BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11600
(277 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3OVP|A Chain A, Crystal Structure Of Hrpe
pdb|3OVP|B Chain B, Crystal Structure Of Hrpe
pdb|3OVQ|A Chain A, Crytal Structure Of Hrpe And D-Ribulose-5-Phospate Complex
pdb|3OVQ|B Chain B, Crytal Structure Of Hrpe And D-Ribulose-5-Phospate Complex
pdb|3OVR|A Chain A, Crystal Structure Of Hrpe And D-Xylulose 5-Phosphate
Complex
pdb|3OVR|B Chain B, Crystal Structure Of Hrpe And D-Xylulose 5-Phosphate
Complex
Length = 228
Score = 231 bits (590), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 116/228 (50%), Positives = 147/228 (64%), Gaps = 44/228 (19%)
Query: 6 CMIGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPK- 64
C IGPSILNSDL+NL +E +LDSGADYLHLDVMDG FVPN+TFGHPVV+ LR ++ +
Sbjct: 5 CKIGPSILNSDLANLGAECLRMLDSGADYLHLDVMDGHFVPNITFGHPVVESLRKQLGQD 64
Query: 65 AFFETHMMVQNPQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIE 124
FF+ HMMV P+QW++PMA A +QYTFH+E +N +I+ I+E GMKV
Sbjct: 65 PFFDMHMMVSKPEQWVKPMAVAGANQYTFHLEATENPGALIKDIRENGMKV--------- 115
Query: 125 PMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIM 184
GLAIKP T V+ +A + D+ L+M
Sbjct: 116 ----------------------------------GLAIKPGTSVEYLAPWANQIDMALVM 141
Query: 185 TVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKC 232
TVEPGFGGQKFM+DMMPKV WLR +P+L+IEVDGGVGP+T+ +CA+
Sbjct: 142 TVEPGFGGQKFMEDMMPKVHWLRTQFPSLDIEVDGGVGPDTVHKCAEA 189
>pdb|3QC3|A Chain A, Crystal Structure Of A D-Ribulose-5-Phosphate-3-Epimerase
(Np_954699) From Homo Sapiens At 2.20 A Resolution
pdb|3QC3|B Chain B, Crystal Structure Of A D-Ribulose-5-Phosphate-3-Epimerase
(Np_954699) From Homo Sapiens At 2.20 A Resolution
Length = 225
Score = 208 bits (530), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 107/228 (46%), Positives = 136/228 (59%), Gaps = 44/228 (19%)
Query: 6 CMIGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPK- 64
C IGPSILNSDL+NL +E LDSGADYLHLDV DG FVPN+TFGHPVV+ LR ++ +
Sbjct: 6 CKIGPSILNSDLANLGAECLRXLDSGADYLHLDVXDGHFVPNITFGHPVVESLRKQLGQD 65
Query: 65 AFFETHMMVQNPQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIE 124
FF+ H V P+QW++P A A +QYTFH+E +N +I+ I+E G KV
Sbjct: 66 PFFDXHXXVSKPEQWVKPXAVAGANQYTFHLEATENPGALIKDIRENGXKV--------- 116
Query: 125 PMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIM 184
GLAIKP T V+ +A + D L+
Sbjct: 117 ----------------------------------GLAIKPGTSVEYLAPWANQIDXALVX 142
Query: 185 TVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKC 232
TVEPGFGGQKF +D PKV WLR +P+L+IEVDGGVGP+T+ +CA+
Sbjct: 143 TVEPGFGGQKFXEDXXPKVHWLRTQFPSLDIEVDGGVGPDTVHKCAEA 190
>pdb|1H1Y|A Chain A, The Structure Of The Cytosolic D-Ribulose-5-Phosphate 3-
Epimerase From Rice Complexed With Sulfate
pdb|1H1Y|B Chain B, The Structure Of The Cytosolic D-Ribulose-5-Phosphate 3-
Epimerase From Rice Complexed With Sulfate
pdb|1H1Z|A Chain A, The Structure Of The Cytosolic D-Ribulose-5-Phosphate 3-
Epimerase From Rice Complexed With Sulfate And Zinc
pdb|1H1Z|B Chain B, The Structure Of The Cytosolic D-Ribulose-5-Phosphate 3-
Epimerase From Rice Complexed With Sulfate And Zinc
Length = 228
Score = 181 bits (460), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 96/229 (41%), Positives = 137/229 (59%), Gaps = 48/229 (20%)
Query: 8 IGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFF 67
I PS+L+SD +NL +E+ ++ GAD+LH+D+MDG FVPNLT G PV++ LR K KA+
Sbjct: 9 IAPSMLSSDFANLAAEADRMVRLGADWLHMDIMDGHFVPNLTIGAPVIQSLR-KHTKAYL 67
Query: 68 ETHMMVQNPQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPMA 127
+ H+MV NP D++EP+A
Sbjct: 68 DCHLMVTNPS-------------------------------------------DYVEPLA 84
Query: 128 DANVDQYTFHVE-PVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIES---ADLVLI 183
A +TFH+E DN ++I+ IK GM+ G++++P TPV+ + +E+ +LVL+
Sbjct: 85 KAGASGFTFHIEVSRDNWQELIQSIKAKGMRPGVSLRPGTPVEEVFPLVEAENPVELVLV 144
Query: 184 MTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKC 232
MTVEPGFGGQKFM +MM KV+ LR+ YP+L+IEVDGG+GP+TID A
Sbjct: 145 MTVEPGFGGQKFMPEMMEKVRALRKKYPSLDIEVDGGLGPSTIDVAASA 193
>pdb|1TQX|A Chain A, Crystal Structure Of Pfal009167 A Putative D-Ribulose
5-Phosphate 3- Epimerase From P.Falciparum
pdb|1TQX|B Chain B, Crystal Structure Of Pfal009167 A Putative D-Ribulose
5-Phosphate 3- Epimerase From P.Falciparum
Length = 227
Score = 146 bits (368), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 81/232 (34%), Positives = 126/232 (54%), Gaps = 43/232 (18%)
