Query psy11599
Match_columns 76
No_of_seqs 100 out of 137
Neff 5.3
Searched_HMMs 29240
Date Fri Aug 16 22:46:08 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11599.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11599hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3syx_A Sprouty-related, EVH1 d 100.0 3.7E-36 1.3E-40 201.0 10.3 73 3-75 55-127 (130)
2 1xod_A Spred1; sprouty, EVH1, 100.0 1.2E-33 4E-38 185.2 8.9 72 2-73 47-118 (118)
3 1egx_A VAsp, vasodilator-stimu 100.0 1.3E-33 4.3E-38 184.2 8.4 71 2-72 44-115 (115)
4 1evh_A WH1 domain, protein (ME 100.0 1.4E-33 5E-38 183.1 8.4 70 2-71 43-112 (112)
5 2jp2_A Spred-2, sprouty-relate 100.0 2.8E-33 9.5E-38 185.5 8.6 71 2-72 56-126 (126)
6 1ddw_A GLGF-domain protein hom 100.0 2.7E-30 9.3E-35 169.9 9.2 69 2-72 42-112 (120)
7 1i2h_A PSD-ZIP45(homer-1C/VESL 100.0 9.3E-29 3.2E-33 170.8 9.1 69 2-72 47-117 (168)
8 1qc6_A EVH1 domain from ENA/VA 100.0 1.6E-28 5.6E-33 162.1 8.9 72 2-73 44-115 (130)
9 1mke_A WIP - N-WAsp, fusion pr 99.8 1.7E-20 5.9E-25 127.7 7.5 66 5-72 80-145 (152)
10 2ifs_A N-WAsp, wiskott-aldrich 99.8 1.4E-20 4.7E-25 129.9 7.1 68 4-73 96-163 (169)
11 2crf_A RAN binding protein 3; 98.8 1.7E-08 5.9E-13 67.7 8.6 68 3-71 67-140 (150)
12 3n7c_A ABR034WP; nuclear pore 98.8 1.7E-08 5.8E-13 66.4 7.7 70 3-72 48-124 (130)
13 1xke_A RAN-binding protein 2; 98.7 1.4E-07 4.7E-12 61.7 8.3 71 2-72 43-123 (130)
14 2y8g_A Ranbp3-B, RAN-binding p 98.5 6.7E-07 2.3E-11 59.1 8.2 67 3-70 55-127 (138)
15 1rrp_B Nuclear pore complex pr 98.4 2.7E-07 9.3E-12 60.5 5.2 66 2-67 57-132 (134)
16 1k5d_B RAN-specific GTPase-act 97.7 0.00014 4.9E-09 50.9 7.8 70 2-71 83-163 (201)
17 4hat_B RAN-specific GTPase-act 97.2 0.0024 8.1E-08 42.2 8.3 69 3-71 59-138 (140)
18 3m1i_B RAN-specific GTPase-act 97.1 0.0048 1.7E-07 42.9 8.9 69 3-71 110-189 (191)
19 2ec1_A Nucleoporin 50 kDa; ran 96.5 0.0089 3.1E-07 38.5 6.3 65 3-67 46-123 (125)
20 2oqb_A Histone-arginine methyl 93.6 0.79 2.7E-05 29.7 8.6 52 15-66 54-105 (117)
21 2jya_A AGR_C_3324P, uncharacte 80.9 1.1 3.8E-05 28.4 2.6 20 43-62 51-70 (106)
22 2qkl_A DCP1 protein, SPBC3B9.2 79.7 9.7 0.00033 24.4 7.1 47 21-68 79-126 (127)
23 2lju_A Putative oxidoreductase 72.6 1.2 4.2E-05 28.2 1.1 20 43-62 59-78 (108)
24 2lyd_A Decapping protein 1; DC 71.8 17 0.00058 23.4 7.1 47 21-68 85-132 (134)
25 3igm_B PF14_0633 protein; AP2 66.1 19 0.00064 21.6 5.7 46 24-69 8-60 (77)
26 4emo_A Sharpin; pleckstrin hom 66.1 21 0.00071 23.3 5.9 56 16-72 69-127 (129)
27 4e6z_A Apicoplast TIC22, putat 48.9 23 0.00077 25.4 4.2 28 40-67 93-120 (279)
28 2bop_A Protein (E2); protein-D 34.2 41 0.0014 20.1 3.1 35 28-63 27-68 (85)
29 1qhk_A RNAse HI, protein (ribo 33.6 18 0.00063 19.1 1.3 13 48-60 34-46 (47)
30 4dm5_A Osmotically inducible l 30.8 85 0.0029 19.6 4.3 41 15-58 50-90 (103)
31 2g18_A Phycocyanobilin:ferredo 30.5 20 0.00068 25.4 1.4 27 4-36 81-107 (253)
32 1u5d_A SKAP55, SRC kinase-asso 30.5 59 0.002 17.8 3.3 28 44-71 81-108 (108)
33 3bsu_A Ribonuclease H1, RNAse 29.1 28 0.00096 18.8 1.6 15 48-62 36-50 (53)
34 3fx7_A Putative uncharacterize 26.0 62 0.0021 19.8 3.0 23 50-72 5-27 (94)
35 3izx_B Capsid protein VP1; cyt 24.7 6 0.00021 34.2 -2.4 62 9-71 747-814 (1333)
36 2dn6_A KIAA0640 protein; PH do 24.2 1E+02 0.0035 17.2 4.4 32 42-73 77-108 (115)
37 3dml_A Putative uncharacterize 23.4 95 0.0032 19.0 3.5 39 31-71 75-113 (116)
38 1tqz_A Necap1; endocytosis, st 22.1 91 0.0031 20.2 3.3 25 46-70 106-130 (133)
39 2hpu_A NOSL protein; alpha bet 21.5 54 0.0019 21.7 2.2 15 48-62 115-129 (175)
40 3kxe_A Toxin protein PARE-1; c 21.3 77 0.0026 18.7 2.7 21 52-72 40-60 (110)
41 2z0r_A Putative uncharacterize 21.3 1.3E+02 0.0043 18.8 3.8 23 41-63 24-46 (103)
42 3rcp_A Pleckstrin homology dom 21.1 97 0.0033 17.1 3.0 32 43-74 68-99 (103)
43 3qwm_A Iqsec1, IQ motif and SE 20.1 1.4E+02 0.0046 19.3 3.9 26 46-71 100-125 (140)
No 1
>3syx_A Sprouty-related, EVH1 domain-containing protein 1; WH1 domain, human sprouty-related, EVH1 domain-containing PR Q7Z699; 2.45A {Homo sapiens}
Probab=100.00 E-value=3.7e-36 Score=201.00 Aligned_cols=73 Identities=47% Similarity=0.786 Sum_probs=71.0
Q ss_pred eeEEEEeccccCCeEEEeEeeecCeEEeecCCceeeEeeCCeEEEeecCCHHHHHHHHHHHHHHhhhhhccCC
Q psy11599 3 IVGAWLGSEISFTGVVLSCTITRDFTYNKVMPTFHHWQTGNKKFGLTFQAAADARAFDQGVRNALQEYLHDKS 75 (76)
Q Consensus 3 ~~~~i~G~~l~D~~vvlnc~l~~~l~Yn~atp~FHqWr~~~~~~GLnF~s~~eA~~F~~~v~~al~~l~~g~~ 75 (76)
++|||+|+|++|++|+|||.|.++|+||++||+||||||++++|||||+|+|||++|.++|++||+.|.+|++
T Consensus 55 ~~yRIvg~r~~d~~vvinc~I~~~l~Ynkatp~FHqWrd~~~~yGL~F~S~~dA~~F~~~~~~Al~~L~~g~~ 127 (130)
T 3syx_A 55 ADFFIRGERLRDKMVVLECMLKKDLIYNKVTPTFHHWKIDDKKFGLTFQSPADARAFDRGIRRAIEDISQGCP 127 (130)
T ss_dssp EEEEEEEEETTTCCEEEEEECCTTCEEEEEETTEEEEEETTEEEEEEESSHHHHHHHHHHHHHHHHGGGSCC-
T ss_pred cEEEEEEEecCCCeEEEeeeecCCceEEecccccccccccCeEeecccCCHHHHHHHHHHHHHHHHHHhcCCC
