Query psy11600
Match_columns 277
No_of_seqs 180 out of 1690
Neff 6.9
Searched_HMMs 46136
Date Fri Aug 16 22:48:58 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11600.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11600hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0036 Rpe Pentose-5-phosphat 100.0 2.5E-60 5.4E-65 414.1 21.2 207 5-255 3-216 (220)
2 KOG3111|consensus 100.0 2.5E-59 5.5E-64 395.9 20.6 208 3-254 2-215 (224)
3 PRK08745 ribulose-phosphate 3- 100.0 2.7E-57 5.8E-62 401.3 21.6 208 5-255 3-218 (223)
4 PRK08005 epimerase; Validated 100.0 2.8E-57 6E-62 397.3 20.8 203 6-252 1-207 (210)
5 PRK09722 allulose-6-phosphate 100.0 5.5E-56 1.2E-60 393.7 20.1 207 5-255 2-218 (229)
6 PRK08091 ribulose-phosphate 3- 100.0 1.3E-55 2.7E-60 390.5 20.7 204 5-254 12-225 (228)
7 PRK14057 epimerase; Provisiona 100.0 3.1E-55 6.7E-60 392.3 19.8 205 5-255 19-240 (254)
8 PRK08883 ribulose-phosphate 3- 100.0 3.4E-55 7.3E-60 387.7 19.0 206 7-255 1-214 (220)
9 PF00834 Ribul_P_3_epim: Ribul 100.0 2.8E-55 6.1E-60 383.1 15.6 193 7-243 1-200 (201)
10 PTZ00170 D-ribulose-5-phosphat 100.0 5.3E-48 1.2E-52 343.7 18.6 209 3-254 4-219 (228)
11 PLN02334 ribulose-phosphate 3- 100.0 9.2E-37 2E-41 271.5 21.4 210 2-255 4-221 (229)
12 COG0036 Rpe Pentose-5-phosphat 100.0 5.1E-35 1.1E-39 255.3 14.6 164 65-276 4-187 (220)
13 KOG3111|consensus 100.0 3.1E-34 6.7E-39 243.3 12.8 156 74-277 17-188 (224)
14 PRK08005 epimerase; Validated 100.0 9.2E-33 2E-37 242.3 14.5 163 67-277 3-182 (210)
15 PRK08745 ribulose-phosphate 3- 100.0 1E-31 2.2E-36 238.0 15.1 165 65-277 4-190 (223)
16 PRK08091 ribulose-phosphate 3- 100.0 3.6E-31 7.8E-36 234.5 14.9 164 64-277 12-198 (228)
17 PF00834 Ribul_P_3_epim: Ribul 100.0 1.1E-31 2.3E-36 234.6 10.3 162 67-276 2-184 (201)
18 PRK09722 allulose-6-phosphate 100.0 4.8E-31 1E-35 234.3 14.5 163 65-276 3-187 (229)
19 PRK14057 epimerase; Provisiona 100.0 5.3E-31 1.1E-35 236.1 14.0 174 63-277 18-212 (254)
20 TIGR01163 rpe ribulose-phospha 100.0 2.8E-30 6E-35 225.2 18.0 201 8-252 1-209 (210)
21 PRK05581 ribulose-phosphate 3- 100.0 3.9E-29 8.4E-34 219.9 20.2 206 6-255 4-217 (220)
22 PRK08883 ribulose-phosphate 3- 100.0 4.9E-30 1.1E-34 227.1 12.7 161 69-277 4-186 (220)
23 cd00429 RPE Ribulose-5-phospha 100.0 7.3E-27 1.6E-31 203.4 18.5 202 7-252 1-210 (211)
24 PTZ00170 D-ribulose-5-phosphat 99.9 1.2E-24 2.5E-29 193.8 13.7 164 65-276 7-191 (228)
25 cd04724 Tryptophan_synthase_al 99.9 4.3E-22 9.2E-27 178.8 13.2 184 10-241 4-219 (242)
26 PRK13307 bifunctional formalde 99.9 9.6E-21 2.1E-25 179.9 15.5 202 12-264 176-390 (391)
27 PRK13306 ulaD 3-keto-L-gulonat 99.8 3.3E-20 7.2E-25 164.0 14.4 196 11-255 6-210 (216)
28 PRK13813 orotidine 5'-phosphat 99.8 4.1E-21 8.8E-26 169.0 8.6 194 12-255 7-211 (215)
29 TIGR03128 RuMP_HxlA 3-hexulose 99.8 2.3E-19 4.9E-24 156.6 16.3 193 12-254 3-204 (206)
30 PLN02334 ribulose-phosphate 3- 99.8 1E-18 2.2E-23 155.6 15.0 165 64-276 7-192 (229)
31 PRK13125 trpA tryptophan synth 99.8 5E-18 1.1E-22 152.6 18.8 185 7-242 5-219 (244)
32 cd04726 KGPDC_HPS 3-Keto-L-gul 99.7 3.8E-17 8.2E-22 141.8 13.9 188 12-250 4-200 (202)
33 TIGR00262 trpA tryptophan synt 99.7 8.6E-15 1.9E-19 132.6 19.2 191 6-242 10-232 (256)
34 PRK00230 orotidine 5'-phosphat 99.6 7.5E-14 1.6E-18 124.6 16.3 95 11-111 5-101 (230)
35 cd00564 TMP_TenI Thiamine mono 99.6 3.6E-14 7.8E-19 121.3 12.4 187 7-253 3-195 (196)
36 cd04724 Tryptophan_synthase_al 99.5 2.5E-13 5.4E-18 122.1 16.1 163 67-277 2-207 (242)
37 TIGR01163 rpe ribulose-phospha 99.5 2.3E-13 4.9E-18 118.5 14.0 160 69-276 3-183 (210)
38 PRK07028 bifunctional hexulose 99.5 4.6E-13 9.9E-18 129.6 15.6 190 12-254 7-208 (430)
39 PRK05581 ribulose-phosphate 3- 99.5 5.7E-13 1.2E-17 117.1 14.6 163 66-276 5-188 (220)
40 PRK00043 thiE thiamine-phospha 99.5 3.8E-13 8.2E-18 117.3 12.9 193 6-255 10-207 (212)
41 COG0269 SgbH 3-hexulose-6-phos 99.4 2E-12 4.3E-17 113.0 13.9 190 13-255 8-211 (217)
42 PRK13125 trpA tryptophan synth 99.4 3.5E-12 7.6E-17 114.7 15.8 163 66-276 5-204 (244)
43 cd00429 RPE Ribulose-5-phospha 99.4 2.1E-11 4.6E-16 106.0 14.8 161 68-276 3-184 (211)
44 PRK13813 orotidine 5'-phosphat 99.3 2.4E-11 5.3E-16 106.9 14.1 158 71-276 10-182 (215)
45 TIGR03128 RuMP_HxlA 3-hexulose 99.3 7.3E-11 1.6E-15 102.9 12.7 148 80-276 18-176 (206)
46 TIGR00262 trpA tryptophan synt 99.2 7.7E-10 1.7E-14 100.4 17.8 166 64-276 9-217 (256)
47 PRK13306 ulaD 3-keto-L-gulonat 99.2 9.3E-11 2E-15 103.8 11.2 132 99-276 41-181 (216)
48 CHL00200 trpA tryptophan synth 99.2 8.3E-10 1.8E-14 100.5 17.4 171 64-236 14-227 (263)
49 PRK13307 bifunctional formalde 99.2 4.2E-10 9.1E-15 107.4 13.8 153 70-276 178-348 (391)
50 cd04726 KGPDC_HPS 3-Keto-L-gul 99.0 5.7E-09 1.2E-13 90.4 14.1 147 79-276 18-176 (202)
51 TIGR01740 pyrF orotidine 5'-ph 98.9 1.8E-08 3.9E-13 88.9 11.9 89 12-110 2-96 (213)
52 cd04722 TIM_phosphate_binding 98.8 4.5E-07 9.9E-12 76.4 15.4 177 18-236 12-195 (200)
53 cd00564 TMP_TenI Thiamine mono 98.4 6.2E-06 1.3E-10 70.2 12.2 150 74-276 12-168 (196)
54 PRK00043 thiE thiamine-phospha 98.3 6.6E-06 1.4E-10 71.6 11.7 149 75-276 22-178 (212)
55 PRK07028 bifunctional hexulose 98.2 3.1E-05 6.8E-10 75.1 15.2 157 71-276 10-180 (430)
56 PRK13305 sgbH 3-keto-L-gulonat 98.2 1E-05 2.2E-10 71.9 10.7 188 10-254 5-209 (218)
57 cd00331 IGPS Indole-3-glycerol 98.0 0.00034 7.5E-09 61.5 15.3 187 54-250 13-215 (217)
58 PRK05718 keto-hydroxyglutarate 97.7 0.0012 2.7E-08 58.3 14.6 158 7-233 16-176 (212)
59 PRK00230 orotidine 5'-phosphat 97.7 0.00011 2.3E-09 65.7 7.6 171 69-255 7-226 (230)
60 cd00405 PRAI Phosphoribosylant 97.7 0.0015 3.3E-08 56.8 14.1 167 78-253 10-200 (203)
61 cd04732 HisA HisA. Phosphorib 97.6 0.0037 8.1E-08 55.2 16.0 183 36-236 5-215 (234)
62 PRK00278 trpC indole-3-glycero 97.5 0.0026 5.6E-08 57.9 13.2 171 75-253 71-257 (260)
63 PRK13111 trpA tryptophan synth 97.5 0.011 2.4E-07 53.8 17.1 178 56-236 4-224 (258)
64 cd00452 KDPG_aldolase KDPG and 97.4 0.007 1.5E-07 52.2 14.7 166 8-241 6-175 (190)
65 cd04723 HisA_HisF Phosphoribos 97.3 0.0077 1.7E-07 53.8 14.3 187 36-235 5-213 (233)
66 PLN02591 tryptophan synthase 97.3 0.017 3.8E-07 52.3 16.1 169 66-236 3-214 (250)
67 PRK09140 2-dehydro-3-deoxy-6-p 97.2 0.015 3.2E-07 51.2 14.7 150 76-242 24-184 (206)
68 PRK13585 1-(5-phosphoribosyl)- 97.2 0.011 2.3E-07 52.7 13.4 180 37-236 9-218 (241)
69 cd04725 OMP_decarboxylase_like 97.1 0.022 4.8E-07 50.3 14.9 90 12-111 2-97 (216)
70 PF00290 Trp_syntA: Tryptophan 97.1 0.045 9.8E-07 49.9 16.9 176 56-235 2-221 (259)
71 PRK07455 keto-hydroxyglutarate 97.0 0.045 9.8E-07 47.3 15.0 169 7-242 13-185 (187)
72 cd02810 DHOD_DHPD_FMN Dihydroo 97.0 0.016 3.5E-07 53.0 12.8 159 63-250 97-287 (289)
73 cd04740 DHOD_1B_like Dihydroor 96.9 0.036 7.9E-07 50.9 14.5 168 53-251 76-275 (296)
74 cd02801 DUS_like_FMN Dihydrour 96.9 0.012 2.6E-07 51.7 10.6 129 5-136 54-212 (231)
75 TIGR00737 nifR3_yhdG putative 96.8 0.014 3.1E-07 54.4 11.3 129 7-138 64-223 (319)
76 CHL00200 trpA tryptophan synth 96.8 0.018 4E-07 52.5 11.7 107 145-276 109-221 (263)
77 PRK13587 1-(5-phosphoribosyl)- 96.8 0.072 1.6E-06 47.7 15.3 182 36-235 7-216 (234)
78 PRK01222 N-(5'-phosphoribosyl) 96.8 0.033 7.2E-07 49.1 12.8 147 79-235 15-178 (210)
79 PRK14114 1-(5-phosphoribosyl)- 96.7 0.06 1.3E-06 48.5 14.4 166 37-222 7-198 (241)
80 PRK10550 tRNA-dihydrouridine s 96.7 0.026 5.7E-07 52.7 11.9 131 7-139 64-226 (312)
81 TIGR01740 pyrF orotidine 5'-ph 96.7 0.0071 1.5E-07 53.3 7.6 67 73-139 7-85 (213)
82 PF00977 His_biosynth: Histidi 96.6 0.013 2.9E-07 52.2 9.2 180 37-234 6-214 (229)
83 cd00331 IGPS Indole-3-glycerol 96.6 0.029 6.3E-07 49.2 11.2 114 17-138 30-149 (217)
84 TIGR01919 hisA-trpF 1-(5-phosp 96.6 0.11 2.4E-06 46.8 15.1 165 37-222 9-203 (243)
85 PRK07094 biotin synthase; Prov 96.5 0.057 1.2E-06 50.2 13.1 89 16-110 71-160 (323)
86 PRK06552 keto-hydroxyglutarate 96.5 0.22 4.7E-06 44.1 16.0 171 53-242 5-188 (213)
87 TIGR00007 phosphoribosylformim 96.5 0.15 3.2E-06 45.0 15.1 182 36-235 4-213 (230)
88 PRK14024 phosphoribosyl isomer 96.5 0.14 3E-06 46.0 14.9 174 36-230 9-206 (241)
89 COG0269 SgbH 3-hexulose-6-phos 96.5 0.023 4.9E-07 50.2 9.5 154 74-276 13-182 (217)
90 COG0135 TrpF Phosphoribosylant 96.5 0.076 1.6E-06 46.9 12.6 147 79-234 14-176 (208)
91 PRK10415 tRNA-dihydrouridine s 96.4 0.033 7.2E-07 52.2 11.1 128 7-139 66-226 (321)
92 cd04730 NPD_like 2-Nitropropan 96.4 0.11 2.4E-06 45.8 13.6 138 53-242 43-190 (236)
93 cd04731 HisF The cyclase subun 96.4 0.21 4.6E-06 44.5 15.6 180 35-235 5-218 (243)
94 PRK07259 dihydroorotate dehydr 96.4 0.033 7.2E-07 51.4 10.6 129 6-136 92-262 (301)
95 cd02810 DHOD_DHPD_FMN Dihydroo 96.4 0.071 1.5E-06 48.7 12.7 84 6-94 99-196 (289)
96 cd04740 DHOD_1B_like Dihydroor 96.4 0.054 1.2E-06 49.8 11.9 129 6-136 90-259 (296)
97 cd04729 NanE N-acetylmannosami 96.4 0.074 1.6E-06 46.8 12.2 167 64-242 10-211 (219)
98 PRK01130 N-acetylmannosamine-6 96.4 0.096 2.1E-06 46.1 12.9 161 76-254 25-217 (221)
99 cd04722 TIM_phosphate_binding 96.3 0.069 1.5E-06 44.5 11.5 156 75-276 13-189 (200)
100 PRK13586 1-(5-phosphoribosyl)- 96.3 0.19 4.2E-06 45.0 14.6 176 37-232 8-210 (232)
101 PRK07565 dihydroorotate dehydr 96.3 0.094 2E-06 49.3 13.2 163 54-250 92-283 (334)
102 PRK07259 dihydroorotate dehydr 96.3 0.077 1.7E-06 49.0 12.3 169 53-251 78-278 (301)
103 PRK07695 transcriptional regul 96.2 0.2 4.4E-06 43.4 14.2 182 8-255 7-196 (201)
104 PRK02083 imidazole glycerol ph 96.2 0.2 4.3E-06 45.1 14.5 193 36-249 9-240 (253)
105 PLN02446 (5-phosphoribosyl)-5- 96.2 0.17 3.7E-06 46.2 13.6 155 74-235 43-231 (262)
106 TIGR00343 pyridoxal 5'-phospha 96.1 0.25 5.4E-06 45.5 14.6 204 16-254 16-246 (287)
107 cd02940 DHPD_FMN Dihydropyrimi 96.1 0.24 5.1E-06 45.9 14.9 172 55-250 90-296 (299)
108 COG0106 HisA Phosphoribosylfor 96.1 0.39 8.4E-06 43.3 15.4 93 70-164 27-131 (241)
109 cd04739 DHOD_like Dihydroorota 96.1 0.23 4.9E-06 46.6 14.7 155 63-250 98-281 (325)
110 PRK04180 pyridoxal biosynthesi 96.0 0.17 3.6E-06 46.8 13.1 205 22-254 28-252 (293)
111 PF01081 Aldolase: KDPG and KH 96.0 0.19 4E-06 44.0 12.9 153 74-244 20-183 (196)
112 PRK00748 1-(5-phosphoribosyl)- 96.0 0.32 6.9E-06 42.9 14.4 160 70-233 26-212 (233)
113 COG0159 TrpA Tryptophan syntha 95.9 1 2.2E-05 41.3 17.1 178 55-235 8-228 (265)
114 TIGR00693 thiE thiamine-phosph 95.9 0.19 4.1E-06 43.1 12.1 51 200-250 140-194 (196)
115 TIGR01182 eda Entner-Doudoroff 95.9 0.26 5.6E-06 43.4 13.0 154 71-243 14-182 (204)
116 TIGR00735 hisF imidazoleglycer 95.7 0.52 1.1E-05 42.5 15.0 180 35-235 8-224 (254)
117 TIGR03572 WbuZ glycosyl amidat 95.7 0.67 1.5E-05 41.0 15.4 165 37-222 10-207 (232)
118 PF02581 TMP-TENI: Thiamine mo 95.7 0.14 3E-06 43.7 10.6 79 8-99 4-82 (180)
119 PRK06256 biotin synthase; Vali 95.7 0.31 6.8E-06 45.5 13.7 175 15-222 91-280 (336)
120 cd04738 DHOD_2_like Dihydrooro 95.7 0.24 5.2E-06 46.5 12.9 166 53-250 116-324 (327)
121 TIGR01334 modD putative molybd 95.7 0.16 3.4E-06 46.9 11.2 135 52-241 110-266 (277)
122 COG0352 ThiE Thiamine monophos 95.6 0.44 9.4E-06 42.2 13.6 171 77-255 24-205 (211)
123 PRK02615 thiamine-phosphate py 95.6 0.068 1.5E-06 50.7 8.9 233 11-255 86-341 (347)
124 PF00215 OMPdecase: Orotidine 95.6 0.024 5.1E-07 50.3 5.4 90 12-111 4-106 (226)
125 PRK00278 trpC indole-3-glycero 95.4 1.7 3.8E-05 39.4 17.2 115 18-139 70-189 (260)
126 PRK07565 dihydroorotate dehydr 95.4 0.33 7.1E-06 45.6 12.8 90 6-96 102-199 (334)
127 PRK06512 thiamine-phosphate py 95.4 0.36 7.9E-06 42.9 12.4 54 201-255 154-211 (221)
128 TIGR01037 pyrD_sub1_fam dihydr 95.4 0.18 4E-06 46.4 10.8 83 7-94 92-189 (300)
129 PRK09121 5-methyltetrahydropte 95.3 0.33 7.1E-06 45.9 12.6 20 19-38 157-176 (339)
130 PF01729 QRPTase_C: Quinolinat 95.3 0.2 4.4E-06 42.7 10.0 32 205-236 120-151 (169)
131 PRK09140 2-dehydro-3-deoxy-6-p 95.2 0.38 8.2E-06 42.3 11.8 100 21-136 73-178 (206)
132 TIGR01037 pyrD_sub1_fam dihydr 95.2 2.5 5.4E-05 38.9 17.8 211 6-251 14-278 (300)
133 PF03437 BtpA: BtpA family; I 95.1 2.1 4.5E-05 39.0 16.6 69 21-92 32-108 (254)
134 PRK06806 fructose-bisphosphate 95.1 0.35 7.7E-06 44.6 11.7 128 10-139 76-232 (281)
135 PF00697 PRAI: N-(5'phosphorib 95.1 0.39 8.5E-06 41.7 11.4 150 78-235 10-171 (197)
136 PRK09240 thiH thiamine biosynt 95.0 0.66 1.4E-05 44.3 13.8 80 15-99 104-185 (371)
137 PRK05718 keto-hydroxyglutarate 95.0 0.73 1.6E-05 40.8 12.9 95 53-153 7-106 (212)
138 PRK11815 tRNA-dihydrouridine s 94.9 0.23 5E-06 46.8 10.2 126 7-137 66-233 (333)
139 PRK13585 1-(5-phosphoribosyl)- 94.9 0.55 1.2E-05 41.7 12.1 107 22-136 89-221 (241)
140 PRK05458 guanosine 5'-monophos 94.8 0.36 7.9E-06 45.5 11.1 109 21-136 99-229 (326)
141 cd04739 DHOD_like Dihydroorota 94.8 0.82 1.8E-05 42.9 13.4 129 6-137 100-266 (325)
142 PRK07896 nicotinate-nucleotide 94.7 0.18 3.9E-06 46.7 8.7 28 209-236 243-270 (289)
143 PRK08508 biotin synthase; Prov 94.6 2.9 6.3E-05 38.3 16.4 79 16-97 41-122 (279)
