Query psy1160
Match_columns 121
No_of_seqs 117 out of 185
Neff 4.3
Searched_HMMs 29240
Date Fri Aug 16 22:48:24 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1160.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1160hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1w1n_A Phosphatidylinositol 3- 94.5 0.015 5.3E-07 33.3 1.5 27 72-98 6-32 (33)
2 2ckz_A DNA-directed RNA polyme 69.4 2.8 9.6E-05 31.1 2.5 64 18-81 51-156 (161)
3 3ayh_A DNA-directed RNA polyme 49.3 10 0.00036 26.9 2.5 61 20-82 50-131 (136)
4 3mtu_E Head morphogenesis prot 41.2 56 0.0019 21.8 4.9 44 27-72 12-55 (77)
5 3iv1_A Tumor susceptibility ge 34.5 50 0.0017 21.9 3.9 52 40-91 2-60 (78)
6 3ax2_A Mitochondrial import re 32.2 17 0.00059 23.7 1.2 19 11-30 43-61 (73)
7 3v6i_A V-type ATP synthase sub 27.6 63 0.0022 23.2 3.8 39 20-58 77-115 (187)
8 3uv5_A Transcription initiatio 26.9 21 0.00071 27.5 1.1 58 16-73 9-67 (265)
9 3nf2_A Putative polyprenyl syn 24.4 1.1E+02 0.0036 24.7 4.9 36 18-53 304-339 (352)
10 3ohw_B Phycobilisome LCM core- 22.8 63 0.0022 23.8 3.0 24 63-86 50-76 (148)
11 3osj_A Phycobilisome LCM core- 20.5 23 0.00079 26.2 0.2 25 62-86 48-75 (147)
12 2hsb_A Hypothetical UPF0332 pr 20.1 98 0.0034 20.2 3.3 28 72-99 2-29 (126)
13 1om2_A Protein (mitochondrial 20.0 27 0.00093 23.9 0.5 19 11-30 46-64 (95)
No 1
>1w1n_A Phosphatidylinositol 3-kinase TOR1; target of rapamycin, Ser/Thr kinase, redox-regulation, disulfide bond, transferase; NMR {Saccharomyces cerevisiae} PDB: 2kio_A 2kit_A
Probab=94.47 E-value=0.015 Score=33.28 Aligned_cols=27 Identities=26% Similarity=0.539 Sum_probs=24.9
Q ss_pred CchHHHHHHHHHHHHHHHHHHhhcCCC
Q psy1160 72 SGQIEEVIIQAENELLLARKMLNWKPW 98 (121)
Q Consensus 72 ~GqIEElI~qAe~EL~L~~kM~~wKpW 98 (121)
.|||++||.||-|--.|+....-|-||
T Consensus 6 ~~QV~~LI~~At~~~NL~~my~GW~p~ 32 (33)
T 1w1n_A 6 PEQVDKLIQQATSIERLCQHYIGWCPF 32 (33)
T ss_dssp THHHHHHHHHHHHHHHHHTTSCSCCTT
T ss_pred HHHHHHHHHHhcCHHHHHHHhhhcccC
Confidence 389999999999999999999888887
No 2
>2ckz_A DNA-directed RNA polymerase III 18 KD polypeptide; multiprotein complex, nucleotidyltransferase, nuclear protein, hypothetical protein; 3.2A {Saccharomyces cerevisiae}
Probab=69.36 E-value=2.8 Score=31.09 Aligned_cols=64 Identities=11% Similarity=0.243 Sum_probs=15.9
Q ss_pred hHHHHHHHHHHHHHHHhcCCC----------------------------CchHHHHHHHHHHHHHHHhhh----------
Q psy1160 18 PKHSLTVLYNKILRLLAKMPD----------------------------DAAYKKYTKEIVDTRIKVVQQ---------- 59 (121)
Q Consensus 18 pr~~L~~lY~~~L~~L~~iP~----------------------------~a~YR~~tE~it~~Rl~iV~~---------- 59 (121)
+++.|..+-..+++-|+..|. +...|+.++++-.++|.-.+.
