMIHTGERP 29
+KCP+CG +L H HTG++
Sbjct: 162 YKCPECGKSFSRRDALNVHQRTHTGKKT 189
>1tf6_A Protein (transcription factor IIIA); complex (transcription
regulation/DNA), RNA polymerase III, transcription
initiation, zinc finger protein; HET: DNA; 3.10A
{Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A
Length = 190
Score = 118 bits (298), Expect = 9e-34
Identities = 45/184 (24%), Positives = 71/184 (38%), Gaps = 14/184 (7%)
Query: 20 HIMIHTGERPHVCHV--CSKSFRNRGKLNVHYKRVHERIRTHQCNH--CGRAFSDKSNLT 75
+ + ++C C ++ KL H H + C C + F+ +LT
Sbjct: 3 EKALPVVYKRYICSFADCGAAYNKNWKLQAH-LCKHTGEKPFPCKEEGCEKGFTSLHHLT 61
Query: 76 VHIRTHTDEKKYMCE--LCGAEFAQWATLYNHKFTHNDIK---FKCNY--CEKVYNNPSN 128
H THT EK + C+ C F A + H ++IK + C++ C K + +
Sbjct: 62 RHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQ 121
Query: 129 LQRHIKTHTDNSLYIC--EICGKDFGTARYLKRHKDTHNSVNTFVCEVCNTGFKVKKHLT 186
L+ H +HT Y C E C K F LKRH+ H + C+ K
Sbjct: 122 LKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYL 181
Query: 187 QHYK 190
+H
Sbjct: 182 KHVA 185
Score = 116 bits (293), Expect = 6e-33
Identities = 51/178 (28%), Positives = 74/178 (41%), Gaps = 15/178 (8%)
Query: 2 FKC--PQCGALLKNIWSLREHIMIHTGERPHVCH--VCSKSFRNRGKLNVHYKRVHERIR 57
+ C CGA W L+ H+ HTGE+P C C K F + L H H +
Sbjct: 13 YICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRH-SLTHTGEK 71
Query: 58 THQCNH--CGRAFSDKSNLTVHIRTHTDEKK--YMCEL--CGAEFAQWATLYNHKFTHND 111
C+ C F+ K+N+ H + K Y+C CG F + L H+F+H
Sbjct: 72 NFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQ 131
Query: 112 IK-FKCN--YCEKVYNNPSNLQRHIKTHTDNSLYICEICGKDFGT-ARYLKRHKDTHN 165
++C C+K ++ PS L+RH K H + C T YLK + H
Sbjct: 132 QLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHVAECHQ 189
Score = 74.2 bits (183), Expect = 1e-16
Identities = 28/119 (23%), Positives = 44/119 (36%), Gaps = 10/119 (8%)
Query: 2 FKCPQ--CGALLKNIWSLREHIMIHTGER--PHVCHV--CSKSFRNRGKLNVHYKRVHER 55
F C C ++++H + +VCH C K+F+ +L VH + H +
Sbjct: 73 FTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVH-QFSHTQ 131
Query: 56 IRTHQCNH--CGRAFSDKSNLTVHIRTHTDEKKYMCELCGAEFAQWATLYNHKF-THND 111
++C H C + FS S L H + H + C W H H D
Sbjct: 132 QLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHVAECHQD 190
Score = 54.9 bits (133), Expect = 1e-09
Identities = 26/120 (21%), Positives = 39/120 (32%), Gaps = 29/120 (24%)
Query: 77 HIRTHTDEKKYMCELCGAEFAQWATLYNHKFTHNDIKFKCNYCEKVYNNPSNLQRHIKTH 136
K+Y+C C YN LQ H+ H
Sbjct: 3 EKALPVVYKRYICSFAD-------------------------CGAAYNKNWKLQAHLCKH 37
Query: 137 TDNSLYICE--ICGKDFGTARYLKRHKDTHNSVNTFVCE--VCNTGFKVKKHLTQHYKSH 192
T + C+ C K F + +L RH TH F C+ C+ F K ++ +H+
Sbjct: 38 TGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRF 97
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA
complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 155
Score = 108 bits (272), Expect = 3e-30
Identities = 47/152 (30%), Positives = 71/152 (46%), Gaps = 17/152 (11%)
Query: 2 FKCPQCGALLKNIWSLREHIM---IHTGERPHVCHVC-----SKSFRNRGKLNVHYKRVH 53
+ C + L HI IH + VCH + F+ + L VH R H
Sbjct: 4 CRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVH-MRRH 62
Query: 54 ERIRTHQCNH--CGRAFSDKSNLTVHIRTHTDEKKYMCE--LCGAEFAQWATLYNHKF-T 108
+ H+C C +++S NL H+R+HT EK YMCE C F+ + H+ T
Sbjct: 63 TGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRT 122
Query: 109 HNDIK-FKCNY--CEKVYNNPSNLQRHIKTHT 137
H++ K + C C K Y +PS+L++H+KT
Sbjct: 123 HSNEKPYVCKLPGCTKRYTDPSSLRKHVKTVH 154
Score = 98.4 bits (246), Expect = 2e-26
Identities = 41/153 (26%), Positives = 70/153 (45%), Gaps = 15/153 (9%)
Query: 27 ERPHVCHVCSKSFRNRGKLNVH--YKRVHERIRTHQCNHCG-----RAFSDKSNLTVHIR 79
E CS+ F ++ +L H + +H + C+ G R F + L VH+R
Sbjct: 1 ETDCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMR 60
Query: 80 THTDEKKYMC--ELCGAEFAQWATLYNHKFTHNDIK-FKCNY--CEKVYNNPSNLQRHIK 134
HT EK + C E C +++ L H +H K + C + C K ++N S+ +H
Sbjct: 61 RHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQN 120
Query: 135 -THTDNSLYICEI--CGKDFGTARYLKRHKDTH 164
TH++ Y+C++ C K + L++H T
Sbjct: 121 RTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTV 153
Score = 54.1 bits (131), Expect = 1e-09
Identities = 21/136 (15%), Positives = 39/136 (28%), Gaps = 51/136 (37%)
Query: 60 QCNHCGRAFSDKSNLTVHI---RTHTDEKKYMCELCGAEFAQWATLYNHKFTHNDIKFKC 116
+ + C + F + L HI H + K+++C G C
Sbjct: 5 RWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGG----------------------C 42
Query: 117 NYCEKVYNNPSNLQRHIKTHTDNSLYICEICGKDFGTARYLKRHKDTHNSVNTFVCEVCN 176
+ + + L H++ HT + C G C
Sbjct: 43 SRELRPFKAQYMLVVHMRRHTGEKPHKCTFEG--------------------------CR 76
Query: 177 TGFKVKKHLTQHYKSH 192
+ ++L H +SH
Sbjct: 77 KSYSRLENLKTHLRSH 92
Score = 34.5 bits (80), Expect = 0.009
Identities = 13/83 (15%), Positives = 26/83 (31%), Gaps = 26/83 (31%)
Query: 114 FKCNYCEKVYNNPSNLQRHIKT---HTDNSLYICEICGKDFGTARYLKRHKDTHNSVNTF 170
+ + C + +++ L HI + H + ++C G
Sbjct: 4 CRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGG---------------------- 41
Query: 171 VCEVCNTGFKVKKHLTQHYKSHS 193
C FK + L H + H+
Sbjct: 42 -CSRELRPFKAQYMLVVHMRRHT 63
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 124
Score = 97.6 bits (244), Expect = 2e-26
Identities = 33/119 (27%), Positives = 52/119 (43%), Gaps = 6/119 (5%)
Query: 24 HTGERPHVCHVCSKSFRNRGKLNVHYKRVHERIRTHQCNHCGRAFSDKSNLTVHIR---T 80
+G C C K F ++ L VH R H + +C CG+ + K NL H
Sbjct: 2 SSGSSGVECPTCHKKFLSKYYLKVH-NRKHTGEKPFECPKCGKCYFRKENLLEHEARNCM 60
Query: 81 HTDEKKYMCELCGAEFAQWATLYNHKFTHNDIK-FKCNYCEKVYNNPSNLQRH-IKTHT 137
+ E+ + C +C F + L H +H +KC+ C + + +LQ H IK H+
Sbjct: 61 NRSEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHS 119
Score = 94.5 bits (236), Expect = 3e-25
Identities = 30/107 (28%), Positives = 47/107 (43%), Gaps = 2/107 (1%)
Query: 2 FKCPQCGALLKNIWSLREHIMIHTGERPHVCHVCSKSFRNRGKLNVH--YKRVHERIRTH 59
+CP C + + L+ H HTGE+P C C K + + L H ++ +
Sbjct: 8 VECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVF 67
Query: 60 QCNHCGRAFSDKSNLTVHIRTHTDEKKYMCELCGAEFAQWATLYNHK 106
C+ C F + L +H+ +HT E Y C C +F Q L +H
Sbjct: 68 TCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHM 114
Score = 77.9 bits (193), Expect = 7e-19
Identities = 26/88 (29%), Positives = 43/88 (48%), Gaps = 5/88 (5%)
Query: 2 FKCPQCGALLKNIWSLREH---IMIHTGERPHVCHVCSKSFRNRGKLNVHYKRVHERIRT 58
F+CP+CG +L EH ++ E+ C VC ++FR R +L +H H
Sbjct: 36 FECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMELRLH-MVSHTGEMP 94
Query: 59 HQCNHCGRAFSDKSNLTVH-IRTHTDEK 85
++C+ C + F K +L H I+ H+
Sbjct: 95 YKCSSCSQQFMQKKDLQSHMIKLHSGPS 122
Score = 34.4 bits (80), Expect = 0.008
Identities = 17/59 (28%), Positives = 25/59 (42%)
Query: 136 HTDNSLYICEICGKDFGTARYLKRHKDTHNSVNTFVCEVCNTGFKVKKHLTQHYKSHSM 194
+ +S C C K F + YLK H H F C C + K++L +H + M
Sbjct: 2 SSGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCM 60
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the
cerebellum 3, disease mutation, DNA-binding,
metal-binding, nucleus, polymorphism; NMR {Homo sapiens}
Length = 155
Score = 96.6 bits (241), Expect = 1e-25
Identities = 37/136 (27%), Positives = 56/136 (41%), Gaps = 15/136 (11%)
Query: 23 IHTGERPHVCHVCSKSFRNRGKLNVHYKRVH---------ERIRTHQCNHCGRAFSDKSN 73
I + C ++F +L H + +C G++F K
Sbjct: 19 IDEAQLSRPKKSCDRTFSTMHELVTH-VTMEHVGGPEQNNHVCYWEECPREGKSFKAKYK 77
Query: 74 LTVHIRTHTDEKKYMC--ELCGAEFAQWATLYNHKFTHNDIK-FKCNY--CEKVYNNPSN 128
L HIR HT EK + C CG FA+ L HK TH K FKC + C++ + N S+
Sbjct: 78 LVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSD 137
Query: 129 LQRHIKTHTDNSLYIC 144
++H+ HT +
Sbjct: 138 RKKHMHVHTSDKSGPS 153
Score = 87.0 bits (216), Expect = 7e-22
Identities = 35/152 (23%), Positives = 50/152 (32%), Gaps = 16/152 (10%)
Query: 37 KSFRNRGKLNVHY--KRVHERIRTHQCNHCGRAFSDKSNLTVHIRTHTDEKKYM------ 88
S + + K + E + C R FS L H+
Sbjct: 2 SSGSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCY 61
Query: 89 ---CELCGAEFAQWATLYNHKFTHNDIK-FKCNY--CEKVYNNPSNLQRHIKTHTDNSLY 142
C G F L NH H K F C + C K++ NL+ H +THT +
Sbjct: 62 WEECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPF 121
Query: 143 ICEI--CGKDFGTARYLKRHKDTHNSVNTFVC 172
CE C + F + K+H H S +
Sbjct: 122 KCEFEGCDRRFANSSDRKKHMHVHTSDKSGPS 153
Score = 80.4 bits (199), Expect = 2e-19
Identities = 30/91 (32%), Positives = 43/91 (47%), Gaps = 5/91 (5%)
Query: 3 KCPQCGALLKNIWSLREHIMIHTGERPHVCHV--CSKSFRNRGKLNVHYKRVHERIRTHQ 60
+CP+ G K + L HI +HTGE+P C C K F L +H KR H + +
Sbjct: 64 ECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIH-KRTHTGEKPFK 122
Query: 61 CNH--CGRAFSDKSNLTVHIRTHTDEKKYMC 89
C C R F++ S+ H+ HT +K
Sbjct: 123 CEFEGCDRRFANSSDRKKHMHVHTSDKSGPS 153
Score = 29.6 bits (67), Expect = 0.52
Identities = 8/64 (12%), Positives = 15/64 (23%)
Query: 147 CGKDFGTARYLKRHKDTHNSVNTFVCEVCNTGFKVKKHLTQHYKSHSMFIPPEQFPGLDP 206
G + K + + + C+ F L H + P +
Sbjct: 3 SGSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYW 62
Query: 207 TSCN 210
C
Sbjct: 63 EECP 66
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein,
DNA- binding, transcription, C2H2-type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1
Length = 96
Score = 92.5 bits (231), Expect = 9e-25
Identities = 28/86 (32%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Query: 24 HTGERPHVCHVCSKSFRNRGKLNVHYKRVHERIRTHQCNHCGRAFSDKSNLTVHIRTHTD 83
PH C VC K F + KL H R H ++ ++C C A +D S+L H+R H+D
Sbjct: 3 SGSSGPHKCEVCGKCFSRKDKLKTH-MRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSD 61
Query: 84 EKKYMCELCGAEFAQWATLYNHKFTH 109
E+ + C++C + L H +H
Sbjct: 62 ERPFKCQICPYASRNSSQLTVHLRSH 87
Score = 86.7 bits (216), Expect = 1e-22
Identities = 29/88 (32%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Query: 2 FKCPQCGALLKNIWSLREHIMIHTGERPHVCHVCSKSFRNRGKLNVHYKRVHERIRTHQC 61
KC CG L+ H+ HTG +P+ C C + + LN H R+H R +C
Sbjct: 9 HKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKH-LRIHSDERPFKC 67
Query: 62 NHCGRAFSDKSNLTVHIRTHTDEKKYMC 89
C A + S LTVH+R+HT +
Sbjct: 68 QICPYASRNSSQLTVHLRSHTGDSGPSS 95
Score = 72.1 bits (178), Expect = 6e-17
Identities = 23/86 (26%), Positives = 41/86 (47%), Gaps = 1/86 (1%)
Query: 80 THTDEKKYMCELCGAEFAQWATLYNHKFTHNDIK-FKCNYCEKVYNNPSNLQRHIKTHTD 138
+ + CE+CG F++ L H H +K +KC C+ + S+L +H++ H+D
Sbjct: 2 SSGSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSD 61
Query: 139 NSLYICEICGKDFGTARYLKRHKDTH 164
+ C+IC + L H +H
Sbjct: 62 ERPFKCQICPYASRNSSQLTVHLRSH 87
Score = 67.1 bits (165), Expect = 5e-15
Identities = 31/134 (23%), Positives = 46/134 (34%), Gaps = 55/134 (41%)
Query: 59 HQCNHCGRAFSDKSNLTVHIRTHTDEKKYMCELCGAEFAQWATLYNHKFTHNDIKFKCNY 118
H+C CG+ FS K L H+R HT K Y KC
Sbjct: 9 HKCEVCGKCFSRKDKLKTHMRCHTGVKPY---------------------------KCKT 41
Query: 119 CEKVYNNPSNLQRHIKTHTDNSLYICEICGKDFGTARYLKRHKDTHNSVNTFVCEVCNTG 178
C+ + S+L +H++ H+D + C+IC ++S
Sbjct: 42 CDYAAADSSSLNKHLRIHSDERPFKCQICPYAS-----------RNSS------------ 78
Query: 179 FKVKKHLTQHYKSH 192
LT H +SH
Sbjct: 79 -----QLTVHLRSH 87
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET:
DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Length = 119
Score = 92.2 bits (230), Expect = 2e-24
Identities = 37/119 (31%), Positives = 54/119 (45%), Gaps = 8/119 (6%)
Query: 25 TGERPHVC--HVCSKSFRNRGKLNVHYKRVHERIRTHQCN--HCGRAFSDKSNLTVHIRT 80
+ +RP +C C+K + L +H R H + +QC+ C R FS L H R
Sbjct: 2 SEKRPFMCAYPGCNKRYFKLSHLQMH-SRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRR 60
Query: 81 HTDEKKYMCELCGAEFAQWATLYNHKFTHNDIK-FKCNY--CEKVYNNPSNLQRHIKTH 136
HT K + C+ C +F++ L H TH K F C + C+K + L RH H
Sbjct: 61 HTGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 76.8 bits (190), Expect = 2e-18
Identities = 34/138 (24%), Positives = 52/138 (37%), Gaps = 29/138 (21%)
Query: 59 HQCNH--CGRAFSDKSNLTVHIRTHTDEKKYMCELCGAEFAQWATLYNHKFTHNDIKFKC 116
C + C + + S+L +H R HT EK Y C+
Sbjct: 7 FMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKD----------------------- 43
Query: 117 NYCEKVYNNPSNLQRHIKTHTDNSLYICEICGKDFGTARYLKRHKDTHNSVNTFVCEV-- 174
CE+ ++ L+RH + HT + C+ C + F + +LK H TH F C
Sbjct: 44 --CERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPS 101
Query: 175 CNTGFKVKKHLTQHYKSH 192
C F L +H+ H
Sbjct: 102 CQKKFARSDELVRHHNMH 119
Score = 69.5 bits (171), Expect = 1e-15
Identities = 21/84 (25%), Positives = 29/84 (34%), Gaps = 5/84 (5%)
Query: 2 FKC--PQCGALLKNIWSLREHIMIHTGERPHVCHVCSKSFRNRGKLNVHYKRVHERIRTH 59
++C C L+ H HTG +P C C + F L H R H +
Sbjct: 37 YQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTH-TRTHTGEKPF 95
Query: 60 QCN--HCGRAFSDKSNLTVHIRTH 81
C C + F+ L H H
Sbjct: 96 SCRWPSCQKKFARSDELVRHHNMH 119
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB
domain containing protein 22B, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 110
Score = 91.4 bits (228), Expect = 3e-24
Identities = 27/108 (25%), Positives = 49/108 (45%), Gaps = 5/108 (4%)
Query: 23 IHTGERPHVCHVCSKSFRNRGKLNVHYKRVHERIRTHQCNHCGRAFSDKSNLTVHIRTHT 82
+G++ + C C KSF ++ + + H +H +R + C CG+ F K +L H++ HT
Sbjct: 4 GSSGDKLYPCQ-CGKSFTHKSQRDRH-MSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHT 61
Query: 83 DEKKYMCELCGAEFAQWATLYNHKFTHNDIK-FKCNYCEKVYNNPSNL 129
K Y C +C F + H+ + K ++ E+ S
Sbjct: 62 GIKPYECNICAKRFMWRDSF--HRHVTSCTKSYEAAKAEQNTTEASGP 107
Score = 87.9 bits (219), Expect = 7e-23
Identities = 25/103 (24%), Positives = 44/103 (42%), Gaps = 4/103 (3%)
Query: 2 FKCPQCGALLKNIWSLREHIMIHTGERPHVCHVCSKSFRNRGKLNVHYKRVHERIRTHQC 61
+ C QCG + H+ +H G RP+ C VC K F+ + L H ++H I+ ++C
Sbjct: 11 YPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGH-MKIHTGIKPYEC 68
Query: 62 NHCGRAFSDKSNLTVHIRTHTDEKKYMCELCGAEFAQWATLYN 104
N C + F + + H + K Y + + +
Sbjct: 69 NICAKRFMWRDSF--HRHVTSCTKSYEAAKAEQNTTEASGPSS 109
Score = 49.0 bits (118), Expect = 4e-08
Identities = 22/110 (20%), Positives = 35/110 (31%), Gaps = 28/110 (25%)
Query: 79 RTHTDEKKYMCELCGAEFAQWATLYNHKFTHNDIKFKCNYCEKVYNNPSNLQRHIKTHTD 138
+ +K Y C+ C K + + S RH+ H
Sbjct: 3 SGSSGDKLYPCQ----------------------------CGKSFTHKSQRDRHMSMHLG 34
Query: 139 NSLYICEICGKDFGTARYLKRHKDTHNSVNTFVCEVCNTGFKVKKHLTQH 188
Y C +CGK F +L H H + + C +C F + +H
Sbjct: 35 LRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSFHRH 84
Score = 38.2 bits (90), Expect = 3e-04
Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Query: 134 KTHTDNSLYICEICGKDFGTARYLKRHKDTHNSVNTFVCEVCNTGFKVKKHLTQHYKSHS 193
+ + LY C+ CGK F RH H + + C VC FK+K HL H K H+
Sbjct: 3 SGSSGDKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHT 61
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation,
initiator element, zinc finger protein, DNA- protein
recognition; HET: DNA; 2.50A {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Length = 124
Score = 90.3 bits (225), Expect = 1e-23
Identities = 41/114 (35%), Positives = 58/114 (50%), Gaps = 8/114 (7%)
Query: 2 FKCPQ--CGALLKNIWSLREHIMIHTGERPHVCHVCSKSFRNRGKLNVHYKRVHERIRTH 59
CP C + ++ ++R+H+ H G R HVC C K+F KL H + VH +
Sbjct: 6 IACPHKGCTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRH-QLVHTGEKPF 63
Query: 60 QCNH--CGRAFSDKSNLTVHIRTHTDEKKYMCEL--CGAEFAQWATLYNHKFTH 109
QC CG+ FS NL H+R HT ++ Y+C C +FAQ L +H TH
Sbjct: 64 QCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 117
Score = 88.3 bits (220), Expect = 6e-23
Identities = 38/119 (31%), Positives = 51/119 (42%), Gaps = 11/119 (9%)
Query: 27 ERPHVCHV--CSKSFRNRGKLNVHYKRVH-ERIRTHQCNHCGRAFSDKSNLTVHIRTHTD 83
R C C+K FR+ + H H R H C CG+AF + S L H HT
Sbjct: 3 PRTIACPHKGCTKMFRDNSAMRKH-LHTHGPR--VHVCAECGKAFVESSKLKRHQLVHTG 59
Query: 84 EKKYMCEL--CGAEFAQWATLYNHKFTHNDIK-FKCNY--CEKVYNNPSNLQRHIKTHT 137
EK + C CG F+ L H H + + C + C K + +NL+ HI TH
Sbjct: 60 EKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHA 118
Score = 79.1 bits (196), Expect = 3e-19
Identities = 29/90 (32%), Positives = 39/90 (43%), Gaps = 5/90 (5%)
Query: 2 FKCPQCGALLKNIWSLREHIMIHTGERPHVCHV--CSKSFRNRGKLNVHYKRVHERIRTH 59
C +CG L+ H ++HTGE+P C C K F L H R+H R +
Sbjct: 35 HVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTH-VRIHTGDRPY 93
Query: 60 QCNH--CGRAFSDKSNLTVHIRTHTDEKKY 87
C C + F+ +NL HI TH K
Sbjct: 94 VCPFDGCNKKFAQSTNLKSHILTHAKAKNN 123
Score = 44.0 bits (105), Expect = 3e-06
Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 5/83 (6%)
Query: 114 FKCNY--CEKVYNNPSNLQRHIKTHTDNSLYICEICGKDFGTARYLKRHKDTHNSVNTFV 171
C + C K++ + S +++H+ TH ++C CGK F + LKRH+ H F
Sbjct: 6 IACPHKGCTKMFRDNSAMRKHLHTHGPRV-HVCAECGKAFVESSKLKRHQLVHTGEKPFQ 64
Query: 172 CEV--CNTGFKVKKHLTQHYKSH 192
C C F + +L H + H
Sbjct: 65 CTFEGCGKRFSLDFNLRTHVRIH 87
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1
Length = 86
Score = 86.8 bits (216), Expect = 1e-22
Identities = 20/85 (23%), Positives = 34/85 (40%), Gaps = 5/85 (5%)
Query: 16 SLREHIMIHTGERPHVCHVCSKSFRNRGKLNVHYKRVH----ERIRTHQCNHCGRAFSDK 71
S HTGE+P+ C C K+FR + L++H + + C+ CG+ F+ +
Sbjct: 2 SSGSSGRTHTGEKPYACSHCDKTFRQKQLLDMH-FKRYHDPNFVPAAFVCSKCGKTFTRR 60
Query: 72 SNLTVHIRTHTDEKKYMCELCGAEF 96
+ + H E G
Sbjct: 61 NTMARHADNCAGPDGVEGENSGPSS 85
Score = 70.2 bits (173), Expect = 3e-16
Identities = 23/85 (27%), Positives = 30/85 (35%), Gaps = 5/85 (5%)
Query: 73 NLTVHIRTHTDEKKYMCELCGAEFAQWATLYNHKFTHNDIK-----FKCNYCEKVYNNPS 127
+ RTHT EK Y C C F Q L H ++D F C+ C K + +
Sbjct: 2 SSGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRN 61
Query: 128 NLQRHIKTHTDNSLYICEICGKDFG 152
+ RH E G G
Sbjct: 62 TMARHADNCAGPDGVEGENSGPSSG 86
Score = 41.0 bits (97), Expect = 2e-05
Identities = 7/38 (18%), Positives = 10/38 (26%)
Query: 2 FKCPQCGALLKNIWSLREHIMIHTGERPHVCHVCSKSF 39
F C +CG ++ H G S
Sbjct: 48 FVCSKCGKTFTRRNTMARHADNCAGPDGVEGENSGPSS 85
Score = 39.0 bits (92), Expect = 8e-05
Identities = 17/69 (24%), Positives = 26/69 (37%), Gaps = 4/69 (5%)
Query: 128 NLQRHIKTHTDNSLYICEICGKDFGTARYLKRHKDTHNSVNT----FVCEVCNTGFKVKK 183
+ +THT Y C C K F + L H ++ N FVC C F +
Sbjct: 2 SSGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRN 61
Query: 184 HLTQHYKSH 192
+ +H +
Sbjct: 62 TMARHADNC 70
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Mus musculus} SCOP:
k.12.1.1
Length = 106
Score = 87.1 bits (217), Expect = 1e-22
Identities = 31/130 (23%), Positives = 46/130 (35%), Gaps = 30/130 (23%)
Query: 16 SLREHIMIHTGERPHVCHVCSKSFRNRGKLNVHYKRVHERIRTHQCNHCGRAFSDKSNLT 75
+ ++ + C CGR F+ NL
Sbjct: 4 GSSGGRLPSKTKKE-------------------FI----------CKFCGRHFTKSYNLL 34
Query: 76 VHIRTHTDEKKYMCELCGAEFAQWATLYNHKFTHNDIK-FKCNYCEKVYNNPSNLQRHIK 134
+H RTHTDE+ Y C++C F + L +H++ H+ K FKC C K + L H
Sbjct: 35 IHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGFCQSRTLAVHKT 94
Query: 135 THTDNSLYIC 144
H S
Sbjct: 95 LHMQTSSPTA 104
Score = 86.7 bits (216), Expect = 2e-22
Identities = 27/88 (30%), Positives = 39/88 (44%), Gaps = 1/88 (1%)
Query: 2 FKCPQCGALLKNIWSLREHIMIHTGERPHVCHVCSKSFRNRGKLNVHYKRVHERIRTHQC 61
F C CG ++L H HT ERP+ C +C K+FR + L H + +H + + +C
Sbjct: 18 FICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDH-RYIHSKEKPFKC 76
Query: 62 NHCGRAFSDKSNLTVHIRTHTDEKKYMC 89
CG+ F L VH H
Sbjct: 77 QECGKGFCQSRTLAVHKTLHMQTSSPTA 104
Score = 79.0 bits (196), Expect = 2e-19
Identities = 27/95 (28%), Positives = 45/95 (47%), Gaps = 1/95 (1%)
Query: 71 KSNLTVHIRTHTDEKKYMCELCGAEFAQWATLYNHKFTHNDIK-FKCNYCEKVYNNPSNL 129
S + +K+++C+ CG F + L H+ TH D + + C+ C K + +L
Sbjct: 2 SSGSSGGRLPSKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHL 61
Query: 130 QRHIKTHTDNSLYICEICGKDFGTARYLKRHKDTH 164
+ H H+ + C+ CGK F +R L HK H
Sbjct: 62 RDHRYIHSKEKPFKCQECGKGFCQSRTLAVHKTLH 96
Score = 25.1 bits (56), Expect = 9.1
Identities = 10/66 (15%), Positives = 17/66 (25%), Gaps = 28/66 (42%)
Query: 127 SNLQRHIKTHTDNSLYICEICGKDFGTARYLKRHKDTHNSVNTFVCEVCNTGFKVKKHLT 186
S +IC+ CG+ F T + +L
Sbjct: 3 SGSSGGRLPSKTKKEFICKFCGRHF-----------TKSY-----------------NLL 34
Query: 187 QHYKSH 192
H ++H
Sbjct: 35 IHERTH 40
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1
Length = 95
Score = 83.7 bits (208), Expect = 2e-21
Identities = 25/87 (28%), Positives = 45/87 (51%), Gaps = 4/87 (4%)
Query: 2 FKCPQCGALLKNIWSLREHIMIHTGERPHVCHVCSKSFRNRGKLNVHYKRVH--ERIRTH 59
C CG + ++++ L H + H+GE+P+ C VC F+ + +++ H R H + +
Sbjct: 8 VACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYH-VRSHDGSVGKPY 66
Query: 60 QCNHCGRAFSDKSNLTVHI-RTHTDEK 85
C CG+ FS +L HI + H+
Sbjct: 67 ICQSCGKGFSRPDHLNGHIKQVHSGPS 93
Score = 82.2 bits (204), Expect = 9e-21
Identities = 29/89 (32%), Positives = 42/89 (47%), Gaps = 4/89 (4%)
Query: 24 HTGERPHVCHVCSKSFRNRGKLNVHYKRVHERIRTHQCNHCGRAFSDKSNLTVHIRTHTD 83
+G C +C K FR+ LN H K H + + C CG F K ++ H+R+H
Sbjct: 2 SSGSSGVACEICGKIFRDVYHLNRH-KLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDG 60
Query: 84 E--KKYMCELCGAEFAQWATLYNH-KFTH 109
K Y+C+ CG F++ L H K H
Sbjct: 61 SVGKPYICQSCGKGFSRPDHLNGHIKQVH 89
Score = 79.8 bits (198), Expect = 6e-20
Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 4/83 (4%)
Query: 59 HQCNHCGRAFSDKSNLTVHIRTHTDEKKYMCELCGAEFAQWATLYNHKFTHN--DIK-FK 115
C CG+ F D +L H +H+ EK Y C +CG F + + H +H+ K +
Sbjct: 8 VACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYI 67
Query: 116 CNYCEKVYNNPSNLQRHIK-THT 137
C C K ++ P +L HIK H+
Sbjct: 68 CQSCGKGFSRPDHLNGHIKQVHS 90
Score = 40.6 bits (96), Expect = 3e-05
Identities = 22/57 (38%), Positives = 31/57 (54%)
Query: 136 HTDNSLYICEICGKDFGTARYLKRHKDTHNSVNTFVCEVCNTGFKVKKHLTQHYKSH 192
+ +S CEICGK F +L RHK +H+ + C VC FK K ++ H +SH
Sbjct: 2 SSGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSH 58
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine
zipper, X-RAY crystallography, structure-based design,
zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1
g.37.1.1 PDB: 1xf7_A
Length = 88
Score = 82.5 bits (205), Expect = 4e-21
Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 3/82 (3%)
Query: 59 HQCNHCGRAFSDKSNLTVHIRTHTDEKKYMCELCGAEFAQWATLYNHKFTHNDIKFKCNY 118
QC C R FS +LT HIRTHT EK + C++CG +FA+ H+ + + +
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQHILPILEDK 63
Query: 119 CEKVYNNPSNLQRHI---KTHT 137
E++ + +L+ + K
Sbjct: 64 VEELLSKNYHLENEVARLKKLV 85
Score = 59.4 bits (145), Expect = 3e-12
Identities = 20/78 (25%), Positives = 33/78 (42%), Gaps = 7/78 (8%)
Query: 114 FKCNYCEKVYNNPSNLQRHIKTHTDNSLYICEICGKDFGTARYLKRHKDTHNSVNT---F 170
F+C C + ++ +L HI+THT + C+ICG+ F + KRH+D
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQ----HILPI 59
Query: 171 VCEVCNTGFKVKKHLTQH 188
+ + HL
Sbjct: 60 LEDKVEELLSKNYHLENE 77
Score = 56.0 bits (136), Expect = 5e-11
Identities = 15/78 (19%), Positives = 28/78 (35%), Gaps = 2/78 (2%)
Query: 85 KKYMCELCGAEFAQWATLYNHKFTHNDIK-FKCNYCEKVYNNPSNLQRHIKTHTDNSLYI 143
K + C +C F++ L H TH K F C+ C + + +RH +
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQHILP-IL 60
Query: 144 CEICGKDFGTARYLKRHK 161
+ + +L+
Sbjct: 61 EDKVEELLSKNYHLENEV 78
Score = 43.3 bits (103), Expect = 3e-06
Identities = 8/57 (14%), Positives = 12/57 (21%), Gaps = 3/57 (5%)
Query: 2 FKCPQCGALLKNIWSLREHIMIHTGERPHVCHVCSKSFRNRGKLNVHYKRVHERIRT 58
F C CG + H I P + + L +
Sbjct: 32 FACDICGRKFARSDERKRHRDIQH-ILPILEDKVEELLSKNYHLENE--VARLKKLV 85
Score = 39.0 bits (92), Expect = 1e-04
Identities = 13/51 (25%), Positives = 21/51 (41%)
Query: 142 YICEICGKDFGTARYLKRHKDTHNSVNTFVCEVCNTGFKVKKHLTQHYKSH 192
+ C IC ++F + +L H TH F C++C F +H
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQ 54
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc
finger, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 81.4 bits (202), Expect = 8e-21
Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 4/75 (5%)
Query: 16 SLREHIMIHTGERPHVCHVCSKSFRNRGKLNVHYKRVH--ERIRTHQCNHCGRAFSDKSN 73
S H+GE+P+ C++C F G + +H E + C HC + KS+
Sbjct: 2 SSGSSGRTHSGEKPYECYICHARFTQSGTMKMH-ILQKHTENVAKFHCPHCDTVIARKSD 60
Query: 74 LTVHIRT-HTDEKKY 87
L VH+R H+
Sbjct: 61 LGVHLRKQHSYSGPS 75
Score = 63.7 bits (156), Expect = 5e-14
Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
Query: 73 NLTVHIRTHTDEKKYMCELCGAEFAQWATLYNHKFTH---NDIKFKCNYCEKVYNNPSNL 129
+ RTH+ EK Y C +C A F Q T+ H N KF C +C+ V S+L
Sbjct: 2 SSGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDL 61
Query: 130 QRHIKT-HT 137
H++ H+
Sbjct: 62 GVHLRKQHS 70
Score = 49.1 bits (118), Expect = 2e-08
Identities = 17/67 (25%), Positives = 26/67 (38%), Gaps = 2/67 (2%)
Query: 128 NLQRHIKTHTDNSLYICEICGKDFGTARYLKRHKDTHNSVNT--FVCEVCNTGFKVKKHL 185
+ +TH+ Y C IC F + +K H ++ N F C C+T K L
Sbjct: 2 SSGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDL 61
Query: 186 TQHYKSH 192
H +
Sbjct: 62 GVHLRKQ 68
Score = 29.0 bits (66), Expect = 0.29
Identities = 8/30 (26%), Positives = 12/30 (40%), Gaps = 1/30 (3%)
Query: 2 FKCPQCGALLKNIWSLREHI-MIHTGERPH 30
F CP C ++ L H+ H+ P
Sbjct: 46 FHCPHCDTVIARKSDLGVHLRKQHSYSGPS 75
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain,
protein-DNA complex, DNA-B metal-binding, nucleus; HET:
DNA; NMR {Rattus norvegicus}
Length = 82
