Query psy1160
Match_columns 121
No_of_seqs 117 out of 185
Neff 4.3
Searched_HMMs 13730
Date Fri Aug 16 22:48:33 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1160.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/1160hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2dm9a1 d.81.4.1 (A:81-198) V- 28.2 32 0.0024 21.3 3.9 38 21-59 2-39 (118)
2 d1irqa_ a.43.1.4 (A:) Omega tr 27.0 30 0.0022 19.5 3.0 25 62-86 15-39 (48)
3 d1eqfa1 a.29.2.1 (A:1359-1497) 20.6 18 0.0013 23.7 1.3 59 16-74 21-80 (139)
4 d1nbfa_ d.3.1.9 (A:) Ubiquitin 17.9 18 0.0013 25.7 0.9 10 4-13 1-10 (347)
5 d2afpa_ d.169.1.1 (A:) Type II 17.9 45 0.0033 20.0 2.9 30 84-113 49-78 (129)
6 d1gq2a1 c.2.1.7 (A:280-580) Mi 17.7 49 0.0035 24.7 3.5 26 90-115 268-293 (298)
7 d1em2a_ d.129.3.2 (A:) Lipid t 16.2 52 0.0038 21.5 3.0 30 72-101 3-33 (214)
8 d1rdl1_ d.169.1.1 (1:) Mannose 15.1 26 0.0019 21.1 1.0 30 83-112 32-61 (111)
9 d2ao9a1 a.4.1.17 (A:13-132) Ph 14.5 38 0.0028 22.6 1.8 26 62-87 4-29 (120)
10 d1n08a_ b.43.5.1 (A:) Riboflav 14.0 32 0.0023 23.3 1.4 32 72-103 118-149 (154)
No 1
>d2dm9a1 d.81.4.1 (A:81-198) V-type ATP synthase subunit E {Pyrococcus horikoshii [TaxId: 53953]}
Probab=28.17 E-value=32 Score=21.26 Aligned_cols=38 Identities=21% Similarity=0.405 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhhh
Q psy1160 21 SLTVLYNKILRLLAKMPDDAAYKKYTKEIVDTRIKVVQQ 59 (121)
Q Consensus 21 ~L~~lY~~~L~~L~~iP~~a~YR~~tE~it~~Rl~iV~~ 59 (121)
.+..+|.+..+.|..++.+ .|++..+.++.+=+.-+.+
T Consensus 2 ~i~~v~~~a~~~l~~~~~~-~Y~~~L~~Li~~a~~~l~~ 39 (118)
T d2dm9a1 2 IISSVLEEVKRRLETMSED-EYFESVKALLKEAIKELNE 39 (118)
T ss_dssp HHHHHHHHHHHHHHHCCHH-HHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHccChh-HHHHHHHHHHHHHHHHhCC
Confidence 4678899999999999874 7999999998766554443
No 2
>d1irqa_ a.43.1.4 (A:) Omega transcriptional repressor {Streptococcus pyogenes [TaxId: 1314]}
Probab=27.03 E-value=30 Score=19.51 Aligned_cols=25 Identities=36% Similarity=0.436 Sum_probs=20.8
Q ss_pred CHHHHHHHhcCchHHHHHHHHHHHH
Q psy1160 62 SIDEMETKIKSGQIEEVIIQAENEL 86 (121)
Q Consensus 62 di~~iE~~i~~GqIEElI~qAe~EL 86 (121)
.|-+||..-++|.+.|+..||-.|.
T Consensus 15 hiikietaknggnvkevm~~~l~~~ 39 (48)
T d1irqa_ 15 HIIKIETAKNGGNVKEVMDQALEEY 39 (48)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred eeeEEEecccCCCHHHHHHHHHHHH
Confidence 3567899999999999999987653
No 3
>d1eqfa1 a.29.2.1 (A:1359-1497) TAFII250 double bromodomain module {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.55 E-value=18 Score=23.65 Aligned_cols=59 Identities=12% Similarity=0.365 Sum_probs=41.5
Q ss_pred CChHHHHHHHHHHHHHHHhcCCCCchHHHHHHH-HHHHHHHHhhhccCHHHHHHHhcCch
Q psy1160 16 PDPKHSLTVLYNKILRLLAKMPDDAAYKKYTKE-IVDTRIKVVQQAKSIDEMETKIKSGQ 74 (121)
Q Consensus 16 p~pr~~L~~lY~~~L~~L~~iP~~a~YR~~tE~-it~~Rl~iV~~~~di~~iE~~i~~Gq 74 (121)
.+|...|..+...+|+.|...|.+..++.-|-. ..-.=.++|..==|...|+++|..|.