T Consensus 51 ~~~~L~ti~~e~~~YL~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~i~~l~~~L~~~~Ltk~E~lqivNl~P~s 130 (161)
T 2ckz_A 51 NHPELQGITRNVVNYLSINKNFINQEDEGEERESSGAKDAEKSGISKMSDESFAELMTKLNSFKLFKAEKLQIVNQLPAN 130 (161)
T ss_dssp CCHHHHHHHHHHHHHHTC--------------------------------------------------------------
T ss_pred CCccHHHHHHHHHHHHHhCCccccccccccccccccccccccccccccCHHHHHHHHHHHHhcCCCHHHHHHHhccCCCC
Confidence 457899999999999998887 234455555555555432222
Q ss_pred ----ccCHHHHHHHhcCchHHHHHHH
Q psy1160 60 ----AKSIDEMETKIKSGQIEEVIIQ 81 (121)
Q Consensus 60 ----~~di~~iE~~i~~GqIEElI~q 81 (121)
..-|+..|+++...||+++|..
T Consensus 131 ~vel~~iIEe~e~Rfsee~ie~IL~i 156 (161)
T 2ckz_A 131 MVHLYSIVEECDARFDEKTIEEMLEI 156 (161)
T ss_dssp --------------------------
T ss_pred HHHHHHHHHhcccCCCHHHHHHHHHH
Confidence 1367889999999999998853
No 3
>3ayh_A DNA-directed RNA polymerase III subunit RPC9; transcription; 2.19A {Schizosaccharomyces pombe}
Probab=49.29 E-value=10 Score=26.91 Aligned_cols=61 Identities=15% Similarity=0.263 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHH-------------HHHhhhc--------cCHHHHHHHhcCchHHHH
Q psy1160 20 HSLTVLYNKILRLLAKMPDDAAYKKYTKEIVDTR-------------IKVVQQA--------KSIDEMETKIKSGQIEEV 78 (121)
Q Consensus 20 ~~L~~lY~~~L~~L~~iP~~a~YR~~tE~it~~R-------------l~iV~~~--------~di~~iE~~i~~GqIEEl 78 (121)
..|..+..++++-|+..|... .|+-|++.+.+ |.||.-- .-|+..|+++...||+++
T Consensus 50 ~~l~ti~~e~l~YL~~~p~~~--~q~~e~i~~l~~~L~~~~Ltk~E~LqivNl~P~t~vel~~iIEe~e~Rfsee~ie~I 127 (136)
T 3ayh_A 50 ENLRTIQFEILKYLSSQGNCE--GLTKERFLDCIAIFNEFELTKAEILVILNNKPSSVPELYACIEGIEERFKEEDIFKL 127 (136)
T ss_dssp HHHHHHHHHHHHHHHTTTCCT--TCCHHHHHHHHHTTTTTCCCHHHHHHHHHHCCCSHHHHHHHSTTHHHHHTTTTHHHH
T ss_pred chHHHHHHHHHHHHHhCCCcc--ccCHHHHHHHHHHHHhcCCCHHHHHHHhccCCCCHHHHHHHHHhcccCCCHHHHHHH
Confidence 568888889999999998775 23334443333 2222221 246778999999999999
Q ss_pred HHHH
Q psy1160 79 IIQA 82 (121)
Q Consensus 79 I~qA 82 (121)
|.--
T Consensus 128 L~~i 131 (136)
T 3ayh_A 128 VEKI 131 (136)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8643
No 4
>3mtu_E Head morphogenesis protein, tropomyosin alpha-1 C; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Bacillus phage PHI29}
Probab=41.17 E-value=56 Score=21.75 Aligned_cols=44 Identities=20% Similarity=0.308 Sum_probs=31.5
Q ss_pred HHHHHHHhcCCCCchHHHHHHHHHHHHHHHhhhccCHHHHHHHhcC
Q psy1160 27 NKILRLLAKMPDDAAYKKYTKEIVDTRIKVVQQAKSIDEMETKIKS 72 (121)
Q Consensus 27 ~~~L~~L~~iP~~a~YR~~tE~it~~Rl~iV~~~~di~~iE~~i~~ 72 (121)
..||++|-. |+-+ --.-||++-+-|.+-+--+..|..||++|-+
T Consensus 12 ~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~EKTIDDLEDkL~~ 55 (77)
T 3mtu_E 12 EDILNKLLD-PELA-QSERTEALQQLRVNYGSFVSEYNDLEEKVAH 55 (77)
T ss_dssp HHHHHHTTC-C----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcC-HHhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457777743 3322 2345899999999999989999999998853
No 5
