RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1160
(121 letters)
>3rpw_A ABC transporter; structural genomics, PSI-biology, protein
structure initiati midwest center for structural
genomics, MCSG; HET: MSE; 1.65A {Rhodopseudomonas
palustris}
Length = 365
Score = 29.3 bits (66), Expect = 0.27
Identities = 15/93 (16%), Positives = 27/93 (29%), Gaps = 23/93 (24%)
Query: 38 DDAAYKKYTKEIVDTRIKVVQQ--AKSIDEMETKIKSGQI--------EEVIIQAENELL 87
Y + KE T IKVV A+S ++ + ++G+ ++ + L
Sbjct: 49 RKVMYDPFEKE---TGIKVVTVQEARSGPRIKAQAEAGKAQWDLTFIFDQETKLLGDCCL 105
Query: 88 L---ARKMLNWKPWEPLL-------KTSPPQQW 110
K+ K Q
Sbjct: 106 ADIDYSKLSESAHKTLAAMPDNLKRKKGVALQV 138
>2ibp_A Citrate synthase; disulfide bond, homodimer, thermophilic, C
transferase; 1.60A {Pyrobaculum aerophilum}
Length = 409
Score = 29.1 bits (66), Expect = 0.30
Identities = 10/39 (25%), Positives = 16/39 (41%)
Query: 4 EQTTGLTGLAVSPDPKHSLTVLYNKILRLLAKMPDDAAY 42
+ + L+V + Y +L+AKMP AY
Sbjct: 126 DNQKLIEALSVGRYKAEEKELAYRIAEKLVAKMPTIVAY 164
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE),
nitrogen-calcium coordination, BET propeller; HET: ME2
MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB:
1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A
2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A
2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Length = 314
Score = 28.9 bits (65), Expect = 0.34
Identities = 4/16 (25%), Positives = 5/16 (31%)
Query: 11 GLAVSPDPKHSLTVLY 26
G+AV L
Sbjct: 176 GIAVRHMNDGRPYQLI 191
>2ifc_A Citrate synthase; oxaloacetate, EC 2.3.3.1, transferase; 1.70A
{Thermoplasma acidophilum} PDB: 2r9e_A* 2r26_A*
Length = 385
Score = 28.7 bits (65), Expect = 0.40
Identities = 2/27 (7%), Positives = 7/27 (25%)
Query: 16 PDPKHSLTVLYNKILRLLAKMPDDAAY 42
K + + ++ +M
Sbjct: 112 TKFKWNKDTDRDVAAEMIGRMSAITVN 138
>3tqg_A 2-methylcitrate synthase; energy metabolism, transferase; 2.30A
{Coxiella burnetii}
Length = 375
Score = 28.6 bits (65), Expect = 0.44
Identities = 7/26 (26%), Positives = 11/26 (42%)
Query: 17 DPKHSLTVLYNKILRLLAKMPDDAAY 42
+P++ N RL+A P Y
Sbjct: 110 EPENGFENEQNIADRLVAIFPAIQCY 135
>2drw_A DAA, D-amino acid amidase; penicillin recognizing protein,
D-stereospecific, hydrophobic, hydrolase; 2.10A
{Ochrobactrum anthropi} SCOP: e.3.1.1 PDB: 2dns_A
2efu_A* 2efx_A*
Length = 363
Score = 27.4 bits (61), Expect = 1.1
Identities = 8/53 (15%), Positives = 22/53 (41%), Gaps = 5/53 (9%)
Query: 10 TGLAVSPDPKHSLTVLYNKILRLLAKMPDDAAYKKYTKEIVDTRIKVVQQAKS 62
+ + + +L ++ N ++ Y K E VD ++ ++ ++S
Sbjct: 316 SIMGRDEETGAALMLIQN-----SGAGDFESFYLKGVNEPVDRVLEAIKNSRS 363
>2c6x_A Citrate synthase 1; tricarboxylic acid cycle, transferase,
allosteric enzyme, enzyme thermostability; HET: COZ CIT;
3.4A {Bacillus subtilis}
