BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11600
(277 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8VEE0|RPE_MOUSE Ribulose-phosphate 3-epimerase OS=Mus musculus GN=Rpe PE=2 SV=1
Length = 228
Score = 233 bits (593), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 117/228 (51%), Positives = 147/228 (64%), Gaps = 44/228 (19%)
Query: 6 CMIGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPK- 64
C IGPSILNSDL+NL +E +LDSGADYLHLDVMDG FVPN+TFGHPVV+ LR ++ +
Sbjct: 5 CKIGPSILNSDLANLGAECLRMLDSGADYLHLDVMDGHFVPNITFGHPVVESLRKQLGQD 64
Query: 65 AFFETHMMVQNPQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIE 124
FF+ HMMV P+Q W++
Sbjct: 65 PFFDMHMMVSRPEQ-------------------------------------------WVK 81
Query: 125 PMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIM 184
PMA A +QYTFH+E +N +I+ I+E GMKVGLAIKP T V+ +A + D+ L+M
Sbjct: 82 PMAVAGANQYTFHLEATENPGALIKDIRENGMKVGLAIKPGTTVEYLAPWANQIDMALVM 141
Query: 185 TVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKC 232
TVEPGFGGQKFM+DMMPKV WLR +PTL+IEVDGGVGP+T+ +CA+
Sbjct: 142 TVEPGFGGQKFMEDMMPKVHWLRTQFPTLDIEVDGGVGPDTVQKCAEA 189
>sp|Q96AT9|RPE_HUMAN Ribulose-phosphate 3-epimerase OS=Homo sapiens GN=RPE PE=1 SV=1
Length = 228
Score = 231 bits (590), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 116/228 (50%), Positives = 147/228 (64%), Gaps = 44/228 (19%)
Query: 6 CMIGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPK- 64
C IGPSILNSDL+NL +E +LDSGADYLHLDVMDG FVPN+TFGHPVV+ LR ++ +
Sbjct: 5 CKIGPSILNSDLANLGAECLRMLDSGADYLHLDVMDGHFVPNITFGHPVVESLRKQLGQD 64
Query: 65 AFFETHMMVQNPQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIE 124
FF+ HMMV P+QW++PMA A +QYTFH+E +N +I+ I+E GMKV
Sbjct: 65 PFFDMHMMVSKPEQWVKPMAVAGANQYTFHLEATENPGALIKDIRENGMKV--------- 115
Query: 125 PMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIM 184
GLAIKP T V+ +A + D+ L+M
Sbjct: 116 ----------------------------------GLAIKPGTSVEYLAPWANQIDMALVM 141
Query: 185 TVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKC 232
TVEPGFGGQKFM+DMMPKV WLR +P+L+IEVDGGVGP+T+ +CA+
Sbjct: 142 TVEPGFGGQKFMEDMMPKVHWLRTQFPSLDIEVDGGVGPDTVHKCAEA 189
>sp|Q5R5Y2|RPE_PONAB Ribulose-phosphate 3-epimerase OS=Pongo abelii GN=RPE PE=2 SV=1
Length = 228
Score = 230 bits (586), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 115/228 (50%), Positives = 146/228 (64%), Gaps = 44/228 (19%)
Query: 6 CMIGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPK- 64
C IGPSILNSDL+NL +E +LDSGADYLHLDVMDG FVPN+TFGHPVV+ LR ++ +
Sbjct: 5 CKIGPSILNSDLANLGAECLRMLDSGADYLHLDVMDGHFVPNITFGHPVVESLRKQLGQD 64
Query: 65 AFFETHMMVQNPQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIE 124
FF+ HMMV P+QW++PMA A +QY FH+E +N +I+ I+E GMKV
Sbjct: 65 PFFDMHMMVSKPEQWVKPMAVAGANQYAFHLEATENPGALIKDIRENGMKV--------- 115
Query: 125 PMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIM 184
GLAIKP T V+ +A + D+ L+M
Sbjct: 116 ----------------------------------GLAIKPGTSVEYLAPWANQIDMALVM 141
Query: 185 TVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKC 232
TVEPGFGGQKFM+DMMPKV WLR +P+L+IEVDGGVGP+T+ +CA+
Sbjct: 142 TVEPGFGGQKFMEDMMPKVHWLRTQFPSLDIEVDGGVGPDTVHKCAEA 189
>sp|P46969|RPE_YEAST Ribulose-phosphate 3-epimerase OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RPE1 PE=1 SV=1
Length = 238
Score = 186 bits (473), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 98/240 (40%), Positives = 132/240 (55%), Gaps = 55/240 (22%)
Query: 4 VQCMIGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIP 63
V+ +I PSIL SD +NL E ++++GAD+LH+DVMDG FVPN+T G P+V LR +P
Sbjct: 2 VKPIIAPSILASDFANLGCECHKVINAGADWLHIDVMDGHFVPNITLGQPIVTSLRRSVP 61
Query: 64 K------------AFFETHMMVQNPQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEA 111
+ AFF+ HMMV+NP++
Sbjct: 62 RPGDASNTEKKPTAFFDCHMMVENPEK--------------------------------- 88
Query: 112 GMKVGQVLQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVI 171
W++ A DQ+TFH E + +++ IK G+K AIKP T VDV+
Sbjct: 89 ----------WVDDFAKCGADQFTFHYEATQDPLHLVKLIKSKGIKAACAIKPGTSVDVL 138
Query: 172 AEYIESADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAK 231
E D+ L+MTVEPGFGGQKFM+DMMPKV+ LR +P LNI+VDGG+G TI + AK
Sbjct: 139 FELAPHLDMALVMTVEPGFGGQKFMEDMMPKVETLRAKFPHLNIQVDGGLGKETIPKAAK 198
>sp|Q6FL81|RPE_CANGA Ribulose-phosphate 3-epimerase OS=Candida glabrata (strain ATCC
2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65)
GN=RPE1 PE=3 SV=1
Length = 246
Score = 185 bits (469), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 99/244 (40%), Positives = 131/244 (53%), Gaps = 58/244 (23%)
Query: 4 VQCMIGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIP 63
V+ +I PSIL SD +NL E +++SGA++LH+DVMDG FVPN+T G P+V LR +P
Sbjct: 2 VKPIIAPSILASDFANLGCECHRVINSGAEWLHIDVMDGHFVPNITLGQPIVTSLRRAVP 61
Query: 64 K---------------AFFETHMMVQNPQQWIEPMADANVDQYTFHVEPVDNVPQVIRQI 108
+ AFF+ HMMV+ P++
Sbjct: 62 RSQEEEKASGEVARPTAFFDCHMMVEEPEK------------------------------ 91
Query: 109 KEAGMKVGQVLQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPV 168
W+ A A DQ+TFH E + +++ IKE G+K AIKP TPV
Sbjct: 92 -------------WVADFAKAGADQFTFHYEATKDPLSLVKLIKENGIKAACAIKPGTPV 138
Query: 169 DVIAEYIESADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDE 228
DV+ E D+ L+MTVEPGFGGQKFM DMMPKV+ LR +P +NI+VDGG+G TI
Sbjct: 139 DVLFELAPYLDMALVMTVEPGFGGQKFMPDMMPKVEALRTKFPHMNIQVDGGLGKETIGV 198
Query: 229 CAKC 232
AK
Sbjct: 199 AAKA 202
>sp|Q755M2|RPE_ASHGO Ribulose-phosphate 3-epimerase OS=Ashbya gossypii (strain ATCC
10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=RPE1
PE=3 SV=1
Length = 239
Score = 182 bits (463), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 97/239 (40%), Positives = 130/239 (54%), Gaps = 53/239 (22%)
Query: 4 VQCMIGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIP 63
V+ +I PSIL SD +NL ++++GA++LH+DVMDG FVPN+T G P+VK LR +P
Sbjct: 2 VKPIIAPSILASDFANLECGCHRVINAGAEWLHIDVMDGHFVPNITLGPPIVKSLRKAVP 61
Query: 64 ----------KAFFETHMMVQNPQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGM 113
KAFF+ HMMV P++
Sbjct: 62 RVGDKESDKPKAFFDCHMMVAEPEK----------------------------------- 86
Query: 114 KVGQVLQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAE 173
W++ + DQ+TFH E N ++++ IK G++ AIKP TPVDV+ E
Sbjct: 87 --------WVDVFVENGADQFTFHYEATKNPLELVKLIKSRGIRAACAIKPDTPVDVLFE 138