144 TIGR03700 mena_SCO4494 putativ 94.6 1.1 2.3E-05 42.5 13.9 73 15-92 79-165 (351)
145 COG0800 Eda 2-keto-3-deoxy-6-p 94.6 0.65 1.4E-05 41.1 11.4 181 53-253 5-202 (211)
146 cd02801 DUS_like_FMN Dihydrour 94.6 0.61 1.3E-05 40.8 11.5 77 63-139 53-160 (231)
147 TIGR03471 HpnJ hopanoid biosyn 94.6 0.19 4.2E-06 49.3 9.1 109 16-132 228-338 (472)
148 TIGR01859 fruc_bis_ald_ fructo 94.5 0.49 1.1E-05 43.6 11.1 128 10-139 76-232 (282)
149 PLN02495 oxidoreductase, actin 94.5 0.94 2E-05 43.7 13.2 84 54-137 103-214 (385)
150 PRK03512 thiamine-phosphate py 94.4 1 2.2E-05 39.7 12.5 173 74-254 19-204 (211)
151 PRK06801 hypothetical protein; 94.4 0.44 9.5E-06 44.1 10.5 139 10-153 76-246 (286)
152 cd00452 KDPG_aldolase KDPG and 94.4 0.65 1.4E-05 39.9 11.0 102 21-138 66-172 (190)
153 cd01568 QPRTase_NadC Quinolina 94.3 0.078 1.7E-06 48.5 5.4 84 143-236 166-251 (269)
154 cd04727 pdxS PdxS is a subunit 94.3 1 2.2E-05 41.5 12.5 205 16-254 14-243 (283)
155 TIGR02026 BchE magnesium-proto 94.3 0.2 4.3E-06 49.7 8.6 111 15-131 222-337 (497)
156 TIGR00433 bioB biotin syntheta 94.2 0.88 1.9E-05 41.5 12.1 173 19-221 66-250 (296)
157 cd07938 DRE_TIM_HMGL 3-hydroxy 94.2 1.7 3.7E-05 39.8 13.9 69 22-99 24-98 (274)
158 COG0157 NadC Nicotinate-nucleo 94.1 0.056 1.2E-06 49.6 3.9 73 202-277 177-253 (280)
159 PF01729 QRPTase_C: Quinolinat 94.1 0.077 1.7E-06 45.3 4.5 74 202-276 69-145 (169)
160 PRK13958 N-(5'-phosphoribosyl) 94.0 2.1 4.6E-05 37.6 13.6 147 78-234 12-176 (207)
161 cd04732 HisA HisA. Phosphorib 94.0 1.3 2.9E-05 38.9 12.4 115 19-137 30-166 (234)
162 PRK01033 imidazole glycerol ph 94.0 2.8 6.1E-05 37.9 14.7 179 35-236 8-222 (258)
163 cd03174 DRE_TIM_metallolyase D 93.9 4.3 9.4E-05 36.1 16.5 72 21-99 22-99 (265)
164 cd02803 OYE_like_FMN_family Ol 93.9 0.63 1.4E-05 43.2 10.6 117 20-136 143-310 (327)
165 PRK12331 oxaloacetate decarbox 93.8 3.3 7.2E-05 40.7 15.9 115 21-137 29-174 (448)
166 TIGR02129 hisA_euk phosphoribo 93.7 2.4 5.2E-05 38.6 13.7 63 73-138 36-105 (253)
167 PRK08445 hypothetical protein; 93.7 1.6 3.6E-05 41.3 13.1 82 16-99 74-167 (348)
168 cd02809 alpha_hydroxyacid_oxid 93.7 2 4.4E-05 39.6 13.5 82 55-137 107-200 (299)
169 cd03312 CIMS_N_terminal_like C 93.7 1.4 2.9E-05 42.1 12.6 76 20-99 184-264 (360)
170 PRK06015 keto-hydroxyglutarate 93.6 1.5 3.2E-05 38.5 11.8 139 79-236 21-168 (201)
171 COG0284 PyrF Orotidine-5'-phos 93.6 0.54 1.2E-05 42.4 9.3 63 76-139 26-98 (240)
172 PTZ00314 inosine-5'-monophosph 93.6 0.67 1.4E-05 46.1 10.8 65 21-93 243-309 (495)
173 TIGR00742 yjbN tRNA dihydrouri 93.6 1.1 2.3E-05 42.1 11.6 127 7-138 56-224 (318)
174 TIGR00007 phosphoribosylformim 93.6 1.7 3.6E-05 38.2 12.3 114 19-138 29-166 (230)
175 PRK09427 bifunctional indole-3 93.5 2.2 4.8E-05 42.1 13.9 144 79-235 269-424 (454)
176 cd07937 DRE_TIM_PC_TC_5S Pyruv 93.4 3.8 8.2E-05 37.4 14.7 70 22-93 25-110 (275)
177 cd02940 DHPD_FMN Dihydropyrimi 93.3 0.92 2E-05 41.9 10.6 83 6-93 100-199 (299)
178 PF03932 CutC: CutC family; I 93.3 2.8 6.1E-05 36.8 12.9 163 23-234 12-193 (201)
179 PRK07114 keto-hydroxyglutarate 93.3 4.1 9E-05 36.3 14.2 171 52-242 6-193 (222)
180 PRK06096 molybdenum transport 93.2 0.47 1E-05 43.9 8.3 26 211-236 235-260 (284)
181 PRK05286 dihydroorotate dehydr 93.1 1.5 3.2E-05 41.5 11.8 210 10-251 61-334 (344)
182 PRK05848 nicotinate-nucleotide 93.0 0.54 1.2E-05 43.2 8.5 26 211-236 228-253 (273)
183 PRK08318 dihydropyrimidine deh 93.0 3.3 7.1E-05 40.1 14.4 173 54-250 89-297 (420)
184 cd02809 alpha_hydroxyacid_oxid 93.0 1.2 2.6E-05 41.2 10.8 113 16-136 127-255 (299)
185 cd01568 QPRTase_NadC Quinolina 92.9 0.2 4.2E-06 45.9 5.5 70 202-276 170-245 (269)
186 TIGR03551 F420_cofH 7,8-dideme 92.9 3.2 6.9E-05 39.1 13.8 74 15-91 70-155 (343)
187 COG1954 GlpP Glycerol-3-phosph 92.9 0.95 2.1E-05 38.8 9.0 117 11-135 28-171 (181)
188 cd04730 NPD_like 2-Nitropropan 92.9 2.9 6.3E-05 36.7 12.8 106 18-137 67-185 (236)
189 cd04741 DHOD_1A_like Dihydroor 92.8 2 4.3E-05 39.7 11.9 160 63-251 90-288 (294)
190 TIGR02351 thiH thiazole biosyn 92.7 3 6.5E-05 39.8 13.4 177 15-222 103-300 (366)
191 cd03311 CIMS_C_terminal_like C 92.7 3 6.6E-05 38.8 13.2 77 19-95 156-249 (332)
192 cd07943 DRE_TIM_HOA 4-hydroxy- 92.7 7.5 0.00016 35.1 17.3 115 19-136 23-160 (263)
193 PF04309 G3P_antiterm: Glycero 92.6 0.12 2.5E-06 44.5 3.3 115 12-135 25-167 (175)
194 PLN02898 HMP-P kinase/thiamin- 92.6 1.5 3.3E-05 43.4 11.6 170 77-255 310-494 (502)
195 PRK12290 thiE thiamine-phospha 92.6 1.8 3.9E-05 42.4 11.6 176 73-255 216-411 (437)
196 PRK09517 multifunctional thiam 92.5 1.6 3.4E-05 45.8 12.1 53 201-253 153-211 (755)
197 PRK07455 keto-hydroxyglutarate 92.5 2.5 5.5E-05 36.4 11.6 100 22-136 75-179 (187)
198 PRK05692 hydroxymethylglutaryl 92.5 5.9 0.00013 36.5 14.7 67 21-95 29-100 (287)
199 PF01207 Dus: Dihydrouridine s 92.5 0.54 1.2E-05 43.8 7.9 128 7-137 55-213 (309)
200 PRK05222 5-methyltetrahydropte 92.4 2.1 4.6E-05 44.8 12.8 76 19-98 582-669 (758)
201 TIGR01371 met_syn_B12ind 5-met 92.4 6.7 0.00015 41.1 16.5 77 19-99 576-664 (750)
202 TIGR01919 hisA-trpF 1-(5-phosp 92.4 8.1 0.00017 34.8 15.0 88 19-111 32-119 (243)
203 PF00218 IGPS: Indole-3-glycer 92.3 1.1 2.3E-05 40.8 9.3 169 74-252 68-254 (254)
204 TIGR03572 WbuZ glycosyl amidat 92.2 4.5 9.7E-05 35.6 13.1 119 10-136 76-226 (232)
205 PRK13957 indole-3-glycerol-pho 92.1 4.1 8.8E-05 37.0 12.7 166 75-251 62-245 (247)
206 cd02911 arch_FMN Archeal FMN-b 92.1 2 4.4E-05 38.4 10.7 120 6-137 73-220 (233)
207 cd07944 DRE_TIM_HOA_like 4-hyd 92.0 7.5 0.00016 35.4 14.6 89 40-152 7-116 (266)
208 TIGR00423 radical SAM domain p 92.0 5.6 0.00012 36.8 14.0 72 15-91 36-121 (309)
209 PRK08385 nicotinate-nucleotide 91.9 0.99 2.1E-05 41.6 8.7 26 211-236 230-255 (278)
210 TIGR00736 nifR3_rel_arch TIM-b 91.9 2.2 4.7E-05 38.3 10.7 120 7-136 69-219 (231)
211 PRK14041 oxaloacetate decarbox 91.8 5.6 0.00012 39.4 14.4 72 20-93 27-114 (467)
212 PRK07428 nicotinate-nucleotide 91.7 0.24 5.3E-06 45.8 4.5 74 199-276 182-261 (288)
213 PRK01130 N-acetylmannosamine-6 91.7 5.1 0.00011 35.0 12.8 111 21-136 78-201 (221)
214 PLN02475 5-methyltetrahydropte 91.6 3.2 6.8E-05 43.6 13.0 84 20-108 188-278 (766)
215 PRK11572 copper homeostasis pr 91.6 9.2 0.0002 34.7 14.4 40 237-276 149-188 (248)
216 TIGR01306 GMP_reduct_2 guanosi 91.6 2.2 4.8E-05 40.1 10.9 108 22-136 97-226 (321)
217 cd02932 OYE_YqiM_FMN Old yello 91.5 1.1 2.4E-05 42.1 8.7 116 21-136 157-319 (336)
218 PLN02617 imidazole glycerol ph 91.5 5 0.00011 40.4 13.8 69 70-139 263-356 (538)
219 TIGR00736 nifR3_rel_arch TIM-b 91.5 1 2.3E-05 40.3 8.1 83 3-92 136-218 (231)
220 PRK00748 1-(5-phosphoribosyl)- 91.4 4.7 0.0001 35.4 12.3 116 19-138 31-167 (233)
221 PRK06552 keto-hydroxyglutarate 91.4 2.9 6.2E-05 37.0 10.8 100 22-137 79-183 (213)
222 PRK15108 biotin synthase; Prov 91.4 4.4 9.5E-05 38.4 12.7 78 16-97 77-156 (345)
223 cd00381 IMPDH IMPDH: The catal 91.3 3 6.6E-05 39.1 11.5 110 20-136 95-225 (325)
224 cd04733 OYE_like_2_FMN Old yel 91.3 1.6 3.6E-05 40.9 9.7 116 19-136 150-321 (338)
225 PRK06843 inosine 5-monophospha 91.2 2.1 4.6E-05 41.5 10.5 109 21-136 155-284 (404)
226 TIGR00259 thylakoid_BtpA membr 91.2 12 0.00025 34.2 18.0 70 21-93 31-108 (257)
227 PRK13803 bifunctional phosphor 91.2 6.2 0.00013 40.3 14.4 148 78-234 14-182 (610)
228 PRK05265 pyridoxine 5'-phospha 91.2 7.7 0.00017 35.0 13.2 167 75-276 25-202 (239)
229 TIGR01036 pyrD_sub2 dihydrooro 91.1 3 6.5E-05 39.4 11.3 209 10-250 58-332 (335)
230 TIGR01303 IMP_DH_rel_1 IMP deh 91.0 2.5 5.4E-05 41.9 11.1 68 19-92 225-292 (475)
231 TIGR01302 IMP_dehydrog inosine 91.0 0.66 1.4E-05 45.5 7.0 65 22-92 227-291 (450)
232 TIGR01334 modD putative molybd 91.0 0.46 1E-05 43.8 5.5 78 199-277 175-254 (277)
233 cd00958 DhnA Class I fructose- 91.0 4.5 9.8E-05 35.6 11.8 167 74-254 21-232 (235)
234 cd00019 AP2Ec AP endonuclease 90.9 8.1 0.00018 34.8 13.7 82 15-97 8-108 (279)
235 PLN02475 5-methyltetrahydropte 90.9 6.7 0.00014 41.3 14.5 77 19-97 587-673 (766)
236 PRK07428 nicotinate-nucleotide 90.8 1.6 3.5E-05 40.4 8.9 27 210-236 241-267 (288)
237 PLN02746 hydroxymethylglutaryl 90.8 13 0.00027 35.5 15.1 65 22-94 72-141 (347)
238 cd04729 NanE N-acetylmannosami 90.6 6.7 0.00015 34.3 12.5 111 21-136 82-205 (219)
239 PRK04326 methionine synthase; 90.6 6.4 0.00014 36.6 12.9 70 19-94 162-237 (330)
240 TIGR01371 met_syn_B12ind 5-met 90.5 2.6 5.5E-05 44.2 11.1 76 20-99 180-260 (750)
241 PRK08385 nicotinate-nucleotide 90.4 0.45 9.9E-06 43.8 5.0 76 199-277 169-250 (278)
242 COG0042 tRNA-dihydrouridine sy 90.4 4.4 9.5E-05 38.1 11.7 130 8-139 69-230 (323)
243 PF03932 CutC: CutC family; I 90.4 11 0.00023 33.2 13.3 40 237-276 148-188 (201)
244 TIGR02151 IPP_isom_2 isopenten 90.3 4.8 0.0001 37.9 11.9 83 56-138 105-211 (333)
245 PRK14024 phosphoribosyl isomer 90.3 9.4 0.0002 34.1 13.3 115 19-138 33-167 (241)
246 COG3142 CutC Uncharacterized p 90.3 6.6 0.00014 35.3 11.8 40 237-276 149-189 (241)
247 PF04481 DUF561: Protein of un 90.2 3.2 7E-05 37.0 9.8 113 7-134 16-149 (242)
248 cd07945 DRE_TIM_CMS Leptospira 90.1 1.9 4E-05 39.7 8.7 74 14-91 143-220 (280)
249 PF00478 IMPDH: IMP dehydrogen 90.1 1.3 2.7E-05 42.3 7.7 83 6-100 97-181 (352)
250 TIGR01496 DHPS dihydropteroate 90.0 14 0.0003 33.6 14.2 98 16-139 21-127 (257)
251 cd01572 QPRTase Quinolinate ph 89.9 1.5 3.2E-05 40.2 7.8 79 52-137 169-254 (268)
252 PRK06520 5-methyltetrahydropte 89.7 7 0.00015 37.4 12.6 23 19-41 171-193 (368)
253 cd00003 PNPsynthase Pyridoxine 89.6 12 0.00026 33.7 13.1 103 75-189 22-133 (234)
254 COG1856 Uncharacterized homolo 89.6 4 8.6E-05 36.7 9.9 94 12-111 36-131 (275)
255 PRK05222 5-methyltetrahydropte 89.6 5.9 0.00013 41.6 12.9 76 20-99 186-266 (758)
256 cd00959 DeoC 2-deoxyribose-5-p 89.6 7.4 0.00016 33.8 11.8 146 119-268 19-184 (203)
257 PRK07896 nicotinate-nucleotide 89.6 1 2.2E-05 41.8 6.5 75 199-277 186-265 (289)
258 cd00945 Aldolase_Class_I Class 89.5 11 0.00025 31.4 12.8 66 16-94 11-85 (201)
259 TIGR01108 oadA oxaloacetate de 89.4 20 0.00044 36.5 16.2 72 19-94 22-111 (582)
260 PRK08185 hypothetical protein; 89.4 5.7 0.00012 36.7 11.3 128 10-139 70-230 (283)
261 TIGR03699 mena_SCO4550 menaqui 89.4 7.1 0.00015 36.5 12.3 72 15-91 72-157 (340)
262 PRK13802 bifunctional indole-3 89.4 5 0.00011 41.7 11.9 193 53-254 51-258 (695)
263 PRK10128 2-keto-3-deoxy-L-rham 89.3 17 0.00037 33.2 15.4 181 53-253 8-203 (267)
264 PRK00957 methionine synthase; 89.3 8.5 0.00018 35.5 12.5 68 20-91 146-216 (305)
265 PRK06096 molybdenum transport 89.3 0.81 1.8E-05 42.3 5.6 75 199-277 176-255 (284)
266 TIGR03151 enACPred_II putative 89.2 2 4.4E-05 40.0 8.4 82 53-138 52-137 (307)
267 cd01573 modD_like ModD; Quinol 89.2 2.1 4.6E-05 39.2 8.3 26 211-236 229-254 (272)
268 PRK05848 nicotinate-nucleotide 89.1 0.86 1.9E-05 41.9 5.7 76 198-277 167-248 (273)
269 cd04735 OYE_like_4_FMN Old yel 89.1 1.8 3.9E-05 41.0 8.1 114 20-136 146-312 (353)
270 PRK07709 fructose-bisphosphate 89.0 5.8 0.00013 36.7 11.1 128 10-139 79-235 (285)
271 TIGR03151 enACPred_II putative 89.0 7.1 0.00015 36.4 11.8 147 78-236 26-186 (307)
272 PRK12737 gatY tagatose-bisphos 89.0 5.4 0.00012 36.9 10.9 128 10-139 76-234 (284)
273 PF03740 PdxJ: Pyridoxal phosp 89.0 3.9 8.5E-05 36.9 9.6 172 73-276 21-203 (239)
274 PRK05742 nicotinate-nucleotide 88.9 2.1 4.6E-05 39.4 8.1 79 52-137 177-261 (277)
275 PRK01033 imidazole glycerol ph 88.9 8.3 0.00018 34.8 12.0 116 12-135 78-224 (258)
276 TIGR00735 hisF imidazoleglycer 88.9 6.5 0.00014 35.3 11.2 117 12-136 78-228 (254)
277 TIGR01859 fruc_bis_ald_ fructo 88.9 16 0.00035 33.6 14.0 193 14-236 23-226 (282)
278 PLN02428 lipoic acid synthase 88.9 4.5 9.7E-05 38.5 10.5 86 15-109 130-224 (349)
279 PRK12330 oxaloacetate decarbox 88.9 27 0.00059 34.9 16.7 69 22-92 31-115 (499)
280 TIGR01858 tag_bisphos_ald clas 88.8 5.4 0.00012 36.8 10.8 128 10-139 74-232 (282)
281 PRK08999 hypothetical protein; 88.8 6.5 0.00014 36.2 11.4 35 201-236 270-304 (312)
282 PRK07094 biotin synthase; Prov 88.7 20 0.00043 33.1 15.0 163 78-266 77-257 (323)
283 PLN02389 biotin synthase 88.7 12 0.00026 36.0 13.4 78 15-97 116-198 (379)
284 PRK13111 trpA tryptophan synth 88.6 9.1 0.0002 34.8 12.0 108 145-276 107-219 (258)
285 cd08562 GDPD_EcUgpQ_like Glyce 88.5 3 6.6E-05 36.3 8.7 85 48-135 138-225 (229)
286 PRK06233 hypothetical protein; 88.5 14 0.0003 35.4 13.7 22 20-41 173-194 (372)
287 PRK12738 kbaY tagatose-bisphos 88.4 7 0.00015 36.2 11.2 128 10-139 76-234 (286)
288 PRK09282 pyruvate carboxylase 88.4 20 0.00044 36.6 15.4 72 19-92 27-114 (592)
289 cd07940 DRE_TIM_IPMS 2-isoprop 88.2 17 0.00036 32.9 13.5 74 17-97 19-96 (268)
290 PRK08318 dihydropyrimidine deh 88.1 4.9 0.00011 38.9 10.5 81 7-92 101-198 (420)
291 TIGR00676 fadh2 5,10-methylene 88.0 13 0.00028 33.9 12.7 163 8-176 5-206 (272)
292 TIGR00343 pyridoxal 5'-phospha 88.0 8.9 0.00019 35.5 11.4 69 21-100 79-147 (287)