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=34.54 E-value=50 Score=21.93 Aligned_cols=52 Identities=17% Similarity=0.319 Sum_probs=34.7
Q ss_pred chHHHHHHHHHHHHHHHh-hh----ccCHHHHHHHhcCch--HHHHHHHHHHHHHHHHH
Q psy1160 40 AAYKKYTKEIVDTRIKVV-QQ----AKSIDEMETKIKSGQ--IEEVIIQAENELLLARK 91 (121)
Q Consensus 40 a~YR~~tE~it~~Rl~iV-~~----~~di~~iE~~i~~Gq--IEElI~qAe~EL~L~~k 91 (121)
|..+.+||...+.|++=. .. -..+...++.|..|+ |+++|..-+.|-.-+++
T Consensus 2 ~SllSAVeDKLRrrl~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ 60 (78)
T 3iv1_A 2 SSLISAVSDKLRWRMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDK 60 (78)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 456777888777776522 11 146677788887775 78888887777665554
No 6
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=32.20 E-value=17 Score=23.71 Aligned_cols=19 Identities=26% Similarity=0.482 Sum_probs=13.7
Q ss_pred ccccCCChHHHHHHHHHHHH
Q psy1160 11 GLAVSPDPKHSLTVLYNKIL 30 (121)
Q Consensus 11 GL~V~p~pr~~L~~lY~~~L 30 (121)
.|.||++|.. |..+|++||
T Consensus 43 Al~Vc~qP~~-LL~i~q~tl 61 (73)
T 3ax2_A 43 AIAVCGQPQQ-LLQVLQQTL 61 (73)
T ss_dssp HHHTCSSCHH-HHHHHHHHS
T ss_pred HHHHcCCHHH-HHHHHHhhC
Confidence 4679999975 556677665
No 7
>3v6i_A V-type ATP synthase subunit E; peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_E 3j0j_J
Probab=27.60 E-value=63 Score=23.18 Aligned_cols=39 Identities=8% Similarity=0.272 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhh
Q psy1160 20 HSLTVLYNKILRLLAKMPDDAAYKKYTKEIVDTRIKVVQ 58 (121)
Q Consensus 20 ~~L~~lY~~~L~~L~~iP~~a~YR~~tE~it~~Rl~iV~ 58 (121)
..+..+|....+.|..|+.+..|......++..=+..+.
T Consensus 77 eli~~v~~~a~~~L~~~~~~~~Y~~~L~~Li~ea~~~l~ 115 (187)
T 3v6i_A 77 EVLEEVRRRVREALEALPQKPEWPEVVRKLALEALEALP 115 (187)
T ss_dssp HHHHHHHHHHHHHHHHGGGSTTHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHHHcC
Confidence 456778899999999999998899999999988655443
No 8
>3uv5_A Transcription initiation factor TFIID subunit 1; tandem bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A
Probab=26.85 E-value=21 Score=27.49 Aligned_cols=58 Identities=12% Similarity=0.381 Sum_probs=39.1
Q ss_pred CChHHHHHHHHHHHHHHHhcCCCCchHHHHHHH-HHHHHHHHhhhccCHHHHHHHhcCc
Q psy1160 16 PDPKHSLTVLYNKILRLLAKMPDDAAYKKYTKE-IVDTRIKVVQQAKSIDEMETKIKSG 73 (121)
Q Consensus 16 p~pr~~L~~lY~~~L~~L~~iP~~a~YR~~tE~-it~~Rl~iV~~~~di~~iE~~i~~G 73 (121)
.+|...|..++..+|+.|...|.+..+++-|.. ....=.++|+.-=|...|+++|..|
T Consensus 9 ~~~~~~l~~~l~~il~~l~~~~~~~~F~~pv~~~~~pdY~~iI~~PmdL~tI~~kl~~~ 67 (265)
T 3uv5_A 9 TDPMVTLSSILESIINDMRDLPNTYPFHTPVNAKVVKDYYKIITRPMDLQTLRENVRKR 67 (265)
T ss_dssp CCHHHHHHHHHHHHHHHHHTSTTCGGGTSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTT
T ss_pred cCcHHHHHHHHHHHHHHHHcCCCchhhhCCCChhhcCCHHHHhCCCCcHHHHHHHHHcC
Confidence 457889999999999999998888887764321 1222334554444666666666554
No 9
>3nf2_A Putative polyprenyl synthetase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; 2.20A {Streptomyces coelicolor}