Query: 174 YIESADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKC 232
D+ L+MTVEPGFGGQKFM DMMPKV LRE +P L+I+VDGG+G TI AK
Sbjct: 139 LAPYLDMALVMTVEPGFGGQKFMPDMMPKVAALREKFPQLDIQVDGGLGKETIPHAAKA 197
>sp|Q9SE42|RPE1_ORYSJ Ribulose-phosphate 3-epimerase, cytoplasmic isoform OS=Oryza sativa
subsp. japonica GN=Os09g0505700 PE=1 SV=1
Length = 228
Score = 181 bits (460), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 96/229 (41%), Positives = 137/229 (59%), Gaps = 48/229 (20%)
Query: 8 IGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFF 67
I PS+L+SD +NL +E+ ++ GAD+LH+D+MDG FVPNLT G PV++ LR K KA+
Sbjct: 9 IAPSMLSSDFANLAAEADRMVRLGADWLHMDIMDGHFVPNLTIGAPVIQSLR-KHTKAYL 67
Query: 68 ETHMMVQNPQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPMA 127
+ H+MV NP D++EP+A
Sbjct: 68 DCHLMVTNPS-------------------------------------------DYVEPLA 84
Query: 128 DANVDQYTFHVE-PVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIES---ADLVLI 183
A +TFH+E DN ++I+ IK GM+ G++++P TPV+ + +E+ +LVL+
Sbjct: 85 KAGASGFTFHIEVSRDNWQELIQSIKAKGMRPGVSLRPGTPVEEVFPLVEAENPVELVLV 144
Query: 184 MTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKC 232
MTVEPGFGGQKFM +MM KV+ LR+ YP+L+IEVDGG+GP+TID A
Sbjct: 145 MTVEPGFGGQKFMPEMMEKVRALRKKYPSLDIEVDGGLGPSTIDVAASA 193
>sp|O14105|RPE_SCHPO Ribulose-phosphate 3-epimerase OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=SPAC31G5.05c PE=3 SV=1
Length = 228
Score = 176 bits (446), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 96/229 (41%), Positives = 128/229 (55%), Gaps = 45/229 (19%)
Query: 4 VQCMIGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIP 63
VQ I PS+L D +NL E +L G+D+LH+DVMD FVPNLT G VVK +RN
Sbjct: 2 VQAKIAPSLLAGDFANLEKEVGRMLKYGSDWLHVDVMDAQFVPNLTIGPIVVKAMRNHYT 61
Query: 64 K--AFFETHMMVQNPQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQD 121
K AFF+ H+MV P+++I DQ
Sbjct: 62 KEEAFFDCHLMVIEPERYI--------DQ------------------------------- 82
Query: 122 WIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLV 181
+ADA + FH E + ++I + E GM VG A+KPKTPV+VI ++E D+V
Sbjct: 83 ----LADAGASLFCFHYEATEKHEEIISRAHEKGMLVGCALKPKTPVEVILPFVEKLDMV 138
Query: 182 LIMTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECA 230
L+MTVEPG GGQ FM + +PKV++LR+ YPTLN+EVDGG+ T+D A
Sbjct: 139 LVMTVEPGKGGQSFMPECLPKVEFLRKKYPTLNVEVDGGLSLKTVDAAA 187
>sp|P65760|RPE_MYCTU Ribulose-phosphate 3-epimerase OS=Mycobacterium tuberculosis GN=rpe
PE=3 SV=1
Length = 229
Score = 133 bits (334), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 79/232 (34%), Positives = 120/232 (51%), Gaps = 54/232 (23%)
Query: 7 MIGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLR--NKIPK 64
+I PSIL +D + L E+ + +GAD+LH+DVMDG FVPNLT G PVV+ L IP
Sbjct: 9 LIAPSILAADFARLADEAAAV--NGADWLHVDVMDGHFVPNLTIGLPVVESLLAVTDIP- 65
Query: 65 AFFETHMMVQNPQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIE 124
+ H+M+ NP + W
Sbjct: 66 --MDCHLMIDNPDR-------------------------------------------WAP 80
Query: 125 PMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIM 184
P A+A TFH E DN V R I+ AG K G+++KP TP++ + + D +L+M
Sbjct: 81 PYAEAGAYNVTFHAEATDNPVGVARDIRAAGAKAGISVKPGTPLEPYLDILPHFDTLLVM 140
Query: 185 TVEPGFGGQKFMQDMMPKVKWLRE----NYPTLNIEVDGGVGPNTIDECAKC 232
+VEPGFGGQ+F+ +++ KV+ +R+ T+ +E+DGG+ +TI++ A+
Sbjct: 141 SVEPGFGGQRFIPEVLSKVRAVRKMVDAGELTILVEIDGGINDDTIEQAAEA 192
>sp|P65761|RPE_MYCBO Ribulose-phosphate 3-epimerase OS=Mycobacterium bovis (strain ATCC
BAA-935 / AF2122/97) GN=rpe PE=3 SV=1
Length = 229
Score = 133 bits (334), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 79/232 (34%), Positives = 120/232 (51%), Gaps = 54/232 (23%)
Query: 7 MIGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLR--NKIPK 64
+I PSIL +D + L E+ + +GAD+LH+DVMDG FVPNLT G PVV+ L IP
Sbjct: 9 LIAPSILAADFARLADEAAAV--NGADWLHVDVMDGHFVPNLTIGLPVVESLLAVTDIP- 65
Query: 65 AFFETHMMVQNPQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIE 124
+ H+M+ NP + W
Sbjct: 66 --MDCHLMIDNPDR-------------------------------------------WAP 80
Query: 125 PMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIM 184
P A+A TFH E DN V R I+ AG K G+++KP TP++ + + D +L+M
Sbjct: 81 PYAEAGAYNVTFHAEATDNPVGVARDIRAAGAKAGISVKPGTPLEPYLDILPHFDTLLVM 140
Query: 185 TVEPGFGGQKFMQDMMPKVKWLRE----NYPTLNIEVDGGVGPNTIDECAKC 232
+VEPGFGGQ+F+ +++ KV+ +R+ T+ +E+DGG+ +TI++ A+
Sbjct: 141 SVEPGFGGQRFIPEVLSKVRAVRKMVDAGELTILVEIDGGINDDTIEQAAEA 192
>sp|Q9L0Z5|RPE_STRCO Ribulose-phosphate 3-epimerase OS=Streptomyces coelicolor (strain
ATCC BAA-471 / A3(2) / M145) GN=rpe PE=3 SV=1
Length = 228
Score = 130 bits (327), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 77/227 (33%), Positives = 114/227 (50%), Gaps = 50/227 (22%)
Query: 8 IGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFF 67
I PSIL++D + L E++ + GAD+LH+DVMD FVPNLT G PVV+ L +
Sbjct: 5 INPSILSADFARLADEAKAV--EGADWLHVDVMDNHFVPNLTLGVPVVESL-ARATDTPL 61
Query: 68 ETHMMVQNPQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPMA 127
+ H+M++ P +W PQ +
Sbjct: 62 DCHLMIEAPDRW---------------------APQYV---------------------- 78
Query: 128 DANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIMTVE 187
+A TFH E ++ R+I+ G + +A+KP TPV+ + + D++LIMTVE
Sbjct: 79 EAGAGSVTFHAEAAAAPVRLAREIRAKGARASMALKPATPVEPYEDLLPELDMLLIMTVE 138
Query: 188 PGFGGQKFMQDMMPKVKWLRE----NYPTLNIEVDGGVGPNTIDECA 230
PGFGGQ F+ M+PK++ RE + L ++VDGGV TI+ CA
Sbjct: 139 PGFGGQAFLDIMLPKIRRTRELIKKHGLELWLQVDGGVSAATIERCA 185
>sp|Q9PKR7|RPE_CHLMU Ribulose-phosphate 3-epimerase OS=Chlamydia muridarum (strain MoPn
/ Nigg) GN=rpe PE=3 SV=1
Length = 228
Score = 130 bits (327), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 67/229 (29%), Positives = 117/229 (51%), Gaps = 50/229 (21%)
Query: 7 MIGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAF 66
+I PSI+ +DL+ L ++N+ +SGA+ +H+DVMDG FVPN+TFG ++ + N+ F
Sbjct: 7 LIAPSIMGADLACLGDAARNIEESGANLIHIDVMDGHFVPNITFGPGIIAAI-NRSTDLF 65
Query: 67 FETHMMVQNPQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPM 126
E H M+ P +++E A D+ H E +N+ +++ I++ G
Sbjct: 66 LEVHAMIYTPFEFVEAFVKAGADRIIVHFEAAENLKEILDYIRKCG-------------- 111
Query: 127 ADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIMTV 186
++ G+A P+T ++ I+ +I D++L+M+V
Sbjct: 112 -----------------------------VQAGIAFSPETSIEFISAFIPLCDVILLMSV 142
