RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy11593
         (400 letters)



>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase
           {Alfalfa (Medicago sativa) [TaxId: 3879]}
          Length = 227

 Score = 27.8 bits (61), Expect = 1.9
 Identities = 13/42 (30%), Positives = 17/42 (40%), Gaps = 6/42 (14%)

Query: 300 WDKIFQHGFFYNYTWFIVFLVLLNASGGLIVAVVVKYADNIL 341
           +D IF      NY  +   L+ L   GG+I        DN L
Sbjct: 137 YDFIFVDADKDNYLNYHKRLIDLVKVGGVIG------YDNTL 172


>d1jb0b_ f.29.1.1 (B:) Apoprotein a2, PsaB {Synechococcus elongatus
           [TaxId: 32046]}
          Length = 739

 Score = 27.9 bits (62), Expect = 2.4
 Identities = 17/77 (22%), Positives = 28/77 (36%), Gaps = 12/77 (15%)

Query: 237 PADFVENRMLGFAATILACLLSGLAGVYFEMILKGSDVSIWMRNVQLSLLSLPC----AA 292
           P DF+ +  +  A  +    L  + G         +  S  M + +    + PC      
Sbjct: 520 PGDFLVHHAI--ALGLHTTTLILVKGALD------ARGSKLMPDKKDFGYAFPCDGPGRG 571

Query: 293 CTCFISDWDKIFQHGFF 309
            TC IS WD  +   F+
Sbjct: 572 GTCDISAWDAFYLAMFW 588


>d1qqra_ d.15.5.1 (A:) Streptokinase {Streptococcus equisimilis
          [TaxId: 119602]}
          Length = 138

 Score = 26.8 bits (59), Expect = 2.5
 Identities = 8/45 (17%), Positives = 15/45 (33%), Gaps = 13/45 (28%)

Query: 8  TTPGFMLVKRINTINIKQANKNDNLKSNANSICGSYQFFPYPKEF 52
            PG+ + +R ++I +   N                   P  +EF
Sbjct: 60 NHPGYTIYERDSSI-VTHDNDIFRT------------ILPMDQEF 91


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.327    0.139    0.407 

Gapped
Lambda     K      H
   0.267   0.0578    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,376,115
Number of extensions: 59932
Number of successful extensions: 167
Number of sequences better than 10.0: 1
Number of HSP's gapped: 167
Number of HSP's successfully gapped: 9
Length of query: 400
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 313
Effective length of database: 1,213,086
Effective search space: 379695918
Effective search space used: 379695918
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 54 (24.9 bits)