Score = 80.5 bits (200), Expect = 2e-20
Identities = 31/81 (38%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Query: 2 FKCPQCGALLKNIWSLREHIMIHTGERPHVCHVCSKSFRNRGKLNVHYKRVHERIRTHQC 61
F C CG K +L H++IH+ RP+ C C K F + + H +H + H+C
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKH-TFIHTGEKPHKC 60
Query: 62 NHCGRAFSDKSNLTVHIRTHT 82
CG+AFS SNL H R HT
Sbjct: 61 QVCGKAFSQSSNLITHSRKHT 81
Score = 80.2 bits (199), Expect = 4e-20
Identities = 29/81 (35%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Query: 58 THQCNHCGRAFSDKSNLTVHIRTHTDEKKYMCELCGAEFAQWATLYNHKFTHNDIK-FKC 116
+ C CG++F S L+ H+ H+D + Y C+ CG F Q + + H F H K KC
Sbjct: 1 SFDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKC 60
Query: 117 NYCEKVYNNPSNLQRHIKTHT 137
C K ++ SNL H + HT
Sbjct: 61 QVCGKAFSQSSNLITHSRKHT 81
Score = 54.7 bits (133), Expect = 2e-10
Identities = 25/79 (31%), Positives = 34/79 (43%)
Query: 114 FKCNYCEKVYNNPSNLQRHIKTHTDNSLYICEICGKDFGTARYLKRHKDTHNSVNTFVCE 173
F C C K + S L H+ H+D Y C+ CGK F +K+H H C+
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 174 VCNTGFKVKKHLTQHYKSH 192
VC F +L H + H
Sbjct: 62 VCGKAFSQSSNLITHSRKH 80
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding
protein, transcription/DNA complex; HET: DNA; 1.60A
{Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB:
1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A*
1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Length = 90
Score = 80.6 bits (200), Expect = 3e-20
Identities = 29/92 (31%), Positives = 39/92 (42%), Gaps = 15/92 (16%)
Query: 2 FKCP--QCGALLKNIWSLREHIMIHTGERPHVCHVCSKSFRNRGKLNVHYKRVHERIRTH 59
+ CP C SL HI IHTG++P C +C ++F L H IRTH
Sbjct: 5 YACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTH-------IRTH 57
Query: 60 ------QCNHCGRAFSDKSNLTVHIRTHTDEK 85
C+ CGR F+ H + H +K
Sbjct: 58 TGEKPFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 80.2 bits (199), Expect = 4e-20
Identities = 35/85 (41%), Positives = 45/85 (52%), Gaps = 3/85 (3%)
Query: 27 ERPHVCHV--CSKSFRNRGKLNVHYKRVHERIRTHQCNHCGRAFSDKSNLTVHIRTHTDE 84
ERP+ C V C + F G L H R+H + QC C R FS +LT HIRTHT E
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRH-IRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 85 KKYMCELCGAEFAQWATLYNHKFTH 109
K + C++CG +FA+ H H
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIH 85
Score = 72.5 bits (179), Expect = 3e-17
Identities = 30/103 (29%), Positives = 42/103 (40%), Gaps = 27/103 (26%)
Query: 62 NHCGRAFSDKSNLTVHIRTHTDEKKYMCELCGAEFAQWATLYNHKFTHNDIKFKCNYCEK 121
C R FS +LT HIR HT +K + C +C F++
Sbjct: 10 ESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSR----------------------- 46
Query: 122 VYNNPSNLQRHIKTHTDNSLYICEICGKDFGTARYLKRHKDTH 164
+L HI+THT + C+ICG+ F + KRH H
Sbjct: 47 ----SDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 35.9 bits (84), Expect = 0.001
Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
Query: 142 YICEI--CGKDFGTARYLKRHKDTHNSVNTFVCEVCNTGFKVKKHLTQHYKSH 192
Y C + C + F + L RH H F C +C F HLT H ++H
Sbjct: 5 YACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 57
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692,
structural genomics, NPPSFA, national project on
protein structural and functional analyses; NMR {Homo
sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 79
Score = 78.4 bits (194), Expect = 2e-19
Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 4/77 (5%)
Query: 24 HTGERPHVCHV--CSKSFRNRGKLNVHYKRVHERIRTHQCNH--CGRAFSDKSNLTVHIR 79
+G C C + F NR LN H K H ++ C CG++F+ K +L H++
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMK 61
Query: 80 THTDEKKYMCELCGAEF 96
H+D + Y+CE G
Sbjct: 62 LHSDTRDYICEFSGPSS 78
Score = 44.8 bits (107), Expect = 5e-07
Identities = 18/71 (25%), Positives = 30/71 (42%), Gaps = 5/71 (7%)
Query: 114 FKCNY--CEKVYNNPSNLQRHIK-THTDNSLYICE--ICGKDFGTARYLKRHKDTHNSVN 168
C++ C ++++N L H K H + C CGK F ++LK H H+
Sbjct: 8 MPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTR 67
Query: 169 TFVCEVCNTGF 179
++CE
Sbjct: 68 DYICEFSGPSS 78
Score = 43.7 bits (104), Expect = 2e-06
Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Query: 2 FKCPQ--CGALLKNIWSLREHIMIHTGERPHVCHVCSKSF 39
F CP+ CG L+EH+ +H+ R ++C S
Sbjct: 39 FSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEFSGPSS 78
Score = 33.7 bits (78), Expect = 0.006
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
Query: 136 HTDNSLYICEI--CGKDFGTARYLKRHK-DTHNSVNTFVCE--VCNTGFKVKKHLTQHYK 190
+ +S C+ CG+ F +YL HK H +F C C F KKHL +H K
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMK 61
Query: 191 SHS 193
HS
Sbjct: 62 LHS 64
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN
domain containing protein 16, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 76.7 bits (190), Expect = 6e-19
Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Query: 16 SLREHIMIHTGERPHVCHVCSKSFRNRGKLNVHYKRVHERIRTHQCNHCGRAFSDKSNLT 75
S R + C C KSF + L+ H +R H + ++C+ CG+AF +S+L
Sbjct: 5 SSGRSEWQQRERRRYKCDECGKSFSHSSDLSKH-RRTHTGEKPYKCDECGKAFIQRSHLI 63
Query: 76 VHIRTHTDEKKY 87
H R HT
Sbjct: 64 GHHRVHTGSGPS 75
Score = 60.9 bits (149), Expect = 7e-13
Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Query: 71 KSNLTVHIRTHTDEKKYMCELCGAEFAQWATLYNHKFTHNDIK-FKCNYCEKVYNNPSNL 129
+ + ++Y C+ CG F+ + L H+ TH K +KC+ C K + S+L
Sbjct: 3 SGSSGRSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHL 62
Query: 130 QRHIKTHT 137
H + HT
Sbjct: 63 IGHHRVHT 70
Score = 44.4 bits (106), Expect = 8e-07
Identities = 18/66 (27%), Positives = 29/66 (43%)
Query: 127 SNLQRHIKTHTDNSLYICEICGKDFGTARYLKRHKDTHNSVNTFVCEVCNTGFKVKKHLT 186
+ R + Y C+ CGK F + L +H+ TH + C+ C F + HL
Sbjct: 4 GSSGRSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLI 63
Query: 187 QHYKSH 192
H++ H
Sbjct: 64 GHHRVH 69
Score = 28.9 bits (66), Expect = 0.28
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 2 FKCPQCGALLKNIWSLREHIMIHTGERPH 30
+KC +CG L H +HTG P
Sbjct: 47 YKCDECGKAFIQRSHLIGHHRVHTGSGPS 75
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1
Length = 72
Score = 76.7 bits (190), Expect = 6e-19
Identities = 26/71 (36%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Query: 17 LREHIMIHTGERPHVCHVCSKSFRNRGKLNVHYKRVHERIRTHQCNHCGRAFSDKSNLTV 76
IH+GE+P+ C C K+F L H +RVH + ++C CG+AFS S L
Sbjct: 2 SSGSSGIHSGEKPYGCVECGKAFSRSSILVQH-QRVHTGEKPYKCLECGKAFSQNSGLIN 60
Query: 77 HIRTHTDEKKY 87
H R HT
Sbjct: 61 HQRIHTSGPSS 71
Score = 54.4 bits (132), Expect = 2e-10
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Query: 74 LTVHIRTHTDEKKYMCELCGAEFAQWATLYNHKFTHNDIK-FKCNYCEKVYNNPSNLQRH 132
+ H+ EK Y C CG F++ + L H+ H K +KC C K ++ S L H
Sbjct: 2 SSGSSGIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINH 61
Query: 133 IKTHT 137
+ HT
Sbjct: 62 QRIHT 66
Score = 40.1 bits (95), Expect = 3e-05
Identities = 16/65 (24%), Positives = 23/65 (35%)
Query: 129 LQRHIKTHTDNSLYICEICGKDFGTARYLKRHKDTHNSVNTFVCEVCNTGFKVKKHLTQH 188
H+ Y C CGK F + L +H+ H + C C F L H
Sbjct: 2 SSGSSGIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINH 61
Query: 189 YKSHS 193
+ H+
Sbjct: 62 QRIHT 66
Score = 29.4 bits (67), Expect = 0.18
Identities = 9/29 (31%), Positives = 11/29 (37%)
Query: 2 FKCPQCGALLKNIWSLREHIMIHTGERPH 30
+KC +CG L H IHT
Sbjct: 43 YKCLECGKAFSQNSGLINHQRIHTSGPSS 71
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative; NMR {Homo sapiens}
Length = 74
Score = 76.3 bits (189), Expect = 7e-19
Identities = 26/72 (36%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 16 SLREHIMIHTGERPHVCHVCSKSFRNRGKLNVHYKRVHERIRTHQCNHCGRAFSDKSNLT 75
H + ++P+ C C SFR +G L H K VH + ++CN CG F+ +NL
Sbjct: 4 HHHHHSHMTHSDKPYKCDRCQASFRYKGNLASH-KTVHTGEKPYRCNICGAQFNRPANLK 62
Query: 76 VHIRTHTDEKKY 87
H R H+ EK Y
Sbjct: 63 THTRIHSGEKPY 74
Score = 65.2 bits (160), Expect = 1e-14
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Query: 72 SNLTVHIRTHTDEKKYMCELCGAEFAQWATLYNHKFTHNDIK-FKCNYCEKVYNNPSNLQ 130
+ H +K Y C+ C A F L +HK H K ++CN C +N P+NL+
Sbjct: 3 HHHHHHSHMTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLK 62
Query: 131 RHIKTHT 137
H + H+
Sbjct: 63 THTRIHS 69
Score = 46.3 bits (111), Expect = 2e-07
Identities = 15/66 (22%), Positives = 22/66 (33%)
Query: 127 SNLQRHIKTHTDNSLYICEICGKDFGTARYLKRHKDTHNSVNTFVCEVCNTGFKVKKHLT 186
+ H + Y C+ C F L HK H + C +C F +L
Sbjct: 3 HHHHHHSHMTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLK 62
Query: 187 QHYKSH 192
H + H
Sbjct: 63 THTRIH 68
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 78
Score = 72.1 bits (177), Expect = 4e-17
Identities = 14/70 (20%), Positives = 23/70 (32%), Gaps = 4/70 (5%)
Query: 24 HTGERPHVCHVCSKSFRNRGKLNVHYKRVHERIRTH---QCNHCGRAFSDKSNLTVHIRT 80
+G C +C + R + LN H +R H C CG+ F ++ H
Sbjct: 2 SSGSSGLQCEICGFTCRQKASLNWH-QRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSK 60
Query: 81 HTDEKKYMCE 90
+
Sbjct: 61 SHPALLLAPQ 70
Score = 63.2 bits (154), Expect = 9e-14
Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
Query: 59 HQCNHCGRAFSDKSNLTVHIRTHTD---EKKYMCELCGAEFAQWATLYNHKFTH 109
QC CG K++L H R H + ++ CE CG F + ++ H+
Sbjct: 8 LQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKS 61
Score = 57.8 bits (140), Expect = 9e-12
Identities = 19/77 (24%), Positives = 28/77 (36%), Gaps = 5/77 (6%)
Query: 81 HTDEKKYMCELCGAEFAQWATLYNHKFTHNDIK----FKCNYCEKVYNNPSNLQRHIKTH 136
+ CE+CG Q A+L H+ H + F C +C K + P ++ H
Sbjct: 2 SSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKS 61
Query: 137 TDNSLYIC-EICGKDFG 152
L E G G
Sbjct: 62 HPALLLAPQESSGPSSG 78
Score = 54.7 bits (132), Expect = 1e-10
Identities = 14/70 (20%), Positives = 20/70 (28%), Gaps = 3/70 (4%)
Query: 2 FKCPQCGALLKNIWSLREHIMIHT---GERPHVCHVCSKSFRNRGKLNVHYKRVHERIRT 58
+C CG + SL H H C C K F + H + H +
Sbjct: 8 LQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLL 67
Query: 59 HQCNHCGRAF 68
G +
Sbjct: 68 APQESSGPSS 77
Score = 45.9 bits (109), Expect = 3e-07
Identities = 16/67 (23%), Positives = 24/67 (35%), Gaps = 5/67 (7%)
Query: 142 YICEICGKDFGTARYLKRHKDTHNSVNT---FVCEVCNTGFKVKKHLTQHYKSH--SMFI 196
CEICG L H+ H F CE C F+ + H ++ +
Sbjct: 8 LQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLL 67
Query: 197 PPEQFPG 203
P++ G
Sbjct: 68 APQESSG 74
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA
binding, transcription, C2H2 type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 70
Score = 70.6 bits (174), Expect = 1e-16
Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
Query: 24 HTGERPHVCHVCSKSFRNRGKLNVHYKRVHERIRTHQCNHCGRAFSDKSNLTVHIRTHTD 83
+ P C CS S ++ L +H +R+H R +CN+C SNL+ H++
Sbjct: 4 GSSGHPEKCSECSYSCSSKAALRIH-ERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHG 62
Query: 84 EKKYMC 89
+
Sbjct: 63 DMSGPS 68
Score = 61.7 bits (151), Expect = 3e-13
Identities = 18/60 (30%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
Query: 79 RTHTDEKKYMCELCGAEFAQWATLYNHKFTHNDIK-FKCNYCEKVYNNPSNLQRHIKTHT 137
+ + C C + A L H+ H + FKCNYC PSNL +H+K
Sbjct: 2 SSGSSGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFH 61
Score = 39.0 bits (92), Expect = 7e-05
Identities = 12/58 (20%), Positives = 22/58 (37%)
Query: 135 THTDNSLYICEICGKDFGTARYLKRHKDTHNSVNTFVCEVCNTGFKVKKHLTQHYKSH 192
+ + C C + L+ H+ H + F C C+ K +L++H K
Sbjct: 3 SGSSGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKF 60
Score = 28.2 bits (64), Expect = 0.39
Identities = 8/26 (30%), Positives = 12/26 (46%)
Query: 2 FKCPQCGALLKNIWSLREHIMIHTGE 27
FKC C K +L +H+ G+
Sbjct: 38 FKCNYCSFDTKQPSNLSKHMKKFHGD 63
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding,
transcription, metal-binding, DNA, protein, nucleus,
activator; 1.70A {Mus musculus} PDB: 2wbu_A
Length = 89
Score = 70.3 bits (173), Expect = 2e-16
Identities = 23/88 (26%), Positives = 34/88 (38%), Gaps = 3/88 (3%)
Query: 24 HTGERPHVCHVCSKSFRNRGKLNVHYKRVHERIRTHQCNH--CGRAFSDKSNLTVHIRTH 81
T C K++ L H R H + + C+ CG F+ LT H R H
Sbjct: 2 RTATHTCDYAGCGKTYTKSSHLKAH-LRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKH 60
Query: 82 TDEKKYMCELCGAEFAQWATLYNHKFTH 109
T + + C+ C F++ L H H
Sbjct: 61 TGHRPFQCQKCDRAFSRSDHLALHMKRH 88
Score = 68.3 bits (168), Expect = 1e-15
Identities = 28/82 (34%), Positives = 37/82 (45%), Gaps = 3/82 (3%)
Query: 2 FKCPQCGALLKNIWSLREHIMIHTGERPHVCHV--CSKSFRNRGKLNVHYKRVHERIRTH 59
CG L+ H+ HTGE+P+ C C F +L HY R H R
Sbjct: 8 CDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHY-RKHTGHRPF 66
Query: 60 QCNHCGRAFSDKSNLTVHIRTH 81
QC C RAFS +L +H++ H
Sbjct: 67 QCQKCDRAFSRSDHLALHMKRH 88
Score = 59.5 bits (145), Expect = 3e-12
Identities = 27/82 (32%), Positives = 35/82 (42%), Gaps = 2/82 (2%)
Query: 113 KFKCNYCEKVYNNPSNLQRHIKTHTDNSLYIC--EICGKDFGTARYLKRHKDTHNSVNTF 170
C K Y S+L+ H++THT Y C + CG F + L RH H F
Sbjct: 7 TCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPF 66
Query: 171 VCEVCNTGFKVKKHLTQHYKSH 192
C+ C+ F HL H K H
Sbjct: 67 QCQKCDRAFSRSDHLALHMKRH 88
Score = 31.7 bits (73), Expect = 0.036
Identities = 17/60 (28%), Positives = 25/60 (41%), Gaps = 2/60 (3%)
Query: 136 HTDNSLYICEICGKDFGTARYLKRHKDTHNSVNTFVC--EVCNTGFKVKKHLTQHYKSHS 193
T CGK + + +LK H TH + C + C F LT+HY+ H+
Sbjct: 2 RTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHT 61
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND,
transcription factor, kruppel-like factor, GC-box
promoter elements, structural genomics; NMR {Homo
sapiens}
Length = 100
Score = 69.2 bits (170), Expect = 8e-16
Identities = 25/92 (27%), Positives = 36/92 (39%), Gaps = 5/92 (5%)
Query: 24 HTGERPHVCHV--CSKSFRNRGKLNVHYKRVHERIRTHQCNH--CGRAFSDKSNLTVHIR 79
R H C C+K + L H R H + ++C C F+ LT H R
Sbjct: 10 LEKRRIHYCDYPGCTKVYTKSSHLKAH-LRTHTGEKPYKCTWEGCDWRFARSDELTRHYR 68
Query: 80 THTDEKKYMCELCGAEFAQWATLYNHKFTHND 111
HT K + C +C F++ L H H +
Sbjct: 69 KHTGAKPFQCGVCNRSFSRSDHLALHMKRHQN 100
Score = 66.9 bits (164), Expect = 6e-15
Identities = 29/116 (25%), Positives = 46/116 (39%), Gaps = 27/116 (23%)
Query: 53 HERIRTHQCNH--CGRAFSDKSNLTVHIRTHTDEKKYMCELCGAEFAQWATLYNHKFTHN 110
E+ R H C++ C + ++ S+L H+RTHT EK Y C G
Sbjct: 10 LEKRRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEG----------------- 52
Query: 111 DIKFKCNYCEKVYNNPSNLQRHIKTHTDNSLYICEICGKDFGTARYLKRHKDTHNS 166
C+ + L RH + HT + C +C + F + +L H H +
Sbjct: 53 --------CDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMKRHQN 100
Score = 66.9 bits (164), Expect = 7e-15
Identities = 26/82 (31%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
Query: 4 CPQCGALLKNIWSLREHIMIHTGERPHVCHV--CSKSFRNRGKLNVHYKRVHERIRTHQC 61
P C + L+ H+ HTGE+P+ C C F +L HY R H + QC
Sbjct: 20 YPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHY-RKHTGAKPFQC 78
Query: 62 NHCGRAFSDKSNLTVHIRTHTD 83
C R+FS +L +H++ H +
Sbjct: 79 GVCNRSFSRSDHLALHMKRHQN 100
Score = 63.0 bits (154), Expect = 2e-13
Identities = 31/101 (30%), Positives = 37/101 (36%), Gaps = 5/101 (4%)
Query: 94 AEFAQWATLYNHKFTHNDIKFKCNYCEKVYNNPSNLQRHIKTHTDNSLYIC--EICGKDF 151
+ H C KVY S+L+ H++THT Y C E C F
Sbjct: 1 GSSGSSGPDLEKRRIH---YCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRF 57
Query: 152 GTARYLKRHKDTHNSVNTFVCEVCNTGFKVKKHLTQHYKSH 192
+ L RH H F C VCN F HL H K H
Sbjct: 58 ARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMKRH 98
Score = 34.9 bits (81), Expect = 0.003
Identities = 18/74 (24%), Positives = 29/74 (39%), Gaps = 10/74 (13%)
Query: 124 NNPSNLQRHIKTHTDNSLYICEI--CGKDFGTARYLKRHKDTHNSVNTFVC--EVCNTGF 179
+ + H C+ C K + + +LK H TH + C E C+ F
Sbjct: 4 GSSGPDLEKRRIHY------CDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRF 57
Query: 180 KVKKHLTQHYKSHS 193
LT+HY+ H+
Sbjct: 58 ARSDELTRHYRKHT 71
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex,
double helix, transcription/DNA complex; HET: DNA;
2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Length = 66
Score = 67.2 bits (165), Expect = 2e-15
Identities = 15/61 (24%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Query: 23 IHTGERPHVCHVCSKSFRNRGKLNVHYK-RVHERIRTHQCNHCGRAFSDKSNLTVHIRTH 81
GE + C VCS+ + + HY ++ + C C + F+ K N+T H++
Sbjct: 4 TKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKII 63
Query: 82 T 82
Sbjct: 64 H 64
Score = 61.8 bits (151), Expect = 2e-13
Identities = 17/65 (26%), Positives = 26/65 (40%), Gaps = 2/65 (3%)
Query: 50 KRVHERIRTHQCNHCGRAFSDKSNLTVHIRT--HTDEKKYMCELCGAEFAQWATLYNHKF 107
+ E T++C C R ++ SN H T + K Y C C EF + + H
Sbjct: 2 EFTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVK 61
Query: 108 THNDI 112
+ I
Sbjct: 62 IIHKI 66
Score = 51.8 bits (125), Expect = 1e-09
Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Query: 114 FKCNYCEKVYNNPSNLQRHIKT--HTDNSLYICEICGKDFGTARYLKRHKDTHNSV 167
++C C +VY + SN RH T + +Y C C K+F + H + +
Sbjct: 11 YRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHKI 66
Score = 45.2 bits (108), Expect = 3e-07
Identities = 10/57 (17%), Positives = 23/57 (40%), Gaps = 3/57 (5%)
Query: 2 FKCPQCGALLKNIWSLREHIMI--HTGERPHVCHVCSKSFRNRGKLNVHYKRVHERI 56
++C C + +I + H + + + C C K F + + H ++ +I
Sbjct: 11 YRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAH-VKIIHKI 66
Score = 42.5 bits (101), Expect = 4e-06
Identities = 15/60 (25%), Positives = 23/60 (38%), Gaps = 2/60 (3%)
Query: 135 THTDNSLYICEICGKDFGTARYLKRHKDTHNSVNT--FVCEVCNTGFKVKKHLTQHYKSH 192
T Y C++C + + RH T + N + C C F K ++T H K
Sbjct: 4 TKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKII 63
>2j7j_A Transcription factor IIIA; zinc finger module, alternative
initiation, nuclear protein, phosphorylation,
hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus
laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B
2hgh_A
Length = 85
Score = 59.9 bits (146), Expect = 2e-12
Identities = 28/109 (25%), Positives = 40/109 (36%), Gaps = 28/109 (25%)
Query: 59 HQCNH--CGRAFSDKSNLTVHIRTHTDEKKYMCELCGAEFAQWATLYNHKFTHNDIKFKC 116
+ C+ CG+AF + L VH +HT + Y C G
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEG----------------------- 38
Query: 117 NYCEKVYNNPSNLQRHIKTHTDNSLYICEICGKDFGT-ARYLKRHKDTH 164
C+K ++ PS L+RH K H + C T YLK + H
Sbjct: 39 --CDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHVAECH 85
Score = 58.4 bits (142), Expect = 7e-12
Identities = 22/80 (27%), Positives = 33/80 (41%), Gaps = 5/80 (6%)
Query: 30 HVCHV--CSKSFRNRGKLNVHYKRVHERIRTHQCNH--CGRAFSDKSNLTVHIRTHTDEK 85
+VCH C K+F+ +L VH + H + ++C H C + FS S L H + H
Sbjct: 2 YVCHFENCGKAFKKHNQLKVH-QFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYP 60
Query: 86 KYMCELCGAEFAQWATLYNH 105
+ C W H
Sbjct: 61 CKKDDSCSFVGKTWTLYLKH 80
Score = 56.5 bits (137), Expect = 4e-11
Identities = 21/81 (25%), Positives = 32/81 (39%), Gaps = 4/81 (4%)
Query: 114 FKCNY--CEKVYNNPSNLQRHIKTHTDNSLYIC--EICGKDFGTARYLKRHKDTHNSVNT 169
+ C++ C K + + L+ H +HT Y C E C K F LKRH+ H
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPC 61
Query: 170 FVCEVCNTGFKVKKHLTQHYK 190
+ C+ K +H
Sbjct: 62 KKDDSCSFVGKTWTLYLKHVA 82
Score = 55.3 bits (134), Expect = 1e-10
Identities = 19/81 (23%), Positives = 29/81 (35%), Gaps = 4/81 (4%)
Query: 4 CPQCGALLKNIWSLREHIMIHTGERPHVCHV--CSKSFRNRGKLNVHYKRVHERIRTHQC 61
CG K L+ H HT + P+ C C K F +L H ++VH +
Sbjct: 6 FENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRH-EKVHAGYPCKKD 64
Query: 62 NHCGRAFSDKSNLTVHI-RTH 81
+ C + H+ H
Sbjct: 65 DSCSFVGKTWTLYLKHVAECH 85
Score = 37.6 bits (88), Expect = 3e-04
Identities = 11/54 (20%), Positives = 16/54 (29%), Gaps = 2/54 (3%)
Query: 2 FKCPQ--CGALLKNIWSLREHIMIHTGERPHVCHVCSKSFRNRGKLNVHYKRVH 53
++CP C L+ H +H G CS + H H
Sbjct: 32 YECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHVAECH 85
Score = 33.4 bits (77), Expect = 0.009
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 4/57 (7%)
Query: 141 LYICEI--CGKDFGTARYLKRHKDTHNSVNTFVC--EVCNTGFKVKKHLTQHYKSHS 193
+Y+C CGK F LK H+ +H + C E C+ F + L +H K H+
Sbjct: 1 MYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHA 57
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 115
Score = 59.8 bits (144), Expect = 5e-12
Identities = 20/94 (21%), Positives = 28/94 (29%), Gaps = 4/94 (4%)
Query: 16 SLREHIMIHTGERPHVCHVCSKSFRNRGKLNVHYKRVHERIRT----HQCNHCGRAFSDK 71
S + + I TG C CS ++ +L VH N + K
Sbjct: 6 SGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRK 65
Query: 72 SNLTVHIRTHTDEKKYMCELCGAEFAQWATLYNH 105
+L +K C CG F L H
Sbjct: 66 RSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVH 99
Score = 56.7 bits (136), Expect = 6e-11
Identities = 18/98 (18%), Positives = 28/98 (28%), Gaps = 6/98 (6%)
Query: 69 SDKSNLTVHIRTHTDEKKYMCELCGAEFAQWATLYNHKFTH------NDIKFKCNYCEKV 122
S S+ ++ T K+ C+ C A + L H N N
Sbjct: 2 SSGSSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWS 61
Query: 123 YNNPSNLQRHIKTHTDNSLYICEICGKDFGTARYLKRH 160
+L + C CG F + + L H
Sbjct: 62 KPRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVH 99
Score = 42.1 bits (98), Expect = 1e-05
Identities = 18/86 (20%), Positives = 30/86 (34%), Gaps = 6/86 (6%)
Query: 2 FKCPQCGALLKNIWSLREHIMIHTGERPHVCHVCSKSFRNRGKLNVH-----YKRVHERI 56
F+C C A + L H M TG H + R + +
Sbjct: 20 FRCKDCSAAYDTLVELTVH-MNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKEDAQ 78
Query: 57 RTHQCNHCGRAFSDKSNLTVHIRTHT 82
+ +C +CG +F +L+VH+
Sbjct: 79 KVLKCMYCGHSFESLQDLSVHMIKTK 104
>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 95
Score = 58.1 bits (140), Expect = 1e-11
Identities = 18/75 (24%), Positives = 24/75 (32%), Gaps = 8/75 (10%)
Query: 23 IHTGERPHVCHVCSKSFRNRGKLNVHYKRVHERIRTHQ--------CNHCGRAFSDKSNL 74
I + C ++F +L H H C G++F K L
Sbjct: 19 IDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKL 78
Query: 75 TVHIRTHTDEKKYMC 89
HIR HT EK
Sbjct: 79 VNHIRVHTGEKSGPS 93
Score = 33.0 bits (75), Expect = 0.013
Identities = 12/68 (17%), Positives = 18/68 (26%), Gaps = 10/68 (14%)
Query: 80 THTDEKKYMCELCGAEFAQWATLYNH-KFTHNDIKFK---------CNYCEKVYNNPSNL 129
+ + C F+ L H H + C K + L
Sbjct: 19 IDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKL 78
Query: 130 QRHIKTHT 137
HI+ HT
Sbjct: 79 VNHIRVHT 86
Score = 32.6 bits (74), Expect = 0.022
Identities = 15/68 (22%), Positives = 19/68 (27%), Gaps = 9/68 (13%)
Query: 135 THTDNSLYICEICGKDFGTARYLKRH-KDTH---NSVNTFVCE-----VCNTGFKVKKHL 185
+ C + F T L H H N VC FK K L
Sbjct: 19 IDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKL 78
Query: 186 TQHYKSHS 193
H + H+
Sbjct: 79 VNHIRVHT 86
Score = 29.6 bits (66), Expect = 0.23
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 4 CPQCGALLKNIWSLREHIMIHTGERPHVC 32
CP+ G K + L HI +HTGE+
Sbjct: 65 CPREGKSFKAKYKLVNHIRVHTGEKSGPS 93
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces
cerevisiae} SCOP: g.37.1.1 g.37.1.1
Length = 60
Score = 56.3 bits (137), Expect = 2e-11
Identities = 20/50 (40%), Positives = 27/50 (54%)
Query: 57 RTHQCNHCGRAFSDKSNLTVHIRTHTDEKKYMCELCGAEFAQWATLYNHK 106
R+ C C RAF+ + +L H R+HT+EK Y C LC F + L H
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHA 50
Score = 54.0 bits (131), Expect = 2e-10
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Query: 28 RPHVCHVCSKSFRNRGKLNVHYKRVHERIRTHQCNHCGRAFSDKSNLTVHI-RTHTDEK 85
R VC VC+++F + L H R H + + C C RAF+ + L H + H+
Sbjct: 1 RSFVCEVCTRAFARQEHLKRH-YRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGNL 58
Score = 52.9 bits (128), Expect = 5e-10
Identities = 16/52 (30%), Positives = 26/52 (50%)
Query: 2 FKCPQCGALLKNIWSLREHIMIHTGERPHVCHVCSKSFRNRGKLNVHYKRVH 53
F C C L+ H HT E+P+ C +C+++F R L H +++H
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIH 54
Score = 42.5 bits (101), Expect = 3e-06
Identities = 15/48 (31%), Positives = 24/48 (50%)
Query: 114 FKCNYCEKVYNNPSNLQRHIKTHTDNSLYICEICGKDFGTARYLKRHK 161
F C C + + +L+RH ++HT+ Y C +C + F L RH
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHA 50
Score = 36.3 bits (85), Expect = 4e-04
Identities = 15/49 (30%), Positives = 27/49 (55%)
Query: 142 YICEICGKDFGTARYLKRHKDTHNSVNTFVCEVCNTGFKVKKHLTQHYK 190
++CE+C + F +LKRH +H + + C +CN F + L +H +
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQ 51
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 54
Score = 55.7 bits (135), Expect = 3e-11
Identities = 15/48 (31%), Positives = 21/48 (43%)
Query: 23 IHTGERPHVCHVCSKSFRNRGKLNVHYKRVHERIRTHQCNHCGRAFSD 70
+ +P++C C K F LN H K+VH R H+C S
Sbjct: 6 SGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSS 53
Score = 42.2 bits (100), Expect = 3e-06
Identities = 14/41 (34%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Query: 2 FKCPQCGALLKNIWSLREHI-MIHTGERPHVCHVCSKSFRN 41
+ C CG L HI +HT ERPH C V +
Sbjct: 13 YICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSS 53
Score = 36.8 bits (86), Expect = 2e-04
Identities = 14/79 (17%), Positives = 25/79 (31%), Gaps = 28/79 (35%)
Query: 77 HIRTHTDEKKYMCELCGAEFAQWATLYNHKFTHNDIKFKCNYCEKVYNNPSNLQRHIK-T 135
+ + K Y+C+ CG F++ P +L HIK
Sbjct: 3 SGSSGSVGKPYICQSCGKGFSR---------------------------PDHLNGHIKQV 35