Confidence 7999999999999999999999999999999999999999999999999999999999999999999999964
No 2
>1xod_A Spred1; sprouty, EVH1, peptide-binding, signaling protein; 1.15A {Xenopus tropicalis} SCOP: b.55.1.4 PDB: 1tj6_A
Probab=100.00 E-value=1.2e-33 Score=185.22 Aligned_cols=72 Identities=50% Similarity=0.876 Sum_probs=68.9
Q ss_pred ceeEEEEeccccCCeEEEeEeeecCeEEeecCCceeeEeeCCeEEEeecCCHHHHHHHHHHHHHHhhhhhcc
Q psy11599 2 NIVGAWLGSEISFTGVVLSCTITRDFTYNKVMPTFHHWQTGNKKFGLTFQAAADARAFDQGVRNALQEYLHD 73 (76)
Q Consensus 2 ~~~~~i~G~~l~D~~vvlnc~l~~~l~Yn~atp~FHqWr~~~~~~GLnF~s~~eA~~F~~~v~~al~~l~~g 73 (76)
+++|||+|++++|++|+|||+|+++|+||+++|+||||++++|+|||||+||+||++|..+|.+||+.|.+|
T Consensus 47 ~~~yrIv~~~l~~~~vv~~~~l~~~~~y~~~~p~Fh~w~~~~~~~GL~F~se~eA~~F~~~v~~al~~l~~g 118 (118)
T 1xod_A 47 GTEFLVHGERLRDKTVVLECVLRRDLVYNKVTPTFHHWRIGDKKFGLTFQSPADARAFDRGIRRAIEDLSQG 118 (118)
T ss_dssp --CCEEEEEETTTCCEEEEEECCTTCEEEEEETTEEEEEETTEEEEEEESSHHHHHHHHHHHHHHHHHHCCC
T ss_pred CCEEEEEEEECCCCeEEEEEEEeCCcEEEecCCcceEEEeCCEEEEEecCCHHHHHHHHHHHHHHHHHHhcC
Confidence 578999999999999999999999999999999999999999999999999999999999999999999876
No 3
>1egx_A VAsp, vasodilator-stimulated phosphoprotein; EVH1, VAsp-ENA, poly-proline-binding domain, signaling protein; NMR {Homo sapiens} SCOP: b.55.1.4
Probab=100.00 E-value=1.3e-33 Score=184.23 Aligned_cols=71 Identities=30% Similarity=0.580 Sum_probs=69.0
Q ss_pred ceeEEEEecccc-CCeEEEeEeeecCeEEeecCCceeeEeeCCeEEEeecCCHHHHHHHHHHHHHHhhhhhc
Q psy11599 2 NIVGAWLGSEIS-FTGVVLSCTITRDFTYNKVMPTFHHWQTGNKKFGLTFQAAADARAFDQGVRNALQEYLH 72 (76)
Q Consensus 2 ~~~~~i~G~~l~-D~~vvlnc~l~~~l~Yn~atp~FHqWr~~~~~~GLnF~s~~eA~~F~~~v~~al~~l~~ 72 (76)
+++|||+|++|+ |++|+|||+||++|+||+++|+||||++++|+|||||+||+||++|..+|.+||+.|++
T Consensus 44 ~~~yrI~~~~l~~~~~vv~~~~l~~~l~y~~~~p~FH~w~~~~~~~GLnF~se~eA~~F~~~v~~al~~l~~ 115 (115)
T 1egx_A 44 ANSFRVVGRKMQPDQQVVINCAIVRGVKYNQATPNFHQWRDARQVWGLNFGSKEDAAQFAAGMASALEALEG 115 (115)
T ss_dssp TTEEEEEEEESSTTCCEEEEEEECSSCCCCCSSTTEEEEESSSCEEEEEESSHHHHHHHHHHHHHHHHHHHC
T ss_pred CCEEEEEEEEcCCCCEEEEeeEEcCCceEEecCccceEEecCCEEEEEecCCHHHHHHHHHHHHHHHHHhcC
Confidence 579999999999 99999999999999999999999999999999999999999999999999999999864
No 4
>1evh_A WH1 domain, protein (MENA EVH1 domain); molecular recognition, actin dynamics, contractIle protein; 1.80A {Mus musculus} SCOP: b.55.1.4 PDB: 2xqn_M 2iyb_A
Probab=100.00 E-value=1.4e-33 Score=183.11 Aligned_cols=70 Identities=30% Similarity=0.570 Sum_probs=68.1
Q ss_pred ceeEEEEeccccCCeEEEeEeeecCeEEeecCCceeeEeeCCeEEEeecCCHHHHHHHHHHHHHHhhhhh
Q psy11599 2 NIVGAWLGSEISFTGVVLSCTITRDFTYNKVMPTFHHWQTGNKKFGLTFQAAADARAFDQGVRNALQEYL 71 (76)
Q Consensus 2 ~~~~~i~G~~l~D~~vvlnc~l~~~l~Yn~atp~FHqWr~~~~~~GLnF~s~~eA~~F~~~v~~al~~l~ 71 (76)
+++|||+|++++|++|+|||+||++|+||+++|+||||++++|+|||||+||+||++|..+|.+||+.|.
T Consensus 43 ~~~yrIv~~~l~~~~vv~~~~l~~~~~y~~~~p~Fh~w~~~~~~~GLnF~se~eA~~F~~~v~~al~~l~ 112 (112)
T 1evh_A 43 NNTFRVVGRKIQDHQVVINCAIPKGLKYNQATQTFHQWRDARQVYGLNFGSKEDANVFASAMMHALEVLN 112 (112)
T ss_dssp TTEEEEEEEETTTCCEEEEEEECTTCCCBCCSSSEEEEECSSCEEEEEESSHHHHHHHHHHHHHHHHHHC
T ss_pred CCEEEEEEEECCCCcEEEeeEecCCceEEecCccceeEecCCEEEEEecCCHHHHHHHHHHHHHHHHhcC
Confidence 5789999999999999999999999999999999999999999999999999999999999999999874
No 5
>2jp2_A Spred-2, sprouty-related, EVH1 domain-containing protein 2; solution structure, structural genomics, structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=100.00 E-value=2.8e-33 Score=185.51 Aligned_cols=71 Identities=46% Similarity=0.788 Sum_probs=68.9
Q ss_pred ceeEEEEeccccCCeEEEeEeeecCeEEeecCCceeeEeeCCeEEEeecCCHHHHHHHHHHHHHHhhhhhc
Q psy11599 2 NIVGAWLGSEISFTGVVLSCTITRDFTYNKVMPTFHHWQTGNKKFGLTFQAAADARAFDQGVRNALQEYLH 72 (76)
Q Consensus 2 ~~~~~i~G~~l~D~~vvlnc~l~~~l~Yn~atp~FHqWr~~~~~~GLnF~s~~eA~~F~~~v~~al~~l~~ 72 (76)
+++|||+|++++|++|+|||+||++|+||+++|+||||++++|+|||||+||+||++|..+|.+||+.|.+
T Consensus 56 ~~~yrI~~~~l~d~~vv~~~~l~~~l~Y~~~~p~FH~w~~~~~~~GLnF~se~eA~~F~~~v~~al~~l~~ 126 (126)
T 2jp2_A 56 RSGFLIHGERQKDKLVVLECYVRKDLVYTKANPTFHHWKVDNRKFGLTFQSPADARAFDRGVRKAIEDLIE 126 (126)
T ss_dssp CBCEEEEEEESSSSCEEEEEEESSCCCEEEEETTEEEEECSSSEEEEEESSHHHHHHHHHHHHHHHHHHHC
T ss_pred CCEEEEEEEEcCCCeEEEEEEEeCCceEEecCCcceEEEcCCEEEEEecCCHHHHHHHHHHHHHHHHHhhC
Confidence 57999999999999999999999999999999999999999999999999999999999999999999863
No 6
>1ddw_A GLGF-domain protein homer; pleckstrin homology domain fold, signaling protein; 1.70A {Rattus norvegicus} SCOP: b.55.1.4 PDB: 1ddv_A 2p8v_A 1i7a_A*
Probab=99.97 E-value=2.7e-30 Score=169.86 Aligned_cols=69 Identities=17% Similarity=0.298 Sum_probs=65.4
Q ss_pred ceeEEEEeccccCCeEEEeEeeecCeEEeecCCceeeEeeCC--eEEEeecCCHHHHHHHHHHHHHHhhhhhc
Q psy11599 2 NIVGAWLGSEISFTGVVLSCTITRDFTYNKVMPTFHHWQTGN--KKFGLTFQAAADARAFDQGVRNALQEYLH 72 (76)
Q Consensus 2 ~~~~~i~G~~l~D~~vvlnc~l~~~l~Yn~atp~FHqWr~~~--~~~GLnF~s~~eA~~F~~~v~~al~~l~~ 72 (76)
+++|||+|. +|++|+|||+|+++|+||+++|+||||++++ ++|||||+||+||++|..+|+++++.|..
