BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11597
(317 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RJ8|A Chain A, Crystal Structure Of Carbohydrate Oxidase From
Microdochium Nivale
pdb|3RJA|A Chain A, Crystal Structure Of Carbohydrate Oxidase From
Microdochium Nivale In Complex With Substrate Analogue
Length = 473
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 35/72 (48%)
Query: 7 GLESSSHKYGVFQNTCVSYELVLSDASLVECSEEEDRDLFHAIPWSYGTLGFLTAVEIKI 66
G SSH +G+ ++ V +VL+D +VE S E+ DLF I + G + ++
Sbjct: 145 GFGFSSHMHGLAVDSVVGVTVVLADGRIVEASATENADLFWGIKGAGSNFGIVAVWKLAT 204
Query: 67 IPVKKVRARLGC 78
P KV R G
Sbjct: 205 FPAPKVLTRFGV 216
>pdb|2BVF|A Chain A, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 3 (P1)
pdb|2BVF|B Chain B, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 3 (P1)
pdb|2BVG|A Chain A, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 1 (P21)
pdb|2BVG|B Chain B, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 1 (P21)
pdb|2BVG|C Chain C, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 1 (P21)
pdb|2BVG|D Chain D, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 1 (P21)
pdb|2BVH|A Chain A, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 2 (P21)
pdb|2BVH|B Chain B, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 2 (P21)
pdb|2BVH|C Chain C, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 2 (P21)
pdb|2BVH|D Chain D, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 2 (P21)
Length = 459
Score = 36.6 bits (83), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 36/66 (54%)
Query: 1 GIVLGQGLESSSHKYGVFQNTCVSYELVLSDASLVECSEEEDRDLFHAIPWSYGTLGFLT 60
G+ L G+ + KYG+ + + LV + ++ CS++E +LF A+ + G +T
Sbjct: 137 GLALNGGVGFLTPKYGLASDNILGATLVTATGDVIYCSDDERPELFWAVRGAGPNFGVVT 196
Query: 61 AVEIKI 66
VE+++
Sbjct: 197 EVEVQL 202
>pdb|2EXR|A Chain A, X-Ray Structure Of Cytokinin OxidaseDEHYDROGENASE (CKX)
FROM Arabidopsis Thaliana At5g21482
pdb|2Q4W|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
Cytokinin OxidaseDEHYDROGENASE (CKX) FROM ARABIDOPSIS
THALIANA AT5G21482
Length = 524
Score = 36.2 bits (82), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 16/69 (23%), Positives = 32/69 (46%)
Query: 1 GIVLGQGLESSSHKYGVFQNTCVSYELVLSDASLVECSEEEDRDLFHAIPWSYGTLGFLT 60
G + G+ + +YG + ++V + +V CSE E+ +LF ++ G G +T
Sbjct: 170 GTLSNAGVSGQAFRYGPQTSNVTELDVVTGNGDVVTCSEIENSELFFSVLGGLGQFGIIT 229
Query: 61 AVEIKIIPV 69
+ + P
Sbjct: 230 RARVLLQPA 238
>pdb|1W1O|A Chain A, Native Cytokinin Dehydrogenase
pdb|1W1Q|A Chain A, Plant Cytokinin Dehydrogenase In Complex With
Isopentenyladenine
pdb|1W1R|A Chain A, Plant Cytokinin Dehydrogenase In Complex With Trans-zeatin
pdb|1W1S|A Chain A, Plant Cytokinin Dehydrogenase In Complex With