Probab=24.42 E-value=1.1e+02 Score=24.72 Aligned_cols=36 Identities=6% Similarity=-0.054 Sum_probs=29.5
Q ss_pred hHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHH
Q psy1160 18 PKHSLTVLYNKILRLLAKMPDDAAYKKYTKEIVDTR 53 (121)
Q Consensus 18 pr~~L~~lY~~~L~~L~~iP~~a~YR~~tE~it~~R 53 (121)
.+........+.++.|..+|.++.+|+...+++.+-
T Consensus 304 a~~~a~~~~~~A~~~L~~lp~~~~~r~~L~~la~~~ 339 (352)
T 3nf2_A 304 TADEARRQHTIAIEALDAVDMPDRVRDRFTALADFV 339 (352)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHH
Confidence 355667778888999999999999999998888763
No 10
>3ohw_B Phycobilisome LCM core-membrane linker polypeptid; structural genomics, PSI-biology; 2.70A {Synechocystis SP}
Probab=22.81 E-value=63 Score=23.79 Aligned_cols=24 Identities=25% Similarity=0.490 Sum_probs=18.5
Q ss_pred HHHHHHHhcCch--HHHHHHH-HHHHH
Q psy1160 63 IDEMETKIKSGQ--IEEVIIQ-AENEL 86 (121)
Q Consensus 63 i~~iE~~i~~Gq--IEElI~q-Ae~EL 86 (121)
...+|.++..|+ |.|.|.. |+.|+
T Consensus 50 ~~~lESqlrnG~IsVReFVR~LakS~~ 76 (148)
T 3ohw_B 50 FTALESKLSNNEINVKEFIEGLGTSEL 76 (148)
T ss_dssp THHHHHHHHTTSSCHHHHHHHHHTSHH
T ss_pred cccHHHHHHcCCcCHHHHHHHHHcCHH
Confidence 368999999999 7888876 55554
No 11
>3osj_A Phycobilisome LCM core-membrane linker polypeptid; structural genomics, PSI-biology; 2.30A {Synechocystis SP} PDB: 2l06_A
Probab=20.46 E-value=23 Score=26.18 Aligned_cols=25 Identities=28% Similarity=0.603 Sum_probs=19.2
Q ss_pred CHHHHHHHhcCch--HHHHHHH-HHHHH
Q psy1160 62 SIDEMETKIKSGQ--IEEVIIQ-AENEL 86 (121)
Q Consensus 62 di~~iE~~i~~Gq--IEElI~q-Ae~EL 86 (121)
....+|.++..|+ |.|.|.. |+.|+
T Consensus 48 r~~~lESql~nG~ItVReFIR~LakS~~ 75 (147)
T 3osj_A 48 SISYLESQVRNGDISMKEFVRRLAKSPL 75 (147)
T ss_dssp HHHHHHHHHHHTSSCHHHHHHHHHHSHH
T ss_pred ccccHHHHHHcCCccHHHHHHHHHcCHH
Confidence 3568999999999 7888876 55554
No 12
>2hsb_A Hypothetical UPF0332 protein AF0298; DUF103 family, structural genomics, joint center for structu genomics, JCSG; HET: MSE PG4; 1.95A {Archaeoglobus fulgidus}
Probab=20.13 E-value=98 Score=20.21 Aligned_cols=28 Identities=25% Similarity=0.214 Sum_probs=22.1
Q ss_pred CchHHHHHHHHHHHHHHHHHHhhcCCCC
Q psy1160 72 SGQIEEVIIQAENELLLARKMLNWKPWE 99 (121)
Q Consensus 72 ~GqIEElI~qAe~EL~L~~kM~~wKpWE 99 (121)
.-.++..+.+|++-|.-|+.+++-..|.
T Consensus 2 ~~~~~~~l~~A~~~L~~A~~~~~~g~y~ 29 (126)
T 2hsb_A 2 MDELELRIRKAEKLVQDAKKEFEMGLYE 29 (126)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHCCCHH
Confidence 4567888999999999998888766554
No 13
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=20.02 E-value=27 Score=23.87 Aligned_cols=19 Identities=26% Similarity=0.482 Sum_probs=13.3
Q ss_pred ccccCCChHHHHHHHHHHHH
Q psy1160 11 GLAVSPDPKHSLTVLYNKIL 30 (121)
Q Consensus 11 GL~V~p~pr~~L~~lY~~~L 30 (121)
.|.||++|.. |..+|++||
T Consensus 46 Al~Vc~qP~~-LL~i~q~Tl 64 (95)
T 1om2_A 46 AIAVCGQPQQ-LLQVLQQTL 64 (95)
T ss_dssp HHHHHSCHHH-HHHHHHHHS
T ss_pred HHHHcCCHHH-HHHHHHhhC
Confidence 4679999975 555666654
Done!