293 PRK02412 aroD 3-dehydroquinate 87.9 5.8 0.00013 35.8 10.2 129 6-138 16-173 (253)
294 COG0134 TrpC Indole-3-glycerol 87.8 6.6 0.00014 35.8 10.4 191 52-252 46-252 (254)
295 PRK07535 methyltetrahydrofolat 87.8 20 0.00044 32.6 13.7 150 78-263 29-194 (261)
296 PRK07315 fructose-bisphosphate 87.8 6.1 0.00013 36.7 10.4 126 10-139 79-234 (293)
297 cd04731 HisF The cyclase subun 87.7 12 0.00025 33.3 12.0 119 10-136 73-222 (243)
298 PLN02274 inosine-5'-monophosph 87.6 4.2 9.1E-05 40.6 9.8 109 21-136 250-379 (505)
299 PRK09016 quinolinate phosphori 87.4 4 8.8E-05 38.0 9.0 79 52-137 196-280 (296)
300 PRK07807 inosine 5-monophospha 87.4 4.8 0.0001 40.0 10.1 109 19-136 227-358 (479)
301 PF04476 DUF556: Protein of un 87.2 22 0.00048 32.0 15.1 182 22-254 11-232 (235)
302 PRK04180 pyridoxal biosynthesi 87.2 9.6 0.00021 35.4 11.1 69 21-100 86-154 (293)
303 PRK12928 lipoyl synthase; Prov 87.0 2.6 5.5E-05 39.1 7.5 92 14-110 86-183 (290)
304 KOG2263|consensus 86.8 7.4 0.00016 38.7 10.6 128 19-217 587-730 (765)
305 PRK07695 transcriptional regul 86.7 11 0.00023 32.6 10.8 79 55-136 86-176 (201)
306 COG2108 Uncharacterized conser 86.7 3.3 7.1E-05 39.0 7.9 31 66-96 110-143 (353)
307 TIGR00559 pdxJ pyridoxine 5'-p 86.6 20 0.00043 32.3 12.5 103 75-189 22-133 (237)
308 KOG2550|consensus 86.6 3 6.5E-05 40.5 7.7 79 5-91 239-317 (503)
309 cd07944 DRE_TIM_HOA_like 4-hyd 86.3 7.8 0.00017 35.3 10.2 120 15-136 17-157 (266)
310 PRK11572 copper homeostasis pr 86.2 26 0.00056 31.8 15.7 167 19-235 10-193 (248)
311 TIGR01302 IMP_dehydrog inosine 86.0 19 0.00042 35.3 13.4 12 258-269 327-338 (450)
312 PF00809 Pterin_bind: Pterin b 86.0 21 0.00045 31.2 12.4 93 23-139 24-125 (210)
313 PRK01207 methionine synthase; 85.8 26 0.00056 33.4 13.6 72 19-98 153-238 (343)
314 PRK09195 gatY tagatose-bisphos 85.8 9.7 0.00021 35.2 10.5 128 10-139 76-234 (284)
315 PLN02363 phosphoribosylanthran 85.6 28 0.00061 31.7 14.0 148 78-234 58-222 (256)
316 TIGR00734 hisAF_rel hisA/hisF 85.5 9.4 0.0002 33.8 10.0 96 37-143 7-114 (221)
317 TIGR00284 dihydropteroate synt 85.5 42 0.00092 33.6 16.1 108 6-139 152-260 (499)
318 TIGR03217 4OH_2_O_val_ald 4-hy 85.4 14 0.00031 34.8 11.7 118 16-136 22-162 (333)
319 cd04824 eu_ALAD_PBGS_cysteine_ 85.4 33 0.00071 32.2 14.8 172 10-216 43-267 (320)
320 PRK06559 nicotinate-nucleotide 85.4 6 0.00013 36.7 9.0 103 28-137 155-269 (290)
321 cd00739 DHPS DHPS subgroup of 85.3 25 0.00055 31.8 13.0 76 76-154 26-119 (257)
322 cd00958 DhnA Class I fructose- 85.3 9.2 0.0002 33.7 9.9 117 14-137 72-214 (235)
323 PRK11613 folP dihydropteroate 85.2 23 0.0005 32.7 12.7 72 63-134 25-114 (282)
324 PRK05096 guanosine 5'-monophos 85.1 2.9 6.2E-05 39.7 6.8 65 22-94 111-179 (346)
325 COG0191 Fba Fructose/tagatose 85.1 7.2 0.00016 36.1 9.2 106 16-125 154-264 (286)
326 cd00423 Pterin_binding Pterin 85.0 29 0.00062 31.3 13.5 100 15-139 21-129 (258)
327 PRK07998 gatY putative fructos 84.9 10 0.00022 35.0 10.3 128 10-139 76-231 (283)
328 PTZ00314 inosine-5'-monophosph 84.9 23 0.0005 35.3 13.4 75 18-99 178-263 (495)
329 COG0284 PyrF Orotidine-5'-phos 84.7 6.4 0.00014 35.5 8.6 92 11-111 14-110 (240)
330 cd00377 ICL_PEPM Members of th 84.5 12 0.00026 33.6 10.4 119 16-139 82-228 (243)
331 PRK06543 nicotinate-nucleotide 84.5 2.8 6.2E-05 38.7 6.4 72 199-276 179-255 (281)
332 PRK02083 imidazole glycerol ph 84.4 15 0.00034 32.8 11.1 116 19-138 31-174 (253)
333 cd00537 MTHFR Methylenetetrahy 84.4 31 0.00067 31.2 13.2 155 17-177 14-210 (274)
334 PRK12857 fructose-1,6-bisphosp 84.3 14 0.00031 34.1 11.0 128 10-139 76-234 (284)
335 PRK08255 salicylyl-CoA 5-hydro 84.3 6.4 0.00014 41.2 9.7 114 21-136 554-716 (765)
336 PRK06106 nicotinate-nucleotide 84.2 2.3 4.9E-05 39.3 5.6 74 199-277 180-257 (281)
337 PRK07315 fructose-bisphosphate 84.2 35 0.00076 31.6 16.4 211 12-254 23-248 (293)
338 TIGR01769 GGGP geranylgeranylg 84.1 6.2 0.00013 34.7 8.1 68 20-92 136-203 (205)
339 COG0107 HisF Imidazoleglycerol 84.1 6.4 0.00014 35.5 8.1 103 37-157 10-123 (256)
340 PLN02591 tryptophan synthase 84.0 27 0.00059 31.6 12.5 107 145-276 96-208 (250)
341 COG0135 TrpF Phosphoribosylant 84.0 11 0.00023 33.3 9.6 136 123-276 15-172 (208)
342 cd00423 Pterin_binding Pterin 83.9 24 0.00052 31.8 12.2 57 78-134 28-100 (258)
343 cd02930 DCR_FMN 2,4-dienoyl-Co 83.9 11 0.00023 35.7 10.3 114 21-136 140-305 (353)
344 PRK14340 (dimethylallyl)adenos 83.9 6.6 0.00014 38.5 9.0 92 14-111 177-279 (445)
345 cd00956 Transaldolase_FSA Tran 83.8 7.2 0.00016 34.3 8.5 89 45-138 84-186 (211)
346 PF00697 PRAI: N-(5'phosphorib 83.6 3.2 6.9E-05 36.0 6.1 137 123-276 12-165 (197)
347 cd00381 IMPDH IMPDH: The catal 83.5 38 0.00081 31.8 13.7 139 123-269 51-208 (325)
348 TIGR00737 nifR3_yhdG putative 83.5 8.3 0.00018 35.8 9.3 110 27-139 27-169 (319)
349 PF00682 HMGL-like: HMGL-like 83.5 2.8 6.1E-05 36.9 5.9 75 13-91 132-210 (237)
350 cd02911 arch_FMN Archeal FMN-b 83.4 7.4 0.00016 34.7 8.5 77 4-92 142-218 (233)
351 TIGR02127 pyrF_sub2 orotidine 83.4 27 0.00057 31.9 12.2 57 49-110 66-134 (261)
352 cd04738 DHOD_2_like Dihydrooro 83.4 10 0.00022 35.6 9.7 126 6-137 129-309 (327)
353 PF01081 Aldolase: KDPG and KH 83.3 18 0.00038 31.7 10.6 101 22-137 71-176 (196)
354 PRK13587 1-(5-phosphoribosyl)- 83.2 26 0.00057 31.2 12.0 109 21-136 88-220 (234)
355 TIGR00190 thiC thiamine biosyn 83.2 12 0.00026 36.3 10.2 85 73-165 73-185 (423)
356 cd00947 TBP_aldolase_IIB Tagat 83.2 16 0.00036 33.6 10.8 128 10-139 71-228 (276)
357 TIGR01235 pyruv_carbox pyruvat 83.2 24 0.00052 38.9 13.7 80 188-274 709-800 (1143)
358 PRK05692 hydroxymethylglutaryl 83.1 3.2 7E-05 38.3 6.2 73 15-91 152-228 (287)
359 PRK08610 fructose-bisphosphate 83.0 16 0.00036 33.8 10.8 128 10-139 79-235 (286)
360 KOG2794|consensus 83.0 35 0.00077 31.5 12.5 94 10-105 61-188 (340)
361 cd02933 OYE_like_FMN Old yello 82.9 12 0.00025 35.4 10.0 114 21-136 155-313 (338)
362 PF01116 F_bP_aldolase: Fructo 82.6 5.6 0.00012 36.8 7.6 128 10-139 75-237 (287)
363 TIGR01304 IMP_DH_rel_2 IMP deh 82.5 12 0.00025 36.0 9.9 80 53-135 123-214 (369)
364 PRK05927 hypothetical protein; 82.5 4.9 0.00011 38.2 7.3 120 15-148 76-217 (350)
365 PRK06559 nicotinate-nucleotide 82.3 1.7 3.8E-05 40.3 4.1 72 198-276 182-259 (290)
366 PF01136 Peptidase_U32: Peptid 82.3 15 0.00033 32.1 10.1 78 19-112 3-82 (233)
367 COG0821 gcpE 1-hydroxy-2-methy 82.3 38 0.00083 32.2 12.8 141 64-217 19-174 (361)
368 PRK08195 4-hyroxy-2-oxovalerat 82.2 46 0.00099 31.4 16.0 75 17-92 24-106 (337)
369 PRK05742 nicotinate-nucleotide 82.2 3.1 6.8E-05 38.3 5.7 70 202-277 179-252 (277)
370 PRK06843 inosine 5-monophospha 82.1 6.8 0.00015 38.1 8.2 12 258-269 256-267 (404)
371 PRK12330 oxaloacetate decarbox 82.1 6.8 0.00015 39.1 8.4 73 15-91 152-229 (499)
372 PRK07360 FO synthase subunit 2 82.0 29 0.00063 33.1 12.5 72 15-91 91-177 (371)
373 PRK09016 quinolinate phosphori 81.7 4.1 8.9E-05 37.9 6.3 71 200-277 196-271 (296)
374 PRK08072 nicotinate-nucleotide 81.7 13 0.00028 34.3 9.5 80 52-137 175-260 (277)
375 TIGR01769 GGGP geranylgeranylg 81.6 3.4 7.4E-05 36.4 5.5 60 75-136 135-204 (205)
376 COG0159 TrpA Tryptophan syntha 81.4 44 0.00095 30.7 12.9 123 6-130 17-170 (265)
377 PRK05437 isopentenyl pyrophosp 81.0 10 0.00022 36.0 9.0 86 53-138 109-218 (352)
378 PRK08575 5-methyltetrahydropte 80.9 38 0.00082 31.7 12.6 74 20-99 163-243 (326)
379 PRK11320 prpB 2-methylisocitra 80.9 26 0.00056 32.5 11.3 118 16-138 91-235 (292)
380 PF01645 Glu_synthase: Conserv 80.8 5.2 0.00011 38.4 6.8 81 53-136 192-302 (368)
381 PRK06978 nicotinate-nucleotide 80.8 1.8 3.8E-05 40.3 3.6 68 203-277 196-268 (294)
382 cd01573 modD_like ModD; Quinol 80.7 4.1 8.8E-05 37.4 5.9 73 200-276 171-248 (272)
383 TIGR00167 cbbA ketose-bisphosp 80.7 20 0.00044 33.2 10.5 128 10-139 79-238 (288)
384 cd07938 DRE_TIM_HMGL 3-hydroxy 80.6 5.3 0.00011 36.6 6.6 74 16-91 147-222 (274)
385 PRK09454 ugpQ cytoplasmic glyc 80.4 12 0.00025 33.5 8.7 85 48-136 148-236 (249)
386 cd04737 LOX_like_FMN L-Lactate 80.4 30 0.00065 33.0 11.8 118 15-136 135-304 (351)
387 PRK06106 nicotinate-nucleotide 80.3 12 0.00025 34.7 8.8 79 52-137 181-266 (281)
388 PRK06512 thiamine-phosphate py 80.3 25 0.00054 31.2 10.6 100 24-136 80-191 (221)
389 TIGR01211 ELP3 histone acetylt 80.2 12 0.00027 37.5 9.6 45 19-64 119-167 (522)
390 cd02931 ER_like_FMN Enoate red 80.2 6.1 0.00013 37.9 7.2 115 22-136 154-334 (382)
391 COG0362 Gnd 6-phosphogluconate 80.0 19 0.00042 35.1 10.2 70 143-222 35-104 (473)
392 TIGR02129 hisA_euk phosphoribo 79.9 8.6 0.00019 35.0 7.6 63 21-94 41-104 (253)
393 PF02219 MTHFR: Methylenetetra 79.9 20 0.00043 32.8 10.3 158 18-178 27-223 (287)
394 PF04055 Radical_SAM: Radical 79.9 28 0.0006 27.5 11.6 80 17-99 30-112 (166)
395 cd07948 DRE_TIM_HCS Saccharomy 79.8 47 0.001 30.1 14.2 86 188-276 161-257 (262)
396 COG0620 MetE Methionine syntha 79.8 52 0.0011 31.1 13.1 85 10-94 149-242 (330)
397 PF01487 DHquinase_I: Type I 3 79.8 25 0.00054 30.8 10.5 133 10-152 2-164 (224)
398 PF00478 IMPDH: IMP dehydrogen 79.8 30 0.00065 33.1 11.5 106 157-269 98-222 (352)
399 PRK14041 oxaloacetate decarbox 79.8 17 0.00036 36.1 10.2 132 16-155 151-311 (467)
400 cd03174 DRE_TIM_metallolyase D 79.7 9.2 0.0002 34.0 7.8 74 15-91 143-219 (265)
401 cd08556 GDPD Glycerophosphodie 79.7 11 0.00025 31.2 8.0 85 48-135 97-186 (189)
402 PRK11815 tRNA-dihydrouridine s 79.7 7.8 0.00017 36.5 7.6 76 63-138 63-172 (333)
403 PLN02460 indole-3-glycerol-pho 79.7 19 0.00042 34.1 10.1 191 52-253 119-334 (338)
404 TIGR03326 rubisco_III ribulose 79.6 21 0.00046 34.8 10.7 94 8-112 215-326 (412)
405 TIGR01579 MiaB-like-C MiaB-lik 79.6 21 0.00045 34.4 10.7 93 13-111 165-269 (414)
406 TIGR01306 GMP_reduct_2 guanosi 79.6 56 0.0012 30.8 14.0 106 159-269 84-209 (321)
407 cd08567 GDPD_SpGDE_like Glycer 79.5 10 0.00022 33.8 8.0 84 49-135 170-257 (263)
408 PRK09196 fructose-1,6-bisphosp 79.3 19 0.00041 34.3 10.0 101 17-139 172-279 (347)
409 TIGR02320 PEP_mutase phosphoen 79.3 29 0.00063 32.1 11.1 120 15-138 89-241 (285)
410 PRK08599 coproporphyrinogen II 79.2 18 0.00038 34.4 10.0 125 19-153 36-175 (377)
411 cd01572 QPRTase Quinolinate ph 79.2 2.4 5.1E-05 38.8 3.8 69 202-277 171-245 (268)
412 TIGR01182 eda Entner-Doudoroff 79.0 31 0.00068 30.3 10.7 100 22-136 71-175 (204)
413 PRK14331 (dimethylallyl)adenos 78.8 29 0.00062 33.8 11.5 92 14-111 174-276 (437)
414 TIGR03849 arch_ComA phosphosul 78.8 27 0.00057 31.6 10.3 125 18-158 71-209 (237)
415 cd04743 NPD_PKS 2-Nitropropane 78.8 14 0.0003 34.8 8.9 80 54-137 45-130 (320)
416 TIGR01305 GMP_reduct_1 guanosi 78.7 7.8 0.00017 36.8 7.1 66 22-93 110-177 (343)
417 cd08583 PI-PLCc_GDPD_SF_unchar 78.7 15 0.00034 32.3 8.9 86 48-135 140-231 (237)
418 PRK14336 (dimethylallyl)adenos 78.7 11 0.00024 36.5 8.6 92 14-111 152-255 (418)
419 cd04727 pdxS PdxS is a subunit 78.7 44 0.00095 31.0 11.8 68 21-99 77-144 (283)
420 TIGR00078 nadC nicotinate-nucl 78.4 15 0.00032 33.6 8.8 77 53-136 166-249 (265)
421 PRK06978 nicotinate-nucleotide 78.4 15 0.00033 34.2 8.9 78 53-137 194-277 (294)
422 PRK13753 dihydropteroate synth 78.3 8.1 0.00018 35.7 7.0 59 76-135 27-101 (279)
423 PRK13523 NADPH dehydrogenase N 78.3 4.1 9E-05 38.5 5.3 111 22-136 146-304 (337)
424 PRK13305 sgbH 3-keto-L-gulonat 78.3 25 0.00054 31.2 10.0 69 71-139 10-89 (218)
425 PRK05481 lipoyl synthase; Prov 78.2 12 0.00027 34.4 8.3 90 15-109 80-174 (289)
426 cd08207 RLP_NonPhot Ribulose b 78.2 54 0.0012 32.0 12.9 117 8-136 214-360 (406)
427 TIGR01093 aroD 3-dehydroquinat 78.0 24 0.00051 31.2 9.8 127 7-138 1-156 (228)
428 PRK04302 triosephosphate isome 77.9 48 0.001 29.1 13.0 166 69-253 37-219 (223)
429 COG5016 Pyruvate/oxaloacetate 77.9 5.3 0.00011 38.8 5.8 72 16-91 154-228 (472)
430 PLN02716 nicotinate-nucleotide 77.9 4.2 9.2E-05 38.0 5.1 32 245-276 248-280 (308)
431 TIGR00284 dihydropteroate synt 77.8 74 0.0016 31.9 14.1 60 76-135 167-233 (499)
432 PRK13352 thiamine biosynthesis 77.7 74 0.0016 31.1 14.1 44 119-165 142-188 (431)
433 TIGR00693 thiE thiamine-phosph 77.7 42 0.00092 28.4 12.1 32 245-276 139-170 (196)
434 COG0502 BioB Biotin synthase a 77.6 13 0.00028 35.2 8.3 181 19-235 88-289 (335)
435 COG0191 Fba Fructose/tagatose 77.6 34 0.00073 31.8 10.8 129 9-139 76-236 (286)
436 PTZ00413 lipoate synthase; Pro 77.6 28 0.0006 33.8 10.6 79 15-97 177-262 (398)
437 cd02803 OYE_like_FMN_family Ol 77.5 10 0.00023 35.0 7.7 71 19-91 229-308 (327)
438 PRK05437 isopentenyl pyrophosp 77.4 38 0.00083 32.1 11.6 25 245-269 248-272 (352)
439 TIGR02151 IPP_isom_2 isopenten 77.3 46 0.00099 31.3 12.0 74 20-95 133-211 (333)
440 cd08148 RuBisCO_large Ribulose 77.3 27 0.00059 33.5 10.6 93 8-111 198-306 (366)
441 smart00518 AP2Ec AP endonuclea 77.2 47 0.001 29.6 11.7 54 18-71 10-65 (273)
442 PLN03228 methylthioalkylmalate 76.9 11 0.00024 37.7 8.0 73 14-91 235-315 (503)
443 KOG2335|consensus 76.7 46 0.001 31.8 11.7 125 8-136 76-232 (358)
