Query psy11598
Match_columns 457
No_of_seqs 237 out of 562
Neff 6.6
Searched_HMMs 29240
Date Fri Aug 16 22:45:02 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11598.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11598hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qkb_A Ribonuclease H1, HS-RNA 99.5 2.7E-14 9.3E-19 128.4 9.1 99 259-362 5-140 (154)
2 3h08_A RNH (ribonuclease H); R 99.4 7.6E-14 2.6E-18 124.2 5.3 95 260-362 3-133 (146)
3 2kq2_A Ribonuclease H-related 99.4 7.8E-14 2.7E-18 124.8 3.6 98 259-362 4-126 (147)
4 1jl1_A Ribonuclease HI; RNAse 99.4 2.2E-13 7.4E-18 122.8 5.8 95 260-362 3-132 (155)
5 2e4l_A Ribonuclease HI, RNAse 99.4 2.5E-13 8.7E-18 122.8 5.6 95 260-362 5-134 (158)
6 1ril_A Ribonuclease H; hydrola 99.4 2.1E-13 7.1E-18 124.5 3.9 95 260-362 7-137 (166)
7 3qio_A GAG-POL polyprotein; RN 99.4 9E-13 3.1E-17 118.4 7.6 94 259-362 10-136 (150)
8 3p1g_A Xenotropic murine leuke 99.3 2.2E-12 7.4E-17 117.7 8.3 95 260-362 22-145 (165)
9 3hst_B Protein RV2228C/MT2287; 99.2 3.1E-11 1E-15 105.8 8.0 94 261-362 3-122 (141)
10 3u3g_D Ribonuclease H, RNAse H 99.2 4.3E-11 1.5E-15 104.4 8.3 95 260-362 2-126 (140)
11 2ehg_A Ribonuclease HI; RNAse 99.2 7E-11 2.4E-15 105.1 8.5 94 262-362 2-123 (149)
12 2zd1_A Reverse transcriptase/r 99.1 3.8E-11 1.3E-15 129.0 8.0 95 259-363 437-550 (557)
13 2lsn_A Reverse transcriptase; 99.1 1.1E-10 3.6E-15 106.5 8.4 97 260-362 6-152 (165)
14 1mu2_A HIV-2 RT; HIV-2 reverse 99.1 8.4E-11 2.9E-15 126.2 8.5 95 259-363 434-547 (555)
15 1zbf_A Ribonuclease H-related 98.3 7.8E-07 2.7E-11 78.9 5.8 76 259-341 9-90 (142)
16 4htu_A Ribonuclease H, RNAse H 98.3 6.3E-07 2.1E-11 78.6 4.9 75 259-340 3-83 (134)
17 1rw3_A POL polyprotein; RNA an 85.5 0.22 7.4E-06 51.5 1.0 74 259-340 344-428 (455)
18 2zd1_B P51 RT; P51/P66, hetero 55.1 20 0.00069 36.5 6.8 79 259-340 322-405 (428)
No 1
>2qkb_A Ribonuclease H1, HS-RNAse HC, RNAse H1; RNA/DNA hybrid; 2.40A {Homo sapiens} PDB: 2qk9_A 2qkk_A*
Probab=99.51 E-value=2.7e-14 Score=128.40 Aligned_cols=99 Identities=15% Similarity=0.124 Sum_probs=76.7
Q ss_pred CCceEEEecCCCCCCc-----eeeEEEeCCcc---hhhccCcccchhHHHHHHHHHHHHHHHHhhhccCCcceEEEEecc
Q psy11598 259 KNKILCYTDGSKNDNF-----TGGAYILNETI---EQFQLNQIASIYTAELMAIDLCLNAILTYVQNNFCFKDFVICSDS 330 (457)
Q Consensus 259 ~~~i~IyTDGSk~~~~-----vG~a~v~~~~~---~~~~L~~~~svy~AEl~AI~~AL~~~~~~~~~~~~~~~i~I~sDS 330 (457)
.+.+.||||||...++ .|+|+|..+.. ....++..++++.||+.|+..||+.+.+. .. .++.|+|||
T Consensus 5 ~~~~~iytDGs~~~n~~~~~~aG~Gvv~~~~~~~~~~~~l~~~~tn~~aEl~A~~~aL~~~~~~--~~---~~v~i~tDS 79 (154)
T 2qkb_A 5 GDFVVVYTDGCCSSNGRRRPRAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKAIEQAKTQ--NI---NKLVLYTNS 79 (154)
T ss_dssp TTEEEEEEEEEEETTTSSSCEEEEEEECSTTCTTCEEEECCSSCCHHHHHHHHHHHHHHHHHHT--TC---CEEEEEESC
T ss_pred CCeEEEEEccCcCCCCCCCCcEEEEEEEECCCceeEEeecCCCCchHHHHHHHHHHHHHHHHhC--CC---ceEEEEECc
Confidence 4678999999987543 68888874321 23345557899999999999999999764 33 789999999
Q ss_pred HHHHHHhhccC---------CCCc------------------cceEEEeeccc--ccchhh
Q psy11598 331 KSSLQALKFNL---------NDSF------------------KRWEEIWTQNA--VLGRQL 362 (457)
Q Consensus 331 ~sal~ai~~~~---------~~s~------------------q~i~l~WvPgH--I~GNE~ 362 (457)
+.+++.|.+.. ..++ ..|.|.||||| ++|||.
T Consensus 80 ~~vi~~i~~~~~~w~~~~w~~~~~~~~~n~~l~~~i~~l~~~~~v~~~~V~~H~g~~~N~~ 140 (154)
T 2qkb_A 80 MFTINGITNWVQGWKKNGWKTSAGKEVINKEDFVALERLTQGMDIQWMHVPGHSGFIGNEE 140 (154)
T ss_dssp HHHHHHHHTHHHHHHTTTSBCTTSSBCTTHHHHHHHHHHHTTCEEEEEECCTTSSCHHHHH
T ss_pred HHHHhhhhhhHHHHHhccccccCCCccccHHHHHHHHHHHcCCceEEEEccCCCCCHhHHH
Confidence 99999998731 1111 17999999999 999997
No 2
>3h08_A RNH (ribonuclease H); RNAse H, 3D-structure, endonuclease, hydrolase, magnesium, metal-binding; 1.60A {Chlorobaculum tepidum}
Probab=99.43 E-value=7.6e-14 Score=124.23 Aligned_cols=95 Identities=20% Similarity=0.058 Sum_probs=70.4
Q ss_pred CceEEEecCCCCCCc--eeeEEEeC--Ccc--hhhccCcccchhHHHHHHHHHHHHHHHHhhhccCCcceEEEEeccHHH
Q psy11598 260 NKILCYTDGSKNDNF--TGGAYILN--ETI--EQFQLNQIASIYTAELMAIDLCLNAILTYVQNNFCFKDFVICSDSKSS 333 (457)
Q Consensus 260 ~~i~IyTDGSk~~~~--vG~a~v~~--~~~--~~~~L~~~~svy~AEl~AI~~AL~~~~~~~~~~~~~~~i~I~sDS~sa 333 (457)
+.+.||||||...++ .|+|+|.. +.. ....+ ..+++..||+.|+..||+.+.+ . .++.|+|||+.+
T Consensus 3 ~~i~iytDGs~~~n~g~~g~G~v~~~~~~~~~~~~~~-~~~Tnn~aEl~A~~~AL~~~~~----~---~~v~I~tDS~~v 74 (146)
T 3h08_A 3 KTITIYTDGAASGNPGKGGWGALLMYGSSRKEISGYD-PATTNNRMELMAAIKGLEALKE----P---ARVQLYSDSAYL 74 (146)
T ss_dssp CEEEEEEEEEESSTTEEEEEEEEEEETTEEEEEEEEE-EEECHHHHHHHHHHHHHHTCSS----C---CEEEEEESCHHH
T ss_pred ceEEEEEecCCCCCCCceEEEEEEEECCeeEEeecCC-CCCcHHHHHHHHHHHHHHhcCc----c---CcEEEEeChHHH
Confidence 468999999987653 68887762 221 11222 3688999999999999999754 2 789999999999
Q ss_pred HHHhhccC----------CCCc------------------cceEEEeeccc--ccchhh
Q psy11598 334 LQALKFNL----------NDSF------------------KRWEEIWTQNA--VLGRQL 362 (457)
Q Consensus 334 l~ai~~~~----------~~s~------------------q~i~l~WvPgH--I~GNE~ 362 (457)
+..|.+.. ..++ ..|+|.||||| ++|||.
