RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy1160
         (121 letters)



>d2cchb2 a.74.1.1 (B:309-432) Cyclin A {Cow (Bos taurus) [TaxId:
           9913]}
          Length = 124

 Score = 24.0 bits (52), Expect = 4.4
 Identities = 5/24 (20%), Positives = 8/24 (33%)

Query: 79  IIQAENELLLARKMLNWKPWEPLL 102
            + A     LA   +  + W   L
Sbjct: 45  SVIAGAAFHLALYTVTGQSWPESL 68


>d1vzya1 d.193.1.1 (A:1-233) Heat shock protein 33, Hsp33 {Bacillus
           subtilis [TaxId: 1423]}
          Length = 233

 Score = 24.2 bits (52), Expect = 5.0
 Identities = 11/67 (16%), Positives = 28/67 (41%), Gaps = 9/67 (13%)

Query: 1   MTSEQTTGLTGLAVSPDPKHSLTVLYNKILRLLAKMPDDAAYKKYTKEIVDTRIKVVQQA 60
           ++SEQ     G+ V  +P +++      I++L+    D+          +    + + Q 
Sbjct: 148 VSSEQVPSSVGVGVLVNPDNTILAAGGFIIQLMPGTDDET---------ITKIEQRLSQV 198

Query: 61  KSIDEME 67
           + I ++ 
Sbjct: 199 EPISKLI 205


>d1gpua1 c.36.1.10 (A:3-337) Transketolase (TK), PP module {Baker's
           yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 335

 Score = 23.5 bits (50), Expect = 9.4
 Identities = 1/18 (5%), Positives = 7/18 (38%)

Query: 83  ENELLLARKMLNWKPWEP 100
            +++   +    + P + 
Sbjct: 267 ADDVKQLKSKFGFNPDKS 284


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.313    0.129    0.380 

Gapped
Lambda     K      H
   0.267   0.0556    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 451,470
Number of extensions: 19593
Number of successful extensions: 62
Number of sequences better than 10.0: 1
Number of HSP's gapped: 62
Number of HSP's successfully gapped: 11
Length of query: 121
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 46
Effective length of database: 1,377,846
Effective search space: 63380916
Effective search space used: 63380916
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 47 (22.3 bits)