Query: 1 MSHVQCMIGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRN 60
M ++ +I PS+L S++S L E+Q + GA+++HLDVMD FVPNL+FG PV+ L+
Sbjct: 1 MGTLKAIIAPSVLASNISKLAEETQRMESLGAEWIHLDVMDMHFVPNLSFGPPVINNLKK 60
Query: 61 KIPKAFFETHMMVQNPQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQ 120
FF+ H+MV+ P++++ + +N Q TFH E ++
Sbjct: 61 YTKSIFFDVHLMVEYPEKYVPLLKTSN--QLTFHFEALN--------------------- 97
Query: 121 DWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIES--A 178
E + Q+ ++I++ + G++IKPKT V + +++
Sbjct: 98 ------------------EDTERCIQLAKEIRDNNLWCGISIKPKTDVQKLVPILDTNLI 139
Query: 179 DLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECA 230
+ VL+MTVEPGFGGQ FM DMM KV +LR+ Y LNI+VDGG+ T + A
Sbjct: 140 NTVLVMTVEPGFGGQSFMHDMMGKVSFLRKKYKNLNIQVDGGLNIETTEISA 191
>pdb|2FLI|A Chain A, The Crystal Structure Of D-Ribulose 5-Phosphate
3-Epimerase From Streptococus Pyogenes Complexed With
D-Xylitol 5- Phosphate
pdb|2FLI|B Chain B, The Crystal Structure Of D-Ribulose 5-Phosphate
3-Epimerase From Streptococus Pyogenes Complexed With
D-Xylitol 5- Phosphate
pdb|2FLI|C Chain C, The Crystal Structure Of D-Ribulose 5-Phosphate
3-Epimerase From Streptococus Pyogenes Complexed With
D-Xylitol 5- Phosphate
pdb|2FLI|D Chain D, The Crystal Structure Of D-Ribulose 5-Phosphate
3-Epimerase From Streptococus Pyogenes Complexed With
D-Xylitol 5- Phosphate
pdb|2FLI|E Chain E, The Crystal Structure Of D-Ribulose 5-Phosphate
3-Epimerase From Streptococus Pyogenes Complexed With
D-Xylitol 5- Phosphate
pdb|2FLI|F Chain F, The Crystal Structure Of D-Ribulose 5-Phosphate
3-Epimerase From Streptococus Pyogenes Complexed With
D-Xylitol 5- Phosphate
pdb|2FLI|G Chain G, The Crystal Structure Of D-Ribulose 5-Phosphate
3-Epimerase From Streptococus Pyogenes Complexed With
D-Xylitol 5- Phosphate
pdb|2FLI|H Chain H, The Crystal Structure Of D-Ribulose 5-Phosphate
3-Epimerase From Streptococus Pyogenes Complexed With
D-Xylitol 5- Phosphate
pdb|2FLI|I Chain I, The Crystal Structure Of D-Ribulose 5-Phosphate
3-Epimerase From Streptococus Pyogenes Complexed With
D-Xylitol 5- Phosphate
pdb|2FLI|J Chain J, The Crystal Structure Of D-Ribulose 5-Phosphate
3-Epimerase From Streptococus Pyogenes Complexed With
D-Xylitol 5- Phosphate
pdb|2FLI|K Chain K, The Crystal Structure Of D-Ribulose 5-Phosphate
3-Epimerase From Streptococus Pyogenes Complexed With
D-Xylitol 5- Phosphate
pdb|2FLI|L Chain L, The Crystal Structure Of D-Ribulose 5-Phosphate
3-Epimerase From Streptococus Pyogenes Complexed With
D-Xylitol 5- Phosphate
Length = 220
Score = 137 bits (346), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 85/254 (33%), Positives = 124/254 (48%), Gaps = 52/254 (20%)
Query: 8 IGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFF 67
I PSIL +D +N SE + ++ A+Y+H+D+MDG FVPN++FG VV +R K K F
Sbjct: 6 IAPSILAADYANFASELARIEETDAEYVHIDIMDGQFVPNISFGADVVASMR-KHSKLVF 64
Query: 68 ETHMMVQNPQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPMA 127
+ H+MV +P++++E A A D T H E ++ +++IK AGMK G V
Sbjct: 65 DCHLMVVDPERYVEAFAQAGADIMTIHTESTRHIHGALQKIKAAGMKAGVV--------- 115
Query: 128 DANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIMTVE 187
I P TP + ++ D VLIMTV
Sbjct: 116 ----------------------------------INPGTPATALEPLLDLVDQVLIMTVN 141
Query: 188 PGFGGQKFMQDMMPKV----KWLRENYPTLNIEVDGGVGPNTIDECAKCLTG-FGGQKFM 242
PGFGGQ F+ + + KV KW E + +IEVDGGV TI C + F ++
Sbjct: 142 PGFGGQAFIPECLEKVATVAKWRDEKGLSFDIEVDGGVDNKTIRACYEAGANVFVAGSYL 201
Query: 243 ---QDMMPKVKWLR 253
D++ +V+ LR
Sbjct: 202 FKASDLVSQVQTLR 215
>pdb|3INP|A Chain A, 2.05 Angstrom Resolution Crystal Structure Of
D-Ribulose-Phosphate 3- Epimerase From Francisella
Tularensis
Length = 246
Score = 131 bits (329), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 85/237 (35%), Positives = 121/237 (51%), Gaps = 51/237 (21%)
Query: 1 MSHVQCMIGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRN 60
M H+Q I PSIL++DL+ L + + +L +GAD +H DVMD +VPNLTFG V+K LR+
Sbjct: 25 MKHIQ--INPSILSADLARLGDDVKAVLAAGADNIHFDVMDNHYVPNLTFGPMVLKALRD 82
Query: 61 KIPKAFFETHMMVQNPQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQ 120
A + H+MV+ PVD +
Sbjct: 83 YGITAGMDVHLMVK----------------------PVDAL------------------- 101
Query: 121 DWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIES-AD 179
IE A A FH E +++ + ++ IK G++ GLA+ P T +D + +Y+ES D
Sbjct: 102 --IESFAKAGATSIVFHPEASEHIDRSLQLIKSFGIQAGLALNPATGIDCL-KYVESNID 158
Query: 180 LVLIMTVEPGFGGQKFMQDMMPKV----KWLRENYPTLNIEVDGGVGPNTIDECAKC 232