Length = 363
Score = 27.5 bits (62), Expect = 1.2
Identities = 8/37 (21%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
Query: 20 HSLTVLYNKILRLLAKMPDDAAY-KKYTK--EIVDTR 53
++ + +RL+A P AY K++T+ + +
Sbjct: 105 YTFHPKTEEAIRLIAITPSIIAYRKRWTRGEQAIAPS 141
>1a99_A POTF, putrescine-binding protein; transport, periplasmic
putrescine binding protein (POTF); 2.20A {Escherichia
coli} SCOP: c.94.1.1
Length = 344
Score = 26.9 bits (60), Expect = 1.6
Identities = 11/37 (29%), Positives = 16/37 (43%), Gaps = 4/37 (10%)
Query: 38 DDAAYKKYTKEIVDTRIKVVQQA-KSIDEMETKIKSG 73
+ KE T IKVV S + +E K+ +G
Sbjct: 16 APDTVANFEKE---TGIKVVYDVFDSNEVLEGKLMAG 49
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 27.1 bits (59), Expect = 1.6
Identities = 15/109 (13%), Positives = 34/109 (31%), Gaps = 37/109 (33%)
Query: 26 YNKILRLLAKMPDDAAYKKYTKEIVDTRIKVVQQAKSIDEMETKIKSGQIEEVIIQAENE 85
Y IL + A+ + K VQ D ++ + +I+ II +++
Sbjct: 18 YKDILSVFED-----AFVD------NFDCKDVQ-----DMPKSILSKEEIDH-IIMSKDA 60
Query: 86 LLLARKMLNWKPWEPLLKTSPPQQ--------------WVWPPAKFTPQ 120
+ ++ W L + + ++ P K +
Sbjct: 61 VSGTLRLF-W-----TLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQR 103
>1aj8_A Citrate synthase; hyperthermostable, lyase; HET: COA CIT; 1.90A
{Pyrococcus furiosus} SCOP: a.103.1.1
Length = 371
Score = 27.1 bits (61), Expect = 1.7
Identities = 6/26 (23%), Positives = 11/26 (42%)
Query: 17 DPKHSLTVLYNKILRLLAKMPDDAAY 42
D + +Y + + AK+P A
Sbjct: 108 DIPVTPEEVYRIGISVTAKIPTIVAN 133
>3ttn_A Polyamine transport protein; polyamine binding protein,
spermidine; HET: SPD; 2.00A {Pseudomonas aeruginosa}
PDB: 3ttl_A*
Length = 340
Score = 26.9 bits (60), Expect = 1.9
Identities = 11/37 (29%), Positives = 16/37 (43%), Gaps = 4/37 (10%)
Query: 38 DDAAYKKYTKEIVDTRIKVVQQA-KSIDEMETKIKSG 73
K +TKE + I V S + +E K+ SG
Sbjct: 17 APTTLKDFTKE---SGIDVSYDVFDSNETLEGKLVSG 50
>1csh_A Citrate synthase; lyase(OXO-acid); HET: AMX; 1.65A {Gallus gallus}
SCOP: a.103.1.1 PDB: 1amz_A* 1csi_A* 1csr_A* 1css_A*
1al6_A* 6csc_A* 2cts_A* 3enj_A 1cts_A 4cts_A 1csc_A*
2csc_A* 3csc_A* 4csc_A* 5csc_A 5cts_A* 6cts_A* 5csc_B
Length = 435
Score = 26.9 bits (60), Expect = 1.9
Identities = 8/35 (22%), Positives = 15/35 (42%), Gaps = 2/35 (5%)
Query: 15 SPDPKHSLTVLYNKILRLLAKMPDDAA--YKKYTK 47
+ +Y + L+AK+P AA Y+ +
Sbjct: 159 GINRTKYWEFVYEDAMDLIAKLPCVAAKIYRNLYR 193
>3ttm_A Polyamine transport protein; polyamine binding, putrescine; 2.00A
{Pseudomonas aeruginosa} PDB: 3ttk_A
Length = 346
Score = 26.9 bits (60), Expect = 2.0
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 4/37 (10%)
Query: 38 DDAAYKKYTKEIVDTRIKVVQQA-KSIDEMETKIKSG 73
+K+TKE T IKVV S + +E K+ +G
Sbjct: 20 APDTLEKFTKE---TGIKVVYDVYDSNEVLEAKLLAG 53
>2v84_A Spermidine/putrescine ABC transporter, periplasmi binding
