RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy11597
         (317 letters)



>d1w1oa2 d.145.1.1 (A:40-245) Cytokinin dehydrogenase 1 {Maize (Zea
           mays) [TaxId: 4577]}
          Length = 206

 Score = 58.4 bits (140), Expect = 8e-11
 Identities = 14/63 (22%), Positives = 30/63 (47%)

Query: 6   QGLESSSHKYGVFQNTCVSYELVLSDASLVECSEEEDRDLFHAIPWSYGTLGFLTAVEIK 65
            G+   + ++G   +  +  +++     +V CS++ + DLF A+    G  G +T   I 
Sbjct: 143 AGISGQAFRHGPQISNVLEMDVITGHGEMVTCSKQLNADLFDAVLGGLGQFGVITRARIA 202

Query: 66  IIP 68
           + P
Sbjct: 203 VEP 205



 Score = 41.4 bits (96), Expect = 4e-05
 Identities = 12/38 (31%), Positives = 17/38 (44%)

Query: 80  KGFPVIYDKEEDRDLFHAIPWSYGTLGFLTAVEIQIIP 117
            G  V   K+ + DLF A+    G  G +T   I + P
Sbjct: 168 HGEMVTCSKQLNADLFDAVLGGLGQFGVITRARIAVEP 205


>d2i0ka2 d.145.1.1 (A:58-273) Cholesterol oxidase {Brevibacterium
           sterolicum [TaxId: 1702]}
          Length = 216

 Score = 55.0 bits (131), Expect = 1e-09
 Identities = 11/65 (16%), Positives = 19/65 (29%)

Query: 4   LGQGLESSSHKYGVFQNTCVSYELVLSDASLVECSEEEDRDLFHAIPWSYGTLGFLTAVE 63
                    H YG   N       V+ + +       +  D       +     FLT+V 
Sbjct: 151 AVGQTTLPGHTYGSLSNLVTELTAVVWNGTTYALETYQRNDPRITPLLTNLGRCFLTSVT 210

Query: 64  IKIIP 68
           ++  P
Sbjct: 211 MQAGP 215


>d1e8ga2 d.145.1.1 (A:6-273) Vanillyl-alcohol oxidase {Fungus
           (Penicillium simplicissimum) [TaxId: 69488]}
          Length = 268

 Score = 29.7 bits (65), Expect = 0.41
 Identities = 12/87 (13%), Positives = 21/87 (24%), Gaps = 28/87 (32%)

Query: 10  SSSHKYGVFQNTCVSYELVLSDASLVECSEEEDRDLFHAIPW------------------ 51
                YG         E+VL++  L+        D                         
Sbjct: 180 VGYTPYGDHWMMHSGMEVVLANGELLRTGMGALPDPKRPETMGLKPEDQPWSKIAHLFPY 239

Query: 52  ----------SYGTLGFLTAVEIKIIP 68
                     S   +G +T + I ++P
Sbjct: 240 GFGPYIDGLFSQSNMGIVTKIGIWLMP 266


>d1wvfa2 d.145.1.1 (A:7-242) Flavoprotein subunit of p-cresol
           methylhydroxylase {Pseudomonas putida [TaxId: 303]}
          Length = 236

 Score = 27.0 bits (58), Expect = 2.8
 Identities = 3/17 (17%), Positives = 7/17 (41%)

Query: 52  SYGTLGFLTAVEIKIIP 68
           +    G  T +   ++P
Sbjct: 218 TQANYGICTKMGFWLMP 234



 Score = 25.5 bits (54), Expect = 8.3
 Identities = 3/17 (17%), Positives = 7/17 (41%)

Query: 101 SYGTLGFLTAVEIQIIP 117
           +    G  T +   ++P
Sbjct: 218 TQANYGICTKMGFWLMP 234


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.324    0.143    0.453 

Gapped
Lambda     K      H
   0.267   0.0644    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,288,051
Number of extensions: 63669
Number of successful extensions: 145
Number of sequences better than 10.0: 1
Number of HSP's gapped: 145
Number of HSP's successfully gapped: 10
Length of query: 317
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 232
Effective length of database: 1,240,546
Effective search space: 287806672
Effective search space used: 287806672
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (24.4 bits)