Query: 187 EPGFGGQKFMQDMMPKVKWLRENYPTLN------IEVDGGVGPNTIDEC 229
+PGF GQKF+ D + K++++R+ TL IEVDGG+ + C
Sbjct: 143 QPGFCGQKFIPDTIEKIRFVRQAIQTLGKEGSCLIEVDGGIDEESARAC 191
>sp|O84123|RPE_CHLTR Ribulose-phosphate 3-epimerase OS=Chlamydia trachomatis (strain
D/UW-3/Cx) GN=rpe PE=3 SV=1
Length = 233
Score = 130 bits (326), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 66/229 (28%), Positives = 116/229 (50%), Gaps = 50/229 (21%)
Query: 7 MIGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAF 66
++ PSI+ +DL+ + E++N+ +SGAD +H+DVMDG FVPN+TFG VV + N+ + F
Sbjct: 12 LVAPSIMGADLACIGREARNIEESGADLIHIDVMDGHFVPNITFGPGVVAAI-NRSTELF 70
Query: 67 FETHMMVQNPQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPM 126
E H M+ P +++E A D+ H E +N+ ++I I++ G
Sbjct: 71 LEVHAMIYTPFEFVEAFVKAGADRIIVHFEAAENIKEIISYIQKCG-------------- 116
Query: 127 ADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIMTV 186
++ G+A P+T ++ + +I D++L+M+V
Sbjct: 117 -----------------------------VQAGVAFSPETSIEFVTSFIPLCDVILLMSV 147
Query: 187 EPGFGGQKFMQDMMPKVKWLRENYPTLN------IEVDGGVGPNTIDEC 229
PGF GQKF+ D + +++++++ L IEVDGG+ + C
Sbjct: 148 HPGFCGQKFIPDTIERIQFVKQAIQVLGREGSCLIEVDGGIDKESARAC 196
>sp|Q9CCP9|RPE_MYCLE Ribulose-phosphate 3-epimerase OS=Mycobacterium leprae (strain TN)
GN=rpe PE=3 SV=1
Length = 224
Score = 127 bits (319), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 78/232 (33%), Positives = 117/232 (50%), Gaps = 54/232 (23%)
Query: 7 MIGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCL--RNKIPK 64
+I PSIL +D + L E+ + + AD+LH+DVMDG FVPNLT G PVV+ L + IP
Sbjct: 4 LIAPSILAADFARLTDEAAVV--ASADWLHVDVMDGHFVPNLTIGLPVVQSLLAASDIP- 60
Query: 65 AFFETHMMVQNPQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIE 124
+ H+M+ NP + W
Sbjct: 61 --MDCHLMIDNPDR-------------------------------------------WAP 75
Query: 125 PMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIM 184
P A+A TFH E DN V I+ AG K G+ +KP TP++ + + D +LIM
Sbjct: 76 PYAEAGAYNVTFHAEATDNPVGVAHDIRTAGAKAGIGVKPGTPLNPYLDILPHFDTLLIM 135
Query: 185 TVEPGFGGQKFMQDMMPKVKWLRE----NYPTLNIEVDGGVGPNTIDECAKC 232
+VEPGFGGQ F+ +++ KV+ +R+ T+ +E+DGG+ +TI++ A+
Sbjct: 136 SVEPGFGGQAFIPEVLSKVRTVRKMVDAGELTILVEIDGGINADTIEQAAEA 187
>sp|P51012|RPE_RHOCA Ribulose-phosphate 3-epimerase OS=Rhodobacter capsulatus GN=cbbE
PE=3 SV=2
Length = 228
Score = 126 bits (317), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 78/221 (35%), Positives = 112/221 (50%), Gaps = 49/221 (22%)
Query: 8 IGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFF 67
I PSIL++D ++ E Q + GAD++H+DVMDG FVPNLTFG P V R + K
Sbjct: 9 IAPSILSADFADFGREIQAIEAQGADWVHVDVMDGHFVPNLTFGPPAVAAFRKHV-KTVM 67
Query: 68 ETHMMVQNPQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPMA 127
+ H+M+ +I+ A A D T HVE ++ + ++ I+ AGM
Sbjct: 68 DVHLMISPVDAYIDAYAQAGADVLTAHVEAGPHIHRTLQAIRAAGM-------------- 113
Query: 128 DANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIMTVE 187
K G+AI P TP + I ++ AD+V +MTV
Sbjct: 114 -----------------------------KSGVAINPGTPAEAIEHVLDIADVVCVMTVN 144
Query: 188 PGFGGQKFMQDMMPKVKWLRE---NYPTLNIEVDGGVGPNT 225
PGFGGQK++ DM KV+ LR + P ++IE+DGG+ P T
Sbjct: 145 PGFGGQKYI-DMTAKVRKLRAMIGDRP-VHIEIDGGMDPVT 183
>sp|O66107|RPE_TREPA Ribulose-phosphate 3-epimerase OS=Treponema pallidum (strain
Nichols) GN=rpe PE=3 SV=1
Length = 218
Score = 126 bits (316), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 78/225 (34%), Positives = 109/225 (48%), Gaps = 52/225 (23%)
Query: 8 IGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNK--IPKA 65
+ PS+L++D S L L GA ++HLDVMDG FVPNLTFG PV++CLR+K +P
Sbjct: 7 LAPSLLSADFSALDRALVYLEAHGAQWVHLDVMDGHFVPNLTFGAPVLRCLRSKTHLP-- 64
Query: 66 FFETHMMVQNPQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEP 125
F+ H+MV P D IE
Sbjct: 65 -FDVHLMVSRPA-------------------------------------------DLIED 80
Query: 126 MADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIMT 185
A D TFH+E + ++I I+ G+KVG+++ P TPV ++E + DLVL+MT
Sbjct: 81 FVQAGADFLTFHIEAEVHAHRLIHAIRGRGVKVGISLVPSTPVAALSEVLPFVDLVLVMT 140
Query: 186 VEPGFGGQKFMQDMMPKVKWL----RENYPTLNIEVDGGVGPNTI 226
V PGF GQ+ + + KV L E + I VDGG+ T+
Sbjct: 141 VNPGFSGQQMIAHCLSKVSALVQMRTERGYSYMISVDGGIDCRTL 185
>sp|O34557|RPE_BACSU Ribulose-phosphate 3-epimerase OS=Bacillus subtilis (strain 168)
GN=rpe PE=3 SV=1
Length = 217
Score = 121 bits (303), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 74/225 (32%), Positives = 112/225 (49%), Gaps = 53/225 (23%)
Query: 8 IGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLR--NKIPKA 65
+ PSIL++D + L +E +++ GAD +H+DVMDG FVPN+T G +V+ +R +P
Sbjct: 4 VAPSILSADFAALGNEIKDVEKGGADCIHIDVMDGHFVPNITIGPLIVEAVRPVTDLP-- 61
Query: 66 FFETHMMVQNPQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEP 125
+ H+M++ P ++I A
Sbjct: 62 -LDVHLMIEEPDRYIPAFAK---------------------------------------- 80
Query: 126 MADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIMT 185
A D + H E ++ + I+ IKE G+K G+ + P TPV VI + DLVL+MT
Sbjct: 81 ---AGADILSVHAEACPHLHRTIQLIKEQGVKAGVVLNPHTPVQVIEHVFDDLDLVLLMT 137
Query: 186 VEPGFGGQKFMQDMMPKVKWLR-----ENYPTLNIEVDGGVGPNT 225
V PGFGGQKF+ ++PK+K ++ + L IEVDGGV T
Sbjct: 138 VNPGFGGQKFIHSVLPKIKEVKRMADEKGKKDLLIEVDGGVNKET 182
>sp|Q9Z8Z9|RPE_CHLPN Ribulose-phosphate 3-epimerase OS=Chlamydia pneumoniae GN=rpe PE=3
SV=1
Length = 229
Score = 120 bits (302), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 65/229 (28%), Positives = 112/229 (48%), Gaps = 50/229 (21%)
Query: 7 MIGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAF 66
++GPSI+ +DL+ L E++ L +G+D++H+D+MDG FVPNLTFG ++ + N+ F
Sbjct: 8 LVGPSIMGADLTCLGVEAKKLEQAGSDFIHIDIMDGHFVPNLTFGPGIIAAI-NRSTDLF 66
Query: 67 FETHMMVQNPQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPM 126
E H M+ NP ++IE + D+ H E +++ +++ IK+ G
Sbjct: 67 LEVHAMIYNPFEFIESFVRSGADRIIVHFEASEDIKELLSYIKKCG-------------- 112
Query: 127 ADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIMTV 186
++ GLA P T ++ + ++ D+V++M+V
Sbjct: 113 -----------------------------VQAGLAFSPDTSIEFLPSFLPFCDVVVLMSV 143
Query: 187 EPGFGGQKFMQDMMPKVKWLRENYPTLN------IEVDGGVGPNTIDEC 229
PGF GQ F+ + + K+ + R TL IEVDGG+ + C
Sbjct: 144 YPGFTGQSFLPNTIEKIAFARHAIKTLGLKDSCLIEVDGGIDQQSAPLC 192
>sp|Q8K940|RPE_BUCAP Ribulose-phosphate 3-epimerase OS=Buchnera aphidicola subsp.