protein; polyamine binding, SYPH spermidine,
lipoprotein, transport protein; HET: MES; 1.78A
{Treponema pallidum}
Length = 343
Score = 26.5 bits (59), Expect = 2.1
Identities = 13/76 (17%), Positives = 27/76 (35%), Gaps = 16/76 (21%)
Query: 2 TSEQTTGLTGLAVSPDPKHSLTVLYN---KILRLLAKMPDDAAYKKYTKEIVDTRIKVVQ 58
++G+ G + L + YN + KK+ ++ ++VV
Sbjct: 7 HHHHSSGIEGRGRLQTRQDVLYL-YNWTYYT--------PTSLIKKFEQQ---YNVQVVY 54
Query: 59 QA-KSIDEMETKIKSG 73
S ++M K+ G
Sbjct: 55 DDYASNEDMFAKLSIG 70
>3ckd_A Invasion plasmid antigen, secreted by the MXI-SPA machinery; E3
ubiquitin ligase, helical, type III effector, structural
PSI-2; 2.65A {Shigella flexneri 2a str} PDB: 3l3p_A
Length = 312
Score = 26.7 bits (58), Expect = 2.2
Identities = 8/41 (19%), Positives = 16/41 (39%)
Query: 77 EVIIQAENELLLARKMLNWKPWEPLLKTSPPQQWVWPPAKF 117
E ++++ E W PW +LK + +W +
Sbjct: 207 EAMVRSREENEFTDWFSLWGPWHAVLKRTEADRWAQAEEQK 247
>1vgp_A 373AA long hypothetical citrate synthase; open form, transferase;
2.70A {Sulfolobus tokodaii}
Length = 373
Score = 26.7 bits (60), Expect = 2.2
Identities = 5/26 (19%), Positives = 12/26 (46%), Gaps = 4/26 (15%)
Query: 17 DPKHSLTVLYNKILRLLAKMPDDAAY 42
+ + + K ++L++K P A
Sbjct: 109 NDERT----DIKGIKLISKFPTIVAN 130
>1iom_A Citrate synthase; open form, riken structural genomics/proteomics
in RSGI, structural genomics, lyase; 1.50A {Thermus
thermophilus} SCOP: a.103.1.1 PDB: 1ixe_A*
Length = 377
Score = 26.7 bits (60), Expect = 2.3
Identities = 9/23 (39%), Positives = 10/23 (43%)
Query: 20 HSLTVLYNKILRLLAKMPDDAAY 42
S LY K L L+AK A
Sbjct: 112 ISREALYEKGLDLIAKFATIVAA 134
>1o7x_A Citrate synthase; lyase, tricarboxylic acid cycle; 2.7A {Sulfolobus
solfataricus} SCOP: a.103.1.1
Length = 377
Score = 26.3 bits (59), Expect = 2.4
Identities = 6/27 (22%), Positives = 10/27 (37%), Gaps = 1/27 (3%)
Query: 16 PDPKHSLTVLYNKILRLLAKMPDDAAY 42
+ K K + ++AKM A
Sbjct: 108 KNFK-WKENDKEKAISIIAKMATLVAN 133
>4eqb_A Spermidine/putrescine ABC superfamily ATP binding transporter,
binding protein; structural genomics, niaid; HET: EPE;
1.50A {Streptococcus pneumoniae TCH8431}
Length = 330
Score = 26.4 bits (59), Expect = 2.5
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 4/37 (10%)
Query: 38 DDAAYKKYTKEIVDTRIKVVQQA-KSIDEMETKIKSG 73
D ++T+E T I+V + S + M TKIK G
Sbjct: 21 DPELLTQFTEE---TGIQVQYETFDSNEAMYTKIKQG 54
>4akk_A Nitrate regulatory protein; transcription; 2.14A {Klebsiella
oxytoca}
Length = 423
Score = 26.4 bits (57), Expect = 2.8
Identities = 7/39 (17%), Positives = 21/39 (53%)
Query: 29 ILRLLAKMPDDAAYKKYTKEIVDTRIKVVQQAKSIDEME 67
+L M ++ A++ K +D ++V+ A+++ ++
Sbjct: 376 VLMTYQGMQEEQAWQALRKMAMDKNQRMVEIARALLTVK 414
>1pot_A POTD, spermidine/putrescine-binding protein; polyamine transport