T Consensus 42 ~~~yRIv~~--~~~~vv~n~~i~~~l~y~~a~p~FhqW~d~~~~~~~GLnF~s~~eA~~F~~~~~~~~~~l~~ 112 (120)
T 1ddw_A 42 RNVYRIISL--DGSKAIINSTITPNMTFTKTSQKFGQWADSRANTVYGLGFSSEHHLSKFAEKFQEFKEAARL 112 (120)
T ss_dssp TTEEEEEEE--ETTEEEEEEECCTTCCCEECSSSEEEEEETTTTEEEEEECSSHHHHHHHHHHHHHHHHHHC-
T ss_pred CCEEEEEEc--cCCEEEEeCEecCCcEEeeCCccccEEEcCCCcEEEEeccCCHHHHHHHHHHHHHHHHHHHH
Confidence 578999995 5999999999999999999999999999999 99999999999999999999999999864
No 7
>1i2h_A PSD-ZIP45(homer-1C/VESL-1L); enabled VAsp homology 1 domain, signaling protein; 1.80A {Rattus norvegicus} SCOP: b.55.1.4
Probab=99.95 E-value=9.3e-29 Score=170.85 Aligned_cols=69 Identities=17% Similarity=0.298 Sum_probs=65.5
Q ss_pred ceeEEEEeccccCCeEEEeEeeecCeEEeecCCceeeEeeCC--eEEEeecCCHHHHHHHHHHHHHHhhhhhc
Q psy11599 2 NIVGAWLGSEISFTGVVLSCTITRDFTYNKVMPTFHHWQTGN--KKFGLTFQAAADARAFDQGVRNALQEYLH 72 (76)
Q Consensus 2 ~~~~~i~G~~l~D~~vvlnc~l~~~l~Yn~atp~FHqWr~~~--~~~GLnF~s~~eA~~F~~~v~~al~~l~~ 72 (76)
+++|||+|+ +|++|+|||+|+++|+||+++|+||||++++ ++|||||+|++||++|..+|++|++.|..
T Consensus 47 rnsyRIvg~--~d~kvvinc~I~~~l~Y~kasp~FHqW~d~~~~~v~GLnF~Se~eA~~F~~~~~~ale~l~~ 117 (168)
T 1i2h_A 47 RNVYRIISL--DGSKAIINSTITPNMTFTKTSQKFGQWADSRANTVYGLGFSSEHHLSKFAEKFQEFKEAARL 117 (168)
T ss_dssp TTEEEEEEE--ETTEEEEEEECCTTCCEEEEETTEEEEEETTTTEEEEEEESSHHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEc--cCCEEEEecEecCCcEEeeCCcccceeecCCCcEEEEeccCCHHHHHHHHHHHHHHHHHHHH
Confidence 578999995 5999999999999999999999999999999 99999999999999999999999998863
No 8
>1qc6_A EVH1 domain from ENA/VAsp-like protein; AN incomplete seven stranded anti-parallel beta barrel closed by AN alpha helix, EVH1 domain; 2.60A {Mus musculus} SCOP: b.55.1.4
Probab=99.95 E-value=1.6e-28 Score=162.13 Aligned_cols=72 Identities=25% Similarity=0.494 Sum_probs=68.2
Q ss_pred ceeEEEEeccccCCeEEEeEeeecCeEEeecCCceeeEeeCCeEEEeecCCHHHHHHHHHHHHHHhhhhhcc
Q psy11599 2 NIVGAWLGSEISFTGVVLSCTITRDFTYNKVMPTFHHWQTGNKKFGLTFQAAADARAFDQGVRNALQEYLHD 73 (76)
Q Consensus 2 ~~~~~i~G~~l~D~~vvlnc~l~~~l~Yn~atp~FHqWr~~~~~~GLnF~s~~eA~~F~~~v~~al~~l~~g 73 (76)
+++|||+|++++|++|+|||+||++++||+++|+||||++++|+|||||+|++||+.|..+|.++|+.+.+.
T Consensus 44 ~~~~Riv~~~~~~~~vi~n~~i~~~~~y~~~~~~Fh~w~~~~~~~GL~F~se~eA~~F~~~~~~al~~~~~~ 115 (130)
T 1qc6_A 44 SSTFRVVGVKLQDQQVVINYSIVKGLKYNQATPTFHQWRDARQVYGLNFASKEEATTFSNAMLFALNIMNSQ 115 (130)
T ss_dssp TTEEEEEEECTTTCCEEEEEECCTTCEEEEEETTEEEEECSSCEEEEEESCHHHHHHHHHHHHHHHHHTC--
T ss_pred CcEEEEEEEeCCCCeEEEeeEEeCCcEEeccCCeeEEEEcCCEEEEEecCCHHHHHHHHHHHHHHHHHHhcC
Confidence 468999999999999999999999999999999999999999999999999999999999999999998743
No 9
>1mke_A WIP - N-WAsp, fusion protein consisting of wiskott-aldrich syndrome protein interacting protein...; polyproline, protein-protein complex; NMR {Rattus norvegicus} SCOP: b.55.1.4
Probab=99.82 E-value=1.7e-20 Score=127.67 Aligned_cols=66 Identities=17% Similarity=0.251 Sum_probs=60.6
Q ss_pred EEEEeccccCCeEEEeEeeecCeEEeecCCceeeEeeCCeEEEeecCCHHHHHHHHHHHHHHhhhhhc
Q psy11599 5 GAWLGSEISFTGVVLSCTITRDFTYNKVMPTFHHWQTGNKKFGLTFQAAADARAFDQGVRNALQEYLH 72 (76)
Q Consensus 5 ~~i~G~~l~D~~vvlnc~l~~~l~Yn~atp~FHqWr~~~~~~GLnF~s~~eA~~F~~~v~~al~~l~~ 72 (76)
+||+.. ++++++|||+||.+++|++++|+||+|++++|++||||++++||..|...|.++|+....
T Consensus 80 ~RlvDl--~~~~viweqELY~~f~Y~~~r~~FHtFe~d~c~~GLnFade~EA~~F~~~V~~~l~~~~~ 145 (152)
T 1mke_A 80 LRIFDI--KDGKLLWEQELYNNFVYNSPRGYFHTFAGDTCQVALNFANEEEAKKFRKAVTDLLGRRQR 145 (152)
T ss_dssp EEEECS--SSCSEEEEEECCSSCCCBCSSSSEEEEECSSSEEEEEESSHHHHHHHHHHHHHHHHHCC-
T ss_pred EEEEEc--cCCeEEEEeecccceeeccCCCeEEEEecCCcEEEEeeCCHHHHHHHHHHHHHHHHHHHh
Confidence 577765 578999999999999999999999999999999999999999999999999999987654
No 10
>2ifs_A N-WAsp, wiskott-aldrich syndrome protien ineracting protein and neural wiskott-aldrich syndrome...; verprolin, polyproline, protein- protein complex; NMR {Homo sapiens}
Probab=99.82 E-value=1.4e-20 Score=129.91 Aligned_cols=68 Identities=16% Similarity=0.247 Sum_probs=62.3
Q ss_pred eEEEEeccccCCeEEEeEeeecCeEEeecCCceeeEeeCCeEEEeecCCHHHHHHHHHHHHHHhhhhhcc
Q psy11599 4 VGAWLGSEISFTGVVLSCTITRDFTYNKVMPTFHHWQTGNKKFGLTFQAAADARAFDQGVRNALQEYLHD 73 (76)
Q Consensus 4 ~~~i~G~~l~D~~vvlnc~l~~~l~Yn~atp~FHqWr~~~~~~GLnF~s~~eA~~F~~~v~~al~~l~~g 73 (76)
-+||++. ++++|+|||+||.+++|++++|+||+|++++|++||||++++||..|...|..+|+.....
T Consensus 96 f~RlvDl--~~~~vvweqELY~~f~Y~~~r~~FHtFe~d~c~~GLnFade~EA~~F~~~V~~~l~~~~~~ 163 (169)
T 2ifs_A 96 FLRIFDI--KDGKLLWEQELYNNFVYNSPRGYFHTFAGDTCQVALNFANEEEAKKFRKAVTDLLGRRQRK 163 (169)
T ss_dssp EEEEEET--TTCCCCEEEECCSSCCCBCCCSSEEEEECSSSEEEEECSCHHHHHHHHHHHHHHHHHCSCC
T ss_pred EEEEEEc--cCCeEEEEeecccceeeccCCCeEEEeecCCcEEEEeeCCHHHHHHHHHHHHHHHHHHHhh
Confidence 3578876 4889999999999999999999999999999999999999999999999999999887543
No 11
>2crf_A RAN binding protein 3; RAN_BP1 domain, ranbp3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.55.1.3
Probab=98.85 E-value=1.7e-08 Score=67.70 Aligned_cols=68 Identities=9% Similarity=0.115 Sum_probs=57.8
Q ss_pred eeEEEEeccccCCeEEEeEeeecCeEEeecCCceeeEe--e----CCeEEEeecCCHHHHHHHHHHHHHHhhhhh
Q psy11599 3 IVGAWLGSEISFTGVVLSCTITRDFTYNKVMPTFHHWQ--T----GNKKFGLTFQAAADARAFDQGVRNALQEYL 71 (76)
Q Consensus 3 ~~~~i~G~~l~D~~vvlnc~l~~~l~Yn~atp~FHqWr--~----~~~~~GLnF~s~~eA~~F~~~v~~al~~l~ 71 (76)
..+||+.|+-+...|++|+.|+++|+|+++++.+++|. + .-+.|.|.|.++++|..|.. +.+.|..|.
