RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy11597
(317 letters)
>gnl|CDD|223354 COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production
and conversion].
Length = 459
Score = 54.1 bits (130), Expect = 4e-08
Identities = 44/317 (13%), Positives = 91/317 (28%), Gaps = 25/317 (7%)
Query: 1 GIVLGQGLESSSHKYGVFQNTCVSYELVLSDASLVECSEEEDR-----DLFHAIPWSYGT 55
G + S +YG+ ++ + +VL D ++ + + DL S GT
Sbjct: 133 GNIATNAGGLRSLRYGLTRDNVLGLRVVLPDGEILRLGRKLRKDNAGYDLTALFVGSEGT 192
Query: 56 LGFLTAVEIKIIPVKKVRARLGC------EKGFPVIYDKEEDRDLFHAIPWSYGTLGFLT 109
LG +T +K++P+ + +A + L IP + +
Sbjct: 193 LGIITEATLKLLPLPETKATAVAGFPSIEAAARLAVAAIALLEAL-GVIPAALEFMDRPI 251
Query: 110 AVEIQIIPVKNIRILHHLHVPILDYYHRFST--SLFWEIQDIVPFGNHPLFRYLLGWLMP 167
+ + + + + + + +++ + L
Sbjct: 252 KAAEAYLGGGALPLEAPARLLVEVEGSDEAAVDEALEALGELLLEHGLARDLVVAQDLAE 311
Query: 168 PKVALLKLTQTQTIKNLYDKHHVVQDYLVPIEELRSCVHYFHDNIQIYPLWI-CPFLLKD 226
L + +D +VP+E L + + L +
Sbjct: 312 AARLWLARKGALAAAGALGPGVIQEDVVVPLEALPEFLREILALLDKAGLALRVALFGHA 371
Query: 227 LPGLVHPAKAQDGMYLDLGLYGEPKAKDYHSKNTITAL-ESYLGKIRGFQMLGAGVYQSY 285
G +H + D+G E A+ I AL G I G +G +
Sbjct: 372 GDGNLHLN-----ILYDVGDEAEELARAEALNEAIEALAVELGGSISGEHGIGRTKAEFL 426
Query: 286 SEFRQNYDHSLYDRVRA 302
+ +RA
Sbjct: 427 ELEPGE----AWALLRA 439
>gnl|CDD|233525 TIGR01678, FAD_lactone_ox, sugar 1,4-lactone oxidases. This model
represents a family of at least two different sugar 1,4
lactone oxidases, both involved in synthesizing ascorbic
acid or a derivative. These include L-gulonolactone
oxidase (EC 1.1.3.8) from rat and
D-arabinono-1,4-lactone oxidase (EC 1.1.3.37) from
Saccharomyces cerevisiae. Members are proposed to have
the cofactor FAD covalently bound at a site specified by
Prosite motif PS00862; OX2_COVAL_FAD; 1.
Length = 438
Score = 50.3 bits (120), Expect = 5e-07
Identities = 22/66 (33%), Positives = 38/66 (57%)
Query: 3 VLGQGLESSSHKYGVFQNTCVSYELVLSDASLVECSEEEDRDLFHAIPWSYGTLGFLTAV 62
++ G SS K+G+ V+ ++ +D ++ECSEE + D+F A S G LG + V
Sbjct: 115 IISTGTHGSSIKHGILATQVVALTIMTADGEVLECSEERNADVFQAARVSLGCLGIIVTV 174
Query: 63 EIKIIP 68
I+++P
Sbjct: 175 TIQVVP 180
Score = 31.4 bits (71), Expect = 0.58
Identities = 19/71 (26%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Query: 52 SYGTLGFLTAVEIKIIPVKKVRARLGCEKGFPVIYDKEEDRDLFHAIPWSYGTLGFLTAV 111
S GT G ++++ I+ + V + G + +E + D+F A S G LG + V
Sbjct: 117 STGTHG--SSIKHGILATQVVALTIMTADGEVLECSEERNADVFQAARVSLGCLGIIVTV 174
Query: 112 EIQIIPVKNIR 122
IQ++P +++
Sbjct: 175 TIQVVPQFHLQ 185
>gnl|CDD|216574 pfam01565, FAD_binding_4, FAD binding domain. This family consists
of various enzymes that use FAD as a co-factor, most of
the enzymes are similar to oxygen oxidoreductase. One of
the enzymes Vanillyl-alcohol oxidase (VAO) has a solved
structure, the alignment includes the FAD binding site,
called the PP-loop, between residues 99-110. The FAD
molecule is covalently bound in the known structure,
however the residue that links to the FAD is not in the
alignment. VAO catalyzes the oxidation of a wide variety
of substrates, ranging form aromatic amines to
4-alkylphenols. Other members of this family include
D-lactate dehydrogenase, this enzyme catalyzes the
conversion of D-lactate to pyruvate using FAD as a
co-factor; mitomycin radical oxidase, this enzyme
oxidises the reduced form of mitomycins and is involved
in mitomycin resistance. This family includes MurB an
UDP-N-acetylenolpyruvoylglucosamine reductase enzyme
EC:1.1.1.158. This enzyme is involved in the
biosynthesis of peptidoglycan.