Schizaphis graminum (strain Sg) GN=rpe PE=3 SV=1
Length = 228
Score = 120 bits (302), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 75/230 (32%), Positives = 114/230 (49%), Gaps = 47/230 (20%)
Query: 5 QCMIGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPK 64
+ + SIL++D + L +++ +D+G+D++H DVMD +VPNLT G ++K LRN
Sbjct: 3 KFFLASSILSADFARLGEDTKKAIDAGSDWIHFDVMDNHYVPNLTMGPMILKALRNYNIT 62
Query: 65 AFFETHMMVQNPQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIE 124
+ H+MV+ PVDN+ I Q EAG
Sbjct: 63 VPIDVHLMVK----------------------PVDNL---IPQFAEAG------------ 85
Query: 125 PMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIM 184
D TFH E D++ + + IKE G K GLA+ P T ++ + +E DL+L+M
Sbjct: 86 ------ADFITFHPESTDHIDRTLNLIKECGCKAGLALNPATSLNFLDYVMEKLDLILLM 139
Query: 185 TVEPGFGGQKFMQDMMPKVKWLRE----NYPTLNIEVDGGVGPNTIDECA 230
+V PGFG Q F+ K++ +R+ N + +EVDGGV I E A
Sbjct: 140 SVNPGFGNQSFLPTSFNKLREVRKKIELNSSNILLEVDGGVKLENISEVA 189
>sp|P74061|RPE_SYNY3 Ribulose-phosphate 3-epimerase OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=rpe PE=1 SV=3
Length = 230
Score = 118 bits (295), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 71/224 (31%), Positives = 113/224 (50%), Gaps = 50/224 (22%)
Query: 7 MIGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAF 66
++ PSIL++D S L E + + ++GAD++H+DVMDG FVPN+T G +V +R + K
Sbjct: 6 VVAPSILSADFSRLGEEIKAVDEAGADWIHVDVMDGRFVPNITIGPLIVDAIR-PLTKKT 64
Query: 67 FETHMMVQNPQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPM 126
+ H+M+ P++++ E
Sbjct: 65 LDVHLMIVEPEKYV-------------------------------------------EDF 81
Query: 127 ADANVDQYTFHVE--PVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIM 184
A A D + HVE ++ + + QI+E G K G + P TP+D + + DL+LIM
Sbjct: 82 AKAGADIISVHVEHNASPHLHRTLCQIRELGKKAGAVLNPSTPLDFLEYVLPVCDLILIM 141
Query: 185 TVEPGFGGQKFMQDMMPKVKWLRENYPTLN----IEVDGGVGPN 224
+V PGFGGQ F+ +++PK++ LR+ IEVDGG+ PN
Sbjct: 142 SVNPGFGGQSFIPEVLPKIRALRQMCDERGLDPWIEVDGGLKPN 185
>sp|P57603|RPE_BUCAI Ribulose-phosphate 3-epimerase OS=Buchnera aphidicola subsp.
Acyrthosiphon pisum (strain APS) GN=rpe PE=3 SV=1
Length = 228
Score = 116 bits (291), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 72/231 (31%), Positives = 114/231 (49%), Gaps = 49/231 (21%)
Query: 5 QCMIGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPK 64
+ + PSIL++D + L + + ++D+G+D +H DVMD +VPNL+ G +++ LRN
Sbjct: 3 KFFLAPSILSADFARLGEDIKKVIDAGSDLIHFDVMDNHYVPNLSMGPMILESLRNYNIT 62
Query: 65 AFFETHMMVQNPQQWIEPMADANVDQYTFHVEPVDN-VPQVIRQIKEAGMKVGQVLQDWI 123
A + H+MV+ PVDN +PQ
Sbjct: 63 APIDVHLMVK----------------------PVDNLIPQ-------------------- 80
Query: 124 EPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLI 183
A A TFH E ++ + + IKE G K GLA P TP++ + +E DL+L+
Sbjct: 81 --FAKAGATFITFHPEATLHIERTLNLIKENGCKAGLAFNPATPLNFLDYILEKLDLILL 138
Query: 184 MTVEPGFGGQKFMQDMMPKVKWLRE----NYPTLNIEVDGGVGPNTIDECA 230
M+V PGFG Q F+ K++ +R+ N+ + +EVDGGV + I + A
Sbjct: 139 MSVNPGFGNQSFLPSTFNKLREVRKIIDANFSDILLEVDGGVKLDNIADIA 189
>sp|Q43843|RPE_SOLTU Ribulose-phosphate 3-epimerase, chloroplastic (Fragment) OS=Solanum
tuberosum PE=1 SV=1
Length = 280
Score = 114 bits (286), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 75/227 (33%), Positives = 107/227 (47%), Gaps = 46/227 (20%)
Query: 1 MSHVQCMIGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRN 60
S ++ PSIL+++ S L + + + +G D++H+DVMDG FVPN+T G VV LR
Sbjct: 52 FSKSDIIVSPSILSANFSKLGEQVKAIEQAGCDWIHVDVMDGRFVPNITIGPLVVDSLR- 110
Query: 61 KIPKAFFETHMMVQNPQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQ 120
I + H+M+ P Q + A D + H E
Sbjct: 111 PITDLPLDVHLMIVEPDQRVPDFIKAGADIVSVHCE------------------------ 146
Query: 121 DWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADL 180
T H+ + I QIK G K G+ + P TP+ I +++ DL
Sbjct: 147 -----------QSSTIHLH------RTINQIKSLGAKAGVVLNPGTPLTAIEYVLDAVDL 189
Query: 181 VLIMTVEPGFGGQKFMQDMMPKVKWLRE--NYPTLN--IEVDGGVGP 223
VLIM+V PGFGGQ F++ + K+ LR+ LN IEVDGGVGP
Sbjct: 190 VLIMSVNPGFGGQSFIESQVKKISDLRKICAERGLNPWIEVDGGVGP 236
>sp|P0AG10|RPE_SHIFL Ribulose-phosphate 3-epimerase OS=Shigella flexneri GN=rpe PE=3
SV=1
Length = 225
Score = 114 bits (286), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 73/232 (31%), Positives = 109/232 (46%), Gaps = 47/232 (20%)
Query: 5 QCMIGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPK 64
Q +I PSIL++D + L ++ L +GAD +H DVMD +VPNLT G V+K LRN
Sbjct: 3 QYLIAPSILSADFARLGEDTAKALAAGADVVHFDVMDNHYVPNLTIGPMVLKSLRNYGIT 62
Query: 65 AFFETHMMVQNPQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIE 124
A + H+MV+ + + A A TFH E ++V + ++ IKE G K
Sbjct: 63 APIDVHLMVKPVDRIVPDFAAAGASIITFHPEASEHVDRTLQLIKENGCK---------- 112
Query: 125 PMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIM 184
GL P TP+ + ++ D++L+M
Sbjct: 113 ---------------------------------AGLVFNPATPLSYLDYVMDKLDVILLM 139
Query: 185 TVEPGFGGQKFMQDMMPKVKWLR----ENYPTLNIEVDGGVGPNTIDECAKC 232
+V PGFGGQ F+ + K++ +R E+ + +EVDGGV N I E A
Sbjct: 140 SVNPGFGGQSFIPQTLDKLREVRRRIDESGFDIRLEVDGGVKVNNIGEIAAA 191
>sp|P0AG07|RPE_ECOLI Ribulose-phosphate 3-epimerase OS=Escherichia coli (strain K12)
GN=rpe PE=1 SV=1
Length = 225
Score = 114 bits (286), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 73/232 (31%), Positives = 109/232 (46%), Gaps = 47/232 (20%)
Query: 5 QCMIGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPK 64
Q +I PSIL++D + L ++ L +GAD +H DVMD +VPNLT G V+K LRN
Sbjct: 3 QYLIAPSILSADFARLGEDTAKALAAGADVVHFDVMDNHYVPNLTIGPMVLKSLRNYGIT 62
Query: 65 AFFETHMMVQNPQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIE 124
A + H+MV+ + + A A TFH E ++V + ++ IKE G K
Sbjct: 63 APIDVHLMVKPVDRIVPDFAAAGASIITFHPEASEHVDRTLQLIKENGCK---------- 112
Query: 125 PMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIM 184
GL P TP+ + ++ D++L+M
Sbjct: 113 ---------------------------------AGLVFNPATPLSYLDYVMDKLDVILLM 139
Query: 185 TVEPGFGGQKFMQDMMPKVKWLR----ENYPTLNIEVDGGVGPNTIDECAKC 232
+V PGFGGQ F+ + K++ +R E+ + +EVDGGV N I E A
Sbjct: 140 SVNPGFGGQSFIPQTLDKLREVRRRIDESGFDIRLEVDGGVKVNNIGEIAAA 191
>sp|P0AG08|RPE_ECOL6 Ribulose-phosphate 3-epimerase OS=Escherichia coli O6:H1 (strain
CFT073 / ATCC 700928 / UPEC) GN=rpe PE=3 SV=1
Length = 225
Score = 114 bits (286), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 73/232 (31%), Positives = 109/232 (46%), Gaps = 47/232 (20%)
