Query psy11593
Match_columns 400
No_of_seqs 227 out of 1631
Neff 7.7
Searched_HMMs 13730
Date Fri Aug 16 22:39:35 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11593.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/11593hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1wjpa1 g.37.1.1 (A:1-42) Zinc 30.4 3.7 0.00027 24.3 -0.6 13 49-61 13-25 (42)
2 d1pw4a_ f.38.1.1 (A:) Glycerol 29.3 1.6E+02 0.011 24.9 13.5 16 209-224 20-35 (447)
3 d1qqra_ d.15.5.1 (A:) Streptok 29.3 11 0.00082 28.9 1.9 19 9-28 61-79 (138)
4 d1viba_ g.2.2.1 (A:) Neurotoxi 23.5 5.6 0.00041 24.7 -0.7 14 47-60 8-21 (55)
5 d1iwga8 f.35.1.1 (A:513-566,A: 19.2 1.7E+02 0.012 23.3 8.0 27 352-378 96-122 (222)
6 d2r6gf1 e.70.1.1 (F:13-260) Ma 16.5 1.8E+02 0.013 24.0 7.5 65 158-226 4-68 (248)
7 d1pgl22 b.121.4.2 (2:183-370) 9.8 39 0.0028 27.0 0.7 38 9-46 6-60 (188)
8 d1l5ia_ d.89.1.4 (A:) DNA-bind 3.9 89 0.0065 23.0 -0.2 16 39-54 6-21 (118)
9 d1t6la1 d.131.1.2 (A:10-135) U 3.1 1.5E+02 0.011 21.3 0.5 19 37-60 55-73 (126)
10 d4cpai_ g.3.2.1 (I:) Carboxype 2.6 2.5E+02 0.018 15.5 1.0 12 49-60 5-16 (37)
No 1
>d1wjpa1 g.37.1.1 (A:1-42) Zinc finger protein 295, ZNF295 {Human (Homo sapiens) [TaxId: 9606]}
Probab=30.38 E-value=3.7 Score=24.26 Aligned_cols=13 Identities=38% Similarity=0.828 Sum_probs=10.9
Q ss_pred ccccccccccCCC
Q psy11593 49 PKEFYNCKLATNG 61 (400)
Q Consensus 49 ~~~~~~~~~~~~~ 61 (400)
-+|.|||+|-+.+
T Consensus 13 nke~y~crlcnak 25 (42)
T d1wjpa1 13 NKEVYQCRLCNAK 25 (42)
T ss_dssp CCCCCBCTTTCCB
T ss_pred ccceeeeeehhhh
Confidence 3789999998876
No 2
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=29.34 E-value=1.6e+02 Score=24.90 Aligned_cols=16 Identities=19% Similarity=0.573 Sum_probs=8.1
Q ss_pred cHHHHHHHHHHHHhhh
Q psy11593 209 SKIQWISLVILVVGVA 224 (400)
Q Consensus 209 s~~qwlal~l~~~GVv 224 (400)
++.+|.-+.+.++|..
T Consensus 20 ~~~~w~i~~~~~~~~~ 35 (447)
T d1pw4a_ 20 RRLRWQIFLGIFFGYA 35 (447)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHH
Confidence 3445655555555433
No 3
>d1qqra_ d.15.5.1 (A:) Streptokinase {Streptococcus equisimilis [TaxId: 119602]}
Probab=29.32 E-value=11 Score=28.85 Aligned_cols=19 Identities=26% Similarity=0.649 Sum_probs=15.6
Q ss_pred CCceeeeeeecccccccccc
Q psy11593 9 TPGFMLVKRINTINIKQANK 28 (400)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~ 28 (400)
-||++++||+.|+ ++|+|+
T Consensus 61 ~~gY~i~kR~sT~-Vthd~~ 79 (138)
T d1qqra_ 61 HPGYTIYERDSSI-VTHDND 79 (138)
T ss_dssp STTEEEEEEEEEE-EEETTC
T ss_pred CCCcEEEEEeeee-eecccc
Confidence 4899999999996 667663
No 4
>d1viba_ g.2.2.1 (A:) Neurotoxin B-IV {Milky ribbon worm (Cerebratulus lacteus) [TaxId: 6221]}
Probab=23.48 E-value=5.6 Score=24.69 Aligned_cols=14 Identities=29% Similarity=0.543 Sum_probs=10.2
Q ss_pred CCccccccccccCC
Q psy11593 47 PYPKEFYNCKLATN 60 (400)
Q Consensus 47 ~~~~~~~~~~~~~~ 60 (400)
+||-||++|+-.-+
T Consensus 8 ~ypacenncrk~yd 21 (55)
T d1viba_ 8 AYPACENNCRKKYD 21 (55)
T ss_dssp TTTHHHHHHHHHHH
T ss_pred cChhhHhhHHHHhh
Confidence 57999999875433
No 5
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=19.21 E-value=1.7e+02 Score=23.34 Aligned_cols=27 Identities=11% Similarity=0.208 Sum_probs=20.3
Q ss_pred HHHHHHHHHhcccccHhHHHHHHHHHH
Q psy11593 352 LACVFQVYLFAFVITFQFIVGAFFVMC 378 (400)
Q Consensus 352 ~a~lls~llfge~~t~~~liG~~lVi~ 378 (400)
+.++.+..+.|.+++....+|.++.++
T Consensus 96 ~~~~~~l~~~g~~~~~~~~~g~i~l~G 122 (222)
