BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy11598
         (457 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q8EE77|RNFG_SHEON Electron transport complex protein RnfG OS=Shewanella oneidensis
           (strain MR-1) GN=rnfG PE=3 SV=1
          Length = 212

 Score = 33.5 bits (75), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 37/146 (25%), Positives = 62/146 (42%), Gaps = 16/146 (10%)

Query: 144 DKLRINIRSEKYPLNIRLRAEAMDDYKLEVRCVIKQQKEE-------PQWLLHQPRYPLN 196
           DK+++  + E   +  +L  E + D +L  +C + Q KE        P ++      P+ 
Sbjct: 32  DKIKLQQQKELMGILHQLIPEEIHDNELTAQCTLLQNKEALGTEDAMPAYIATAAGKPVA 91

Query: 197 IRLRAEAMDDYKLEVRCV--IKQQKE--EPQWLLHQPKVTMLISGKKDEELPSEINNKYL 252
           I + A A D Y   ++ +  I  Q E    + L HQ    +   G K E   S+   K++
Sbjct: 92  IAMEAIAPDGYNGNIKLIVGINTQGEVLGVRTLAHQETPGL---GDKIELRKSDWVTKFV 148

Query: 253 E--FKNENKNKILCYTDGSKNDNFTG 276
               K+E+  +     DG   D FTG
Sbjct: 149 GKVLKSEDDKQWQVQKDGGDFDQFTG 174


>sp|O94806|KPCD3_HUMAN Serine/threonine-protein kinase D3 OS=Homo sapiens GN=PRKD3 PE=1
           SV=1
          Length = 890

 Score = 32.3 bits (72), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 13/41 (31%), Positives = 24/41 (58%), Gaps = 4/41 (9%)

Query: 375 SNRNIRQEEVVLCRLRIGHCLATHKHLLERKDPPACEFCRQ 415
           S R I  E++V+CR+++ H  A H +      P  C++C++
Sbjct: 254 SGRPIWMEKMVMCRVKVPHTFAVHSY----TRPTICQYCKR 290


>sp|Q8K1Y2|KPCD3_MOUSE Serine/threonine-protein kinase D3 OS=Mus musculus GN=Prkd3 PE=1
           SV=1
          Length = 889

 Score = 32.3 bits (72), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 13/41 (31%), Positives = 24/41 (58%), Gaps = 4/41 (9%)

Query: 375 SNRNIRQEEVVLCRLRIGHCLATHKHLLERKDPPACEFCRQ 415
           S R I  E++V+CR+++ H  A H +      P  C++C++
Sbjct: 254 SGRPIWMEKMVMCRVKVPHTFAVHSY----GRPTICQYCKR 290


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.324    0.136    0.427 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 166,980,416
Number of Sequences: 539616
Number of extensions: 6907066
Number of successful extensions: 22067
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 22063
Number of HSP's gapped (non-prelim): 13
length of query: 457
length of database: 191,569,459
effective HSP length: 121
effective length of query: 336
effective length of database: 126,275,923
effective search space: 42428710128
effective search space used: 42428710128
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 63 (28.9 bits)