Query: 136 HTDNSLYICEICGKDFGTA 154
HT + C++ +
Sbjct: 36 HTSERPHKCQVWVSGPSSG 54
Score = 34.5 bits (80), Expect = 0.002
Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Query: 132 HIKTHTDNSLYICEICGKDFGTARYLKRH-KDTHNSVNTFVCEVCNTGF 179
+ + YIC+ CGK F +L H K H S C+V +G
Sbjct: 3 SGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGP 51
Score = 25.2 bits (56), Expect = 4.1
Identities = 8/31 (25%), Positives = 13/31 (41%)
Query: 160 HKDTHNSVNTFVCEVCNTGFKVKKHLTQHYK 190
+ + ++C+ C GF HL H K
Sbjct: 3 SGSSGSVGKPYICQSCGKGFSRPDHLNGHIK 33
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc
finger, dimer, protein-DNA complex, cooperativity,
transcription/DNA complex; 2.35A {Mus musculus} SCOP:
g.37.1.1 g.37.1.1
Length = 73
Score = 55.4 bits (134), Expect = 8e-11
Identities = 24/62 (38%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Query: 23 IHTGERPHVCHV--CSKSFRNRGKLNVHYKRVHERIRTHQCNHCGRAFSDKSNLTVHIRT 80
+ RP+ C V C + F +L H R+H + QC C R FS +LT HIRT
Sbjct: 13 VVPKMRPYACPVESCDRRFSRSDELTRHI-RIHTGQKPFQCRICMRNFSRSDHLTTHIRT 71
Query: 81 HT 82
HT
Sbjct: 72 HT 73
Score = 47.7 bits (114), Expect = 5e-08
Identities = 22/64 (34%), Positives = 29/64 (45%), Gaps = 4/64 (6%)
Query: 48 HYKRVHERIRTHQCNH--CGRAFSDKSNLTVHIRTHTDEKKYMCELCGAEFAQWATLYNH 105
+Y R + C C R FS LT HIR HT +K + C +C F++ L H
Sbjct: 11 NYVVPKMR--PYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTH 68
Query: 106 KFTH 109
TH
Sbjct: 69 IRTH 72
Score = 45.4 bits (108), Expect = 4e-07
Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 4/69 (5%)
Query: 127 SNLQRHIKTHTDNSLYIC--EICGKDFGTARYLKRHKDTHNSVNTFVCEVCNTGFKVKKH 184
+NL ++ Y C E C + F + L RH H F C +C F H
Sbjct: 7 NNLLNYVVPKMRP--YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDH 64
Query: 185 LTQHYKSHS 193
LT H ++H+
Sbjct: 65 LTTHIRTHT 73
Score = 42.3 bits (100), Expect = 5e-06
Identities = 19/97 (19%), Positives = 34/97 (35%), Gaps = 27/97 (27%)
Query: 68 FSDKSNLTVHIRTHTDEKKYMCELCGAEFAQWATLYNHKFTHNDIKFKCNYCEKVYNNPS 127
+NL ++ + Y C + C++ ++
Sbjct: 3 PHPMNNLLNYVVPK--MRPYACPVES-------------------------CDRRFSRSD 35
Query: 128 NLQRHIKTHTDNSLYICEICGKDFGTARYLKRHKDTH 164
L RHI+ HT + C IC ++F + +L H TH
Sbjct: 36 ELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Score = 38.4 bits (90), Expect = 1e-04
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 17 LREHIMIHTGERPHVCHVCSKSFRNRGKLNVHYKR 51
L HI IHTG++P C +C ++F L H +
Sbjct: 37 LTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT 71
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 54.4 bits (132), Expect = 8e-11
Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 4/42 (9%)
Query: 52 VHERIRT----HQCNHCGRAFSDKSNLTVHIRTHTDEKKYMC 89
T ++CN C +AF+ KSNL VH RTHT E
Sbjct: 2 SSGSSGTGEKPYECNECQKAFNTKSNLMVHQRTHTGESGPSS 43
Score = 37.5 bits (88), Expect = 1e-04
Identities = 11/34 (32%), Positives = 14/34 (41%)
Query: 76 VHIRTHTDEKKYMCELCGAEFAQWATLYNHKFTH 109
+ T EK Y C C F + L H+ TH
Sbjct: 2 SSGSSGTGEKPYECNECQKAFNTKSNLMVHQRTH 35
Score = 29.4 bits (67), Expect = 0.11
Identities = 8/31 (25%), Positives = 12/31 (38%)
Query: 2 FKCPQCGALLKNIWSLREHIMIHTGERPHVC 32
++C +C +L H HTGE
Sbjct: 13 YECNECQKAFNTKSNLMVHQRTHTGESGPSS 43
Score = 28.6 bits (65), Expect = 0.22
Identities = 11/33 (33%), Positives = 13/33 (39%)
Query: 132 HIKTHTDNSLYICEICGKDFGTARYLKRHKDTH 164
+ T Y C C K F T L H+ TH
Sbjct: 3 SGSSGTGEKPYECNECQKAFNTKSNLMVHQRTH 35
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 52.9 bits (128), Expect = 3e-10
Identities = 16/41 (39%), Positives = 19/41 (46%), Gaps = 4/41 (9%)
Query: 53 HERIRT----HQCNHCGRAFSDKSNLTVHIRTHTDEKKYMC 89
T + CN CG+AF KS L +H RTHT E
Sbjct: 3 SGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSS 43
Score = 35.9 bits (84), Expect = 5e-04
Identities = 11/33 (33%), Positives = 14/33 (42%)
Query: 77 HIRTHTDEKKYMCELCGAEFAQWATLYNHKFTH 109
+ T K Y+C CG F + L H TH
Sbjct: 3 SGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTH 35
Score = 31.3 bits (72), Expect = 0.017
Identities = 12/34 (35%), Positives = 15/34 (44%)
Query: 131 RHIKTHTDNSLYICEICGKDFGTARYLKRHKDTH 164
+ T Y+C CGK F + YL H TH
Sbjct: 2 SSGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTH 35
Score = 30.5 bits (70), Expect = 0.033
Identities = 9/31 (29%), Positives = 13/31 (41%)
Query: 2 FKCPQCGALLKNIWSLREHIMIHTGERPHVC 32
+ C +CG ++ L H HTGE
Sbjct: 13 YVCNECGKAFRSKSYLIIHTRTHTGESGPSS 43
Score = 24.0 bits (53), Expect = 8.6
Identities = 8/34 (23%), Positives = 15/34 (44%)
Query: 159 RHKDTHNSVNTFVCEVCNTGFKVKKHLTQHYKSH 192
+ + +VC C F+ K +L H ++H
Sbjct: 2 SSGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTH 35
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 52.9 bits (128), Expect = 3e-10
Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 4/42 (9%)
Query: 53 HERIRT----HQCNHCGRAFSDKSNLTVHIRTHTDEKKYMCE 90
T +C+ C +AF+ KSNL VH RTHT EK
Sbjct: 3 SGSSGTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGPS 44
Score = 35.9 bits (84), Expect = 5e-04
Identities = 10/33 (30%), Positives = 14/33 (42%)
Query: 77 HIRTHTDEKKYMCELCGAEFAQWATLYNHKFTH 109
+ T EK + C C F + L H+ TH
Sbjct: 3 SGSSGTGEKPFECSECQKAFNTKSNLIVHQRTH 35
Score = 30.1 bits (69), Expect = 0.057
Identities = 10/34 (29%), Positives = 13/34 (38%)
Query: 131 RHIKTHTDNSLYICEICGKDFGTARYLKRHKDTH 164
+ T + C C K F T L H+ TH
Sbjct: 2 SSGSSGTGEKPFECSECQKAFNTKSNLIVHQRTH 35
Score = 29.4 bits (67), Expect = 0.10
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 2 FKCPQCGALLKNIWSLREHIMIHTGERPHVC 32
F+C +C +L H HTGE+P
Sbjct: 13 FECSECQKAFNTKSNLIVHQRTHTGEKPSGP 43
Score = 25.1 bits (56), Expect = 3.7
Identities = 8/34 (23%), Positives = 12/34 (35%)
Query: 159 RHKDTHNSVNTFVCEVCNTGFKVKKHLTQHYKSH 192
+ F C C F K +L H ++H
Sbjct: 2 SSGSSGTGEKPFECSECQKAFNTKSNLIVHQRTH 35
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 52.6 bits (127), Expect = 4e-10
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 4/42 (9%)
Query: 53 HERIRT----HQCNHCGRAFSDKSNLTVHIRTHTDEKKYMCE 90
+ C+ CG+AFS KS L +H+RTH+ EK
Sbjct: 3 SGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGPS 44
Score = 36.4 bits (85), Expect = 3e-04
Identities = 11/33 (33%), Positives = 14/33 (42%)
Query: 77 HIRTHTDEKKYMCELCGAEFAQWATLYNHKFTH 109
+ EK Y C CG F+ + L H TH
Sbjct: 3 SGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTH 35
Score = 32.1 bits (74), Expect = 0.012
Identities = 11/34 (32%), Positives = 13/34 (38%)
Query: 131 RHIKTHTDNSLYICEICGKDFGTARYLKRHKDTH 164
+ Y C CGK F + YL H TH
Sbjct: 2 SSGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTH 35
Score = 29.4 bits (67), Expect = 0.11
Identities = 9/31 (29%), Positives = 15/31 (48%)
Query: 2 FKCPQCGALLKNIWSLREHIMIHTGERPHVC 32
+ C +CG + L H+ H+GE+P
Sbjct: 13 YGCSECGKAFSSKSYLIIHMRTHSGEKPSGP 43
Score = 24.8 bits (55), Expect = 4.6
Identities = 8/35 (22%), Positives = 13/35 (37%)
Query: 159 RHKDTHNSVNTFVCEVCNTGFKVKKHLTQHYKSHS 193
+ + C C F K +L H ++HS
Sbjct: 2 SSGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHS 36
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 52.1 bits (126), Expect = 6e-10
Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 4/43 (9%)
Query: 52 VHERIRT----HQCNHCGRAFSDKSNLTVHIRTHTDEKKYMCE 90
T ++C+ CG+AFS + +L+VH R H+ +K
Sbjct: 2 SSGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGPS 44
Score = 35.6 bits (83), Expect = 7e-04
Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 76 VHIRTHTDEKKYMCELCGAEFAQWATLYNHKFTHNDIK-FKCN 117
+ T EK Y C +CG F+ +L H+ H+ K +
Sbjct: 2 SSGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGPS 44
Score = 30.2 bits (69), Expect = 0.049
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 2 FKCPQCGALLKNIWSLREHIMIHTGERPHVC 32
++C CG + SL H IH+G++P
Sbjct: 13 YECSVCGKAFSHRQSLSVHQRIHSGKKPSGP 43
Score = 27.1 bits (61), Expect = 0.70
Identities = 10/34 (29%), Positives = 14/34 (41%)
Query: 131 RHIKTHTDNSLYICEICGKDFGTARYLKRHKDTH 164
+ T Y C +CGK F + L H+ H
Sbjct: 2 SSGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIH 35
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 52.1 bits (126), Expect = 6e-10
Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 4/42 (9%)
Query: 52 VHERIRT----HQCNHCGRAFSDKSNLTVHIRTHTDEKKYMC 89
T ++C+ CG+AFS K L H RTH EK
Sbjct: 2 SSGSSGTGENPYECHECGKAFSRKYQLISHQRTHAGEKPSGP 43
Score = 37.1 bits (87), Expect = 2e-04
Identities = 12/43 (27%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 76 VHIRTHTDEKKYMCELCGAEFAQWATLYNHKFTHNDIK-FKCN 117
+ T E Y C CG F++ L +H+ TH K +
Sbjct: 2 SSGSSGTGENPYECHECGKAFSRKYQLISHQRTHAGEKPSGPS 44
Score = 30.2 bits (69), Expect = 0.054
Identities = 9/31 (29%), Positives = 14/31 (45%)
Query: 2 FKCPQCGALLKNIWSLREHIMIHTGERPHVC 32
++C +CG + L H H GE+P
Sbjct: 13 YECHECGKAFSRKYQLISHQRTHAGEKPSGP 43
Score = 27.5 bits (62), Expect = 0.43
Identities = 11/34 (32%), Positives = 14/34 (41%)
Query: 131 RHIKTHTDNSLYICEICGKDFGTARYLKRHKDTH 164
+ T + Y C CGK F L H+ TH
Sbjct: 2 SSGSSGTGENPYECHECGKAFSRKYQLISHQRTH 35
Score = 24.0 bits (53), Expect = 9.8
Identities = 8/34 (23%), Positives = 12/34 (35%)
Query: 159 RHKDTHNSVNTFVCEVCNTGFKVKKHLTQHYKSH 192
+ N + C C F K L H ++H
Sbjct: 2 SSGSSGTGENPYECHECGKAFSRKYQLISHQRTH 35
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 73
Score = 52.7 bits (126), Expect = 7e-10
Identities = 16/72 (22%), Positives = 25/72 (34%), Gaps = 8/72 (11%)
Query: 16 SLREHIMIHTGERPHVCHVCSKSFRNRGKLNVHYKRVHERIRTHQCNHCGRAFSDKSNLT 75
S + IH G+R C C F R L+ R +T C C + ++ L
Sbjct: 5 SSGKRQKIHLGDRSQKCSKCGIIFIRRSTLS--------RRKTPMCEKCRKDSCQEAALN 56
Query: 76 VHIRTHTDEKKY 87
+ +K
Sbjct: 57 KDEGNESGKKTS 68
Score = 44.7 bits (105), Expect = 7e-07
Identities = 12/66 (18%), Positives = 21/66 (31%), Gaps = 6/66 (9%)
Query: 72 SNLTVHIRTHTDEKKYMCELCGAEFAQWATLYNHKFTHNDIKFKCNYCEKVYNNPSNLQR 131
+ + H ++ C CG F + +TL K C C K + L +
Sbjct: 4 GSSGKRQKIHLGDRSQKCSKCGIIFIRRSTLSRRK------TPMCEKCRKDSCQEAALNK 57
Query: 132 HIKTHT 137
+
Sbjct: 58 DEGNES 63
Score = 40.0 bits (93), Expect = 3e-05
Identities = 13/69 (18%), Positives = 23/69 (33%), Gaps = 7/69 (10%)
Query: 125 NPSNLQRHIKTHTDNSLYICEICGKDFGTARYLKRHKDTHNSVNTFVCEVCNTGFKVKKH 184
+ + + K H + C CG F + T + T +CE C +
Sbjct: 2 SSGSSGKRQKIHLGDRSQKCSKCGIIF-------IRRSTLSRRKTPMCEKCRKDSCQEAA 54
Query: 185 LTQHYKSHS 193
L + + S
Sbjct: 55 LNKDEGNES 63
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 52.2 bits (126), Expect = 7e-10
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
Query: 53 HERIRT----HQCNHCGRAFSDKSNLTVHIRTHTDEKKYMC 89
T ++CN CG+AF +S+L +H TH+ EK
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGP 43
Score = 36.4 bits (85), Expect = 3e-04
Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 77 HIRTHTDEKKYMCELCGAEFAQWATLYNHKFTHNDIK-FKCN 117
+ T EK Y C CG F ++L H+ TH+ K +
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGPS 44
Score = 31.4 bits (72), Expect = 0.018
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 2 FKCPQCGALLKNIWSLREHIMIHTGERPHVC 32
+KC +CG + SL H H+GE+P
Sbjct: 13 YKCNECGKAFRARSSLAIHQATHSGEKPSGP 43
Score = 28.7 bits (65), Expect = 0.18
Identities = 11/34 (32%), Positives = 13/34 (38%)
Query: 131 RHIKTHTDNSLYICEICGKDFGTARYLKRHKDTH 164
+ T Y C CGK F L H+ TH
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFRARSSLAIHQATH 35
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.8 bits (125), Expect = 7e-10
Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 4/43 (9%)
Query: 52 VHERIRT----HQCNHCGRAFSDKSNLTVHIRTHTDEKKYMCE 90
+ + CN CG+ FS KS L+ H RTHT EK
Sbjct: 2 SSGSSGSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGPS 44
Score = 38.7 bits (91), Expect = 4e-05
Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 76 VHIRTHTDEKKYMCELCGAEFAQWATLYNHKFTHNDIK-FKCN 117
+ + EK Y C CG F+Q + L H+ TH K +
Sbjct: 2 SSGSSGSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGPS 44
Score = 29.8 bits (68), Expect = 0.080
Identities = 10/33 (30%), Positives = 13/33 (39%)
Query: 132 HIKTHTDNSLYICEICGKDFGTARYLKRHKDTH 164
+ + Y C CGK F L H+ TH
Sbjct: 3 SGSSGSGEKPYGCNECGKTFSQKSILSAHQRTH 35
Score = 29.0 bits (66), Expect = 0.12
Identities = 10/31 (32%), Positives = 13/31 (41%)
Query: 2 FKCPQCGALLKNIWSLREHIMIHTGERPHVC 32
+ C +CG L H HTGE+P
Sbjct: 13 YGCNECGKTFSQKSILSAHQRTHTGEKPSGP 43
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Length = 46
Score = 51.8 bits (125), Expect = 8e-10
Identities = 14/41 (34%), Positives = 18/41 (43%), Gaps = 4/41 (9%)
Query: 53 HERIRT----HQCNHCGRAFSDKSNLTVHIRTHTDEKKYMC 89
T + C+ C + FS KS L VH R+HT K
Sbjct: 3 SGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGP 43
Score = 35.6 bits (83), Expect = 6e-04
Identities = 10/42 (23%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 77 HIRTHTDEKKYMCELCGAEFAQWATLYNHKFTHNDIK-FKCN 117
+ T K Y C C F+ + L H+ +H +K +
Sbjct: 3 SGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGPS 44
Score = 29.4 bits (67), Expect = 0.10
Identities = 9/34 (26%), Positives = 12/34 (35%)
Query: 131 RHIKTHTDNSLYICEICGKDFGTARYLKRHKDTH 164
+ T Y C C K F L H+ +H
Sbjct: 2 SSGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSH 35
Score = 29.0 bits (66), Expect = 0.12
Identities = 9/31 (29%), Positives = 11/31 (35%)
Query: 2 FKCPQCGALLKNIWSLREHIMIHTGERPHVC 32
+ C QC L H HTG +P
Sbjct: 13 YGCSQCAKTFSLKSQLIVHQRSHTGVKPSGP 43
Score = 25.2 bits (56), Expect = 3.5
Identities = 9/34 (26%), Positives = 13/34 (38%)
Query: 159 RHKDTHNSVNTFVCEVCNTGFKVKKHLTQHYKSH 192
+ V + C C F +K L H +SH
Sbjct: 2 SSGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSH 35
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.7 bits (125), Expect = 9e-10
Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 4/43 (9%)
Query: 52 VHERIRT----HQCNHCGRAFSDKSNLTVHIRTHTDEKKYMCE 90
T ++C+ C +AFS ++LT H R H+ EK
Sbjct: 2 SSGSSGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGPS 44
Score = 37.5 bits (88), Expect = 1e-04
Identities = 12/43 (27%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 76 VHIRTHTDEKKYMCELCGAEFAQWATLYNHKFTHNDIK-FKCN 117
+ T EK Y C++C F+ A+L H+ H+ K +
Sbjct: 2 SSGSSGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGPS 44
Score = 30.9 bits (71), Expect = 0.031
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 2 FKCPQCGALLKNIWSLREHIMIHTGERPHVC 32
++C C + SL +H +H+GE+P
Sbjct: 13 YECDVCRKAFSHHASLTQHQRVHSGEKPSGP 43
Score = 27.1 bits (61), Expect = 0.58
Identities = 9/33 (27%), Positives = 14/33 (42%)
Query: 132 HIKTHTDNSLYICEICGKDFGTARYLKRHKDTH 164
+ T Y C++C K F L +H+ H
Sbjct: 3 SGSSGTGEKPYECDVCRKAFSHHASLTQHQRVH 35
>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 45
Score = 51.4 bits (124), Expect = 1e-09
Identities = 15/41 (36%), Positives = 18/41 (43%), Gaps = 4/41 (9%)
Query: 53 HERIRT----HQCNHCGRAFSDKSNLTVHIRTHTDEKKYMC 89
T +C HCG++F K NL H R HT EK
Sbjct: 3 SGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPS 43
Score = 35.6 bits (83), Expect = 6e-04
Identities = 10/42 (23%), Positives = 15/42 (35%), Gaps = 1/42 (2%)
Query: 77 HIRTHTDEKKYMCELCGAEFAQWATLYNHKFTHNDIK-FKCN 117
+ T +K + C CG F L H+ H K +
Sbjct: 3 SGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPSS 44
Score = 30.2 bits (69), Expect = 0.053
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 2 FKCPQCGALLKNIWSLREHIMIHTGERPHVC 32
F+C CG + +L H IHTGE+
Sbjct: 13 FECTHCGKSFRAKGNLVTHQRIHTGEKSGPS 43
Score = 26.7 bits (60), Expect = 0.78
Identities = 9/33 (27%), Positives = 12/33 (36%)
Query: 132 HIKTHTDNSLYICEICGKDFGTARYLKRHKDTH 164
+ T + C CGK F L H+ H
Sbjct: 3 SGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIH 35
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.4 bits (124), Expect = 1e-09
Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 4/42 (9%)
Query: 52 VHERIRT----HQCNHCGRAFSDKSNLTVHIRTHTDEKKYMC 89
T ++C+ CG++F+ KS L VH + HT EK
Sbjct: 2 SSGSSGTGEKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGP 43
Score = 34.8 bits (81), Expect = 0.001
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 76 VHIRTHTDEKKYMCELCGAEFAQWATLYNHKFTH 109
+ T EK Y C +CG F + + L+ H+ H
Sbjct: 2 SSGSSGTGEKPYECSICGKSFTKKSQLHVHQQIH 35
Score = 29.4 bits (67), Expect = 0.10
Identities = 11/31 (35%), Positives = 14/31 (45%)
Query: 2 FKCPQCGALLKNIWSLREHIMIHTGERPHVC 32
++C CG L H IHTGE+P
Sbjct: 13 YECSICGKSFTKKSQLHVHQQIHTGEKPSGP 43
Score = 27.9 bits (63), Expect = 0.36
Identities = 11/34 (32%), Positives = 13/34 (38%)
Query: 131 RHIKTHTDNSLYICEICGKDFGTARYLKRHKDTH 164
+ T Y C ICGK F L H+ H
Sbjct: 2 SSGSSGTGEKPYECSICGKSFTKKSQLHVHQQIH 35
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.4 bits (124), Expect = 1e-09
Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 4/42 (9%)
Query: 53 HERIRT----HQCNHCGRAFSDKSNLTVHIRTHTDEKKYMCE 90
T ++CN CG+AF SNLT H HT EK
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGPS 44
Score = 36.0 bits (84), Expect = 5e-04
Identities = 12/42 (28%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Query: 77 HIRTHTDEKKYMCELCGAEFAQWATLYNHKFTHNDIK-FKCN 117
+ T EK Y C CG F + L H+ H K +
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGPS 44
Score = 31.3 bits (72), Expect = 0.023
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 2 FKCPQCGALLKNIWSLREHIMIHTGERPHVC 32
+KC +CG + +L H +IHTGE+P
Sbjct: 13 YKCNECGKAFRAHSNLTTHQVIHTGEKPSGP 43
Score = 27.9 bits (63), Expect = 0.41
Identities = 10/33 (30%), Positives = 12/33 (36%)
Query: 132 HIKTHTDNSLYICEICGKDFGTARYLKRHKDTH 164
+ T Y C CGK F L H+ H
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIH 35
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.4 bits (124), Expect = 1e-09
Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 4/42 (9%)
Query: 52 VHERIRT----HQCNHCGRAFSDKSNLTVHIRTHTDEKKYMC 89
T ++C+ CG++F KS L VH R HT E
Sbjct: 2 SSGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGP 43
Score = 34.4 bits (80), Expect = 0.001
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 76 VHIRTHTDEKKYMCELCGAEFAQWATLYNHKFTH 109
+ T EK Y C CG F + + L+ H+ H
Sbjct: 2 SSGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIH 35
Score = 29.8 bits (68), Expect = 0.066
Identities = 11/31 (35%), Positives = 13/31 (41%)
Query: 2 FKCPQCGALLKNIWSLREHIMIHTGERPHVC 32
++C CG L H IHTGE P
Sbjct: 13 YECSDCGKSFIKKSQLHVHQRIHTGENPSGP 43
Score = 27.1 bits (61), Expect = 0.59
Identities = 10/33 (30%), Positives = 12/33 (36%)
Query: 132 HIKTHTDNSLYICEICGKDFGTARYLKRHKDTH 164
+ T Y C CGK F L H+ H
Sbjct: 3 SGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIH 35
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.4 bits (124), Expect = 1e-09
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 4/42 (9%)
Query: 53 HERIRT----HQCNHCGRAFSDKSNLTVHIRTHTDEKKYMCE 90
T ++C CG+AF+D+SNL H + HT EK
Sbjct: 3 SGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGPS 44
Score = 35.2 bits (82), Expect = 0.001
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 77 HIRTHTDEKKYMCELCGAEFAQWATLYNHKFTH 109
+ T EK Y C CG F + L+ H+ H
Sbjct: 3 SGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIH 35
Score = 30.2 bits (69), Expect = 0.051
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 2 FKCPQCGALLKNIWSLREHIMIHTGERPHVC 32
++C +CG + +L H IHTGE+P
Sbjct: 13 YRCAECGKAFTDRSNLFTHQKIHTGEKPSGP 43
Score = 27.5 bits (62), Expect = 0.55
Identities = 10/34 (29%), Positives = 12/34 (35%)
Query: 131 RHIKTHTDNSLYICEICGKDFGTARYLKRHKDTH 164
+ T Y C CGK F L H+ H
Sbjct: 2 SSGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIH 35
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 46
Score = 51.0 bits (123), Expect = 1e-09
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 4/41 (9%)
Query: 53 HERIRT----HQCNHCGRAFSDKSNLTVHIRTHTDEKKYMC 89
T ++C CG+AF KS+L H R+HT EK
Sbjct: 3 SGSSGTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGP 43
Score = 37.5 bits (88), Expect = 1e-04
Identities = 10/42 (23%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 77 HIRTHTDEKKYMCELCGAEFAQWATLYNHKFTHNDIK-FKCN 117
+ T ++ Y C CG F ++L H+ +H K +
Sbjct: 3 SGSSGTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGPS 44
Score = 30.6 bits (70), Expect = 0.033
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 2 FKCPQCGALLKNIWSLREHIMIHTGERPHVC 32
++C +CG K SL H HTGE+P
Sbjct: 13 YECIECGKAFKTKSSLICHRRSHTGEKPSGP 43
Score = 29.8 bits (68), Expect = 0.078
Identities = 11/34 (32%), Positives = 14/34 (41%)
Query: 131 RHIKTHTDNSLYICEICGKDFGTARYLKRHKDTH 164
+ T Y C CGK F T L H+ +H
Sbjct: 2 SSGSSGTGQRPYECIECGKAFKTKSSLICHRRSH 35
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2eoi_A
Length = 46
Score = 51.0 bits (123), Expect = 1e-09
Identities = 14/42 (33%), Positives = 17/42 (40%), Gaps = 4/42 (9%)
Query: 53 HERIRT----HQCNHCGRAFSDKSNLTVHIRTHTDEKKYMCE 90
T +C CG++FS S L H R HT EK
Sbjct: 3 SGSSGTGEKPFECAECGKSFSISSQLATHQRIHTGEKPSGPS 44
Score = 34.0 bits (79), Expect = 0.002
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 77 HIRTHTDEKKYMCELCGAEFAQWATLYNHKFTH 109
+ T EK + C CG F+ + L H+ H
Sbjct: 3 SGSSGTGEKPFECAECGKSFSISSQLATHQRIH 35
Score = 30.9 bits (71), Expect = 0.027
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 2 FKCPQCGALLKNIWSLREHIMIHTGERPHVC 32
F+C +CG L H IHTGE+P
Sbjct: 13 FECAECGKSFSISSQLATHQRIHTGEKPSGP 43
Score = 29.0 bits (66), Expect = 0.12
Identities = 9/34 (26%), Positives = 13/34 (38%)
Query: 131 RHIKTHTDNSLYICEICGKDFGTARYLKRHKDTH 164
+ T + C CGK F + L H+ H
Sbjct: 2 SSGSSGTGEKPFECAECGKSFSISSQLATHQRIH 35
>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.0 bits (123), Expect = 1e-09
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 4/42 (9%)
Query: 53 HERIRT----HQCNHCGRAFSDKSNLTVHIRTHTDEKKYMCE 90
T ++CN CG+AFS +S+LT H HT +K
Sbjct: 3 SGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGPS 44
Score = 36.0 bits (84), Expect = 5e-04
Identities = 12/42 (28%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 77 HIRTHTDEKKYMCELCGAEFAQWATLYNHKFTHNDIK-FKCN 117
+ T EK Y C CG F+ ++L H+ H K +
Sbjct: 3 SGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGPS 44
Score = 30.6 bits (70), Expect = 0.034
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 2 FKCPQCGALLKNIWSLREHIMIHTGERPHVC 32
++C QCG SL H IHTG++P
Sbjct: 13 YECNQCGKAFSVRSSLTTHQAIHTGKKPSGP 43
Score = 28.7 bits (65), Expect = 0.20
Identities = 10/34 (29%), Positives = 12/34 (35%)
Query: 131 RHIKTHTDNSLYICEICGKDFGTARYLKRHKDTH 164
+ T Y C CGK F L H+ H
Sbjct: 2 SSGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIH 35
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.0 bits (123), Expect = 2e-09
Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
Query: 53 HERIRT----HQCNHCGRAFSDKSNLTVHIRTHTDEKKYMC 89
T ++C+ CG+AF+ KS L +H ++HT E+
Sbjct: 3 SGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGP 43
Score = 35.9 bits (84), Expect = 5e-04
Identities = 11/42 (26%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 77 HIRTHTDEKKYMCELCGAEFAQWATLYNHKFTHNDIK-FKCN 117
+ T EK Y C CG F + + L+ H+ +H + +
Sbjct: 3 SGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGPS 44
Score = 32.5 bits (75), Expect = 0.008
Identities = 11/31 (35%), Positives = 12/31 (38%)
Query: 2 FKCPQCGALLKNIWSLREHIMIHTGERPHVC 32
+KC CG L H HTGER
Sbjct: 13 YKCSDCGKAFTRKSGLHIHQQSHTGERHSGP 43
Score = 30.2 bits (69), Expect = 0.048
Identities = 10/34 (29%), Positives = 13/34 (38%)
Query: 131 RHIKTHTDNSLYICEICGKDFGTARYLKRHKDTH 164
+ T Y C CGK F L H+ +H
Sbjct: 2 SSGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSH 35
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 50.6 bits (122), Expect = 2e-09
Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 4/42 (9%)
Query: 53 HERIRT----HQCNHCGRAFSDKSNLTVHIRTHTDEKKYMCE 90
T ++C C +AF+ K++L H +THT EK
Sbjct: 3 SGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGPS 44
Score = 35.6 bits (83), Expect = 5e-04
Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 77 HIRTHTDEKKYMCELCGAEFAQWATLYNHKFTHNDIK-FKCN 117
+ T EK Y C++C F Q A L H+ TH K +
Sbjct: 3 SGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGPS 44
Score = 30.6 bits (70), Expect = 0.044
Identities = 9/31 (29%), Positives = 13/31 (41%)
Query: 2 FKCPQCGALLKNIWSLREHIMIHTGERPHVC 32
++C C L +H HTGE+P
Sbjct: 13 YECKVCSKAFTQKAHLAQHQKTHTGEKPSGP 43
Score = 28.3 bits (64), Expect = 0.23
Identities = 10/34 (29%), Positives = 16/34 (47%)
Query: 131 RHIKTHTDNSLYICEICGKDFGTARYLKRHKDTH 164
+ T Y C++C K F +L +H+ TH
Sbjct: 2 SSGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTH 35
Score = 24.8 bits (55), Expect = 3.9
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 159 RHKDTHNSVNTFVCEVCNTGFKVKKHLTQHYKSH 192
+ + C+VC+ F K HL QH K+H
Sbjct: 2 SSGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTH 35
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 50.6 bits (122), Expect = 2e-09
Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 4/42 (9%)
Query: 53 HERIRT----HQCNHCGRAFSDKSNLTVHIRTHTDEKKYMCE 90
T + C CG+AF+ +SNL H + HT +K
Sbjct: 3 SGSSGTGEKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGPS 44
Score = 34.4 bits (80), Expect = 0.001
Identities = 12/42 (28%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 77 HIRTHTDEKKYMCELCGAEFAQWATLYNHKFTHNDIK-FKCN 117
+ T EK Y+C CG F + L H+ H K +
Sbjct: 3 SGSSGTGEKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGPS 44
Score = 30.2 bits (69), Expect = 0.050
Identities = 9/31 (29%), Positives = 15/31 (48%)
Query: 2 FKCPQCGALLKNIWSLREHIMIHTGERPHVC 32
+ C +CG +L +H IHT ++P
Sbjct: 13 YICAECGKAFTIRSNLIKHQKIHTKQKPSGP 43
Score = 27.5 bits (62), Expect = 0.54
Identities = 11/33 (33%), Positives = 14/33 (42%)
Query: 132 HIKTHTDNSLYICEICGKDFGTARYLKRHKDTH 164
+ T YIC CGK F L +H+ H
Sbjct: 3 SGSSGTGEKPYICAECGKAFTIRSNLIKHQKIH 35
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 50.2 bits (121), Expect = 3e-09
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 4/41 (9%)
Query: 53 HERIRT----HQCNHCGRAFSDKSNLTVHIRTHTDEKKYMC 89
T + C CG+AF+D+SNL H + HT EK
Sbjct: 3 SGSSGTGERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGP 43
Score = 35.5 bits (83), Expect = 7e-04
Identities = 11/42 (26%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 77 HIRTHTDEKKYMCELCGAEFAQWATLYNHKFTHNDIK-FKCN 117
+ T E+ Y+C +CG F + L H+ H K +
Sbjct: 3 SGSSGTGERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGPS 44
Score = 30.5 bits (70), Expect = 0.041
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 2 FKCPQCGALLKNIWSLREHIMIHTGERPHVC 32
+ C CG + +L +H IHTGE+P
Sbjct: 13 YICTVCGKAFTDRSNLIKHQKIHTGEKPSGP 43
Score = 28.6 bits (65), Expect = 0.21
Identities = 11/34 (32%), Positives = 15/34 (44%)
Query: 131 RHIKTHTDNSLYICEICGKDFGTARYLKRHKDTH 164
+ T YIC +CGK F L +H+ H
Sbjct: 2 SSGSSGTGERPYICTVCGKAFTDRSNLIKHQKIH 35
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 50.2 bits (121), Expect = 3e-09
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 4/41 (9%)
Query: 53 HERIRT----HQCNHCGRAFSDKSNLTVHIRTHTDEKKYMC 89
T ++C+ CG+AF KS L++H R H EK
Sbjct: 3 SGSSGTGERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGP 43
Score = 35.2 bits (82), Expect = 8e-04
Identities = 13/42 (30%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 77 HIRTHTDEKKYMCELCGAEFAQWATLYNHKFTHNDIK-FKCN 117
+ T E+ Y C CG F Q +TL H+ H K +
Sbjct: 3 SGSSGTGERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGPS 44
Score = 29.8 bits (68), Expect = 0.080
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 2 FKCPQCGALLKNIWSLREHIMIHTGERPHVC 32
++C +CG +L H IH GE+P
Sbjct: 13 YECSECGKAFIQKSTLSMHQRIHRGEKPSGP 43
Score = 27.1 bits (61), Expect = 0.68
Identities = 10/33 (30%), Positives = 12/33 (36%)
Query: 132 HIKTHTDNSLYICEICGKDFGTARYLKRHKDTH 164
+ T Y C CGK F L H+ H
Sbjct: 3 SGSSGTGERHYECSECGKAFIQKSTLSMHQRIH 35
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 50.2 bits (121), Expect = 3e-09
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
Query: 53 HERIRT----HQCNHCGRAFSDKSNLTVHIRTHTDEKKYMC 89
T ++C+ CG+AF+ KS L +H R HT EK
Sbjct: 3 SGSSGTGERHYECSECGKAFARKSTLIMHQRIHTGEKPSGP 43
Score = 35.6 bits (83), Expect = 7e-04
Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 77 HIRTHTDEKKYMCELCGAEFAQWATLYNHKFTHNDIK-FKCN 117
+ T E+ Y C CG FA+ +TL H+ H K +
Sbjct: 3 SGSSGTGERHYECSECGKAFARKSTLIMHQRIHTGEKPSGPS 44
Score = 29.4 bits (67), Expect = 0.089
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 2 FKCPQCGALLKNIWSLREHIMIHTGERPHVC 32
++C +CG +L H IHTGE+P
Sbjct: 13 YECSECGKAFARKSTLIMHQRIHTGEKPSGP 43
Score = 28.6 bits (65), Expect = 0.22
Identities = 10/34 (29%), Positives = 12/34 (35%)
Query: 131 RHIKTHTDNSLYICEICGKDFGTARYLKRHKDTH 164
+ T Y C CGK F L H+ H
Sbjct: 2 SSGSSGTGERHYECSECGKAFARKSTLIMHQRIH 35
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 50.2 bits (121), Expect = 3e-09
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 59 HQCNHCGRAFSDKSNLTVHIRTHTDEKKYMC 89
C+ C +AFS KS L VH +TH +EK
Sbjct: 11 FGCSCCEKAFSSKSYLLVHQQTHAEEKPSGP 41
Score = 30.2 bits (69), Expect = 0.046
Identities = 10/40 (25%), Positives = 17/40 (42%), Gaps = 1/40 (2%)
Query: 79 RTHTDEKKYMCELCGAEFAQWATLYNHKFTHNDIK-FKCN 117
+ EK + C C F+ + L H+ TH + K +
Sbjct: 3 SGSSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGPS 42
Score = 30.2 bits (69), Expect = 0.054
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 114 FKCNYCEKVYNNPSNLQRHIKTHTDNSLYIC 144
F C+ CEK +++ S L H +TH +
Sbjct: 11 FGCSCCEKAFSSKSYLLVHQQTHAEEKPSGP 41
Score = 29.4 bits (67), Expect = 0.096
Identities = 8/31 (25%), Positives = 10/31 (32%)
Query: 2 FKCPQCGALLKNIWSLREHIMIHTGERPHVC 32
F C C + L H H E+P
Sbjct: 11 FGCSCCEKAFSSKSYLLVHQQTHAEEKPSGP 41
Score = 27.5 bits (62), Expect = 0.43
Identities = 9/31 (29%), Positives = 13/31 (41%)
Query: 134 KTHTDNSLYICEICGKDFGTARYLKRHKDTH 164
+ + C C K F + YL H+ TH
Sbjct: 3 SGSSGEKPFGCSCCEKAFSSKSYLLVHQQTH 33
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 50.2 bits (121), Expect = 3e-09
Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 4/42 (9%)
Query: 53 HERIRT----HQCNHCGRAFSDKSNLTVHIRTHTDEKKYMCE 90
T +C CG+AF+ KS L++H + HT EK
Sbjct: 3 SGSSGTGGKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGPS 44
Score = 34.4 bits (80), Expect = 0.002
Identities = 11/42 (26%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 77 HIRTHTDEKKYMCELCGAEFAQWATLYNHKFTHNDIK-FKCN 117
+ T K + C CG F + +TL H+ H K +
Sbjct: 3 SGSSGTGGKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGPS 44
Score = 29.8 bits (68), Expect = 0.062
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 2 FKCPQCGALLKNIWSLREHIMIHTGERPHVC 32
F+C +CG +L H IHTGE+P
Sbjct: 13 FECTECGKAFTRKSTLSMHQKIHTGEKPSGP 43
Score = 26.7 bits (60), Expect = 0.87
Identities = 9/34 (26%), Positives = 12/34 (35%)
Query: 131 RHIKTHTDNSLYICEICGKDFGTARYLKRHKDTH 164
+ T + C CGK F L H+ H
Sbjct: 2 SSGSSGTGGKHFECTECGKAFTRKSTLSMHQKIH 35
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 50.2 bits (121), Expect = 3e-09
Identities = 15/41 (36%), Positives = 18/41 (43%), Gaps = 4/41 (9%)
Query: 53 HERIRT----HQCNHCGRAFSDKSNLTVHIRTHTDEKKYMC 89
T H+C CG++FS S L VH R HT E
Sbjct: 3 SGSSGTGEKPHECRECGKSFSFNSQLIVHQRIHTGENPSGP 43
Score = 34.4 bits (80), Expect = 0.001
Identities = 10/42 (23%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Query: 77 HIRTHTDEKKYMCELCGAEFAQWATLYNHKFTHNDIK-FKCN 117
+ T EK + C CG F+ + L H+ H +
Sbjct: 3 SGSSGTGEKPHECRECGKSFSFNSQLIVHQRIHTGENPSGPS 44
Score = 30.2 bits (69), Expect = 0.050
Identities = 11/31 (35%), Positives = 13/31 (41%)
Query: 2 FKCPQCGALLKNIWSLREHIMIHTGERPHVC 32
+C +CG L H IHTGE P
Sbjct: 13 HECRECGKSFSFNSQLIVHQRIHTGENPSGP 43
Score = 27.9 bits (63), Expect = 0.31
Identities = 9/34 (26%), Positives = 12/34 (35%)
Query: 131 RHIKTHTDNSLYICEICGKDFGTARYLKRHKDTH 164
+ T + C CGK F L H+ H
Sbjct: 2 SSGSSGTGEKPHECRECGKSFSFNSQLIVHQRIH 35
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 50.2 bits (121), Expect = 3e-09
Identities = 12/43 (27%), Positives = 17/43 (39%), Gaps = 4/43 (9%)
Query: 52 VHERIRT----HQCNHCGRAFSDKSNLTVHIRTHTDEKKYMCE 90
T +C+ CG++F +S L H HT EK
Sbjct: 2 SSGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGPS 44
Score = 38.6 bits (91), Expect = 5e-05
Identities = 11/43 (25%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Query: 76 VHIRTHTDEKKYMCELCGAEFAQWATLYNHKFTHNDIK-FKCN 117
+ T EK + C++CG F + L H H K +
Sbjct: 2 SSGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGPS 44
Score = 31.7 bits (73), Expect = 0.015
Identities = 12/31 (38%), Positives = 14/31 (45%)
Query: 2 FKCPQCGALLKNIWSLREHIMIHTGERPHVC 32
FKC CG L H M+HT E+P
Sbjct: 13 FKCDICGKSFCGRSRLNRHSMVHTAEKPSGP 43
Score = 30.5 bits (70), Expect = 0.042
Identities = 11/33 (33%), Positives = 14/33 (42%)
Query: 132 HIKTHTDNSLYICEICGKDFGTARYLKRHKDTH 164
+ T + C+ICGK F L RH H
Sbjct: 3 SGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVH 35
Score = 24.8 bits (55), Expect = 4.9
Identities = 7/33 (21%), Positives = 12/33 (36%)
Query: 160 HKDTHNSVNTFVCEVCNTGFKVKKHLTQHYKSH 192
+ F C++C F + L +H H
Sbjct: 3 SGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVH 35
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 44
Score = 50.2 bits (121), Expect = 3e-09
Identities = 14/41 (34%), Positives = 18/41 (43%), Gaps = 4/41 (9%)
Query: 53 HERIRT----HQCNHCGRAFSDKSNLTVHIRTHTDEKKYMC 89
+ ++CN CG+AF KS L VH RTH
Sbjct: 3 SGSSGSGEKPYECNECGKAFIWKSLLIVHERTHAGVSGPSS 43
Score = 35.6 bits (83), Expect = 7e-04
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 77 HIRTHTDEKKYMCELCGAEFAQWATLYNHKFTH 109
+ + EK Y C CG F + L H+ TH
Sbjct: 3 SGSSGSGEKPYECNECGKAFIWKSLLIVHERTH 35
Score = 31.0 bits (71), Expect = 0.025
Identities = 7/31 (22%), Positives = 10/31 (32%)
Query: 2 FKCPQCGALLKNIWSLREHIMIHTGERPHVC 32
++C +CG L H H G
Sbjct: 13 YECNECGKAFIWKSLLIVHERTHAGVSGPSS 43
Score = 30.6 bits (70), Expect = 0.043
Identities = 10/34 (29%), Positives = 13/34 (38%)
Query: 131 RHIKTHTDNSLYICEICGKDFGTARYLKRHKDTH 164
+ + Y C CGK F L H+ TH
Sbjct: 2 SSGSSGSGEKPYECNECGKAFIWKSLLIVHERTH 35
Score = 24.0 bits (53), Expect = 9.0
Identities = 7/34 (20%), Positives = 12/34 (35%)
Query: 159 RHKDTHNSVNTFVCEVCNTGFKVKKHLTQHYKSH 192
+ + + C C F K L H ++H
Sbjct: 2 SSGSSGSGEKPYECNECGKAFIWKSLLIVHERTH 35
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 50.2 bits (121), Expect = 3e-09
Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 4/42 (9%)
Query: 53 HERIRT----HQCNHCGRAFSDKSNLTVHIRTHTDEKKYMCE 90
T + CN CG+AFS S+LT H HT EK
Sbjct: 3 SGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGPS 44
Score = 36.3 bits (85), Expect = 3e-04
Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 77 HIRTHTDEKKYMCELCGAEFAQWATLYNHKFTHNDIK-FKCN 117
+ T K YMC CG F+ +++L H+ H K +
Sbjct: 3 SGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGPS 44
Score = 31.3 bits (72), Expect = 0.020
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 2 FKCPQCGALLKNIWSLREHIMIHTGERPHVC 32
+ C +CG SL H +IHTGE+P
Sbjct: 13 YMCNECGKAFSVYSSLTTHQVIHTGEKPSGP 43
Score = 29.8 bits (68), Expect = 0.063
Identities = 10/34 (29%), Positives = 13/34 (38%)
Query: 131 RHIKTHTDNSLYICEICGKDFGTARYLKRHKDTH 164
+ T Y+C CGK F L H+ H
Sbjct: 2 SSGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIH 35
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 50.2 bits (121), Expect = 4e-09
Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 4/41 (9%)
Query: 53 HERIRT----HQCNHCGRAFSDKSNLTVHIRTHTDEKKYMC 89
T C+ CG+ F+ K+NL +H + HT E+
Sbjct: 3 SGSSGTGENPFICSECGKVFTHKTNLIIHQKIHTGERPSGP 43
Score = 34.8 bits (81), Expect = 0.001
Identities = 9/42 (21%), Positives = 15/42 (35%), Gaps = 1/42 (2%)
Query: 77 HIRTHTDEKKYMCELCGAEFAQWATLYNHKFTHNDIK-FKCN 117
+ T E ++C CG F L H+ H + +
Sbjct: 3 SGSSGTGENPFICSECGKVFTHKTNLIIHQKIHTGERPSGPS 44
Score = 30.2 bits (69), Expect = 0.049
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 2 FKCPQCGALLKNIWSLREHIMIHTGERPHVC 32
F C +CG + + +L H IHTGERP
Sbjct: 13 FICSECGKVFTHKTNLIIHQKIHTGERPSGP 43
Score = 27.8 bits (63), Expect = 0.32
Identities = 10/33 (30%), Positives = 14/33 (42%)
Query: 132 HIKTHTDNSLYICEICGKDFGTARYLKRHKDTH 164
+ T + +IC CGK F L H+ H
Sbjct: 3 SGSSGTGENPFICSECGKVFTHKTNLIIHQKIH 35
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 42
Score = 49.9 bits (120), Expect = 4e-09
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 4/39 (10%)
Query: 53 HERIRT----HQCNHCGRAFSDKSNLTVHIRTHTDEKKY 87
++C+ CG+AFS K +L VHIR HT
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPS 40
Score = 37.5 bits (88), Expect = 1e-04
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 77 HIRTHTDEKKYMCELCGAEFAQWATLYNHKFTH 109
+ EK Y C+ CG F+Q +L H H
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVH 34
Score = 30.6 bits (70), Expect = 0.035
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 2 FKCPQCGALLKNIWSLREHIMIHTGERPH 30
++C QCG SL HI +HTG P
Sbjct: 12 YRCDQCGKAFSQKGSLIVHIRVHTGSGPS 40
Score = 28.3 bits (64), Expect = 0.27
Identities = 9/33 (27%), Positives = 11/33 (33%)
Query: 132 HIKTHTDNSLYICEICGKDFGTARYLKRHKDTH 164
+ Y C+ CGK F L H H
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVH 34
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 49.9 bits (120), Expect = 4e-09
Identities = 11/45 (24%), Positives = 16/45 (35%), Gaps = 5/45 (11%)
Query: 53 HERIRT----HQCNHCGRAFSDKSNLTVHIRTHTDEKKYMCELCG 93
+ +C CG+ F S H R+H+ EK G
Sbjct: 3 SGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGPS-SG 46
Score = 36.0 bits (84), Expect = 5e-04
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 77 HIRTHTDEKKYMCELCGAEFAQWATLYNHKFTH 109
+ + EK + CE CG F + Y+H+ +H
Sbjct: 3 SGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSH 35
Score = 31.0 bits (71), Expect = 0.030
Identities = 10/31 (32%), Positives = 13/31 (41%)
Query: 2 FKCPQCGALLKNIWSLREHIMIHTGERPHVC 32
FKC +CG H H+GE+P
Sbjct: 13 FKCEECGKGFYTNSQCYSHQRSHSGEKPSGP 43
Score = 28.7 bits (65), Expect = 0.21
Identities = 9/33 (27%), Positives = 14/33 (42%)
Query: 132 HIKTHTDNSLYICEICGKDFGTARYLKRHKDTH 164
+ + + CE CGK F T H+ +H
Sbjct: 3 SGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSH 35
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 49.8 bits (120), Expect = 4e-09
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 4/41 (9%)
Query: 53 HERIRT----HQCNHCGRAFSDKSNLTVHIRTHTDEKKYMC 89
T ++C+ C ++F S+LTVH R HT EK
Sbjct: 3 SGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGP 43
Score = 36.0 bits (84), Expect = 5e-04
Identities = 11/42 (26%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 77 HIRTHTDEKKYMCELCGAEFAQWATLYNHKFTHNDIK-FKCN 117
+ T EK Y C++C F ++L H+ H K +
Sbjct: 3 SGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGPS 44
Score = 30.6 bits (70), Expect = 0.043
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 2 FKCPQCGALLKNIWSLREHIMIHTGERPHVC 32
+KC C + SL H IHTGE+P
Sbjct: 13 YKCDVCHKSFRYGSSLTVHQRIHTGEKPSGP 43
Score = 28.2 bits (64), Expect = 0.27
Identities = 9/33 (27%), Positives = 13/33 (39%)
Query: 132 HIKTHTDNSLYICEICGKDFGTARYLKRHKDTH 164
+ T Y C++C K F L H+ H
Sbjct: 3 SGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIH 35
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 49.8 bits (120), Expect = 4e-09
Identities = 11/41 (26%), Positives = 19/41 (46%), Gaps = 4/41 (9%)
Query: 53 HERIRT----HQCNHCGRAFSDKSNLTVHIRTHTDEKKYMC 89
T ++C CG+ ++ K NL +H + HT E+
Sbjct: 3 SGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGP 43
Score = 35.6 bits (83), Expect = 6e-04
Identities = 11/42 (26%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Query: 77 HIRTHTDEKKYMCELCGAEFAQWATLYNHKFTHNDIK-FKCN 117
+ T EK Y CE CG + L H+ H + +
Sbjct: 3 SGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGPS 44
Score = 31.7 bits (73), Expect = 0.017
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 2 FKCPQCGALLKNIWSLREHIMIHTGERPHVCH 33
+KC +CG + ++L H +HTGERP
Sbjct: 13 YKCEKCGKGYNSKFNLDMHQKVHTGERPSGPS 44
Score = 27.9 bits (63), Expect = 0.38
Identities = 10/33 (30%), Positives = 14/33 (42%)
Query: 132 HIKTHTDNSLYICEICGKDFGTARYLKRHKDTH 164
+ T Y CE CGK + + L H+ H
Sbjct: 3 SGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVH 35
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 49.9 bits (120), Expect = 4e-09
Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 4/42 (9%)
Query: 53 HERIRT----HQCNHCGRAFSDKSNLTVHIRTHTDEKKYMCE 90
T ++C CG+AF D S+ T H R HT ++
Sbjct: 3 SGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGPS 44
Score = 35.6 bits (83), Expect = 7e-04
Identities = 10/42 (23%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Query: 77 HIRTHTDEKKYMCELCGAEFAQWATLYNHKFTHNDIK-FKCN 117
+ T EK Y C CG F ++ H+ H + +
Sbjct: 3 SGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGPS 44
Score = 31.8 bits (73), Expect = 0.014
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 2 FKCPQCGALLKNIWSLREHIMIHTGERPHVC 32
+KC +CG + S +H +HTG+RP
Sbjct: 13 YKCMECGKAFGDNSSCTQHQRLHTGQRPSGP 43
Score = 27.5 bits (62), Expect = 0.50
Identities = 10/33 (30%), Positives = 13/33 (39%)
Query: 132 HIKTHTDNSLYICEICGKDFGTARYLKRHKDTH 164
+ T Y C CGK FG +H+ H
Sbjct: 3 SGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLH 35
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 49.4 bits (119), Expect = 5e-09
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
Query: 53 HERIRT----HQCNHCGRAFSDKSNLTVHIRTHTDEKKYMC 89
T ++C CG+AF+ K+NLT H R HT EK
Sbjct: 3 SGSSGTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGP 43
Score = 35.6 bits (83), Expect = 7e-04
Identities = 15/42 (35%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 77 HIRTHTDEKKYMCELCGAEFAQWATLYNHKFTHNDIK-FKCN 117
+ T EK Y C CG FAQ A L H+ H K +
Sbjct: 3 SGSSGTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGPS 44
Score = 30.2 bits (69), Expect = 0.055
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 2 FKCPQCGALLKNIWSLREHIMIHTGERPHVC 32
++C +CG +L +H IHTGE+P
Sbjct: 13 YRCGECGKAFAQKANLTQHQRIHTGEKPSGP 43
Score = 27.9 bits (63), Expect = 0.36
Identities = 10/34 (29%), Positives = 13/34 (38%)
Query: 131 RHIKTHTDNSLYICEICGKDFGTARYLKRHKDTH 164
+ T Y C CGK F L +H+ H
Sbjct: 2 SSGSSGTGEKPYRCGECGKAFAQKANLTQHQRIH 35
Score = 24.0 bits (53), Expect = 7.8
Identities = 9/34 (26%), Positives = 13/34 (38%)
Query: 159 RHKDTHNSVNTFVCEVCNTGFKVKKHLTQHYKSH 192
+ + C C F K +LTQH + H
Sbjct: 2 SSGSSGTGEKPYRCGECGKAFAQKANLTQHQRIH 35
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 49.4 bits (119), Expect = 5e-09
Identities = 14/42 (33%), Positives = 16/42 (38%), Gaps = 4/42 (9%)
Query: 53 HERIRT----HQCNHCGRAFSDKSNLTVHIRTHTDEKKYMCE 90
T + C CG+AF S L H R HT EK
Sbjct: 3 SGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGPS 44
Score = 35.2 bits (82), Expect = 8e-04
Identities = 13/42 (30%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 77 HIRTHTDEKKYMCELCGAEFAQWATLYNHKFTHNDIK-FKCN 117
+ T EK Y CE CG F + L H+ H K +
Sbjct: 3 SGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGPS 44
Score = 31.3 bits (72), Expect = 0.021
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 2 FKCPQCGALLKNIWSLREHIMIHTGERPHVC 32
+ C +CG + L+EH IHTGE+P
Sbjct: 13 YNCEECGKAFIHDSQLQEHQRIHTGEKPSGP 43
Score = 29.4 bits (67), Expect = 0.10
Identities = 11/34 (32%), Positives = 14/34 (41%)
Query: 131 RHIKTHTDNSLYICEICGKDFGTARYLKRHKDTH 164
+ T Y CE CGK F L+ H+ H
Sbjct: 2 SSGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIH 35
>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible
early growth response protein 1, TGFB-inducible early
growth response protein 1; NMR {Homo sapiens}
Length = 72
Score = 50.1 bits (120), Expect = 6e-09
Identities = 25/64 (39%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Query: 50 KRVHERIRTHQCNH--CGRAFSDKSNLTVHIRTHTDEKKYMC--ELCGAEFAQWATLYNH 105
+ RIR+H C+H CG+ + S+L H RTHT EK + C + C FA+ L H
Sbjct: 9 QIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRH 68
Query: 106 KFTH 109
+ TH
Sbjct: 69 RRTH 72
Score = 50.1 bits (120), Expect = 7e-09
Identities = 18/70 (25%), Positives = 27/70 (38%), Gaps = 5/70 (7%)
Query: 16 SLREHIMIHTGERPHVCHV--CSKSFRNRGKLNVHYKRVHERIRTHQCNH--CGRAFSDK 71
+ + R H+C C K++ L H R H + C+ C R F+
Sbjct: 4 GSSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAH-TRTHTGEKPFSCSWKGCERRFARS 62
Query: 72 SNLTVHIRTH 81
L+ H RTH
Sbjct: 63 DELSRHRRTH 72
Score = 41.6 bits (98), Expect = 8e-06
Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 5/70 (7%)
Query: 100 ATLYNHKFTHNDIK-FKCNY--CEKVYNNPSNLQRHIKTHTDNSLYIC--EICGKDFGTA 154
+ + + I+ C++ C K Y S+L+ H +THT + C + C + F +
Sbjct: 3 SGSSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARS 62
Query: 155 RYLKRHKDTH 164
L RH+ TH
Sbjct: 63 DELSRHRRTH 72
Score = 37.8 bits (88), Expect = 2e-04
Identities = 18/70 (25%), Positives = 27/70 (38%), Gaps = 4/70 (5%)
Query: 127 SNLQRHIKTHTDNSLYICEI--CGKDFGTARYLKRHKDTHNSVNTFVCEV--CNTGFKVK 182
S + +IC CGK + + +LK H TH F C C F
Sbjct: 3 SGSSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARS 62
Query: 183 KHLTQHYKSH 192
L++H ++H
Sbjct: 63 DELSRHRRTH 72
Score = 35.4 bits (82), Expect = 0.001
Identities = 18/57 (31%), Positives = 23/57 (40%), Gaps = 5/57 (8%)
Query: 1 MFKC--PQCGALLKNIWSLREHIMIHTGERPHVCHV--CSKSFRNRGKLNVHYKRVH 53
C P CG L+ H HTGE+P C C + F +L+ H R H
Sbjct: 17 SHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHR-RTH 72
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 49.5 bits (119), Expect = 7e-09
Identities = 11/42 (26%), Positives = 16/42 (38%), Gaps = 4/42 (9%)
Query: 53 HERIRT----HQCNHCGRAFSDKSNLTVHIRTHTDEKKYMCE 90
T ++C CG+ F + +L H HT EK
Sbjct: 3 SGSSGTGEKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGPS 44
Score = 37.1 bits (87), Expect = 2e-04
Identities = 14/42 (33%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Query: 77 HIRTHTDEKKYMCELCGAEFAQWATLYNHKFTHNDIK-FKCN 117
+ T EK Y CE CG F LY H H K +
Sbjct: 3 SGSSGTGEKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGPS 44
Score = 31.4 bits (72), Expect = 0.019
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 2 FKCPQCGALLKNIWSLREHIMIHTGERPHVC 32
+KC +CG L H M+HTGE+P
Sbjct: 13 YKCEECGKGFICRRDLYTHHMVHTGEKPSGP 43
Score = 29.4 bits (67), Expect = 0.098
Identities = 12/33 (36%), Positives = 13/33 (39%)
Query: 132 HIKTHTDNSLYICEICGKDFGTARYLKRHKDTH 164
+ T Y CE CGK F R L H H
Sbjct: 3 SGSSGTGEKPYKCEECGKGFICRRDLYTHHMVH 35
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 49.0 bits (118), Expect = 7e-09
Identities = 14/41 (34%), Positives = 18/41 (43%), Gaps = 4/41 (9%)
Query: 53 HERIRT----HQCNHCGRAFSDKSNLTVHIRTHTDEKKYMC 89
+CN C + F+ S+LTVH R HT EK
Sbjct: 3 SGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGP 43
Score = 34.8 bits (81), Expect = 0.001
Identities = 9/42 (21%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Query: 77 HIRTHTDEKKYMCELCGAEFAQWATLYNHKFTHNDIK-FKCN 117
+ +K + C C F Q ++L H+ H K +
Sbjct: 3 SGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGPS 44
Score = 30.9 bits (71), Expect = 0.031
Identities = 13/31 (41%), Positives = 15/31 (48%)
Query: 2 FKCPQCGALLKNIWSLREHIMIHTGERPHVC 32
FKC +C SL H IHTGE+P
Sbjct: 13 FKCNECKKTFTQSSSLTVHQRIHTGEKPSGP 43
Score = 26.7 bits (60), Expect = 0.91
Identities = 8/33 (24%), Positives = 12/33 (36%)
Query: 132 HIKTHTDNSLYICEICGKDFGTARYLKRHKDTH 164
+ L+ C C K F + L H+ H
Sbjct: 3 SGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIH 35
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 49.1 bits (118), Expect = 7e-09
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 59 HQCNHCGRAFSDKSNLTVHIRTHTDEKKYMC 89
+C CG+AF KS L +H RTH D+K
Sbjct: 13 CKCTECGKAFCWKSQLIMHQRTHVDDKHSGP 43
Score = 34.8 bits (81), Expect = 0.001
Identities = 13/42 (30%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 77 HIRTHTDEKKYMCELCGAEFAQWATLYNHKFTHNDIK-FKCN 117
+ T EK C CG F + L H+ TH D K +
Sbjct: 3 SGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGPS 44
Score = 29.8 bits (68), Expect = 0.078
Identities = 7/31 (22%), Positives = 10/31 (32%)
Query: 2 FKCPQCGALLKNIWSLREHIMIHTGERPHVC 32
KC +CG L H H ++
Sbjct: 13 CKCTECGKAFCWKSQLIMHQRTHVDDKHSGP 43
Score = 29.1 bits (66), Expect = 0.14
Identities = 10/34 (29%), Positives = 12/34 (35%)
Query: 131 RHIKTHTDNSLYICEICGKDFGTARYLKRHKDTH 164
+ T C CGK F L H+ TH
Sbjct: 2 SSGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTH 35
Score = 24.4 bits (54), Expect = 6.1
Identities = 7/34 (20%), Positives = 10/34 (29%)
Query: 159 RHKDTHNSVNTFVCEVCNTGFKVKKHLTQHYKSH 192
+ C C F K L H ++H
Sbjct: 2 SSGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTH 35
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 49.1 bits (118), Expect = 7e-09
Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
Query: 53 HERIRT----HQCNHCGRAFSDKSNLTVHIRTHTDEKKYMC 89
T ++C+ CG++F+ KS L +H + HT E+
Sbjct: 3 SGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGP 43
Score = 35.2 bits (82), Expect = 9e-04
Identities = 11/42 (26%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Query: 77 HIRTHTDEKKYMCELCGAEFAQWATLYNHKFTHNDIK-FKCN 117
+ T EK Y C CG F + L H+ H + +
Sbjct: 3 SGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGPS 44
Score = 32.5 bits (75), Expect = 0.007
Identities = 12/31 (38%), Positives = 13/31 (41%)
Query: 2 FKCPQCGALLKNIWSLREHIMIHTGERPHVC 32
+KC CG LR H HTGER
Sbjct: 13 YKCSDCGKSFTWKSRLRIHQKCHTGERHSGP 43
Score = 28.3 bits (64), Expect = 0.24
Identities = 10/33 (30%), Positives = 13/33 (39%)
Query: 132 HIKTHTDNSLYICEICGKDFGTARYLKRHKDTH 164
+ T Y C CGK F L+ H+ H
Sbjct: 3 SGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCH 35
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2ena_A 2en4_A