444 PRK10550 tRNA-dihydrouridine s 76.6 13 0.00028 34.8 8.0 76 64-139 62-170 (312)
445 PRK00366 ispG 4-hydroxy-3-meth 76.6 48 0.001 31.7 11.7 141 64-217 25-181 (360)
446 cd00465 URO-D_CIMS_like The UR 76.6 59 0.0013 29.5 12.4 19 20-38 146-164 (306)
447 PRK14335 (dimethylallyl)adenos 76.5 54 0.0012 32.1 12.8 93 14-111 180-289 (455)
448 cd06556 ICL_KPHMT Members of t 76.5 43 0.00092 30.2 11.1 83 53-138 62-177 (240)
449 TIGR02660 nifV_homocitr homoci 76.5 71 0.0015 30.3 15.2 71 19-97 24-95 (365)
450 TIGR01858 tag_bisphos_ald clas 76.5 14 0.00031 34.1 8.2 80 17-97 152-233 (282)
451 TIGR01303 IMP_DH_rel_1 IMP deh 76.4 18 0.00039 35.9 9.4 71 197-269 251-339 (475)
452 PRK00915 2-isopropylmalate syn 76.1 8 0.00017 38.7 6.9 73 14-91 145-225 (513)
453 PF14806 Coatomer_b_Cpla: Coat 76.0 4.2 9.1E-05 33.2 4.0 52 33-86 8-60 (129)
454 TIGR00190 thiC thiamine biosyn 75.8 82 0.0018 30.7 15.2 95 4-111 59-174 (423)
455 PF01717 Meth_synt_2: Cobalami 75.7 20 0.00044 33.2 9.2 78 19-96 155-242 (324)
456 TIGR00510 lipA lipoate synthas 75.7 17 0.00036 33.9 8.5 90 16-110 92-186 (302)
457 cd07940 DRE_TIM_IPMS 2-isoprop 75.6 7.8 0.00017 35.1 6.2 72 15-91 140-218 (268)
458 COG0119 LeuA Isopropylmalate/h 75.5 7.6 0.00017 37.8 6.4 74 14-91 142-220 (409)
459 cd07937 DRE_TIM_PC_TC_5S Pyruv 75.5 8 0.00017 35.3 6.2 71 15-91 146-221 (275)
460 cd07943 DRE_TIM_HOA 4-hydroxy- 75.4 9.5 0.00021 34.4 6.7 72 15-91 138-214 (263)
461 PRK13352 thiamine biosynthesis 75.4 85 0.0018 30.7 14.8 34 4-41 59-96 (431)
462 PF01207 Dus: Dihydrouridine s 75.2 6.4 0.00014 36.6 5.6 88 52-139 41-160 (309)
463 PRK06543 nicotinate-nucleotide 75.2 19 0.00041 33.3 8.6 78 53-137 181-265 (281)
464 cd07941 DRE_TIM_LeuA3 Desulfob 75.2 9.2 0.0002 34.9 6.5 71 16-91 149-224 (273)
465 cd07939 DRE_TIM_NifV Streptomy 75.1 62 0.0013 29.0 15.5 72 18-97 20-92 (259)
466 PRK14337 (dimethylallyl)adenos 75.1 25 0.00055 34.3 10.0 92 13-111 175-280 (446)
467 PRK07084 fructose-bisphosphate 74.8 32 0.0007 32.4 10.1 110 17-153 163-281 (321)
468 COG0157 NadC Nicotinate-nucleo 74.3 24 0.00053 32.6 8.9 79 53-137 176-262 (280)
469 cd08556 GDPD Glycerophosphodie 74.2 38 0.00082 28.0 9.7 128 17-155 12-160 (189)
470 PRK05835 fructose-bisphosphate 74.2 46 0.001 31.2 11.0 122 10-133 76-230 (307)
471 TIGR00677 fadh2_euk methylenet 74.1 72 0.0016 29.3 13.1 157 7-169 5-203 (281)
472 PRK12737 gatY tagatose-bisphos 74.0 19 0.00042 33.2 8.4 78 17-97 154-235 (284)
473 TIGR00612 ispG_gcpE 1-hydroxy- 74.0 83 0.0018 29.9 13.8 72 11-92 24-98 (346)
474 PRK11475 DNA-binding transcrip 74.0 18 0.00038 31.6 7.8 73 17-91 23-95 (207)
475 PRK05286 dihydroorotate dehydr 74.0 16 0.00035 34.4 8.1 84 7-96 139-247 (344)
476 PLN02540 methylenetetrahydrofo 73.9 88 0.0019 31.9 13.5 159 10-174 7-216 (565)
477 cd04734 OYE_like_3_FMN Old yel 73.9 38 0.00081 32.0 10.5 117 20-136 143-314 (343)
478 PRK05628 coproporphyrinogen II 73.7 38 0.00083 32.1 10.7 72 78-153 109-183 (375)
479 COG0106 HisA Phosphoribosylfor 73.7 70 0.0015 29.0 13.1 115 19-137 32-167 (241)
480 PF05853 DUF849: Prokaryotic p 73.5 9.5 0.00021 34.9 6.2 112 61-176 17-160 (272)
481 PRK14114 1-(5-phosphoribosyl)- 73.5 69 0.0015 28.8 12.4 111 21-136 33-163 (241)
482 PRK04128 1-(5-phosphoribosyl)- 73.5 66 0.0014 28.5 13.8 151 73-235 29-206 (228)
483 PRK12581 oxaloacetate decarbox 73.4 11 0.00024 37.3 6.9 70 16-91 161-235 (468)
484 TIGR00875 fsa_talC_mipB fructo 73.3 16 0.00034 32.3 7.4 90 45-138 84-186 (213)
485 PRK07709 fructose-bisphosphate 73.2 22 0.00048 32.9 8.5 78 17-97 155-236 (285)
486 cd08563 GDPD_TtGDE_like Glycer 73.2 21 0.00047 31.1 8.3 84 49-135 140-226 (230)
487 COG0320 LipA Lipoate synthase 73.1 35 0.00076 31.6 9.5 114 15-137 97-248 (306)
488 cd08579 GDPD_memb_like Glycero 72.5 19 0.00041 31.2 7.7 81 48-135 133-216 (220)
489 cd08209 RLP_DK-MTP-1-P-enolase 72.4 43 0.00094 32.4 10.6 92 8-111 195-304 (391)
490 PRK12738 kbaY tagatose-bisphos 72.4 24 0.00052 32.7 8.6 78 17-97 154-235 (286)
491 PRK02227 hypothetical protein; 72.4 75 0.0016 28.7 17.1 177 74-255 8-232 (238)
492 PRK08207 coproporphyrinogen II 72.3 19 0.0004 35.9 8.4 95 53-153 239-344 (488)
493 PRK05567 inosine 5'-monophosph 72.3 12 0.00027 37.0 7.1 145 119-269 167-342 (486)
494 PRK15452 putative protease; Pr 72.2 58 0.0013 32.1 11.6 133 122-268 15-170 (443)
495 TIGR00973 leuA_bact 2-isopropy 72.2 18 0.0004 36.0 8.3 73 14-91 142-222 (494)
496 cd08205 RuBisCO_IV_RLP Ribulos 72.2 51 0.0011 31.5 11.1 92 8-111 201-307 (367)
497 TIGR00078 nadC nicotinate-nucl 72.2 4.5 9.7E-05 37.0 3.7 71 201-277 166-241 (265)
498 cd00405 PRAI Phosphoribosylant 72.2 36 0.00079 29.2 9.3 112 22-139 10-129 (203)
499 PLN02321 2-isopropylmalate syn 71.9 15 0.00032 37.9 7.7 74 14-91 236-316 (632)
500 PLN02746 hydroxymethylglutaryl 71.5 11 0.00024 35.8 6.3 73 15-91 194-270 (347)
No 1
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.5e-60 Score=414.07 Aligned_cols=207 Identities=43% Similarity=0.740 Sum_probs=196.1
Q ss_pred CceEeeeccccCcccHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHH
Q psy11600 5 QCMIGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMA 84 (277)
Q Consensus 5 ~~~~~~s~~~~d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~ 84 (277)
+.+|+|||||+|+.++++|+++++++|+||+|+|||||+||||+||||+.++++|+ .|++|+||||||.+|++|++.|.
T Consensus 3 ~~~iapSILsaD~~~l~~el~~~~~agad~iH~DVMDghFVPNiTfGp~~v~~l~~-~t~~p~DvHLMV~~p~~~i~~fa 81 (220)
T COG0036 3 MMKIAPSILSADFARLGEELKALEAAGADLIHIDVMDGHFVPNITFGPPVVKALRK-ITDLPLDVHLMVENPDRYIEAFA 81 (220)
T ss_pred CceeeeehhhCCHhHHHHHHHHHHHcCCCEEEEeccCCCcCCCcccCHHHHHHHhh-cCCCceEEEEecCCHHHHHHHHH
Confidence 46799999999999999999999999999999999999999999999999999998 59999999999999999999999
Q ss_pred hcCCCeEEEeccCCCCCHHHHHHHHhhCCCcccchhhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCCccceeeCC
Q psy11600 85 DANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKP 164 (277)
Q Consensus 85 ~ag~d~i~~H~e~~d~g~~~i~~i~~~~~~~~d~p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~i~p 164 (277)
++|||+||||+|+.. ++.++++.||+.|+++|+++||
T Consensus 82 ~agad~It~H~E~~~-------------------------------------------~~~r~i~~Ik~~G~kaGv~lnP 118 (220)
T COG0036 82 KAGADIITFHAEATE-------------------------------------------HIHRTIQLIKELGVKAGLVLNP 118 (220)
T ss_pred HhCCCEEEEEeccCc-------------------------------------------CHHHHHHHHHHcCCeEEEEECC
Confidence 999999999999655 7889999999999999999999
Q ss_pred CCCHHhHHHHHhhcCceEEEEecCCCCCchhhhhhhhhHHHHHhhCC---CccEEEeCCCCcCcHHHHHHccCCC---CC
Q psy11600 165 KTPVDVIAEYIESADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYP---TLNIEVDGGVGPNTIDECAKCLTGF---GG 238 (277)
Q Consensus 165 ~t~~~~i~~~i~~~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~~---~~~i~vdGgV~~~tv~~~~~~gpg~---gg 238 (277)
+||++.++++++.+|++++|||||||+||+|++++++||++++++.+ ++.|+|||||+.+|+++|.++|+++ |+
T Consensus 119 ~Tp~~~i~~~l~~vD~VllMsVnPGfgGQ~Fi~~~l~Ki~~lr~~~~~~~~~~IeVDGGI~~~t~~~~~~AGad~~VaGS 198 (220)
T COG0036 119 ATPLEALEPVLDDVDLVLLMSVNPGFGGQKFIPEVLEKIRELRAMIDERLDILIEVDGGINLETIKQLAAAGADVFVAGS 198 (220)
T ss_pred CCCHHHHHHHHhhCCEEEEEeECCCCcccccCHHHHHHHHHHHHHhcccCCeEEEEeCCcCHHHHHHHHHcCCCEEEEEE
Confidence 99999999999999999999999999999999999999999999887 6889999999999999999999997 88
Q ss_pred ccccc-CHHHHHHHHHhh
Q psy11600 239 QKFMQ-DMMPKVKWLREN 255 (277)
Q Consensus 239 q~F~~-~~~~kI~~l~~~ 255 (277)
..|.. +..+++++++..
T Consensus 199 alF~~~d~~~~i~~~~~~ 216 (220)
T COG0036 199 ALFGADDYKATIRELRGE 216 (220)
T ss_pred EEeCCccHHHHHHHHHHH
Confidence 88885 577788877753
No 2
>KOG3111|consensus
Probab=100.00 E-value=2.5e-59 Score=395.92 Aligned_cols=208 Identities=56% Similarity=0.977 Sum_probs=196.4
Q ss_pred CCCceEeeeccccCcccHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCC--eeeeeeeccCcHHhH
Q psy11600 3 HVQCMIGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKA--FFETHMMVQNPQQWI 80 (277)
Q Consensus 3 ~~~~~~~~s~~~~d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~--~~d~Hlmv~~p~~~i 80 (277)
.++++|+||||++|+.||++|+++++++|+||||+|||||+||||||||+.+|++||+. ++. +||+||||.||++|+
T Consensus 2 ~~~~~I~PSIL~~dfanL~~e~~~~l~~GadwlHlDVMDg~FVpNiT~G~pvV~slR~~-~~~~~ffD~HmMV~~Peq~V 80 (224)
T KOG3111|consen 2 MVKPKIAPSILSSDFANLAAECKKMLDAGADWLHLDVMDGHFVPNITFGPPVVESLRKH-TGADPFFDVHMMVENPEQWV 80 (224)
T ss_pred CcCceechhhhccchHHHHHHHHHHHHcCCCeEEEeeecccccCCcccchHHHHHHHhc-cCCCcceeEEEeecCHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999985 555 599999999999999
Q ss_pred HHHHhcCCCeEEEeccCCCCCHHHHHHHHhhCCCcccchhhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCCccce
Q psy11600 81 EPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGL 160 (277)
Q Consensus 81 ~~l~~ag~d~i~~H~e~~d~g~~~i~~i~~~~~~~~d~p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~~g~ 160 (277)
+.+.++|++.+|||+|+.+ .+.++.+.||+.|++.|+
T Consensus 81 ~~~a~agas~~tfH~E~~q-------------------------------------------~~~~lv~~ir~~Gmk~G~ 117 (224)
T KOG3111|consen 81 DQMAKAGASLFTFHYEATQ-------------------------------------------KPAELVEKIREKGMKVGL 117 (224)
T ss_pred HHHHhcCcceEEEEEeecc-------------------------------------------CHHHHHHHHHHcCCeeeE
Confidence 9999999999999999988 677899999999999999
Q ss_pred eeCCCCCHHhHHHHHhhcCceEEEEecCCCCCchhhhhhhhhHHHHHhhCCCccEEEeCCCCcCcHHHHHHccCCC---C
Q psy11600 161 AIKPKTPVDVIAEYIESADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKCLTGF---G 237 (277)
Q Consensus 161 ~i~p~t~~~~i~~~i~~~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~~~~~i~vdGgV~~~tv~~~~~~gpg~---g 237 (277)
++|||||++.++++...+|++|+|+|+|||+||+|++++++|++++|+.+|+++|+||||+...|+..+.++|++. |
T Consensus 118 alkPgT~Ve~~~~~~~~~D~vLvMtVePGFGGQkFme~mm~KV~~lR~kyp~l~ievDGGv~~~ti~~~a~AGAN~iVaG 197 (224)
T KOG3111|consen 118 ALKPGTPVEDLEPLAEHVDMVLVMTVEPGFGGQKFMEDMMPKVEWLREKYPNLDIEVDGGVGPSTIDKAAEAGANMIVAG 197 (224)
T ss_pred EeCCCCcHHHHHHhhccccEEEEEEecCCCchhhhHHHHHHHHHHHHHhCCCceEEecCCcCcchHHHHHHcCCCEEEec
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999997 8
Q ss_pred Cccccc-CHHHHHHHHHh
Q psy11600 238 GQKFMQ-DMMPKVKWLRE 254 (277)
Q Consensus 238 gq~F~~-~~~~kI~~l~~ 254 (277)
+..|.. +.-+-|+.+|.
T Consensus 198 savf~a~d~~~vi~~lr~ 215 (224)
T KOG3111|consen 198 SAVFGAADPSDVISLLRN 215 (224)
T ss_pred ceeecCCCHHHHHHHHHH
Confidence 889984 66666666664
No 3
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=100.00 E-value=2.7e-57 Score=401.30 Aligned_cols=208 Identities=36% Similarity=0.619 Sum_probs=194.2
Q ss_pred CceEeeeccccCcccHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHH
Q psy11600 5 QCMIGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMA 84 (277)
Q Consensus 5 ~~~~~~s~~~~d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~ 84 (277)
++.|+|||||+|+.+|+++++++++.|+||+|+|||||+||||++|||++++++|+..|++++||||||.||++|++.+.
T Consensus 3 ~~~i~pSil~ad~~~l~~~i~~l~~~g~d~lHiDimDG~FVPN~tfg~~~i~~lr~~~~~~~~dvHLMv~~P~~~i~~~~ 82 (223)
T PRK08745 3 PTAIAPSILSADFARLGEEVDNVLKAGADWVHFDVMDNHYVPNLTIGPMVCQALRKHGITAPIDVHLMVEPVDRIVPDFA 82 (223)
T ss_pred CcEEEeehhhcCHHHHHHHHHHHHHcCCCEEEEecccCccCCCcccCHHHHHHHHhhCCCCCEEEEeccCCHHHHHHHHH
Confidence 34799999999999999999999999999999999999999999999999999998437999999999999999999999
Q ss_pred hcCCCeEEEeccCCCCCHHHHHHHHhhCCCcccchhhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCCccceeeCC
Q psy11600 85 DANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKP 164 (277)
Q Consensus 85 ~ag~d~i~~H~e~~d~g~~~i~~i~~~~~~~~d~p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~i~p 164 (277)
++|+|+++||+|+.+ ++.+.++.||+.|+++|+++||
T Consensus 83 ~~gad~I~~H~Ea~~-------------------------------------------~~~~~l~~Ir~~g~k~GlalnP 119 (223)
T PRK08745 83 DAGATTISFHPEASR-------------------------------------------HVHRTIQLIKSHGCQAGLVLNP 119 (223)
T ss_pred HhCCCEEEEcccCcc-------------------------------------------cHHHHHHHHHHCCCceeEEeCC
Confidence 999999999999877 7788999999999999999999
Q ss_pred CCCHHhHHHHHhhcCceEEEEecCCCCCchhhhhhhhhHHHHHhhC----CCccEEEeCCCCcCcHHHHHHccCCC---C
Q psy11600 165 KTPVDVIAEYIESADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENY----PTLNIEVDGGVGPNTIDECAKCLTGF---G 237 (277)
Q Consensus 165 ~t~~~~i~~~i~~~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~----~~~~i~vdGgV~~~tv~~~~~~gpg~---g 237 (277)
+||++.++++++.+|++++|||+|||+||+|+++.++||++++++. .++.|+|||||+.+|+++|.++|++. |
T Consensus 120 ~T~~~~i~~~l~~vD~VlvMtV~PGf~GQ~fi~~~l~KI~~l~~~~~~~~~~~~IeVDGGI~~eti~~l~~aGaDi~V~G 199 (223)
T PRK08745 120 ATPVDILDWVLPELDLVLVMSVNPGFGGQAFIPSALDKLRAIRKKIDALGKPIRLEIDGGVKADNIGAIAAAGADTFVAG 199 (223)
T ss_pred CCCHHHHHHHHhhcCEEEEEEECCCCCCccccHHHHHHHHHHHHHHHhcCCCeeEEEECCCCHHHHHHHHHcCCCEEEEC
Confidence 9999999999999999999999999999999999999999999873 45789999999999999999999996 8
Q ss_pred Ccccc-cCHHHHHHHHHhh
Q psy11600 238 GQKFM-QDMMPKVKWLREN 255 (277)
Q Consensus 238 gq~F~-~~~~~kI~~l~~~ 255 (277)
+..|. ++..+.++++|+.