Benzylaminopurine
Length = 534
Score = 35.8 bits (81), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Query: 1 GIVLGQGLESSSHKYGVFQNTCVSYELVLSDASLVECSEEEDRDLFHAIPWSYGTLGFLT 60
G + G+ + ++G + + +++ +V CS++ + DLF A+ G G +T
Sbjct: 177 GTLSNAGISGQAFRHGPQISNVLEMDVITGHGEMVTCSKQLNADLFDAVLGGLGQFGVIT 236
Query: 61 AVEIKIIPVKKVRAR 75
I + P RAR
Sbjct: 237 RARIAVEPA-PARAR 250
>pdb|2QPM|A Chain A, Leu492ala Mutant Of Maize Cytokinin OxidaseDEHYDROGENASE
COMPLEXED With Benzylurea Inhibitor Cpbu
pdb|3KJM|A Chain A, Leu492ala Mutant Of Maize Cytokinin OxidaseDEHYDROGENASE
COMPLEXED With Phenylurea Inhibitor Cppu
Length = 516
Score = 35.8 bits (81), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Query: 1 GIVLGQGLESSSHKYGVFQNTCVSYELVLSDASLVECSEEEDRDLFHAIPWSYGTLGFLT 60
G + G+ + ++G + + +++ +V CS++ + DLF A+ G G +T
Sbjct: 159 GTLSNAGISGQAFRHGPQISNVLEMDVITGHGEMVTCSKQLNADLFDAVLGGLGQFGVIT 218
Query: 61 AVEIKIIPVKKVRAR 75
I + P RAR
Sbjct: 219 RARIAVEPA-PARAR 232
>pdb|3S1F|A Chain A, Asp169glu Mutant Of Maize Cytokinin OxidaseDEHYDROGENASE
COMPLEXED With N6-Isopentenyladenine
Length = 516
Score = 35.8 bits (81), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Query: 1 GIVLGQGLESSSHKYGVFQNTCVSYELVLSDASLVECSEEEDRDLFHAIPWSYGTLGFLT 60
G + G+ + ++G + + +++ +V CS++ + DLF A+ G G +T
Sbjct: 159 GTLSNAGISGQAFRHGPQISNVLEMDVITGHGEMVTCSKQLNADLFDAVLGGLGQFGVIT 218
Query: 61 AVEIKIIPVKKVRAR 75
I + P RAR
Sbjct: 219 RARIAVEPA-PARAR 232
>pdb|2QKN|A Chain A, Crystal Structure Of Maize Cytokinin OxidaseDEHYDROGENASE
COMPLEXED With Phenylurea Inhibitor Cppu
pdb|3BW7|A Chain A, Maize Cytokinin OxidaseDEHYDROGENASE COMPLEXED WITH THE
ALLENIC Cytokinin Analog Ha-1
pdb|3C0P|A Chain A, Maize Cytokinin OxidaseDEHYDROGENASE COMPLEXED WITH THE
ALLENIC Cytokinin Analog Ha-8
pdb|3DQ0|A Chain A, Maize Cytokinin OxidaseDEHYDROGENASE COMPLEXED WITH
N6-(3-Methoxy- Phenyl)adenine
pdb|3S1C|A Chain A, Maize Cytokinin OxidaseDEHYDROGENASE COMPLEXED WITH N6-
Isopentenyladenosine
Length = 516
Score = 35.8 bits (81), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Query: 1 GIVLGQGLESSSHKYGVFQNTCVSYELVLSDASLVECSEEEDRDLFHAIPWSYGTLGFLT 60
G + G+ + ++G + + +++ +V CS++ + DLF A+ G G +T
Sbjct: 159 GTLSNAGISGQAFRHGPQISNVLEMDVITGHGEMVTCSKQLNADLFDAVLGGLGQFGVIT 218
Query: 61 AVEIKIIPVKKVRAR 75
I + P RAR
Sbjct: 219 RARIAVEPA-PARAR 232
>pdb|3S1E|A Chain A, Pro427gln Mutant Of Maize Cytokinin OxidaseDEHYDROGENASE
COMPLEXED With N6-Isopentenyladenine
Length = 516
Score = 35.8 bits (81), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Query: 1 GIVLGQGLESSSHKYGVFQNTCVSYELVLSDASLVECSEEEDRDLFHAIPWSYGTLGFLT 60
G + G+ + ++G + + +++ +V CS++ + DLF A+ G G +T