VLIM+V PGFGGQKF+ M+ K KW+ + +E+DGGV P I E A C
Sbjct: 159 RVLIMSVNPGFGGQKFIPAMLDKAKEISKWISSTDRDILLEIDGGVNPYNIAEIAVC 215
>pdb|1TQJ|A Chain A, Crystal Structure Of D-Ribulose 5-Phosphate 3-Epimerase
From Synechocystis To 1.6 Angstrom Resolution
pdb|1TQJ|B Chain B, Crystal Structure Of D-Ribulose 5-Phosphate 3-Epimerase
From Synechocystis To 1.6 Angstrom Resolution
pdb|1TQJ|C Chain C, Crystal Structure Of D-Ribulose 5-Phosphate 3-Epimerase
From Synechocystis To 1.6 Angstrom Resolution
pdb|1TQJ|D Chain D, Crystal Structure Of D-Ribulose 5-Phosphate 3-Epimerase
From Synechocystis To 1.6 Angstrom Resolution
pdb|1TQJ|E Chain E, Crystal Structure Of D-Ribulose 5-Phosphate 3-Epimerase
From Synechocystis To 1.6 Angstrom Resolution
pdb|1TQJ|F Chain F, Crystal Structure Of D-Ribulose 5-Phosphate 3-Epimerase
From Synechocystis To 1.6 Angstrom Resolution
Length = 230
Score = 118 bits (295), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 71/224 (31%), Positives = 113/224 (50%), Gaps = 50/224 (22%)
Query: 7 MIGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAF 66
++ PSIL++D S L E + + ++GAD++H+DVMDG FVPN+T G +V +R + K
Sbjct: 6 VVAPSILSADFSRLGEEIKAVDEAGADWIHVDVMDGRFVPNITIGPLIVDAIR-PLTKKT 64
Query: 67 FETHMMVQNPQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPM 126
+ H+M+ P++++ E
Sbjct: 65 LDVHLMIVEPEKYV-------------------------------------------EDF 81
Query: 127 ADANVDQYTFHVE--PVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIM 184
A A D + HVE ++ + + QI+E G K G + P TP+D + + DL+LIM
Sbjct: 82 AKAGADIISVHVEHNASPHLHRTLCQIRELGKKAGAVLNPSTPLDFLEYVLPVCDLILIM 141
Query: 185 TVEPGFGGQKFMQDMMPKVKWLRENYPTLN----IEVDGGVGPN 224
+V PGFGGQ F+ +++PK++ LR+ IEVDGG+ PN
Sbjct: 142 SVNPGFGGQSFIPEVLPKIRALRQMCDERGLDPWIEVDGGLKPN 185
>pdb|1RPX|A Chain A, D-Ribulose-5-Phosphate 3-Epimerase From Solanum Tuberosum
Chloroplasts
pdb|1RPX|B Chain B, D-Ribulose-5-Phosphate 3-Epimerase From Solanum Tuberosum
Chloroplasts
pdb|1RPX|C Chain C, D-Ribulose-5-Phosphate 3-Epimerase From Solanum Tuberosum
Chloroplasts
Length = 230
Score = 114 bits (286), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 75/228 (32%), Positives = 107/228 (46%), Gaps = 46/228 (20%)
Query: 1 MSHVQCMIGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRN 60
S ++ PSIL+++ S L + + + +G D++H+DVMDG FVPN+T G VV LR
Sbjct: 6 FSKSDIIVSPSILSANFSKLGEQVKAIEQAGCDWIHVDVMDGRFVPNITIGPLVVDSLR- 64
Query: 61 KIPKAFFETHMMVQNPQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQ 120
I + H+M+ P Q + A D + H E
Sbjct: 65 PITDLPLDVHLMIVEPDQRVPDFIKAGADIVSVHCE------------------------ 100
Query: 121 DWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADL 180
T H+ + I QIK G K G+ + P TP+ I +++ DL
Sbjct: 101 -----------QSSTIHLH------RTINQIKSLGAKAGVVLNPGTPLTAIEYVLDAVDL 143
Query: 181 VLIMTVEPGFGGQKFMQDMMPKVKWLRE--NYPTLN--IEVDGGVGPN 224
VLIM+V PGFGGQ F++ + K+ LR+ LN IEVDGGVGP
Sbjct: 144 VLIMSVNPGFGGQSFIESQVKKISDLRKICAERGLNPWIEVDGGVGPK 191
>pdb|3CT7|A Chain A, Crystal Structure Of D-Allulose 6-Phosphate 3-Epimerase
From Escherichia Coli K-12
pdb|3CT7|B Chain B, Crystal Structure Of D-Allulose 6-Phosphate 3-Epimerase
From Escherichia Coli K-12
pdb|3CT7|C Chain C, Crystal Structure Of D-Allulose 6-Phosphate 3-Epimerase
From Escherichia Coli K-12
pdb|3CT7|D Chain D, Crystal Structure Of D-Allulose 6-Phosphate 3-Epimerase
From Escherichia Coli K-12
pdb|3CT7|E Chain E, Crystal Structure Of D-Allulose 6-Phosphate 3-Epimerase
From Escherichia Coli K-12
pdb|3CT7|F Chain F, Crystal Structure Of D-Allulose 6-Phosphate 3-Epimerase
From Escherichia Coli K-12
pdb|3CTL|A Chain A, Crystal Structure Of D-Allulose 6-Phosphate 3-Epimerase
From Escherichia Coli K12 Complexed With D-Glucitol 6-
Phosphate And Magnesium
pdb|3CTL|B Chain B, Crystal Structure Of D-Allulose 6-Phosphate 3-Epimerase
From Escherichia Coli K12 Complexed With D-Glucitol 6-
Phosphate And Magnesium
pdb|3CTL|C Chain C, Crystal Structure Of D-Allulose 6-Phosphate 3-Epimerase
From Escherichia Coli K12 Complexed With D-Glucitol 6-
Phosphate And Magnesium
pdb|3CTL|D Chain D, Crystal Structure Of D-Allulose 6-Phosphate 3-Epimerase
From Escherichia Coli K12 Complexed With D-Glucitol 6-
Phosphate And Magnesium
pdb|3CTL|E Chain E, Crystal Structure Of D-Allulose 6-Phosphate 3-Epimerase
From Escherichia Coli K12 Complexed With D-Glucitol 6-
Phosphate And Magnesium
pdb|3CTL|F Chain F, Crystal Structure Of D-Allulose 6-Phosphate 3-Epimerase