T Consensus 67 ~k~RlvmR~d~~~kv~lN~~i~~~m~~~~~~~k~~~~~~~d~~d~~~~~~lirfk~~e~a~lf~~-~~e~i~~l~ 140 (150)
T 2crf_A 67 LQSRLVMRTQGSLRLILNTKLWAQMQIDKASEKSIHITAMDTEDQGVKVFLISASSKDTGQLYAA-LHHRILALR 140 (150)
T ss_dssp EEEEEEEEESSSCCEEEEEECCTTCCEECCSSSEEEEEEEBSSSCCEEEEEEECCHHHHHHHHHH-HHHHHHHHH
T ss_pred ccEEEEEEEcCcceEEeeeeccCCceeecCCCCEEEEEeecCCCCceEEEEEEECCHHHHHHHHH-HHHHHHHHH
Confidence 46999999999999999999999999999999999999 3 13469999999999999975 455555553
No 12
>3n7c_A ABR034WP; nuclear pore complex, NUP2, RAN-binding domain, nucleoporin, structural genomics, PSI-2, protein structure initiative; 2.26A {Ashbya gossypii} PDB: 3oan_A
Probab=98.82 E-value=1.7e-08 Score=66.40 Aligned_cols=70 Identities=19% Similarity=0.264 Sum_probs=59.5
Q ss_pred eeEEEEeccccCCeEEEeEeeecCeEEeecC---CceeeEee--CC--eEEEeecCCHHHHHHHHHHHHHHhhhhhc
Q psy11599 3 IVGAWLGSEISFTGVVLSCTITRDFTYNKVM---PTFHHWQT--GN--KKFGLTFQAAADARAFDQGVRNALQEYLH 72 (76)
Q Consensus 3 ~~~~i~G~~l~D~~vvlnc~l~~~l~Yn~at---p~FHqWr~--~~--~~~GLnF~s~~eA~~F~~~v~~al~~l~~ 72 (76)
..+||+.|+-+...|++|+.|+++++|.+.. +.|..|.+ +. ..|.|.|.|+++|+.|..+|+++...+++
T Consensus 48 ~k~RllmR~d~~~kv~lN~~i~~~m~~~~~~~~~~~~v~~~~~~dgk~~~~~lrfks~e~A~~f~~~iee~~~~~~~ 124 (130)
T 3n7c_A 48 GKVRVLCRSEGMGHVLLNTSVVKSFKYQPIDADNENLIKWPIITDGKLETFIIKVKQKADGRRLVGAVADAQQAMEG 124 (130)
T ss_dssp EEEEEEEEC-CCCCEEEEEECCTTBCCEESCTTCTTEEEEEEEETTEEEEEEEECSSHHHHHHHHHHHHHHHHHC--
T ss_pred CEEEEEEEecCCceEEeeccccCCcEEeEcCCCCccEEEEEecCCCceEEEEEEECCHHHHHHHHHHHHHHHhhhcc
Confidence 5799999998889999999999999999886 68999983 22 45999999999999999999999877654
No 13
>1xke_A RAN-binding protein 2; beta barrel, pleckstrin-homology (PH) domain, phosphotyrosine-binding (PTB) domain, protein transport; NMR {Homo sapiens} SCOP: b.55.1.3
Probab=98.66 E-value=1.4e-07 Score=61.71 Aligned_cols=71 Identities=17% Similarity=0.170 Sum_probs=59.0
Q ss_pred ceeEEEEeccccCCeEEEeEeeecCeEEeecCCcee--eEe-----eCC---eEEEeecCCHHHHHHHHHHHHHHhhhhh
Q psy11599 2 NIVGAWLGSEISFTGVVLSCTITRDFTYNKVMPTFH--HWQ-----TGN---KKFGLTFQAAADARAFDQGVRNALQEYL 71 (76)
Q Consensus 2 ~~~~~i~G~~l~D~~vvlnc~l~~~l~Yn~atp~FH--qWr-----~~~---~~~GLnF~s~~eA~~F~~~v~~al~~l~ 71 (76)
+..+||+.|+-+...|++|+.|+++++|+....... .|. +++ ..|.+.|.++++|..|..+++++.+.+.
T Consensus 43 ~~k~RlvmR~d~~~kv~lN~~i~~~m~~~~~~~s~~~~~~~~~d~~d~~~~~~~~~irfks~e~a~~f~~~~ee~k~~~~ 122 (130)
T 1xke_A 43 NGKLRMLMRREQVLKVCANHWITTTMNLKPLSGSDRAWMWLASDFSDGDAKLEQLAAKFKTPELAEEFKQKFEECQRLLL 122 (130)
T ss_dssp SSCEEEEEEETTTTEEEEEEECCTTSCEEECTTCSSCEEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHHHHHHHTT
T ss_pred CCeEEEEEEEcCCCeEEEecEeCCCcEEeecCCCCeEEEEEecccCCCCCceEEEEEEECCHHHHHHHHHHHHHHHHHhh
Confidence 357999999999999999999999999988655444 444 222 3599999999999999999999988775
Q ss_pred c
Q psy11599 72 H 72 (76)
Q Consensus 72 ~ 72 (76)
.
T Consensus 123 ~ 123 (130)
T 1xke_A 123 D 123 (130)
T ss_dssp T
T ss_pred c
Confidence 4
No 14
>2y8g_A Ranbp3-B, RAN-binding protein 3; protein transport, CRM1-mediated nuclear export; 1.61A {Homo sapiens} PDB: 2y8f_A
Probab=98.50 E-value=6.7e-07 Score=59.11 Aligned_cols=67 Identities=7% Similarity=0.062 Sum_probs=56.8
Q ss_pred eeEEEEeccccCCeEEEeEeeecCeEEeecCCceeeEee------CCeEEEeecCCHHHHHHHHHHHHHHhhhh
Q psy11599 3 IVGAWLGSEISFTGVVLSCTITRDFTYNKVMPTFHHWQT------GNKKFGLTFQAAADARAFDQGVRNALQEY 70 (76)
Q Consensus 3 ~~~~i~G~~l~D~~vvlnc~l~~~l~Yn~atp~FHqWr~------~~~~~GLnF~s~~eA~~F~~~v~~al~~l 70 (76)
..+||+.|+-+...|++|+.|+++++|+++++.+..|.. .-+.|.+.|.++++|..|.....+ +..|
T Consensus 55 ~k~RlvmR~d~~~kv~lN~~i~~~m~~~~~~~k~~~~~~~d~~d~~~~~~lirfk~~e~a~lf~~~~~~-i~~l 127 (138)
T 2y8g_A 55 LQSRLVMRTQGSLRLILNTKLWAQMQIDKASEKSIRITAMDTEDQGVKVFLISASSKDTGQLYAALHHR-ILAL 127 (138)
T ss_dssp EEEEEEEEETTTCCEEEEEECCTTCCEEEEETTEEEEECCC--CCCCCEEEEECCHHHHHHHHHHHHHH-HHHH
T ss_pred ccEEEEEEEcCcceEEEeeEecCCceeecCCCCEEEEEEecCCCCceEEEEEEECCHHHHHHHHHHHHH-HHHh
Confidence 569999999999999999999999999999999999983 235799999999999999755444 4343
No 15
>1rrp_B Nuclear pore complex protein NUP358; complex (small GTPase/nuclear protein), small GTPase, nuclear transport; HET: GNP; 2.96A {Homo sapiens} SCOP: b.55.1.3
Probab=98.45 E-value=2.7e-07 Score=60.47 Aligned_cols=66 Identities=12% Similarity=0.137 Sum_probs=53.9
Q ss_pred ceeEEEEeccccCCeEEEeEeeecCeEEeecCC--ceeeEee-----C---CeEEEeecCCHHHHHHHHHHHHHHh
Q psy11599 2 NIVGAWLGSEISFTGVVLSCTITRDFTYNKVMP--TFHHWQT-----G---NKKFGLTFQAAADARAFDQGVRNAL 67 (76)
Q Consensus 2 ~~~~~i~G~~l~D~~vvlnc~l~~~l~Yn~atp--~FHqWr~-----~---~~~~GLnF~s~~eA~~F~~~v~~al 67 (76)
+..+||+.|+-+.+.|++|+.|+++++|+.... ....|-. + -..|.+.|.++++|..|..++.+|-
T Consensus 57 ~~k~RlvmR~d~~~kv~lN~~i~~~m~~~~~~~s~~~~~~~~~d~~d~~~k~~~~~irfk~~e~A~~f~~~~~e~~ 132 (134)
T 1rrp_B 57 SGKIRLLMRREQVLKICANHYISPDMKLTPNAGSDRSFVWHALDYADELPKPEQLAIRFKTPEEAALFKCKFEEAQ 132 (134)
T ss_dssp SCCCEEEEECTTTCCEEECCBCCSSCCCBCSTTCTTEEEEEEEECTTSSCEEEEEEEECSSHHHHHHHHHHHHHTT
T ss_pred CCeEEEEEEEcCCCcEEEEeEecCCceEeecCCCCeEEEEEcccccCCCCceEEEEEEECCHHHHHHHHHHHHHHh
Confidence 357899999999999999999999999987654 4444432 2 2469999999999999999998763
No 16
>1k5d_B RAN-specific GTPase-activating protein; ranbp1, rangap, GAP, signal transduction, nuclear transport, GTP hydrolysis, ground state; HET: GNP; 2.70A {Homo sapiens} SCOP: b.55.1.3 PDB: 1k5g_B*
Probab=97.73 E-value=0.00014 Score=50.85 Aligned_cols=70 Identities=13% Similarity=0.072 Sum_probs=57.9
Q ss_pred ceeEEEEeccccCCeEEEeEeeecCeEEeec--CCceeeEe---e---CC---eEEEeecCCHHHHHHHHHHHHHHhhhh
Q psy11599 2 NIVGAWLGSEISFTGVVLSCTITRDFTYNKV--MPTFHHWQ---T---GN---KKFGLTFQAAADARAFDQGVRNALQEY 70 (76)
Q Consensus 2 ~~~~~i~G~~l~D~~vvlnc~l~~~l~Yn~a--tp~FHqWr---~---~~---~~~GLnF~s~~eA~~F~~~v~~al~~l 70 (76)
+..+||+-|+-+-..|++|+.|+++++|... ++....|- | ++ ..|.+.|.++++|..|...|.++.+.+
T Consensus 83 t~k~RlvMR~d~~~kV~LN~~I~~~m~~~~~~~s~ks~v~~~~~d~ad~~~k~e~~~iRfks~e~A~~f~~~~ee~k~~~ 162 (201)
T 1k5d_B 83 KGAIRLLMRRDKTLKICANHYITPMMELKPNAGSDRAWVWNTHADFADECPKPELLAIRFLNAENAQKFKTKFEECRKEI 162 (201)
T ss_dssp SCCEEEEEEETTTCCEEEEEECCSSCCCCBCSSCSSEEEEEEEEECTTSSCEEEEEEEECSSHHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEEECCcceEEEeeEecCCceeeecCCCCceEEEEeccccCCCCCceEEEEEEECCHHHHHHHHHHHHHHHHHH
Confidence 3578999999888999999999999999864 45566772 2 22 349999999999999999999998776
Q ss_pred h
Q psy11599 71 L 71 (76)
Q Consensus 71 ~ 71 (76)
.