T d1iwga8 96 IGALLAATFRGLTNDVYFQVGLLTTIG 122 (222)
T ss_dssp HHHHHHHHHTTCCBCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCchhhhhcccccchhh
Confidence 344556667899999999888887654
No 6
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=16.47 E-value=1.8e+02 Score=23.96 Aligned_cols=65 Identities=12% Similarity=0.111 Sum_probs=39.6
Q ss_pred hhHHHHHHHHHHHHHHHHHhhcCChHHHHHHhhhhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhhhee
Q psy11593 158 KVGVPALLYVIQNNLLYISASNLDAATSQVTYQLKILTTAIFAIILLKKKISKIQWISLVILVVGVALV 226 (400)
Q Consensus 158 ~~~i~a~l~~~~~~l~~~al~~l~~s~~~ll~~~~pl~tal~s~~~L~erls~~qwlal~l~~~GVviv 226 (400)
++++.|++.++.-.+.......-....+. ...+.+++..++++.+|.-+.+|+-=.+.++.+.++
T Consensus 4 K~~ll~l~~a~~~~~~~~~~~~~~~~~a~----~~~~~~~~~~~vy~s~r~~p~kyi~PG~~~l~~Fvi 68 (248)
T d2r6gf1 4 KWSVLGLLGLLVGYLVVLMYAQGEYLFAI----TTLILSSAGLYIFANRKAYAWRYVYPGMAGMGLFVL 68 (248)
T ss_dssp THHHHHHHHHHHHHTHHHHHGGGCHHHHH----HHHHHHHHHHHHHSSSCCTTHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcchHHHHH----HHHHHHHheEEEEEccCccceehhhhHHHHHHHHHH
Confidence 45666666655544444444443333322 344556667788999999999997665555555444
No 7
>d1pgl22 b.121.4.2 (2:183-370) Comovirus coat proteins (VP37 and VP23) {BPMV (Bean pod mottle virus) [TaxId: 12260]}
Probab=9.76 E-value=39 Score=27.03 Aligned_cols=38 Identities=18% Similarity=0.398 Sum_probs=30.4
Q ss_pred CCceeeeeeeccccccccc-----------------cCccccCCCcccccccccc
Q psy11593 9 TPGFMLVKRINTINIKQAN-----------------KNDNLKSNANSICGSYQFF 46 (400)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~ 46 (400)
.|+|||-|..-++..||-. ++.-+.|=+|+.||-.+++
T Consensus 6 ~p~fml~rwmG~L~FpQG~~~~~~~mpl~iG~~~g~~~~v~mnm~na~c~l~rYm 60 (188)
T d1pgl22 6 QNPFVLNRWMGKLTFPQGTSRSVKRMPLSIGGGAGAKSAILMNMPNAVLSMWRYF 60 (188)
T ss_dssp CSSEEEEEEEEEEEECSBSCCCCEEEESCCTTCEEETTEEECCHHHHHHTTEEEE
T ss_pred CCchhHHHHhhhccCCccchhhheeeeeeccCCcCCCcEEEEeCcHHHHHHHHHh
Confidence 8999999999999999974 3344667789999886654
No 8
>d1l5ia_ d.89.1.4 (A:) DNA-binding domain of REP protein {Geminivirus (Tomato yellow leaf curl virus - sardinia) [TaxId: 123735]}
Probab=3.90 E-value=89 Score=23.01 Aligned_cols=16 Identities=31% Similarity=0.405 Sum_probs=11.5
Q ss_pred ccccccccCCcccccc
Q psy11593 39 ICGSYQFFPYPKEFYN 54 (400)
Q Consensus 39 ~~~~~~~~~~~~~~~~ 54 (400)
+|+-+-|||||.|--.
T Consensus 6 i~aKn~FLTYp~C~l~ 21 (118)
T d1l5ia_ 6 IKAKNYFLTYPKCDLT 21 (118)
T ss_dssp CEEEEEEEEETTCCCC
T ss_pred EeeeeEEEECCCCCCC
Confidence 4555689999988544
No 9
>d1t6la1 d.131.1.2 (A:10-135) UL44 {Human cytomegalovirus, HHV-5 [TaxId: 10359]}
Probab=3.10 E-value=1.5e+02 Score=21.27 Aligned_cols=19 Identities=26% Similarity=0.422 Sum_probs=0.0
Q ss_pred ccccccccccCCccccccccccCC
Q psy11593 37 NSICGSYQFFPYPKEFYNCKLATN 60 (400)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~ 60 (400)
||+| +|.+. +.|+.|+-+|
T Consensus 55 nssC---LyitD--~~F~~KTINN 73 (126)
T d1t6la1 55 NSSC---LYITD--KSFQPKTINN 73 (126)
T ss_dssp CGGG---EEESC--TTCCCEEEES
T ss_pred cceE---EEEec--Cccccccccc
No 10
>d4cpai_ g.3.2.1 (I:) Carboxypeptidase A inhibitor {Potato [TaxId: 4113]}
Probab=2.63 E-value=2.5e+02 Score=15.51 Aligned_cols=12 Identities=25% Similarity=0.313 Sum_probs=0.0
Q ss_pred ccccccccccCC
Q psy11593 49 PKEFYNCKLATN 60 (400)
Q Consensus 49 ~~~~~~~~~~~~ 60 (400)
|+|.-+||++.+
T Consensus 5 pic~kpc~t~dd 16 (37)
T d4cpai_ 5 PICNKPCKTHDD 16 (37)
T ss_dssp TTTTCBCSSSSS
T ss_pred cccCCCcccccC
Done!