From Escherichia Coli K12 Complexed With D-Glucitol 6-
Phosphate And Magnesium
Length = 231
Score = 103 bits (257), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 70/226 (30%), Positives = 99/226 (43%), Gaps = 50/226 (22%)
Query: 8 IGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFF 67
I PS++ DL E +DS ADY H+D+MDG FVPNLT P K+
Sbjct: 3 ISPSLMCMDLLKF-KEQIEFIDSHADYFHIDIMDGHFVPNLTLS-PFFVSQVKKLATKPL 60
Query: 68 ETHMMVQNPQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPMA 127
+ H+MV PQ D+I +A
Sbjct: 61 DCHLMVTRPQ-------------------------------------------DYIAQLA 77
Query: 128 DANVDQYTFHVEPVD-NVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIMTV 186
A D T H E ++ ++I +I+ MKVGL + P+TPV+ + YI AD + +MTV
Sbjct: 78 RAGADFITLHPETINGQAFRLIDEIRRHDMKVGLILNPETPVEAMKYYIHKADKITVMTV 137
Query: 187 EPGFGGQKFMQDMMPKV----KWLRENYPTLNIEVDGGVGPNTIDE 228
+PGF GQ F+ +M+ K+ W IEVDG T ++
Sbjct: 138 DPGFAGQPFIPEMLDKLAELKAWREREGLEYEIEVDGSCNQATYEK 183
>pdb|3CU2|A Chain A, Crystal Structure Of Ribulose-5-phosphate 3-epimerase
(yp_718263.1) From Haemophilus Somnus 129pt At 1.91 A
Resolution
pdb|3CU2|B Chain B, Crystal Structure Of Ribulose-5-phosphate 3-epimerase
(yp_718263.1) From Haemophilus Somnus 129pt At 1.91 A
Resolution
Length = 237
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/187 (19%), Positives = 72/187 (38%), Gaps = 37/187 (19%)
Query: 5 QCMIGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPK 64
Q + IL+++ L+ E LL++ + LH D+ DG F T G +K
Sbjct: 13 QQKLSVGILSANWLQLNEEVTTLLENQINVLHFDIADGQFSSLFTVGAIGIKYFPT---H 69
Query: 65 AFFETHMMVQNPQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIE 124
F + H+ V+N + + + + T +E + I +W+
Sbjct: 70 CFKDVHLXVRNQLEVAKAVVANGANLVTLQLEQYHDFALTI---------------EWLA 114
Query: 125 PMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIM 184
+Q V PV +G + P+TP+ + Y++ D++ ++
Sbjct: 115 KQKTTYANQ----VYPV---------------LIGACLCPETPISELEPYLDQIDVIQLL 155
Query: 185 TVEPGFG 191
T++P G
Sbjct: 156 TLDPRNG 162
>pdb|2JBM|A Chain A, Qprtase Structure From Human
pdb|2JBM|B Chain B, Qprtase Structure From Human
pdb|2JBM|C Chain C, Qprtase Structure From Human
pdb|2JBM|D Chain D, Qprtase Structure From Human
pdb|2JBM|E Chain E, Qprtase Structure From Human
pdb|2JBM|F Chain F, Qprtase Structure From Human
pdb|2JBM|G Chain G, Qprtase Structure From Human
pdb|2JBM|H Chain H, Qprtase Structure From Human
pdb|2JBM|I Chain I, Qprtase Structure From Human
pdb|2JBM|J Chain J, Qprtase Structure From Human
pdb|2JBM|K Chain K, Qprtase Structure From Human
pdb|2JBM|L Chain L, Qprtase Structure From Human
Length = 299
Score = 31.2 bits (69), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 28/135 (20%), Positives = 55/135 (40%), Gaps = 17/135 (12%)
Query: 91 YTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPMADANVDQYTFHVEPVDNVPQVIRQ 150
+T HV R +++ G+ VG + V HV V + +R
Sbjct: 132 WTGHVAGTRKTTPGFRLVEKYGLLVGGAASHRYDLGGLVMVKDN--HVVAAGGVEKAVRA 189
Query: 151 IKEAGMKVGLAIKPKTPVDVIAEYIESA----DLVLIMTVEPGFGGQKFMQDMMPKVKWL 206
++A A+K + + E +++A DLVL+ +P +++ P L
Sbjct: 190 ARQA---ADFALKVEVECSSLQEAVQAAEAGADLVLLDNFKP--------EELHPTATVL 238
Query: 207 RENYPTLNIEVDGGV 221
+ +P++ +E GG+
Sbjct: 239 KAQFPSVAVEASGGI 253
>pdb|3LAR|A Chain A, Crystal Structure Of Human Quinolinate
Phosphoribosyltransferase
pdb|3LAR|B Chain B, Crystal Structure Of Human Quinolinate
Phosphoribosyltransferase
pdb|3LAR|C Chain C, Crystal Structure Of Human Quinolinate
Phosphoribosyltransferase
pdb|3LAR|D Chain D, Crystal Structure Of Human Quinolinate
Phosphoribosyltransferase
pdb|3LAR|E Chain E, Crystal Structure Of Human Quinolinate
Phosphoribosyltransferase
pdb|3LAR|F Chain F, Crystal Structure Of Human Quinolinate
Phosphoribosyltransferase
Length = 305
Score = 31.2 bits (69), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 20/89 (22%), Positives = 41/89 (46%), Gaps = 15/89 (16%)
Query: 137 HVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESA----DLVLIMTVEPGFGG 192
HV V + +R ++A A+K + + E +++A DLVL+ +P
Sbjct: 174 HVVAAGGVEKAVRAARQAA---DFALKVEVECSSLQEAVQAAEAGADLVLLDNFKP---- 226
Query: 193 QKFMQDMMPKVKWLRENYPTLNIEVDGGV 221
+++ P L+ +P++ +E GG+
Sbjct: 227 ----EELHPTATVLKAQFPSVAVEASGGI 251
>pdb|1S1M|A Chain A, Crystal Structure Of E. Coli Ctp Synthetase
pdb|1S1M|B Chain B, Crystal Structure Of E. Coli Ctp Synthetase
pdb|2AD5|A Chain A, Mechanisms Of Feedback Regulation And Drug Resistance Of
Ctp Synthetases: Structure Of The E. Coli Ctps/ctp
Complex At 2.8- Angstrom Resolution.