Sbjct: 159 GTLSNAGISGQAFRHGPQISNVLEMDVITGHGEMVTCSKQLNADLFDAVLGGLGQFGVIT 218
Query: 61 AVEIKIIPVKKVRAR 75
I + P RAR
Sbjct: 219 RARIAVEPA-PARAR 232
>pdb|3S1D|A Chain A, Glu381ser Mutant Of Maize Cytokinin OxidaseDEHYDROGENASE
COMPLEXED With N6-Isopentenyladenosine
Length = 516
Score = 35.8 bits (81), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Query: 1 GIVLGQGLESSSHKYGVFQNTCVSYELVLSDASLVECSEEEDRDLFHAIPWSYGTLGFLT 60
G + G+ + ++G + + +++ +V CS++ + DLF A+ G G +T
Sbjct: 159 GTLSNAGISGQAFRHGPQISNVLEMDVITGHGEMVTCSKQLNADLFDAVLGGLGQFGVIT 218
Query: 61 AVEIKIIPVKKVRAR 75
I + P RAR
Sbjct: 219 RARIAVEPA-PARAR 232
>pdb|3HSU|A Chain A, Functional Roles Of The 6-S-Cysteinyl, 8 Alpha-N1-Histidyl
Fad In Glucooligosaccharide Oxidase From Acremonium
Strictum
Length = 503
Score = 35.0 bits (79), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 32/62 (51%)
Query: 11 SSHKYGVFQNTCVSYELVLSDASLVECSEEEDRDLFHAIPWSYGTLGFLTAVEIKIIPVK 70
++H +G+ + + +VL+DAS+V SE E+ DLF A+ G ++ E
Sbjct: 153 ATHTHGLTLDWLIGATVVLADASIVHVSETENADLFWALRGGGGGFAIVSEFEFNTFEAP 212
Query: 71 KV 72
++
Sbjct: 213 EI 214
>pdb|1ZR6|A Chain A, The Crystal Structure Of An Acremonium Strictum
Glucooligosaccharide Oxidase Reveals A Novel
Flavinylation
pdb|2AXR|A Chain A, Crystal Structure Of Glucooligosaccharide Oxidase From
Acremonium Strictum: A Novel Flavinylation Of
6-S-Cysteinyl, 8alpha-N1-Histidyl Fad
Length = 503
Score = 35.0 bits (79), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 32/62 (51%)
Query: 11 SSHKYGVFQNTCVSYELVLSDASLVECSEEEDRDLFHAIPWSYGTLGFLTAVEIKIIPVK 70
++H +G+ + + +VL+DAS+V SE E+ DLF A+ G ++ E
Sbjct: 153 ATHTHGLTLDWLIGATVVLADASIVHVSETENADLFWALRGGGGGFAIVSEFEFNTFEAP 212
Query: 71 KV 72
++
Sbjct: 213 EI 214
>pdb|2Q5F|A Chain A, Crystal Structure Of Lmnadk1 From Listeria Monocytogenes
pdb|3V8Q|A Chain A, Crystal Structure Of Nad Kinase 1 H223e Mutant From
Listeria Monocytogenes In Complex With
5'-Amino-5'-Deoxyadenosine
pdb|3V8R|A Chain A, Crystal Structure Of Nad Kinase 1 H223e Mutant From
Listeria Monocytogenes In Complex With
5'-Amino-8-Bromo-5'-Deoxyadenosine
Length = 272
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 18/74 (24%)
Query: 150 VPFGNHPLFRYLLGWLMPPKVALLKLTQTQTIKN----------LYDKHHVV-------Q 192
P G + L G LM P + ++LT+ +I N ++ KHHVV +
Sbjct: 156 TPSGTTAYNKSLGGALMHPSIEAMQLTEMASINNRVYRTIGSPLVFPKHHVVSLQPVNDK 215
Query: 193 DYLVPIEELRSCVH 206
D+ + ++EL S +H
Sbjct: 216 DFQISVDEL-SILH 228
>pdb|2J6V|B Chain B, Crystal Structure Of The Dna Repair Enzyme Uv Damage
Endonuclease
Length = 279
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
Query: 105 LGFLTAVEIQIIPVKNIRILHHLHVPILDYYHRFSTSLFWEIQDIVPFGNHPLFRY 160
L LT ++ +N+R L IL + +LF Q ++PF +HPLF Y
Sbjct: 23 LAHLTEERVREKAAENLRDLER----ILRFNADHGFALFRIGQHLIPFASHPLFPY 74