T Consensus 75 i~~i~~~w~~~W~~~~w~~~~~~~v~n~~l~~~~~~~~~~~~v~~~~V~gH~g~~~N~~ 133 (146)
T 3h08_A 75 VNAMNEGWLKRWVKNGWKTAAKKPVENIDLWQEILKLTTLHRVTFHKVKGHSDNPYNSR 133 (146)
T ss_dssp HHHHHSSHHHHHHHTTCC----CCCTTHHHHHHHHHHHHHSEEEEEECCC-CCSHHHHH
T ss_pred HHHHHHHHHHHHHHCCCccCCCCCcCCHHHHHHHHHHHhhCceEEEEcCCcCCcHhHHH
Confidence 99998721 0111 17999999999 999997
No 3
>2kq2_A Ribonuclease H-related protein; PSI, NESG, protein structure, APO enzyme, structural genomics, protein structure initiative; NMR {Desulfitobacterium hafniense dcb-2} PDB: 2kw4_A
Probab=99.40 E-value=7.8e-14 Score=124.75 Aligned_cols=98 Identities=12% Similarity=-0.042 Sum_probs=73.5
Q ss_pred CCceEEEecCCCCCCceeeEEEeC--Ccc--hhh-cc--Cc--ccchhHHHHHHHHHHHHHHHHhhhccCCcceEEEEec
Q psy11598 259 KNKILCYTDGSKNDNFTGGAYILN--ETI--EQF-QL--NQ--IASIYTAELMAIDLCLNAILTYVQNNFCFKDFVICSD 329 (457)
Q Consensus 259 ~~~i~IyTDGSk~~~~vG~a~v~~--~~~--~~~-~L--~~--~~svy~AEl~AI~~AL~~~~~~~~~~~~~~~i~I~sD 329 (457)
++.+.||||||...+..|+|+|.. +.. ... .+ +. .++++.||++|+..||+++.+. . .++.|+||
T Consensus 4 ~~~i~iytDGs~~~g~~G~G~vi~~~g~~~~~~~~~~~~~~~~~~tNn~aEl~A~~~AL~~a~~~---~---~~v~I~tD 77 (147)
T 2kq2_A 4 RTEYDVYTDGSYVNGQYAWAYAFVKDGKVHYEDADVGKNPAAATMRNVAGEIAAALYAVKKASQL---G---VKIRILHD 77 (147)
T ss_dssp TSCCEEECCCCCBTTBCEEEEEEEETTEEEEEEEEECCCGGGGGTCTTHHHHHHHHHHHHHHHHH---T---CCCCBSSC
T ss_pred CCeEEEEECCCCCCCCcEEEEEEEECCEEEEEEeccccccccccccHHHHHHHHHHHHHHHHHHC---C---CeEEEEEC
Confidence 567899999999986688888872 221 112 22 22 3689999999999999998764 3 37999999
Q ss_pred cHHHHHHhhccCCCCc--------------cceEEEeeccc--ccchhh
Q psy11598 330 SKSSLQALKFNLNDSF--------------KRWEEIWTQNA--VLGRQL 362 (457)
Q Consensus 330 S~sal~ai~~~~~~s~--------------q~i~l~WvPgH--I~GNE~ 362 (457)
|+.+..-+.+....+. ..|.|.||||| ++|||.
T Consensus 78 S~~i~~w~~~~w~~~~~~~~~~~~l~~~l~~~v~~~wV~gH~g~~~Ne~ 126 (147)
T 2kq2_A 78 YAGIAFWATGEWKAKNEFTQAYAKLMNQYRGIYSFEKVKAHSGNEFNDY 126 (147)
T ss_dssp CSTHHHHTTSSSSCCHHHHHHHHCGGGGGSTTCCBCCCCCCCCCHHHHH
T ss_pred cHHHHHHHhCCCccCCcchHHHHHHHHHhcCCeeEEEecCcCCCcchHH
Confidence 9987776655433222 17999999999 999997
No 4
>1jl1_A Ribonuclease HI; RNAse HI, protein stability, thermostability, hydrogen exchange, cooperativity, hydrolase; 1.30A {Escherichia coli} SCOP: c.55.3.1 PDB: 1f21_A 1jxb_A 1g15_A 1rch_A 1rdd_A 1rnh_A* 2rn2_A 1rda_A 1law_A 1rdb_A 1lav_A 3aa4_A 1rbu_A 1gob_A 1rdc_A 1kvc_A 3aa3_A 3aa2_A 3aa5_X 1rbv_A ...
Probab=99.39 E-value=2.2e-13 Score=122.83 Aligned_cols=95 Identities=18% Similarity=0.158 Sum_probs=71.6
Q ss_pred CceEEEecCCCCCC-c-eeeEEEeC--Ccc--hhhccCcccchhHHHHHHHHHHHHHHHHhhhccCCcceEEEEeccHHH
Q psy11598 260 NKILCYTDGSKNDN-F-TGGAYILN--ETI--EQFQLNQIASIYTAELMAIDLCLNAILTYVQNNFCFKDFVICSDSKSS 333 (457)
Q Consensus 260 ~~i~IyTDGSk~~~-~-vG~a~v~~--~~~--~~~~L~~~~svy~AEl~AI~~AL~~~~~~~~~~~~~~~i~I~sDS~sa 333 (457)
..+.||||||...+ + .|+|+|.. +.. ....+ ..++++.||+.|+..||+.+.+ . .++.|+|||+.+
T Consensus 3 ~~~~iytDGs~~~n~~~~G~G~v~~~~~~~~~~~~~~-~~~tn~~aEl~A~~~aL~~~~~----~---~~v~I~tDS~~v 74 (155)
T 1jl1_A 3 KQVEIFTAGSALGNPGPGGYGAILRYRGREKTFSAGY-TRTTNNRMELMAAIVALEALKE----H---AEVILSTDSQYV 74 (155)
T ss_dssp CCEEEEEEEEESSTTEEEEEEEEEEETTEEEEEEEEE-EEECHHHHHHHHHHHHHHTCCS----C---CEEEEEECCHHH
T ss_pred ceEEEEEccccCCCCCceEEEEEEEECCeEEEEecCC-CCCcHHHHHHHHHHHHHHHhCc----C---CcEEEEeCHHHH
Confidence 35889999999864 3 68888773 221 11222 4678999999999999998754 2 679999999999
Q ss_pred HHHhhc--------cC-CCCc------------------cceEEEeeccc--ccchhh
Q psy11598 334 LQALKF--------NL-NDSF------------------KRWEEIWTQNA--VLGRQL 362 (457)
Q Consensus 334 l~ai~~--------~~-~~s~------------------q~i~l~WvPgH--I~GNE~ 362 (457)
++.|.. .. ..++ ..|.|.||||| ++|||.