Length = 139
Score = 35.3 bits (82), Expect = 0.011
Identities = 12/38 (31%), Positives = 21/38 (55%)
Query: 1 GIVLGQGLESSSHKYGVFQNTCVSYELVLSDASLVECS 38
G + G S +YG+ ++ +S E+VL+D +V S
Sbjct: 102 GAIATNGGGYGSERYGLTRDNVLSLEVVLADGEVVRLS 139
>gnl|CDD|130740 TIGR01679, bact_FAD_ox, FAD-linked oxidoreductase. This model
represents a family of bacterial oxidoreductases with
covalently linked FAD, closely related to two different
eukaryotic oxidases, L-gulonolactone oxidase (EC
1.1.3.8) from rat and D-arabinono-1,4-lactone oxidase
(EC 1.1.3.37) from Saccharomyces cerevisiae.
Length = 419
Score = 36.4 bits (84), Expect = 0.017
Identities = 23/76 (30%), Positives = 43/76 (56%), Gaps = 4/76 (5%)
Query: 4 LGQGLESSSHKYGV-FQN---TCVSYELVLSDASLVECSEEEDRDLFHAIPWSYGTLGFL 59
+G L +++H GV FQ VS LV + +++ SE +D+D++ A S G LG +
Sbjct: 106 IGGALGTATHGTGVRFQALHARIVSLRLVTAGGKVLDLSEGDDQDMYLAARVSLGALGVI 165
Query: 60 TAVEIKIIPVKKVRAR 75
+ V ++ + + ++R R
Sbjct: 166 SQVTLQTVALFRLRRR 181
Score = 31.4 bits (71), Expect = 0.70
Identities = 16/79 (20%), Positives = 30/79 (37%), Gaps = 8/79 (10%)
Query: 86 YDKEEDRDLFHAIPWSYGTLGFLTAVEIQIIPVKNIRILHHLHVPILDYYHRFSTSLFWE 145
+ +D+D++ A S G LG ++ V +Q + + +R P+ R F +
Sbjct: 143 LSEGDDQDMYLAARVSLGALGVISQVTLQTVALFRLR-RRDWRRPLAQTLERLDE--FVD 199
Query: 146 IQD-----IVPFGNHPLFR 159
+ PF L
Sbjct: 200 GHRHFEFYVFPFAGKALTI 218
>gnl|CDD|129482 TIGR00387, glcD, glycolate oxidase, subunit GlcD. This protein,
the glycolate oxidase GlcD subunit, is similar in
sequence to that of several D-lactate dehydrogenases,
including that of E. coli. The glycolate oxidase has
been found to have some D-lactate dehydrogenase activity
[Energy metabolism, Other].
Length = 413
Score = 30.9 bits (70), Expect = 0.79
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 5/60 (8%)
Query: 14 KYGVFQNTCVSYELVLSDASLVEC--SEEEDR---DLFHAIPWSYGTLGFLTAVEIKIIP 68
KYG + + E+V +D ++ +D DL S GTLG +T +K++P
Sbjct: 113 KYGTTVDYVLGLEVVTADGEILRIGGKTAKDVAGYDLTGLFVGSEGTLGIVTEATLKLLP 172
>gnl|CDD|165188 PHA02849, PHA02849, putative transmembrane protein; Provisional.
Length = 82
Score = 27.6 bits (61), Expect = 2.2
Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 94 LFHAIPWSYGTLGFLTAVEIQIIPVKNIRILHHL 127
L + I WSY + FL ++I++I + R HL
Sbjct: 34 LLYLIKWSY-VINFLNDMKIKLINLTTRRSFTHL 66
>gnl|CDD|215242 PLN02441, PLN02441, cytokinin dehydrogenase.
Length = 525
Score = 29.5 bits (67), Expect = 2.7
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Query: 25 YEL--VLSDASLVECSEEEDRDLFHAIPWSYGTLGFLTAVEIKIIPV-KKVR 73
EL V +V CS ++ DLF A+ G G +T I + P K+VR
Sbjct: 195 LELDVVTGKGEVVTCSPTQNSDLFFAVLGGLGQFGIITRARIALEPAPKRVR 246
>gnl|CDD|215258 PLN02465, PLN02465, L-galactono-1,4-lactone dehydrogenase.
