Query psy11593
Match_columns 400
No_of_seqs 227 out of 1631
Neff 7.7
Searched_HMMs 29240
Date Fri Aug 16 22:39:26 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11593.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11593hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3b5d_A Multidrug transporter E 98.4 1.1E-06 3.8E-11 71.6 9.0 72 159-230 33-105 (110)
2 2i68_A Protein EMRE; transmemb 98.3 6.9E-07 2.4E-11 75.6 5.2 71 160-230 34-105 (137)
3 2i68_A Protein EMRE; transmemb 98.3 1.2E-06 4.1E-11 74.1 6.4 70 318-387 35-105 (137)
4 3b5d_A Multidrug transporter E 98.0 4.2E-05 1.4E-09 62.2 10.4 67 321-387 38-105 (110)
5 3b9w_A Ammonium transporter fa 28.7 4.1E+02 0.014 25.7 12.0 73 195-270 151-230 (407)
6 1vib_A Neurotoxin B-IV; hydrox 24.2 11 0.00039 24.8 -0.7 14 47-60 8-21 (55)
7 1qqr_A Streptokinase domain B; 13.8 85 0.0029 25.6 2.0 20 9-29 61-80 (138)
8 4dxr_B Nesprin-1; beta-sandwic 13.4 54 0.0018 20.1 0.6 12 50-61 7-18 (35)
9 2l2t_A Receptor tyrosine-prote 13.4 1.7E+02 0.0058 19.0 3.0 16 375-390 25-40 (44)
10 3vjj_A P9-1; 3.00A {Rice black 11.7 27 0.00094 32.1 -1.7 35 17-51 34-82 (368)
No 1
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.40 E-value=1.1e-06 Score=71.62 Aligned_cols=72 Identities=13% Similarity=0.182 Sum_probs=65.1
Q ss_pred hHHHHHHHHHHHHHHHHHhhcCChHHHHHH-hhhhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhhheeeccc
Q psy11593 159 VGVPALLYVIQNNLLYISASNLDAATSQVT-YQLKILTTAIFAIILLKKKISKIQWISLVILVVGVALVQLSS 230 (400)
Q Consensus 159 ~~i~a~l~~~~~~l~~~al~~l~~s~~~ll-~~~~pl~tal~s~~~L~erls~~qwlal~l~~~GVviv~~~~ 230 (400)
.....++|.+...+...+++++|.+.+..+ ..+.|+++++++++++||++++.||+|+.+.++|++.+...+
T Consensus 33 ~~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~ 105 (110)
T 3b5d_A 33 SVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 445556788999999999999999999888 799999999999999999999999999999999999886543
No 2
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.27 E-value=6.9e-07 Score=75.63 Aligned_cols=71 Identities=13% Similarity=0.190 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHHHHHhhcCChHHHHHH-hhhhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhhheeeccc
Q psy11593 160 GVPALLYVIQNNLLYISASNLDAATSQVT-YQLKILTTAIFAIILLKKKISKIQWISLVILVVGVALVQLSS 230 (400)
Q Consensus 160 ~i~a~l~~~~~~l~~~al~~l~~s~~~ll-~~~~pl~tal~s~~~L~erls~~qwlal~l~~~GVviv~~~~ 230 (400)
.+..+++.++..++..+++++|++.+..+ ..+.|+++++++++++||++++.||+|+++.++||+++...+
T Consensus 34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~ 105 (137)
T 2i68_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (137)
T ss_dssp CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 45566788999999999999999988888 899999999999999999999999999999999999986543
No 3
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.26 E-value=1.2e-06 Score=74.15 Aligned_cols=70 Identities=13% Similarity=0.200 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHH-HHHHHHHHHHHHHHHhcccccHhHHHHHHHHHHHHHHhccCC
Q psy11593 318 FLVLLNASGGLIVAVVVKYADNILKGFA-TSLAIVLACVFQVYLFAFVITFQFIVGAFFVMCSVFLYSRTP 387 (400)
Q Consensus 318 l~i~~~al~g~~~~~~~k~~~ai~~~~~-~~~~~v~a~lls~llfge~~t~~~liG~~lVi~gv~ly~~~~ 387 (400)
+.++..+++..+..+.+|+.+....... +.+.+++++++|+++|||++|+.+++|+++|++|+++.++..