T Consensus 21 ~~~~~~l~~~l~~il~~l~~~~~s~pF~~Pvd~~~~pdY~~iI~~PmdL~tI~~kl~~~~ 80 (139)
T d1eqfa1 21 TDPMVTLSSILESIINDMRDLPNTYPFHTPVNAKVVKDYYKIITRPMDLQTLRENVRKRL 80 (139)
T ss_dssp TCHHHHHHHHHHHHHHHHHTSTTCGGGTSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTC
T ss_pred cCHHHHHHHHHHHHHHHHHcCCCchhhhCCCChhhccCHHHHcCChhhHHHHHHHHHcCC
Confidence 357778999999999999999998888774321 11112334444448888888887775
No 4
>d1nbfa_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP) {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.94 E-value=18 Score=25.73 Aligned_cols=10 Identities=40% Similarity=0.723 Sum_probs=8.6
Q ss_pred cccccccccc
Q psy1160 4 EQTTGLTGLA 13 (121)
Q Consensus 4 K~tTGltGL~ 13 (121)
|+-||++||.
T Consensus 1 ~~~~G~vGL~ 10 (347)
T d1nbfa_ 1 KKHTGYVGLK 10 (347)
T ss_dssp CCSSSCCCBC
T ss_pred CCCCCCcCCe
Confidence 6789999996
No 5
>d2afpa_ d.169.1.1 (A:) Type II antifreeze protein {Sea raven (Hemitripterus americanus) [TaxId: 8094]}
Probab=17.93 E-value=45 Score=19.97 Aligned_cols=30 Identities=13% Similarity=0.262 Sum_probs=23.4
Q ss_pred HHHHHHHHHhhcCCCCcccCCCCCCCCCCC
Q psy1160 84 NELLLARKMLNWKPWEPLLKTSPPQQWVWP 113 (121)
Q Consensus 84 ~EL~L~~kM~~wKpWE~L~e~pp~~QW~wp 113 (121)
+|...+..+..-..|=.+.-....|.|.|-
T Consensus 49 ~e~~fl~~~~~~~~Wig~~~~~~~~~w~W~ 78 (129)
T d2afpa_ 49 EEHSFIQTLNAGVVWIGGSACLQAGAWTWS 78 (129)
T ss_dssp HHHHHHHHHCSSCBCCSCBCSSSSSCCBSS
T ss_pred hcchhhcccccCceeeeeecccccceeecc
Confidence 445566677777789888888999999993
No 6
>d1gq2a1 c.2.1.7 (A:280-580) Mitochondrial NAD(P)-dependent malic enzyme {Domestic pigeon (Columba livia) [TaxId: 8932]}
Probab=17.73 E-value=49 Score=24.74 Aligned_cols=26 Identities=8% Similarity=0.309 Sum_probs=21.6
Q ss_pred HHHhhcCCCCcccCCCCCCCCCCCCC
Q psy1160 90 RKMLNWKPWEPLLKTSPPQQWVWPPA 115 (121)
Q Consensus 90 ~kM~~wKpWE~L~e~pp~~QW~wp~~ 115 (121)
+..++.+-|+|-...=-+.+|+||..