T Consensus 163 ~ 163 (201)
T 1k5d_B 163 E 163 (201)
T ss_dssp H
T ss_pred H
Confidence 4
No 17
>4hat_B RAN-specific GTPase-activating protein 1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_B* 4hav_B* 4haw_B* 4hax_B* 4hay_B* 4haz_B* 4hb0_B* 4hb2_B* 4hb3_B* 4hb4_B* 4gmx_B* 4gpt_B*
Probab=97.22 E-value=0.0024 Score=42.20 Aligned_cols=69 Identities=12% Similarity=0.085 Sum_probs=54.8
Q ss_pred eeEEEEeccccCCeEEEeEeeecCeEEeecC--CceeeEe---e--CC----eEEEeecCCHHHHHHHHHHHHHHhhhhh
Q psy11599 3 IVGAWLGSEISFTGVVLSCTITRDFTYNKVM--PTFHHWQ---T--GN----KKFGLTFQAAADARAFDQGVRNALQEYL 71 (76)
Q Consensus 3 ~~~~i~G~~l~D~~vvlnc~l~~~l~Yn~at--p~FHqWr---~--~~----~~~GLnF~s~~eA~~F~~~v~~al~~l~ 71 (76)
..+||+-|+-+-..|++|..|.++++|.... +.--.|- | ++ ..|-+-|.++++|..|..++++|-+..+
T Consensus 59 ~k~RllmR~d~~~kv~lN~~i~~~m~~~~~~~s~k~~v~~~~~D~sdg~~~~~~~~iRfk~~e~A~~f~~~~ee~~~~n~ 138 (140)
T 4hat_B 59 NKVRILMRRDKTLKICANHIIAPEYTLKPNVGSDRSWVYACTADIAEGEAEAFTFAIRFGSKENADKFKEEFEKAQEINK 138 (140)
T ss_dssp CCEEEEEECTTTCCEEEEEECCTTCCCBCCTTCSSEEEEEEEEECTTSSCEEEEEEEEESSHHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEEEecCcceEEEEeEecCCeEEeEcCCCCceEEEEccccCCCCCCceEEEEEEECCHHHHHHHHHHHHHHHHHhc
Confidence 4689999987788899999999999998752 2333442 2 22 3599999999999999999999987654
No 18
>3m1i_B RAN-specific GTPase-activating protein 1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae}
Probab=97.06 E-value=0.0048 Score=42.91 Aligned_cols=69 Identities=12% Similarity=0.085 Sum_probs=55.0
Q ss_pred eeEEEEeccccCCeEEEeEeeecCeEEeecC--CceeeEe---e--CC----eEEEeecCCHHHHHHHHHHHHHHhhhhh
Q psy11599 3 IVGAWLGSEISFTGVVLSCTITRDFTYNKVM--PTFHHWQ---T--GN----KKFGLTFQAAADARAFDQGVRNALQEYL 71 (76)
Q Consensus 3 ~~~~i~G~~l~D~~vvlnc~l~~~l~Yn~at--p~FHqWr---~--~~----~~~GLnF~s~~eA~~F~~~v~~al~~l~ 71 (76)
..+||+-|+-+-..|++|..|+++|+|.... ..--.|- | ++ ..|-+-|.++++|..|...+.++-+.+.
T Consensus 110 ~k~RllMR~d~~~kV~LN~~I~~~m~~~~~~~sdks~v~~~~~D~sdge~k~e~~aIRFk~~E~A~eF~~~~eeaq~~nk 189 (191)
T 3m1i_B 110 NKVRILMRRDKTLKICANHIIAPEYTLKPNVGSDRSWVYACTADIAEGEAEAFTFAIRFGSKENADKFKEEFEKAQEINK 189 (191)
T ss_dssp CCEEEEEECTTTCCEEEEEECCTTCCCBCCTTCSSEEEEEEEEECTTSSCEEEEEEEECSSHHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEEEecCcceEEEeeecCCCcEEeECCCCCceEEEEecCcCCCCCcceEEEEEEECCHHHHHHHHHHHHHHHHHhh
Confidence 4689999987778899999999999998762 2333443 2 22 3699999999999999999999877654
No 19
>2ec1_A Nucleoporin 50 kDa; ranbp domain, nuclear pore-associated protein 60 kDa-like, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.48 E-value=0.0089 Score=38.52 Aligned_cols=65 Identities=8% Similarity=0.007 Sum_probs=49.9
Q ss_pred eeEEEEeccccC-CeEEEeEeeecCeEEeecC-CceeeEee-----CC------eEEEeecCCHHHHHHHHHHHHHHh
Q psy11599 3 IVGAWLGSEISF-TGVVLSCTITRDFTYNKVM-PTFHHWQT-----GN------KKFGLTFQAAADARAFDQGVRNAL 67 (76)
Q Consensus 3 ~~~~i~G~~l~D-~~vvlnc~l~~~l~Yn~at-p~FHqWr~-----~~------~~~GLnF~s~~eA~~F~~~v~~al 67 (76)
...||+=|+-+- +.|++|..|+++++|.... ....-|.. ++ ..|-|-|.++++|..|..++.++-
T Consensus 46 ~k~RllmR~d~~~~kv~lN~~i~~~m~~~~~g~~~~~~~~~~~~~~d~~~~~~~~~~~lrfk~~e~a~~f~~~~~e~k 123 (125)
T 2ec1_A 46 QKTQLLVRADTNLGNILLNVLIPPNMPCTRTGKNNVLIVCVPNPPIDEKNATMPVTMLIRVKTSEDADELHKILLEKK 123 (125)
T ss_dssp SSEEEEEEESSSSCCBSCCEECCSSCCEECCTTTEEEEEECCSSCSCSSSSSSCEEEEEECSSHHHHHHHHHHHHHHH
T ss_pred CcEEEEEEecCCCCEEEEeeEEcCCCeEEecCCCcEEEEEccCCcccCCCCCceEEEEEEECCHHHHHHHHHHHHHhh
Confidence 356888886553 6899999999999998762 34444543 22 369999999999999999998764
No 20
>2oqb_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase, transcriptional regulati activation domain; 1.69A {Rattus norvegicus}
Probab=93.59 E-value=0.79 Score=29.70 Aligned_cols=52 Identities=15% Similarity=0.240 Sum_probs=46.7
Q ss_pred CeEEEeEeeecCeEEeecCCceeeEeeCCeEEEeecCCHHHHHHHHHHHHHH
Q psy11599 15 TGVVLSCTITRDFTYNKVMPTFHHWQTGNKKFGLTFQAAADARAFDQGVRNA 66 (76)
Q Consensus 15 ~~vvlnc~l~~~l~Yn~atp~FHqWr~~~~~~GLnF~s~~eA~~F~~~v~~a 66 (76)
+..+.+|.|.++-.+-+.-+.-|-.--+.--.=|.|+|++|+..|...+..+
T Consensus 54 ~~~l~ef~V~~~TEc~rVGk~S~litlg~~slLl~Fas~~d~~~F~~~l~k~ 105 (117)
T 2oqb_A 54 DVCVFKCSVSRETECSRVGRQSFIITLGCNSVLIQFATPHDFCSFYNILKTC 105 (117)
T ss_dssp CCEEEEEEEETTSEEEEETTTEEEEEETTEEEEEECSSHHHHHHHHHHHHHH
T ss_pred CeEEEEEEecCCccceeecCeEEEEEECCcEEEEEeCCHHHHHHHHHHHHHH
Confidence 5689999999999999999999999988888889999999999999886654
No 21
>2jya_A AGR_C_3324P, uncharacterized protein ATU1810; protein with unknown function ATU1810, ontario centre for ST proteomics, OCSP; NMR {Agrobacterium tumefaciens str}
Probab=80.88 E-value=1.1 Score=28.39 Aligned_cols=20 Identities=30% Similarity=0.517 Sum_probs=17.1
Q ss_pred CeEEEeecCCHHHHHHHHHH
Q psy11599 43 NKKFGLTFQAAADARAFDQG 62 (76)
Q Consensus 43 ~~~~GLnF~s~~eA~~F~~~ 62 (76)
..++.|.|.|+|||-+|...