pdb|2AD5|B Chain B, Mechanisms Of Feedback Regulation And Drug Resistance Of
Ctp Synthetases: Structure Of The E. Coli Ctps/ctp
Complex At 2.8- Angstrom Resolution
Length = 545
Score = 30.8 bits (68), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 49/105 (46%), Gaps = 10/105 (9%)
Query: 117 QVLQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMK--VGLAIKPKTPVDVIA-- 172
QV+ + P+++ + ++E D VI +K G+K V + IK DV
Sbjct: 278 QVIFEEANPVSEVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVSVNIKLIDSQDVETRG 337
Query: 173 -EYIESADLVLIMTVEPGFGGQKFMQDMMPKVKWLRE-NYPTLNI 215
E ++ D +L+ PG G + ++ M+ ++ RE N P L I
Sbjct: 338 VEILKGLDAILV----PGGFGYRGVEGMITTARFARENNIPYLGI 378
>pdb|1F8I|A Chain A, Crystal Structure Of Isocitrate
Lyase:nitropropionate:glyoxylate Complex From
Mycobacterium Tuberculosis
pdb|1F8I|B Chain B, Crystal Structure Of Isocitrate
Lyase:nitropropionate:glyoxylate Complex From
Mycobacterium Tuberculosis
pdb|1F8I|C Chain C, Crystal Structure Of Isocitrate
Lyase:nitropropionate:glyoxylate Complex From
Mycobacterium Tuberculosis
pdb|1F8I|D Chain D, Crystal Structure Of Isocitrate
Lyase:nitropropionate:glyoxylate Complex From
Mycobacterium Tuberculosis
Length = 429
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 30/53 (56%), Gaps = 11/53 (20%)
Query: 85 DANVDQYTF---HVEPVDNVPQVIRQIKEAGMKVGQV--------LQDWIEPM 126
DAN+ +T+ + P ++VPQV+R+I A + Q+ +++W+ P+
Sbjct: 99 DANLSGHTYPDQSLYPANSVPQVVRRINNALQRADQIAKIEGDTSVENWLAPI 151
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 45/92 (48%), Gaps = 11/92 (11%)
Query: 104 VIRQIKEAGMKVGQVLQDWIEPMADANVDQYTF---HVEPVDNVPQVIRQIKEAGMKVGL 160
++Q++ AG+K L W + DAN+ +T+ + P ++VPQV+R+I A +
Sbjct: 78 AVQQVR-AGLKA-IYLSGW-QVAGDANLSGHTYPDQSLYPANSVPQVVRRINNALQRADQ 134
Query: 161 AIKPKTPVDVIAEYIESADLVLIMTVEPGFGG 192
K + V E+ ++ E GFGG
Sbjct: 135 IAKIEGDTSV-----ENWLAPIVADGEAGFGG 161
>pdb|3JY6|A Chain A, Crystal Structure Of Laci Transcriptional Regulator From
Lactobacillus Brevis
pdb|3JY6|B Chain B, Crystal Structure Of Laci Transcriptional Regulator From
Lactobacillus Brevis
pdb|3JY6|C Chain C, Crystal Structure Of Laci Transcriptional Regulator From
Lactobacillus Brevis
pdb|3JY6|D Chain D, Crystal Structure Of Laci Transcriptional Regulator From
Lactobacillus Brevis
Length = 276
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 7/54 (12%)
Query: 202 KVKWLRENYPTLNIEVDGGVGPNTIDECAKCLTGFGGQKFMQDMMPKVKWLREN 255
K +WL E +P L I ID TGF F++ M PK+ + +N
Sbjct: 189 KERWLLEFFPNLII-------SGLIDNQTVTATGFADTDFIRRMEPKLTLITQN 235
>pdb|1F61|A Chain A, Crystal Structure Of Isocitrate Lyase From Mycobacterium
Tuberculosis
pdb|1F61|B Chain B, Crystal Structure Of Isocitrate Lyase From Mycobacterium
Tuberculosis
pdb|1F8M|A Chain A, Crystal Structure Of 3-Bromopyruvate Modified Isocitrate
Lyase (Icl) From Mycobacterium Tuberculosis
pdb|1F8M|B Chain B, Crystal Structure Of 3-Bromopyruvate Modified Isocitrate
Lyase (Icl) From Mycobacterium Tuberculosis
pdb|1F8M|C Chain C, Crystal Structure Of 3-Bromopyruvate Modified Isocitrate
Lyase (Icl) From Mycobacterium Tuberculosis
pdb|1F8M|D Chain D, Crystal Structure Of 3-Bromopyruvate Modified Isocitrate
Lyase (Icl) From Mycobacterium Tuberculosis
Length = 429
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 30/53 (56%), Gaps = 11/53 (20%)
Query: 85 DANVDQYTF---HVEPVDNVPQVIRQIKEAGMKVGQV--------LQDWIEPM 126
DAN+ +T+ + P ++VPQV+R+I A + Q+ +++W+ P+
Sbjct: 99 DANLSGHTYPDQSLYPANSVPQVVRRINNALQRADQIAKIEGDTSVENWLAPI 151
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 45/92 (48%), Gaps = 11/92 (11%)
Query: 104 VIRQIKEAGMKVGQVLQDWIEPMADANVDQYTF---HVEPVDNVPQVIRQIKEAGMKVGL 160
++Q++ AG+K L W + DAN+ +T+ + P ++VPQV+R+I A +
Sbjct: 78 AVQQVR-AGLKA-IYLSGW-QVAGDANLSGHTYPDQSLYPANSVPQVVRRINNALQRADQ 134
Query: 161 AIKPKTPVDVIAEYIESADLVLIMTVEPGFGG 192
K + V E+ ++ E GFGG
Sbjct: 135 IAKIEGDTSV-----ENWLAPIVADGEAGFGG 161
>pdb|2GGJ|A Chain A, The Mutant Y218c Of Deinococcus Radiodurans N-Acylamino
Acid Racemase
pdb|2GGJ|B Chain B, The Mutant Y218c Of Deinococcus Radiodurans N-Acylamino
Acid Racemase
pdb|2GGJ|C Chain C, The Mutant Y218c Of Deinococcus Radiodurans N-Acylamino
Acid Racemase
pdb|2GGJ|D Chain D, The Mutant Y218c Of Deinococcus Radiodurans N-Acylamino
Acid Racemase
Length = 375
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/66 (24%), Positives = 34/66 (51%), Gaps = 8/66 (12%)
Query: 153 EAGMKVGLAIKPKTPVDVIAEYIESADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPT 212
E G+ +G+ + VD++ ++E + + ++PG+ D+ P V+ RE +P
Sbjct: 138 EVGVSLGIQADEQATVDLVRRHVEQGYRRIKLKIKPGW-------DVQP-VRATREAFPD 189
Query: 213 LNIEVD 218
+ + VD
Sbjct: 190 IRLTVD 195
>pdb|1R0M|A Chain A, Structure Of Deinococcus Radiodurans N-Acylamino Acid
Racemase At 1.3 : Insights Into A Flexible Binding
