RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11599
(76 letters)
>2jp2_A Spred-2, sprouty-related, EVH1 domain-containing protein 2;
solution structure, structural genomics, structural
genomics consortium, SGC; NMR {Homo sapiens}
Length = 126
Score = 78.9 bits (194), Expect = 5e-21
Identities = 33/61 (54%), Positives = 42/61 (68%)
Query: 9 GSEISFTGVVLSCTITRDFTYNKVMPTFHHWQTGNKKFGLTFQAAADARAFDQGVRNALQ 68
G VVL C + +D Y K PTFHHW+ N+KFGLTFQ+ ADARAFD+GVR A++
Sbjct: 63 GERQKDKLVVLECYVRKDLVYTKANPTFHHWKVDNRKFGLTFQSPADARAFDRGVRKAIE 122
Query: 69 E 69
+
Sbjct: 123 D 123
>1xod_A Spred1; sprouty, EVH1, peptide-binding, signaling protein; 1.15A
{Xenopus tropicalis} SCOP: b.55.1.4 PDB: 1tj6_A
Length = 118
Score = 78.1 bits (192), Expect = 8e-21
Identities = 36/61 (59%), Positives = 46/61 (75%)
Query: 9 GSEISFTGVVLSCTITRDFTYNKVMPTFHHWQTGNKKFGLTFQAAADARAFDQGVRNALQ 68
G + VVL C + RD YNKV PTFHHW+ G+KKFGLTFQ+ ADARAFD+G+R A++
Sbjct: 54 GERLRDKTVVLECVLRRDLVYNKVTPTFHHWRIGDKKFGLTFQSPADARAFDRGIRRAIE 113
Query: 69 E 69
+
Sbjct: 114 D 114
>3syx_A Sprouty-related, EVH1 domain-containing protein 1; WH1 domain,
human sprouty-related, EVH1 domain-containing PR Q7Z699;
2.45A {Homo sapiens}
Length = 130
Score = 78.2 bits (192), Expect = 1e-20
Identities = 34/61 (55%), Positives = 45/61 (73%)
Query: 9 GSEISFTGVVLSCTITRDFTYNKVMPTFHHWQTGNKKFGLTFQAAADARAFDQGVRNALQ 68
G + VVL C + +D YNKV PTFHHW+ +KKFGLTFQ+ ADARAFD+G+R A++
Sbjct: 61 GERLRDKMVVLECMLKKDLIYNKVTPTFHHWKIDDKKFGLTFQSPADARAFDRGIRRAIE 120
Query: 69 E 69
+
Sbjct: 121 D 121
>1egx_A VAsp, vasodilator-stimulated phosphoprotein; EVH1, VAsp-ENA,
poly-proline-binding domain, signaling protein; NMR
{Homo sapiens} SCOP: b.55.1.4
Length = 115
Score = 75.9 bits (186), Expect = 5e-20
Identities = 20/55 (36%), Positives = 30/55 (54%)
Query: 15 TGVVLSCTITRDFTYNKVMPTFHHWQTGNKKFGLTFQAAADARAFDQGVRNALQE 69
VV++C I R YN+ P FH W+ + +GL F + DA F G+ +AL+
Sbjct: 58 QQVVINCAIVRGVKYNQATPNFHQWRDARQVWGLNFGSKEDAAQFAAGMASALEA 112
>1qc6_A EVH1 domain from ENA/VAsp-like protein; AN incomplete seven
stranded anti-parallel beta barrel closed by AN alpha
helix, EVH1 domain; 2.60A {Mus musculus} SCOP: b.55.1.4
Length = 130
Score = 70.1 bits (171), Expect = 1e-17
Identities = 18/61 (29%), Positives = 31/61 (50%)
Query: 9 GSEISFTGVVLSCTITRDFTYNKVMPTFHHWQTGNKKFGLTFQAAADARAFDQGVRNALQ 68
G ++ VV++ +I + YN+ PTFH W+ + +GL F + +A F + AL
Sbjct: 51 GVKLQDQQVVINYSIVKGLKYNQATPTFHQWRDARQVYGLNFASKEEATTFSNAMLFALN 110
Query: 69 E 69
Sbjct: 111 I 111
>1evh_A WH1 domain, protein (MENA EVH1 domain); molecular recognition,
actin dynamics, contractIle protein; 1.80A {Mus
musculus} SCOP: b.55.1.4 PDB: 2xqn_M 2iyb_A
Length = 112
Score = 66.9 bits (163), Expect = 2e-16
Identities = 18/55 (32%), Positives = 29/55 (52%)
Query: 15 TGVVLSCTITRDFTYNKVMPTFHHWQTGNKKFGLTFQAAADARAFDQGVRNALQE 69
VV++C I + YN+ TFH W+ + +GL F + DA F + +AL+
Sbjct: 56 HQVVINCAIPKGLKYNQATQTFHQWRDARQVYGLNFGSKEDANVFASAMMHALEV 110
>1i2h_A PSD-ZIP45(homer-1C/VESL-1L); enabled VAsp homology 1 domain,
signaling protein; 1.80A {Rattus norvegicus} SCOP:
b.55.1.4
Length = 168
Score = 56.0 bits (134), Expect = 9e-12
Identities = 12/54 (22%), Positives = 22/54 (40%), Gaps = 2/54 (3%)
Query: 17 VVLSCTITRDFTYNKVMPTFHHW--QTGNKKFGLTFQAAADARAFDQGVRNALQ 68
+++ TIT + T+ K F W N +GL F + F + + +
Sbjct: 60 AIINSTITPNMTFTKTSQKFGQWADSRANTVYGLGFSSEHHLSKFAEKFQEFKE 113
>1ddw_A GLGF-domain protein homer; pleckstrin homology domain fold,
signaling protein; 1.70A {Rattus norvegicus} SCOP:
b.55.1.4 PDB: 1ddv_A 2p8v_A 1i7a_A*