T Consensus 51 ~~qv~L~F~skE~AiayAek 70 (106)
T 2jya_A 51 KQQVKLTFETQEQAEAYAQR 70 (106)
T ss_dssp EEEEEEEESSHHHHHHHHHH
T ss_pred cccceEecCCHHHHHHHHHH
Confidence 35689999999999999864
No 22
>2qkl_A DCP1 protein, SPBC3B9.21 protein; protein-protein complex, hydrolase; 2.33A {Schizosaccharomyces pombe} PDB: 2qkm_A*
Probab=79.69 E-value=9.7 Score=24.37 Aligned_cols=47 Identities=17% Similarity=0.082 Sum_probs=36.6
Q ss_pred EeeecCeEEeecCCceeeEeeC-CeEEEeecCCHHHHHHHHHHHHHHhh
Q psy11599 21 CTITRDFTYNKVMPTFHHWQTG-NKKFGLTFQAAADARAFDQGVRNALQ 68 (76)
Q Consensus 21 c~l~~~l~Yn~atp~FHqWr~~-~~~~GLnF~s~~eA~~F~~~v~~al~ 68 (76)
-.|.+++.+....| |.-+|.+ ...||+=|-+++|.......+++.++
T Consensus 79 ~~i~~~~~~e~~~~-~l~~r~~~~~i~GiWf~~~~d~~~i~~~l~~ll~ 126 (127)
T 2qkl_A 79 LFINHPSNVHLVDR-YLIHRTENQHVVGLWMFDPNDMSRIFNIVKESLL 126 (127)
T ss_dssp EEECSGGGEEEETT-EEEEEETTTEEEEEEESSTHHHHHHHHHHHHHTC
T ss_pred EecCCCceEEEeCC-EEEEEcCCCcEEEEEEEchHHHHHHHHHHHHHHh
Confidence 46777777865554 6669975 56799999999999999888877664
No 23
>2lju_A Putative oxidoreductase; structural genomics, seattle structural GENO center for infectious disease, ssgcid; NMR {Ehrlichia chaffeensis}
Probab=72.61 E-value=1.2 Score=28.22 Aligned_cols=20 Identities=20% Similarity=0.278 Sum_probs=16.9
Q ss_pred CeEEEeecCCHHHHHHHHHH
Q psy11599 43 NKKFGLTFQAAADARAFDQG 62 (76)
Q Consensus 43 ~~~~GLnF~s~~eA~~F~~~ 62 (76)
..++.|.|.|+|+|-+|...
T Consensus 59 ~~qv~L~F~skE~AiayAek 78 (108)
T 2lju_A 59 KQQVCLSFTTRELAIAYAVA 78 (108)
T ss_dssp CCCSCEEESSHHHHHHHHHH
T ss_pred cccceEecCCHHHHHHHHHH
Confidence 34589999999999999864
No 24
>2lyd_A Decapping protein 1; DCP1, XRN1, transcription-protein binding complex; NMR {Drosophila melanogaster}
Probab=71.82 E-value=17 Score=23.35 Aligned_cols=47 Identities=17% Similarity=0.241 Sum_probs=36.7
Q ss_pred EeeecCeEEeecCCceeeEeeCC-eEEEeecCCHHHHHHHHHHHHHHhh
Q psy11599 21 CTITRDFTYNKVMPTFHHWQTGN-KKFGLTFQAAADARAFDQGVRNALQ 68 (76)
Q Consensus 21 c~l~~~l~Yn~atp~FHqWr~~~-~~~GLnF~s~~eA~~F~~~v~~al~ 68 (76)
-.|.+++.+...-| |.-+|.++ ..|||=|-+++|.......+.+.++
T Consensus 85 ~~l~~~~~~e~~~~-~li~r~~~~~I~GiWf~~~~d~~~i~~~l~~l~~ 132 (134)
T 2lyd_A 85 EPITGSLELQSQPP-FLLYRNERSRIRGFWFYNSEECDRISGLVNGLLK 132 (134)
T ss_dssp EECCSSCEEEEETT-EEEEEEGGGEEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred EEcCCCcEEEeeCC-EEEEECCCCcEEEEEecChHHHHHHHHHHHHHHh
Confidence 46788888865555 55789875 5699999999999998888777664
No 25
>3igm_B PF14_0633 protein; AP2 domain, specific transcription FA protein-DNA complex, transcription-DNA complex; 2.20A {Plasmodium falciparum}
Probab=66.14 E-value=19 Score=21.62 Aligned_cols=46 Identities=17% Similarity=0.213 Sum_probs=36.6
Q ss_pred ecCeEEeecCC-ceeeEeeCCeEEEeecCCH------HHHHHHHHHHHHHhhh
Q psy11599 24 TRDFTYNKVMP-TFHHWQTGNKKFGLTFQAA------ADARAFDQGVRNALQE 69 (76)
Q Consensus 24 ~~~l~Yn~atp-~FHqWr~~~~~~GLnF~s~------~eA~~F~~~v~~al~~ 69 (76)
++|+.||+-+. ..-+|.++..+.--.|..+ |+|+..+......||.
T Consensus 8 ~pGVsw~kR~~~WlA~W~e~g~rrsRtF~~k~yGf~~e~Ak~~AIef~k~le~ 60 (77)
T 3igm_B 8 YPGVSWNKRMCAWLAFFYDGASRRSRTFHPKHFNMDKEKARLAAVEFMKTVEN 60 (77)
T ss_dssp STTEEEETTTTEEEEEEEETTEEEEEEECCTTHHHHHHHHHHHHHHHHHHTCS
T ss_pred CCcEEeecCCceEEEEEecCCeEeeeeechhhcCcCHHHHHHHHHHHHHHHHh
Confidence 67888887765 6778999999999999888 6888877777777654
No 26
>4emo_A Sharpin; pleckstrin homology (PH) domain, lubac, SIPL1, linear ubiqui HOIL-1L, HOIP, protein binding; 2.00A {Homo sapiens}
Probab=66.05 E-value=21 Score=23.28 Aligned_cols=56 Identities=23% Similarity=0.265 Sum_probs=42.9
Q ss_pred eEEEeEeeecCeEEeecCCceeeEeeC---CeEEEeecCCHHHHHHHHHHHHHHhhhhhc
Q psy11599 16 GVVLSCTITRDFTYNKVMPTFHHWQTG---NKKFGLTFQAAADARAFDQGVRNALQEYLH 72 (76)
Q Consensus 16 ~vvlnc~l~~~l~Yn~atp~FHqWr~~---~~~~GLnF~s~~eA~~F~~~v~~al~~l~~ 72 (76)
.+.+|..| +.+.|+.-.|.=|.-+-. --.+.|+|.+++||+.....++.++.+-..