T Consensus 35 l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~ 105 (137)
T 2i68_A 35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (137)
T ss_dssp HHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 3344445566667788899888777666 899999999999999999999999999999999998877543
No 4
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.00 E-value=4.2e-05 Score=62.16 Aligned_cols=67 Identities=13% Similarity=0.226 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHH-HHHHHHHHHHHHHHHhcccccHhHHHHHHHHHHHHHHhccCC
Q psy11593 321 LLNASGGLIVAVVVKYADNILKGFA-TSLAIVLACVFQVYLFAFVITFQFIVGAFFVMCSVFLYSRTP 387 (400)
Q Consensus 321 ~~~al~g~~~~~~~k~~~ai~~~~~-~~~~~v~a~lls~llfge~~t~~~liG~~lVi~gv~ly~~~~ 387 (400)
+..+++..+....+|+.|....... ..+.++++.++|+++|+|++|..+++|.++|+.|+++.+...
T Consensus 38 ~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~ 105 (110)
T 3b5d_A 38 ICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (110)
T ss_pred HHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 3344455566778899887777665 789999999999999999999999999999999998876543
No 5
>3b9w_A Ammonium transporter family; membrane protein, ammonia transport, rhesus protein, transpo protein; HET: BOG; 1.30A {Nitrosomonas europaea} PDB: 3bhs_A 3b9y_A* 3b9z_A*
Probab=28.69 E-value=4.1e+02 Score=25.74 Aligned_cols=73 Identities=15% Similarity=0.063 Sum_probs=36.0
Q ss_pred HHHHHHHHHhcCCccH-----HHHHHHHHHHHhhhee--ecccccccCCCCcccccchhHHHHHHHHHHHHHHHHHHHHH
Q psy11593 195 TTAIFAIILLKKKISK-----IQWISLVILVVGVALV--QLSSVVEKARPADFVENRMLGFAATILACLLSGLAGVYFEM 267 (400)
Q Consensus 195 ~tal~s~~~L~erls~-----~qwlal~l~~~GVviv--~~~~~~~~~~~~~~~~~~~~G~l~~l~aa~~~al~~V~~ek 267 (400)
+.++...+++++|..+ .+--.+.+.++|..++ .+.+..... ..+.......+=..+|+..+++.....++
T Consensus 151 ~~aLa~a~~LG~R~~~~~~~~~~~hn~~~~~lGt~lLW~GWfGFN~Gl---~~~~~~~~a~~NT~lAaaag~l~~~~~~~ 227 (407)
T 3b9w_A 151 YFGLGVSIALTTAAQRAQPIESDATSDRFSMLGSMVLWLFWPSFATAI---VPFEQMPQTIVNTLLALCGATLATYFLSA 227 (407)
T ss_dssp HHHHHHHHHHCCHHHHTSCCCCCHHHHHHHHHHHHHHHHHHHHHHHTT---SCGGGHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCccccCCCCcCCCCCHHHHHHHHHHHHHHHHhhhhhh---ccchhhHHHHHHhHHHHHHHHHHHHHHHH
Confidence 3455556677776432 1233556666666555 222221110 01112223344456677777777777776
Q ss_pred HHh
Q psy11593 268 ILK 270 (400)
Q Consensus 268 llk 270 (400)
+.+
T Consensus 228 ~~~ 230 (407)
T 3b9w_A 228 LFH 230 (407)
T ss_dssp HHT
T ss_pred HHh
Confidence 533
No 6
>1vib_A Neurotoxin B-IV; hydroxylation; HET: HYP; NMR {Cerebratulus lacteus} SCOP: g.2.2.1
Probab=24.24 E-value=11 Score=24.80 Aligned_cols=14 Identities=29% Similarity=0.543 Sum_probs=10.2
Q ss_pred CCccccccccccCC
Q psy11593 47 PYPKEFYNCKLATN 60 (400)
Q Consensus 47 ~~~~~~~~~~~~~~ 60 (400)
+||-||++|+-.-+
T Consensus 8 ~ypacenncrk~yd 21 (55)
T 1vib_A 8 AYPACENNCRKKYD 21 (55)
T ss_dssp TTTHHHHHHHHHHH
T ss_pred cChhhHhhHHHHhh
Confidence 57999999875433
No 7
>1qqr_A Streptokinase domain B; non-proteolytic, plasminogen activation, fibrinolysis, hydrolase activator; 2.30A {Streptococcus dysgalactiae subsp} SCOP: d.15.5.1 PDB: 1c4p_A
Probab=13.85 E-value=85 Score=25.63 Aligned_cols=20 Identities=25% Similarity=0.571 Sum_probs=15.5
Q ss_pred CCceeeeeeeccccccccccC
Q psy11593 9 TPGFMLVKRINTINIKQANKN 29 (400)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~ 29 (400)
-||+++.+|.+|+ |+.+|..