T Consensus 200 SaiF~~~d~~~~~~~lr~~ 218 (223)
T PRK08745 200 SAIFNAPDYAQVIAQMRAA 218 (223)
T ss_pred hhhhCCCCHHHHHHHHHHH
Confidence 88886 4677778877754
No 4
>PRK08005 epimerase; Validated
Probab=100.00 E-value=2.8e-57 Score=397.26 Aligned_cols=203 Identities=28% Similarity=0.427 Sum_probs=191.6
Q ss_pred ceEeeeccccCcccHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHh
Q psy11600 6 CMIGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMAD 85 (277)
Q Consensus 6 ~~~~~s~~~~d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ 85 (277)
+.|+|||||+|+.+|++++++++++|+||+|+|||||+||||++|||++++++|+ +|++++|+||||.||++|++.+.+
T Consensus 1 ~~i~pSil~ad~~~l~~el~~l~~~g~d~lHiDvMDG~FVPN~tfG~~~i~~l~~-~t~~~~DvHLMv~~P~~~i~~~~~ 79 (210)
T PRK08005 1 MILHPSLASADPLRYAEALTALHDAPLGSLHLDIEDTSFINNITFGMKTIQAVAQ-QTRHPLSFHLMVSSPQRWLPWLAA 79 (210)
T ss_pred CEEEeehhhCCHHHHHHHHHHHHHCCCCEEEEeccCCCcCCccccCHHHHHHHHh-cCCCCeEEEeccCCHHHHHHHHHH
Confidence 3689999999999999999999999999999999999999999999999999998 599999999999999999999999
Q ss_pred cCCCeEEEeccCCCCCHHHHHHHHhhCCCcccchhhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCCccceeeCCC
Q psy11600 86 ANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPK 165 (277)
Q Consensus 86 ag~d~i~~H~e~~d~g~~~i~~i~~~~~~~~d~p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~i~p~ 165 (277)
+|+|++|||+|+.. ++.+.++.||+.|+++|+++||+
T Consensus 80 ~gad~It~H~Ea~~-------------------------------------------~~~~~l~~Ik~~G~k~GlAlnP~ 116 (210)
T PRK08005 80 IRPGWIFIHAESVQ-------------------------------------------NPSEILADIRAIGAKAGLALNPA 116 (210)
T ss_pred hCCCEEEEcccCcc-------------------------------------------CHHHHHHHHHHcCCcEEEEECCC
Confidence 99999999999876 67789999999999999999999
Q ss_pred CCHHhHHHHHhhcCceEEEEecCCCCCchhhhhhhhhHHHHHhhCCCccEEEeCCCCcCcHHHHHHccCCC---CCcccc
Q psy11600 166 TPVDVIAEYIESADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKCLTGF---GGQKFM 242 (277)
Q Consensus 166 t~~~~i~~~i~~~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~~~~~i~vdGgV~~~tv~~~~~~gpg~---ggq~F~ 242 (277)
||++.++++++.+|++++|+|+|||+||+|++++++||++++++.++.+|+||||||.+|+++|.++|++. |+..|.
T Consensus 117 Tp~~~i~~~l~~vD~VlvMsV~PGf~GQ~f~~~~~~KI~~l~~~~~~~~I~VDGGI~~~~i~~l~~aGad~~V~GsaiF~ 196 (210)
T PRK08005 117 TPLLPYRYLALQLDALMIMTSEPDGRGQQFIAAMCEKVSQSREHFPAAECWADGGITLRAARLLAAAGAQHLVIGRALFT 196 (210)
T ss_pred CCHHHHHHHHHhcCEEEEEEecCCCccceecHHHHHHHHHHHHhcccCCEEEECCCCHHHHHHHHHCCCCEEEEChHhhC
Confidence 99999999999999999999999999999999999999999999888889999999999999999999996 788886
Q ss_pred -cCHHHHHHHH
Q psy11600 243 -QDMMPKVKWL 252 (277)
Q Consensus 243 -~~~~~kI~~l 252 (277)
++..+.++++
T Consensus 197 ~~d~~~~~~~~ 207 (210)
T PRK08005 197 TANYDVTLSQF 207 (210)
T ss_pred CCCHHHHHHHH
Confidence 3555666554
No 5
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=100.00 E-value=5.5e-56 Score=393.72 Aligned_cols=207 Identities=35% Similarity=0.597 Sum_probs=190.6
Q ss_pred CceEeeeccccCcccHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHH
Q psy11600 5 QCMIGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMA 84 (277)
Q Consensus 5 ~~~~~~s~~~~d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~ 84 (277)
+.+|+|||||+|+.+|+++++++++ |+||+|+|||||+||||++||+++++++|+ +|++++||||||.||++|++.|.
T Consensus 2 ~~~I~pSil~ad~~~l~~el~~l~~-g~d~lH~DiMDG~FVPN~tfg~~~i~~ir~-~t~~~~DvHLMv~~P~~~i~~~~ 79 (229)
T PRK09722 2 RMKISPSLMCMDLLKFKEQIEFLNS-KADYFHIDIMDGHFVPNLTLSPFFVSQVKK-LASKPLDVHLMVTDPQDYIDQLA 79 (229)
T ss_pred CceEEeehhhcCHHHHHHHHHHHHh-CCCEEEEecccCccCCCcccCHHHHHHHHh-cCCCCeEEEEEecCHHHHHHHHH
Confidence 3579999999999999999999998 899999999999999999999999999998 59999999999999999999999
Q ss_pred hcCCCeEEEeccCCCCCHHHHHHHHhhCCCcccchhhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCCccceeeCC
Q psy11600 85 DANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKP 164 (277)
Q Consensus 85 ~ag~d~i~~H~e~~d~g~~~i~~i~~~~~~~~d~p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~i~p 164 (277)
++|+|+++||+|+.+. ++.+.++.||+.|+++|+++||
T Consensus 80 ~aGad~it~H~Ea~~~------------------------------------------~~~~~i~~Ik~~G~kaGlalnP 117 (229)
T PRK09722 80 DAGADFITLHPETING------------------------------------------QAFRLIDEIRRAGMKVGLVLNP 117 (229)
T ss_pred HcCCCEEEECccCCcc------------------------------------------hHHHHHHHHHHcCCCEEEEeCC
Confidence 9999999999997631 5678899999999999999999
Q ss_pred CCCHHhHHHHHhhcCceEEEEecCCCCCchhhhhhhhhHHHHHhhCC----CccEEEeCCCCcCcHHHHHHccCCC---C
Q psy11600 165 KTPVDVIAEYIESADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYP----TLNIEVDGGVGPNTIDECAKCLTGF---G 237 (277)
Q Consensus 165 ~t~~~~i~~~i~~~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~~----~~~i~vdGgV~~~tv~~~~~~gpg~---g 237 (277)
+||++.++++++.+|++++|+|+|||+||+|++++++||++++++.+ ++.|+|||||+.+|+.+|.++|++. |
T Consensus 118 ~T~~~~l~~~l~~vD~VLvMsV~PGf~GQ~fi~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~~~~i~~~~~aGad~~V~G 197 (229)
T PRK09722 118 ETPVESIKYYIHLLDKITVMTVDPGFAGQPFIPEMLDKIAELKALRERNGLEYLIEVDGSCNQKTYEKLMEAGADVFIVG 197 (229)
T ss_pred CCCHHHHHHHHHhcCEEEEEEEcCCCcchhccHHHHHHHHHHHHHHHhcCCCeEEEEECCCCHHHHHHHHHcCCCEEEEC
Confidence 99999999999999999999999999999999999999999998643 5789999999999999999999995 6
Q ss_pred Cc-ccc--cCHHHHHHHHHhh
Q psy11600 238 GQ-KFM--QDMMPKVKWLREN 255 (277)
Q Consensus 238 gq-~F~--~~~~~kI~~l~~~ 255 (277)
+. .|. ++..+.++.+|+.
T Consensus 198 ss~iF~~~~d~~~~i~~l~~~ 218 (229)
T PRK09722 198 TSGLFNLDEDIDEAWDIMTAQ 218 (229)
T ss_pred hHHHcCCCCCHHHHHHHHHHH
Confidence 44 886 3677777777753
No 6
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=100.00 E-value=1.3e-55 Score=390.45 Aligned_cols=204 Identities=22% Similarity=0.373 Sum_probs=190.2
Q ss_pred CceEeeeccccCcccHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHH
Q psy11600 5 QCMIGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMA 84 (277)
Q Consensus 5 ~~~~~~s~~~~d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~ 84 (277)
+..|+|||||+|+.+|++++++++++|+||+|+|||||+||||++|||++++++|+ ++++||||||.||++|++.|.
T Consensus 12 ~~~I~pSil~ad~~~l~~el~~l~~~g~d~lHiDVMDG~FVPNitfGp~~i~~i~~---~~~~DvHLMv~~P~~~i~~~~ 88 (228)
T PRK08091 12 QQPISVGILASNWLKFNETLTTLSENQLRLLHFDIADGQFSPFFTVGAIAIKQFPT---HCFKDVHLMVRDQFEVAKACV 88 (228)
T ss_pred CCeEEeehhhcCHHHHHHHHHHHHHCCCCEEEEeccCCCcCCccccCHHHHHHhCC---CCCEEEEeccCCHHHHHHHHH
Confidence 45799999999999999999999999999999999999999999999999999973 789999999999999999999
Q ss_pred hcCCCeEEEeccCCCCCHHHHHHHHhhCCCcccchhhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCC--ccceee
Q psy11600 85 DANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGM--KVGLAI 162 (277)
Q Consensus 85 ~ag~d~i~~H~e~~d~g~~~i~~i~~~~~~~~d~p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~--~~g~~i 162 (277)
++|+|+++||+|+.. ++.+.++.||+.|+ ++|+++
T Consensus 89 ~aGad~It~H~Ea~~-------------------------------------------~~~~~l~~Ik~~g~~~kaGlal 125 (228)
T PRK08091 89 AAGADIVTLQVEQTH-------------------------------------------DLALTIEWLAKQKTTVLIGLCL 125 (228)
T ss_pred HhCCCEEEEcccCcc-------------------------------------------cHHHHHHHHHHCCCCceEEEEE
Confidence 999999999999876 67789999999999 999999
Q ss_pred CCCCCHHhHHHHHhhcCceEEEEecCCCCCchhhhhhhhhHHHHHhhC----CCccEEEeCCCCcCcHHHHHHccCCC--
Q psy11600 163 KPKTPVDVIAEYIESADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENY----PTLNIEVDGGVGPNTIDECAKCLTGF-- 236 (277)
Q Consensus 163 ~p~t~~~~i~~~i~~~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~----~~~~i~vdGgV~~~tv~~~~~~gpg~-- 236 (277)
||+||++.++++++.+|++++|||+|||+||+|++.+++||++++++. .++.|+||||||.+|+++|.++|++.
T Consensus 126 nP~Tp~~~i~~~l~~vD~VLiMtV~PGfgGQ~f~~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~~~ti~~l~~aGaD~~V 205 (228)
T PRK08091 126 CPETPISLLEPYLDQIDLIQILTLDPRTGTKAPSDLILDRVIQVENRLGNRRVEKLISIDGSMTLELASYLKQHQIDWVV 205 (228)
T ss_pred CCCCCHHHHHHHHhhcCEEEEEEECCCCCCccccHHHHHHHHHHHHHHHhcCCCceEEEECCCCHHHHHHHHHCCCCEEE
Confidence 999999999999999999999999999999999999999999998764 35789999999999999999999996
Q ss_pred -CCcccc-cCHHHHHHHHHh
Q psy11600 237 -GGQKFM-QDMMPKVKWLRE 254 (277)
Q Consensus 237 -ggq~F~-~~~~~kI~~l~~ 254 (277)
|+..|. ++..+.+++++.
T Consensus 206 ~GSalF~~~d~~~~i~~l~~ 225 (228)
T PRK08091 206 SGSALFSQGELKTTLKEWKS 225 (228)
T ss_pred EChhhhCCCCHHHHHHHHHH
Confidence 778886 466677777764
No 7
>PRK14057 epimerase; Provisional
Probab=100.00 E-value=3.1e-55 Score=392.27 Aligned_cols=205 Identities=22% Similarity=0.312 Sum_probs=190.5
Q ss_pred CceEeeeccccCcccHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHH
Q psy11600 5 QCMIGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMA 84 (277)
Q Consensus 5 ~~~~~~s~~~~d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~ 84 (277)
++.|+|||||+|+.+|+++++++++.|+||+|+|||||+||||++|||++++++|+ ++|+||||||.||++|++.|.
T Consensus 19 ~~~IspSil~aD~~~L~~el~~l~~~g~d~lHiDVMDG~FVPNitfGp~~i~~i~~---~~p~DvHLMV~~P~~~i~~~~ 95 (254)
T PRK14057 19 SYPLSVGILAGQWIALHRYLQQLEALNQPLLHLDLMDGQFCPQFTVGPWAVGQLPQ---TFIKDVHLMVADQWTAAQACV 95 (254)
T ss_pred CCceEeehhhcCHHHHHHHHHHHHHCCCCEEEEeccCCccCCccccCHHHHHHhcc---CCCeeEEeeeCCHHHHHHHHH
Confidence 36799999999999999999999999999999999999999999999999999975 589999999999999999999
Q ss_pred hcCCCeEEEeccCCCCCHHHHHHHHhhCCCcccchhhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCC--------
Q psy11600 85 DANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGM-------- 156 (277)
Q Consensus 85 ~ag~d~i~~H~e~~d~g~~~i~~i~~~~~~~~d~p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~-------- 156 (277)
++|+|+++||+|+.+ ++.+.++.||+.|+
T Consensus 96 ~aGad~It~H~Ea~~-------------------------------------------~~~~~l~~Ir~~G~k~~~~~~~ 132 (254)
T PRK14057 96 KAGAHCITLQAEGDI-------------------------------------------HLHHTLSWLGQQTVPVIGGEMP 132 (254)
T ss_pred HhCCCEEEEeecccc-------------------------------------------CHHHHHHHHHHcCCCccccccc
Confidence 999999999999877 67789999999997
Q ss_pred -ccceeeCCCCCHHhHHHHHhhcCceEEEEecCCCCCchhhhhhhhhHHHHHhhCC----CccEEEeCCCCcCcHHHHHH
Q psy11600 157 -KVGLAIKPKTPVDVIAEYIESADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYP----TLNIEVDGGVGPNTIDECAK 231 (277)
Q Consensus 157 -~~g~~i~p~t~~~~i~~~i~~~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~~----~~~i~vdGgV~~~tv~~~~~ 231 (277)
++|+++||+||++.++++++.+|++++|+|+|||+||+|++++++||++++++.+ ++.|+|||||+.+|+++|.+
T Consensus 133 ~kaGlAlnP~Tp~e~i~~~l~~vD~VLvMtV~PGfgGQ~Fi~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~~~ti~~l~~ 212 (254)
T PRK14057 133 VIRGISLCPATPLDVIIPILSDVEVIQLLAVNPGYGSKMRSSDLHERVAQLLCLLGDKREGKIIVIDGSLTQDQLPSLIA 212 (254)
T ss_pred ceeEEEECCCCCHHHHHHHHHhCCEEEEEEECCCCCchhccHHHHHHHHHHHHHHHhcCCCceEEEECCCCHHHHHHHHH
Confidence 5999999999999999999999999999999999999999999999999988643 58899999999999999999
Q ss_pred ccCCC---CCcccc-cCHHHHHHHHHhh
Q psy11600 232 CLTGF---GGQKFM-QDMMPKVKWLREN 255 (277)
Q Consensus 232 ~gpg~---ggq~F~-~~~~~kI~~l~~~ 255 (277)
+|++. |+..|. ++..+.++.+|+.
T Consensus 213 aGad~~V~GSalF~~~d~~~~i~~l~~~ 240 (254)
T PRK14057 213 QGIDRVVSGSALFRDDRLVENTRSWRAM 240 (254)
T ss_pred CCCCEEEEChHhhCCCCHHHHHHHHHHH
Confidence 99996 788886 4667777777764
No 8
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=100.00 E-value=3.4e-55 Score=387.71 Aligned_cols=206 Identities=36% Similarity=0.647 Sum_probs=193.3
Q ss_pred eEeeeccccCcccHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhc
Q psy11600 7 MIGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADA 86 (277)
Q Consensus 7 ~~~~s~~~~d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~a 86 (277)
.|+|||||+|+.+|+++++++++.|+||+|+|||||+||||++|||++++++|+..|++++||||||.||++|++.|.++
T Consensus 1 ~i~pSil~ad~~~l~~~i~~l~~~g~~~lH~DvmDG~Fvpn~tfg~~~i~~i~~~~~~~~~dvHLMv~~p~~~i~~~~~~ 80 (220)
T PRK08883 1 LIAPSILSADFARLGEDVEKVLAAGADVVHFDVMDNHYVPNLTFGAPICKALRDYGITAPIDVHLMVKPVDRIIPDFAKA 80 (220)
T ss_pred CcchhhhhcCHHHHHHHHHHHHHcCCCEEEEecccCcccCccccCHHHHHHHHHhCCCCCEEEEeccCCHHHHHHHHHHh
Confidence 48999999999999999999999999999999999999999999999999999732799999999999999999999999
Q ss_pred CCCeEEEeccCCCCCHHHHHHHHhhCCCcccchhhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCCccceeeCCCC
Q psy11600 87 NVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKT 166 (277)
Q Consensus 87 g~d~i~~H~e~~d~g~~~i~~i~~~~~~~~d~p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~i~p~t 166 (277)
|+|++|||+|+.+ ++.+.++.||+.|+++|+++||+|
T Consensus 81 gad~i~~H~Ea~~-------------------------------------------~~~~~l~~ik~~g~k~GlalnP~T 117 (220)
T PRK08883 81 GASMITFHVEASE-------------------------------------------HVDRTLQLIKEHGCQAGVVLNPAT 117 (220)
T ss_pred CCCEEEEcccCcc-------------------------------------------cHHHHHHHHHHcCCcEEEEeCCCC
Confidence 9999999999877 778899999999999999999999
Q ss_pred CHHhHHHHHhhcCceEEEEecCCCCCchhhhhhhhhHHHHHhhCC----CccEEEeCCCCcCcHHHHHHccCCC---CCc
Q psy11600 167 PVDVIAEYIESADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYP----TLNIEVDGGVGPNTIDECAKCLTGF---GGQ 239 (277)
Q Consensus 167 ~~~~i~~~i~~~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~~----~~~i~vdGgV~~~tv~~~~~~gpg~---ggq 239 (277)
|++.+.++++.+|++++|+++|||+||+|++..++|+++++++.. ++.+++||||+.+|++.+.++|++. |+.
T Consensus 118 p~~~i~~~l~~~D~vlvMtV~PGfgGq~fi~~~lekI~~l~~~~~~~~~~~~I~vdGGI~~eni~~l~~aGAd~vVvGSa 197 (220)
T PRK08883 118 PLHHLEYIMDKVDLILLMSVNPGFGGQSFIPHTLDKLRAVRKMIDESGRDIRLEIDGGVKVDNIREIAEAGADMFVAGSA 197 (220)
T ss_pred CHHHHHHHHHhCCeEEEEEecCCCCCceecHhHHHHHHHHHHHHHhcCCCeeEEEECCCCHHHHHHHHHcCCCEEEEeHH
Confidence 999999999999999999999999999999999999999988754 4789999999999999999999996 778
Q ss_pred ccc-cCHHHHHHHHHhh
Q psy11600 240 KFM-QDMMPKVKWLREN 255 (277)
Q Consensus 240 ~F~-~~~~~kI~~l~~~ 255 (277)
.|. ++..+.++++|+.