Query: 5 QCMIGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPK 64
Q +I PSIL++D + L ++ L +GAD +H DVMD +VPNLT G V+K LRN
Sbjct: 3 QYLIAPSILSADFARLGEDTAKALAAGADVVHFDVMDNHYVPNLTIGPMVLKSLRNYGIT 62
Query: 65 AFFETHMMVQNPQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIE 124
A + H+MV+ + + A A TFH E ++V + ++ IKE G K
Sbjct: 63 APIDVHLMVKPVDRIVPDFAAAGASIITFHPEASEHVDRTLQLIKENGCK---------- 112
Query: 125 PMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIM 184
GL P TP+ + ++ D++L+M
Sbjct: 113 ---------------------------------AGLVFNPATPLSYLDYVMDKLDVILLM 139
Query: 185 TVEPGFGGQKFMQDMMPKVKWLR----ENYPTLNIEVDGGVGPNTIDECAKC 232
+V PGFGGQ F+ + K++ +R E+ + +EVDGGV N I E A
Sbjct: 140 SVNPGFGGQSFIPQTLDKLREVRRRIDESGFDIRLEVDGGVKVNNIGEIAAA 191
>sp|P0AG09|RPE_ECO57 Ribulose-phosphate 3-epimerase OS=Escherichia coli O157:H7 GN=rpe
PE=3 SV=1
Length = 225
Score = 114 bits (286), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 73/232 (31%), Positives = 109/232 (46%), Gaps = 47/232 (20%)
Query: 5 QCMIGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPK 64
Q +I PSIL++D + L ++ L +GAD +H DVMD +VPNLT G V+K LRN
Sbjct: 3 QYLIAPSILSADFARLGEDTAKALAAGADVVHFDVMDNHYVPNLTIGPMVLKSLRNYGIT 62
Query: 65 AFFETHMMVQNPQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIE 124
A + H+MV+ + + A A TFH E ++V + ++ IKE G K
Sbjct: 63 APIDVHLMVKPVDRIVPDFAAAGASIITFHPEASEHVDRTLQLIKENGCK---------- 112
Query: 125 PMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIM 184
GL P TP+ + ++ D++L+M
Sbjct: 113 ---------------------------------AGLVFNPATPLSYLDYVMDKLDVILLM 139
Query: 185 TVEPGFGGQKFMQDMMPKVKWLR----ENYPTLNIEVDGGVGPNTIDECAKC 232
+V PGFGGQ F+ + K++ +R E+ + +EVDGGV N I E A
Sbjct: 140 SVNPGFGGQSFIPQTLDKLREVRRRIDESGFDIRLEVDGGVKVNNIGEIAAA 191
>sp|P44756|RPE_HAEIN Ribulose-phosphate 3-epimerase OS=Haemophilus influenzae (strain
ATCC 51907 / DSM 11121 / KW20 / Rd) GN=rpe PE=3 SV=1
Length = 224
Score = 114 bits (284), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 71/230 (30%), Positives = 111/230 (48%), Gaps = 47/230 (20%)
Query: 7 MIGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAF 66
+I PSIL++DL+ L + QN+L++GAD +H DVMD +VPNLTFG V + LR+ A
Sbjct: 5 LIAPSILSADLARLGDDVQNVLNAGADVIHFDVMDNHYVPNLTFGPAVCQALRDYGITAP 64
Query: 67 FETHMMVQNPQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPM 126
+ H+MV+ + I A A + TFH E +++ + ++ I++ G K
Sbjct: 65 IDVHLMVKPVDRIIPDFAKAGANYITFHPESSEHIDRSLQLIRDCGCK------------ 112
Query: 127 ADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIMTV 186
GL P P+ + ++ D+VL+M+V
Sbjct: 113 -------------------------------SGLVFNPAMPLSYLDYVLDKVDVVLLMSV 141
Query: 187 EPGFGGQKFMQDMMPKVKWLR----ENYPTLNIEVDGGVGPNTIDECAKC 232
PGFGGQ F+ + K++ R E+ + +EVDGGV + I E A
Sbjct: 142 NPGFGGQSFIPATLKKLQQARKIIDESGYDIRLEVDGGVKVDNIAEIAAA 191
>sp|Q89A59|RPE_BUCBP Ribulose-phosphate 3-epimerase OS=Buchnera aphidicola subsp.
Baizongia pistaciae (strain Bp) GN=rpe PE=3 SV=1
Length = 228
Score = 113 bits (282), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 76/244 (31%), Positives = 121/244 (49%), Gaps = 53/244 (21%)
Query: 5 QCMIGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRN--KI 62
+ ++ S+L+++ S L + ++L SG+D +H DVMD +V NLTFG V++ LR+ KI
Sbjct: 3 KFLLSSSVLSANFSRLGEDIFDVLKSGSDMIHYDVMDNHYVKNLTFGPIVLESLRSVEKI 62
Query: 63 PKAFFETHMMVQNPQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDW 122
+ H+M PVD D
Sbjct: 63 KSMVIDVHLMTC----------------------PVD---------------------DL 79
Query: 123 IEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVL 182
I A +V+ +FH E +NV + I+ IK G KVGLA+ P TP+ V+ ++ DL+L
Sbjct: 80 IIKFAKLDVNIISFHPESTNNVEKTIKLIKSYGCKVGLALNPLTPLCVLDNVLDKIDLIL 139
Query: 183 IMTVEPGFGGQKFMQDMMPKVKWLRE----NYPTLNIEVDGGVGPNTIDECAKCLTGFGG 238
+M+V PGF GQKF+ ++ K++ +RE + + +EVDGG+ + I + A FG
Sbjct: 140 LMSVNPGFPGQKFIPSILNKIRIVRELIDKSKKNILLEVDGGINLSNIFKIA----SFGT 195
Query: 239 QKFM 242
F+
Sbjct: 196 DIFV 199
>sp|P45455|RPE_SERMA Ribulose-phosphate 3-epimerase OS=Serratia marcescens GN=rpe PE=3
SV=1
Length = 210
Score = 111 bits (278), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 69/232 (29%), Positives = 109/232 (46%), Gaps = 47/232 (20%)
Query: 5 QCMIGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPK 64
+ +I PSIL++D + L ++ N+L +G D +H DVMD +VPNLT G V + LRN
Sbjct: 3 KFLIAPSILSADFARLGEDTANVLAAGGDVVHFDVMDNHYVPNLTIGPMVCEALRNYGIT 62
Query: 65 AFFETHMMVQNPQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIE 124
A + H+MV+ + + A A +FH E ++V + I+ IKE G K
Sbjct: 63 APIDVHLMVKPVDRIVPDFAKAGASYISFHPEASEHVDRTIQLIKEHGCK---------- 112
Query: 125 PMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIM 184
GL P TP+ + ++ D++L+M
Sbjct: 113 ---------------------------------AGLVFNPATPLSYLDYVMDKIDVILLM 139
Query: 185 TVEPGFGGQKFMQDMMPKVKWLR----ENYPTLNIEVDGGVGPNTIDECAKC 232
+V PGFGGQ F+ + K++ +R ++ + +EVDGGV + I E A
Sbjct: 140 SVNPGFGGQSFIHGTLDKLRQVRKLIDDSGRDIRLEVDGGVKVDNIAEIAAA 191
>sp|Q9ZTP5|RPE_ORYSJ Ribulose-phosphate 3-epimerase, chloroplastic OS=Oryza sativa
subsp. japonica GN=RPE PE=1 SV=2
Length = 274
Score = 111 bits (278), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 72/224 (32%), Positives = 105/224 (46%), Gaps = 50/224 (22%)
Query: 7 MIGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLR--NKIPK 64
++ PSIL+++ S L + + + +G D++H+DVMDG FVPN+T G VV LR +P
Sbjct: 52 IVSPSILSANFSKLGEQVKAVEVAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLP- 110
Query: 65 AFFETHMMVQNPQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIE 124
+ H+M+ P+Q + A D + H E
Sbjct: 111 --LDVHLMIVEPEQRVPDFIKAGADIVSVHCE---------------------------- 140
Query: 125 PMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIM 184
T H+ + + QIK G K G+ + P TP+ I ++ DLVLIM
Sbjct: 141 -------QSSTIHLH------RTVNQIKSLGAKAGVVLNPATPLTAIDYVLDVVDLVLIM 187
Query: 185 TVEPGFGGQKFMQDMMPKVKWLR----ENYPTLNIEVDGGVGPN 224
+V PGFGGQ F++ + K+ LR E IEVDGGVGP
Sbjct: 188 SVNPGFGGQSFIESQVKKIAELRRLCAEKGVNPWIEVDGGVGPK 231
>sp|O67098|RPE_AQUAE Ribulose-phosphate 3-epimerase OS=Aquifex aeolicus (strain VF5)
GN=rpe PE=3 SV=1
Length = 222
Score = 110 bits (276), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 72/257 (28%), Positives = 118/257 (45%), Gaps = 55/257 (21%)
Query: 7 MIGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAF 66
++ PSIL D + + Q + GAD LH DVMDG FVPN+T G+ ++ +R +
Sbjct: 3 LLAPSILAGDWWCIGEQIQATIRGGADILHYDVMDGHFVPNITAGYEILSHIRKR-ASLP 61