T Consensus 75 i~~i~~w~~~W~~n~~~~~~g~~v~n~~l~~~i~~l~~~~~v~~~wV~gH~g~~~Ne~ 132 (155)
T 1jl1_A 75 RQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWVKGHAGHPENER 132 (155)
T ss_dssp HHHHHTTHHHHHHTTTBCTTSCBCTTHHHHHHHHHHTTTCEEEEEECCSSTTCHHHHH
T ss_pred HHHHHHHHHHHhhcccccccCCccCCHHHHHHHHHHHccCceEEEEcCCCCCCHHHHH
Confidence 999986 11 1111 17999999999 999997
No 5
>2e4l_A Ribonuclease HI, RNAse HI; hydrolase, endoribonuclease; 2.00A {Shewanella oneidensis} PDB: 2zqb_A
Probab=99.38 E-value=2.5e-13 Score=122.80 Aligned_cols=95 Identities=19% Similarity=0.180 Sum_probs=71.4
Q ss_pred CceEEEecCCCCCC-c-eeeEEEeC--Ccc--hhhccCcccchhHHHHHHHHHHHHHHHHhhhccCCcceEEEEeccHHH
Q psy11598 260 NKILCYTDGSKNDN-F-TGGAYILN--ETI--EQFQLNQIASIYTAELMAIDLCLNAILTYVQNNFCFKDFVICSDSKSS 333 (457)
Q Consensus 260 ~~i~IyTDGSk~~~-~-vG~a~v~~--~~~--~~~~L~~~~svy~AEl~AI~~AL~~~~~~~~~~~~~~~i~I~sDS~sa 333 (457)
..+.||||||...+ + .|+|+|.. +.. ....+ ..+++..||+.|+..||+.+.+ . .++.|+|||+.+
T Consensus 5 ~~i~iytDGs~~~n~g~~G~G~v~~~~~~~~~~~~~~-~~~tn~~aEl~A~~~AL~~~~~----~---~~v~I~tDS~~v 76 (158)
T 2e4l_A 5 KLIHIFTDGSCLGNPGPGGYGIVMNYKGHTKEMSDGF-SLTTNNRMELLAPIVALEALKE----P---CKIILTSDSQYM 76 (158)
T ss_dssp CEEEEEEEEEESSSSEEEEEEEEEEETTEEEEEEEEE-EEECHHHHHHHHHHHHHHTCSS----C---CEEEEEECCHHH
T ss_pred CeEEEEEcccccCCCCcEEEEEEEEECCEEEEEecCc-CCCccHHHHHHHHHHHHHHhcc----C---CeEEEEeCHHHH
Confidence 46899999999854 3 68888773 221 11222 3578999999999999998642 2 689999999999
Q ss_pred HHHhhc--------cC-CCCc------------------cceEEEeeccc--ccchhh
Q psy11598 334 LQALKF--------NL-NDSF------------------KRWEEIWTQNA--VLGRQL 362 (457)
Q Consensus 334 l~ai~~--------~~-~~s~------------------q~i~l~WvPgH--I~GNE~ 362 (457)
++.|.. .. ...+ ..|.|.||||| ++|||.
T Consensus 77 i~~i~~w~~~W~~n~~~~~~g~~v~n~~l~~~i~~l~~~~~v~~~wV~gH~g~~~Ne~ 134 (158)
T 2e4l_A 77 RQGIMTWIHGWKKKGWMTSNRTPVKNVDLWKRLDKAAQLHQIDWRWVKGHAGHAENER 134 (158)
T ss_dssp HHHHHTHHHHHHHTTTBCTTSSBCTTHHHHHHHHHHHTTSEEEEEECCTTCCCHHHHH
T ss_pred HHHHHHHHHHHHHccccccCCCcccCHHHHHHHHHHHccCcEEEEEccCCCCchhHHH
Confidence 999987 22 1111 17999999999 999997
No 6
>1ril_A Ribonuclease H; hydrolase(endoribonuclease); 2.80A {Thermus thermophilus} SCOP: c.55.3.1 PDB: 2rpi_A
Probab=99.36 E-value=2.1e-13 Score=124.45 Aligned_cols=95 Identities=17% Similarity=0.013 Sum_probs=71.8
Q ss_pred CceEEEecCCCCCC-c-eeeEEEeCC--cch--hhccCcccchhHHHHHHHHHHHHHHHHhhhccCCcceEEEEeccHHH
Q psy11598 260 NKILCYTDGSKNDN-F-TGGAYILNE--TIE--QFQLNQIASIYTAELMAIDLCLNAILTYVQNNFCFKDFVICSDSKSS 333 (457)
Q Consensus 260 ~~i~IyTDGSk~~~-~-vG~a~v~~~--~~~--~~~L~~~~svy~AEl~AI~~AL~~~~~~~~~~~~~~~i~I~sDS~sa 333 (457)
..+.||||||...+ + .|+|+|... ... ...+ ..++++.||+.|+..||+.+.+ . .++.|+|||+.+
T Consensus 7 ~~i~iytDGs~~~n~g~~G~G~v~~~~~~~~~~~~~~-~~~Tnn~aEl~Ai~~AL~~~~~----~---~~v~I~tDS~~v 78 (166)
T 1ril_A 7 KRVALFTDGACLGNPGPGGWAALLRFHAHEKLLSGGE-ACTTNNRMELKAAIEGLKALKE----P---CEVDLYTDSHYL 78 (166)
T ss_dssp CCCCEEEEEEESSTTEEEEEEEEECBTTBCCEECCEE-EEECHHHHHHHHHHHHHHSCCS----C---CEEEEECCCHHH
T ss_pred ccEEEEECccccCCCCCEEEEEEEEECCEEEEEecCC-CCCcHHHHHHHHHHHHHHHhcc----C---CeEEEEeChHHH
Confidence 46789999999864 3 688888732 111 1112 4678999999999999997643 2 579999999999
Q ss_pred HHHhhc----------cCCCCc------------------cceEEEeeccc--ccchhh
Q psy11598 334 LQALKF----------NLNDSF------------------KRWEEIWTQNA--VLGRQL 362 (457)
Q Consensus 334 l~ai~~----------~~~~s~------------------q~i~l~WvPgH--I~GNE~ 362 (457)
+..|.+ ....++ ..|.|.||||| ++|||.