T Consensus 268 ~~~i~~~~w~P~Y~~~~~~~y~~~~~ 293 (298)
T d1gq2a1 268 EAFIRSQVYSTDYNCFVADSYTWPEE 293 (298)
T ss_dssp HHHHHTTSCCCSCCCCSCCCCCCCSS
T ss_pred HHHHHHhcCCCcccCcCCccccCchh
Confidence 35677889999877778999999975
No 7
>d1em2a_ d.129.3.2 (A:) Lipid transport domain of Mln64 {Human (Homo sapiens) [TaxId: 9606]}
Probab=16.17 E-value=52 Score=21.49 Aligned_cols=30 Identities=23% Similarity=0.270 Sum_probs=24.4
Q ss_pred CchHHHHHHHHHHHHHHHHHHhh-cCCCCcc
Q psy1160 72 SGQIEEVIIQAENELLLARKMLN-WKPWEPL 101 (121)
Q Consensus 72 ~GqIEElI~qAe~EL~L~~kM~~-wKpWE~L 101 (121)
++|-+|.+.+|++.+..+..|+. -.-|+..
T Consensus 3 s~~~~~y~~~~~e~~~~~~~il~~~~~W~~~ 33 (214)
T d1em2a_ 3 SAQEREYIRQGKEATAVVDQILAQEENWKFE 33 (214)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTTGGGCEEE
T ss_pred cHHHHHHHHHHHHHHHHHHHHhhCCCCCeEE
Confidence 57899999999999999999974 3467643
No 8
>d1rdl1_ d.169.1.1 (1:) Mannose-binding protein A, C-lectin domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=15.07 E-value=26 Score=21.08 Aligned_cols=30 Identities=3% Similarity=-0.102 Sum_probs=23.6
Q ss_pred HHHHHHHHHHhhcCCCCcccCCCCCCCCCC
Q psy1160 83 ENELLLARKMLNWKPWEPLLKTSPPQQWVW 112 (121)
Q Consensus 83 e~EL~L~~kM~~wKpWE~L~e~pp~~QW~w 112 (121)
.+|...+..++.-..|=.|.....+|+|.|
T Consensus 32 ~~e~~~l~~~~~~~~WiGl~~~~~~~~~~w 61 (111)
T d1rdl1_ 32 AEENRAIQNVAKDVAFLGITDQRTENVFED 61 (111)
T ss_dssp HHHHHHHHHHCSSCEEEEEECSSSTTCCEE
T ss_pred HHHhHHHhhcccceeeEEeeecCccceeee
Confidence 345566677778888988887888899999
No 9
>d2ao9a1 a.4.1.17 (A:13-132) Phage protein BC1890 {Bacillus cereus [TaxId: 1396]}
Probab=14.52 E-value=38 Score=22.56 Aligned_cols=26 Identities=35% Similarity=0.618 Sum_probs=22.8
Q ss_pred CHHHHHHHhcCchHHHHHHHHHHHHH
Q psy1160 62 SIDEMETKIKSGQIEEVIIQAENELL 87 (121)
Q Consensus 62 di~~iE~~i~~GqIEElI~qAe~EL~ 87 (121)
.++++|.+++..|++-....|+||+.
T Consensus 4 ~~~el~~~L~~~q~~AA~~l~~Ne~~ 29 (120)
T d2ao9a1 4 KLDELKQKLTAKQIQAAYLLVENELM 29 (120)
T ss_dssp HHHHHHTTSCHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHhhHHHHHHHHHHhhchhc
Confidence 36789999999999999999999974
No 10
>d1n08a_ b.43.5.1 (A:) Riboflavin kinase {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}
Probab=13.98 E-value=32 Score=23.34 Aligned_cols=32 Identities=9% Similarity=0.232 Sum_probs=25.9
Q ss_pred CchHHHHHHHHHHHHHHHHHHhhcCCCCcccC
Q psy1160 72 SGQIEEVIIQAENELLLARKMLNWKPWEPLLK 103 (121)
Q Consensus 72 ~GqIEElI~qAe~EL~L~~kM~~wKpWE~L~e 103 (121)
..-+|+|+.|-+.....|+.+++--+|....+
T Consensus 118 F~s~e~L~~qI~~D~~~ar~~L~~~~~~~~~~ 149 (154)
T d1n08a_ 118 YAGLDKLIEDIHTDIRVALNSMDRPSYSSYKK 149 (154)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHTSHHHHGGGG
T ss_pred cCCHHHHHHHHHHHHHHHHHHHcChhHHhhcc
Confidence 35689999999999999999998776655443
Done!