T Consensus 69 ~~~~Ew~L-eSV~ytvrgP~~hELqpp~~gpg~lsl~F~~~qeAQrWA~lv~~a~~e~~~ 127 (129)
T 4emo_A 69 AVNLEWPL-ESVSYTIRGPTQHELQPPPGGPGTLSMHFLNPQEAQRWAVLVRGATVEGQN 127 (129)
T ss_dssp SCCEEEEG-GGSEEEEEETTEEEEECCTTSSCCEEEEESSHHHHHHHHHHHHHHCC----
T ss_pred ceeeEeec-ceeEEEecCcccccccCCCCCCCeEEEeeCCHHHHHHHHHHHHhhhccccc
Confidence 45667775 489999999999999863 234999999999999999998888755433
No 27
>4e6z_A Apicoplast TIC22, putative; TIC complex, import protein, transport protein; 2.15A {Plasmodium falciparum 3D7}
Probab=48.91 E-value=23 Score=25.43 Aligned_cols=28 Identities=18% Similarity=0.127 Sum_probs=22.9
Q ss_pred eeCCeEEEeecCCHHHHHHHHHHHHHHh
Q psy11599 40 QTGNKKFGLTFQAAADARAFDQGVRNAL 67 (76)
Q Consensus 40 r~~~~~~GLnF~s~~eA~~F~~~v~~al 67 (76)
..++..+|+-|-|++||.+|...+..+-
T Consensus 93 ~~~~~~V~~fF~s~~DA~a~L~el~k~~ 120 (279)
T 4e6z_A 93 QENEKQVCYMFLCPYDAENMLNDMIKYN 120 (279)
T ss_dssp EETTEEEEEEESSHHHHHHHHHHHHHHC
T ss_pred cCCCCeEEEEECCHHHHHHHHHHHHhcc
Confidence 3567789999999999999987765543
No 28
>2bop_A Protein (E2); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 1.70A {Bovine papillomavirus type 1} SCOP: d.58.8.1 PDB: 1jjh_A
Probab=34.25 E-value=41 Score=20.07 Aligned_cols=35 Identities=20% Similarity=0.358 Sum_probs=27.0
Q ss_pred EEeecCCceeeEee--C-C----eEEEeecCCHHHHHHHHHHH
Q psy11599 28 TYNKVMPTFHHWQT--G-N----KKFGLTFQAAADARAFDQGV 63 (76)
Q Consensus 28 ~Yn~atp~FHqWr~--~-~----~~~GLnF~s~~eA~~F~~~v 63 (76)
-|...+-+| .|-+ + + .+.=+.|.|++.-+.|...|
T Consensus 27 lf~~~STTW-~w~~~~~~~~~g~armlv~F~s~~QR~~FL~tV 68 (85)
T 2bop_A 27 RYENCTTTW-FTVADNGAERQGQAQILITFGSPSQRQDFLKHV 68 (85)
T ss_dssp GCSEECCCE-EEECSSTTCEEEEEEEEEEESSHHHHHHHHHHS
T ss_pred cceeEccEE-EEeCCCCCCcCCccEEEEEECCHHHHHHHHhcC
Confidence 366778889 8875 2 2 25779999999999998765
No 29
>1qhk_A RNAse HI, protein (ribonuclease HI); ribonuclease HI N-terminal domain, hydrolase; NMR {Saccharomyces cerevisiae} SCOP: d.100.1.2
Probab=33.57 E-value=18 Score=19.13 Aligned_cols=13 Identities=23% Similarity=0.378 Sum_probs=10.9
Q ss_pred eecCCHHHHHHHH
Q psy11599 48 LTFQAAADARAFD 60 (76)
Q Consensus 48 LnF~s~~eA~~F~ 60 (76)
-.|.|.+||..|.
T Consensus 34 K~F~t~~eA~~~l 46 (47)
T 1qhk_A 34 KKFNSYEQAKSFL 46 (47)
T ss_dssp EEESCHHHHHHHH
T ss_pred CCCCCHHHHHHHh
Confidence 4689999999985
No 30
>4dm5_A Osmotically inducible lipoprotein OSME; unknown function; HET: MSE; 1.50A {Pseudomonas aeruginosa PAO1}
Probab=30.79 E-value=85 Score=19.63 Aligned_cols=41 Identities=17% Similarity=0.290 Sum_probs=35.4
Q ss_pred CeEEEeEeeecCeEEeecCCceeeEeeCCeEEEeecCCHHHHHH
Q psy11599 15 TGVVLSCTITRDFTYNKVMPTFHHWQTGNKKFGLTFQAAADARA 58 (76)
Q Consensus 15 ~~vvlnc~l~~~l~Yn~atp~FHqWr~~~~~~GLnF~s~~eA~~ 58 (76)
..+.+|-.|-++ ++..|+|=.|-+.+.+-+-.|+|=+|++.
T Consensus 50 ~GTC~nY~L~~d---g~~q~Y~VsFd~~GrV~~~GF~TC~e~d~ 90 (103)
T 4dm5_A 50 PGSCNSYILNKD---GQQQPFYVSFDGSGKVDGSGFLSCSELDR 90 (103)
T ss_dssp SSEEEEEEEEET---TEEEEEEEEECTTSBEEEEESSCHHHHHH
T ss_pred CceEeeEEeccC---CceeeEEEEECCCCCCcccchhhHHHhhc
Confidence 346778888777 79999999999999999999999998875
No 31
>2g18_A Phycocyanobilin:ferredoxin oxidoreductase; alpha-beta-alpha sandwich; 2.50A {Anabaena SP}
Probab=30.48 E-value=20 Score=25.36 Aligned_cols=27 Identities=26% Similarity=0.539 Sum_probs=20.3
Q ss_pred eEEEEeccccCCeEEEeEeeecCeEEeecCCce
Q psy11599 4 VGAWLGSEISFTGVVLSCTITRDFTYNKVMPTF 36 (76)
Q Consensus 4 ~~~i~G~~l~D~~vvlnc~l~~~l~Yn~atp~F 36 (76)
+..-.|..++ |+||++|+...|. -|+|
T Consensus 81 e~~~~G~~lq----VLn~V~fP~~~yD--LPiF 107 (253)
T 2g18_A 81 ELAKVGNMLD----ILHCVMFPRPEYD--LPMF 107 (253)
T ss_dssp EEEEETTTEE----EEEEEEEECTTSC--CCEE
T ss_pred hhhhcCCCcE----EEEEEEcCCCCCC--CCee
Confidence 3334466666 9999999999885 7777
No 32
>1u5d_A SKAP55, SRC kinase-associated phosphoprotein of 55 kDa; PH domain, signaling protein; 1.70A {Homo sapiens} SCOP: b.55.1.1
Probab=30.45 E-value=59 Score=17.85 Aligned_cols=28 Identities=18% Similarity=0.334 Sum_probs=24.3
Q ss_pred eEEEeecCCHHHHHHHHHHHHHHhhhhh
Q psy11599 44 KKFGLTFQAAADARAFDQGVRNALQEYL 71 (76)
Q Consensus 44 ~~~GLnF~s~~eA~~F~~~v~~al~~l~ 71 (76)
..|=|.-.|++|+..-..++..++..|.
T Consensus 81 r~~~l~a~s~~e~~~Wi~ai~~~i~~ls 108 (108)
T 1u5d_A 81 RTYEFTATSPAEARDWVDQISFLLKDLS 108 (108)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHHHHHC
T ss_pred cEEEEECCCHHHHHHHHHHHHHHHHhcC
Confidence 5577888999999999999999998763
No 33
>3bsu_A Ribonuclease H1, RNAse H1; RNAse H, RNA/DNA hybrid; HET: DNA 5IU; 2.10A {Homo sapiens}
Probab=29.11 E-value=28 Score=18.84 Aligned_cols=15 Identities=27% Similarity=0.346 Sum_probs=12.4
Q ss_pred eecCCHHHHHHHHHH
Q psy11599 48 LTFQAAADARAFDQG 62 (76)
Q Consensus 48 LnF~s~~eA~~F~~~ 62 (76)
-.|.+.+||..|...
T Consensus 36 K~F~t~~eA~~~l~~ 50 (53)
T 3bsu_A 36 KKFATEDEAWAFVRK 50 (53)
T ss_dssp EEESSHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHh
Confidence 468999999999753
No 34
>3fx7_A Putative uncharacterized protein; double helix, unknown function; 1.65A {Helicobacter pylori} SCOP: a.25.5.1 PDB: 2gts_A
Probab=25.99 E-value=62 Score=19.83 Aligned_cols=23 Identities=9% Similarity=0.018 Sum_probs=19.2
Q ss_pred cCCHHHHHHHHHHHHHHhhhhhc
Q psy11599 50 FQAAADARAFDQGVRNALQEYLH 72 (76)
Q Consensus 50 F~s~~eA~~F~~~v~~al~~l~~ 72 (76)
..+|+|++.|...+++-.+.|.+
T Consensus 5 ~~dpeElr~Fa~~L~~F~d~Lq~ 27 (94)
T 3fx7_A 5 QMDTEEVREFVGHLERFKELLRE 27 (94)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999888887753
No 35
>3izx_B Capsid protein VP1; cytoplasmic polyhedrosis virus, 3D reconstruction, cryoem, F model; 3.10A {Bombyx mori cypovirus 1} PDB: 3cnf_A 3iz3_B 3j17_B*
Probab=24.72 E-value=6 Score=34.17 Aligned_cols=62 Identities=8% Similarity=0.043 Sum_probs=46.3
Q ss_pred e-ccccCCeEEEeEeeecCeEEeecCCceeeEeeCC--e---EEEeecCCHHHHHHHHHHHHHHhhhhh
Q psy11599 9 G-SEISFTGVVLSCTITRDFTYNKVMPTFHHWQTGN--K---KFGLTFQAAADARAFDQGVRNALQEYL 71 (76)
Q Consensus 9 G-~~l~D~~vvlnc~l~~~l~Yn~atp~FHqWr~~~--~---~~GLnF~s~~eA~~F~~~v~~al~~l~ 71 (76)
| +.+.|+-+.|+|.|.+.+.|+...| ||++.+.. . ..-++++++.++-.=..++.+++..|.