Length = 120
Score = 53.2 bits (127), Expect = 4e-11
Identities = 12/54 (22%), Positives = 22/54 (40%), Gaps = 2/54 (3%)
Query: 17 VVLSCTITRDFTYNKVMPTFHHW--QTGNKKFGLTFQAAADARAFDQGVRNALQ 68
+++ TIT + T+ K F W N +GL F + F + + +
Sbjct: 55 AIINSTITPNMTFTKTSQKFGQWADSRANTVYGLGFSSEHHLSKFAEKFQEFKE 108
>2ifs_A N-WAsp, wiskott-aldrich syndrome protien ineracting protein and
neural wiskott-aldrich syndrome...; verprolin,
polyproline, protein- protein complex; NMR {Homo
sapiens}
Length = 169
Score = 37.4 bits (86), Expect = 7e-05
Identities = 12/58 (20%), Positives = 22/58 (37%)
Query: 12 ISFTGVVLSCTITRDFTYNKVMPTFHHWQTGNKKFGLTFQAAADARAFDQGVRNALQE 69
I ++ + +F YN FH + + L F +A+ F + V + L
Sbjct: 102 IKDGKLLWEQELYNNFVYNSPRGYFHTFAGDTCQVALNFANEEEAKKFRKAVTDLLGR 159
>1mke_A WIP - N-WAsp, fusion protein consisting of wiskott-aldrich syndrome
protein interacting protein...; polyproline,
protein-protein complex; NMR {Rattus norvegicus} SCOP:
b.55.1.4
Length = 152
Score = 36.5 bits (84), Expect = 1e-04
Identities = 12/58 (20%), Positives = 22/58 (37%)
Query: 12 ISFTGVVLSCTITRDFTYNKVMPTFHHWQTGNKKFGLTFQAAADARAFDQGVRNALQE 69
I ++ + +F YN FH + + L F +A+ F + V + L
Sbjct: 85 IKDGKLLWEQELYNNFVYNSPRGYFHTFAGDTCQVALNFANEEEAKKFRKAVTDLLGR 142
>1zt2_A DNA primase small subunit; heterodimeric complex, replication,
transferase; HET: DNA; 3.33A {Sulfolobus solfataricus}
SCOP: d.264.1.1
Length = 330
Score = 25.6 bits (55), Expect = 1.9
Identities = 10/55 (18%), Positives = 18/55 (32%), Gaps = 5/55 (9%)
Query: 17 VVLSCTITRDFTYNKVMPTFHHWQTGNKKFGLTFQAAADARAFDQGVRNALQEYL 71
L + DF + +GN+ F + + D R + EY+
Sbjct: 154 RNLVEILEDDFGLKP-----KVYFSGNRGFHVQVDCYGNCALLDSDERKEIAEYV 203
>2onk_C Molybdate/tungstate ABC transporter, permease protein; membrane
protein; 3.10A {Archaeoglobus fulgidus} SCOP: f.58.1.1
Length = 284
Score = 25.1 bits (55), Expect = 2.2
Identities = 5/38 (13%), Positives = 16/38 (42%), Gaps = 3/38 (7%)
Query: 3 IVGAWLGSEISFT--GVVLSCT-ITRDFTYNKVMPTFH 37
++G++ + G+V++ ++ N+ F
Sbjct: 138 LIGSFSPLKFVDALPGIVVAMLFVSVPIYINQAKEGFA 175
>2oqb_A Histone-arginine methyltransferase CARM1; protein arginine
methyltransferase, transcriptional regulati activation
domain; 1.69A {Rattus norvegicus}
Length = 117
Score = 24.0 bits (51), Expect = 5.1
Identities = 8/50 (16%), Positives = 18/50 (36%)
Query: 17 VVLSCTITRDFTYNKVMPTFHHWQTGNKKFGLTFQAAADARAFDQGVRNA 66
V C+++R+ ++V G + F D +F ++
Sbjct: 56 CVFKCSVSRETECSRVGRQSFIITLGCNSVLIQFATPHDFCSFYNILKTC 105
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 24.2 bits (52), Expect = 5.7
Identities = 17/93 (18%), Positives = 29/93 (31%), Gaps = 29/93 (31%)
Query: 4 VGAWL-------------GSEISFTGVVL--------SCTITRDFTYNKVMPTFHHWQTG 42
+ WL IS + + + + FT ++ TG
Sbjct: 215 ILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLL-GFTPGELRSYLK-GATG 272
Query: 43 NKKFGL---TFQAAADA-RAFDQGVRNALQEYL 71
+ + GL A D+ +F VR A+ L
Sbjct: 273 HSQ-GLVTAVAIAETDSWESFFVSVRKAI-TVL 303
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.134 0.423
Gapped
Lambda K H
0.267 0.0543 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,228,780
Number of extensions: 56926
Number of successful extensions: 136
Number of sequences better than 10.0: 1
Number of HSP's gapped: 134
Number of HSP's successfully gapped: 15
Length of query: 76
Length of database: 6,701,793
Length adjustment: 45
Effective length of query: 31
Effective length of database: 5,445,348
Effective search space: 168805788
Effective search space used: 168805788
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (23.8 bits)