T Consensus 198 If~~~d~~~~i~~l~~~ 214 (220)
T PRK08883 198 IFGQPDYKAVIDEMRAE 214 (220)
T ss_pred HhCCCCHHHHHHHHHHH
Confidence 886 4778888888764
No 9
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=100.00 E-value=2.8e-55 Score=383.10 Aligned_cols=193 Identities=44% Similarity=0.820 Sum_probs=172.0
Q ss_pred eEeeeccccCcccHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhc
Q psy11600 7 MIGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADA 86 (277)
Q Consensus 7 ~~~~s~~~~d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~a 86 (277)
+|+|||+|+|+.+|++++++++++|+||+|+|||||+||||++||+++++++|+. |++++|+||||.||.+|++.|.++
T Consensus 1 kI~pSil~ad~~~l~~~i~~l~~~g~d~lHiDiMDg~fvpn~~~g~~~i~~i~~~-~~~~~DvHLMv~~P~~~i~~~~~~ 79 (201)
T PF00834_consen 1 KISPSILSADFLNLEEEIKRLEEAGADWLHIDIMDGHFVPNLTFGPDIIKAIRKI-TDLPLDVHLMVENPERYIEEFAEA 79 (201)
T ss_dssp EEEEBGGGS-GGGHHHHHHHHHHTT-SEEEEEEEBSSSSSSB-B-HHHHHHHHTT-SSSEEEEEEESSSGGGHHHHHHHH
T ss_pred CeehhhhhCCHHHHHHHHHHHHHcCCCEEEEeecccccCCcccCCHHHHHHHhhc-CCCcEEEEeeeccHHHHHHHHHhc
Confidence 6999999999999999999999999999999999999999999999999999985 999999999999999999999999
Q ss_pred CCCeEEEeccCCCCCHHHHHHHHhhCCCcccchhhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCCccceeeCCCC
Q psy11600 87 NVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKT 166 (277)
Q Consensus 87 g~d~i~~H~e~~d~g~~~i~~i~~~~~~~~d~p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~i~p~t 166 (277)
|+++++||+|+.. ++.++++.||+.|+++|++++|+|
T Consensus 80 g~~~i~~H~E~~~-------------------------------------------~~~~~i~~ik~~g~k~GialnP~T 116 (201)
T PF00834_consen 80 GADYITFHAEATE-------------------------------------------DPKETIKYIKEAGIKAGIALNPET 116 (201)
T ss_dssp T-SEEEEEGGGTT-------------------------------------------THHHHHHHHHHTTSEEEEEE-TTS
T ss_pred CCCEEEEcccchh-------------------------------------------CHHHHHHHHHHhCCCEEEEEECCC
Confidence 9999999999876 778899999999999999999999
Q ss_pred CHHhHHHHHhhcCceEEEEecCCCCCchhhhhhhhhHHHHHhhCC----CccEEEeCCCCcCcHHHHHHccCCC---CCc
Q psy11600 167 PVDVIAEYIESADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYP----TLNIEVDGGVGPNTIDECAKCLTGF---GGQ 239 (277)
Q Consensus 167 ~~~~i~~~i~~~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~~----~~~i~vdGgV~~~tv~~~~~~gpg~---ggq 239 (277)
|++.++++++.+|++++|+++||++||+|++++++||++++++.+ ++.|+|||||+.+|+++|.++|++. |+.
T Consensus 117 ~~~~~~~~l~~vD~VlvMsV~PG~~Gq~f~~~~~~KI~~l~~~~~~~~~~~~I~vDGGI~~~~~~~~~~aGad~~V~Gs~ 196 (201)
T PF00834_consen 117 PVEELEPYLDQVDMVLVMSVEPGFGGQKFIPEVLEKIRELRKLIPENGLDFEIEVDGGINEENIKQLVEAGADIFVAGSA 196 (201)
T ss_dssp -GGGGTTTGCCSSEEEEESS-TTTSSB--HGGHHHHHHHHHHHHHHHTCGSEEEEESSESTTTHHHHHHHT--EEEESHH
T ss_pred CchHHHHHhhhcCEEEEEEecCCCCcccccHHHHHHHHHHHHHHHhcCCceEEEEECCCCHHHHHHHHHcCCCEEEECHH
Confidence 999999999999999999999999999999999999999988654 5999999999999999999999996 666
Q ss_pred cccc
Q psy11600 240 KFMQ 243 (277)
Q Consensus 240 ~F~~ 243 (277)
.|..
T Consensus 197 iF~~ 200 (201)
T PF00834_consen 197 IFKA 200 (201)
T ss_dssp HHTS
T ss_pred HhCC
Confidence 6654
No 10
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=100.00 E-value=5.3e-48 Score=343.73 Aligned_cols=209 Identities=53% Similarity=0.944 Sum_probs=195.3
Q ss_pred CCCceEeeeccccCcccHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHH
Q psy11600 3 HVQCMIGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEP 82 (277)
Q Consensus 3 ~~~~~~~~s~~~~d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~ 82 (277)
|++.+|+|||+|+|+.+|+++++++++.|+|++|+|||||+||||++||++++++||+..|++++|+|||+.+|+++++.
T Consensus 4 ~~~~~i~pSi~~~d~~~l~~~~~~l~~~~~~~~H~DimDg~fvpn~~~G~~~v~~lr~~~~~~~lDvHLm~~~p~~~i~~ 83 (228)
T PTZ00170 4 PLKAIIAPSILAADFSKLADEAQDVLSGGADWLHVDVMDGHFVPNLSFGPPVVKSLRKHLPNTFLDCHLMVSNPEKWVDD 83 (228)
T ss_pred CCCCEEehhHhhcCHHHHHHHHHHHHHcCCCEEEEecccCccCCCcCcCHHHHHHHHhcCCCCCEEEEECCCCHHHHHHH
Confidence 68889999999999999999999999999999999999999999999999999999987569999999999999999999
Q ss_pred HHhcCCCeEEEeccCCCCCHHHHHHHHhhCCCcccchhhhhHHHHhcCCCeEEeecCCCCC-hHHHHHHHHHhCCcccee
Q psy11600 83 MADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPMADANVDQYTFHVEPVDN-VPQVIRQIKEAGMKVGLA 161 (277)
Q Consensus 83 l~~ag~d~i~~H~e~~d~g~~~i~~i~~~~~~~~d~p~~~i~~~~~~g~d~it~H~E~~~~-~~~~~~~I~~~g~~~g~~ 161 (277)
+.++|+|++|||+|+.. . +.+.++.+++.|++.|++
T Consensus 84 ~~~~Gad~itvH~ea~~-------------------------------------------~~~~~~l~~ik~~G~~~gva 120 (228)
T PTZ00170 84 FAKAGASQFTFHIEATE-------------------------------------------DDPKAVARKIREAGMKVGVA 120 (228)
T ss_pred HHHcCCCEEEEeccCCc-------------------------------------------hHHHHHHHHHHHCCCeEEEE
Confidence 99999999999999865 4 667889999999999999
Q ss_pred eCCCCCHHhHHHHH--hhcCceEEEEecCCCCCchhhhhhhhhHHHHHhhCCCccEEEeCCCCcCcHHHHHHccCCC---
Q psy11600 162 IKPKTPVDVIAEYI--ESADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKCLTGF--- 236 (277)
Q Consensus 162 i~p~t~~~~i~~~i--~~~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~~~~~i~vdGgV~~~tv~~~~~~gpg~--- 236 (277)
++|.|+++.+.+++ ..+|.+++|+++||+.||.|.++.++++++++++.+++.++|||||+.+|+..+.++|+++
T Consensus 121 l~p~t~~e~l~~~l~~~~vD~Vl~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~I~VdGGI~~~ti~~~~~aGad~iVv 200 (228)
T PTZ00170 121 IKPKTPVEVLFPLIDTDLVDMVLVMTVEPGFGGQSFMHDMMPKVRELRKRYPHLNIQVDGGINLETIDIAADAGANVIVA 200 (228)
T ss_pred ECCCCCHHHHHHHHccchhhhHHhhhcccCCCCcEecHHHHHHHHHHHHhcccCeEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 99999999999999 8899999999999999999999999999999999888999999999999999999999996
Q ss_pred CCcccc-cCHHHHHHHHHh
Q psy11600 237 GGQKFM-QDMMPKVKWLRE 254 (277)
Q Consensus 237 ggq~F~-~~~~~kI~~l~~ 254 (277)
|+..|. ++..+.++++++
T Consensus 201 GsaI~~a~d~~~~~~~i~~ 219 (228)
T PTZ00170 201 GSSIFKAKDRKQAIELLRE 219 (228)
T ss_pred chHHhCCCCHHHHHHHHHH
Confidence 888886 466666666664
No 11
>PLN02334 ribulose-phosphate 3-epimerase
Probab=100.00 E-value=9.2e-37 Score=271.48 Aligned_cols=210 Identities=48% Similarity=0.844 Sum_probs=192.3
Q ss_pred CCCCceEeeeccccCcccHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHH
Q psy11600 2 SHVQCMIGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIE 81 (277)
Q Consensus 2 ~~~~~~~~~s~~~~d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~ 81 (277)
|.-+..|+||++|+|+.++.++++++++.|++++|+|+|||+|+||++||++.++++|+. |+.++++|||+.||.++++
T Consensus 4 ~~~~~~i~~s~~~~~~~~l~~~l~~~~~~g~~~ihld~~d~~f~~~~~~g~~~~~~l~~~-~~~~~~vhlmv~~p~d~~~ 82 (229)
T PLN02334 4 SKNDAIIAPSILSADFANLAEEAKRVLDAGADWLHVDVMDGHFVPNLTIGPPVVKALRKH-TDAPLDCHLMVTNPEDYVP 82 (229)
T ss_pred ccCCceEEeehhhcCHHHHHHHHHHHHHcCCCEEEEecccCCcCCccccCHHHHHHHHhc-CCCcEEEEeccCCHHHHHH
Confidence 334456999999999999999999999999999999999999999999999999999985 9999999999999999999
Q ss_pred HHHhcCCCeEEEecc--CCCCCHHHHHHHHhhCCCcccchhhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCCccc
Q psy11600 82 PMADANVDQYTFHVE--PVDNVPQVIRQIKEAGMKVGQVLQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVG 159 (277)
Q Consensus 82 ~l~~ag~d~i~~H~e--~~d~g~~~i~~i~~~~~~~~d~p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~~g 159 (277)
.+.++|+|++|||++ ..+ .+...++.++..|++.|
T Consensus 83 ~~~~~gad~v~vH~~q~~~d-------------------------------------------~~~~~~~~i~~~g~~iG 119 (229)
T PLN02334 83 DFAKAGASIFTFHIEQASTI-------------------------------------------HLHRLIQQIKSAGMKAG 119 (229)
T ss_pred HHHHcCCCEEEEeeccccch-------------------------------------------hHHHHHHHHHHCCCeEE
Confidence 999999999999999 345 56678888999999999
Q ss_pred eeeCCCCCHHhHHHHHhh--cCceEEEEecCCCCCchhhhhhhhhHHHHHhhCCCccEEEeCCCCcCcHHHHHHccCCC-
Q psy11600 160 LAIKPKTPVDVIAEYIES--ADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKCLTGF- 236 (277)
Q Consensus 160 ~~i~p~t~~~~i~~~i~~--~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~~~~~i~vdGgV~~~tv~~~~~~gpg~- 236 (277)
+.++|.|+.+.+.+++.. +|++++|+++||+++|+|.+..+++++++++..++..+++||||+.+|+.++.++|++.
T Consensus 120 ls~~~~t~~~~~~~~~~~~~~Dyi~~~~v~pg~~~~~~~~~~~~~i~~~~~~~~~~~I~a~GGI~~e~i~~l~~aGad~v 199 (229)
T PLN02334 120 VVLNPGTPVEAVEPVVEKGLVDMVLVMSVEPGFGGQSFIPSMMDKVRALRKKYPELDIEVDGGVGPSTIDKAAEAGANVI 199 (229)
T ss_pred EEECCCCCHHHHHHHHhccCCCEEEEEEEecCCCccccCHHHHHHHHHHHHhCCCCcEEEeCCCCHHHHHHHHHcCCCEE
Confidence 999999999999999999 99999999999999999999999999999988788899999999999999999999996
Q ss_pred --CCcccc-cCHHHHHHHHHhh
Q psy11600 237 --GGQKFM-QDMMPKVKWLREN 255 (277)
Q Consensus 237 --ggq~F~-~~~~~kI~~l~~~ 255 (277)
|+..|. ++..+.++++++.
T Consensus 200 vvgsai~~~~d~~~~~~~l~~~ 221 (229)
T PLN02334 200 VAGSAVFGAPDYAEVISGLRAS 221 (229)
T ss_pred EEChHHhCCCCHHHHHHHHHHH
Confidence 788886 4677777777753
No 12
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=5.1e-35 Score=255.26 Aligned_cols=164 Identities=24% Similarity=0.397 Sum_probs=142.3
Q ss_pred CeeeeeeeccC---cHHhHHHHHhcCCCeEEEeccCCCC--------CHHHHHHHHhhCCCcccc------hhhhhHHHH
Q psy11600 65 AFFETHMMVQN---PQQWIEPMADANVDQYTFHVEPVDN--------VPQVIRQIKEAGMKVGQV------LQDWIEPMA 127 (277)
Q Consensus 65 ~~~d~Hlmv~~---p~~~i~~l~~ag~d~i~~H~e~~d~--------g~~~i~~i~~~~~~~~d~------p~~~i~~~~ 127 (277)
..+...++.+| ++++++.+.++|+||+ |+|+||| ||.+++++|+.|+.++|+ |++|+++|+
T Consensus 4 ~~iapSILsaD~~~l~~el~~~~~agad~i--H~DVMDghFVPNiTfGp~~v~~l~~~t~~p~DvHLMV~~p~~~i~~fa 81 (220)
T COG0036 4 MKIAPSILSADFARLGEELKALEAAGADLI--HIDVMDGHFVPNITFGPPVVKALRKITDLPLDVHLMVENPDRYIEAFA 81 (220)
T ss_pred ceeeeehhhCCHhHHHHHHHHHHHcCCCEE--EEeccCCCcCCCcccCHHHHHHHhhcCCCceEEEEecCCHHHHHHHHH
Confidence 45667777776 5667999999999999 9999997 999999999999887765 999999999
Q ss_pred hcCCCeEEeecCCCCChHHHHHHHHHhCCccceeeCCCCCHHhHHHHHhhcCceEEEEecCCCCCchhhhhhhhhHHHHH
Q psy11600 128 DANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIMTVEPGFGGQKFMQDMMPKVKWLR 207 (277)
Q Consensus 128 ~~g~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~i~p~t~~~~i~~~i~~~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~ 207 (277)
++|||+||||+| +..++.++|++ |++.++..++++||+|| ++.+.
T Consensus 82 ~agad~It~H~E---~~~~~~r~i~~---------------------Ik~~G~kaGv~lnP~Tp-----------~~~i~ 126 (220)
T COG0036 82 KAGADIITFHAE---ATEHIHRTIQL---------------------IKELGVKAGLVLNPATP-----------LEALE 126 (220)
T ss_pred HhCCCEEEEEec---cCcCHHHHHHH---------------------HHHcCCeEEEEECCCCC-----------HHHHH
Confidence 999999999999 99999998876 45556666689999998 56667
Q ss_pred hhCCCccEEEeCCCCcCcHHHHHHccCCCCCcccccCHHHHHHHHHhhCC---CCeEEEeCCCCccCHHHhh
Q psy11600 208 ENYPTLNIEVDGGVGPNTIDECAKCLTGFGGQKFMQDMMPKVKWLRENYP---TLNIEVDGGVGPNTIDECA 276 (277)
Q Consensus 208 ~~~~~~~i~vdGgV~~~tv~~~~~~gpg~ggq~F~~~~~~kI~~l~~~~~---~~~I~VDGGI~~~~~~~~~ 276 (277)
.+++.+|+++. ||+ +||||||+|++++++||+++|++.. ++.||||||||.+|+++++
T Consensus 127 ~~l~~vD~Vll-----MsV------nPGfgGQ~Fi~~~l~Ki~~lr~~~~~~~~~~IeVDGGI~~~t~~~~~ 187 (220)
T COG0036 127 PVLDDVDLVLL-----MSV------NPGFGGQKFIPEVLEKIRELRAMIDERLDILIEVDGGINLETIKQLA 187 (220)
T ss_pred HHHhhCCEEEE-----EeE------CCCCcccccCHHHHHHHHHHHHHhcccCCeEEEEeCCcCHHHHHHHH
Confidence 77778888864 554 4999999999999999999999766 6889999999999999886
No 13
>KOG3111|consensus
Probab=100.00 E-value=3.1e-34 Score=243.33 Aligned_cols=156 Identities=37% Similarity=0.635 Sum_probs=136.8
Q ss_pred cCcHHhHHHHHhcCCCeEEEeccCCCC--------CHHHHHHHHhhCCC--cccc------hhhhhHHHHhcCCCeEEee
Q psy11600 74 QNPQQWIEPMADANVDQYTFHVEPVDN--------VPQVIRQIKEAGMK--VGQV------LQDWIEPMADANVDQYTFH 137 (277)
Q Consensus 74 ~~p~~~i~~l~~ag~d~i~~H~e~~d~--------g~~~i~~i~~~~~~--~~d~------p~~~i~~~~~~g~d~it~H 137 (277)
.|++++..++.++|+||+ |+|+||| ||.+|+++|+++.. .+|+ |++|+++|+++||+.+|||
T Consensus 17 anL~~e~~~~l~~Gadwl--HlDVMDg~FVpNiT~G~pvV~slR~~~~~~~ffD~HmMV~~Peq~V~~~a~agas~~tfH 94 (224)
T KOG3111|consen 17 ANLAAECKKMLDAGADWL--HLDVMDGHFVPNITFGPPVVESLRKHTGADPFFDVHMMVENPEQWVDQMAKAGASLFTFH 94 (224)
T ss_pred HHHHHHHHHHHHcCCCeE--EEeeecccccCCcccchHHHHHHHhccCCCcceeEEEeecCHHHHHHHHHhcCcceEEEE
Confidence 468888999999999999 9999997 99999999999755 3554 9999999999999999999
Q ss_pred cCCCCChHHHHHHHHHhCCccceeeCCCCCHHhHHHHHhhcCceEEEEecCCCCCchhhhhhhhhHHHHHhhCCCccEEE
Q psy11600 138 VEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEV 217 (277)
Q Consensus 138 ~E~~~~~~~~~~~I~~~g~~~g~~i~p~t~~~~i~~~i~~~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~~~~~i~v 217 (277)
+| .++...++++ +++..+++.+++++|||+ ++.+.++...+|+++
T Consensus 95 ~E---~~q~~~~lv~---------------------~ir~~Gmk~G~alkPgT~-----------Ve~~~~~~~~~D~vL 139 (224)
T KOG3111|consen 95 YE---ATQKPAELVE---------------------KIREKGMKVGLALKPGTP-----------VEDLEPLAEHVDMVL 139 (224)
T ss_pred Ee---eccCHHHHHH---------------------HHHHcCCeeeEEeCCCCc-----------HHHHHHhhccccEEE
Confidence 99 8887666665 456677777799999998 667777777888886
Q ss_pred eCCCCcCcHHHHHHccCCCCCcccccCHHHHHHHHHhhCCCCeEEEeCCCCccCHHHhhC
Q psy11600 218 DGGVGPNTIDECAKCLTGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAK 277 (277)
Q Consensus 218 dGgV~~~tv~~~~~~gpg~ggq~F~~~~~~kI~~l~~~~~~~~I~VDGGI~~~~~~~~~~ 277 (277)
+||+ +||||||+|++++++||++||+++|++.||||||++++|+.++++
T Consensus 140 -----vMtV------ePGFGGQkFme~mm~KV~~lR~kyp~l~ievDGGv~~~ti~~~a~ 188 (224)