T Consensus 747 g~rE~~d~lv~idT~IVWsLL~~~~~p-~~rq~G~g~D~v~~~~~i~~Pdp~~~l~~~~~i~q~~r~l~ 814 (1333)
T 3izx_B 747 RQGETVDGLTIIDTSIVWPILCQCTYP-LVRQSGKGVDAVSIMEEIVYPDPSTTLSQSLSVAQVLSKLT 814 (1333)
T ss_dssp CCCCCTTSCSSCCSCCHHHHHHHCBCS-SSCCC--------CCCCCCCCCTTHHHHHHHHHHHHHHHHT
T ss_pred hhhhhcCCeeeeehhhehhhhhCCCCh-hhhccccCCCccccceeeeCCCchHhhhhhHHHHHHHHhcc
Confidence 5 5667887779999999999977666 78887652 2 267899999998887788887776553
No 36
>2dn6_A KIAA0640 protein; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.23 E-value=1e+02 Score=17.20 Aligned_cols=32 Identities=9% Similarity=0.155 Sum_probs=27.9
Q ss_pred CCeEEEeecCCHHHHHHHHHHHHHHhhhhhcc
Q psy11599 42 GNKKFGLTFQAAADARAFDQGVRNALQEYLHD 73 (76)
Q Consensus 42 ~~~~~GLnF~s~~eA~~F~~~v~~al~~l~~g 73 (76)
.++.|=|...|++|+..-..++..++....++
T Consensus 77 ~~r~~~l~a~s~~e~~~Wi~ai~~~~~~~~~~ 108 (115)
T 2dn6_A 77 FDKTFEISASDKKKKQEWIQAIHSTIHLLKLG 108 (115)
T ss_dssp SSCEEEEECSSHHHHHHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEEcCCHHHHHHHHHHHHHHHHHHhcC
Confidence 45668888999999999999999999988766
No 37
>3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase, sulfur oxidation, thiol- disulfide oxidoreductase; HET: MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A*
Probab=23.38 E-value=95 Score=18.96 Aligned_cols=39 Identities=15% Similarity=0.158 Sum_probs=24.5
Q ss_pred ecCCceeeEeeCCeEEEeecCCHHHHHHHHHHHHHHhhhhh
Q psy11599 31 KVMPTFHHWQTGNKKFGLTFQAAADARAFDQGVRNALQEYL 71 (76)
Q Consensus 31 ~atp~FHqWr~~~~~~GLnF~s~~eA~~F~~~v~~al~~l~ 71 (76)
..+|+|--|+ +++..+- +...-.+..|...++.++..+.
T Consensus 75 ~g~PT~i~f~-~G~ev~R-i~G~~~~~~f~~~L~~~l~~~~ 113 (116)
T 3dml_A 75 TFTPTFVLMA-GDVESGR-LEGYPGEDFFWPMLARLIGQAE 113 (116)
T ss_dssp CSSSEEEEEE-TTEEEEE-EECCCCHHHHHHHHHHHHHHHC
T ss_pred CCCCEEEEEE-CCEEEee-ecCCCCHHHHHHHHHHHHhhcC
Confidence 4789999999 4443331 2223333568888888777654
No 38
>1tqz_A Necap1; endocytosis, structural genomics, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: b.55.1.11
Probab=22.10 E-value=91 Score=20.21 Aligned_cols=25 Identities=20% Similarity=0.407 Sum_probs=21.3
Q ss_pred EEeecCCHHHHHHHHHHHHHHhhhh
Q psy11599 46 FGLTFQAAADARAFDQGVRNALQEY 70 (76)
Q Consensus 46 ~GLnF~s~~eA~~F~~~v~~al~~l 70 (76)
.|+.|....||-.|..++.....-|
T Consensus 106 iGiGF~eR~dAFDF~vaLqd~~k~~ 130 (133)
T 1tqz_A 106 IGIGFTDRGDAFDFNVSLQDHFKWV 130 (133)
T ss_dssp EEEECSCHHHHHHHHHHHHHHHSCS
T ss_pred EeeeecccccccchHHHHHHHHHHH
Confidence 9999999999999998887765544
No 39
>2hpu_A NOSL protein; alpha beta topology, metal transport; NMR {Achromobacter cycloclastes} SCOP: d.357.1.1 PDB: 2hq3_A
Probab=21.49 E-value=54 Score=21.71 Aligned_cols=15 Identities=27% Similarity=0.428 Sum_probs=12.6
Q ss_pred eecCCHHHHHHHHHH
Q psy11599 48 LTFQAAADARAFDQG 62 (76)
Q Consensus 48 LnF~s~~eA~~F~~~ 62 (76)
+-|+++++|.+|...
T Consensus 115 ~pFa~k~dAe~Fa~~ 129 (175)
T 2hpu_A 115 VPFSSRDEAAAFVLA 129 (175)
T ss_dssp EEESCHHHHHHHHHH
T ss_pred cCcCCHHHHHHHHHH
Confidence 569999999999753
No 40
>3kxe_A Toxin protein PARE-1; complex, TA system, protein binding; 2.60A {Caulobacter crescentus NA1000}
Probab=21.29 E-value=77 Score=18.72 Aligned_cols=21 Identities=5% Similarity=0.210 Sum_probs=18.6
Q ss_pred CHHHHHHHHHHHHHHhhhhhc
Q psy11599 52 AAADARAFDQGVRNALQEYLH 72 (76)
Q Consensus 52 s~~eA~~F~~~v~~al~~l~~ 72 (76)
+++-|..|...+..+++.|..
T Consensus 40 ~~~~A~~~~~~I~~~i~~L~~ 60 (110)
T 3kxe_A 40 GVEQAADYARELQATIEMIAE 60 (110)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHH
Confidence 788999999999999998864
No 41
>2z0r_A Putative uncharacterized protein TTHA0547; alpha/beta protein, structural genomics, unknown function; 2.30A {Thermus thermophilus}
Probab=21.27 E-value=1.3e+02 Score=18.82 Aligned_cols=23 Identities=13% Similarity=0.040 Sum_probs=19.3
Q ss_pred eCCeEEEeecCCHHHHHHHHHHH
Q psy11599 41 TGNKKFGLTFQAAADARAFDQGV 63 (76)
Q Consensus 41 ~~~~~~GLnF~s~~eA~~F~~~v 63 (76)
.-+.++.|=|.|.+.|+.|...+
T Consensus 24 ~lg~rlAliwTs~~~A~~f~~~~ 46 (103)
T 2z0r_A 24 ALGERLSGIWTSRELAEAFLAHH 46 (103)
T ss_dssp ETTEEEEEEBSCHHHHHHHHHTS
T ss_pred ccCCceEEEEechHHHHHHHhhC
Confidence 34678999999999999998653
No 42
>3rcp_A Pleckstrin homology domain-containing family A ME; FAPP1, PH domain, lipid-binding, membrane, membrane protein; 1.90A {Homo sapiens} PDB: 2kcj_A
Probab=21.11 E-value=97 Score=17.08 Aligned_cols=32 Identities=9% Similarity=0.145 Sum_probs=27.4
Q ss_pred CeEEEeecCCHHHHHHHHHHHHHHhhhhhccC
Q psy11599 43 NKKFGLTFQAAADARAFDQGVRNALQEYLHDK 74 (76)
Q Consensus 43 ~~~~GLnF~s~~eA~~F~~~v~~al~~l~~g~ 74 (76)
+..|=|.-.|++|...-..++..|+..+.+..
T Consensus 68 ~r~~~l~a~s~~e~~~Wi~al~~a~~~~~~~~ 99 (103)
T 3rcp_A 68 EQHFYMKAVNAAERQRWLVALGSSKASLTDTR 99 (103)
T ss_dssp TEEEEEECSSHHHHHHHHHHHHTTSCCCCCCC
T ss_pred CCEEEEECCCHHHHHHHHHHHHHHHHhccCCC
Confidence 56788888999999999999999998876653
No 43
>3qwm_A Iqsec1, IQ motif and SEC7 domain-containing protein 1; structural genomics, structural genomics consortium, SGC; 2.39A {Homo sapiens}
Probab=20.11 E-value=1.4e+02 Score=19.31 Aligned_cols=26 Identities=15% Similarity=0.355 Sum_probs=22.8
Q ss_pred EEeecCCHHHHHHHHHHHHHHhhhhh
Q psy11599 46 FGLTFQAAADARAFDQGVRNALQEYL 71 (76)
Q Consensus 46 ~GLnF~s~~eA~~F~~~v~~al~~l~ 71 (76)
+=|+-+|++|-..|...+.++|++..
T Consensus 100 i~~~A~s~~ER~rwi~dL~esI~e~~ 125 (140)
T 3qwm_A 100 INFNAPNPQDRKKFTDDLRESIAEVQ 125 (140)
T ss_dssp EEEECSSHHHHHHHHHHHHHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHHH
Confidence 66777999999999999999997764
Done!