T Consensus 79 i~~i~~~w~~~W~~~~w~~~~g~~v~n~~l~~~i~~l~~~~~v~~~wV~gH~g~~~Ne~ 137 (166)
T 1ril_A 79 KKAFTEGWLEGWRKRGWRTAEGKPVKNRDLWEALLLAMAPHRVRFHFVKGHTGHPENER 137 (166)
T ss_dssp HHHHHSSHHHHHHHTTSBCTTSSBCTTHHHHHHHHHHHTTSEEECCCCCGGGSCTHHHH
T ss_pred HHHHhhhHHHHHHhcccccccCCccCcHHHHHHHHHHHhcCeEEEEEeeCCCCchhHHH
Confidence 999988 222222 17999999999 999997
No 7
>3qio_A GAG-POL polyprotein; RNAse H, inhibitor, nuclease, transferase, hydrolase- complex; HET: QID; 1.40A {Hiv-1 M} SCOP: c.55.3.1 PDB: 3qin_A* 3hyf_A* 1o1w_A 3lp3_A* 1hrh_A 3k2p_A* 1rdh_A
Probab=99.36 E-value=9e-13 Score=118.39 Aligned_cols=94 Identities=20% Similarity=0.234 Sum_probs=71.3
Q ss_pred CCceEEEecCCCCCCc--eeeEEEeCCc-chhhccCcccchhHHHHHHHHHHHHHHHHhhhccCCcceEEEEeccHHHHH
Q psy11598 259 KNKILCYTDGSKNDNF--TGGAYILNET-IEQFQLNQIASIYTAELMAIDLCLNAILTYVQNNFCFKDFVICSDSKSSLQ 335 (457)
Q Consensus 259 ~~~i~IyTDGSk~~~~--vG~a~v~~~~-~~~~~L~~~~svy~AEl~AI~~AL~~~~~~~~~~~~~~~i~I~sDS~sal~ 335 (457)
.+.+.||||||...++ .|+|++..+. .....+ ..+++..||++|+..||+.+ . .++.|+|||+.+++
T Consensus 10 ~~~~~iytDGs~~~n~g~~g~G~v~~~~~~~~~~~-~~~Tnn~aEl~A~i~AL~~~------~---~~v~i~tDS~~v~~ 79 (150)
T 3qio_A 10 VGAETFYVDGAANRETKLGKAGYVTNRGRQKVVTL-TDTTNQKTELQAIYLALQDS------G---LEVNIVTDSQYALG 79 (150)
T ss_dssp TTCEEEEEEEEECTTTCCEEEEEEETTSCEEEEEE-SSCCHHHHHHHHHHHHHHHS------C---SEEEEEESCHHHHH
T ss_pred CCCEEEEEccCCCCCCCCeEEEEEEEcCCEEEEeC-CCCCHHHHHHHHHHHHHHhC------C---CcEEEEeCcHHHHH
Confidence 4678999999986543 6777776332 112233 47899999999999999973 2 67999999999999
Q ss_pred HhhccC---------CCC-------------------ccceEEEeeccc--ccchhh
Q psy11598 336 ALKFNL---------NDS-------------------FKRWEEIWTQNA--VLGRQL 362 (457)
Q Consensus 336 ai~~~~---------~~s-------------------~q~i~l~WvPgH--I~GNE~ 362 (457)
.|.+.. ... ...|.|.||||| ++|||.
T Consensus 80 ~i~~w~~~W~~~gw~~~~g~~v~n~~l~~~l~~~l~~~~~v~~~wV~gH~g~~~Ne~ 136 (150)
T 3qio_A 80 IITQWIHNWKKRGWKTADKKPVKNVDLVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQ 136 (150)
T ss_dssp HHHHHHHHHCC------------CHHHHHHHHHHHTTCSEEEEEECCTTSCCHHHHH
T ss_pred HHHHHHHHHhhcCcCcCcCcccccHHHHHHHHHHHhhcCceEEEEccCcCCChhHHH
Confidence 998741 011 127999999999 999997
No 8
>3p1g_A Xenotropic murine leukemia virus-related virus (X H domain; XMRV, RNAse H, reverse transcriptase, transcription; 1.50A {Xenotropic mulv-related virus} PDB: 3v1q_A 3v1o_A 3v1r_A* 2hb5_A 4e89_A
Probab=99.33 E-value=2.2e-12 Score=117.74 Aligned_cols=95 Identities=20% Similarity=0.195 Sum_probs=68.8
Q ss_pred CceEEEecCCCCC--CceeeEEEe--CCcch-hhccCcccchhHHHHHHHHHHHHHHHHhhhccCCcceEEEEeccHHHH
Q psy11598 260 NKILCYTDGSKND--NFTGGAYIL--NETIE-QFQLNQIASIYTAELMAIDLCLNAILTYVQNNFCFKDFVICSDSKSSL 334 (457)
Q Consensus 260 ~~i~IyTDGSk~~--~~vG~a~v~--~~~~~-~~~L~~~~svy~AEl~AI~~AL~~~~~~~~~~~~~~~i~I~sDS~sal 334 (457)
.++.||||||+.. +..|+|++. .+... ...++..++++.||++|+..||+.+ + . .++.|+|||+.++
T Consensus 22 ~~i~iytDGs~~~npG~~g~G~vi~~~~~~~~~~~~~~~~Tnn~aEl~Ai~~AL~~~-~----~---~~v~I~tDS~~vi 93 (165)
T 3p1g_A 22 ADYTWYTDGSSFLQEGQRRAGAAVTTETEVIWARALPAGTSAQRAELIALTQALKMA-E----G---KKLNVYTDSRYAF 93 (165)
T ss_dssp CSEEEEEEEEEEEETTEEEEEEEEECSSCEEEEEEECTTCCHHHHHHHHHHHHHHHT-B----T---SEEEEEECCHHHH
T ss_pred CCEEEEEEcccCCCCCceEEEEEEEECCEEEEEecCCCCCcHHHHHHHHHHHHHHHc-c----C---ceEEEEEchHHHH
Confidence 3689999999973 335666654 22221 1234568899999999999999988 2 3 7899999999999
Q ss_pred HHhhccCCC-----------------CccceEEEeeccc-------ccchhh
Q psy11598 335 QALKFNLND-----------------SFKRWEEIWTQNA-------VLGRQL 362 (457)
Q Consensus 335 ~ai~~~~~~-----------------s~q~i~l~WvPgH-------I~GNE~ 362 (457)
+.|-..... .+..|.|.||||| ++|||.