T KOG3111|consen 140 -----VMTV------EPGFGGQKFMEDMMPKVEWLREKYPNLDIEVDGGVGPSTIDKAAE 188 (224)
T ss_pred -----EEEe------cCCCchhhhHHHHHHHHHHHHHhCCCceEEecCCcCcchHHHHHH
Confidence 6776 599999999999999999999999999999999999999988763
No 14
>PRK08005 epimerase; Validated
Probab=100.00 E-value=9.2e-33 Score=242.30 Aligned_cols=163 Identities=18% Similarity=0.208 Sum_probs=139.0
Q ss_pred eeeeeeccCc---HHhHHHHHhcCCCeEEEeccCCCC--------CHHHHHHHHhhCCCcccc------hhhhhHHHHhc
Q psy11600 67 FETHMMVQNP---QQWIEPMADANVDQYTFHVEPVDN--------VPQVIRQIKEAGMKVGQV------LQDWIEPMADA 129 (277)
Q Consensus 67 ~d~Hlmv~~p---~~~i~~l~~ag~d~i~~H~e~~d~--------g~~~i~~i~~~~~~~~d~------p~~~i~~~~~~ 129 (277)
+...+|..|+ +++++++.++|+|++ |+|+||| ||++++++|+.|..++|+ |++|++.|+++
T Consensus 3 i~pSil~ad~~~l~~el~~l~~~g~d~l--HiDvMDG~FVPN~tfG~~~i~~l~~~t~~~~DvHLMv~~P~~~i~~~~~~ 80 (210)
T PRK08005 3 LHPSLASADPLRYAEALTALHDAPLGSL--HLDIEDTSFINNITFGMKTIQAVAQQTRHPLSFHLMVSSPQRWLPWLAAI 80 (210)
T ss_pred EEeehhhCCHHHHHHHHHHHHHCCCCEE--EEeccCCCcCCccccCHHHHHHHHhcCCCCeEEEeccCCHHHHHHHHHHh
Confidence 4566777764 557999999999999 9999997 999999999999877665 99999999999
Q ss_pred CCCeEEeecCCCCChHHHHHHHHHhCCccceeeCCCCCHHhHHHHHhhcCceEEEEecCCCCCchhhhhhhhhHHHHHhh
Q psy11600 130 NVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIMTVEPGFGGQKFMQDMMPKVKWLREN 209 (277)
Q Consensus 130 g~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~i~p~t~~~~i~~~i~~~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~ 209 (277)
|||+||||+| +..++.+.|++ |++.++..++++||+|+ ++.+.++
T Consensus 81 gad~It~H~E---a~~~~~~~l~~---------------------Ik~~G~k~GlAlnP~Tp-----------~~~i~~~ 125 (210)
T PRK08005 81 RPGWIFIHAE---SVQNPSEILAD---------------------IRAIGAKAGLALNPATP-----------LLPYRYL 125 (210)
T ss_pred CCCEEEEccc---CccCHHHHHHH---------------------HHHcCCcEEEEECCCCC-----------HHHHHHH
Confidence 9999999999 98887777765 45666667789999998 5566666
Q ss_pred CCCccEEEeCCCCcCcHHHHHHccCCCCCcccccCHHHHHHHHHhhCCCCeEEEeCCCCccCHHHhhC
Q psy11600 210 YPTLNIEVDGGVGPNTIDECAKCLTGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAK 277 (277)
Q Consensus 210 ~~~~~i~vdGgV~~~tv~~~~~~gpg~ggq~F~~~~~~kI~~l~~~~~~~~I~VDGGI~~~~~~~~~~ 277 (277)
.+.+|..+ +||+ +||||||.|++++++||+++|+++++.+||||||||.+|++++++
T Consensus 126 l~~vD~Vl-----vMsV------~PGf~GQ~f~~~~~~KI~~l~~~~~~~~I~VDGGI~~~~i~~l~~ 182 (210)
T PRK08005 126 ALQLDALM-----IMTS------EPDGRGQQFIAAMCEKVSQSREHFPAAECWADGGITLRAARLLAA 182 (210)
T ss_pred HHhcCEEE-----EEEe------cCCCccceecHHHHHHHHHHHHhcccCCEEEECCCCHHHHHHHHH
Confidence 66778776 5555 599999999999999999999988777899999999999998863
No 15
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=99.97 E-value=1e-31 Score=237.99 Aligned_cols=165 Identities=24% Similarity=0.366 Sum_probs=138.8
Q ss_pred CeeeeeeeccC---cHHhHHHHHhcCCCeEEEeccCCCC--------CHHHHHHHHhh-CCCcccc------hhhhhHHH
Q psy11600 65 AFFETHMMVQN---PQQWIEPMADANVDQYTFHVEPVDN--------VPQVIRQIKEA-GMKVGQV------LQDWIEPM 126 (277)
Q Consensus 65 ~~~d~Hlmv~~---p~~~i~~l~~ag~d~i~~H~e~~d~--------g~~~i~~i~~~-~~~~~d~------p~~~i~~~ 126 (277)
+.+...+|..| ++++++++.++|+||+ |+|+||| ||++++++|+. ++.++|+ |++|++.|
T Consensus 4 ~~i~pSil~ad~~~l~~~i~~l~~~g~d~l--HiDimDG~FVPN~tfg~~~i~~lr~~~~~~~~dvHLMv~~P~~~i~~~ 81 (223)
T PRK08745 4 TAIAPSILSADFARLGEEVDNVLKAGADWV--HFDVMDNHYVPNLTIGPMVCQALRKHGITAPIDVHLMVEPVDRIVPDF 81 (223)
T ss_pred cEEEeehhhcCHHHHHHHHHHHHHcCCCEE--EEecccCccCCCcccCHHHHHHHHhhCCCCCEEEEeccCCHHHHHHHH
Confidence 34677788886 4557999999999999 9999998 99999999998 6777654 99999999
Q ss_pred HhcCCCeEEeecCCCCChHHHHHHHHHhCCccceeeCCCCCHHhHHHHHhhcCceEEEEecCCCCCchhhhhhhhhHHHH
Q psy11600 127 ADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIMTVEPGFGGQKFMQDMMPKVKWL 206 (277)
Q Consensus 127 ~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~i~p~t~~~~i~~~i~~~d~vl~mav~Pgt~gq~~~~~~l~kI~~l 206 (277)
+++|||+||||+| +..++.+.++. |++.++..++++||+|+ ++.+
T Consensus 82 ~~~gad~I~~H~E---a~~~~~~~l~~---------------------Ir~~g~k~GlalnP~T~-----------~~~i 126 (223)
T PRK08745 82 ADAGATTISFHPE---ASRHVHRTIQL---------------------IKSHGCQAGLVLNPATP-----------VDIL 126 (223)
T ss_pred HHhCCCEEEEccc---CcccHHHHHHH---------------------HHHCCCceeEEeCCCCC-----------HHHH
Confidence 9999999999999 98887777765 45556666689999998 5666
Q ss_pred HhhCCCccEEEeCCCCcCcHHHHHHccCCCCCcccccCHHHHHHHHHhh----CCCCeEEEeCCCCccCHHHhhC
Q psy11600 207 RENYPTLNIEVDGGVGPNTIDECAKCLTGFGGQKFMQDMMPKVKWLREN----YPTLNIEVDGGVGPNTIDECAK 277 (277)
Q Consensus 207 ~~~~~~~~i~vdGgV~~~tv~~~~~~gpg~ggq~F~~~~~~kI~~l~~~----~~~~~I~VDGGI~~~~~~~~~~ 277 (277)
.++++.+|.++ +||+ +||||||.|++++++||+++|++ .+++.|+||||||.+|++++++
T Consensus 127 ~~~l~~vD~Vl-----vMtV------~PGf~GQ~fi~~~l~KI~~l~~~~~~~~~~~~IeVDGGI~~eti~~l~~ 190 (223)
T PRK08745 127 DWVLPELDLVL-----VMSV------NPGFGGQAFIPSALDKLRAIRKKIDALGKPIRLEIDGGVKADNIGAIAA 190 (223)
T ss_pred HHHHhhcCEEE-----EEEE------CCCCCCccccHHHHHHHHHHHHHHHhcCCCeeEEEECCCCHHHHHHHHH
Confidence 66677788876 5555 59999999999999999999986 3457899999999999998863
No 16
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=99.97 E-value=3.6e-31 Score=234.49 Aligned_cols=164 Identities=12% Similarity=0.115 Sum_probs=137.2
Q ss_pred CCeeeeeeeccCcH---HhHHHHHhcCCCeEEEeccCCCC--------CHHHHHHHHhhCCCccc---c---hhhhhHHH
Q psy11600 64 KAFFETHMMVQNPQ---QWIEPMADANVDQYTFHVEPVDN--------VPQVIRQIKEAGMKVGQ---V---LQDWIEPM 126 (277)
Q Consensus 64 ~~~~d~Hlmv~~p~---~~i~~l~~ag~d~i~~H~e~~d~--------g~~~i~~i~~~~~~~~d---~---p~~~i~~~ 126 (277)
...+...++..|+. ++++++.++|+||+ |+|+||| ||++|+++|+ +.++| | |++|++.|
T Consensus 12 ~~~I~pSil~ad~~~l~~el~~l~~~g~d~l--HiDVMDG~FVPNitfGp~~i~~i~~--~~~~DvHLMv~~P~~~i~~~ 87 (228)
T PRK08091 12 QQPISVGILASNWLKFNETLTTLSENQLRLL--HFDIADGQFSPFFTVGAIAIKQFPT--HCFKDVHLMVRDQFEVAKAC 87 (228)
T ss_pred CCeEEeehhhcCHHHHHHHHHHHHHCCCCEE--EEeccCCCcCCccccCHHHHHHhCC--CCCEEEEeccCCHHHHHHHH
Confidence 35789999999754 57999999999999 9999998 9999999985 44444 3 99999999
Q ss_pred HhcCCCeEEeecCCCCChHHHHHHHHHhCCccceeeCCCCCHHhHHHHHhhcCc--eEEEEecCCCCCchhhhhhhhhHH
Q psy11600 127 ADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADL--VLIMTVEPGFGGQKFMQDMMPKVK 204 (277)
Q Consensus 127 ~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~i~p~t~~~~i~~~i~~~d~--vl~mav~Pgt~gq~~~~~~l~kI~ 204 (277)
+++|||+||||+| +..++.+.|++ |++.++ ..++++||+|+ ++
T Consensus 88 ~~aGad~It~H~E---a~~~~~~~l~~---------------------Ik~~g~~~kaGlalnP~Tp-----------~~ 132 (228)
T PRK08091 88 VAAGADIVTLQVE---QTHDLALTIEW---------------------LAKQKTTVLIGLCLCPETP-----------IS 132 (228)
T ss_pred HHhCCCEEEEccc---CcccHHHHHHH---------------------HHHCCCCceEEEEECCCCC-----------HH
Confidence 9999999999999 98887777765 455555 66789999998 56
Q ss_pred HHHhhCCCccEEEeCCCCcCcHHHHHHccCCCCCcccccCHHHHHHHHHhhC----CCCeEEEeCCCCccCHHHhhC
Q psy11600 205 WLRENYPTLNIEVDGGVGPNTIDECAKCLTGFGGQKFMQDMMPKVKWLRENY----PTLNIEVDGGVGPNTIDECAK 277 (277)
Q Consensus 205 ~l~~~~~~~~i~vdGgV~~~tv~~~~~~gpg~ggq~F~~~~~~kI~~l~~~~----~~~~I~VDGGI~~~~~~~~~~ 277 (277)
.+.++++.+|..+ +||+ +||||||.|++++++||+++|+++ +++.|+||||||.+|++++++
T Consensus 133 ~i~~~l~~vD~VL-----iMtV------~PGfgGQ~f~~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~~~ti~~l~~ 198 (228)
T PRK08091 133 LLEPYLDQIDLIQ-----ILTL------DPRTGTKAPSDLILDRVIQVENRLGNRRVEKLISIDGSMTLELASYLKQ 198 (228)
T ss_pred HHHHHHhhcCEEE-----EEEE------CCCCCCccccHHHHHHHHHHHHHHHhcCCCceEEEECCCCHHHHHHHHH
Confidence 6666677788876 5555 599999999999999999999753 457899999999999998863
No 17
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=99.97 E-value=1.1e-31 Score=234.62 Aligned_cols=162 Identities=26% Similarity=0.429 Sum_probs=130.4
Q ss_pred eeeeeeccC---cHHhHHHHHhcCCCeEEEeccCCCC--------CHHHHHHHHhhCCCcccc------hhhhhHHHHhc
Q psy11600 67 FETHMMVQN---PQQWIEPMADANVDQYTFHVEPVDN--------VPQVIRQIKEAGMKVGQV------LQDWIEPMADA 129 (277)
Q Consensus 67 ~d~Hlmv~~---p~~~i~~l~~ag~d~i~~H~e~~d~--------g~~~i~~i~~~~~~~~d~------p~~~i~~~~~~ 129 (277)
+...+|..| ++++++++.++|+||+ |+|+||| ||++++++|+.+..++|+ |++|++.|+++
T Consensus 2 I~pSil~ad~~~l~~~i~~l~~~g~d~l--HiDiMDg~fvpn~~~g~~~i~~i~~~~~~~~DvHLMv~~P~~~i~~~~~~ 79 (201)
T PF00834_consen 2 ISPSILSADFLNLEEEIKRLEEAGADWL--HIDIMDGHFVPNLTFGPDIIKAIRKITDLPLDVHLMVENPERYIEEFAEA 79 (201)
T ss_dssp EEEBGGGS-GGGHHHHHHHHHHTT-SEE--EEEEEBSSSSSSB-B-HHHHHHHHTTSSSEEEEEEESSSGGGHHHHHHHH
T ss_pred eehhhhhCCHHHHHHHHHHHHHcCCCEE--EEeecccccCCcccCCHHHHHHHhhcCCCcEEEEeeeccHHHHHHHHHhc
Confidence 445566665 5668999999999999 9999997 999999999999887765 99999999999
Q ss_pred CCCeEEeecCCCCChHHHHHHHHHhCCccceeeCCCCCHHhHHHHHhhcCceEEEEecCCCCCchhhhhhhhhHHHHHhh
Q psy11600 130 NVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIMTVEPGFGGQKFMQDMMPKVKWLREN 209 (277)
Q Consensus 130 g~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~i~p~t~~~~i~~~i~~~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~ 209 (277)
|+++||||+| +..++.+++++ +++.++..++++||+|+ ++.+.++
T Consensus 80 g~~~i~~H~E---~~~~~~~~i~~---------------------ik~~g~k~GialnP~T~-----------~~~~~~~ 124 (201)
T PF00834_consen 80 GADYITFHAE---ATEDPKETIKY---------------------IKEAGIKAGIALNPETP-----------VEELEPY 124 (201)
T ss_dssp T-SEEEEEGG---GTTTHHHHHHH---------------------HHHTTSEEEEEE-TTS------------GGGGTTT
T ss_pred CCCEEEEccc---chhCHHHHHHH---------------------HHHhCCCEEEEEECCCC-----------chHHHHH
Confidence 9999999999 98888877764 56677788899999998 4455566
Q ss_pred CCCccEEEeCCCCcCcHHHHHHccCCCCCcccccCHHHHHHHHHhhC----CCCeEEEeCCCCccCHHHhh
Q psy11600 210 YPTLNIEVDGGVGPNTIDECAKCLTGFGGQKFMQDMMPKVKWLRENY----PTLNIEVDGGVGPNTIDECA 276 (277)
Q Consensus 210 ~~~~~i~vdGgV~~~tv~~~~~~gpg~ggq~F~~~~~~kI~~l~~~~----~~~~I~VDGGI~~~~~~~~~ 276 (277)
.+.+|.++ +||+ +||||||.|++++++||+++|++. +++.|+||||||.+|+++++
T Consensus 125 l~~vD~Vl-----vMsV------~PG~~Gq~f~~~~~~KI~~l~~~~~~~~~~~~I~vDGGI~~~~~~~~~ 184 (201)
T PF00834_consen 125 LDQVDMVL-----VMSV------EPGFGGQKFIPEVLEKIRELRKLIPENGLDFEIEVDGGINEENIKQLV 184 (201)
T ss_dssp GCCSSEEE-----EESS-------TTTSSB--HGGHHHHHHHHHHHHHHHTCGSEEEEESSESTTTHHHHH
T ss_pred hhhcCEEE-----EEEe------cCCCCcccccHHHHHHHHHHHHHHHhcCCceEEEEECCCCHHHHHHHH
Confidence 67788876 4554 499999999999999999999754 46999999999999999886
No 18
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=99.97 E-value=4.8e-31 Score=234.26 Aligned_cols=163 Identities=28% Similarity=0.386 Sum_probs=136.2
Q ss_pred CeeeeeeeccC---cHHhHHHHHhcCCCeEEEeccCCCC--------CHHHHHHHHhhCCCcccc------hhhhhHHHH
Q psy11600 65 AFFETHMMVQN---PQQWIEPMADANVDQYTFHVEPVDN--------VPQVIRQIKEAGMKVGQV------LQDWIEPMA 127 (277)
Q Consensus 65 ~~~d~Hlmv~~---p~~~i~~l~~ag~d~i~~H~e~~d~--------g~~~i~~i~~~~~~~~d~------p~~~i~~~~ 127 (277)
..+...++..| ++++++.+.+ |+||+ |+|+||| ||++++++|+.|..++|+ |++|++.|+
T Consensus 3 ~~I~pSil~ad~~~l~~el~~l~~-g~d~l--H~DiMDG~FVPN~tfg~~~i~~ir~~t~~~~DvHLMv~~P~~~i~~~~ 79 (229)
T PRK09722 3 MKISPSLMCMDLLKFKEQIEFLNS-KADYF--HIDIMDGHFVPNLTLSPFFVSQVKKLASKPLDVHLMVTDPQDYIDQLA 79 (229)
T ss_pred ceEEeehhhcCHHHHHHHHHHHHh-CCCEE--EEecccCccCCCcccCHHHHHHHHhcCCCCeEEEEEecCHHHHHHHHH
Confidence 34677788886 4557888877 99999 9999998 999999999998877665 999999999
Q ss_pred hcCCCeEEeecCCCCCh-HHHHHHHHHhCCccceeeCCCCCHHhHHHHHhhcCceEEEEecCCCCCchhhhhhhhhHHHH
Q psy11600 128 DANVDQYTFHVEPVDNV-PQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIMTVEPGFGGQKFMQDMMPKVKWL 206 (277)
Q Consensus 128 ~~g~d~it~H~E~~~~~-~~~~~~I~~~g~~~g~~i~p~t~~~~i~~~i~~~d~vl~mav~Pgt~gq~~~~~~l~kI~~l 206 (277)
++|||+||||+| +. .++.+.|+. |++.++..++++||+|+ ++.+
T Consensus 80 ~aGad~it~H~E---a~~~~~~~~i~~---------------------Ik~~G~kaGlalnP~T~-----------~~~l 124 (229)
T PRK09722 80 DAGADFITLHPE---TINGQAFRLIDE---------------------IRRAGMKVGLVLNPETP-----------VESI 124 (229)
T ss_pred HcCCCEEEECcc---CCcchHHHHHHH---------------------HHHcCCCEEEEeCCCCC-----------HHHH
Confidence 999999999999 76 477777764 55666666789999998 5666
Q ss_pred HhhCCCccEEEeCCCCcCcHHHHHHccCCCCCcccccCHHHHHHHHHhhC----CCCeEEEeCCCCccCHHHhh
Q psy11600 207 RENYPTLNIEVDGGVGPNTIDECAKCLTGFGGQKFMQDMMPKVKWLRENY----PTLNIEVDGGVGPNTIDECA 276 (277)
Q Consensus 207 ~~~~~~~~i~vdGgV~~~tv~~~~~~gpg~ggq~F~~~~~~kI~~l~~~~----~~~~I~VDGGI~~~~~~~~~ 276 (277)
.++++.+|.++ +||+ +||||||.|++++++||+++|++. .++.||||||||.+|+++++
T Consensus 125 ~~~l~~vD~VL-----vMsV------~PGf~GQ~fi~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~~~~i~~~~ 187 (229)
T PRK09722 125 KYYIHLLDKIT-----VMTV------DPGFAGQPFIPEMLDKIAELKALRERNGLEYLIEVDGSCNQKTYEKLM 187 (229)
T ss_pred HHHHHhcCEEE-----EEEE------cCCCcchhccHHHHHHHHHHHHHHHhcCCCeEEEEECCCCHHHHHHHH
Confidence 66777788876 4554 499999999999999999999753 35789999999999999875
No 19
>PRK14057 epimerase; Provisional
Probab=99.97 E-value=5.3e-31 Score=236.13 Aligned_cols=174 Identities=10% Similarity=0.100 Sum_probs=140.4
Q ss_pred CCCeeeeeeeccCc---HHhHHHHHhcCCCeEEEeccCCCC--------CHHHHHHHHhhCCCcccc------hhhhhHH
Q psy11600 63 PKAFFETHMMVQNP---QQWIEPMADANVDQYTFHVEPVDN--------VPQVIRQIKEAGMKVGQV------LQDWIEP 125 (277)
Q Consensus 63 ~~~~~d~Hlmv~~p---~~~i~~l~~ag~d~i~~H~e~~d~--------g~~~i~~i~~~~~~~~d~------p~~~i~~ 125 (277)
...++...+|..|+ +++++++.++|+||+ |+|+||| ||++++++|+ +.++|+ |++|++.