Query: 67 FETHMMVQNPQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPM 126
+ H+M++NP ++I +A + + H+E ++ + ++ IKE G K G V
Sbjct: 62 IDAHLMIENPDKYIPKFVEAGANWISVHIENNYHIHRTLQLIKELGAKAGVV-------- 113
Query: 127 ADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIMTV 186
+ P T + I E + AD VL+M+V
Sbjct: 114 -----------------------------------VNPGTSLSAIEEALYYADYVLLMSV 138
Query: 187 EPGFGGQKFMQDMMPKVKWLRENYPTLN----IEVDGGVGPNTIDECAKC-------LTG 235
PGF GQKF++ + +++ L+E +N IE+DGG+ N I E + +G
Sbjct: 139 NPGFSGQKFIERSIERLRILKEMRDRINPSCLIEIDGGIKENNIAEVVRAGADVVVVGSG 198
Query: 236 FGGQKFMQDMMPKVKWL 252
G K ++ K+K L
Sbjct: 199 IFGAKDIEAQTRKLKSL 215
>sp|P51013|RPE_RHORU Ribulose-phosphate 3-epimerase OS=Rhodospirillum rubrum GN=cbbE
PE=3 SV=2
Length = 225
Score = 107 bits (266), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 71/228 (31%), Positives = 104/228 (45%), Gaps = 50/228 (21%)
Query: 8 IGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLR--NKIPKA 65
I PS+L++D + + +GAD LH DVMD +VPNLT G V LR +P
Sbjct: 7 IAPSLLSADFAISRPRCPSDGRTGADILHFDVMDNHYVPNLTVGPLVCAALRPHTSLP-- 64
Query: 66 FFETHMMVQNPQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEP 125
+ H+M + PVD + I+
Sbjct: 65 -IDVHLMTR----------------------PVDPL---------------------IDS 80
Query: 126 MADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIMT 185
A+A D TFH E D+V + ++ I++ G+K G+A+ P +P+ ++ +E DLVLIM+
Sbjct: 81 FAEAGADMITFHPEASDHVHRSVQMIRKRGLKAGVALNPASPLSLLDHILEDLDLVLIMS 140
Query: 186 VEPGFGGQKFMQDMMPKVKWLR--ENYPTLNIEVDGGVGPNTIDECAK 231
V PGFGGQ F+ +PK+ L VDGGV P A+
Sbjct: 141 VNPGFGGQSFIPSALPKIAALANGRRRACRGDRVDGGVNPADARALAR 188
>sp|Q43157|RPE_SPIOL Ribulose-phosphate 3-epimerase, chloroplastic OS=Spinacia oleracea
GN=RPE PE=1 SV=1
Length = 285
Score = 107 bits (266), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 78/259 (30%), Positives = 115/259 (44%), Gaps = 58/259 (22%)
Query: 1 MSHVQCMIGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRN 60
S ++ PSIL+++ + L + + + +G D++H+DVMDG FVPN+T G VV LR
Sbjct: 57 FSKSDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALR- 115
Query: 61 KIPKAFFETHMMVQNPQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQ 120
P+ D +D + VEP VP I+
Sbjct: 116 ---------------------PVTDLPLDVHLMIVEPEQRVPDFIK-------------- 140
Query: 121 DWIEPMADANVDQYTFHVEPVDNVP--QVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESA 178
A D + H E + + + QIK G K G+ + P TP+ I ++
Sbjct: 141 --------AGADIVSVHCELASTIHLHRTVNQIKSLGAKAGVVLNPGTPLSTIEYVLDVV 192
Query: 179 DLVLIMTVEPGFGGQKFMQDMMPKVKWLR----ENYPTLNIEVDGGVGP----NTIDECA 230
DLVLIM+V PGFGGQ F++ + K+ LR E IEVDGGV P I+ A
Sbjct: 193 DLVLIMSVNPGFGGQSFIESQVKKISDLRKMCVEKGVNPWIEVDGGVTPANAYKVIEAGA 252
Query: 231 KCLTG----FGGQKFMQDM 245
L FG + + + +
Sbjct: 253 NALVAGSAVFGAKDYAEAI 271
>sp|Q58093|RPE_METJA Ribulose-phosphate 3-epimerase OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=rpe PE=3 SV=1
Length = 234
Score = 104 bits (259), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 77/255 (30%), Positives = 116/255 (45%), Gaps = 54/255 (21%)
Query: 8 IGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFF 67
IG SIL++D +L E + ++G D+ H+D+MDG FVPN++ G + K ++ K+ +
Sbjct: 4 IGASILSADFGHLREEIKKAEEAGVDFFHVDMMDGHFVPNISMGIGIAKHVK-KLTELPV 62
Query: 68 ETHMMVQNPQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPMA 127
E H+MV+N ++ + +D TFH+E V ++I +IK G K
Sbjct: 63 EVHLMVENVDLFVNEFEE--MDYITFHIEAVKFPFRIINRIKSIGAK------------- 107
Query: 128 DANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIMTVE 187
P+ +A+ P TP+D I + VL+MTVE
Sbjct: 108 ------------PI------------------VALNPATPLDAIEYILGDVYAVLVMTVE 137
Query: 188 PGFGGQKFMQDMMPKVKWLR----ENYPTLNIEVDGGV----GPNTIDECAKCLTGFGGQ 239
PGF GQKF+ M K++ L+ EN I VDGG+ P + A L
Sbjct: 138 PGFSGQKFIPVMTKKIRKLKSMIVENGYDTKIFVDGGINVETAPLAVKAGADVLVAASAI 197
Query: 240 KFMQDMMPKVKWLRE 254
D+ VK LRE
Sbjct: 198 FGKDDVKTAVKNLRE 212
>sp|P32719|ALSE_ECOLI D-allulose-6-phosphate 3-epimerase OS=Escherichia coli (strain K12)
GN=alsE PE=1 SV=1
Length = 231
Score = 103 bits (257), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 70/226 (30%), Positives = 99/226 (43%), Gaps = 50/226 (22%)
Query: 8 IGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFF 67
I PS++ DL E +DS ADY H+D+MDG FVPNLT P K+
Sbjct: 3 ISPSLMCMDLLKF-KEQIEFIDSHADYFHIDIMDGHFVPNLTLS-PFFVSQVKKLATKPL 60
Query: 68 ETHMMVQNPQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPMA 127
+ H+MV PQ D+I +A
Sbjct: 61 DCHLMVTRPQ-------------------------------------------DYIAQLA 77
Query: 128 DANVDQYTFHVEPVD-NVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIMTV 186
A D T H E ++ ++I +I+ MKVGL + P+TPV+ + YI AD + +MTV
Sbjct: 78 RAGADFITLHPETINGQAFRLIDEIRRHDMKVGLILNPETPVEAMKYYIHKADKITVMTV 137
Query: 187 EPGFGGQKFMQDMMPKV----KWLRENYPTLNIEVDGGVGPNTIDE 228
+PGF GQ F+ +M+ K+ W IEVDG T ++
Sbjct: 138 DPGFAGQPFIPEMLDKLAELKAWREREGLEYEIEVDGSCNQATYEK 183
>sp|Q04539|RPEP_CUPNH Ribulose-phosphate 3-epimerase, plasmid OS=Cupriavidus necator
(strain ATCC 17699 / H16 / DSM 428 / Stanier 337)
GN=cbbEP PE=3 SV=1
Length = 241
Score = 96.7 bits (239), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 69/233 (29%), Positives = 104/233 (44%), Gaps = 52/233 (22%)
Query: 8 IGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFF 67
+ PSIL++D + L E + GAD +H DVMD +V NLT G V + +R
Sbjct: 18 LAPSILSADFARLGEEVCAIEAGGADLVHFDVMDNHYVSNLTIGPLVCEAIR-------- 69
Query: 68 ETHMMVQNPQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPMA 127
P+ +D + VEPVD + I A
Sbjct: 70 --------------PLVSIPIDVHLM-VEPVDAL---------------------IPMFA 93
Query: 128 DANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIMTVE 187
A + +FH E +V + I I++ G K GL + P TP+ + ++ DLVL+M+V
Sbjct: 94 KAGANLISFHPEASRHVDRTIGLIRDHGCKAGLVLNPATPLSWLDHTLDKLDLVLLMSVN 153
Query: 188 PGFGGQKFMQDMMPKVKWLRENYPT--------LNIEVDGGVGPNTIDECAKC 232
PGFGGQ F+ ++ KV+ R + +E+DGGV + I E A+
Sbjct: 154 PGFGGQAFIPGVLDKVRQARARIDRQVAAGGRPVWLEIDGGVKADNITEIARA 206
>sp|P40117|RPEC_CUPNH Ribulose-phosphate 3-epimerase, chromosomal OS=Cupriavidus necator
(strain ATCC 17699 / H16 / DSM 428 / Stanier 337)
GN=cbbEC PE=3 SV=1
Length = 241
Score = 96.7 bits (239), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 72/241 (29%), Positives = 106/241 (43%), Gaps = 56/241 (23%)
Query: 2 SHVQCMIGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRN- 60