Length = 46
Score = 49.1 bits (118), Expect = 8e-09
Identities = 14/41 (34%), Positives = 18/41 (43%), Gaps = 4/41 (9%)
Query: 53 HERIRT----HQCNHCGRAFSDKSNLTVHIRTHTDEKKYMC 89
T +C CG+ FS +S L VH + HT EK
Sbjct: 3 SGSSGTGEKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGP 43
Score = 34.8 bits (81), Expect = 0.001
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 77 HIRTHTDEKKYMCELCGAEFAQWATLYNHKFTH 109
+ T EK + C CG F++ + L H H
Sbjct: 3 SGSSGTGEKPFKCVECGKGFSRRSALNVHHKLH 35
Score = 31.3 bits (72), Expect = 0.020
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 2 FKCPQCGALLKNIWSLREHIMIHTGERPHVC 32
FKC +CG +L H +HTGE+P
Sbjct: 13 FKCVECGKGFSRRSALNVHHKLHTGEKPSGP 43
Score = 27.5 bits (62), Expect = 0.55
Identities = 9/34 (26%), Positives = 11/34 (32%)
Query: 131 RHIKTHTDNSLYICEICGKDFGTARYLKRHKDTH 164
+ T + C CGK F L H H
Sbjct: 2 SSGSSGTGEKPFKCVECGKGFSRRSALNVHHKLH 35
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 49.0 bits (118), Expect = 8e-09
Identities = 10/41 (24%), Positives = 18/41 (43%), Gaps = 4/41 (9%)
Query: 53 HERIRT----HQCNHCGRAFSDKSNLTVHIRTHTDEKKYMC 89
+ ++C CG+ ++ + NL +H R H EK
Sbjct: 3 SGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGP 43
Score = 35.5 bits (83), Expect = 7e-04
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 77 HIRTHTDEKKYMCELCGAEFAQWATLYNHKFTH 109
+ + EK Y CE CG + + L H+ H
Sbjct: 3 SGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVH 35
Score = 30.9 bits (71), Expect = 0.032
Identities = 9/31 (29%), Positives = 13/31 (41%)
Query: 2 FKCPQCGALLKNIWSLREHIMIHTGERPHVC 32
+KC CG +L H +H GE+
Sbjct: 13 YKCEDCGKGYNRRLNLDMHQRVHMGEKTSGP 43
Score = 29.8 bits (68), Expect = 0.084
Identities = 9/33 (27%), Positives = 13/33 (39%)
Query: 132 HIKTHTDNSLYICEICGKDFGTARYLKRHKDTH 164
+ + Y CE CGK + L H+ H
Sbjct: 3 SGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVH 35
Score = 25.1 bits (56), Expect = 3.3
Identities = 7/33 (21%), Positives = 14/33 (42%)
Query: 160 HKDTHNSVNTFVCEVCNTGFKVKKHLTQHYKSH 192
+ + + CE C G+ + +L H + H
Sbjct: 3 SGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVH 35
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 49.1 bits (118), Expect = 8e-09
Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 4/42 (9%)
Query: 53 HERIRT----HQCNHCGRAFSDKSNLTVHIRTHTDEKKYMCE 90
T ++CN CG+AFS S L H R HT EK
Sbjct: 3 SGSSGTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGPS 44
Score = 35.6 bits (83), Expect = 6e-04
Identities = 13/42 (30%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 77 HIRTHTDEKKYMCELCGAEFAQWATLYNHKFTHNDIK-FKCN 117
+ T EK Y C CG F+Q + L H+ H K +
Sbjct: 3 SGSSGTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGPS 44
Score = 30.6 bits (70), Expect = 0.043
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 2 FKCPQCGALLKNIWSLREHIMIHTGERPHVC 32
+KC +CG L H IHTGE+P
Sbjct: 13 YKCNECGKAFSQTSKLARHQRIHTGEKPSGP 43
Score = 28.6 bits (65), Expect = 0.20
Identities = 11/34 (32%), Positives = 13/34 (38%)
Query: 131 RHIKTHTDNSLYICEICGKDFGTARYLKRHKDTH 164
+ T Y C CGK F L RH+ H
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFSQTSKLARHQRIH 35
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 49.1 bits (118), Expect = 8e-09
Identities = 12/41 (29%), Positives = 16/41 (39%), Gaps = 4/41 (9%)
Query: 53 HERIRT----HQCNHCGRAFSDKSNLTVHIRTHTDEKKYMC 89
T + C CG++FS L H R H+ EK
Sbjct: 3 SGSSGTGEKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGP 43
Score = 36.4 bits (85), Expect = 3e-04
Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 77 HIRTHTDEKKYMCELCGAEFAQWATLYNHKFTHNDIK-FKCN 117
+ T EK Y C+ CG F++ L H+ H+ K +
Sbjct: 3 SGSSGTGEKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGPS 44
Score = 29.8 bits (68), Expect = 0.072
Identities = 9/31 (29%), Positives = 15/31 (48%)
Query: 2 FKCPQCGALLKNIWSLREHIMIHTGERPHVC 32
+ C +CG L +H +H+GE+P
Sbjct: 13 YNCKECGKSFSRAPCLLKHERLHSGEKPSGP 43
Score = 28.6 bits (65), Expect = 0.19
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 132 HIKTHTDNSLYICEICGKDFGTARYLKRHKDTH 164
+ T LY C+ CGK F A L +H+ H
Sbjct: 3 SGSSGTGEKLYNCKECGKSFSRAPCLLKHERLH 35
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 49.0 bits (118), Expect = 8e-09
Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 4/42 (9%)
Query: 53 HERIRT----HQCNHCGRAFSDKSNLTVHIRTHTDEKKYMCE 90
T + CN CG++F KS+L H R HT EK
Sbjct: 3 SGSSGTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGPS 44
Score = 36.3 bits (85), Expect = 4e-04
Identities = 13/42 (30%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 77 HIRTHTDEKKYMCELCGAEFAQWATLYNHKFTHNDIK-FKCN 117
+ T EK Y+C CG F Q + L H+ H K +
Sbjct: 3 SGSSGTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGPS 44
Score = 30.2 bits (69), Expect = 0.059
Identities = 11/31 (35%), Positives = 14/31 (45%)
Query: 2 FKCPQCGALLKNIWSLREHIMIHTGERPHVC 32
+ C +CG L H IHTGE+P
Sbjct: 13 YICNECGKSFIQKSHLNRHRRIHTGEKPSGP 43
Score = 29.0 bits (66), Expect = 0.14
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 132 HIKTHTDNSLYICEICGKDFGTARYLKRHKDTH 164
+ T YIC CGK F +L RH+ H
Sbjct: 3 SGSSGTGEKPYICNECGKSFIQKSHLNRHRRIH 35
Score = 24.0 bits (53), Expect = 9.5
Identities = 8/33 (24%), Positives = 13/33 (39%)
Query: 160 HKDTHNSVNTFVCEVCNTGFKVKKHLTQHYKSH 192
+ ++C C F K HL +H + H
Sbjct: 3 SGSSGTGEKPYICNECGKSFIQKSHLNRHRRIH 35
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 48.7 bits (117), Expect = 1e-08
Identities = 18/71 (25%), Positives = 20/71 (28%), Gaps = 29/71 (40%)
Query: 20 HIMIHTGERPHVCHVCSKSFRNRGKLNVHYKRVHERIRTHQCNHCGRAFSDKSNLTVHIR 79
TGE+P C CG+AFSD L H R
Sbjct: 3 SGSSGTGEKP-----------------------------FDCIDCGKAFSDHIGLNQHRR 33
Query: 80 THTDEKKYMCE 90
HT EK
Sbjct: 34 IHTGEKPSGPS 44
Score = 35.6 bits (83), Expect = 7e-04
Identities = 10/33 (30%), Positives = 14/33 (42%)
Query: 77 HIRTHTDEKKYMCELCGAEFAQWATLYNHKFTH 109
+ T EK + C CG F+ L H+ H
Sbjct: 3 SGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIH 35
Score = 30.9 bits (71), Expect = 0.026
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 2 FKCPQCGALLKNIWSLREHIMIHTGERPHVC 32
F C CG + L +H IHTGE+P
Sbjct: 13 FDCIDCGKAFSDHIGLNQHRRIHTGEKPSGP 43
Score = 27.9 bits (63), Expect = 0.39
Identities = 9/33 (27%), Positives = 13/33 (39%)
Query: 132 HIKTHTDNSLYICEICGKDFGTARYLKRHKDTH 164
+ T + C CGK F L +H+ H
Sbjct: 3 SGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIH 35
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 48.7 bits (117), Expect = 1e-08
Identities = 13/43 (30%), Positives = 18/43 (41%), Gaps = 4/43 (9%)
Query: 52 VHERIRT----HQCNHCGRAFSDKSNLTVHIRTHTDEKKYMCE 90
T ++CN CG+ F+ S+L H HT EK
Sbjct: 2 SSGSSGTGKKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPS 44
Score = 35.9 bits (84), Expect = 4e-04
Identities = 12/43 (27%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Query: 76 VHIRTHTDEKKYMCELCGAEFAQWATLYNHKFTHNDIK-FKCN 117
+ T +K Y C CG F Q + L H+ H K +
Sbjct: 2 SSGSSGTGKKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPS 44
Score = 29.8 bits (68), Expect = 0.078
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 2 FKCPQCGALLKNIWSLREHIMIHTGERPHVC 32
+KC +CG + L H IHTGE+P
Sbjct: 13 YKCNECGKVFTQNSHLARHRGIHTGEKPSGP 43
Score = 27.9 bits (63), Expect = 0.38
Identities = 11/33 (33%), Positives = 14/33 (42%)
Query: 132 HIKTHTDNSLYICEICGKDFGTARYLKRHKDTH 164
+ T Y C CGK F +L RH+ H
Sbjct: 3 SGSSGTGKKPYKCNECGKVFTQNSHLARHRGIH 35
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 48.7 bits (117), Expect = 1e-08
Identities = 10/41 (24%), Positives = 17/41 (41%), Gaps = 4/41 (9%)
Query: 53 HERIRT----HQCNHCGRAFSDKSNLTVHIRTHTDEKKYMC 89
+ ++C CG+ + + +L H R HT EK
Sbjct: 3 SGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGP 43
Score = 34.4 bits (80), Expect = 0.002
Identities = 9/33 (27%), Positives = 14/33 (42%)
Query: 77 HIRTHTDEKKYMCELCGAEFAQWATLYNHKFTH 109
+ + EK Y C CG + + L H+ H
Sbjct: 3 SGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVH 35
Score = 31.3 bits (72), Expect = 0.022
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 2 FKCPQCGALLKNIWSLREHIMIHTGERPHVC 32
+KC +CG K L H +HTGE+
Sbjct: 13 YKCVECGKGYKRRLDLDFHQRVHTGEKLSGP 43
Score = 27.1 bits (61), Expect = 0.69
Identities = 8/33 (24%), Positives = 12/33 (36%)
Query: 132 HIKTHTDNSLYICEICGKDFGTARYLKRHKDTH 164
+ + Y C CGK + L H+ H
Sbjct: 3 SGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVH 35
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Length = 42
Score = 48.7 bits (117), Expect = 1e-08
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 59 HQCNHCGRAFSDKSNLTVHIRTHTDEKKYMC 89
++C+ CG+AF+ K L H RTH E
Sbjct: 11 YECSECGKAFNRKDQLISHQRTHAGESGPSS 41
Score = 32.5 bits (75), Expect = 0.007
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 79 RTHTDEKKYMCELCGAEFAQWATLYNHKFTH 109
+ E Y C CG F + L +H+ TH
Sbjct: 3 SGSSGENPYECSECGKAFNRKDQLISHQRTH 33
Score = 30.2 bits (69), Expect = 0.047
Identities = 8/31 (25%), Positives = 11/31 (35%)
Query: 2 FKCPQCGALLKNIWSLREHIMIHTGERPHVC 32
++C +CG L H H GE
Sbjct: 11 YECSECGKAFNRKDQLISHQRTHAGESGPSS 41
Score = 27.9 bits (63), Expect = 0.34
Identities = 10/31 (32%), Positives = 13/31 (41%)
Query: 134 KTHTDNSLYICEICGKDFGTARYLKRHKDTH 164
+ + Y C CGK F L H+ TH
Sbjct: 3 SGSSGENPYECSECGKAFNRKDQLISHQRTH 33
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 48.7 bits (117), Expect = 1e-08
Identities = 14/42 (33%), Positives = 18/42 (42%), Gaps = 4/42 (9%)
Query: 53 HERIRT----HQCNHCGRAFSDKSNLTVHIRTHTDEKKYMCE 90
T ++CN CG+ F S L+ H R HT EK
Sbjct: 3 SGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGPS 44
Score = 35.6 bits (83), Expect = 6e-04
Identities = 12/42 (28%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Query: 77 HIRTHTDEKKYMCELCGAEFAQWATLYNHKFTHNDIK-FKCN 117
+ T EK Y C CG F + L H+ H K +
Sbjct: 3 SGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGPS 44
Score = 30.6 bits (70), Expect = 0.036
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 2 FKCPQCGALLKNIWSLREHIMIHTGERPHVCH 33
+KC +CG + ++ L H IHTGE+P
Sbjct: 13 YKCNECGKVFRHNSYLSRHQRIHTGEKPSGPS 44
Score = 29.4 bits (67), Expect = 0.096
Identities = 12/34 (35%), Positives = 14/34 (41%)
Query: 131 RHIKTHTDNSLYICEICGKDFGTARYLKRHKDTH 164
+ T Y C CGK F YL RH+ H
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIH 35
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 48.6 bits (117), Expect = 1e-08
Identities = 12/42 (28%), Positives = 17/42 (40%), Gaps = 4/42 (9%)
Query: 53 HERIRT----HQCNHCGRAFSDKSNLTVHIRTHTDEKKYMCE 90
+ +C CG+AF +L H+R HT EK
Sbjct: 3 SGSSGSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGPS 44
Score = 34.0 bits (79), Expect = 0.002
Identities = 11/42 (26%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 77 HIRTHTDEKKYMCELCGAEFAQWATLYNHKFTHNDIK-FKCN 117
+ + EK + C+ CG F Q L +H H K +
Sbjct: 3 SGSSGSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGPS 44
Score = 31.7 bits (73), Expect = 0.016
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 2 FKCPQCGALLKNIWSLREHIMIHTGERPHVCH 33
FKC +CG + L H+ IHTGE+P
Sbjct: 13 FKCKECGKAFRQNIHLASHLRIHTGEKPSGPS 44
Score = 27.1 bits (61), Expect = 0.63
Identities = 8/34 (23%), Positives = 13/34 (38%)
Query: 131 RHIKTHTDNSLYICEICGKDFGTARYLKRHKDTH 164
+ + + C+ CGK F +L H H
Sbjct: 2 SSGSSGSGEKPFKCKECGKAFRQNIHLASHLRIH 35
Score = 24.4 bits (54), Expect = 5.7
Identities = 8/34 (23%), Positives = 13/34 (38%)
Query: 159 RHKDTHNSVNTFVCEVCNTGFKVKKHLTQHYKSH 192
+ + F C+ C F+ HL H + H
Sbjct: 2 SSGSSGSGEKPFKCKECGKAFRQNIHLASHLRIH 35
>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A
Length = 46
Score = 48.3 bits (116), Expect = 1e-08
Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 4/42 (9%)
Query: 53 HERIRT----HQCNHCGRAFSDKSNLTVHIRTHTDEKKYMCE 90
T ++CN CG+ FS S L+ H + HT EK
Sbjct: 3 SGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGPS 44
Score = 35.6 bits (83), Expect = 7e-04
Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 77 HIRTHTDEKKYMCELCGAEFAQWATLYNHKFTHNDIK-FKCN 117
+ T EK+Y C CG F++ + L H+ H K +
Sbjct: 3 SGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGPS 44
Score = 30.6 bits (70), Expect = 0.040
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 2 FKCPQCGALLKNIWSLREHIMIHTGERPHVCH 33
+KC +CG + L +H IHTGE+P
Sbjct: 13 YKCNECGKVFSRNSQLSQHQKIHTGEKPSGPS 44
Score = 29.0 bits (66), Expect = 0.15
Identities = 10/34 (29%), Positives = 13/34 (38%)
Query: 131 RHIKTHTDNSLYICEICGKDFGTARYLKRHKDTH 164
+ T Y C CGK F L +H+ H
Sbjct: 2 SSGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIH 35
Score = 24.8 bits (55), Expect = 4.5
Identities = 8/34 (23%), Positives = 11/34 (32%)
Query: 159 RHKDTHNSVNTFVCEVCNTGFKVKKHLTQHYKSH 192
+ + C C F L+QH K H
Sbjct: 2 SSGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIH 35
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 48.3 bits (116), Expect = 1e-08
Identities = 13/42 (30%), Positives = 18/42 (42%), Gaps = 4/42 (9%)
Query: 52 VHERIRT----HQCNHCGRAFSDKSNLTVHIRTHTDEKKYMC 89
++C+ CG+ FS S+L H R HT EK
Sbjct: 2 SSGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGP 43
Score = 39.4 bits (93), Expect = 3e-05
Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 76 VHIRTHTDEKKYMCELCGAEFAQWATLYNHKFTHNDIK-FKCN 117
+ EK Y C++CG EF+Q + L H+ H K +
Sbjct: 2 SSGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGPS 44
Score = 30.2 bits (69), Expect = 0.053
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 2 FKCPQCGALLKNIWSLREHIMIHTGERPHVC 32
+KC CG L+ H +HTGE+P
Sbjct: 13 YKCDVCGKEFSQSSHLQTHQRVHTGEKPSGP 43
Score = 29.0 bits (66), Expect = 0.14
Identities = 9/33 (27%), Positives = 17/33 (51%)
Query: 132 HIKTHTDNSLYICEICGKDFGTARYLKRHKDTH 164
+ Y C++CGK+F + +L+ H+ H
Sbjct: 3 SGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVH 35
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2ysv_A
Length = 46
Score = 48.3 bits (116), Expect = 2e-08
Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 4/41 (9%)
Query: 53 HERIRT----HQCNHCGRAFSDKSNLTVHIRTHTDEKKYMC 89
T ++C CG+AFS ++L H R HT EK
Sbjct: 3 SGSSGTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGP 43
Score = 33.6 bits (78), Expect = 0.003
Identities = 13/42 (30%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 77 HIRTHTDEKKYMCELCGAEFAQWATLYNHKFTHNDIK-FKCN 117
+ T EK Y C+ CG F+Q L H+ H K +
Sbjct: 3 SGSSGTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGPS 44
Score = 29.8 bits (68), Expect = 0.065
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 2 FKCPQCGALLKNIWSLREHIMIHTGERPHVC 32
++C +CG L +H +HTGE+P
Sbjct: 13 YECKECGKAFSQTTHLIQHQRVHTGEKPSGP 43
Score = 27.1 bits (61), Expect = 0.61
Identities = 10/34 (29%), Positives = 15/34 (44%)
Query: 131 RHIKTHTDNSLYICEICGKDFGTARYLKRHKDTH 164
+ T Y C+ CGK F +L +H+ H
Sbjct: 2 SSGSSGTGEKPYECKECGKAFSQTTHLIQHQRVH 35
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 48.3 bits (116), Expect = 2e-08
Identities = 13/42 (30%), Positives = 18/42 (42%), Gaps = 4/42 (9%)
Query: 53 HERIRT----HQCNHCGRAFSDKSNLTVHIRTHTDEKKYMCE 90
T ++CN CG+ F+ S+L H R HT K
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGPS 44
Score = 34.4 bits (80), Expect = 0.001
Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 77 HIRTHTDEKKYMCELCGAEFAQWATLYNHKFTHNDIK-FKCN 117
+ T EK Y C CG F Q + L NH+ H +K +
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGPS 44
Score = 30.2 bits (69), Expect = 0.059
Identities = 11/32 (34%), Positives = 15/32 (46%)
Query: 2 FKCPQCGALLKNIWSLREHIMIHTGERPHVCH 33
+KC +CG + L H IHTG +P
Sbjct: 13 YKCNECGKVFTQNSHLANHQRIHTGVKPSGPS 44
Score = 28.3 bits (64), Expect = 0.29
Identities = 10/34 (29%), Positives = 13/34 (38%)
Query: 131 RHIKTHTDNSLYICEICGKDFGTARYLKRHKDTH 164
+ T Y C CGK F +L H+ H
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLANHQRIH 35
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid
binding, KIAA1227 protein, structural genomics; NMR
{Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 107
Score = 49.5 bits (117), Expect = 2e-08
Identities = 17/90 (18%), Positives = 27/90 (30%), Gaps = 3/90 (3%)
Query: 57 RTHQCNHCGRAFSDKSNLTVHIRTHTDEKKYMCELCGAEFAQWATLYNHKFTHNDIKFKC 116
+QC C S H R +C C F H+ K C
Sbjct: 15 EVYQCRLCNAKLSSLLEQGSHERLC--RNAAVCPYCSLRFFSPELKQEHESKCEYKKLTC 72
Query: 117 NYCEKVYNNPSNLQRHIKT-HTDNSLYICE 145
C + + + ++ RH H N++
Sbjct: 73 LECMRTFKSSFSIWRHQVEVHNQNNMAPTS 102
Score = 46.4 bits (109), Expect = 4e-07
Identities = 13/87 (14%), Positives = 25/87 (28%), Gaps = 3/87 (3%)
Query: 105 HKFTHNDIKFKCNYCEKVYNNPSNLQRHIKTHTDNSLYICEICGKDFGTARYLKRHKDTH 164
N ++C C ++ H + + +C C F + + H+
Sbjct: 8 ASPVENKEVYQCRLCNAKLSSLLEQGSHERLC--RNAAVCPYCSLRFFSPELKQEHESKC 65
Query: 165 NSVNTFVCEVCNTGFKVKKHLTQHYKS 191
C C FK + +H
Sbjct: 66 E-YKKLTCLECMRTFKSSFSIWRHQVE 91
Score = 44.5 bits (104), Expect = 2e-06
Identities = 21/97 (21%), Positives = 41/97 (42%), Gaps = 3/97 (3%)
Query: 83 DEKKYMCELCGAEFAQWATLYNHKFTHNDIKFKCNYCEKVYNNPSNLQRHIKTHTDNSLY 142
+++ Y C LC A+ + +H+ + C YC + +P Q H ++ +
Sbjct: 13 NKEVYQCRLCNAKLSSLLEQGSHERLCRN-AAVCPYCSLRFFSPELKQEH-ESKCEYKKL 70
Query: 143 ICEICGKDFGTARYLKRHKDT-HNSVNTFVCEVCNTG 178
C C + F ++ + RH+ HN N ++G
Sbjct: 71 TCLECMRTFKSSFSIWRHQVEVHNQNNMAPTSGPSSG 107
Score = 41.0 bits (95), Expect = 3e-05
Identities = 13/83 (15%), Positives = 27/83 (32%), Gaps = 4/83 (4%)
Query: 26 GERPHVCHVCSKSFRNRGKLNVHYKRVHERIRTHQCNHCGRAFSDKSNLTVHIRTHTDEK 85
+ + C +C+ + + H + C +C F H + + K
Sbjct: 13 NKEVYQCRLCNAKLSSLLEQGSHERLCRNAA---VCPYCSLRFFSPELKQEH-ESKCEYK 68
Query: 86 KYMCELCGAEFAQWATLYNHKFT 108
K C C F +++ H+
Sbjct: 69 KLTCLECMRTFKSSFSIWRHQVE 91
Score = 31.4 bits (70), Expect = 0.068
Identities = 11/52 (21%), Positives = 19/52 (36%), Gaps = 1/52 (1%)
Query: 2 FKCPQCGALLKNIWSLREHIMIHTGERPHVCHVCSKSFRNRGKLNVHYKRVH 53
CP C + +EH + C C ++F++ + H VH
Sbjct: 43 AVCPYCSLRFFSPELKQEH-ESKCEYKKLTCLECMRTFKSSFSIWRHQVEVH 93
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.9 bits (115), Expect = 2e-08
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 4/41 (9%)
Query: 53 HERIRT----HQCNHCGRAFSDKSNLTVHIRTHTDEKKYMC 89
+ ++CN CG+ F+ S+LT H R HT EK
Sbjct: 3 SGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGP 43
Score = 35.2 bits (82), Expect = 0.001
Identities = 13/42 (30%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 77 HIRTHTDEKKYMCELCGAEFAQWATLYNHKFTHNDIK-FKCN 117
+ + EK Y C CG F Q + L NH H K +
Sbjct: 3 SGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGPS 44
Score = 29.8 bits (68), Expect = 0.081
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 2 FKCPQCGALLKNIWSLREHIMIHTGERPHVC 32
+KC +CG + L H IHTGE+P
Sbjct: 13 YKCNECGKVFTQNSHLTNHWRIHTGEKPSGP 43
Score = 29.0 bits (66), Expect = 0.14
Identities = 9/34 (26%), Positives = 12/34 (35%)
Query: 131 RHIKTHTDNSLYICEICGKDFGTARYLKRHKDTH 164
+ + Y C CGK F +L H H
Sbjct: 2 SSGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIH 35
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.9 bits (115), Expect = 2e-08
Identities = 13/42 (30%), Positives = 18/42 (42%), Gaps = 4/42 (9%)
Query: 53 HERIRT----HQCNHCGRAFSDKSNLTVHIRTHTDEKKYMCE 90
T ++CN CG+ F+ S+L H HT EK
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGPS 44
Score = 34.4 bits (80), Expect = 0.002
Identities = 13/42 (30%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 77 HIRTHTDEKKYMCELCGAEFAQWATLYNHKFTHNDIK-FKCN 117
+ T EK Y C CG F Q + L H+ H K +
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGPS 44
Score = 29.8 bits (68), Expect = 0.072
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 2 FKCPQCGALLKNIWSLREHIMIHTGERPHVC 32
+KC +CG + L H IHTGE+P
Sbjct: 13 YKCNECGKVFTQNSHLVRHRGIHTGEKPSGP 43
Score = 28.6 bits (65), Expect = 0.19
Identities = 11/34 (32%), Positives = 14/34 (41%)
Query: 131 RHIKTHTDNSLYICEICGKDFGTARYLKRHKDTH 164
+ T Y C CGK F +L RH+ H
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIH 35
Score = 24.4 bits (54), Expect = 7.1
Identities = 7/34 (20%), Positives = 10/34 (29%)
Query: 159 RHKDTHNSVNTFVCEVCNTGFKVKKHLTQHYKSH 192
+ + C C F HL +H H
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIH 35
>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 47.9 bits (115), Expect = 2e-08
Identities = 11/41 (26%), Positives = 17/41 (41%), Gaps = 4/41 (9%)
Query: 53 HERIRT----HQCNHCGRAFSDKSNLTVHIRTHTDEKKYMC 89
T ++C CG+ FS K L H +TH+ +
Sbjct: 3 SGSSGTGENPYECCECGKVFSRKDQLVSHQKTHSGQSGPSS 43
Score = 32.9 bits (76), Expect = 0.005
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 77 HIRTHTDEKKYMCELCGAEFAQWATLYNHKFTH 109
+ T E Y C CG F++ L +H+ TH
Sbjct: 3 SGSSGTGENPYECCECGKVFSRKDQLVSHQKTH 35
Score = 28.2 bits (64), Expect = 0.28
Identities = 11/33 (33%), Positives = 14/33 (42%)
Query: 132 HIKTHTDNSLYICEICGKDFGTARYLKRHKDTH 164
+ T + Y C CGK F L H+ TH
Sbjct: 3 SGSSGTGENPYECCECGKVFSRKDQLVSHQKTH 35
Score = 27.5 bits (62), Expect = 0.41
Identities = 7/31 (22%), Positives = 13/31 (41%)
Query: 2 FKCPQCGALLKNIWSLREHIMIHTGERPHVC 32
++C +CG + L H H+G+
Sbjct: 13 YECCECGKVFSRKDQLVSHQKTHSGQSGPSS 43
>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.9 bits (115), Expect = 2e-08
Identities = 13/42 (30%), Positives = 18/42 (42%), Gaps = 4/42 (9%)
Query: 53 HERIRT----HQCNHCGRAFSDKSNLTVHIRTHTDEKKYMCE 90
T + CN CG+AF ++L H+R HT E
Sbjct: 3 SGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGPS 44
Score = 34.4 bits (80), Expect = 0.002
Identities = 12/33 (36%), Positives = 14/33 (42%)
Query: 77 HIRTHTDEKKYMCELCGAEFAQWATLYNHKFTH 109
+ T EK Y C +CG F A L H H
Sbjct: 3 SGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVH 35
Score = 30.6 bits (70), Expect = 0.044
Identities = 8/31 (25%), Positives = 12/31 (38%)
Query: 2 FKCPQCGALLKNIWSLREHIMIHTGERPHVC 32
+ C CG L +H+ +HT E
Sbjct: 13 YSCNVCGKAFVLSAHLNQHLRVHTQETLSGP 43
Score = 28.2 bits (64), Expect = 0.22
Identities = 10/34 (29%), Positives = 15/34 (44%)
Query: 131 RHIKTHTDNSLYICEICGKDFGTARYLKRHKDTH 164
+ T Y C +CGK F + +L +H H
Sbjct: 2 SSGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVH 35
Score = 24.0 bits (53), Expect = 9.1
Identities = 9/34 (26%), Positives = 13/34 (38%)
Query: 159 RHKDTHNSVNTFVCEVCNTGFKVKKHLTQHYKSH 192
+ + C VC F + HL QH + H
Sbjct: 2 SSGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVH 35
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 47.5 bits (114), Expect = 3e-08
Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 4/41 (9%)
Query: 53 HERIRT----HQCNHCGRAFSDKSNLTVHIRTHTDEKKYMC 89
T +C CG++++ + +LT H R HT EK
Sbjct: 3 SGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGP 43
Score = 34.8 bits (81), Expect = 0.001
Identities = 11/42 (26%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Query: 77 HIRTHTDEKKYMCELCGAEFAQWATLYNHKFTHNDIK-FKCN 117
+ T EK + C CG + Q L H+ H K +
Sbjct: 3 SGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGPS 44
Score = 29.8 bits (68), Expect = 0.068
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 2 FKCPQCGALLKNIWSLREHIMIHTGERPHVC 32
FKC +CG L +H +HTGE+P
Sbjct: 13 FKCGECGKSYNQRVHLTQHQRVHTGEKPSGP 43
Score = 27.5 bits (62), Expect = 0.45
Identities = 8/34 (23%), Positives = 14/34 (41%)
Query: 131 RHIKTHTDNSLYICEICGKDFGTARYLKRHKDTH 164
+ T + C CGK + +L +H+ H
Sbjct: 2 SSGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVH 35
Score = 24.8 bits (55), Expect = 4.6
Identities = 9/34 (26%), Positives = 13/34 (38%)
Query: 159 RHKDTHNSVNTFVCEVCNTGFKVKKHLTQHYKSH 192
+ F C C + + HLTQH + H
Sbjct: 2 SSGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVH 35
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.5 bits (114), Expect = 3e-08
Identities = 19/71 (26%), Positives = 22/71 (30%), Gaps = 29/71 (40%)
Query: 20 HIMIHTGERPHVCHVCSKSFRNRGKLNVHYKRVHERIRTHQCNHCGRAFSDKSNLTVHIR 79
TG +P +QCN CG+AFS S L H R
Sbjct: 3 SGSSGTGGKP-----------------------------YQCNECGKAFSQTSKLARHQR 33
Query: 80 THTDEKKYMCE 90
HT EK
Sbjct: 34 VHTGEKPSGPS 44
Score = 35.6 bits (83), Expect = 6e-04
Identities = 12/42 (28%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 77 HIRTHTDEKKYMCELCGAEFAQWATLYNHKFTHNDIK-FKCN 117
+ T K Y C CG F+Q + L H+ H K +
Sbjct: 3 SGSSGTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGPS 44
Score = 29.8 bits (68), Expect = 0.067
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 2 FKCPQCGALLKNIWSLREHIMIHTGERPHVC 32
++C +CG L H +HTGE+P
Sbjct: 13 YQCNECGKAFSQTSKLARHQRVHTGEKPSGP 43
Score = 26.7 bits (60), Expect = 0.80
Identities = 11/33 (33%), Positives = 13/33 (39%)
Query: 132 HIKTHTDNSLYICEICGKDFGTARYLKRHKDTH 164
+ T Y C CGK F L RH+ H
Sbjct: 3 SGSSGTGGKPYQCNECGKAFSQTSKLARHQRVH 35
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.5 bits (114), Expect = 3e-08
Identities = 13/42 (30%), Positives = 18/42 (42%), Gaps = 4/42 (9%)
Query: 53 HERIRT----HQCNHCGRAFSDKSNLTVHIRTHTDEKKYMCE 90