Pocket And Evolution Of Enzymatic Activity
pdb|1R0M|B Chain B, Structure Of Deinococcus Radiodurans N-Acylamino Acid
Racemase At 1.3 : Insights Into A Flexible Binding
Pocket And Evolution Of Enzymatic Activity
pdb|1R0M|C Chain C, Structure Of Deinococcus Radiodurans N-Acylamino Acid
Racemase At 1.3 : Insights Into A Flexible Binding
Pocket And Evolution Of Enzymatic Activity
pdb|1R0M|D Chain D, Structure Of Deinococcus Radiodurans N-Acylamino Acid
Racemase At 1.3 : Insights Into A Flexible Binding
Pocket And Evolution Of Enzymatic Activity
pdb|1XPY|A Chain A, Structural Basis For Catalytic Racemization And Substrate
Specificity Of An N-Acylamino Acid Racemase Homologue
From Deinococcus Radiodurans
pdb|1XPY|B Chain B, Structural Basis For Catalytic Racemization And Substrate
Specificity Of An N-Acylamino Acid Racemase Homologue
From Deinococcus Radiodurans
pdb|1XPY|C Chain C, Structural Basis For Catalytic Racemization And Substrate
Specificity Of An N-Acylamino Acid Racemase Homologue
From Deinococcus Radiodurans
pdb|1XPY|D Chain D, Structural Basis For Catalytic Racemization And Substrate
Specificity Of An N-Acylamino Acid Racemase Homologue
From Deinococcus Radiodurans
pdb|1XS2|A Chain A, Structural Basis For Catalytic Racemization And Substrate
Specificity Of An N-Acylamino Acid Racemase Homologue
From Deinococcus Radiodurans
pdb|1XS2|B Chain B, Structural Basis For Catalytic Racemization And Substrate
Specificity Of An N-Acylamino Acid Racemase Homologue
From Deinococcus Radiodurans
pdb|1XS2|C Chain C, Structural Basis For Catalytic Racemization And Substrate
Specificity Of An N-Acylamino Acid Racemase Homologue
From Deinococcus Radiodurans
pdb|1XS2|D Chain D, Structural Basis For Catalytic Racemization And Substrate
Specificity Of An N-Acylamino Acid Racemase Homologue
From Deinococcus Radiodurans
Length = 375
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/66 (24%), Positives = 34/66 (51%), Gaps = 8/66 (12%)
Query: 153 EAGMKVGLAIKPKTPVDVIAEYIESADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPT 212
E G+ +G+ + VD++ ++E + + ++PG+ D+ P V+ RE +P
Sbjct: 138 EVGVSLGIQADEQATVDLVRRHVEQGYRRIKLKIKPGW-------DVQP-VRATREAFPD 189
Query: 213 LNIEVD 218
+ + VD
Sbjct: 190 IRLTVD 195
>pdb|2FKP|A Chain A, The Mutant G127c-T313c Of Deinococcus Radiodurans N-
Acylamino Acid Racemase
pdb|2FKP|B Chain B, The Mutant G127c-T313c Of Deinococcus Radiodurans N-
Acylamino Acid Racemase
pdb|2FKP|C Chain C, The Mutant G127c-T313c Of Deinococcus Radiodurans N-
Acylamino Acid Racemase
pdb|2FKP|D Chain D, The Mutant G127c-T313c Of Deinococcus Radiodurans N-
Acylamino Acid Racemase
Length = 375
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/67 (23%), Positives = 34/67 (50%), Gaps = 8/67 (11%)
Query: 153 EAGMKVGLAIKPKTPVDVIAEYIESADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPT 212
E G+ +G+ + VD++ ++E + + ++PG+ D+ P V+ RE +P
Sbjct: 138 EVGVSLGIQADEQATVDLVRRHVEQGYRRIKLKIKPGW-------DVQP-VRATREAFPD 189
Query: 213 LNIEVDG 219
+ + VD
Sbjct: 190 IRLTVDA 196
>pdb|2GGG|A Chain A, The Mutant A68c-D72c Of Deinococcus Radiodurans
N-Acylamino Acid Racemase
pdb|2GGG|B Chain B, The Mutant A68c-D72c Of Deinococcus Radiodurans
N-Acylamino Acid Racemase
pdb|2GGG|C Chain C, The Mutant A68c-D72c Of Deinococcus Radiodurans
N-Acylamino Acid Racemase
pdb|2GGG|D Chain D, The Mutant A68c-D72c Of Deinococcus Radiodurans
N-Acylamino Acid Racemase
pdb|2GGH|A Chain A, The Mutant A68c-D72c-Nlq Of Deinococcus Radiodurans
Nacylamino Acid Racemase
pdb|2GGH|B Chain B, The Mutant A68c-D72c-Nlq Of Deinococcus Radiodurans
Nacylamino Acid Racemase
pdb|2GGH|C Chain C, The Mutant A68c-D72c-Nlq Of Deinococcus Radiodurans
Nacylamino Acid Racemase
pdb|2GGH|D Chain D, The Mutant A68c-D72c-Nlq Of Deinococcus Radiodurans
Nacylamino Acid Racemase
Length = 375
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/66 (24%), Positives = 34/66 (51%), Gaps = 8/66 (12%)
Query: 153 EAGMKVGLAIKPKTPVDVIAEYIESADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPT 212
E G+ +G+ + VD++ ++E + + ++PG+ D+ P V+ RE +P
Sbjct: 138 EVGVSLGIQADEQATVDLVRRHVEQGYRRIKLKIKPGW-------DVQP-VRATREAFPD 189
Query: 213 LNIEVD 218
+ + VD
Sbjct: 190 IRLTVD 195
>pdb|1LLW|A Chain A, Structural Studies On The Synchronization Of Catalytic
Centers In Glutamate Synthase: Complex With
2-Oxoglutarate
pdb|1LLZ|A Chain A, Structural Studies On The Synchronization Of Catalytic
Centers In Glutamate Synthase: Reduced Enzyme
pdb|1LM1|A Chain A, Structural Studies On The Synchronization Of Catalytic
Centers In Glutamate Synthase: Native Enzyme
pdb|1OFD|A Chain A, Glutamate Synthase From Synechocystis Sp In Complex With
2-Oxoglutarate At 2.0 Angstrom Resolution
pdb|1OFD|B Chain B, Glutamate Synthase From Synechocystis Sp In Complex With