S + PSIL++D + L E + GAD +H DVMD +VPNLT G V + +R
Sbjct: 12 SQRAIRLAPSILSADFARLGEEVCAIEAGGADLVHFDVMDNHYVPNLTIGPLVCEAIRPL 71
Query: 61 -KIPKAFFETHMMVQNPQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVL 119
IP + H+MV EPVD +
Sbjct: 72 VSIP---IDVHLMV----------------------EPVDAL------------------ 88
Query: 120 QDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESAD 179
I A A + +FH E +V + I I++ G K GL + P TP+ + ++ D
Sbjct: 89 ---IPLFAKAGANIISFHPEASRHVDRTIGLIRDHGCKAGLVLNPATPLGWLDHTLDQLD 145
Query: 180 LVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPT--------LNIEVDGGVGPNTIDECAK 231
LVL+M+V PGFGGQ F+ ++ KV+ R + +E+DGGV + I A+
Sbjct: 146 LVLLMSVNPGFGGQAFIPGVLDKVRQARARIDRQVDAGGRPVWLEIDGGVKADNIAAIAR 205
Query: 232 C 232
Sbjct: 206 A 206
>sp|Q9ZJ75|RPE_HELPJ Ribulose-phosphate 3-epimerase OS=Helicobacter pylori (strain J99)
GN=rpe PE=3 SV=1
Length = 217
Score = 96.3 bits (238), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 72/229 (31%), Positives = 111/229 (48%), Gaps = 50/229 (21%)
Query: 8 IGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFF 67
+ PS+L++D +L E +++ S AD+LH+DVMDG +VPNLT G PV+ ++ +
Sbjct: 3 VAPSLLSADFMHLAKEIESV--SNADFLHVDVMDGHYVPNLTMG-PVILENVTQMSQVPL 59
Query: 68 ETHMMVQNPQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPMA 127
+ H+MV+N ++E A N + H E + +V++ IK +G I P
Sbjct: 60 DVHLMVENASFFVELFAPLNPQIISIHAENEKHPHRVLQLIKSSG----------ITP-- 107
Query: 128 DANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIMTVE 187
G+ + P T + I +ES LVL+M+V
Sbjct: 108 -------------------------------GIVLNPHTHEESIKYLLESVGLVLLMSVN 136
Query: 188 PGFGGQKFMQDMMP---KVKWLRENY-PTLNIEVDGGVGPNTIDECAKC 232
PGFGGQKF+ ++ KVK L + Y P+ +EVDGGV I E +
Sbjct: 137 PGFGGQKFLDLVLEKCLKVKELIKRYNPSCLLEVDGGVNDKNIFELQQA 185
>sp|Q8SRP6|RPE_ENCCU Ribulose-phosphate 3-epimerase OS=Encephalitozoon cuniculi (strain
GB-M1) GN=RPE1 PE=3 SV=1
Length = 217
Score = 94.0 bits (232), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 71/221 (32%), Positives = 104/221 (47%), Gaps = 54/221 (24%)
Query: 8 IGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKA-- 65
IG SIL+ + NL E L +G +HLDVMD TFV N+TFG C+ N+I +
Sbjct: 10 IGISILDCNFGNLEEELGELKRNGVTNIHLDVMDTTFVKNITFG----PCIINRILEHDF 65
Query: 66 FFETHMMVQNPQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEP 125
F+ HMMV++P I + V T H E D
Sbjct: 66 VFDVHMMVESPLDIIMQIDLERVSLVTIHSEVCDK------------------------- 100
Query: 126 MADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIMT 185
A V +Y +++ + G+A+ P+T VD + SAD VLIM+
Sbjct: 101 ---AGVAEY----------------LRKRNVLFGIALNPETQVD--DAEMRSADFVLIMS 139
Query: 186 VEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTI 226
V+PGFGGQKF ++ + KV+ +R Y + + +DGG+ + I
Sbjct: 140 VKPGFGGQKFQEECLAKVEEVRR-YGKM-VGIDGGIEMSNI 178
>sp|P56188|RPE_HELPY Ribulose-phosphate 3-epimerase OS=Helicobacter pylori (strain ATCC
700392 / 26695) GN=rpe PE=3 SV=1
Length = 217
Score = 92.0 bits (227), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 72/229 (31%), Positives = 108/229 (47%), Gaps = 50/229 (21%)
Query: 8 IGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFF 67
+ PS+L++D +L E +++ S AD+LH+DVMDG +VPNLT G PVV ++ +
Sbjct: 3 VAPSLLSADFMHLAKEIESV--SNADFLHVDVMDGHYVPNLTMG-PVVLENVTQMSQVPL 59
Query: 68 ETHMMVQNPQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPMA 127
+ H+MV+N + E A + H E + +V++ IK G I P
Sbjct: 60 DVHLMVENASFFAELFAPLKPQIISIHAENEKHPHRVLQLIKNLG----------ITP-- 107
Query: 128 DANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIMTVE 187
G+ + P T + I +ES LVL+M+V
Sbjct: 108 -------------------------------GIVLNPHTHEESIKYLLESVGLVLLMSVN 136
Query: 188 PGFGGQKFMQDMMP---KVKWLRENY-PTLNIEVDGGVGPNTIDECAKC 232
PGFGGQKF+ ++ KVK L + Y P+ +EVDGGV I E +
Sbjct: 137 PGFGGQKFLDLVLEKCLKVKELIKRYNPSCLLEVDGGVNDKNIFELQQA 185
>sp|P39362|SGCE_ECOLI Protein SgcE OS=Escherichia coli (strain K12) GN=sgcE PE=3 SV=1
Length = 210
Score = 79.7 bits (195), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 80/194 (41%), Gaps = 46/194 (23%)
Query: 28 LDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADAN 87
LD G+ LHLD+ D +F+ N+TFG V+ + + P H M+ PQ+W +A+
Sbjct: 25 LDFGS--LHLDIEDSSFINNITFGMKTVQAVARQTPHPL-SFHFMLARPQRWFNALAE-- 79
Query: 88 VDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPMADANVDQYTFHVEPVDNVPQV 147
+ P WI H E +D +
Sbjct: 80 -------IRPA-----------------------WI-----------FVHAETLDYPSET 98
Query: 148 IRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIMTVEPGFGGQKFMQDMMPKVKWLR 207
+ +I+ G + GL P TP+D D V++MT EP GQ+F+ M K++ +R
Sbjct: 99 LTEIRHTGARAGLVFNPATPIDAWRYLASELDGVMVMTSEPDGQGQRFIPSMCEKIQKVR 158
Query: 208 ENYPTLNIEVDGGV 221
+P DGG+
Sbjct: 159 TAFPQTECWADGGI 172
>sp|P47358|RPE_MYCGE Probable ribulose-phosphate 3-epimerase OS=Mycoplasma genitalium
(strain ATCC 33530 / G-37 / NCTC 10195) GN=rpe PE=3 SV=1
Length = 209
Score = 70.9 bits (172), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 61/106 (57%), Gaps = 4/106 (3%)
Query: 126 MADANVDQYTFHVEPVD--NVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLI 183
++ NV + +FHVEP + ++I+ +KE G +VGLA K T + + + + D + +
Sbjct: 78 LSQPNVKRISFHVEPFSFAKIKELIQLVKENGKEVGLAFKFTTNLQLYQPFFTTIDFITL 137
Query: 184 MTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDEC 229
M+V PG GGQ F + + +K N+ L IE+DGG+ N ID+
Sbjct: 138 MSVPPGKGGQAFNEAVFTNLKI--ANHYNLKIEIDGGIKVNNIDQI 181
>sp|P75522|RPE_MYCPN Probable ribulose-phosphate 3-epimerase OS=Mycoplasma pneumoniae
(strain ATCC 29342 / M129) GN=rpe PE=3 SV=1
Length = 215
Score = 70.5 bits (171), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/149 (32%), Positives = 76/149 (51%), Gaps = 9/149 (6%)
Query: 85 DANVDQYTFHVEPVDNVPQVIRQIKEAGM--KVGQVLQDWIEPMADANVDQYTFHVEPVD 142
D VD F E +D + Q+ Q+ M + Q+L ++ A V + +FHVEP D
Sbjct: 43 DHFVDNTVFQGEHLDELQQIGFQVNVHLMVQALEQILPVYLHHQA---VKRISFHVEPFD 99
Query: 143 --NVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIMTVEPGFGGQKFMQDMM 200
+ I QIK+AG +VGLA K TP+ ++ D V +M+V PG GGQ F +
Sbjct: 100 IPTIKHFIAQIKQAGKQVGLAFKFTTPLVNYERLVQQLDFVTLMSVPPGKGGQAFNSAVF 159
Query: 201 PKVKWLRENYPTLNIEVDGGVGPNTIDEC 229
+K + + + IE+DGG+ + I +
Sbjct: 160 NNLKQAHKYHCS--IEIDGGIKLDNIHQI 186
>sp|Q8Z2Y1|LSRE_SALTI Putative epimerase LsrE OS=Salmonella typhi GN=lsrE PE=3 SV=1
Length = 254
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/196 (25%), Positives = 78/196 (39%), Gaps = 39/196 (19%)