protein; HET: SPD; 1.80A {Escherichia coli} SCOP:
c.94.1.1 PDB: 1poy_1*
Length = 325
Score = 26.4 bits (59), Expect = 2.8
Identities = 11/37 (29%), Positives = 19/37 (51%), Gaps = 4/37 (10%)
Query: 38 DDAAYKKYTKEIVDTRIKVVQQA-KSIDEMETKIKSG 73
+++TKE T IKV+ +S + M K+K+
Sbjct: 16 PPGLLEQFTKE---TGIKVIYSTYESNETMYAKLKTY 49
>3o8j_A 2-methylcitrate synthase; short chain fatty acids, propionate
metabolism, 2-methylcitr cycle, PRPC or 2-MCS, GLTA or
CS, 2-methy synthase; 2.41A {Salmonella enterica}
Length = 404
Score = 26.4 bits (59), Expect = 2.8
Identities = 5/23 (21%), Positives = 11/23 (47%)
Query: 20 HSLTVLYNKILRLLAKMPDDAAY 42
H+++ + +LLA + Y
Sbjct: 142 HTVSGARDIADKLLASLSSILLY 164
>3hwk_A Methylcitrate synthase; niaid, ssgcid, structural genomics, seattle
structural genomics center for infectious disease,
tubercluosis; 2.30A {Mycobacterium tuberculosis}
Length = 414
Score = 26.4 bits (59), Expect = 3.0
Identities = 5/17 (29%), Positives = 9/17 (52%)
Query: 26 YNKILRLLAKMPDDAAY 42
K +R++A +P A
Sbjct: 162 RAKAMRMMAVLPTIVAI 178
>1vgm_A 378AA long hypothetical citrate synthase; open form, transferase;
2.00A {Sulfolobus tokodaii}
Length = 378
Score = 26.0 bits (58), Expect = 3.1
Identities = 6/26 (23%), Positives = 11/26 (42%)
Query: 17 DPKHSLTVLYNKILRLLAKMPDDAAY 42
DPK + ++++AK A
Sbjct: 109 DPKWNRATNKELAVQIIAKTATITAN 134
>1a59_A Citrate synthase; cold-activity; HET: COA CIT; 2.09A {Antarctic
bacterium ds2-3r} SCOP: a.103.1.1
Length = 378
Score = 26.0 bits (58), Expect = 3.4
Identities = 8/23 (34%), Positives = 9/23 (39%)
Query: 20 HSLTVLYNKILRLLAKMPDDAAY 42
S K + LLA P AY
Sbjct: 114 SSPEANLEKAMSLLATFPSVVAY 136
>3l96_A Citrate synthase; quaternary, hexamer, GRAM-negative bacteri
allostery, oxaloacetate, acetylcoa, NADH, allosteric
enzyme transferase; 1.90A {Escherichia coli} PDB:
3l97_A* 3l98_A* 3l99_A 1k3p_A 1nxe_A 1nxg_A* 1owb_A*
1owc_A 4e6y_A
Length = 426
Score = 25.7 bits (57), Expect = 3.9
Identities = 10/26 (38%), Positives = 13/26 (50%), Gaps = 4/26 (15%)
Query: 17 DPKHSLTVLYNKILRLLAKMPDDAAY 42
+P+H RLL+KMP AA
Sbjct: 153 NPRH----REIAAFRLLSKMPTMAAM 174
>4edp_A ABC transporter, substrate-binding protein; clostridium PERF ATCC
13124, center for structural genomics of infectious DI
csgid; 1.85A {Clostridium perfringens}
Length = 351
Score = 25.8 bits (57), Expect = 4.0
Identities = 3/37 (8%), Positives = 14/37 (37%), Gaps = 4/37 (10%)
Query: 38 DDAAYKKYTKEIVDTRIKVVQQA-KSIDEMETKIKSG 73
+ ++ + KE +++V + + + +
Sbjct: 50 KETVFEPFAKE---HGVEIVLDIGNNSERLTKMKNNP 83
>2p2w_A Citrate synthase; transferase, structural genomics, NPPSFA,
national project O structural and functional analyses;
HET: FLC; 1.90A {Thermotoga maritima}
Length = 367
Score = 25.9 bits (58), Expect = 4.0