T ++CN CG+ F+ S+L H HT EK
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPS 44
Score = 34.4 bits (80), Expect = 0.001
Identities = 13/42 (30%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 77 HIRTHTDEKKYMCELCGAEFAQWATLYNHKFTHNDIK-FKCN 117
+ T EK Y C CG F Q + L H+ H K +
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPS 44
Score = 29.4 bits (67), Expect = 0.11
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 2 FKCPQCGALLKNIWSLREHIMIHTGERPHVC 32
+KC +CG + L H IHTGE+P
Sbjct: 13 YKCNECGKVFTQNSHLARHRGIHTGEKPSGP 43
Score = 27.1 bits (61), Expect = 0.58
Identities = 11/33 (33%), Positives = 14/33 (42%)
Query: 132 HIKTHTDNSLYICEICGKDFGTARYLKRHKDTH 164
+ T Y C CGK F +L RH+ H
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRGIH 35
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.5 bits (114), Expect = 3e-08
Identities = 12/42 (28%), Positives = 17/42 (40%), Gaps = 4/42 (9%)
Query: 53 HERIRT----HQCNHCGRAFSDKSNLTVHIRTHTDEKKYMCE 90
T ++C+ CG+ F S+L H HT EK
Sbjct: 3 SGSSGTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGPS 44
Score = 34.0 bits (79), Expect = 0.002
Identities = 12/42 (28%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 77 HIRTHTDEKKYMCELCGAEFAQWATLYNHKFTHNDIK-FKCN 117
+ T EK Y C CG F + + L H+ H K +
Sbjct: 3 SGSSGTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGPS 44
Score = 30.5 bits (70), Expect = 0.036
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 2 FKCPQCGALLKNIWSLREHIMIHTGERPHVCH 33
+KC +CG + + L H +IHTGE+P
Sbjct: 13 YKCHECGKVFRRNSHLARHQLIHTGEKPSGPS 44
Score = 27.8 bits (63), Expect = 0.38
Identities = 11/34 (32%), Positives = 14/34 (41%)
Query: 131 RHIKTHTDNSLYICEICGKDFGTARYLKRHKDTH 164
+ T Y C CGK F +L RH+ H
Sbjct: 2 SSGSSGTGEKPYKCHECGKVFRRNSHLARHQLIH 35
Score = 25.1 bits (56), Expect = 3.2
Identities = 7/34 (20%), Positives = 11/34 (32%)
Query: 159 RHKDTHNSVNTFVCEVCNTGFKVKKHLTQHYKSH 192
+ + C C F+ HL +H H
Sbjct: 2 SSGSSGTGEKPYKCHECGKVFRRNSHLARHQLIH 35
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET:
ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB:
3znf_A 4znf_A
Length = 57
Score = 47.8 bits (113), Expect = 3e-08
Identities = 18/51 (35%), Positives = 21/51 (41%)
Query: 59 HQCNHCGRAFSDKSNLTVHIRTHTDEKKYMCELCGAEFAQWATLYNHKFTH 109
+ C CG S L HIRTHTD + Y C C F L H +
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSK 52
Score = 47.4 bits (112), Expect = 4e-08
Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Query: 30 HVCHVCSKSFRNRGKLNVHYKRVHERIRTHQCNHCGRAFSDKSNLTVHIRTHTDEKK 86
++C C + L H R H +R + C +C +F K NLT H+++ KK
Sbjct: 2 YICEECGIRXKKPSMLKKH-IRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSKK 57
Score = 42.4 bits (99), Expect = 3e-06
Identities = 19/52 (36%), Positives = 25/52 (48%)
Query: 113 KFKCNYCEKVYNNPSNLQRHIKTHTDNSLYICEICGKDFGTARYLKRHKDTH 164
K+ C C PS L++HI+THTD Y C C F T L +H +
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSK 52
Score = 42.0 bits (98), Expect = 5e-06
Identities = 23/52 (44%), Positives = 28/52 (53%)
Query: 142 YICEICGKDFGTARYLKRHKDTHNSVNTFVCEVCNTGFKVKKHLTQHYKSHS 193
YICE CG LK+H TH V + C CN FK K +LT+H KS +
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKA 53
Score = 40.5 bits (94), Expect = 1e-05
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 86 KYMCELCGAEFAQWATLYNHKFTHNDIK-FKCNYCEKVYNNPSNLQRHIKTHT 137
KY+CE CG + + L H TH D++ + C YC + NL +H+K+
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKA 53
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.1 bits (113), Expect = 4e-08
Identities = 13/42 (30%), Positives = 18/42 (42%), Gaps = 4/42 (9%)
Query: 53 HERIRT----HQCNHCGRAFSDKSNLTVHIRTHTDEKKYMCE 90
T ++CN CG+ F+ S+L H R HT K
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGPS 44
Score = 35.2 bits (82), Expect = 0.001
Identities = 13/42 (30%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 77 HIRTHTDEKKYMCELCGAEFAQWATLYNHKFTHNDIK-FKCN 117
+ T EK Y C CG F Q + L H+ H K +
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGPS 44
Score = 29.4 bits (67), Expect = 0.092
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 2 FKCPQCGALLKNIWSLREHIMIHTGERPHVC 32
+KC +CG + L H +HTG +P
Sbjct: 13 YKCNECGKVFTQNSHLARHRRVHTGGKPSGP 43
Score = 27.5 bits (62), Expect = 0.55
Identities = 11/33 (33%), Positives = 14/33 (42%)
Query: 132 HIKTHTDNSLYICEICGKDFGTARYLKRHKDTH 164
+ T Y C CGK F +L RH+ H
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRRVH 35
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.1 bits (113), Expect = 4e-08
Identities = 15/70 (21%), Positives = 22/70 (31%), Gaps = 29/70 (41%)
Query: 20 HIMIHTGERPHVCHVCSKSFRNRGKLNVHYKRVHERIRTHQCNHCGRAFSDKSNLTVHIR 79
+GE+P + C++CG+AF + L H R
Sbjct: 3 SGSSGSGEKP-----------------------------YVCDYCGKAFGLSAELVRHQR 33
Query: 80 THTDEKKYMC 89
HT EK
Sbjct: 34 IHTGEKPSGP 43
Score = 35.2 bits (82), Expect = 8e-04
Identities = 12/42 (28%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 77 HIRTHTDEKKYMCELCGAEFAQWATLYNHKFTHNDIK-FKCN 117
+ + EK Y+C+ CG F A L H+ H K +
Sbjct: 3 SGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGPS 44
Score = 30.9 bits (71), Expect = 0.030
Identities = 11/31 (35%), Positives = 13/31 (41%)
Query: 2 FKCPQCGALLKNIWSLREHIMIHTGERPHVC 32
+ C CG L H IHTGE+P
Sbjct: 13 YVCDYCGKAFGLSAELVRHQRIHTGEKPSGP 43
Score = 29.8 bits (68), Expect = 0.079
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 131 RHIKTHTDNSLYICEICGKDFGTARYLKRHKDTH 164
+ + Y+C+ CGK FG + L RH+ H
Sbjct: 2 SSGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIH 35
Score = 25.2 bits (56), Expect = 3.6
Identities = 7/34 (20%), Positives = 14/34 (41%)
Query: 159 RHKDTHNSVNTFVCEVCNTGFKVKKHLTQHYKSH 192
+ + +VC+ C F + L +H + H
Sbjct: 2 SSGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIH 35
>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.1 bits (113), Expect = 4e-08
Identities = 12/41 (29%), Positives = 16/41 (39%), Gaps = 4/41 (9%)
Query: 53 HERIRT----HQCNHCGRAFSDKSNLTVHIRTHTDEKKYMC 89
+ +C CG+ F+ S L H R HT EK
Sbjct: 3 SGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGP 43
Score = 35.6 bits (83), Expect = 6e-04
Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 77 HIRTHTDEKKYMCELCGAEFAQWATLYNHKFTHNDIK-FKCN 117
+ + EK + CE CG F Q + L++H+ H K +
Sbjct: 3 SGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGPS 44
Score = 30.6 bits (70), Expect = 0.036
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 2 FKCPQCGALLKNIWSLREHIMIHTGERPHVC 32
FKC +CG L H +HTGE+P
Sbjct: 13 FKCEECGKRFTQNSQLHSHQRVHTGEKPSGP 43
Score = 28.6 bits (65), Expect = 0.17
Identities = 9/34 (26%), Positives = 13/34 (38%)
Query: 131 RHIKTHTDNSLYICEICGKDFGTARYLKRHKDTH 164
+ + + CE CGK F L H+ H
Sbjct: 2 SSGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVH 35
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Length = 46
Score = 47.2 bits (113), Expect = 4e-08
Identities = 15/71 (21%), Positives = 20/71 (28%), Gaps = 29/71 (40%)
Query: 20 HIMIHTGERPHVCHVCSKSFRNRGKLNVHYKRVHERIRTHQCNHCGRAFSDKSNLTVHIR 79
TGE+P + C CG++F S L H R
Sbjct: 3 SGSSGTGEKP-----------------------------YNCKECGKSFRWASCLLKHQR 33
Query: 80 THTDEKKYMCE 90
H+ EK
Sbjct: 34 VHSGEKPSGPS 44
Score = 36.0 bits (84), Expect = 4e-04
Identities = 12/42 (28%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 77 HIRTHTDEKKYMCELCGAEFAQWATLYNHKFTHNDIK-FKCN 117
+ T EK Y C+ CG F + L H+ H+ K +
Sbjct: 3 SGSSGTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGPS 44
Score = 32.2 bits (74), Expect = 0.011
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 2 FKCPQCGALLKNIWSLREHIMIHTGERPHVC 32
+ C +CG + L +H +H+GE+P
Sbjct: 13 YNCKECGKSFRWASCLLKHQRVHSGEKPSGP 43
Score = 29.5 bits (67), Expect = 0.090
Identities = 11/34 (32%), Positives = 15/34 (44%)
Query: 131 RHIKTHTDNSLYICEICGKDFGTARYLKRHKDTH 164
+ T Y C+ CGK F A L +H+ H
Sbjct: 2 SSGSSGTGEKPYNCKECGKSFRWASCLLKHQRVH 35
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 47.1 bits (113), Expect = 5e-08
Identities = 14/40 (35%), Positives = 17/40 (42%)
Query: 50 KRVHERIRTHQCNHCGRAFSDKSNLTVHIRTHTDEKKYMC 89
R H+C+ CG+ F SN H R HT EK
Sbjct: 4 GSSGHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGP 43
Score = 34.4 bits (80), Expect = 0.002
Identities = 8/33 (24%), Positives = 13/33 (39%)
Query: 77 HIRTHTDEKKYMCELCGAEFAQWATLYNHKFTH 109
+ E+ + C CG F Q + H+ H
Sbjct: 3 SGSSGHGERGHRCSDCGKFFLQASNFIQHRRIH 35
Score = 31.7 bits (73), Expect = 0.017
Identities = 8/35 (22%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 104 NHKFTHNDIK-FKCNYCEKVYNNPSNLQRHIKTHT 137
+ + + + +C+ C K + SN +H + HT
Sbjct: 2 SSGSSGHGERGHRCSDCGKFFLQASNFIQHRRIHT 36
Score = 29.8 bits (68), Expect = 0.063
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 2 FKCPQCGALLKNIWSLREHIMIHTGERPHVC 32
+C CG + +H IHTGE+P
Sbjct: 13 HRCSDCGKFFLQASNFIQHRRIHTGEKPSGP 43
Score = 29.8 bits (68), Expect = 0.070
Identities = 8/34 (23%), Positives = 12/34 (35%)
Query: 131 RHIKTHTDNSLYICEICGKDFGTARYLKRHKDTH 164
+ + C CGK F A +H+ H
Sbjct: 2 SSGSSGHGERGHRCSDCGKFFLQASNFIQHRRIH 35
Score = 25.6 bits (57), Expect = 2.2
Identities = 6/34 (17%), Positives = 10/34 (29%)
Query: 159 RHKDTHNSVNTFVCEVCNTGFKVKKHLTQHYKSH 192
+ + C C F + QH + H
Sbjct: 2 SSGSSGHGERGHRCSDCGKFFLQASNFIQHRRIH 35
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 46.7 bits (112), Expect = 5e-08
Identities = 11/41 (26%), Positives = 17/41 (41%), Gaps = 4/41 (9%)
Query: 53 HERIRT----HQCNHCGRAFSDKSNLTVHIRTHTDEKKYMC 89
T ++C CG+AF S+L H H+ E+
Sbjct: 3 SGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGP 43
Score = 35.2 bits (82), Expect = 8e-04
Identities = 11/42 (26%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 77 HIRTHTDEKKYMCELCGAEFAQWATLYNHKFTHNDIK-FKCN 117
+ T EK Y C++CG F + L H H+ + +
Sbjct: 3 SGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGPS 44
Score = 31.7 bits (73), Expect = 0.017
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 2 FKCPQCGALLKNIWSLREHIMIHTGERPHVC 32
+KC CG + L +H +H+GERP
Sbjct: 13 YKCQVCGKAFRVSSHLVQHHSVHSGERPSGP 43
Score = 28.2 bits (64), Expect = 0.25
Identities = 10/34 (29%), Positives = 16/34 (47%)
Query: 131 RHIKTHTDNSLYICEICGKDFGTARYLKRHKDTH 164
+ T Y C++CGK F + +L +H H
Sbjct: 2 SSGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVH 35
Score = 25.6 bits (57), Expect = 2.6
Identities = 11/35 (31%), Positives = 16/35 (45%)
Query: 159 RHKDTHNSVNTFVCEVCNTGFKVKKHLTQHYKSHS 193
+ + C+VC F+V HL QH+ HS
Sbjct: 2 SSGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHS 36
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 46.7 bits (112), Expect = 5e-08
Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 4/42 (9%)
Query: 53 HERIRT----HQCNHCGRAFSDKSNLTVHIRTHTDEKKYMCE 90
T H+CN CG++F ++L H R HT EK
Sbjct: 3 SGSSGTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGPS 44
Score = 34.0 bits (79), Expect = 0.003
Identities = 12/42 (28%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 77 HIRTHTDEKKYMCELCGAEFAQWATLYNHKFTHNDIK-FKCN 117
+ T E+ + C CG F Q A L H+ H K +
Sbjct: 3 SGSSGTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGPS 44
Score = 30.2 bits (69), Expect = 0.059
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 2 FKCPQCGALLKNIWSLREHIMIHTGERPHVC 32
KC +CG L +H IHTGE+P
Sbjct: 13 HKCNECGKSFIQSAHLIQHQRIHTGEKPSGP 43
Score = 28.2 bits (64), Expect = 0.28
Identities = 9/34 (26%), Positives = 15/34 (44%)
Query: 131 RHIKTHTDNSLYICEICGKDFGTARYLKRHKDTH 164
+ T + C CGK F + +L +H+ H
Sbjct: 2 SSGSSGTGERPHKCNECGKSFIQSAHLIQHQRIH 35
>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 46.7 bits (112), Expect = 6e-08
Identities = 10/42 (23%), Positives = 18/42 (42%), Gaps = 4/42 (9%)
Query: 53 HERIRT----HQCNHCGRAFSDKSNLTVHIRTHTDEKKYMCE 90
+ ++C+ CG+AF ++L H R HT +
Sbjct: 3 SGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGPS 44
Score = 35.6 bits (83), Expect = 7e-04
Identities = 10/42 (23%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Query: 77 HIRTHTDEKKYMCELCGAEFAQWATLYNHKFTHNDIK-FKCN 117
+ + EK Y C CG F + L H+ H + +
Sbjct: 3 SGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGPS 44
Score = 31.3 bits (72), Expect = 0.018
Identities = 13/31 (41%), Positives = 15/31 (48%)
Query: 2 FKCPQCGALLKNIWSLREHIMIHTGERPHVC 32
+KC +CG L EH IHTG RP
Sbjct: 13 YKCSECGKAFHRHTHLNEHRRIHTGYRPSGP 43
Score = 28.6 bits (65), Expect = 0.21
Identities = 9/34 (26%), Positives = 13/34 (38%)
Query: 131 RHIKTHTDNSLYICEICGKDFGTARYLKRHKDTH 164
+ + Y C CGK F +L H+ H
Sbjct: 2 SSGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIH 35
Score = 25.1 bits (56), Expect = 3.4
Identities = 7/34 (20%), Positives = 12/34 (35%)
Query: 159 RHKDTHNSVNTFVCEVCNTGFKVKKHLTQHYKSH 192
+ + + C C F HL +H + H
Sbjct: 2 SSGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIH 35
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens}
Length = 46
Score = 46.4 bits (111), Expect = 7e-08
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 59 HQCNHCGRAFSDKSNLTVHIRTHTDEKKYMC 89
++C+ C ++FS K L VH R HT EK
Sbjct: 13 YKCSQCEKSFSGKLRLLVHQRMHTREKPSGP 43
Score = 32.9 bits (76), Expect = 0.005
Identities = 8/42 (19%), Positives = 12/42 (28%), Gaps = 1/42 (2%)
Query: 77 HIRTHTDEKKYMCELCGAEFAQWATLYNHKFTHNDIK-FKCN 117
+ Y C C F+ L H+ H K +
Sbjct: 3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGPS 44
Score = 31.4 bits (72), Expect = 0.018
Identities = 10/31 (32%), Positives = 13/31 (41%)
Query: 2 FKCPQCGALLKNIWSLREHIMIHTGERPHVC 32
+KC QC L H +HT E+P
Sbjct: 13 YKCSQCEKSFSGKLRLLVHQRMHTREKPSGP 43
Score = 27.9 bits (63), Expect = 0.36
Identities = 8/33 (24%), Positives = 11/33 (33%)
Query: 132 HIKTHTDNSLYICEICGKDFGTARYLKRHKDTH 164
+ + Y C C K F L H+ H
Sbjct: 3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMH 35
Score = 24.4 bits (54), Expect = 6.7
Identities = 9/33 (27%), Positives = 12/33 (36%)
Query: 160 HKDTHNSVNTFVCEVCNTGFKVKKHLTQHYKSH 192
+ VN + C C F K L H + H
Sbjct: 3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMH 35
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 46.4 bits (111), Expect = 8e-08
Identities = 17/70 (24%), Positives = 22/70 (31%), Gaps = 29/70 (41%)
Query: 20 HIMIHTGERPHVCHVCSKSFRNRGKLNVHYKRVHERIRTHQCNHCGRAFSDKSNLTVHIR 79
GE+P +QC+ CG++FS LT H
Sbjct: 3 SGSSGEGEKP-----------------------------YQCSECGKSFSGSYRLTQHWI 33
Query: 80 THTDEKKYMC 89
THT EK
Sbjct: 34 THTREKPSGP 43
Score = 34.4 bits (80), Expect = 0.002
Identities = 11/33 (33%), Positives = 13/33 (39%)
Query: 77 HIRTHTDEKKYMCELCGAEFAQWATLYNHKFTH 109
+ EK Y C CG F+ L H TH
Sbjct: 3 SGSSGEGEKPYQCSECGKSFSGSYRLTQHWITH 35
Score = 30.6 bits (70), Expect = 0.044
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 2 FKCPQCGALLKNIWSLREHIMIHTGERPHVC 32
++C +CG + L +H + HT E+P
Sbjct: 13 YQCSECGKSFSGSYRLTQHWITHTREKPSGP 43
Score = 29.0 bits (66), Expect = 0.13
Identities = 10/33 (30%), Positives = 13/33 (39%)
Query: 132 HIKTHTDNSLYICEICGKDFGTARYLKRHKDTH 164
+ Y C CGK F + L +H TH
Sbjct: 3 SGSSGEGEKPYQCSECGKSFSGSYRLTQHWITH 35
Score = 25.6 bits (57), Expect = 2.4
Identities = 8/33 (24%), Positives = 12/33 (36%)
Query: 160 HKDTHNSVNTFVCEVCNTGFKVKKHLTQHYKSH 192
+ + C C F LTQH+ +H
Sbjct: 3 SGSSGEGEKPYQCSECGKSFSGSYRLTQHWITH 35
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 48
Score = 46.5 bits (110), Expect = 8e-08
Identities = 11/36 (30%), Positives = 16/36 (44%)
Query: 57 RTHQCNHCGRAFSDKSNLTVHIRTHTDEKKYMCELC 92
+ C CG+ F D +L H +H+ EK Y
Sbjct: 11 KQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
Score = 38.0 bits (88), Expect = 1e-04
Identities = 10/35 (28%), Positives = 19/35 (54%)
Query: 2 FKCPQCGALLKNIWSLREHIMIHTGERPHVCHVCS 36
C CG + ++++ L H + H+GE+P+ S
Sbjct: 13 VACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPSS 47
Score = 34.9 bits (80), Expect = 0.001
Identities = 12/43 (27%), Positives = 18/43 (41%)
Query: 134 KTHTDNSLYICEICGKDFGTARYLKRHKDTHNSVNTFVCEVCN 176
+ CEICGK F +L RHK +H+ + +
Sbjct: 5 SSGRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPSS 47
Score = 33.4 bits (76), Expect = 0.004
Identities = 8/35 (22%), Positives = 15/35 (42%)
Query: 113 KFKCNYCEKVYNNPSNLQRHIKTHTDNSLYICEIC 147
+ C C K++ + +L RH +H+ Y
Sbjct: 12 QVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
Score = 31.8 bits (72), Expect = 0.013
Identities = 11/42 (26%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 79 RTHTDEKKYMCELCGAEFAQWATLYNHKFTHNDIK-FKCNYC 119
+ K+ CE+CG F L HK +H+ K +
Sbjct: 5 SSGRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
Score = 26.8 bits (59), Expect = 1.0
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 170 FVCEVCNTGFKVKKHLTQHYKSHS 193
CE+C F+ HL +H SHS
Sbjct: 13 VACEICGKIFRDVYHLNRHKLSHS 36
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 46.4 bits (111), Expect = 8e-08
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 59 HQCNHCGRAFSDKSNLTVHIRTHTDEKKYMC 89
HQC+ CGR F+ KS+L H R HT EK
Sbjct: 13 HQCHECGRGFTLKSHLNQHQRIHTGEKPSGP 43
Score = 32.9 bits (76), Expect = 0.006
Identities = 8/33 (24%), Positives = 13/33 (39%)
Query: 77 HIRTHTDEKKYMCELCGAEFAQWATLYNHKFTH 109
+ + K + C CG F + L H+ H
Sbjct: 3 SGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIH 35
Score = 30.6 bits (70), Expect = 0.036
Identities = 8/35 (22%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 104 NHKFTHNDIK-FKCNYCEKVYNNPSNLQRHIKTHT 137
+ + + K +C+ C + + S+L +H + HT
Sbjct: 2 SSGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIHT 36
Score = 29.4 bits (67), Expect = 0.091
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 2 FKCPQCGALLKNIWSLREHIMIHTGERPHVC 32
+C +CG L +H IHTGE+P
Sbjct: 13 HQCHECGRGFTLKSHLNQHQRIHTGEKPSGP 43
Score = 28.7 bits (65), Expect = 0.16
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 159 RHKDTHNSVNTFVCEVCNTGFKVKKHLTQHYKSH 192
+ +S + C C GF +K HL QH + H
Sbjct: 2 SSGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIH 35
Score = 28.3 bits (64), Expect = 0.24
Identities = 7/34 (20%), Positives = 14/34 (41%)
Query: 131 RHIKTHTDNSLYICEICGKDFGTARYLKRHKDTH 164
+ + + C CG+ F +L +H+ H
Sbjct: 2 SSGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIH 35
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 45.7 bits (109), Expect = 1e-07
Identities = 10/41 (24%), Positives = 14/41 (34%)
Query: 49 YKRVHERIRTHQCNHCGRAFSDKSNLTVHIRTHTDEKKYMC 89
+ QC CG FS +L H+R+H
Sbjct: 3 SGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGP 43
Score = 36.4 bits (85), Expect = 3e-04
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 77 HIRTHTDEKKYMCELCGAEFAQWATLYNHKFTH 109
+ T EK + C+ CG F+ +L+ H +H
Sbjct: 3 SGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSH 35
Score = 31.4 bits (72), Expect = 0.020
Identities = 9/31 (29%), Positives = 13/31 (41%)
Query: 2 FKCPQCGALLKNIWSLREHIMIHTGERPHVC 32
F+C +CG SL +H+ H P
Sbjct: 13 FQCKECGMNFSWSCSLFKHLRSHERTDPSGP 43
Score = 31.0 bits (71), Expect = 0.026
Identities = 8/33 (24%), Positives = 15/33 (45%)
Query: 132 HIKTHTDNSLYICEICGKDFGTARYLKRHKDTH 164
+ T + C+ CG +F + L +H +H
Sbjct: 3 SGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSH 35
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 41
Score = 45.6 bits (109), Expect = 2e-07
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 59 HQCNHCGRAFSDKSNLTVHIRTHTDEKKY 87
++C CG++F K +LT+H R HT
Sbjct: 11 YECQECGKSFRQKGSLTLHERIHTGSGPS 39
Score = 30.6 bits (70), Expect = 0.029
Identities = 9/31 (29%), Positives = 15/31 (48%)
Query: 79 RTHTDEKKYMCELCGAEFAQWATLYNHKFTH 109
+ ++ Y C+ CG F Q +L H+ H
Sbjct: 3 SGSSGQRVYECQECGKSFRQKGSLTLHERIH 33
Score = 29.1 bits (66), Expect = 0.12
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 2 FKCPQCGALLKNIWSLREHIMIHTGERPH 30
++C +CG + SL H IHTG P
Sbjct: 11 YECQECGKSFRQKGSLTLHERIHTGSGPS 39
Score = 26.8 bits (60), Expect = 0.81
Identities = 7/24 (29%), Positives = 12/24 (50%)
Query: 114 FKCNYCEKVYNNPSNLQRHIKTHT 137
++C C K + +L H + HT
Sbjct: 11 YECQECGKSFRQKGSLTLHERIHT 34
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 45.6 bits (109), Expect = 2e-07
Identities = 16/71 (22%), Positives = 21/71 (29%), Gaps = 29/71 (40%)
Query: 19 EHIMIHTGERPHVCHVCSKSFRNRGKLNVHYKRVHERIRTHQCNHCGRAFSDKSNLTVHI 78
+GE+P QC CG+ F+ S+L H
Sbjct: 2 SSGSSGSGEKP-----------------------------FQCEECGKRFTQNSHLHSHQ 32
Query: 79 RTHTDEKKYMC 89
R HT EK
Sbjct: 33 RVHTGEKPSGP 43
Score = 35.6 bits (83), Expect = 6e-04
Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 77 HIRTHTDEKKYMCELCGAEFAQWATLYNHKFTHNDIK-FKCN 117
+ + EK + CE CG F Q + L++H+ H K +
Sbjct: 3 SGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGPS 44
Score = 31.0 bits (71), Expect = 0.027
Identities = 11/32 (34%), Positives = 15/32 (46%)
Query: 2 FKCPQCGALLKNIWSLREHIMIHTGERPHVCH 33
F+C +CG L H +HTGE+P
Sbjct: 13 FQCEECGKRFTQNSHLHSHQRVHTGEKPSGPS 44
Score = 27.5 bits (62), Expect = 0.44
Identities = 9/34 (26%), Positives = 14/34 (41%)
Query: 131 RHIKTHTDNSLYICEICGKDFGTARYLKRHKDTH 164
+ + + CE CGK F +L H+ H
Sbjct: 2 SSGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVH 35
Score = 24.4 bits (54), Expect = 6.5
Identities = 9/34 (26%), Positives = 12/34 (35%)
Query: 159 RHKDTHNSVNTFVCEVCNTGFKVKKHLTQHYKSH 192
+ + F CE C F HL H + H
Sbjct: 2 SSGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVH 35
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 45.7 bits (109), Expect = 2e-07
Identities = 12/42 (28%), Positives = 16/42 (38%), Gaps = 4/42 (9%)
Query: 53 HERIRT----HQCNHCGRAFSDKSNLTVHIRTHTDEKKYMCE 90
+ H C+ CG+ F S L +H R H EK
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIHQRVHMGEKCSGPS 44
Score = 34.1 bits (79), Expect = 0.002
Identities = 9/33 (27%), Positives = 15/33 (45%)
Query: 77 HIRTHTDEKKYMCELCGAEFAQWATLYNHKFTH 109
+ + EK + C+ CG F + L H+ H
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIHQRVH 35
Score = 28.7 bits (65), Expect = 0.16
Identities = 8/33 (24%), Positives = 15/33 (45%)
Query: 132 HIKTHTDNSLYICEICGKDFGTARYLKRHKDTH 164
+ + + C+ CGK+F L+ H+ H
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIHQRVH 35
Score = 28.7 bits (65), Expect = 0.17
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 2 FKCPQCGALLKNIWSLREHIMIHTGERPHVC 32
C +CG I +LR H +H GE+
Sbjct: 13 HTCDECGKNFCYISALRIHQRVHMGEKCSGP 43
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 45.6 bits (109), Expect = 2e-07
Identities = 12/40 (30%), Positives = 17/40 (42%)
Query: 50 KRVHERIRTHQCNHCGRAFSDKSNLTVHIRTHTDEKKYMC 89
R + CN CG+ F S+L H++ H EK
Sbjct: 4 GSSGSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGP 43
Score = 33.6 bits (78), Expect = 0.003
Identities = 9/33 (27%), Positives = 14/33 (42%)
Query: 77 HIRTHTDEKKYMCELCGAEFAQWATLYNHKFTH 109
+ + E+ Y C CG F + + L H H
Sbjct: 3 SGSSGSGERPYGCNECGKNFGRHSHLIEHLKRH 35
Score = 31.7 bits (73), Expect = 0.014
Identities = 8/31 (25%), Positives = 12/31 (38%)
Query: 2 FKCPQCGALLKNIWSLREHIMIHTGERPHVC 32
+ C +CG L EH+ H E+
Sbjct: 13 YGCNECGKNFGRHSHLIEHLKRHFREKSSGP 43
Score = 30.2 bits (69), Expect = 0.056
Identities = 10/41 (24%), Positives = 15/41 (36%)
Query: 132 HIKTHTDNSLYICEICGKDFGTARYLKRHKDTHNSVNTFVC 172
+ + Y C CGK+FG +L H H +
Sbjct: 3 SGSSGSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGP 43
Score = 25.6 bits (57), Expect = 2.4
Identities = 8/34 (23%), Positives = 12/34 (35%)
Query: 160 HKDTHNSVNTFVCEVCNTGFKVKKHLTQHYKSHS 193
+ + + C C F HL +H K H
Sbjct: 3 SGSSGSGERPYGCNECGKNFGRHSHLIEHLKRHF 36
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens}
Length = 46
Score = 45.2 bits (108), Expect = 2e-07
Identities = 11/41 (26%), Positives = 15/41 (36%)
Query: 49 YKRVHERIRTHQCNHCGRAFSDKSNLTVHIRTHTDEKKYMC 89
+T +C C FS S+L +H H EK
Sbjct: 3 SGSSGMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGP 43
Score = 34.4 bits (80), Expect = 0.001
Identities = 10/42 (23%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 77 HIRTHTDEKKYMCELCGAEFAQWATLYNHKFTHNDIK-FKCN 117
+ EK + C C F+Q ++L H+ H K +
Sbjct: 3 SGSSGMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGPS 44
Score = 31.4 bits (72), Expect = 0.019
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 2 FKCPQCGALLKNIWSLREHIMIHTGERPHVC 32
+KC +C SLR H +H GE+P
Sbjct: 13 WKCRECDMCFSQASSLRLHQNVHVGEKPSGP 43
Score = 29.0 bits (66), Expect = 0.12
Identities = 7/33 (21%), Positives = 12/33 (36%)
Query: 132 HIKTHTDNSLYICEICGKDFGTARYLKRHKDTH 164
+ + C C F A L+ H++ H
Sbjct: 3 SGSSGMGEKTWKCRECDMCFSQASSLRLHQNVH 35
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
PDB: 2yta_A
Length = 42
Score = 45.3 bits (108), Expect = 2e-07
Identities = 8/29 (27%), Positives = 16/29 (55%)
Query: 59 HQCNHCGRAFSDKSNLTVHIRTHTDEKKY 87
+ C CG++F+ + +L VH R+ +
Sbjct: 12 YLCGQCGKSFTQRGSLAVHQRSCSQSGPS 40
Score = 32.3 bits (74), Expect = 0.008
Identities = 9/34 (26%), Positives = 15/34 (44%)
