BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11599
(76 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1XOD|A Chain A, Crystal Structure Of X. Tropicalis Spred1 Evh-1 Domain
pdb|1XOD|B Chain B, Crystal Structure Of X. Tropicalis Spred1 Evh-1 Domain
Length = 118
Score = 65.1 bits (157), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 35/61 (57%)
Query: 9 GSEISFTGVVLSCTITRDFTYNKVMPTFHHWQTGNKKFGLTXXXXXXXXXXXXGVRNALQ 68
G + VVL C + RD YNKV PTFHHW+ G+KKFGLT G+R A++
Sbjct: 54 GERLRDKTVVLECVLRRDLVYNKVTPTFHHWRIGDKKFGLTFQSPADARAFDRGIRRAIE 113
Query: 69 E 69
+
Sbjct: 114 D 114
>pdb|1TJ6|A Chain A, Crystal Structure Of The Xenopus Tropicalis Spred1 Evh-1
Domain
pdb|1TJ6|B Chain B, Crystal Structure Of The Xenopus Tropicalis Spred1 Evh-1
Domain
Length = 118
Score = 64.3 bits (155), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 35/61 (57%)
Query: 9 GSEISFTGVVLSCTITRDFTYNKVMPTFHHWQTGNKKFGLTXXXXXXXXXXXXGVRNALQ 68
G + V+L C + RD YNKV PTFHHW+ G+KKFGLT G+R A++
Sbjct: 54 GERLRDKTVILECVLRRDLVYNKVTPTFHHWRIGDKKFGLTFQSPADARAFDRGIRRAIE 113
Query: 69 E 69
+
Sbjct: 114 D 114
>pdb|3SYX|A Chain A, Crystal Structure Of The Wh1 Domain From Human
Sprouty-Related, Evh1 Domain-Containing Protein.
Northeast Structural Genomics Consortium Target Hr5538b
Length = 130
Score = 59.7 bits (143), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 34/61 (55%)
Query: 9 GSEISFTGVVLSCTITRDFTYNKVMPTFHHWQTGNKKFGLTXXXXXXXXXXXXGVRNALQ 68
G + VVL C + +D YNKV PTFHHW+ +KKFGLT G+R A++
Sbjct: 61 GERLRDKMVVLECMLKKDLIYNKVTPTFHHWKIDDKKFGLTFQSPADARAFDRGIRRAIE 120
Query: 69 E 69
+
Sbjct: 121 D 121
>pdb|2JP2|A Chain A, Solution Structure And Resonance Assignment Of The N-
Terminal Evh1 Domain From The Human Spred2 Protein
(Sprouty-Related Protein With Evh1 Domain Isoform 2)
Length = 126
Score = 57.0 bits (136), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 31/56 (55%)
Query: 17 VVLSCTITRDFTYNKVMPTFHHWQTGNKKFGLTXXXXXXXXXXXXGVRNALQEYLH 72
VVL C + +D Y K PTFHHW+ N+KFGLT GVR A+++ +
Sbjct: 71 VVLECYVRKDLVYTKANPTFHHWKVDNRKFGLTFQSPADARAFDRGVRKAIEDLIE 126
>pdb|1EGX|A Chain A, Solution Structure Of The Ena-Vasp Homology 1 (Evh1)
Domain Of Human Vasodilator-Stimulated Phosphoprotein
(Vasp)
Length = 115
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 25/52 (48%)
Query: 17 VVLSCTITRDFTYNKVMPTFHHWQTGNKKFGLTXXXXXXXXXXXXGVRNALQ 68
VV++C I R YN+ P FH W+ + +GL G+ +AL+
Sbjct: 60 VVINCAIVRGVKYNQATPNFHQWRDARQVWGLNFGSKEDAAQFAAGMASALE 111
>pdb|2XQN|M Chain M, Complex Of The 2nd And 3rd Lim Domains Of Tes With The
Evh1 Domain Of Mena And The N-Terminal Domain Of
Actin-Like Protein Arp7a
Length = 119
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 23/41 (56%)
Query: 8 LGSEISFTGVVLSCTITRDFTYNKVMPTFHHWQTGNKKFGL 48
+G +I VV++C I + YN+ TFH W+ + +GL
Sbjct: 52 VGRKIQDHQVVINCAIPKGLKYNQATQTFHQWRDARQVYGL 92
>pdb|2IYB|A Chain A, Structure Of Complex Between The 3rd Lim Domain Of Tes
And The Evh1 Domain Of Mena
pdb|2IYB|B Chain B, Structure Of Complex Between The 3rd Lim Domain Of Tes
And The Evh1 Domain Of Mena
pdb|2IYB|C Chain C, Structure Of Complex Between The 3rd Lim Domain Of Tes
And The Evh1 Domain Of Mena
pdb|2IYB|D Chain D, Structure Of Complex Between The 3rd Lim Domain Of Tes
And The Evh1 Domain Of Mena
Length = 114
Score = 37.0 bits (84), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 23/41 (56%)
Query: 8 LGSEISFTGVVLSCTITRDFTYNKVMPTFHHWQTGNKKFGL 48
+G +I VV++C I + YN+ TFH W+ + +GL
Sbjct: 50 VGRKIQDHQVVINCAIPKGLKYNQATQTFHQWRDARQVYGL 90
>pdb|1EVH|A Chain A, Evh1 Domain From Murine Enabled In Complex With Acta
Peptide
Length = 112
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 23/41 (56%)
Query: 8 LGSEISFTGVVLSCTITRDFTYNKVMPTFHHWQTGNKKFGL 48
+G +I VV++C I + YN+ TFH W+ + +GL
Sbjct: 49 VGRKIQDHQVVINCAIPKGLKYNQATQTFHQWRDARQVYGL 89
>pdb|1QC6|A Chain A, Evh1 Domain From EnaVASP-Like Protein In Complex With
Acta Peptide
pdb|1QC6|B Chain B, Evh1 Domain From EnaVASP-Like Protein In Complex With
Acta Peptide
Length = 130
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 24/41 (58%)
Query: 8 LGSEISFTGVVLSCTITRDFTYNKVMPTFHHWQTGNKKFGL 48
+G ++ VV++ +I + YN+ PTFH W+ + +GL
Sbjct: 50 VGVKLQDQQVVINYSIVKGLKYNQATPTFHQWRDARQVYGL 90
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.136 0.436
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,105,875
Number of Sequences: 62578
Number of extensions: 57521
Number of successful extensions: 77
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 68
Number of HSP's gapped (non-prelim): 9
length of query: 76
length of database: 14,973,337
effective HSP length: 45
effective length of query: 31
effective length of database: 12,157,327
effective search space: 376877137
effective search space used: 376877137
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 45 (21.9 bits)