>pdb|2J6V|A Chain A, Crystal Structure Of The Dna Repair Enzyme Uv Damage
Endonuclease
Length = 282
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
Query: 105 LGFLTAVEIQIIPVKNIRILHHLHVPILDYYHRFSTSLFWEIQDIVPFGNHPLFRY 160
L LT ++ +N+R L IL + +LF Q ++PF +HPLF Y
Sbjct: 26 LAHLTEERVREKAAENLRDLER----ILRFNADHGFALFRIGQHLIPFASHPLFPY 77
>pdb|3C0Q|A Chain A, Uvde E175a
Length = 301
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
Query: 105 LGFLTAVEIQIIPVKNIRILHHLHVPILDYYHRFSTSLFWEIQDIVPFGNHPLFRY 160
L LT ++ +N+R L IL + +LF Q ++PF +HPLF Y
Sbjct: 44 LAHLTEERVREKAAENLRDLER----ILRFNADHGFALFRIGQHLIPFASHPLFPY 95
>pdb|3C0S|A Chain A, Uvde 3 Metals
Length = 301
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
Query: 105 LGFLTAVEIQIIPVKNIRILHHLHVPILDYYHRFSTSLFWEIQDIVPFGNHPLFRY 160
L LT ++ +N+R L IL + +LF Q ++PF +HPLF Y
Sbjct: 44 LAHLTEERVREKAAENLRDLER----ILRFNADHGFALFRIGQHLIPFASHPLFPY 95
>pdb|3BZG|A Chain A, Uvde Ph4.4
Length = 301
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
Query: 105 LGFLTAVEIQIIPVKNIRILHHLHVPILDYYHRFSTSLFWEIQDIVPFGNHPLFRY 160
L LT ++ +N+R L IL + +LF Q ++PF +HPLF Y
Sbjct: 44 LAHLTEERVREKAAENLRDLER----ILRFNADHGFALFRIGQHLIPFASHPLFPY 95
>pdb|3PM9|A Chain A, Crystal Structure Of A Putative Dehydrogenase (Rpa1076)
From Rhodopseudomonas Palustris Cga009 At 2.57 A
Resolution
pdb|3PM9|B Chain B, Crystal Structure Of A Putative Dehydrogenase (Rpa1076)
From Rhodopseudomonas Palustris Cga009 At 2.57 A
Resolution
pdb|3PM9|C Chain C, Crystal Structure Of A Putative Dehydrogenase (Rpa1076)
From Rhodopseudomonas Palustris Cga009 At 2.57 A
Resolution
pdb|3PM9|D Chain D, Crystal Structure Of A Putative Dehydrogenase (Rpa1076)
From Rhodopseudomonas Palustris Cga009 At 2.57 A
Resolution
pdb|3PM9|E Chain E, Crystal Structure Of A Putative Dehydrogenase (Rpa1076)
From Rhodopseudomonas Palustris Cga009 At 2.57 A
Resolution
pdb|3PM9|F Chain F, Crystal Structure Of A Putative Dehydrogenase (Rpa1076)
From Rhodopseudomonas Palustris Cga009 At 2.57 A
Resolution
Length = 476
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 38/67 (56%), Gaps = 11/67 (16%)
Query: 10 SSSHKYGVFQNTCVSYELVLSDA---SLVECSEEED-----RDLFHAIPWSYGTLGFLTA 61
+++ YG+ ++ + E+VL+D +L+ ++++ RDLF + GTLG +TA
Sbjct: 163 TAALAYGLARDXALGVEVVLADGRVXNLLSKLKKDNTGYDLRDLFIG---AEGTLGIITA 219
Query: 62 VEIKIIP 68
+K+ P
Sbjct: 220 ATLKLFP 226
>pdb|3BZJ|A Chain A, Uvde K229l
Length = 301
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
Query: 105 LGFLTAVEIQIIPVKNIRILHHLHVPILDYYHRFSTSLFWEIQDIVPFGNHPLFRY 160
L LT ++ +N+R L IL + +LF Q ++PF +HPLF Y
Sbjct: 44 LAHLTEERVREKAAENLRDLER----ILRFNADHGFALFRIGQHLIPFASHPLFPY 95
>pdb|3C0L|A Chain A, Uvde K229r
Length = 301