Query: 77 HIRTHTDEKKYMCELCGAEFAQWATLYNHKFTHN 110
+ E Y+C CG F Q +L H+ + +
Sbjct: 2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQRSCS 35
Score = 31.1 bits (71), Expect = 0.024
Identities = 8/29 (27%), Positives = 10/29 (34%)
Query: 2 FKCPQCGALLKNIWSLREHIMIHTGERPH 30
+ C QCG SL H + P
Sbjct: 12 YLCGQCGKSFTQRGSLAVHQRSCSQSGPS 40
Score = 23.8 bits (52), Expect = 8.6
Identities = 8/34 (23%), Positives = 14/34 (41%)
Query: 132 HIKTHTDNSLYICEICGKDFGTARYLKRHKDTHN 165
+ + Y+C CGK F L H+ + +
Sbjct: 2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQRSCS 35
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 44.8 bits (107), Expect = 3e-07
Identities = 17/70 (24%), Positives = 24/70 (34%), Gaps = 29/70 (41%)
Query: 20 HIMIHTGERPHVCHVCSKSFRNRGKLNVHYKRVHERIRTHQCNHCGRAFSDKSNLTVHIR 79
+GERP +K CN CG+ F +S+L H+R
Sbjct: 3 SGSSGSGERP-------------------FK----------CNECGKGFGRRSHLAGHLR 33
Query: 80 THTDEKKYMC 89
H+ EK
Sbjct: 34 LHSREKSSGP 43
Score = 33.7 bits (78), Expect = 0.003
Identities = 9/42 (21%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 77 HIRTHTDEKKYMCELCGAEFAQWATLYNHKFTHNDIK-FKCN 117
+ + E+ + C CG F + + L H H+ K +
Sbjct: 3 SGSSGSGERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGPS 44
Score = 31.0 bits (71), Expect = 0.025
Identities = 10/41 (24%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 105 HKFTHNDIK-FKCNYCEKVYNNPSNLQRHIKTHTDNSLYIC 144
+ + + FKCN C K + S+L H++ H+
Sbjct: 3 SGSSGSGERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGP 43
Score = 30.6 bits (70), Expect = 0.038
Identities = 9/31 (29%), Positives = 14/31 (45%)
Query: 2 FKCPQCGALLKNIWSLREHIMIHTGERPHVC 32
FKC +CG L H+ +H+ E+
Sbjct: 13 FKCNECGKGFGRRSHLAGHLRLHSREKSSGP 43
Score = 29.8 bits (68), Expect = 0.081
Identities = 9/34 (26%), Positives = 13/34 (38%)
Query: 131 RHIKTHTDNSLYICEICGKDFGTARYLKRHKDTH 164
+ + + C CGK FG +L H H
Sbjct: 2 SSGSSGSGERPFKCNECGKGFGRRSHLAGHLRLH 35
Score = 26.0 bits (58), Expect = 1.5
Identities = 10/35 (28%), Positives = 14/35 (40%)
Query: 159 RHKDTHNSVNTFVCEVCNTGFKVKKHLTQHYKSHS 193
+ + F C C GF + HL H + HS
Sbjct: 2 SSGSSGSGERPFKCNECGKGFGRRSHLAGHLRLHS 36
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 42
Score = 44.4 bits (106), Expect = 3e-07
Identities = 9/37 (24%), Positives = 11/37 (29%), Gaps = 6/37 (16%)
Query: 57 RTH------QCNHCGRAFSDKSNLTVHIRTHTDEKKY 87
+ C CG F L H+R HT
Sbjct: 4 GSSGGEKPYPCEICGTRFRHLQTLKSHLRIHTGSGPS 40
Score = 40.6 bits (96), Expect = 1e-05
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 77 HIRTHTDEKKYMCELCGAEFAQWATLYNHKFTH 109
+ EK Y CE+CG F TL +H H
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIH 34
Score = 36.3 bits (85), Expect = 3e-04
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 2 FKCPQCGALLKNIWSLREHIMIHTGERPH 30
+ C CG +++ +L+ H+ IHTG P
Sbjct: 12 YPCEICGTRFRHLQTLKSHLRIHTGSGPS 40
Score = 32.9 bits (76), Expect = 0.006
Identities = 11/33 (33%), Positives = 13/33 (39%)
Query: 132 HIKTHTDNSLYICEICGKDFGTARYLKRHKDTH 164
+ Y CEICG F + LK H H
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIH 34
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 47
Score = 44.5 bits (106), Expect = 4e-07
Identities = 13/42 (30%), Positives = 18/42 (42%), Gaps = 5/42 (11%)
Query: 53 HERIRT----HQCNHCGRAFSDKSNLTVHIR-THTDEKKYMC 89
T ++C CG+AF ++L H R HT EK
Sbjct: 3 SGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGP 44
Score = 33.7 bits (78), Expect = 0.003
Identities = 12/43 (27%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
Query: 77 HIRTHTDEKKYMCELCGAEFAQWATLYNH-KFTHNDIK-FKCN 117
+ T +K Y C CG F Q +L H ++ H K +
Sbjct: 3 SGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGPS 45
Score = 24.8 bits (55), Expect = 4.5
Identities = 10/29 (34%), Positives = 11/29 (37%)
Query: 132 HIKTHTDNSLYICEICGKDFGTARYLKRH 160
+ T Y C CGK F L RH
Sbjct: 3 SGSSGTGKKPYECIECGKAFIQNTSLIRH 31
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 44.4 bits (106), Expect = 4e-07
Identities = 13/68 (19%), Positives = 17/68 (25%), Gaps = 29/68 (42%)
Query: 20 HIMIHTGERPHVCHVCSKSFRNRGKLNVHYKRVHERIRTHQCNHCGRAFSDKSNLTVHIR 79
GE+P YK C CG F ++L H+
Sbjct: 2 SSGSSGGEKP-------------------YK----------CETCGARFVQVAHLRAHVL 32
Query: 80 THTDEKKY 87
HT
Sbjct: 33 IHTGSGPS 40
Score = 39.4 bits (93), Expect = 2e-05
Identities = 14/33 (42%), Positives = 15/33 (45%)
Query: 77 HIRTHTDEKKYMCELCGAEFAQWATLYNHKFTH 109
+ EK Y CE CGA F Q A L H H
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIH 34
Score = 32.1 bits (74), Expect = 0.011
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 2 FKCPQCGALLKNIWSLREHIMIHTGERPH 30
+KC CGA + LR H++IHTG P
Sbjct: 12 YKCETCGARFVQVAHLRAHVLIHTGSGPS 40
Score = 31.7 bits (73), Expect = 0.013
Identities = 9/33 (27%), Positives = 12/33 (36%)
Query: 132 HIKTHTDNSLYICEICGKDFGTARYLKRHKDTH 164
+ Y CE CG F +L+ H H
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIH 34
Score = 25.2 bits (56), Expect = 2.8
Identities = 8/33 (24%), Positives = 10/33 (30%)
Query: 160 HKDTHNSVNTFVCEVCNTGFKVKKHLTQHYKSH 192
+ + CE C F HL H H
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIH 34
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 44.1 bits (105), Expect = 5e-07
Identities = 11/71 (15%), Positives = 19/71 (26%), Gaps = 29/71 (40%)
Query: 20 HIMIHTGERPHVCHVCSKSFRNRGKLNVHYKRVHERIRTHQCNHCGRAFSDKSNLTVHIR 79
+G++P ++C C + F +L H R
Sbjct: 3 SGSSGSGKKP-----------------------------YECKECRKTFIQIGHLNQHKR 33
Query: 80 THTDEKKYMCE 90
HT E+
Sbjct: 34 VHTGERSSGPS 44
Score = 34.1 bits (79), Expect = 0.002
Identities = 10/33 (30%), Positives = 14/33 (42%)
Query: 77 HIRTHTDEKKYMCELCGAEFAQWATLYNHKFTH 109
+ + +K Y C+ C F Q L HK H
Sbjct: 3 SGSSGSGKKPYECKECRKTFIQIGHLNQHKRVH 35
Score = 31.7 bits (73), Expect = 0.015
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 2 FKCPQCGALLKNIWSLREHIMIHTGERPHVC 32
++C +C I L +H +HTGER
Sbjct: 13 YECKECRKTFIQIGHLNQHKRVHTGERSSGP 43
Score = 29.0 bits (66), Expect = 0.14
Identities = 9/34 (26%), Positives = 14/34 (41%)
Query: 131 RHIKTHTDNSLYICEICGKDFGTARYLKRHKDTH 164
+ + Y C+ C K F +L +HK H
Sbjct: 2 SSGSSGSGKKPYECKECRKTFIQIGHLNQHKRVH 35
Score = 25.6 bits (57), Expect = 2.5
Identities = 8/35 (22%), Positives = 14/35 (40%)
Query: 159 RHKDTHNSVNTFVCEVCNTGFKVKKHLTQHYKSHS 193
+ + + C+ C F HL QH + H+
Sbjct: 2 SSGSSGSGKKPYECKECRKTFIQIGHLNQHKRVHT 36
>2ent_A Krueppel-like factor 15; zinc binding, transcription factor,
adipogenesis, CLCNKA, chloride channel Ka, rhodopsin,
IRBP; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 48
Score = 43.8 bits (104), Expect = 7e-07
Identities = 14/71 (19%), Positives = 18/71 (25%), Gaps = 27/71 (38%)
Query: 20 HIMIHTGERPHVCHVCSKSFRNRGKLNVHYKRVHERIRTHQCNHCGRAFSDKSNLTVHIR 79
TGE+P C CG FS L+ H R
Sbjct: 3 SGSSGTGEKPFACTW---------------------------PGCGWRFSRSDELSRHRR 35
Query: 80 THTDEKKYMCE 90
+H+ K
Sbjct: 36 SHSGVKPSGPS 46
Score = 32.3 bits (74), Expect = 0.011
Identities = 10/44 (22%), Positives = 16/44 (36%), Gaps = 2/44 (4%)
Query: 132 HIKTHTDNSLYIC--EICGKDFGTARYLKRHKDTHNSVNTFVCE 173
+ T + C CG F + L RH+ +H+ V
Sbjct: 3 SGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPS 46
Score = 31.1 bits (71), Expect = 0.024
Identities = 10/69 (14%), Positives = 17/69 (24%), Gaps = 25/69 (36%)
Query: 77 HIRTHTDEKKYMCELCGAEFAQWATLYNHKFTHNDIKFKCNYCEKVYNNPSNLQRHIKTH 136
+ T EK + C G C ++ L RH ++H
Sbjct: 3 SGSSGTGEKPFACTWPG-------------------------CGWRFSRSDELSRHRRSH 37
Query: 137 TDNSLYICE 145
+
Sbjct: 38 SGVKPSGPS 46
Score = 25.7 bits (57), Expect = 2.3
Identities = 5/16 (31%), Positives = 7/16 (43%)
Query: 17 LREHIMIHTGERPHVC 32
L H H+G +P
Sbjct: 30 LSRHRRSHSGVKPSGP 45
>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 43.0 bits (102), Expect = 2e-06
Identities = 12/71 (16%), Positives = 19/71 (26%), Gaps = 29/71 (40%)
Query: 19 EHIMIHTGERPHVCHVCSKSFRNRGKLNVHYKRVHERIRTHQCNHCGRAFSDKSNLTVHI 78
T + + CN CG+AF+ +LT H
Sbjct: 2 SSGSSGTDSKS-----------------------------YNCNECGKAFTRIFHLTRHQ 32
Query: 79 RTHTDEKKYMC 89
+ HT +
Sbjct: 33 KIHTRKSGPSS 43
Score = 34.5 bits (80), Expect = 0.001
Identities = 11/33 (33%), Positives = 14/33 (42%)
Query: 77 HIRTHTDEKKYMCELCGAEFAQWATLYNHKFTH 109
+ TD K Y C CG F + L H+ H
Sbjct: 3 SGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIH 35
Score = 30.6 bits (70), Expect = 0.034
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 132 HIKTHTDNSLYICEICGKDFGTARYLKRHKDTH 164
+ TD+ Y C CGK F +L RH+ H
Sbjct: 3 SGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIH 35
Score = 25.6 bits (57), Expect = 2.1
Identities = 9/31 (29%), Positives = 13/31 (41%)
Query: 2 FKCPQCGALLKNIWSLREHIMIHTGERPHVC 32
+ C +CG I+ L H IHT +
Sbjct: 13 YNCNECGKAFTRIFHLTRHQKIHTRKSGPSS 43
Score = 24.5 bits (54), Expect = 5.8
Identities = 9/34 (26%), Positives = 14/34 (41%)
Query: 160 HKDTHNSVNTFVCEVCNTGFKVKKHLTQHYKSHS 193
+ ++ C C F HLT+H K H+
Sbjct: 3 SGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHT 36
>1ej6_B Lambda1; icosahedral, non-equivalence, dsRNA virus, methylase,
methyltransferase, guanylyltransferase, zinc finger,
icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1
PDB: 2cse_V
Length = 1275
Score = 44.8 bits (105), Expect = 1e-05
Identities = 6/36 (16%), Positives = 11/36 (30%)
Query: 50 KRVHERIRTHQCNHCGRAFSDKSNLTVHIRTHTDEK 85
+QC+ C +L H+ +H
Sbjct: 172 PPTASSGHGYQCHVCSAVLFSPLDLDAHVASHGLHG 207
Score = 38.3 bits (88), Expect = 0.001
Identities = 7/51 (13%), Positives = 13/51 (25%)
Query: 119 CEKVYNNPSNLQRHIKTHTDNSLYICEICGKDFGTARYLKRHKDTHNSVNT 169
+ + T + Y C +C + L H +H
Sbjct: 158 TSAIVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVASHGLHGN 208
Score = 37.5 bits (86), Expect = 0.002
Identities = 9/44 (20%), Positives = 12/44 (27%)
Query: 68 FSDKSNLTVHIRTHTDEKKYMCELCGAEFAQWATLYNHKFTHND 111
S T + Y C +C A L H +H
Sbjct: 162 VSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVASHGL 205
Score = 34.4 bits (78), Expect = 0.030
Identities = 7/26 (26%), Positives = 14/26 (53%)
Query: 113 KFKCNYCEKVYNNPSNLQRHIKTHTD 138
++C+ C V +P +L H+ +H
Sbjct: 180 GYQCHVCSAVLFSPLDLDAHVASHGL 205
Score = 33.7 bits (76), Expect = 0.049
Identities = 11/51 (21%), Positives = 15/51 (29%)
Query: 143 ICEICGKDFGTARYLKRHKDTHNSVNTFVCEVCNTGFKVKKHLTQHYKSHS 193
I E T +S + + C VC+ L H SH
Sbjct: 154 IAEATSAIVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVASHG 204
Score = 31.7 bits (71), Expect = 0.21
Identities = 9/52 (17%), Positives = 16/52 (30%), Gaps = 1/52 (1%)
Query: 2 FKCPQCGALLKNIWSLREHIMIHTGERPHVCHVCSKSFRNRGKLNVHYKRVH 53
A++ + + + CHVCS + L+ H H
Sbjct: 153 RIAEATSAIVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAH-VASH 203
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Length = 129
Score = 41.8 bits (97), Expect = 2e-05
Identities = 19/105 (18%), Positives = 36/105 (34%), Gaps = 3/105 (2%)
Query: 32 CHVCSKSFRNRGKLNVHYKRVHERIRTHQCNHCGRAFSDKSNLTVHIRTHTDEKKYMCEL 91
HV + + +L KR+ I D+S+ + +++C L
Sbjct: 22 IHVTLEELKRYHQLTPEQKRLIRAIVKTLI--HNPQLLDESSYLYRLLASKAISQFVCPL 79
Query: 92 CGAEFAQWATLYNHKFTHNDIKFKCNYCEKVYNNPSNLQRHIKTH 136
C F+ +L H K C C+K + + + H+
Sbjct: 80 CLMPFSSSVSLKQHIRYTEHTK-VCPVCKKEFTSTDSALDHVCKK 123
Score = 36.8 bits (84), Expect = 0.001
Identities = 17/57 (29%), Positives = 23/57 (40%), Gaps = 2/57 (3%)
Query: 2 FKCPQCGALLKNIWSLREHIMIHTGERPHVCHVCSKSFRNRGKLNVHYKRVHERIRT 58
F CP C + SL++HI E VC VC K F + H + H +
Sbjct: 75 FVCPLCLMPFSSSVSLKQHIRYT--EHTKVCPVCKKEFTSTDSALDHVCKKHNICVS 129
Score = 36.5 bits (83), Expect = 0.002
Identities = 19/108 (17%), Positives = 33/108 (30%), Gaps = 2/108 (1%)
Query: 85 KKYMCELCGAEFAQWATLYNHKFTHNDIKFKCNYCEKVYNNPSNLQRHIKTHTDNSLYIC 144
K + E ++ L + K + S+ + S ++C
Sbjct: 18 KGIFIHVTLEELKRYHQLTPEQKRLIRAIVKTLIHNPQLLDESSYLYRLLASKAISQFVC 77
Query: 145 EICGKDFGTARYLKRHKDTHNSVNTFVCEVCNTGFKVKKHLTQHYKSH 192
+C F ++ LK+H +T VC VC F H
Sbjct: 78 PLCLMPFSSSVSLKQHIRYTE--HTKVCPVCKKEFTSTDSALDHVCKK 123
Score = 36.1 bits (82), Expect = 0.002
Identities = 12/66 (18%), Positives = 21/66 (31%), Gaps = 3/66 (4%)
Query: 16 SLREHIMIHTGERPHVCHVCSKSFRNRGKLNVHYKRVHERIRTHQCNHCGRAFSDKSNLT 75
S ++ VC +C F + L H + T C C + F+ +
Sbjct: 61 SYLYRLLASKAISQFVCPLCLMPFSSSVSLKQH---IRYTEHTKVCPVCKKEFTSTDSAL 117
Query: 76 VHIRTH 81
H+
Sbjct: 118 DHVCKK 123
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 39.2 bits (92), Expect = 3e-05
Identities = 9/31 (29%), Positives = 13/31 (41%)
Query: 59 HQCNHCGRAFSDKSNLTVHIRTHTDEKKYMC 89
+ C C FSD + L H + HT +
Sbjct: 11 YSCAECKETFSDNNRLVQHQKMHTVKSGPSS 41
Score = 31.5 bits (72), Expect = 0.015
Identities = 9/31 (29%), Positives = 12/31 (38%)
Query: 79 RTHTDEKKYMCELCGAEFAQWATLYNHKFTH 109
+ EK Y C C F+ L H+ H
Sbjct: 3 SGSSGEKPYSCAECKETFSDNNRLVQHQKMH 33
Score = 26.9 bits (60), Expect = 0.80
Identities = 7/31 (22%), Positives = 11/31 (35%)
Query: 134 KTHTDNSLYICEICGKDFGTARYLKRHKDTH 164
+ Y C C + F L +H+ H
Sbjct: 3 SGSSGEKPYSCAECKETFSDNNRLVQHQKMH 33
Score = 25.7 bits (57), Expect = 1.9
Identities = 6/31 (19%), Positives = 12/31 (38%)
Query: 2 FKCPQCGALLKNIWSLREHIMIHTGERPHVC 32
+ C +C + L +H +HT +
Sbjct: 11 YSCAECKETFSDNNRLVQHQKMHTVKSGPSS 41
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 44
Score = 36.8 bits (85), Expect = 2e-04
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 60 QCNHCGRAFSDKSNLTVHIRTHTDEK 85
+C+ C R F+ ++ L H RTH +
Sbjct: 14 KCSKCDRVFTQRNYLVQHERTHARKS 39
Score = 30.2 bits (68), Expect = 0.047
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 114 FKCNYCEKVYNNPSNLQRHIKTHTD 138
FKC+ C++V+ + L +H +TH
Sbjct: 13 FKCSKCDRVFTQRNYLVQHERTHAR 37
Score = 29.4 bits (66), Expect = 0.11
Identities = 9/33 (27%), Positives = 12/33 (36%)
Query: 77 HIRTHTDEKKYMCELCGAEFAQWATLYNHKFTH 109
+ E + C C F Q L H+ TH
Sbjct: 3 SGSSGAGENPFKCSKCDRVFTQRNYLVQHERTH 35
Score = 29.1 bits (65), Expect = 0.15
Identities = 9/35 (25%), Positives = 16/35 (45%)
Query: 159 RHKDTHNSVNTFVCEVCNTGFKVKKHLTQHYKSHS 193
+ N F C C+ F + +L QH ++H+
Sbjct: 2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHA 36
Score = 28.3 bits (63), Expect = 0.28
Identities = 8/34 (23%), Positives = 14/34 (41%)
Query: 131 RHIKTHTDNSLYICEICGKDFGTARYLKRHKDTH 164
+ + + C C + F YL +H+ TH
Sbjct: 2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQHERTH 35
Score = 26.4 bits (58), Expect = 1.1
Identities = 7/29 (24%), Positives = 11/29 (37%)
Query: 2 FKCPQCGALLKNIWSLREHIMIHTGERPH 30
FKC +C + L +H H +
Sbjct: 13 FKCSKCDRVFTQRNYLVQHERTHARKSGP 41
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A
1are_A
Length = 29
Score = 36.1 bits (84), Expect = 3e-04
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 57 RTHQCNHCGRAFSDKSNLTVHIRTHTDEK 85
R+ C C RAF+ + +L H R+HT+EK
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK 29
Score = 29.2 bits (66), Expect = 0.095
Identities = 13/25 (52%), Positives = 19/25 (76%)
Query: 169 TFVCEVCNTGFKVKKHLTQHYKSHS 193
+FVCEVC F ++HL +HY+SH+
Sbjct: 2 SFVCEVCTRAFARQEHLKRHYRSHT 26
Score = 27.3 bits (61), Expect = 0.38
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 113 KFKCNYCEKVYNNPSNLQRHIKTHT 137
F C C + + +L+RH ++HT
Sbjct: 2 SFVCEVCTRAFARQEHLKRHYRSHT 26
Score = 26.1 bits (58), Expect = 0.92
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 142 YICEICGKDFGTARYLKRHKDTH 164
++CE+C + F +LKRH +H
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSH 25
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc
finger, classical zinc finger, transcription; NMR {Homo
sapiens}
Length = 30
Score = 36.3 bits (83), Expect = 3e-04
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 56 IRTHQCNHCGRAFSDKSNLTVHIRTHTDEK 85
++ + C HC R F+D L H+R HT EK
Sbjct: 1 MKPYVCIHCQRQFADPGALQRHVRIHTGEK 30
Score = 30.5 bits (68), Expect = 0.033
Identities = 9/24 (37%), Positives = 17/24 (70%)
Query: 114 FKCNYCEKVYNNPSNLQRHIKTHT 137
+ C +C++ + +P LQRH++ HT
Sbjct: 4 YVCIHCQRQFADPGALQRHVRIHT 27
Score = 24.7 bits (53), Expect = 4.1
Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 5/33 (15%)
Query: 28 RPHVCHVCSKSFRNRGKLNVHYKRVHERIRTHQ 60
+P+VC C + F + G L + H RI T +
Sbjct: 2 KPYVCIHCQRQFADPGAL-----QRHVRIHTGE 29
Score = 24.3 bits (52), Expect = 5.6
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 2 FKCPQCGALLKNIWSLREHIMIHTGER 28
+ C C + +L+ H+ IHTGE+
Sbjct: 4 YVCIHCQRQFADPGALQRHVRIHTGEK 30
>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding
protein; NMR {Homo sapiens}
Length = 37
Score = 36.2 bits (84), Expect = 4e-04
Identities = 11/34 (32%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Query: 54 ERIRTHQCNH--CGRAFSDKSNLTVHIRTHTDEK 85
+ + H C+ CG+ + S+L H+R HT E+
Sbjct: 4 GKKKQHICHIQGCGKVYGKTSHLRAHLRWHTGER 37
Score = 27.7 bits (62), Expect = 0.39
Identities = 10/27 (37%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Query: 113 KFKCNY--CEKVYNNPSNLQRHIKTHT 137
+ C+ C KVY S+L+ H++ HT
Sbjct: 8 QHICHIQGCGKVYGKTSHLRAHLRWHT 34
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger,
transcription factor, DNA binding protein; NMR {Mus
musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Length = 37
Score = 34.6 bits (80), Expect = 0.001
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 51 RVHERIRTHQCNHCGRAFSDKSNLTVHIRTH 81
R I+ QC C R+FS +L +H + H
Sbjct: 4 RGSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34
Score = 33.1 bits (76), Expect = 0.004
Identities = 11/32 (34%), Positives = 14/32 (43%)
Query: 20 HIMIHTGERPHVCHVCSKSFRNRGKLNVHYKR 51
TG +P C C +SF L +H KR
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKR 33
Score = 31.9 bits (73), Expect = 0.012
Identities = 9/33 (27%), Positives = 13/33 (39%)
Query: 77 HIRTHTDEKKYMCELCGAEFAQWATLYNHKFTH 109
R T K + C C F++ L H+ H
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34
Score = 27.3 bits (61), Expect = 0.48
Identities = 7/33 (21%), Positives = 13/33 (39%)
Query: 132 HIKTHTDNSLYICEICGKDFGTARYLKRHKDTH 164
+ T + C C + F + +L H+ H
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34
Score = 26.9 bits (60), Expect = 0.57
Identities = 9/35 (25%), Positives = 12/35 (34%)
Query: 160 HKDTHNSVNTFVCEVCNTGFKVKKHLTQHYKSHSM 194
+ F C C+ F HL H K H +
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHML 36
>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens}
SCOP: g.37.1.1 PDB: 1va2_A
Length = 31
Score = 32.6 bits (75), Expect = 0.006
Identities = 13/31 (41%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
Query: 57 RTHQCNH--CGRAFSDKSNLTVHIRTHTDEK 85
R C CG+ F+ L H RTHT EK
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
Score = 27.2 bits (61), Expect = 0.43
Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
Query: 114 FKCNY--CEKVYNNPSNLQRHIKTHT 137
F C + C K + LQRH +THT
Sbjct: 3 FMCTWSYCGKRFTRSDELQRHKRTHT 28
>3gox_A Restriction endonuclease HPY99I; endonuclease-DNA complex,
restriction enzyme, HPY99I, pseudopalindrome; HET: 1PE;
1.50A {Helicobacter pylori} PDB: 3fc3_A*
Length = 200
Score = 35.2 bits (80), Expect = 0.008
Identities = 22/127 (17%), Positives = 33/127 (25%), Gaps = 10/127 (7%)
Query: 62 NHCGRAFSDKSNLTVHIRTHTDEKKYMCELCGAE--FAQWATLYNHKFTHNDIKFKCNYC 119
N R + RT K +C +C + + C C
Sbjct: 51 NELKRVDFSELEAIDIYRTGKGYDKKICNICHILKNTDGFEINQTDAKGRKTTRPSCREC 110
Query: 120 EKVYNNPSNLQRHIKT-----HTDNSLYICEICGKDFGTARYLKR---HKDTHNSVNTFV 171
K + K S++ C IC K H ++
Sbjct: 111 RKNIDGVKLSSTEKKKMDEIAPPKGSVFTCPICEKRSIVGVTANLVHDHNHDTGWGREWI 170
Query: 172 CEVCNTG 178
C+ CNTG
Sbjct: 171 CDSCNTG 177
>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers,
4-stranded parallel/anti-parallel beta- sheet,
structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1
Length = 102
Score = 32.8 bits (74), Expect = 0.022
Identities = 12/85 (14%), Positives = 26/85 (30%), Gaps = 6/85 (7%)
Query: 72 SNLTVHIRTHTDEKKYMCELCGAEFAQWATLYNHKFT-HNDIK----FKCNYCEKVYNNP 126
+ + + E Y C+ C + H + H ++ + C C +
Sbjct: 4 HHHHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRY 63
Query: 127 SNLQRHI-KTHTDNSLYICEICGKD 150
L H K H + + ++
Sbjct: 64 DALSEHNLKYHPGEENFKLTMVKRN 88
Score = 29.7 bits (66), Expect = 0.22
Identities = 11/80 (13%), Positives = 23/80 (28%), Gaps = 4/80 (5%)
Query: 16 SLREHIMIHTGERPHVCHVCSKSFRNRGKLNVHYKRVHERIR---THQCNHCGRAFSDKS 72
+ E + C C+ + H H + ++ C C
Sbjct: 5 HHHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYD 64
Query: 73 NLTVHI-RTHTDEKKYMCEL 91
L+ H + H E+ + +
Sbjct: 65 ALSEHNLKYHPGEENFKLTM 84
Score = 28.2 bits (62), Expect = 0.84
Identities = 10/56 (17%), Positives = 20/56 (35%), Gaps = 4/56 (7%)
Query: 2 FKCPQCGALLKNIWSLREHI-MIHTGER---PHVCHVCSKSFRNRGKLNVHYKRVH 53
++C C ++ H+ H +VC C+ + L+ H + H
Sbjct: 19 YECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEHNLKYH 74
Score = 27.0 bits (59), Expect = 2.3
Identities = 16/72 (22%), Positives = 27/72 (37%), Gaps = 8/72 (11%)
Query: 127 SNLQRHIKTHTDNSLYICEICGKDFGTAR--YLKRHKDT-HNSVN---TFVCEVCNTGFK 180
+ + + Y C+ C F T H D+ H +V ++VC CN K
Sbjct: 4 HHHHHNQQNKKVEGGYECKYC--TFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTK 61
Query: 181 VKKHLTQHYKSH 192
L++H +
Sbjct: 62 RYDALSEHNLKY 73
>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC),
C2H2, APO metal-binding, nucleus, phosphoprotein,
transcription, TRAN regulation; 1.80A {Homo sapiens}
Length = 48
Score = 31.3 bits (70), Expect = 0.023
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 27 ERPHVCHVCSKSFRNRGKLNVHYKRVH 53
++P+ C +C K ++NR L+ HY H
Sbjct: 5 DKPYACDICGKRYKNRPGLSYHYAHSH 31
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 98
Score = 32.6 bits (73), Expect = 0.024
Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
Query: 2 FKCPQCGALL-KNIWSLREHI-MIHTGERPHVCHVCSKSFRNRGKLNVHYKRVHE 54
CP C + K + L++H+ + + C C K F+++ LN H H
Sbjct: 25 AVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHS 79
Score = 29.5 bits (65), Expect = 0.31
Identities = 13/51 (25%), Positives = 19/51 (37%), Gaps = 1/51 (1%)
Query: 31 VCHVCSKSFRNRGK-LNVHYKRVHERIRTHQCNHCGRAFSDKSNLTVHIRT 80
VC C+ R L H + + +C HC + F K+ L H
Sbjct: 26 VCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMA 76
Score = 25.7 bits (55), Expect = 6.0
Identities = 8/29 (27%), Positives = 10/29 (34%)
Query: 1 MFKCPQCGALLKNIWSLREHIMIHTGERP 29
KC C K+ L H M +P
Sbjct: 54 ALKCQHCRKQFKSKAGLNYHTMAEHSAKP 82
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc
finger, transcription; NMR {Homo sapiens}
Length = 29
Score = 30.5 bits (68), Expect = 0.032
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 60 QCNHCGRAFSDKSNLTVHIRTHTDEK 85
QC CG+AF+ S+L H+R HT EK
Sbjct: 4 QCVMCGKAFTQASSLIAHVRQHTGEK 29
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 96
Score = 31.8 bits (71), Expect = 0.040
Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
Query: 2 FKCPQCGALL-KNIWSLREHIMIHTGERPHVCHVCSKSFRNRGKLNVHYKRVH 53
CP C A+ K I L++H M + + CH C K R+ + H H
Sbjct: 35 VSCPTCQAVGRKTIEGLKKH-MENCKQEMFTCHHCGKQLRSLAGMKYHVMANH 86
Score = 25.2 bits (54), Expect = 9.7
Identities = 11/54 (20%), Positives = 19/54 (35%), Gaps = 1/54 (1%)
Query: 83 DEKKYMCELCGA-EFAQWATLYNHKFTHNDIKFKCNYCEKVYNNPSNLQRHIKT 135
D+ C C A L H F C++C K + + ++ H+
Sbjct: 31 DKGSVSCPTCQAVGRKTIEGLKKHMENCKQEMFTCHHCGKQLRSLAGMKYHVMA 84
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 30.2 bits (67), Expect = 0.048
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 55 RIRTHQCNHCGRAFSDKSNLTVHIRTHTDEK 85
+ ++C C A + K+NL VH+R HT EK
Sbjct: 6 SGKPYKCPQCSYASAIKANLNVHLRKHTGEK 36
>3iyl_X VP3; non-enveloped virus, membrane penetration protein, autocleav
myristol group, icosahedral virus; HET: MYR; 3.30A
{Grass carp reovirus} PDB: 3k1q_C 3k1q_B
Length = 1214
Score = 33.6 bits (76), Expect = 0.050
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 30 HVCHVCSKSFRNRGKLNVHYKRVH 53
+VC+VC+ F L+ H + H
Sbjct: 117 YVCNVCNARFSTMSALSEHLRSDH 140
Score = 31.7 bits (71), Expect = 0.18
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 59 HQCNHCGRAFSDKSNLTVHIRT 80
+ CN C FS S L+ H+R+
Sbjct: 117 YVCNVCNARFSTMSALSEHLRS 138
>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif,
transcription regulation, zinc-finger; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 47
Score = 29.8 bits (67), Expect = 0.088
Identities = 10/44 (22%), Positives = 23/44 (52%)
Query: 42 RGKLNVHYKRVHERIRTHQCNHCGRAFSDKSNLTVHIRTHTDEK 85
RG ++ + K + ++ C + F + N+ HI+TH +++
Sbjct: 4 RGSIDKYVKEMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR 47
Score = 27.9 bits (62), Expect = 0.34
Identities = 10/31 (32%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Query: 111 DIKFKCNY--CEKVYNNPSNLQRHIKTHTDN 139
D F+C + C K + N++ HI+TH ++
Sbjct: 16 DKTFECLFPGCTKTFKRRYNIRSHIQTHLED 46
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 31.9 bits (72), Expect = 0.10
Identities = 8/33 (24%), Positives = 12/33 (36%), Gaps = 7/33 (21%)
Query: 3 KCPQCGALLKNIWSLREHIMIHTGERPHVCHVC 35
CP+C I + G+ VC +C
Sbjct: 23 TCPECKVYPPKI--VERF---SEGDV--VCALC 48