2-Oxoglutarate At 2.0 Angstrom Resolution
pdb|1OFE|A Chain A, Glutamate Synthase From Synechocystis Sp In Complex With
2-Oxoglutarate And L-Don At 2.45 Angstrom Resolution
pdb|1OFE|B Chain B, Glutamate Synthase From Synechocystis Sp In Complex With
2-Oxoglutarate And L-Don At 2.45 Angstrom Resolution
Length = 1520
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 28/55 (50%)
Query: 75 NPQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPMADA 129
P + + D N DQ +E V++V ++++ GM +G + ++ E +A A
Sbjct: 837 RPVTALRDLLDFNADQPAISLEEVESVESIVKRFCTGGMSLGALSREAHETLAIA 891
>pdb|2GGI|A Chain A, The Mutant E149c-A182c Of Deinococcus Radiodurans N-
Acylamino Acid Racemase
pdb|2GGI|B Chain B, The Mutant E149c-A182c Of Deinococcus Radiodurans N-
Acylamino Acid Racemase
pdb|2GGI|C Chain C, The Mutant E149c-A182c Of Deinococcus Radiodurans N-
Acylamino Acid Racemase
pdb|2GGI|D Chain D, The Mutant E149c-A182c Of Deinococcus Radiodurans N-
Acylamino Acid Racemase
Length = 375
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/66 (24%), Positives = 34/66 (51%), Gaps = 8/66 (12%)
Query: 153 EAGMKVGLAIKPKTPVDVIAEYIESADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPT 212
E G+ +G+ + VD++ ++E + + ++PG+ D+ P V+ RE +P
Sbjct: 138 EVGVSLGIQADCQATVDLVRRHVEQGYRRIKLKIKPGW-------DVQP-VRCTREAFPD 189
Query: 213 LNIEVD 218
+ + VD
Sbjct: 190 IRLTVD 195
>pdb|3USB|A Chain A, Crystal Structure Of Bacillus Anthracis Inosine
Monophosphate Dehydrogenase In The Complex With Imp
pdb|3USB|B Chain B, Crystal Structure Of Bacillus Anthracis Inosine
Monophosphate Dehydrogenase In The Complex With Imp
Length = 511
Score = 28.5 bits (62), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 8/61 (13%)
Query: 155 GMKVGLAIKPKTPVDVIAEYIESADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPTLN 214
G VG+ T +D + + S D +++ T Q ++ KVK +R YP+LN
Sbjct: 248 GAAVGVTADAXTRIDALVK--ASVDAIVLDTA------HGHSQGVIDKVKEVRAKYPSLN 299
Query: 215 I 215
I
Sbjct: 300 I 300
>pdb|3UAH|A Chain A, Structure Of The Shq1 Specific Domain From Saccharomyces
Cerevisiae
pdb|3UAI|D Chain D, Structure Of The Shq1-Cbf5-Nop10-Gar1 Complex From
Saccharomyces Cerevisiae
Length = 366
Score = 27.7 bits (60), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 30/63 (47%)
Query: 155 GMKVGLAIKPKTPVDVIAEYIESADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPTLN 214
G+K L P + Y +S + L+M +E QK MQD +PK +L E+ L
Sbjct: 99 GIKELLKFTPSIVKQYLQWYKDSTNPNLVMPIEFTDEEQKQMQDNLPKKSYLVEDIKPLY 158
Query: 215 IEV 217
+ +
Sbjct: 159 VTI 161
>pdb|3ZV0|A Chain A, Structure Of The Shq1p-Cbf5p Complex
pdb|3ZV0|B Chain B, Structure Of The Shq1p-Cbf5p Complex
Length = 369
Score = 27.7 bits (60), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 30/63 (47%)
Query: 155 GMKVGLAIKPKTPVDVIAEYIESADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPTLN 214
G+K L P + Y +S + L+M +E QK MQD +PK +L E+ L
Sbjct: 96 GIKELLKFTPSIVKQYLQWYKDSTNPNLVMPIEFTDEEQKQMQDNLPKKSYLVEDIKPLY 155
Query: 215 IEV 217
+ +
Sbjct: 156 VTI 158
>pdb|3ZUZ|A Chain A, Structure Of Shq1p C-Terminal Domain
Length = 365
Score = 27.7 bits (60), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 30/63 (47%)
Query: 155 GMKVGLAIKPKTPVDVIAEYIESADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPTLN 214
G+K L P + Y +S + L+M +E QK MQD +PK +L E+ L
Sbjct: 98 GIKELLKFTPSIVKQYLQWYKDSTNPNLVMPIEFTDEEQKQMQDNLPKKSYLVEDIKPLY 157
Query: 215 IEV 217
+ +
Sbjct: 158 VTI 160
>pdb|3RHE|A Chain A, The Crystal Structure Of Nad-Dependent Benzaldehyde
Dehydrogenase From Legionella Pneumophila
Length = 148
Score = 27.7 bits (60), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 18/83 (21%), Positives = 39/83 (46%), Gaps = 5/83 (6%)
Query: 95 VEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPMA--DANVDQYTFHVEPVDNVPQVIRQIK 152
+P+++ P + + G+++G Q+ IEP A + +F V + V ++ RQ
Sbjct: 30 TQPIESSPTFAXFVXKTGLRLGLWAQEEIEPKAHQTGGGXELSFQVNSNEXVDEIHRQWS 89
Query: 153 EAGMKVGLAIKPKTPVDVIAEYI 175
+ + + I+P T D ++
Sbjct: 90 DKEISI---IQPPTQXDFGYTFV 109
>pdb|3PPH|A Chain A, Crystal Structure Of The Candida Albicans Methionine
Synthase By Surface Entropy Reduction, Threonine Variant
pdb|3PPH|B Chain B, Crystal Structure Of The Candida Albicans Methionine
Synthase By Surface Entropy Reduction, Threonine Variant
Length = 789
Score = 27.7 bits (60), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 33/150 (22%), Positives = 65/150 (43%), Gaps = 17/150 (11%)
Query: 95 VEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPMADANVDQYTFHVEPVDNVPQV------- 147
++PVD + K G++ V+ + + D+ + +EP+ +P++
Sbjct: 170 IKPVDE----FNEAKALGVQTRPVILGPVSYLYLGKADKDSLDLEPISLLPKILPVYKEL 225
Query: 148 IRQIKEAGMKVGLAIKP----KTPVDVIAEYIESADLVLIMTVEPGFGGQKFMQDMMPKV 203
++++KEAG + +P P V +++ E+ D ++ V P + D+ P +