T Consensus 94 ~~iw~~~~g~~v~n~dl~~~l~~~l~~~~~v~~~wVkgH~g~~~~~~~gNe~ 145 (165)
T 3p1g_A 94 ATAHVHSEGREIKNKNEILALLKALFLPKRLSIIHCPGHQKGNSAEARGNRM 145 (165)
T ss_dssp HHHHSCCCSCCCSSHHHHHHHHHHTTSBSEEEEEECCSSCCSCSHHHHHHHH
T ss_pred hhhhcccCCCcccCHHHHHHHHHHHhcCCceEEEEecCCCCCCcCcchHHHH
Confidence 998311111 1128999999999 356997
No 9
>3hst_B Protein RV2228C/MT2287; ribonuclease H1, RV2228C N-terminal domain, fusion protein, maltose binding protein, HYDR; HET: MLR TAR; 2.25A {Mycobacterium tuberculosis}
Probab=99.19 E-value=3.1e-11 Score=105.83 Aligned_cols=94 Identities=16% Similarity=0.201 Sum_probs=71.8
Q ss_pred ceEEEecCCCCCC--ceeeEEEeCCc----c---hhhccCcccchhHHHHHHHHHHHHHHHHhhhccCCcceEEEEeccH
Q psy11598 261 KILCYTDGSKNDN--FTGGAYILNET----I---EQFQLNQIASIYTAELMAIDLCLNAILTYVQNNFCFKDFVICSDSK 331 (457)
Q Consensus 261 ~i~IyTDGSk~~~--~vG~a~v~~~~----~---~~~~L~~~~svy~AEl~AI~~AL~~~~~~~~~~~~~~~i~I~sDS~ 331 (457)
.+.||||||...+ ..|+|++..+. . ....+ ..++++.||+.|+..||+++.+. .. .++.|+|||+
T Consensus 3 ~~~iy~DGs~~~~~g~~g~G~v~~~~~~~~~~~~~~~~~-~~~tn~~aEl~A~~~aL~~a~~~--~~---~~v~i~tDS~ 76 (141)
T 3hst_B 3 KVVIEADGGSRGNPGPAGYGAVVWTADHSTVLAESKQAI-GRATNNVAEYRGLIAGLDDAVKL--GA---TEAAVLMDSK 76 (141)
T ss_dssp EEEEEEEEEESSSSEEEEEEEEEEETTSCSEEEEEEEEE-EEECHHHHHHHHHHHHHHHHHHH--TC---SEEEEEESCH
T ss_pred EEEEEEecCCCCCCCCcEEEEEEEeCCCCcEEEeeeccC-CCCchHHHHHHHHHHHHHHHHHC--CC---ceEEEEeChH
Confidence 4789999998754 37888776321 1 11222 47899999999999999999876 33 7899999999
Q ss_pred HHHHHhhccCCCC-----------------ccceEEEeecccccchhh
Q psy11598 332 SSLQALKFNLNDS-----------------FKRWEEIWTQNAVLGRQL 362 (457)
Q Consensus 332 sal~ai~~~~~~s-----------------~q~i~l~WvPgHI~GNE~ 362 (457)
.+++.+.+..... ...|+|.|||+ +|||.
T Consensus 77 ~vv~~i~~~~~~~~~~l~~~~~~i~~l~~~~~~v~~~~V~~--~~N~~ 122 (141)
T 3hst_B 77 LVVEQMSGRWKVKHPDLLKLYVQAQALASQFRRINYEWVPR--ARNTY 122 (141)
T ss_dssp HHHHHHTTSSCCCSHHHHHHHHHHHHHHTTSSEEEEEECCG--GGCHH
T ss_pred HHHHHHhCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEcCC--cccHH
Confidence 9999998754211 12799999997 69997
No 10
>3u3g_D Ribonuclease H, RNAse H1; hydrolase, cleave the RNA strand of RNA/DNA hybrid; 1.40A {Uncultured organism}
Probab=99.18 E-value=4.3e-11 Score=104.37 Aligned_cols=95 Identities=17% Similarity=0.161 Sum_probs=71.6
Q ss_pred CceEEEecCCCCCC--ceeeEEEeCC--c-c---hhhccCcccchhHHHHHHHHHHHHHHHHhhhccCCcc----eEEEE
Q psy11598 260 NKILCYTDGSKNDN--FTGGAYILNE--T-I---EQFQLNQIASIYTAELMAIDLCLNAILTYVQNNFCFK----DFVIC 327 (457)
Q Consensus 260 ~~i~IyTDGSk~~~--~vG~a~v~~~--~-~---~~~~L~~~~svy~AEl~AI~~AL~~~~~~~~~~~~~~----~i~I~ 327 (457)
..+.||||||...+ ..|+|++..+ . . ....+ ..++++.||+.|+..||+++.+. .. . ++.|+
T Consensus 2 ~~~~iy~DGs~~~n~g~~G~G~v~~~~~g~~~~~~~~~~-~~~tn~~aEl~A~~~aL~~a~~~--~~---~~~~~~v~i~ 75 (140)
T 3u3g_D 2 NKIIIYTDGGARGNPGPAGIGVVITDEKGNTLHESSAYI-GETTNNVAEYEALIRALEDLQMF--GD---KLVDMEVEVR 75 (140)
T ss_dssp CEEEEEEEEEESSTTEEEEEEEEEECTTSCEEEEEEEEE-EEECHHHHHHHHHHHHHHHHGGG--GG---GGTTCEEEEE
T ss_pred ceEEEEEecCCCCCCCCcEEEEEEEeCCCCEEEEEEeeC-CCCchHHHHHHHHHHHHHHHHHc--CC---CCCCceEEEE
Confidence 35799999999764 3788887732 1 1 11122 35799999999999999999875 22 4 89999
Q ss_pred eccHHHHHHhhccCCC-Cc-----------------cceEEEeecccccchhh
Q psy11598 328 SDSKSSLQALKFNLND-SF-----------------KRWEEIWTQNAVLGRQL 362 (457)
Q Consensus 328 sDS~sal~ai~~~~~~-s~-----------------q~i~l~WvPgHI~GNE~ 362 (457)
|||+.+++.+.+.... +. ..|+|.|||+ +|||.
T Consensus 76 tDS~~vi~~i~~~~~~~~~~l~~~~~~i~~l~~~~~~~v~~~~V~~--~~N~~ 126 (140)
T 3u3g_D 76 MDSELIVRQMQGVYKVKEPTLKEKFAKIAHIKMERVPNLVFVHIPR--EKNAR 126 (140)
T ss_dssp ESCHHHHHHHTTSSCCCCGGGHHHHHHHHHHHHHHCTTCEEEECCG--GGGHH
T ss_pred eChHHHHHHhCCCcccCCHHHHHHHHHHHHHhhcCCCcEEEEEcCc--hhhHH
Confidence 9999999999875421 11 2799999996 69997
No 11
>2ehg_A Ribonuclease HI; RNAse HI, hyperthermophilic archaeon, D stranded RNA-dependent RNAse, hydrolase; 1.60A {Sulfolobus tokodaii} PDB: 3aly_A
Probab=99.15 E-value=7e-11 Score=105.11 Aligned_cols=94 Identities=14% Similarity=0.160 Sum_probs=70.7
Q ss_pred eEEEecCCCC-C--Cceee-EEEeCC--cc-hhh--ccC---cccchhHHHHHHHHHHHHHHHHhhhccCCcceEEEEec
Q psy11598 262 ILCYTDGSKN-D--NFTGG-AYILNE--TI-EQF--QLN---QIASIYTAELMAIDLCLNAILTYVQNNFCFKDFVICSD 329 (457)
Q Consensus 262 i~IyTDGSk~-~--~~vG~-a~v~~~--~~-~~~--~L~---~~~svy~AEl~AI~~AL~~~~~~~~~~~~~~~i~I~sD 329 (457)
+.||||||.. . ++.|+ |++..+ .. ..+ .++ ..++++.||+.|+..||+.+.+. .. .++.|+||
T Consensus 2 ~~iy~DGs~~~~n~g~~G~~G~vi~~~g~~~~~~~~~~~~~~~~~tnn~aEl~A~~~aL~~a~~~--g~---~~v~i~tD 76 (149)
T 2ehg_A 2 IIGYFDGLCEPKNPGGIATFGFVIYLDNRKIEGYGLAEKPFSINSTNNVAEYSGLICLMETMLRL--GI---SSPIIKGD 76 (149)
T ss_dssp CEEEEEEEEESSSSSSEEEEEEEEECSSCEEEEEEECSCTTCTTCCHHHHHHHHHHHHHHHHHHH--TC---CSCEEEES
T ss_pred EEEEEeeccCCCCCChheEEEEEEEECCEEEEEeccccCCCCCCccHHHHHHHHHHHHHHHHHHc--CC---CEEEEEeC
Confidence 5799999987 2 44775 776632 11 111 122 37889999999999999999876 33 78999999
Q ss_pred cHHHHHHhhccCCCCc-c---------------ceEEEeecccccchhh
Q psy11598 330 SKSSLQALKFNLNDSF-K---------------RWEEIWTQNAVLGRQL 362 (457)
Q Consensus 330 S~sal~ai~~~~~~s~-q---------------~i~l~WvPgHI~GNE~ 362 (457)
|+.+++.+.+....+. . .|.|.|||+| +||.