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
Query: 105 LGFLTAVEIQIIPVKNIRILHHLHVPILDYYHRFSTSLFWEIQDIVPFGNHPLFRY 160
L LT ++ +N+R L IL + +LF Q ++PF +HPLF Y
Sbjct: 44 LAHLTEERVREKAAENLRDLER----ILRFNADHGFALFRIGQHLIPFASHPLFPY 95
>pdb|4AED|C Chain C, Crystal Structure Of Human Enterovirus 71
Length = 242
Score = 28.9 bits (63), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 46/112 (41%), Gaps = 13/112 (11%)
Query: 81 GFPVIYDKEEDRDLFHAIPWSYGTLGFLTAVEIQIIPVKNIRILHHLHVPILDYYHRFST 140
G P+ D+ H I W +G ++V + I + N H + DYY
Sbjct: 139 GGPLPKDRATAMLGTHVI-WDFG---LQSSVTLVIPWISNTHYRAHARDGVFDYYTTGLV 194
Query: 141 SLFWEIQDIVPFGNHPLFRYLLGWLMPPKVALLKLTQTQTIKNLYDKHHVVQ 192
S++++ +VP G P Y+ +AL + T+K D H++Q
Sbjct: 195 SIWYQTNYVVPIG-APNTAYI--------IALAAAQKNFTMKLCKDTSHILQ 237
>pdb|1Z1W|A Chain A, Crystal Structures Of The Tricorn Interacting Facor F3
From Thermoplasma Acidophilum, A Zinc Aminopeptidase In
Three Different Conformations
pdb|1Z5H|A Chain A, Crystal Structures Of The Tricorn Interacting Factor F3
From Thermoplasma Acidophilum
pdb|1Z5H|B Chain B, Crystal Structures Of The Tricorn Interacting Factor F3
From Thermoplasma Acidophilum
Length = 780
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 8/69 (11%)
Query: 157 LFRYLLGWLMPPKVALLKLTQTQTIKNLYDK--HHVVQDYLVPIEELRSCVHYFHDNIQI 214
LF +LL + P+ T Q I+N +D H+V+ + +E LR H F D+ +
Sbjct: 515 LFAFLLSGHIDPE------TYRQRIRNFFDDEDHNVITAIVGQMEYLRMLTHAFDDDARA 568
Query: 215 YPLWICPFL 223
+ FL
Sbjct: 569 FCRSRMQFL 577
>pdb|3Q7J|A Chain A, Engineered Thermoplasma Acidophilum F3 Factor Mimics Human
Aminopeptidase N (Apn) As A Target For Anticancer Drug
Development
pdb|3Q7J|B Chain B, Engineered Thermoplasma Acidophilum F3 Factor Mimics Human
Aminopeptidase N (Apn) As A Target For Anticancer Drug
Development
Length = 780
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 8/69 (11%)
Query: 157 LFRYLLGWLMPPKVALLKLTQTQTIKNLYDK--HHVVQDYLVPIEELRSCVHYFHDNIQI 214
LF +LL + P+ T Q I+N +D H+V+ + +E LR H F D+ +
Sbjct: 515 LFAFLLSGHIDPE------TYRQRIRNFFDDEDHNVITAIVGQMEYLRMLTHAFDDDARA 568
Query: 215 YPLWICPFL 223
+ FL
Sbjct: 569 FCRSRMQFL 577
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.143 0.453
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,462,740
Number of Sequences: 62578
Number of extensions: 450677
Number of successful extensions: 890
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 876
Number of HSP's gapped (non-prelim): 27
length of query: 317
length of database: 14,973,337
effective HSP length: 99
effective length of query: 218
effective length of database: 8,778,115
effective search space: 1913629070
effective search space used: 1913629070
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (24.3 bits)