Sbjct: 226 LQKLKEAGAEQVQIDEPVLVLDLPEAVQSKFKEAYDALVGADV-PELILTTYFGDVRPNL 284
Query: 204 KWLRENYPTLNIEVDGGVGPNTIDECAKCL 233
K + EN P D P +DE A L
Sbjct: 285 KAI-ENLPVAGFHFDFVRVPEQLDEVASIL 313
>pdb|3PPF|A Chain A, Crystal Structure Of The Candida Albicans Methionine
Synthase By Surface Entropy Reduction, Alanine Variant
Without Zinc
pdb|3PPG|A Chain A, Crystal Structure Of The Candida Albicans Methionine
Synthase By Surface Entropy Reduction, Alanine Variant
With Zinc
Length = 789
Score = 27.7 bits (60), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 33/150 (22%), Positives = 65/150 (43%), Gaps = 17/150 (11%)
Query: 95 VEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPMADANVDQYTFHVEPVDNVPQV------- 147
++PVD + K G++ V+ + + D+ + +EP+ +P++
Sbjct: 170 IKPVDE----FNEAKALGVQTRPVILGPVSYLYLGKADKDSLDLEPISLLPKILPVYKEL 225
Query: 148 IRQIKEAGMKVGLAIKP----KTPVDVIAEYIESADLVLIMTVEPGFGGQKFMQDMMPKV 203
++++KEAG + +P P V +++ E+ D ++ V P + D+ P +
Sbjct: 226 LQKLKEAGAEQVQIDEPVLVLDLPEAVQSKFKEAYDALVGADV-PELILTTYFGDVRPNL 284
Query: 204 KWLRENYPTLNIEVDGGVGPNTIDECAKCL 233
K + EN P D P +DE A L
Sbjct: 285 KAI-ENLPVAGFHFDFVRVPEQLDEVASIL 313
>pdb|3DJC|A Chain A, Crystal Structure Of Pantothenate Kinase From Legionella
Pneumophila
pdb|3DJC|B Chain B, Crystal Structure Of Pantothenate Kinase From Legionella
Pneumophila
pdb|3DJC|C Chain C, Crystal Structure Of Pantothenate Kinase From Legionella
Pneumophila
pdb|3DJC|D Chain D, Crystal Structure Of Pantothenate Kinase From Legionella
Pneumophila
pdb|3DJC|E Chain E, Crystal Structure Of Pantothenate Kinase From Legionella
Pneumophila
pdb|3DJC|F Chain F, Crystal Structure Of Pantothenate Kinase From Legionella
Pneumophila
pdb|3DJC|G Chain G, Crystal Structure Of Pantothenate Kinase From Legionella
Pneumophila
pdb|3DJC|H Chain H, Crystal Structure Of Pantothenate Kinase From Legionella
Pneumophila
pdb|3DJC|I Chain I, Crystal Structure Of Pantothenate Kinase From Legionella
Pneumophila
pdb|3DJC|J Chain J, Crystal Structure Of Pantothenate Kinase From Legionella
Pneumophila
pdb|3DJC|K Chain K, Crystal Structure Of Pantothenate Kinase From Legionella
Pneumophila
pdb|3DJC|L Chain L, Crystal Structure Of Pantothenate Kinase From Legionella
Pneumophila
Length = 266
Score = 27.3 bits (59), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 19/26 (73%)
Query: 153 EAGMKVGLAIKPKTPVDVIAEYIESA 178
+AG+K GL IK + PV+V A+ I +A
Sbjct: 90 QAGVKTGLNIKYRNPVEVGADRIANA 115
>pdb|3PPC|A Chain A, Crystal Structure Of The Candida Albicans Methionine
Synthase By Surface Entropy Reduction, Tyrosine Variant
With Zinc
pdb|3PPC|B Chain B, Crystal Structure Of The Candida Albicans Methionine
Synthase By Surface Entropy Reduction, Tyrosine Variant
With Zinc
Length = 789
Score = 27.3 bits (59), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 33/150 (22%), Positives = 65/150 (43%), Gaps = 17/150 (11%)
Query: 95 VEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPMADANVDQYTFHVEPVDNVPQV------- 147
++PVD + K G++ V+ + + D+ + +EP+ +P++
Sbjct: 170 IKPVDE----FNEAKALGVQTRPVILGPVSYLYLGKADKDSLDLEPISLLPKILPVYKEL 225
Query: 148 IRQIKEAGMKVGLAIKP----KTPVDVIAEYIESADLVLIMTVEPGFGGQKFMQDMMPKV 203
++++KEAG + +P P V +++ E+ D ++ V P + D+ P +
Sbjct: 226 LQKLKEAGAEQVQIDEPVLVLDLPEAVQSKFKEAYDALVGADV-PELILTTYFGDVRPNL 284
Query: 204 KWLRENYPTLNIEVDGGVGPNTIDECAKCL 233
K + EN P D P +DE A L
Sbjct: 285 KAI-ENLPVAGFHFDFVRVPEQLDEVASIL 313
>pdb|3TSB|A Chain A, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase From Bacillus Anthracis Str. Ames
pdb|3TSB|B Chain B, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase From Bacillus Anthracis Str. Ames
pdb|3TSD|A Chain A, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase From Bacillus Anthracis Str. Ames
Complexed With Xmp
pdb|3TSD|B Chain B, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase From Bacillus Anthracis Str. Ames
Complexed With Xmp
Length = 511
Score = 27.3 bits (59), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 8/61 (13%)
Query: 155 GMKVGLAIKPKTPVDVIAEYIESADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPTLN 214
G VG+ T +D + + S D +++ T Q ++ KVK +R YP+LN
Sbjct: 248 GAAVGVTADAMTRIDALVK--ASVDAIVLDTA------HGHSQGVIDKVKEVRAKYPSLN 299
Query: 215 I 215
I
Sbjct: 300 I 300
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,196,972
Number of Sequences: 62578
Number of extensions: 399735
Number of successful extensions: 1095
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 1030
Number of HSP's gapped (non-prelim): 63
length of query: 277
length of database: 14,973,337
effective HSP length: 98
effective length of query: 179
effective length of database: 8,840,693
effective search space: 1582484047
effective search space used: 1582484047
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)