T Consensus 77 S~~vi~~i~~~w~~~~~~~~~l~~~i~~l~~~~~v~~~~V~~~--~N~~ 123 (149)
T 2ehg_A 77 SQLVIKQMNGEYKVKAKRIIPLYEKAIELKKKLNATLIWVPRE--ENKE 123 (149)
T ss_dssp CHHHHHHHTTSSCCCCTTHHHHHHHHHHHHHHHTCEEEECCGG--GCHH
T ss_pred hHHHHHHHhCccccCCHHHHHHHHHHHHHHhcCCEEEEEcCCc--ccHH
Confidence 9999999988643321 1 6999999995 9986
No 12
>2zd1_A Reverse transcriptase/ribonuclease H; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} PDB: 3is9_A* 3irx_A* 2ze2_A* 3bgr_A* 3qlh_A* 3klf_A* 3qo9_A* 1dlo_A 1bqm_A 2be2_A* 1s6q_A* 1s6p_A* 1s9g_A* 1suq_A* 2b5j_A* 2b6a_A* 2ban_A* 1s9e_A* 1hni_A* 1hnv_A* ...
Probab=99.15 E-value=3.8e-11 Score=128.96 Aligned_cols=95 Identities=21% Similarity=0.245 Sum_probs=74.0
Q ss_pred CCceEEEecCCCCCCc--eeeEEEeCC-cchhhccCcccchhHHHHHHHHHHHHHHHHhhhccCCcceEEEEeccHHHHH
Q psy11598 259 KNKILCYTDGSKNDNF--TGGAYILNE-TIEQFQLNQIASIYTAELMAIDLCLNAILTYVQNNFCFKDFVICSDSKSSLQ 335 (457)
Q Consensus 259 ~~~i~IyTDGSk~~~~--vG~a~v~~~-~~~~~~L~~~~svy~AEl~AI~~AL~~~~~~~~~~~~~~~i~I~sDS~sal~ 335 (457)
.+.+.||||||...++ .|+|++..+ ....+.+ ..+|++.||+.|+..||+.+ . ..+.|+|||+.++.
T Consensus 437 ~~~~~iytDGs~~~n~g~~g~g~v~~~~~~~~~~~-~~~TNn~aEl~Ai~~aL~~~------~---~~v~I~tDS~~vi~ 506 (557)
T 2zd1_A 437 VGAETFYVDGAANRETKLGKAGYVTNKGRQKVVPL-TNTTNQKTELQAIYLALQDS------G---LEVNIVTDSQYALG 506 (557)
T ss_dssp TTSCEEEEEEEECTTTCCEEEEEEETTSCEEEEEE-CSCCHHHHHHHHHHHHHHHS------C---SEEEEEECCHHHHH
T ss_pred CCCEEEEEccCCCCCCCceEEEEEEECCcEEEecC-CCCCHHHHHHHHHHHHHHhC------C---CcEEEEeChHHHHH
Confidence 4568999999986543 677777632 2111222 47899999999999999987 2 67999999999999
Q ss_pred HhhccCCCCcc--------------ceEEEeeccc--ccchhhh
Q psy11598 336 ALKFNLNDSFK--------------RWEEIWTQNA--VLGRQLR 363 (457)
Q Consensus 336 ai~~~~~~s~q--------------~i~l~WvPgH--I~GNE~~ 363 (457)
.|.+....+.+ .|.+.||||| ++|||..
T Consensus 507 ~i~~~~~~~~~~l~~~~~~~l~~~~~v~~~wV~~H~g~~~Ne~A 550 (557)
T 2zd1_A 507 IIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQV 550 (557)
T ss_dssp HHTTCCSEESSHHHHHHHHHHHHCSEEEEEECCSSSCCTTCCGG
T ss_pred HHhcCCccCCHHHHHHHHHHHhcCCCEEEEEcCCCCCChhHHHH
Confidence 99987655332 7999999999 9999973
No 13
>2lsn_A Reverse transcriptase; RNAse H, viral protein; NMR {Simian foamy virus}
Probab=99.12 E-value=1.1e-10 Score=106.53 Aligned_cols=97 Identities=16% Similarity=0.187 Sum_probs=66.1
Q ss_pred CceEEEecCCCCCC--c-----eeeEEEeC--Cc----chhhccC-cccchhHHHHHHHHHHHHHHHHhhhccCCcceEE
Q psy11598 260 NKILCYTDGSKNDN--F-----TGGAYILN--ET----IEQFQLN-QIASIYTAELMAIDLCLNAILTYVQNNFCFKDFV 325 (457)
Q Consensus 260 ~~i~IyTDGSk~~~--~-----vG~a~v~~--~~----~~~~~L~-~~~svy~AEl~AI~~AL~~~~~~~~~~~~~~~i~ 325 (457)
..++||||||+..+ . .|+|+|.. +. ..++..+ ...+...||+.|+..||+.+++. . .++.
T Consensus 6 ~evviYTDGsc~gNpgp~~~~~aG~Gv~~~~~~~~~~~~~~~~~~tnn~te~~Aei~Al~~al~~al~~---~---~~v~ 79 (165)
T 2lsn_A 6 YEGVFYTDGSAIKSPDPTKSNNAGMGIVHATYKPEYQVLNQWSIPLGNHTAQMAEIAAVEFACKKALKI---P---GPVL 79 (165)
T ss_dssp CSEEEEEEEEEEECSSCTTCEEEEEEEEEECCSSSCCEEEEEEEEESSCCHHHHHHHHHHHHHHHHHHS---S---SCEE
T ss_pred ceEEEEEcCCCCCCCCCCCCCcEEEEEEEEECCCccEEeccccCCchHHHHHHHHHHHHHHHHHHHhcC---C---CeEE
Confidence 45789999998754 2 68888762 21 1223322 34566778888888777776653 3 5799
Q ss_pred EEeccHHHHHHhhcc---------CCCCc-------------------cceEEEeeccc--c------cchhh
Q psy11598 326 ICSDSKSSLQALKFN---------LNDSF-------------------KRWEEIWTQNA--V------LGRQL 362 (457)
Q Consensus 326 I~sDS~sal~ai~~~---------~~~s~-------------------q~i~l~WvPgH--I------~GNE~ 362 (457)
|+|||+.+++.|... ....+ ..|.|.||||| + +|||.