Query: 12 ILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFF-ETH 70
IL LH Q L LHLD+MDG F P T G V ++P+ F + H
Sbjct: 26 ILAGQWIALHRYLQQLEALNQPLLHLDLMDGQFCPQFTVGPWAV----GQLPQTFIKDVH 81
Query: 71 MMVQNPQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPMADAN 130
+MV + QW A + ++ E + + L W+
Sbjct: 82 LMVAD--QWAAAQACVKAGAHCITLQ------------AEGDIHLHHTL-SWL------- 119
Query: 131 VDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIMTVEPGF 190
Q T V +D VIR G+++ P TP+DVI + +++ ++ V PG+
Sbjct: 120 -GQQTVPV--IDGEMPVIR---------GISLCPATPLDVIIPILSDVEVIQLLAVNPGY 167
Query: 191 GGQKFMQDMMPKVKWL 206
G + D+ +V L
Sbjct: 168 GSKMRSSDLYERVAQL 183
>sp|Q5PJE1|LSRE_SALPA Putative epimerase LsrE OS=Salmonella paratyphi A (strain ATCC 9150
/ SARB42) GN=lsrE PE=3 SV=1
Length = 254
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/196 (26%), Positives = 77/196 (39%), Gaps = 39/196 (19%)
Query: 12 ILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFF-ETH 70
IL LH Q L LHLD+MDG F P T G V+ ++P+ F + H
Sbjct: 26 ILAGQWIALHRYLQQLEALNQPLLHLDLMDGQFCPQFTVGPWAVE----QLPQTFIKDVH 81
Query: 71 MMVQNPQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPMADAN 130
+MV DQ+T V I E + + L W+
Sbjct: 82 LMV--------------ADQWTAAQACVKAGAHCITLQAEGDIHLHHTL-SWL------- 119
Query: 131 VDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIMTVEPGF 190
Q T V + VIR G+++ P TP+DVI + +++ ++ V PG+
Sbjct: 120 -GQQTVPV--IGGEMPVIR---------GISLCPATPLDVIIPILSDVEVIQLLAVNPGY 167
Query: 191 GGQKFMQDMMPKVKWL 206
G + D+ +V L
Sbjct: 168 GSKMRSSDLHERVAQL 183
>sp|Q8ZKP8|LSRE_SALTY Putative epimerase LsrE OS=Salmonella typhimurium (strain LT2 /
SGSC1412 / ATCC 700720) GN=lsrE PE=2 SV=1
Length = 254
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/196 (26%), Positives = 76/196 (38%), Gaps = 39/196 (19%)
Query: 12 ILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFF-ETH 70
IL LH Q L LHLD+MDG F P T G V ++P+ F + H
Sbjct: 26 ILAGQWIALHRYLQQLEALNQPLLHLDLMDGQFCPQFTVGPWAV----GQLPQTFIKDVH 81
Query: 71 MMVQNPQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPMADAN 130
+MV DQ+T V I E + + L W+
Sbjct: 82 LMV--------------ADQWTAAQACVKAGAHCITLQAEGDIHLHHTL-SWL------- 119
Query: 131 VDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIMTVEPGF 190
Q T V + VIR G+++ P TP+DVI + +++ ++ V PG+
Sbjct: 120 -GQQTVPV--IGGEMPVIR---------GISLCPATPLDVIIPILSDVEVIQLLAVNPGY 167
Query: 191 GGQKFMQDMMPKVKWL 206
G + D+ +V L
Sbjct: 168 GSKMRSSDLHERVAQL 183
>sp|A9MZG7|LSRE_SALPB Putative epimerase LsrE OS=Salmonella paratyphi B (strain ATCC
BAA-1250 / SPB7) GN=lsrE PE=3 SV=1
Length = 254
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/196 (26%), Positives = 76/196 (38%), Gaps = 39/196 (19%)
Query: 12 ILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFF-ETH 70
IL LH Q L LHLD+MDG F P T G V ++P+ F + H
Sbjct: 26 ILAGQWIALHRYLQQLEALNQPLLHLDLMDGQFCPQFTVGPWAV----GQLPQTFIKDVH 81
Query: 71 MMVQNPQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPMADAN 130
+MV DQ+T V I E + + L W+
Sbjct: 82 LMV--------------ADQWTAAQACVKAGAHCITLQAEGDIHLHHTL-SWL------- 119
Query: 131 VDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIMTVEPGF 190
Q T V + VIR G+++ P TP+DVI + +++ ++ V PG+
Sbjct: 120 -GQQTVPV--IGGEMPVIR---------GISLCPATPLDVIIPILSDVEVIQLLAVNPGY 167
Query: 191 GGQKFMQDMMPKVKWL 206
G + D+ +V L
Sbjct: 168 GSKMRSSDLHERVAQL 183
>sp|Q57HD7|LSRE_SALCH Putative epimerase LsrE OS=Salmonella choleraesuis (strain SC-B67)
GN=lsrE PE=3 SV=1
Length = 254
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/196 (26%), Positives = 76/196 (38%), Gaps = 39/196 (19%)
Query: 12 ILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFF-ETH 70
IL LH Q L LHLD+MDG F P T G V ++P+ F + H
Sbjct: 26 ILAGQWIALHRYLQQLEALNQPLLHLDLMDGQFCPQFTVGPWAV----GQLPQTFIKDVH 81
Query: 71 MMVQNPQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPMADAN 130
+MV DQ+T V I E + + L W+
Sbjct: 82 LMV--------------ADQWTAAQACVKAGAHCITLQAEGDIHLHHTL-SWL------- 119
Query: 131 VDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIMTVEPGF 190
Q T V + VIR G+++ P TP+DVI + +++ ++ V PG+
Sbjct: 120 -GQQTVPV--IGGEMPVIR---------GISLCPATPLDVIIPILSDVEVIQLLAVNPGY 167
Query: 191 GGQKFMQDMMPKVKWL 206
G + D+ +V L
Sbjct: 168 GSKMRSSDLHERVAQL 183
>sp|Q5PZ43|XIRP1_DANRE Xin actin-binding repeat-containing protein 1 OS=Danio rerio
GN=xirp1 PE=1 SV=1
Length = 2297
Score = 39.3 bits (90), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 46/195 (23%), Positives = 79/195 (40%), Gaps = 28/195 (14%)
Query: 61 KIPKAFFETH---MMVQNPQ--QWIEPMADANVDQYT--FHVEPVDNVPQVIRQIKEAGM 113
K K FET M+ + + Q +EP+ A+V +T F +P+DN I+ + G+
Sbjct: 608 KTCKWLFETKPMDMLYEKSEGKQDVEPVPKADVKSHTWLFETQPLDN----IKDKENLGL 663
Query: 114 KVGQVLQDWIEPMADANVDQYTFHVEPVDNVP------QVIRQIKEAGMKVGLAIKPKTP 167
K+ +Q+ ++ + ++ F EP+D + Q +R + + M+ G
Sbjct: 664 KLCSTVQEDVKSDVNVKTVKHLFETEPLDRITDQADSGQNVRCVSQVDMQSG-------D 716
Query: 168 VDVIAEYIESADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTID 227
V + E ES L + + + K WL EN P +I I
Sbjct: 717 VSRVKEIFESKSLGTESSKWSEEQKNEIQSGSVHKFTWLFENQPIGDI----NEKEERIV 772
Query: 228 ECAKCLTGFGGQKFM 242
C GG+KF+
Sbjct: 773 SCDVEAGDVGGKKFI 787
>sp|O67786|MTNC_AQUAE Enolase-phosphatase E1 OS=Aquifex aeolicus (strain VF5) GN=mtnC
PE=3 SV=1
Length = 223
Score = 39.3 bits (90), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
Query: 47 NLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTFHVEPVDNVPQVIR 106
NL FGH V +RN + FF+T + + + E +A + + + + P+ ++
Sbjct: 132 NLFFGHSVYGDIRN-LFSGFFDTKIGSKRERSSYEKIAK-EIGLPPHEILFISDNPEELK 189
Query: 107 QIKEAGMKVGQVLQDWIEPMAD 128
KEAGMKV Q +++ +EP D
Sbjct: 190 AAKEAGMKVIQSVREGVEPSGD 211
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.137 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 114,211,224
Number of Sequences: 539616
Number of extensions: 5049973
Number of successful extensions: 13749
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 65
Number of HSP's that attempted gapping in prelim test: 13518
Number of HSP's gapped (non-prelim): 208
length of query: 277
length of database: 191,569,459
effective HSP length: 116
effective length of query: 161
effective length of database: 128,974,003
effective search space: 20764814483
effective search space used: 20764814483
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)