Identities = 5/17 (29%), Positives = 8/17 (47%)
Query: 26 YNKILRLLAKMPDDAAY 42
K +R+ + P AY
Sbjct: 112 REKAIRVASVFPTILAY 128
>2coi_A Branched chain aminotransferase 1, cytosolic; PLP-dependent enzyme;
HET: PLP GBN; 1.90A {Homo sapiens} PDB: 2cog_A* 2coj_A*
2abj_A*
Length = 386
Score = 25.7 bits (57), Expect = 4.3
Identities = 5/26 (19%), Positives = 16/26 (61%)
Query: 53 RIKVVQQAKSIDEMETKIKSGQIEEV 78
KV ++ ++D++ T ++ ++ E+
Sbjct: 303 EFKVSERYLTMDDLTTALEGNRVREM 328
>1t2a_A GDP-mannose 4,6 dehydratase; structural genomics consortium,
rossman-fold, short-chain dehydrogenase/reductase, SDR,
structural genomics,lyase; HET: NDP GDP; 1.84A {Homo
sapiens} SCOP: c.2.1.2
Length = 375
Score = 25.7 bits (57), Expect = 4.4
Identities = 19/88 (21%), Positives = 37/88 (42%), Gaps = 25/88 (28%)
Query: 32 LLAKMPDD---AAYKKYT-KEIVDTR-----IKVVQQAKSIDEMETKIKSGQIEEVIIQ- 81
L P+D A + ++ +E V+ +V + K+ +E+ ++G+ V +
Sbjct: 264 LQNDEPEDFVIATGEVHSVREFVEKSFLHIGKTIVWEGKNENEVGRCKETGK---VHVTV 320
Query: 82 -------AENELLL-----ARKMLNWKP 97
E + L A++ LNWKP
Sbjct: 321 DLKYYRPTEVDFLQGDCTKAKQKLNWKP 348
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold,
ligase; 2.80A {Shigella flexneri 2A}
Length = 571
Score = 25.7 bits (56), Expect = 4.4
Identities = 8/37 (21%), Positives = 16/37 (43%)
Query: 74 QIEEVIIQAENELLLARKMLNWKPWEPLLKTSPPQQW 110
+ E ++++ E W PW +LK + +W
Sbjct: 462 RTAEAMVRSREENEFTDWFSLWGPWHAVLKRTEADRW 498
>2h12_A Citrate synthase; acidophIle, acetic acid resistance, allostery,
transferase; HET: CMX; 1.85A {Acetobacter aceti}
Length = 436
Score = 25.7 bits (57), Expect = 4.5
Identities = 8/26 (30%), Positives = 13/26 (50%), Gaps = 4/26 (15%)
Query: 17 DPKHSLTVLYNKILRLLAKMPDDAAY 42
P + +RL+AK+P AA+
Sbjct: 161 IPAN----RDLAAMRLIAKIPTIAAW 182
>2a1h_A Branched chain aminotransferase; fold type IV; HET: PLP GBN; 1.80A
{Homo sapiens} SCOP: e.17.1.1 PDB: 1ekp_A* 1ekv_A*
1ekf_A* 1kta_A* 1kt8_A* 2hhf_B* 2hhf_A* 2hgw_A* 2hg8_A*
2hgx_A* 2hdk_A*
Length = 365
Score = 25.6 bits (57), Expect = 4.6
Identities = 5/26 (19%), Positives = 16/26 (61%)
Query: 53 RIKVVQQAKSIDEMETKIKSGQIEEV 78
+VV++ ++ ++ ++ G++ EV
Sbjct: 283 EFRVVERTITMKQLLRALEEGRVREV 308
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 25.5 bits (55), Expect = 4.9
Identities = 7/29 (24%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Query: 58 QQAKSIDEMETKIKSGQIEEVIIQAENEL 86
+Q K + E++ K +E +A+ +L
Sbjct: 93 EQRKRLQELDAASKV-MEQEWREKAKKDL 120
>2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase,
lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A
{Aquifex aeolicus} PDB: 2z95_A*
Length = 345
Score = 25.6 bits (57), Expect = 5.2
Identities = 14/57 (24%), Positives = 24/57 (42%), Gaps = 16/57 (28%)