T Consensus 61 hp~Y~I~er~st~-itHd~~~ 80 (138)
T 1qqr_A 61 HPGYTIYERDSSI-VTHDNDI 80 (138)
T ss_dssp STTEEEEEEEEEE-EEETTCS
T ss_pred CCCcEEEEEeeeE-EEecCcc
Confidence 4999999999987 5555543
No 8
>4dxr_B Nesprin-1; beta-sandwich, LINC complex, structural protein; HET: DMU; 2.32A {Homo sapiens} PDB: 4dxs_B*
Probab=13.44 E-value=54 Score=20.13 Aligned_cols=12 Identities=42% Similarity=0.675 Sum_probs=6.5
Q ss_pred cccccccccCCC
Q psy11593 50 KEFYNCKLATNG 61 (400)
Q Consensus 50 ~~~~~~~~~~~~ 61 (400)
.|++.|.+++|=
T Consensus 7 ee~~sC~~aNNF 18 (35)
T 4dxr_B 7 EEDYSCALSNNF 18 (35)
T ss_dssp ----CCTTCCTG
T ss_pred CCCcchHhhhhH
Confidence 367889998874
No 9
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=13.43 E-value=1.7e+02 Score=19.00 Aligned_cols=16 Identities=31% Similarity=0.310 Sum_probs=8.1
Q ss_pred HHHHHHHHhccCCCCC
Q psy11593 375 FVMCSVFLYSRTPSSK 390 (400)
Q Consensus 375 lVi~gv~ly~~~~~~~ 390 (400)
++..++++|.+..+.+
T Consensus 25 ii~~~~~~~~RRRr~~ 40 (44)
T 2l2t_A 25 IVGLTFAVYVRRKSIK 40 (44)
T ss_dssp HHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHhhhhhhh
Confidence 3444556666554443
No 10
>3vjj_A P9-1; 3.00A {Rice black streaked dwarf virus}
Probab=11.67 E-value=27 Score=32.14 Aligned_cols=35 Identities=26% Similarity=0.534 Sum_probs=13.1
Q ss_pred eeccccccccccCccc-----cCCCcccc---------ccccccCCccc
Q psy11593 17 RINTINIKQANKNDNL-----KSNANSIC---------GSYQFFPYPKE 51 (400)
Q Consensus 17 ~~~~~~~~~~~~~~~~-----~~~~~~~~---------~~~~~~~~~~~ 51 (400)
.|..|.|||++++-|- ++|.|..| |+|++|-|+.+
T Consensus 34 kIeEiti~ndq~~~NtN~s~~~~nen~~stkkiPiLdDGIf~Lln~Li~ 82 (368)
T 3vjj_A 34 KIEELTIKNDQPNRNTNSSTSQSTENRLSTKKIPLLDDGIFELLNYLID 82 (368)
T ss_dssp ECCCCCSS---------------------SCCCCCCEETHHHHHHHHHH
T ss_pred EEEEEEeecCCcCccccchhhccccCcccccCCccccchHHHHHHHHhc
Confidence 4667777776665442 33556666 66777777654
Done!