Score = 26.2 bits (57), Expect = 7.1
Identities = 9/52 (17%), Positives = 13/52 (25%), Gaps = 9/52 (17%)
Query: 134 KTHTDNSLYICEICGKDFGTARYLKRHKDTHNSVNTFVCEVCNTGFKVKKHL 185
+ N + C C D VC +C G + L
Sbjct: 14 RGPNLNIVLTCPECKVYPPKIVERFSEGDV-------VCALC--GLVLSDKL 56
>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 29.4 bits (65), Expect = 0.11
Identities = 11/32 (34%), Positives = 15/32 (46%)
Query: 55 RIRTHQCNHCGRAFSDKSNLTVHIRTHTDEKK 86
R ++HQC CG F +L H H +K
Sbjct: 9 REKSHQCRECGEIFFQYVSLIEHQVLHMGQKN 40
Score = 27.9 bits (61), Expect = 0.34
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 82 TDEKKYMCELCGAEFAQWATLYNHKFTH 109
+ EK + C CG F Q+ +L H+ H
Sbjct: 8 SREKSHQCRECGEIFFQYVSLIEHQVLH 35
Score = 25.5 bits (55), Expect = 2.9
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 2 FKCPQCGALLKNIWSLREHIMIHTGER 28
+C +CG + SL EH ++H G++
Sbjct: 13 HQCRECGEIFFQYVSLIEHQVLHMGQK 39
Score = 24.4 bits (52), Expect = 7.9
Identities = 7/24 (29%), Positives = 10/24 (41%)
Query: 25 TGERPHVCHVCSKSFRNRGKLNVH 48
+ E+ H C C + F L H
Sbjct: 8 SREKSHQCRECGEIFFQYVSLIEH 31
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 29.0 bits (64), Expect = 0.11
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 84 EKKYMCELCGAEFAQWATLYNHKFTHND 111
K ++C++CG +F TL +HK H
Sbjct: 7 GKTHLCDMCGKKFKSKGTLKSHKLLHTA 34
Score = 27.5 bits (60), Expect = 0.38
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 57 RTHQCNHCGRAFSDKSNLTVHIRTHTDE 84
+TH C+ CG+ F K L H HT +
Sbjct: 8 KTHLCDMCGKKFKSKGTLKSHKLLHTAD 35
Score = 24.4 bits (52), Expect = 5.6
Identities = 8/22 (36%), Positives = 14/22 (63%)
Query: 27 ERPHVCHVCSKSFRNRGKLNVH 48
+ H+C +C K F+++G L H
Sbjct: 7 GKTHLCDMCGKKFKSKGTLKSH 28
Score = 24.0 bits (51), Expect = 7.1
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 142 YICEICGKDFGTARYLKRHKDTHNS 166
++C++CGK F + LK HK H +
Sbjct: 10 HLCDMCGKKFKSKGTLKSHKLLHTA 34
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 45
Score = 29.1 bits (64), Expect = 0.13
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 164 HNSVNTFVCEVCNTGFKVKKHLTQHYKSHS 193
+ + C VC FK K ++ H +SH
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSHD 34
Score = 28.7 bits (63), Expect = 0.20
Identities = 8/27 (29%), Positives = 17/27 (62%)
Query: 24 HTGERPHVCHVCSKSFRNRGKLNVHYK 50
+GE+P+ C VC F+ + +++ H +
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVR 31
Score = 27.2 bits (59), Expect = 0.76
Identities = 8/29 (27%), Positives = 14/29 (48%)
Query: 53 HERIRTHQCNHCGRAFSDKSNLTVHIRTH 81
+ + C CG F K ++ H+R+H
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSH 33
Score = 25.6 bits (55), Expect = 2.3
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 81 HTDEKKYMCELCGAEFAQWATLYNHKFTHN 110
+ EK Y C +CG F + + H +H+
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSHD 34
Score = 24.5 bits (52), Expect = 6.5
Identities = 7/30 (23%), Positives = 12/30 (40%)
Query: 136 HTDNSLYICEICGKDFGTARYLKRHKDTHN 165
+ Y C +CG F + H +H+
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSHD 34
>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein,
helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis}
SCOP: g.37.1.4 g.37.1.4
Length = 127
Score = 31.1 bits (69), Expect = 0.13
Identities = 18/83 (21%), Positives = 26/83 (31%), Gaps = 5/83 (6%)
Query: 116 CNYCEKVYNNPSNLQRHI--KTHTDN-SLYICEICGKDFGTARYLKRHKDTHNSVNT--F 170
C C V + S H + H + Y+ G+D A+ K +
Sbjct: 35 CKVCSAVLISESQKLAHYQSRKHANKVRRYMAINQGEDSVPAKKFKAAPAEISDGEDRSK 94
Query: 171 VCEVCNTGFKVKKHLTQHYKSHS 193
C VCN F HY +
Sbjct: 95 CCPVCNMTFSSPVVAESHYIGKT 117
Score = 28.4 bits (62), Expect = 1.1
Identities = 15/82 (18%), Positives = 26/82 (31%), Gaps = 4/82 (4%)
Query: 28 RPHVCHVCSKSFRNRGKLNVHYK-RVHER-IRTHQCNHCGRAFSDKSNLTVHIRTHTDE- 84
C VCS + + HY+ R H +R + + G +D
Sbjct: 31 SDTQCKVCSAVLISESQKLAHYQSRKHANKVRRYMAINQGEDSVPAKKFKAAPAEISDGE 90
Query: 85 -KKYMCELCGAEFAQWATLYNH 105
+ C +C F+ +H
Sbjct: 91 DRSKCCPVCNMTFSSPVVAESH 112
Score = 27.2 bits (59), Expect = 2.3
Identities = 15/92 (16%), Positives = 24/92 (26%), Gaps = 8/92 (8%)
Query: 56 IRTHQCNHCGRAFSDKSNLTVHIRTHTDEKKY------MCELCGAEFAQWATLYNHKFTH 109
QC C +S H ++ K ++
Sbjct: 30 FSDTQCKVCSAVLISESQKLAHYQSRKHANKVRRYMAINQGEDSVPAKKFKAAPAEISDG 89
Query: 110 NDIKFKCNYCEKVYNNPSNLQRHI--KTHTDN 139
D C C +++P + H KTH N
Sbjct: 90 EDRSKCCPVCNMTFSSPVVAESHYIGKTHIKN 121
>3ray_A PR domain-containing protein 11; structural genomics consortium,
SGC, histone methylation, Zn transcriptional regulation,
chromatin, transcription; 1.73A {Homo sapiens}
Length = 237
Score = 31.3 bits (70), Expect = 0.18
Identities = 6/33 (18%), Positives = 13/33 (39%)
Query: 105 HKFTHNDIKFKCNYCEKVYNNPSNLQRHIKTHT 137
+ + + E+V +NP +L+ I
Sbjct: 200 RNLARGEKRLQREKSEQVLDNPEDLRGPIHLSV 232
Score = 30.6 bits (68), Expect = 0.29
Identities = 7/62 (11%), Positives = 14/62 (22%)
Query: 131 RHIKTHTDNSLYICEICGKDFGTARYLKRHKDTHNSVNTFVCEVCNTGFKVKKHLTQHYK 190
R I+ ++ E K + H++ E + L
Sbjct: 170 RDIRPGEWLRVWYSEDYMKRLHSMSQETIHRNLARGEKRLQREKSEQVLDNPEDLRGPIH 229
Query: 191 SH 192
Sbjct: 230 LS 231
Score = 27.5 bits (60), Expect = 3.3
Identities = 5/45 (11%), Positives = 9/45 (20%)
Query: 116 CNYCEKVYNNPSNLQRHIKTHTDNSLYICEICGKDFGTARYLKRH 160
K ++ S H E + L+
Sbjct: 183 SEDYMKRLHSMSQETIHRNLARGEKRLQREKSEQVLDNPEDLRGP 227
Score = 27.1 bits (59), Expect = 4.6
Identities = 3/36 (8%), Positives = 10/36 (27%)
Query: 50 KRVHERIRTHQCNHCGRAFSDKSNLTVHIRTHTDEK 85
+ + + Q + + +L I +
Sbjct: 200 RNLARGEKRLQREKSEQVLDNPEDLRGPIHLSVLRQ 235
>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 27.9 bits (61), Expect = 0.37
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 2 FKCPQCGALLKNIWSLREHIMIHTGE 27
+C +CG + ++ L EH +H GE
Sbjct: 13 SECQECGKIFRHSSLLIEHQALHAGE 38
Score = 26.8 bits (58), Expect = 1.0
Identities = 10/27 (37%), Positives = 12/27 (44%)
Query: 58 THQCNHCGRAFSDKSNLTVHIRTHTDE 84
T +C CG+ F S L H H E
Sbjct: 12 TSECQECGKIFRHSSLLIEHQALHAGE 38
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.4 bits (68), Expect = 0.50
Identities = 24/106 (22%), Positives = 37/106 (34%), Gaps = 33/106 (31%)
Query: 111 DIKFKCNY----CEKVYNNPSNLQRHIKTHTDNSLYICEICGKDFGTARYLKRHKDTHNS 166
D FK Y + V NNP NL H FG + KR ++ +++
Sbjct: 1650 DNHFKDTYGFSILDIVINNPVNLTIH------------------FGGEK-GKRIRENYSA 1690
Query: 167 VNTFVCEVCNTGF----KVKKHLTQHYKSHSMFIPPEQFPGLDPTS 208
+ E G K+ K + +H S+ F + L T
Sbjct: 1691 ---MIFETIVDGKLKTEKIFKEINEHSTSY-TFRSEKGL--LSATQ 1730
>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 66
Score = 27.9 bits (61), Expect = 0.53
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 138 DNSLYICEICGKDFGTARYLKRHKDTH 164
+ + C +CGK F A L++H+ H
Sbjct: 10 EAGILPCGLCGKVFTDANRLRQHEAQH 36
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 27.1 bits (59), Expect = 0.53
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 61 CNHCGRAFSDKSNLTVHIRTHTDEK 85
C +C + F K +L H+R HT+EK
Sbjct: 12 CEYCNKVFKFKHSLQAHLRIHTNEK 36
Score = 26.0 bits (56), Expect = 1.5
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 114 FKCNYCEKVYNNPSNLQRHIKTHTD 138
F C YC KV+ +LQ H++ HT+
Sbjct: 10 FTCEYCNKVFKFKHSLQAHLRIHTN 34
Score = 24.4 bits (52), Expect = 5.4
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 165 NSVNTFVCEVCNTGFKVKKHLTQHYKSHS 193
+S F CE CN FK K L H + H+
Sbjct: 5 SSGKIFTCEYCNKVFKFKHSLQAHLRIHT 33
>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: g.37.1.1
Length = 88
Score = 28.3 bits (62), Expect = 0.73
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 58 THQCNHCGRAFSDKSNLTVHIRTHTDE 84
T+QC HC + LT H+ H +E
Sbjct: 25 TYQCKHCDSKLQSTAELTSHLNIHNEE 51
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription;
NMR {Mus musculus} SCOP: g.37.1.1
Length = 35
Score = 26.6 bits (58), Expect = 0.96
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 57 RTHQCNHCGRAFSDKSNLTVHIRTHTD 83
R C C AF+ K+N H++ HTD
Sbjct: 6 RPFVCRICLSAFTTKANCARHLKVHTD 32
Score = 25.9 bits (56), Expect = 1.8
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 24 HTGERPHVCHVCSKSFRNRGKLNVHYK 50
+G+RP VC +C +F + H K
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLK 28
Score = 25.1 bits (54), Expect = 3.1
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 114 FKCNYCEKVYNNPSNLQRHIKTHTD 138
F C C + +N RH+K HTD
Sbjct: 8 FVCRICLSAFTTKANCARHLKVHTD 32
Score = 23.9 bits (51), Expect = 8.4
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 164 HNSVNTFVCEVCNTGFKVKKHLTQHYKSHS 193
+ FVC +C + F K + +H K H+
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKVHT 31
>3eqt_A ATP-dependent RNA helicase DHX58; innate immunity, RIG-I-like
helicases, viral RNA detection, LGP2/dsRNA complex,
ATP-binding, coiled coil; 2.00A {Homo sapiens} PDB:
2w4r_A 2rqa_A
Length = 145
Score = 28.5 bits (63), Expect = 1.2
Identities = 20/104 (19%), Positives = 36/104 (34%), Gaps = 5/104 (4%)
Query: 83 DEKKYMCELCGAEFAQWATLYNHKFTHN---DIKFKCNYCEKVYNNPSNLQRHIKTHTDN 139
+ + +C C + L + TH+ + F Y V +P + + K
Sbjct: 10 EHVQLLCINCMVAVGHGSDLRKVEGTHHVNVNPNFSNYY--NVSRDPVVINKVFKDWKPG 67
Query: 140 SLYICEICGKDFGTARYLKRHKDTHNSVNTFVCEVCNTGFKVKK 183
+ C CG+ +G K K V + + E + KK
Sbjct: 68 GVISCRNCGEVWGLQMIYKSVKLPVLKVRSMLLETPQGRIQAKK 111
>1pg5_B Aspartate carbamoyltransferase regulatory chain; 2.60A {Sulfolobus
acidocaldarius} SCOP: d.58.2.1 g.41.7.1 PDB: 2be9_B*
Length = 168
Score = 28.2 bits (63), Expect = 1.3
Identities = 6/20 (30%), Positives = 10/20 (50%)
Query: 105 HKFTHNDIKFKCNYCEKVYN 124
T +K +C YCE + +
Sbjct: 135 KTLTEKPLKMRCEYCETIID 154
>1ncn_A T lymphocyte activation antigen CD86; IG V, beta strands, immune
system; 2.70A {Homo sapiens} SCOP: b.1.1.1 PDB: 1i85_A
Length = 110
Score = 27.9 bits (62), Expect = 1.3
Identities = 9/55 (16%), Positives = 22/55 (40%), Gaps = 3/55 (5%)
Query: 38 SFRNRGKLNVH-YKRVHERIRTHQCNHCGRAFSDKSNLTVHIR--THTDEKKYMC 89
++++ L ++ E+ + + GR D + T+ + D+ Y C
Sbjct: 32 FWQDQENLVLNEVYLGKEKFDSVHSKYMGRTSFDSDSWTLRLHNLQIKDKGLYQC 86
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA,
metal-binding, transcription; NMR {Mus musculus}
Length = 28
Score = 25.9 bits (56), Expect = 1.4
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 56 IRTHQCNHCGRAFSDKSNLTVHIRTHT 82
+R + C+ CG+ FS K + H R HT
Sbjct: 1 MRPYSCSVCGKRFSLKHQMETHYRVHT 27
Score = 23.6 bits (50), Expect = 8.6
Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Query: 28 RPHVCHVCSKSFRNRGKLNVHYKRVH 53
RP+ C VC K F + ++ HY RVH
Sbjct: 2 RPYSCSVCGKRFSLKHQMETHY-RVH 26
>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 26.3 bits (57), Expect = 1.5
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 114 FKCNYCEKVYNNPSNLQRHIKTHT 137
FKCN CEK ++ L +H + HT
Sbjct: 13 FKCNKCEKTFSCSKYLTQHERIHT 36
Score = 25.9 bits (56), Expect = 1.8
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 57 RTHQCNHCGRAFSDKSNLTVHIRTHT 82
+ +CN C + FS LT H R HT
Sbjct: 11 KCFKCNKCEKTFSCSKYLTQHERIHT 36
Score = 24.4 bits (52), Expect = 6.6
Identities = 8/30 (26%), Positives = 14/30 (46%)
Query: 135 THTDNSLYICEICGKDFGTARYLKRHKDTH 164
+ + C C K F ++YL +H+ H
Sbjct: 6 SGQKEKCFKCNKCEKTFSCSKYLTQHERIH 35
Score = 24.0 bits (51), Expect = 9.7
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 163 THNSVNTFVCEVCNTGFKVKKHLTQHYKSHS 193
+ F C C F K+LTQH + H+
Sbjct: 6 SGQKEKCFKCNKCEKTFSCSKYLTQHERIHT 36
>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI,
protein structure initiative, center for eukaryotic
structural genomics, CESG; NMR {Homo sapiens} SCOP:
g.37.1.4
Length = 124
Score = 27.7 bits (61), Expect = 1.8
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 59 HQCNHCGRAFSDKSNLTVHIRT 80
H+C C R F D +NL H R+
Sbjct: 51 HRCLACARYFIDSTNLKTHFRS 72
Score = 26.2 bits (57), Expect = 5.6
Identities = 5/23 (21%), Positives = 13/23 (56%)
Query: 113 KFKCNYCEKVYNNPSNLQRHIKT 135
+C C + + + +NL+ H ++
Sbjct: 50 LHRCLACARYFIDSTNLKTHFRS 72
>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Mus musculus}
Length = 35
Score = 25.6 bits (55), Expect = 1.9
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 25 TGERPHVCHVCSKSFRNRGKLNVHYKRVHE 54
+G +VC +C K F + +L H + VH
Sbjct: 3 SGSSGYVCALCLKKFVSSIRLRSHIREVHG 32
>2yww_A Aspartate carbamoyltransferase regulatory chain; ATP complex,
structural genomics, NPPSFA; HET: ATP; 2.00A
{Methanocaldococcus jannaschii}
Length = 149
Score = 27.7 bits (62), Expect = 1.9
Identities = 10/23 (43%), Positives = 13/23 (56%), Gaps = 3/23 (13%)
Query: 105 HKF---THNDIKFKCNYCEKVYN 124
KF + N +K +C YCEK N
Sbjct: 122 GKFKIESKNPLKIRCYYCEKFLN 144
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 28.7 bits (63), Expect = 2.0
Identities = 31/237 (13%), Positives = 62/237 (26%), Gaps = 77/237 (32%)
Query: 3 KCPQCGALLKNIWSLREHIMIHTGERPHVCHVCSKSFRNRGKLNVHYKRVHERIRTHQCN 62
C +L+ + L I P+ S + +++ + +++
Sbjct: 191 NCNSPETVLEMLQKLLYQID------PNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYE 244
Query: 63 HC------------GRAFS----------DKSN---LTVHIRTHTDEKKYMCELCGAE-- 95
+C AF+ K L+ TH + L E
Sbjct: 245 NCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVK 304
Query: 96 --FAQWATLYNHKFTHNDIKFKCNYCEKVYNNPSNLQRHIKTHTDNSLYICEICGKDFGT 153
++ D + P +L R + T N + I
Sbjct: 305 SLLLKYL----------DCR------------PQDLPREVLTT--NPRRLSII------- 333
Query: 154 ARYLKRHKDTHNSVNTFVCEVCNTGFKVK-KHLT-----QHYKSHSMF-----IPPE 199
A ++ T ++ C+ T + L + + S+F IP
Sbjct: 334 AESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTI 390
>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 25.6 bits (55), Expect = 2.1
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 170 FVCEVCNTGFKVKKHLTQHYKSHSMFIPP 198
+ C C F ++KHL QH K+H+ P
Sbjct: 13 YECSKCQATFNLRKHLIQHQKTHAAKSGP 41
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human
papillomavirus, HPV E6 protein, de novo protein; NMR
{Synthetic} SCOP: k.12.1.1
Length = 33
Score = 25.3 bits (55), Expect = 2.5
Identities = 8/24 (33%), Positives = 10/24 (41%)
Query: 170 FVCEVCNTGFKVKKHLTQHYKSHS 193
F C C F HL++H H
Sbjct: 3 FACPECPKRFMRSDHLSKHITLHE 26
Score = 25.3 bits (55), Expect = 2.5
Identities = 7/27 (25%), Positives = 11/27 (40%)
Query: 60 QCNHCGRAFSDKSNLTVHIRTHTDEKK 86
C C + F +L+ HI H +
Sbjct: 4 ACPECPKRFMRSDHLSKHITLHELLGE 30
Score = 24.1 bits (52), Expect = 6.1
Identities = 9/26 (34%), Positives = 12/26 (46%)
Query: 113 KFKCNYCEKVYNNPSNLQRHIKTHTD 138
KF C C K + +L +HI H
Sbjct: 2 KFACPECPKRFMRSDHLSKHITLHEL 27
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human
papillomavirus, HPV E6 protein, de novo protein; NMR
{Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Length = 29
Score = 25.2 bits (55), Expect = 2.5
Identities = 9/24 (37%), Positives = 9/24 (37%)
Query: 170 FVCEVCNTGFKVKKHLTQHYKSHS 193
F C C F HLT H H
Sbjct: 3 FACPECPKRFMRSDHLTLHILLHE 26
Score = 24.5 bits (53), Expect = 5.0
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 60 QCNHCGRAFSDKSNLTVHIRTHTDEK 85
C C + F +LT+HI H ++K
Sbjct: 4 ACPECPKRFMRSDHLTLHILLHENKK 29
Score = 24.5 bits (53), Expect = 5.0
Identities = 9/27 (33%), Positives = 12/27 (44%)
Query: 113 KFKCNYCEKVYNNPSNLQRHIKTHTDN 139
KF C C K + +L HI H +
Sbjct: 2 KFACPECPKRFMRSDHLTLHILLHENK 28
>2air_B Aspartate carbamoyltransferase regulatory chain; aspartate
transcarbamylase, alanosine, carbamyl phosphate, T
transferase; HET: AL0; 2.00A {Escherichia coli} SCOP:
d.58.2.1 g.41.7.1 PDB: 1ezz_B 1f1b_B* 1i5o_B* 1q95_G*
1r0b_G* 1r0c_B* 1raa_B* 1rab_B* 1rac_B* 1rad_B* 1rae_B*
1raf_B* 1rag_B* 1rah_B* 1rai_B* 1sku_B 1tth_B* 1tu0_B
1tug_B* 1xjw_B* ...
Length = 153
Score = 27.4 bits (61), Expect = 2.6
Identities = 9/15 (60%), Positives = 11/15 (73%)
Query: 110 NDIKFKCNYCEKVYN 124
NDI KC YCEK ++
Sbjct: 132 NDIALKCKYCEKEFS 146
>2be7_D Aspartate carbamoyltransferase regulatory chain; atcase,
psychrophilic, cold adaptation, alloste holoenzyme;
2.85A {Moritella profunda}
Length = 153
Score = 27.4 bits (61), Expect = 3.0
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 100 ATLYNHKFTHNDIKFKCNYCEKVYN 124
+ ++ K T +I KC YCEK ++
Sbjct: 121 TSSFSIKKTKGNIGLKCKYCEKTFS 145
>4ayb_A DNA-directed RNA polymerase; transferase, multi-subunit,
transcription; 3.20A {Sulfolobus shibatae} PDB: 2wb1_A
2y0s_A 2waq_A 4b1o_A 4b1p_W 2pmz_A 3hkz_A
Length = 880
Score = 27.9 bits (62), Expect = 3.3
Identities = 21/140 (15%), Positives = 39/140 (27%), Gaps = 26/140 (18%)
Query: 79 RTHTDEKKYMCELCGAEFAQ----------WATLYN---HKFTHNDIKFKCNYCEKVYNN 125
R E C CG + + K + +K C C +V +
Sbjct: 48 RLGVIEPGQKCPTCGNTLGNCPGHFGHIELVRPVIHVGFVKHVYEFLKATCRRCGRVKIS 107
Query: 126 PSNLQRHIKTHTDNSLYICEICGKDFGTARYLKRHKDTHNSVNTFVCEVC-NTGFKVKKH 184
++++ + I K + +A ++ VC C FK+K
Sbjct: 108 EDEIEKYSR--------IYNAIKKRWPSAARRLTEYVKKTAMKAQVCPHCGEKQFKIKLE 159
Query: 185 ----LTQHYKSHSMFIPPEQ 200
+ K + P
Sbjct: 160 KPYNFYEERKEGVAKLTPSD 179
>2elu_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} PDB: 2elw_A
Length = 37
Score = 25.1 bits (54), Expect = 3.6
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 112 IKFKCNYCEKVYNNPSNLQRHIKTHTD 138
IK C +C+K Y++ NL +HI+ D
Sbjct: 8 IKQHCRFCKKKYSDVKNLIKHIRDAHD 34
>3ung_C CMR2DHD; ferredoxin fold, nucleotide-binding, polymerase, CMR
complex function; HET: ADP; 2.31A {Pyrococcus furiosus}
PDB: 3ur3_C 4doz_A
Length = 693
Score = 27.7 bits (60), Expect = 3.9
Identities = 8/80 (10%), Positives = 19/80 (23%), Gaps = 2/80 (2%)
Query: 128 NLQRHIKTHTDNSLYICEICGKDFGTARYLKRHK--DTHNSVNTFVCEVCNTGFKVKKHL 185
+ + + C +CG++ + H + +C +C +
Sbjct: 254 VTEERFEKSEQLKGWKCHVCGENLAIFGDMYDHDNLKSLWLDEEPLCPMCLIKRYYPVWI 313
Query: 186 TQHYKSHSMFIPPEQFPGLD 205
F L
Sbjct: 314 RSKTGQKIRFESVVDVALLY 333
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 30
Score = 24.4 bits (53), Expect = 4.8
Identities = 7/27 (25%), Positives = 16/27 (59%)
Query: 28 RPHVCHVCSKSFRNRGKLNVHYKRVHE 54
+ + C +C+++F R L H +++H
Sbjct: 1 KAYACGLCNRAFTRRDLLIRHAQKIHS 27
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain,
pleckst homology domain, C1 domain, guanine-nucleotide
releasing FA metal-binding; 2.73A {Homo sapiens} PDB:
2d86_A
Length = 587
Score = 26.9 bits (59), Expect = 5.4
Identities = 7/55 (12%), Positives = 15/55 (27%), Gaps = 12/55 (21%)
Query: 12 KNIWSLREHIMIHTGERPHVCHVCSKSFRNRGKLNVHYKRVHERIRTHQCNHCGR 66
+N + + + E C C R + ++C+ C
Sbjct: 512 ENATANGHDFQMFSFEETTSCKACQMLLRGTFY------------QGYRCHRCRA 554
>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of
[NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET:
APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB:
3vti_A
Length = 761
Score = 27.0 bits (60), Expect = 6.0
Identities = 8/33 (24%), Positives = 15/33 (45%), Gaps = 6/33 (18%)
Query: 116 CNYCEKVYNNPSNLQRHIKTHTDNSLYICEICG 148
C C + Y++P + + H + + C CG
Sbjct: 164 CEKCSREYHDPHDRRFHAQP---VA---CFDCG 190
>3ttc_A HYPF, transcriptional regulatory protein; Zn finger, nucleotide
binding, hydrogenase maturation factor transferase; HET:
ADP; 1.86A {Escherichia coli} PDB: 3tsp_A* 3tsu_A*
3ttf_A* 3ttd_A 3tsq_A
Length = 657
Score = 27.0 bits (60), Expect = 6.3
Identities = 9/33 (27%), Positives = 14/33 (42%), Gaps = 6/33 (18%)
Query: 116 CNYCEKVYNNPSNLQRHIKTHTDNSLYICEICG 148
C C+K Y +P + + H + C CG
Sbjct: 70 CPACDKEYRDPLDRRFHAQPVA------CPECG 96
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 24.1 bits (51), Expect = 6.4
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 57 RTHQCNHCGRAFSDKSNLTVHIRTHTDEK 85
+ +C+ C A KSNL H+ H+ EK
Sbjct: 8 KPFKCSLCEYATRSKSNLKAHMNRHSTEK 36
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger,
transcription; NMR {Homo sapiens}
Length = 26
Score = 23.9 bits (51), Expect = 6.9
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 85 KKYMCELCGAEFAQWATLYNHKFTHN 110
K Y+CE CG F Q + L NH H+
Sbjct: 1 KPYVCERCGKRFVQSSQLANHIRHHD 26
>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger;
NMR {Homo sapiens} SCOP: g.41.3.1
Length = 62
Score = 24.4 bits (53), Expect = 7.7
Identities = 10/41 (24%), Positives = 16/41 (39%), Gaps = 2/41 (4%)
Query: 79 RTHTDEKKYMCELCGAEFAQWATLYNHKFTHNDIKFKCNYC 119
R T+ + C +C + F N F F+C +C
Sbjct: 7 RDSTNRASFKCPVCSSTFTDLEA--NQLFDPMTGTFRCTFC 45
>3t8j_A Purine nucleosidase, (IUNH-1); nucleoside hydrolase, thermostable
protein, open (alpha,beta structure, rossmann fold,
NH-fold; 1.60A {Sulfolobus solfataricus}
Length = 311
Score = 26.4 bits (59), Expect = 8.2
Identities = 3/14 (21%), Positives = 7/14 (50%)
Query: 137 TDNSLYICEICGKD 150
N+L+ E ++
Sbjct: 44 VKNALWALEQVNRE 57
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding,
metal-binding, phosphoprotein, exchange factor, RAC,
GTPase, membrane domain; 1.85A {Mus musculus} PDB:
3bji_A 1f5x_A
Length = 406
Score = 26.3 bits (58), Expect = 8.2
Identities = 7/57 (12%), Positives = 14/57 (24%), Gaps = 12/57 (21%)
Query: 12 KNIWSLREHIMIHTGERPHVCHVCSKSFRNRGKLNVHYKRVHERIRTHQCNHCGRAF 68
+N + + + E C C R + ++C C
Sbjct: 340 ENATANGHDFQMFSFEETTSCKACQMLLRGTFY------------QGYRCYRCRAPA 384
>3gri_A Dihydroorotase, dhoase; hydrolase, IDP00795, metal-binding,
pyrimidine biosynthesis, structural genomics; 2.00A
{Staphylococcus aureus subsp}
Length = 424
Score = 26.3 bits (59), Expect = 8.4
Identities = 10/35 (28%), Positives = 15/35 (42%), Gaps = 8/35 (22%)
Query: 11 LKNIWSLREHIMI--------HTGERPHVCHVCSK 37
+ I ++ E + I G HVCHV +K
Sbjct: 200 IPGIPNICESVQIARDVLLAEAAGCHYHVCHVSTK 234
>3to7_A Histone acetyltransferase ESA1; MYST family; HET: ALY COA; 1.90A
{Saccharomyces cerevisiae} PDB: 3to6_A* 1fy7_A* 1mja_A*
1mjb_A* 3to9_A* 1mj9_A*
Length = 276
Score = 26.1 bits (57), Expect = 8.6
Identities = 17/112 (15%), Positives = 39/112 (34%), Gaps = 23/112 (20%)
Query: 103 YNHKFTHNDIKFKCNYCEKVYNNPSNLQRHIKTHT-----------DNSLYICEICGKDF 151
Y + T D + ++ + + + +R+ K T D+ + EI G+
Sbjct: 26 YPIELTDEDFIYIDDFTLQYFGSKKQYERYRKKCTLRHPPGNEIYRDDYVSFFEIDGRKQ 85
Query: 152 GT--------ARYLKRHKDTHNSVNTF----VCEVCNTGFKVKKHLTQHYKS 191
T ++ HK + V+ F + G + + ++ +S
Sbjct: 86 RTWCRNLCLLSKLFLDHKTLYYDVDPFLFYCMTRRDELGHHLVGYFSKEKES 137
>2ou2_A Histone acetyltransferase htatip; structural genomics, structural
genomics consortium, SGC; HET: ALY ACO; 2.30A {Homo
sapiens}
Length = 280
Score = 26.1 bits (57), Expect = 9.4
Identities = 26/144 (18%), Positives = 47/144 (32%), Gaps = 30/144 (20%)
Query: 103 YNHKFTHNDIKFKCNYCEKVYNNPSNLQRHIKTHT-----------DNSLYICEICGKDF 151
Y + T + + C +C K + LQRH+ ++ EI G+
Sbjct: 24 YPQELTTLPVLYLCEFCLKYGRSLKCLQRHLTKCDLRHPPGNEIYRKGTISFFEIDGRKN 83
Query: 152 GT--------ARYLKRHKDTHNSVNTF----VCEVCNTGFKVKKHLTQHYKSHSMF---- 195
+ A+ HK + + F + E GF + + ++ +S +
Sbjct: 84 KSYSQNLCLLAKCFLDHKTLYYDTDPFLFYVMTEYDCKGFHIVGYFSKEKESTEDYNVAC 143
Query: 196 ---IPPEQFPGLDPTSCNMSRTLP 216
+PP Q G S L
Sbjct: 144 ILTLPPYQRRGYGKLLIEFSYELS 167
>3mpg_A Dihydroorotase, dhoase; hydrolase; 2.60A {Bacillus anthracis}
Length = 428
Score = 26.3 bits (59), Expect = 9.5
Identities = 11/35 (31%), Positives = 14/35 (40%), Gaps = 8/35 (22%)
Query: 11 LKNIWSLREHIMI--------HTGERPHVCHVCSK 37
L I S+ E + I HVCHV +K
Sbjct: 201 LNGIPSVCESVHIARDILLAEAADCHYHVCHVSTK 235
>3sp4_A Aprataxin-like protein; HIT domain, zinc finger, DNA-binding
protein, DNA deadenylas hydrolase; 1.80A
{Schizosaccharomyces pombe} PDB: 3spd_A* 3spl_A* 3szq_A*
Length = 204
Score = 25.8 bits (56), Expect = 9.9
Identities = 7/28 (25%), Positives = 12/28 (42%), Gaps = 1/28 (3%)
Query: 60 QCNHCGRAFSDK-SNLTVHIRTHTDEKK 86
+C CG F + L H++ D+
Sbjct: 171 KCWRCGETFGRHFTKLKAHLQEEYDDWL 198
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron
transfer, DIIR center, oxidoreductase; 1.40A
{Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1
PDB: 1yv1_A 1yux_A
Length = 202
Score = 25.9 bits (56), Expect = 9.9
Identities = 10/34 (29%), Positives = 11/34 (32%), Gaps = 13/34 (38%)
Query: 2 FKCPQCGALLKNIWSLREHIMIHTGERPHVCHVC 35
CP CG IH GE C +C
Sbjct: 172 HLCPICG-------------YIHKGEDFEKCPIC 192
>1xrt_A Dihydroorotase, dhoase; amidohydrolase, metalloenzyme, pyrimidine;
1.61A {Aquifex aeolicus} SCOP: b.92.1.3 c.1.9.6 PDB:
1xrf_A 3d6n_A*
Length = 467
Score = 26.4 bits (59), Expect = 10.0
Identities = 10/35 (28%), Positives = 13/35 (37%), Gaps = 8/35 (22%)
Query: 11 LKNIWSLREHIMI--------HTGERPHVCHVCSK 37
L + E I I TG H+ HV +K
Sbjct: 247 LSSRAPEAEEIQIARDGILAQRTGGHVHIQHVSTK 281
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.325 0.136 0.458
Gapped
Lambda K H
0.267 0.0662 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,386,011
Number of extensions: 186402
Number of successful extensions: 2790
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2189
Number of HSP's successfully gapped: 913
Length of query: 220
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 130
Effective length of database: 4,188,903
Effective search space: 544557390
Effective search space used: 544557390
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.1 bits)