Query: 54 IKVVQQAKSIDEMETKIKSGQIEEVIIQ--------AENELLL-----ARKMLNWKP 97
+ + I+E +G+ VI++ AE ++L+ A K L WKP
Sbjct: 266 FDIEWVGEGINEKGIDRNTGK---VIVEVSEEFFRPAEVDILVGNPEKAMKKLGWKP 319
>3msu_A Citrate synthase; helix bundle, APHA-beta fold, csgid, center for
structural G of infectious diseases, transferase; HET:
OAA; 1.84A {Francisella tularensis}
Length = 427
Score = 25.7 bits (57), Expect = 5.2
Identities = 4/27 (14%), Positives = 7/27 (25%), Gaps = 1/27 (3%)
Query: 16 PDPKHSLTVLYNKILRLLAKMPDDAAY 42
++AK+ AA
Sbjct: 155 IHN-GQKESQDEVAKNIVAKIATIAAM 180
>3dth_A Branched-chain amino acid aminotransferase; open twisted
alpha/beta; HET: PLP OBZ; 1.85A {Mycobacterium
smegmatis} PDB: 3dtf_A* 3dtg_A* 3jz6_A* 3ht5_A*
Length = 372
Score = 24.9 bits (55), Expect = 8.4
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 54 IKVVQQAKSIDEMETKIKSGQIEEV 78
V ++ +DE + K +G+I EV
Sbjct: 289 FAVEERKIDVDEWQKKAGAGEITEV 313
>1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase,
rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas
aeruginosa} SCOP: c.2.1.2
Length = 335
Score = 24.8 bits (55), Expect = 8.8
Identities = 9/21 (42%), Positives = 14/21 (66%), Gaps = 5/21 (23%)
Query: 82 AENELLL-----ARKMLNWKP 97
AE ++LL A+++L WKP
Sbjct: 293 AEVDVLLGNPAKAQRVLGWKP 313
>1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain
dehydrogenase/reductase, LYA; HET: NDP GDP; 1.80A
{Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1n7g_A*
Length = 381
Score = 25.0 bits (55), Expect = 9.4
Identities = 8/21 (38%), Positives = 12/21 (57%), Gaps = 5/21 (23%)
Query: 82 AENELLL-----ARKMLNWKP 97
AE + L A+++L WKP
Sbjct: 316 AEVDNLQGDASKAKEVLGWKP 336
>3pvt_A Phenylacetic acid degradation protein PAAA; protein-protein
complex, ferritin-like fold, bacterial multi
monooxygenase, structural genomics; HET: 3HC; 2.03A
{Escherichia coli} PDB: 3pvr_A* 3pvy_A* 3pw1_A* 3pw8_C*
3pwq_C
Length = 311
Score = 24.7 bits (53), Expect = 9.8
Identities = 11/53 (20%), Positives = 20/53 (37%)
Query: 51 DTRIKVVQQAKSIDEMETKIKSGQIEEVIIQAENELLLARKMLNWKPWEPLLK 103
+ RI + D M + I ++ A +E++ NW P L+
Sbjct: 10 EQRIAQETAIEPQDWMPDAYRKTLIRQIGQHAHSEIVGMLPEGNWITRAPTLR 62
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.313 0.129 0.380
Gapped
Lambda K H
0.267 0.0500 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,839,862
Number of extensions: 101687
Number of successful extensions: 212
Number of sequences better than 10.0: 1
Number of HSP's gapped: 212
Number of HSP's successfully gapped: 53
Length of query: 121
Length of database: 6,701,793
Length adjustment: 82
Effective length of query: 39
Effective length of database: 4,412,271
Effective search space: 172078569
Effective search space used: 172078569
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (24.0 bits)