T Consensus 80 I~TDS~Yvi~~it~w~~~Wk~ngw~~~~~~pVkN~dL~~~l~~~~~~~~~v~~~~VkgH~g~~~~~~~~gNe~ 152 (165)
T 2lsn_A 80 VITDSFYVAESANKELPYWKSNGFVNNKKKPLKHISKWKSIAECLSMKPDITIQHEKGHQPTNTSIHTEGNAL 152 (165)
T ss_dssp EEESCHHHHHHHHTHHHHHHHTTSCSCSSSCCSSHHHHHHHHHHHHHCTTCEEEECCSSSCSSSCHHHHHHHH
T ss_pred EEeChHHHHhhhhhhhhhheeccccccCCCcccCHHHHHHHHHHHhCCCCEEEEEEeCCCCccCCCCChHHHH
Confidence 999999999999642 11111 17999999999 2 47986
No 14
>1mu2_A HIV-2 RT; HIV-2 reverse transcriptase, AIDS, polymerase, drug design, transferase; 2.35A {Human immunodeficiency virus 2} SCOP: c.55.3.1 e.8.1.2 PDB: 1mu2_B
Probab=99.11 E-value=8.4e-11 Score=126.23 Aligned_cols=95 Identities=21% Similarity=0.197 Sum_probs=73.1
Q ss_pred CCceEEEecCCCCCCc--eeeEEEeCCc-chhhccCcccchhHHHHHHHHHHHHHHHHhhhccCCcceEEEEeccHHHHH
Q psy11598 259 KNKILCYTDGSKNDNF--TGGAYILNET-IEQFQLNQIASIYTAELMAIDLCLNAILTYVQNNFCFKDFVICSDSKSSLQ 335 (457)
Q Consensus 259 ~~~i~IyTDGSk~~~~--vG~a~v~~~~-~~~~~L~~~~svy~AEl~AI~~AL~~~~~~~~~~~~~~~i~I~sDS~sal~ 335 (457)
.+.+.||||||...++ .|+|++.... .....+ ..+++..||+.|+..||+. .. .++.|+|||+.++.
T Consensus 434 ~~~~~iytDGs~~~n~g~~g~G~v~~~~~~~~~~~-~~~TNn~aEl~A~i~aL~~------~~---~~v~I~tDS~~v~~ 503 (555)
T 1mu2_A 434 PGAETFYTDGSCNRQSKEGKAGYVTDRGKDKVKKL-EQTTNQQAELEAFAMALTD------SG---PKVNIIVDSQYVMG 503 (555)
T ss_dssp TTCEEEEEEEEECTTTCCEEEEEEETTSCEEEEEE-SSCCHHHHHHHHHHHHHHT------SC---SEEEEEESCHHHHH
T ss_pred CCceEEEEcccccCCCCCceEEEEEEeCCEeeccC-CCCCHHHHHHHHHHHHHHc------CC---CeEEEEEehHHHHH
Confidence 4578999999987653 6777777321 112222 4688999999999999997 13 78999999999999
Q ss_pred HhhccCCCCcc--------------ceEEEeeccc--ccchhhh
Q psy11598 336 ALKFNLNDSFK--------------RWEEIWTQNA--VLGRQLR 363 (457)
Q Consensus 336 ai~~~~~~s~q--------------~i~l~WvPgH--I~GNE~~ 363 (457)
.+.+....+.+ .|.+.||||| ++|||..
T Consensus 504 ~i~~~~~~~~~~l~~~~~~~~~~~~~v~~~wV~~H~g~~~Ne~A 547 (555)
T 1mu2_A 504 IVASQPTESESKIVNQIIEEMIKKEAIYVAWVPAHKGIGGNQEV 547 (555)
T ss_dssp HHHTCCSEESCHHHHHHHHHHHHCSEEEEEECCSSSCCTTHHHH
T ss_pred HHhcccccccHHHHHHHHHHhccCCcEEEEEEECCCCChhHHHH
Confidence 99876533332 7999999999 9999973
No 15
>1zbf_A Ribonuclease H-related protein; RNAse H, RNA/DNA hybrid, DDE motif, hydrolase; 1.50A {Bacillus halodurans} SCOP: c.55.3.1 PDB: 1zbi_A 2g8u_A 2g8i_A 2g8h_A 2g8k_A 2g8f_A 2g8v_A 2g8w_A 3ey1_A* 1zbl_A 3d0p_A* 3i8d_A* 2r7y_A*
Probab=98.28 E-value=7.8e-07 Score=78.93 Aligned_cols=76 Identities=17% Similarity=-0.000 Sum_probs=57.3
Q ss_pred CCceEEEecCCCCCC-c-eeeEEEeCCc--ch--hhccCcccchhHHHHHHHHHHHHHHHHhhhccCCcceEEEEeccHH
Q psy11598 259 KNKILCYTDGSKNDN-F-TGGAYILNET--IE--QFQLNQIASIYTAELMAIDLCLNAILTYVQNNFCFKDFVICSDSKS 332 (457)
Q Consensus 259 ~~~i~IyTDGSk~~~-~-vG~a~v~~~~--~~--~~~L~~~~svy~AEl~AI~~AL~~~~~~~~~~~~~~~i~I~sDS~s 332 (457)
...+.||||||...+ | .|+|+|.... .. ...+ ..+|+..||++|+..||+.+.+. . . ++.|+|||+.
T Consensus 9 ~~~~~iy~DGa~~gNpG~~G~G~vl~~~g~~~~~~~~~-~~~TNN~aEl~A~i~aL~~~~~~---~--~-~v~i~tDS~~ 81 (142)
T 1zbf_A 9 IIWESLSVDVGSQGNPGIVEYKGVDTKTGEVLFEREPI-PIGTNNMGEFLAIVHGLRYLKER---N--S-RKPIYSNSQT 81 (142)
T ss_dssp CCSSSEEEEEEECSSSEEEEEEEEETTTCCEEEECCCE-EEECHHHHHHHHHHHHHHHHHHT---T--C-CCCEEESCHH
T ss_pred CCeEEEEEeeccCCCCCCeEEEEEEEeCCEEEEEeccc-CCcCcHHHHHHHHHHHHHHHHhC---C--C-eEEEEEehHH
Confidence 356789999998754 3 7888887421 11 1122 26789999999999999999874 2 1 7999999999
Q ss_pred HHHHhhccC
Q psy11598 333 SLQALKFNL 341 (457)
Q Consensus 333 al~ai~~~~ 341 (457)
++..+.+..