Length = 573
Score = 29.4 bits (66), Expect = 2.8
Identities = 15/48 (31%), Positives = 24/48 (50%)
Query: 21 TCVSYELVLSDASLVECSEEEDRDLFHAIPWSYGTLGFLTAVEIKIIP 68
VS +LV +E S+E+D +LF G LG + V ++ +P
Sbjct: 215 QVVSMKLVTPAKGTIELSKEDDPELFRLARCGLGGLGVVAEVTLQCVP 262
>gnl|CDD|130674 TIGR01613, primase_Cterm, phage/plasmid primase, P4 family,
C-terminal domain. This model represents a clade within
a larger family of proteins from viruses of bacteria and
animals. Members of this family are found in phage and
plasmids of bacteria and archaea only. The model
describes a domain of about 300 residues, found
generally toward the protein C-terminus [DNA metabolism,
DNA replication, recombination, and repair, Mobile and
extrachromosomal element functions, Prophage functions].
Length = 304
Score = 29.2 bits (66), Expect = 2.9
Identities = 16/84 (19%), Positives = 36/84 (42%), Gaps = 7/84 (8%)
Query: 223 LLKDLPGLVHPAKAQDGMYLDLGLYGEPKA-----KDYHSKNTITA--LESYLGKIRGFQ 275
+ + +++ A + +G + PKA ++Y +N + A LE G +
Sbjct: 218 YINEKDVILYWAVEGIRLDQRIGDFSIPKAVLEATEEYKEENDVVARFLEECCDDSEGEK 277
Query: 276 MLGAGVYQSYSEFRQNYDHSLYDR 299
+ VY++Y E+ + + + R
Sbjct: 278 VPVRFVYEAYKEWCEEGGYPILSR 301
>gnl|CDD|184171 PRK13598, hisB, imidazoleglycerol-phosphate dehydratase;
Provisional.
Length = 193
Score = 27.8 bits (62), Expect = 5.3
Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 7/49 (14%)
Query: 145 EIQDIVPFGNHPLFRYLLGWLMPPKVALLKLTQTQTIKNLYDKHHVVQD 193
++ VPF NH L L M + T K YD HH+V+D
Sbjct: 29 KVSTPVPFFNHML--ITLLTYMNSTATVSA-----TDKLPYDDHHIVED 70
>gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1,
subfamily C. Domain 2 of NFT1 (New full-length MRP-type
transporter 1). NFT1 belongs to the MRP (multidrug
resistance-associated protein) family of ABC
transporters. Some of the MRP members have five
additional transmembrane segments in their N-terminus,
but the function of these additional membrane-spanning
domains is not clear. The MRP was found in the
multidrug-resisting lung cancer cell in which
p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions such as
glutathione, glucuronate, and sulfate.
Length = 207
Score = 27.8 bits (62), Expect = 5.8
Identities = 15/74 (20%), Positives = 31/74 (41%), Gaps = 12/74 (16%)
Query: 45 LFHAIPWSYGTLGFLTAVEIKIIPVKKVRARLGCEKGFPVI-----------YDKEEDRD 93
LF + G + + ++I IP++ +R+ L P + +D+ D +
Sbjct: 54 LFRFLEAEEGKIE-IDGIDISTIPLEDLRSSLTIIPQDPTLFSGTIRSNLDPFDEYSDEE 112
Query: 94 LFHAIPWSYGTLGF 107
++ A+ S G L
Sbjct: 113 IYGALRVSEGGLNL 126
>gnl|CDD|237279 PRK13030, PRK13030, 2-oxoacid ferredoxin oxidoreductase;
Provisional.
Length = 1159
Score = 28.4 bits (64), Expect = 5.9
Identities = 10/18 (55%), Positives = 13/18 (72%), Gaps = 2/18 (11%)
Query: 231 VHPAKAQDGMYLDLGLYG 248
++PA Q+ YLD GLYG
Sbjct: 170 LNPANVQE--YLDFGLYG 185
>gnl|CDD|236893 PRK11282, glcE, glycolate oxidase FAD binding subunit; Provisional.
Length = 352
Score = 27.9 bits (63), Expect = 7.2
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 52 SYGTLGFLTAVEIKIIPVKKVRARLGCE 79
S GTLG L V +K++P + L E
Sbjct: 152 SLGTLGVLLEVSLKVLPRPRAELTLRLE 179
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.324 0.143 0.453
Gapped
Lambda K H
0.267 0.0783 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 16,797,007
Number of extensions: 1646736
Number of successful extensions: 1212
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1210
Number of HSP's successfully gapped: 21
Length of query: 317
Length of database: 10,937,602
Length adjustment: 97
Effective length of query: 220
Effective length of database: 6,635,264
Effective search space: 1459758080
Effective search space used: 1459758080
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 59 (26.4 bits)