T Consensus 82 vi~w~~~~~ 90 (142)
T 1zbf_A 82 AIKWVKDKK 90 (142)
T ss_dssp HHHHHHHTC
T ss_pred HHHHHHcCC
Confidence 999887765
No 16
>4htu_A Ribonuclease H, RNAse H; 5-chloro-2'-deoxyuridine, W-C base PAIR, wobble base PAIR, D helix; HET: DNA UCL; 1.49A {Bacillus halodurans} PDB: 3d0p_A* 4hue_A* 4huf_A* 4hug_A* 1zbf_A 1zbi_A 2g8u_A 3uld_A* 3ey1_A* 3twh_A* 2g8f_A 2g8v_A 2g8w_A 2g8i_A 2g8h_A 2g8k_A 3i8d_A* 2r7y_A* 1zbl_A
Probab=98.27 E-value=6.3e-07 Score=78.64 Aligned_cols=75 Identities=19% Similarity=0.050 Sum_probs=54.1
Q ss_pred CCceEEEecCCCCCC-c-eeeEEEeCCc--c--hhhccCcccchhHHHHHHHHHHHHHHHHhhhccCCcceEEEEeccHH
Q psy11598 259 KNKILCYTDGSKNDN-F-TGGAYILNET--I--EQFQLNQIASIYTAELMAIDLCLNAILTYVQNNFCFKDFVICSDSKS 332 (457)
Q Consensus 259 ~~~i~IyTDGSk~~~-~-vG~a~v~~~~--~--~~~~L~~~~svy~AEl~AI~~AL~~~~~~~~~~~~~~~i~I~sDS~s 332 (457)
+....||||||+..+ | .|.|+|.... . ....+ ..+++..||++|+..||+.+.+. . ..+.|+|||+.
T Consensus 3 p~~~~iytDGac~GNPGp~G~ggV~~~~g~~~~~~g~~-~~tTNN~aEl~A~i~aL~~l~~~---~---~~v~i~tDSqy 75 (134)
T 4htu_A 3 IIWESLSVDVGSQGNPGIVEYKGVDTKTGEVLFEREPI-PIGTNNMGEFLAIVHGLRYLKER---N---SRKPIYSNSQT 75 (134)
T ss_dssp CCSSSEEEEEEEETTTEEEEEEEEETTTCCEEEEEEEE-EEECHHHHHHHHHHHHHHHHHHT---T---CCCCEEESCHH
T ss_pred ccceEEEEeeccCCCCCCeEEEEEEEECCEEEEEecCC-CCCchHHHHHHHHHHHHHHHHhC---C---CCEEEEcchHH
Confidence 345689999998764 3 6775555221 1 11122 37899999999999999999774 2 23799999999
Q ss_pred HHHHhhcc
Q psy11598 333 SLQALKFN 340 (457)
Q Consensus 333 al~ai~~~ 340 (457)
+++-|.+.
T Consensus 76 Vi~wi~~~ 83 (134)
T 4htu_A 76 AIKWVKDK 83 (134)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHcC
Confidence 99888754
No 17
>1rw3_A POL polyprotein; RNA and DNA dependent DNA polymerase, reverse transcriptase, transferase, replication; 3.00A {Moloney murine leukemia virus} SCOP: e.8.1.2
Probab=85.51 E-value=0.22 Score=51.53 Aligned_cols=74 Identities=11% Similarity=0.005 Sum_probs=48.0
Q ss_pred CCceEEEecCCCCCCceeeEEEe-CCc----ch---hhccC---cccchhHHHHHHHHHHHHHHHHhhhccCCcceEEEE
Q psy11598 259 KNKILCYTDGSKNDNFTGGAYIL-NET----IE---QFQLN---QIASIYTAELMAIDLCLNAILTYVQNNFCFKDFVIC 327 (457)
Q Consensus 259 ~~~i~IyTDGSk~~~~vG~a~v~-~~~----~~---~~~L~---~~~svy~AEl~AI~~AL~~~~~~~~~~~~~~~i~I~ 327 (457)
...+.+|||+|. .++|+ ++. .+. .. +-++. ...+++..|+.||..|++....... ...+.|+
T Consensus 344 ~~~~~l~~DAS~--~~~ga-vL~q~~~~~~~~i~y~Sk~l~~~e~~ys~~ekEllAi~~a~~~~~~yl~----g~~~~v~ 416 (455)
T 1rw3_A 344 TKPFELFVDEKQ--GYAKG-VLTQKLGPWRRPVAYLSKKLDPVAAGWPPCLRMVAAIAVLTKDAGKLTM----GQPLVIK 416 (455)
T ss_dssp CCTTSCEEEEEE--CSSSB-EECCBCTTTTCCCCCCCBCSCSSCSSSCCSSHHHHHHHHHHHHHHGGGC----SSCEEEE
T ss_pred CCcEEEEEeccC--Cccee-EEEEecCCcEEEEEEEcccCCccccccchHHHHHHHHHHHHHHHHHHcC----CCcEEEE
Confidence 445689999985 34443 333 210 01 11122 3567889999999999999877633 3789999
Q ss_pred eccHHHHHHhhcc
Q psy11598 328 SDSKSSLQALKFN 340 (457)
Q Consensus 328 sDS~sal~ai~~~ 340 (457)
||+. ++.-+.+.
T Consensus 417 tDh~-~~~~l~~~ 428 (455)
T 1rw3_A 417 APHA-VEALVKQP 428 (455)
T ss_dssp CSSC-TTTTSSST
T ss_pred ecCh-HHHHhCCC
Confidence 9996 66555543
No 18
>2zd1_B P51 RT; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} SCOP: e.8.1.2 PDB: 2ykm_B* 2ykn_B* 2ze2_B* 3bgr_B* 3ig1_B* 3irx_B* 3is9_B* 3qo9_B* 3v4i_B* 3v6d_B* 3v81_B* 3klf_B* 3kk1_B* 3kjv_B* 3kk2_B* 3kk3_B* 2be2_B* 1n5y_B* 1bqm_B* 1n6q_B* ...
Probab=55.14 E-value=20 Score=36.46 Aligned_cols=79 Identities=3% Similarity=-0.214 Sum_probs=43.6
Q ss_pred CCceEEEecCCCCCCceeeEEEeCCcc----hhhccCcccchhHHHHHH-HHHHHHHHHHhhhccCCcceEEEEeccHHH
Q psy11598 259 KNKILCYTDGSKNDNFTGGAYILNETI----EQFQLNQIASIYTAELMA-IDLCLNAILTYVQNNFCFKDFVICSDSKSS 333 (457)
Q Consensus 259 ~~~i~IyTDGSk~~~~vG~a~v~~~~~----~~~~L~~~~svy~AEl~A-I~~AL~~~~~~~~~~~~~~~i~I~sDS~sa 333 (457)
...+.++||+|... .+|+....++.. ..+.-......+.-|++| |..||+......- +..+..++++||.+.
T Consensus 322 ~~~~~l~~das~~g-~~g~vl~q~~~~~~~s~~~~~~~~y~~~~~e~la~vv~al~~~r~yl~-G~~~~~~i~~td~~~- 398 (428)
T 2zd1_B 322 SKDLIAEIQKQGQG-QWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVIW-GKTPKFKLPIQKETW- 398 (428)
T ss_dssp TSCCEEEEEEEETT-EEEEEEESSTTCEEEEEEEECCSSCTTCHHHHHHHHHHHHHHHHHHHH-SSCCEEEESSCHHHH-
T ss_pred CCCEEEEEecCCCC-cEEEEEecCCCceeeecccchhhhcccchHHHHHHHHHHhhccceEEE-CCCCcEECCccHHHH-
Confidence 45679999999532 223222222211 112211234455667777 9999987655532 222466788999975
Q ss_pred HHHhhcc
Q psy11598 334 LQALKFN 340 (457)
Q Consensus 334 l~ai~~~ 340 (457)
++-+.+.
T Consensus 399 ~~~~~~~ 405 (428)
T 2zd1_B 399 ETWWTEY 405 (428)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 4455443
Done!