T Consensus 18 ~~~~IspSil~aD~~~L~~el~~l~~~g~d~l--HiDVMDG~FVPNitfGp~~i~~i~~--~~p~DvHLMV~~P~~~i~~ 93 (254)
T PRK14057 18 ASYPLSVGILAGQWIALHRYLQQLEALNQPLL--HLDLMDGQFCPQFTVGPWAVGQLPQ--TFIKDVHLMVADQWTAAQA 93 (254)
T ss_pred cCCceEeehhhcCHHHHHHHHHHHHHCCCCEE--EEeccCCccCCccccCHHHHHHhcc--CCCeeEEeeeCCHHHHHHH
Confidence 67899999999974 557999999999999 9999998 9999999987 345443 9999999
Q ss_pred HHhcCCCeEEeecCCCCChHHHHHHHHHhCCccceeeCCCCCHHhHHHHHhhcCceEEEEecCCCCCchhhhhhhhhHHH
Q psy11600 126 MADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIMTVEPGFGGQKFMQDMMPKVKW 205 (277)
Q Consensus 126 ~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~i~p~t~~~~i~~~i~~~d~vl~mav~Pgt~gq~~~~~~l~kI~~ 205 (277)
|+++|||+||||+| +..++.+.|+++ +..|++. .-...++..++++||+|+ ++.
T Consensus 94 ~~~aGad~It~H~E---a~~~~~~~l~~I---r~~G~k~---------~~~~~~~kaGlAlnP~Tp-----------~e~ 147 (254)
T PRK14057 94 CVKAGAHCITLQAE---GDIHLHHTLSWL---GQQTVPV---------IGGEMPVIRGISLCPATP-----------LDV 147 (254)
T ss_pred HHHhCCCEEEEeec---cccCHHHHHHHH---HHcCCCc---------ccccccceeEEEECCCCC-----------HHH
Confidence 99999999999999 988888888775 2333210 000122467799999998 566
Q ss_pred HHhhCCCccEEEeCCCCcCcHHHHHHccCCCCCcccccCHHHHHHHHHhhC----CCCeEEEeCCCCccCHHHhhC
Q psy11600 206 LRENYPTLNIEVDGGVGPNTIDECAKCLTGFGGQKFMQDMMPKVKWLRENY----PTLNIEVDGGVGPNTIDECAK 277 (277)
Q Consensus 206 l~~~~~~~~i~vdGgV~~~tv~~~~~~gpg~ggq~F~~~~~~kI~~l~~~~----~~~~I~VDGGI~~~~~~~~~~ 277 (277)
+.++++.+|..+ +||+ +||||||.|++++++||+++|++. .++.|+||||||.+|++++++
T Consensus 148 i~~~l~~vD~VL-----vMtV------~PGfgGQ~Fi~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~~~ti~~l~~ 212 (254)
T PRK14057 148 IIPILSDVEVIQ-----LLAV------NPGYGSKMRSSDLHERVAQLLCLLGDKREGKIIVIDGSLTQDQLPSLIA 212 (254)
T ss_pred HHHHHHhCCEEE-----EEEE------CCCCCchhccHHHHHHHHHHHHHHHhcCCCceEEEECCCCHHHHHHHHH
Confidence 666777788876 4555 599999999999999999999753 358899999999999998863
No 20
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=99.97 E-value=2.8e-30 Score=225.24 Aligned_cols=201 Identities=40% Similarity=0.720 Sum_probs=178.3
Q ss_pred EeeeccccCcccHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcC
Q psy11600 8 IGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADAN 87 (277)
Q Consensus 8 ~~~s~~~~d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag 87 (277)
|+|||+|+|+.++.++++.+.+.|+|++|+|+|||+|+||+++|++.++++|+. ++.++++|+|+.++.++++.+.++|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~g~d~i~~~~~Dg~~~~~~~~~~~~v~~i~~~-~~~~v~v~lm~~~~~~~~~~~~~~g 79 (210)
T TIGR01163 1 IAPSILSADFARLGEEVKAVEEAGADWIHVDVMDGHFVPNLTFGPPVLEALRKY-TDLPIDVHLMVENPDRYIEDFAEAG 79 (210)
T ss_pred CcchhhcCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCcccCHHHHHHHHhc-CCCcEEEEeeeCCHHHHHHHHHHcC
Confidence 589999999999999999999999999999999999999999999999999974 8889999999999999999999999
Q ss_pred CCeEEEeccCCCCCHHHHHHHHhhCCCcccchhhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCCccceeeCCCCC
Q psy11600 88 VDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTP 167 (277)
Q Consensus 88 ~d~i~~H~e~~d~g~~~i~~i~~~~~~~~d~p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~i~p~t~ 167 (277)
+|.+++|.+..+ .....++.+++.|.+.++++.+.++
T Consensus 80 adgv~vh~~~~~-------------------------------------------~~~~~~~~~~~~g~~~~~~~~~~t~ 116 (210)
T TIGR01163 80 ADIITVHPEASE-------------------------------------------HIHRLLQLIKDLGAKAGIVLNPATP 116 (210)
T ss_pred CCEEEEccCCch-------------------------------------------hHHHHHHHHHHcCCcEEEEECCCCC
Confidence 999999987655 4566778888899999999999999
Q ss_pred HHhHHHHHhhcCceEEEEecCCCCCchhhhhhhhhHHHHHhhCC----CccEEEeCCCCcCcHHHHHHccCCC---CCcc
Q psy11600 168 VDVIAEYIESADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYP----TLNIEVDGGVGPNTIDECAKCLTGF---GGQK 240 (277)
Q Consensus 168 ~~~i~~~i~~~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~~----~~~i~vdGgV~~~tv~~~~~~gpg~---ggq~ 240 (277)
.+.+..+...+|.++.+++.||++|+.|.+..++++++++++.. .+.+.++|||+.+|+.++.+.|++. |+..
T Consensus 117 ~e~~~~~~~~~d~i~~~~~~~g~tg~~~~~~~~~~i~~i~~~~~~~~~~~~i~v~GGI~~env~~l~~~gad~iivgsai 196 (210)
T TIGR01163 117 LEFLEYVLPDVDLVLLMSVNPGFGGQKFIPDTLEKIREVRKMIDENGLSILIEVDGGVNDDNARELAEAGADILVAGSAI 196 (210)
T ss_pred HHHHHHHHhhCCEEEEEEEcCCCCcccccHHHHHHHHHHHHHHHhcCCCceEEEECCcCHHHHHHHHHcCCCEEEEChHH
Confidence 99999988889999999999999999888888899888876543 3678999999999999999999995 7777
Q ss_pred ccc-CHHHHHHHH
Q psy11600 241 FMQ-DMMPKVKWL 252 (277)
Q Consensus 241 F~~-~~~~kI~~l 252 (277)
|.+ +..+.++++
T Consensus 197 ~~~~d~~~~~~~~ 209 (210)
T TIGR01163 197 FGADDYKEVIRSL 209 (210)
T ss_pred hCCCCHHHHHHHh
Confidence 763 555555543
No 21
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=99.97 E-value=3.9e-29 Score=219.89 Aligned_cols=206 Identities=40% Similarity=0.752 Sum_probs=183.2
Q ss_pred ceEeeeccccCcccHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHh
Q psy11600 6 CMIGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMAD 85 (277)
Q Consensus 6 ~~~~~s~~~~d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ 85 (277)
..|+|||+++|+.++.++++.+.+.|++++|+|+|||.|+||++++++.++++++..+ .++++|||+.++.++++.+.+
T Consensus 4 ~~~~~s~~~~~~~~~~~~~~~~~~~G~~~i~l~~~d~~~~~~~~~~~~~~~~i~~~~~-~~~~v~l~v~d~~~~i~~~~~ 82 (220)
T PRK05581 4 VLIAPSILSADFARLGEEVKAVEAAGADWIHVDVMDGHFVPNLTIGPPVVEAIRKVTK-LPLDVHLMVENPDRYVPDFAK 82 (220)
T ss_pred cEEEcchhcCCHHHHHHHHHHHHHcCCCEEEEeCccCCcCCCcCcCHHHHHHHHhcCC-CcEEEEeeeCCHHHHHHHHHH
Confidence 3599999999999999999999999999999999999999999999999999997644 789999999999999999999
Q ss_pred cCCCeEEEeccCCCCCHHHHHHHHhhCCCcccchhhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCCccceeeCCC
Q psy11600 86 ANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPK 165 (277)
Q Consensus 86 ag~d~i~~H~e~~d~g~~~i~~i~~~~~~~~d~p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~i~p~ 165 (277)
+|+|++++|.+..+ ......+.++..|.+.|+.+.|.
T Consensus 83 ~g~d~v~vh~~~~~-------------------------------------------~~~~~~~~~~~~~~~~g~~~~~~ 119 (220)
T PRK05581 83 AGADIITFHVEASE-------------------------------------------HIHRLLQLIKSAGIKAGLVLNPA 119 (220)
T ss_pred cCCCEEEEeeccch-------------------------------------------hHHHHHHHHHHcCCEEEEEECCC
Confidence 99999999988655 45567888899999999999889
Q ss_pred CCHHhHHHHHhhcCceEEEEecCCCCCchhhhhhhhhHHHHHhhCCC----ccEEEeCCCCcCcHHHHHHccCCC---CC
Q psy11600 166 TPVDVIAEYIESADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPT----LNIEVDGGVGPNTIDECAKCLTGF---GG 238 (277)
Q Consensus 166 t~~~~i~~~i~~~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~~~----~~i~vdGgV~~~tv~~~~~~gpg~---gg 238 (277)
|+.+.+..+...+|+++++++.||+.||.+....++++++++++.+. +.++++|||+.+|+.++.++|++. |+
T Consensus 120 t~~e~~~~~~~~~d~i~~~~~~~g~tg~~~~~~~~~~i~~~~~~~~~~~~~~~i~v~GGI~~~nv~~l~~~GaD~vvvgS 199 (220)
T PRK05581 120 TPLEPLEDVLDLLDLVLLMSVNPGFGGQKFIPEVLEKIRELRKLIDERGLDILIEVDGGINADNIKECAEAGADVFVAGS 199 (220)
T ss_pred CCHHHHHHHHhhCCEEEEEEECCCCCcccccHHHHHHHHHHHHHHHhcCCCceEEEECCCCHHHHHHHHHcCCCEEEECh
Confidence 99988888888899999999999999999999999999988876542 568899999999999999999995 78
Q ss_pred cccc-cCHHHHHHHHHhh
Q psy11600 239 QKFM-QDMMPKVKWLREN 255 (277)
Q Consensus 239 q~F~-~~~~~kI~~l~~~ 255 (277)
..|. ++..+..+++++.
T Consensus 200 ai~~~~d~~~~~~~~~~~ 217 (220)
T PRK05581 200 AVFGAPDYKEAIDSLRAE 217 (220)
T ss_pred hhhCCCCHHHHHHHHHHH
Confidence 8886 5777777777653
No 22
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=99.97 E-value=4.9e-30 Score=227.09 Aligned_cols=161 Identities=22% Similarity=0.339 Sum_probs=134.0
Q ss_pred eeeeccC---cHHhHHHHHhcCCCeEEEeccCCCC--------CHHHHHHHHhh-CCCcccc------hhhhhHHHHhcC
Q psy11600 69 THMMVQN---PQQWIEPMADANVDQYTFHVEPVDN--------VPQVIRQIKEA-GMKVGQV------LQDWIEPMADAN 130 (277)
Q Consensus 69 ~Hlmv~~---p~~~i~~l~~ag~d~i~~H~e~~d~--------g~~~i~~i~~~-~~~~~d~------p~~~i~~~~~~g 130 (277)
..++..| ++++++++.++|+||+ |+|+||| ||++++++|+. ++.++|+ |++|++.|+++|
T Consensus 4 pSil~ad~~~l~~~i~~l~~~g~~~l--H~DvmDG~Fvpn~tfg~~~i~~i~~~~~~~~~dvHLMv~~p~~~i~~~~~~g 81 (220)
T PRK08883 4 PSILSADFARLGEDVEKVLAAGADVV--HFDVMDNHYVPNLTFGAPICKALRDYGITAPIDVHLMVKPVDRIIPDFAKAG 81 (220)
T ss_pred hhhhhcCHHHHHHHHHHHHHcCCCEE--EEecccCcccCccccCHHHHHHHHHhCCCCCEEEEeccCCHHHHHHHHHHhC
Confidence 3455555 5568999999999999 9999998 99999999998 6766654 999999999999
Q ss_pred CCeEEeecCCCCChHHHHHHHHHhCCccceeeCCCCCHHhHHHHHhhcCceEEEEecCCCCCchhhhhhhhhHHHHHhhC
Q psy11600 131 VDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENY 210 (277)
Q Consensus 131 ~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~i~p~t~~~~i~~~i~~~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~ 210 (277)
||+||||+| +..++.+.++. +++.++..++++||+|+ ++.+.++.
T Consensus 82 ad~i~~H~E---a~~~~~~~l~~---------------------ik~~g~k~GlalnP~Tp-----------~~~i~~~l 126 (220)
T PRK08883 82 ASMITFHVE---ASEHVDRTLQL---------------------IKEHGCQAGVVLNPATP-----------LHHLEYIM 126 (220)
T ss_pred CCEEEEccc---CcccHHHHHHH---------------------HHHcCCcEEEEeCCCCC-----------HHHHHHHH
Confidence 999999999 98888777765 45555566689999998 56666667
Q ss_pred CCccEEEeCCCCcCcHHHHHHccCCCCCcccccCHHHHHHHHHhhCC----CCeEEEeCCCCccCHHHhhC
Q psy11600 211 PTLNIEVDGGVGPNTIDECAKCLTGFGGQKFMQDMMPKVKWLRENYP----TLNIEVDGGVGPNTIDECAK 277 (277)
Q Consensus 211 ~~~~i~vdGgV~~~tv~~~~~~gpg~ggq~F~~~~~~kI~~l~~~~~----~~~I~VDGGI~~~~~~~~~~ 277 (277)
+.+|..+. ||+ +||||||.|++..++||+++|++.. ++.|+||||||.+|++++++
T Consensus 127 ~~~D~vlv-----MtV------~PGfgGq~fi~~~lekI~~l~~~~~~~~~~~~I~vdGGI~~eni~~l~~ 186 (220)
T PRK08883 127 DKVDLILL-----MSV------NPGFGGQSFIPHTLDKLRAVRKMIDESGRDIRLEIDGGVKVDNIREIAE 186 (220)
T ss_pred HhCCeEEE-----EEe------cCCCCCceecHhHHHHHHHHHHHHHhcCCCeeEEEECCCCHHHHHHHHH
Confidence 77888764 444 4999999999999999999998643 47899999999999998753
No 23
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=99.95 E-value=7.3e-27 Score=203.42 Aligned_cols=202 Identities=48% Similarity=0.813 Sum_probs=176.8
Q ss_pred eEeeeccccCcccHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhc
Q psy11600 7 MIGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADA 86 (277)
Q Consensus 7 ~~~~s~~~~d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~a 86 (277)
+|+|||+|+|+.++.++++.+.+.|++++|+|++||.|.|+..+|++.++++|+.+ +.++++|||+.||.++++.+.++
T Consensus 1 ~~~~~~~~~d~~~~~~~~~~~~~~G~~~i~l~~~d~~~~~~~~~~~~~~~~i~~~~-~~~~~v~l~~~d~~~~~~~~~~~ 79 (211)
T cd00429 1 KIAPSILSADFANLGEELKRLEEAGADWIHIDVMDGHFVPNLTFGPPVVKALRKHT-DLPLDVHLMVENPERYIEAFAKA 79 (211)
T ss_pred CceeeeecCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCccccCHHHHHHHHhhC-CCcEEEEeeeCCHHHHHHHHHHc
Confidence 58999999999999999999999999999999999999999999999999999864 78899999999999999999999
Q ss_pred CCCeEEEeccCCCCCHHHHHHHHhhCCCcccchhhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCCccceeeCCCC
Q psy11600 87 NVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKT 166 (277)
Q Consensus 87 g~d~i~~H~e~~d~g~~~i~~i~~~~~~~~d~p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~i~p~t 166 (277)
|+|++++|.+..+ ......+.+++.|.+.|+.+.+.+
T Consensus 80 g~dgv~vh~~~~~-------------------------------------------~~~~~~~~~~~~~~~~g~~~~~~~ 116 (211)
T cd00429 80 GADIITFHAEATD-------------------------------------------HLHRTIQLIKELGMKAGVALNPGT 116 (211)
T ss_pred CCCEEEECccchh-------------------------------------------hHHHHHHHHHHCCCeEEEEecCCC
Confidence 9999999987665 445667788888888999998888
Q ss_pred CHHhHHHHHhhcCceEEEEecCCCCCchhhhhhhhhHHHHHhhCC----CccEEEeCCCCcCcHHHHHHccCCC---CCc
Q psy11600 167 PVDVIAEYIESADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYP----TLNIEVDGGVGPNTIDECAKCLTGF---GGQ 239 (277)
Q Consensus 167 ~~~~i~~~i~~~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~~----~~~i~vdGgV~~~tv~~~~~~gpg~---ggq 239 (277)
+.+.+..+...+|++.++++.||+.++.+-...+++++++++..+ ++.+.++|||+.+++.++.+.|++. |+.
T Consensus 117 ~~~~~~~~~~~~d~i~~~~~~~g~tg~~~~~~~~~~i~~~~~~~~~~~~~~pi~v~GGI~~env~~~~~~gad~iivgsa 196 (211)
T cd00429 117 PVEVLEPYLDEVDLVLVMSVNPGFGGQKFIPEVLEKIRKLRELIPENNLNLLIEVDGGINLETIPLLAEAGADVLVAGSA 196 (211)
T ss_pred CHHHHHHHHhhCCEEEEEEECCCCCCcccCHHHHHHHHHHHHHHHhcCCCeEEEEECCCCHHHHHHHHHcCCCEEEECHH
Confidence 888788887779999999999999888888888888888877654 5789999999999999999999995 777
Q ss_pred ccc-cCHHHHHHHH
Q psy11600 240 KFM-QDMMPKVKWL 252 (277)
Q Consensus 240 ~F~-~~~~~kI~~l 252 (277)
.|. ++..+.++++
T Consensus 197 i~~~~~~~~~~~~~ 210 (211)
T cd00429 197 LFGSDDYAEAIKEL 210 (211)
T ss_pred HhCCCCHHHHHHHh
Confidence 776 4555666554
No 24
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=99.92 E-value=1.2e-24 Score=193.85 Aligned_cols=164 Identities=29% Similarity=0.487 Sum_probs=133.6
Q ss_pred CeeeeeeeccC---cHHhHHHHHhcCCCeEEEeccCCCC--------CHHHHHHHHhhC-CCcccc------hhhhhHHH
Q psy11600 65 AFFETHMMVQN---PQQWIEPMADANVDQYTFHVEPVDN--------VPQVIRQIKEAG-MKVGQV------LQDWIEPM 126 (277)
Q Consensus 65 ~~~d~Hlmv~~---p~~~i~~l~~ag~d~i~~H~e~~d~--------g~~~i~~i~~~~-~~~~d~------p~~~i~~~ 126 (277)
..+.+.+|..| ++++++.+.++|+|++ |+|+||| |+++++++|+.+ ..++|+ |..|++.+
T Consensus 7 ~~i~pSi~~~d~~~l~~~~~~l~~~~~~~~--H~DimDg~fvpn~~~G~~~v~~lr~~~~~~~lDvHLm~~~p~~~i~~~ 84 (228)
T PTZ00170 7 AIIAPSILAADFSKLADEAQDVLSGGADWL--HVDVMDGHFVPNLSFGPPVVKSLRKHLPNTFLDCHLMVSNPEKWVDDF 84 (228)
T ss_pred CEEehhHhhcCHHHHHHHHHHHHHcCCCEE--EEecccCccCCCcCcCHHHHHHHHhcCCCCCEEEEECCCCHHHHHHHH
Confidence 45677888887 4567999999999999 9999997 999999999998 556654 99999999
Q ss_pred HhcCCCeEEeecCCCCChHH-HHHHHHHhCCccceeeCCCCCHHhHHHHHhhcCceEEEEecCCCCCchhhhhhhhhHHH
Q psy11600 127 ADANVDQYTFHVEPVDNVPQ-VIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIMTVEPGFGGQKFMQDMMPKVKW 205 (277)
Q Consensus 127 ~~~g~d~it~H~E~~~~~~~-~~~~I~~~g~~~g~~i~p~t~~~~i~~~i~~~d~vl~mav~Pgt~gq~~~~~~l~kI~~ 205 (277)
+++|||++|||.| +..+ +.+.++ .+++.+..++++++|.|+. +.
T Consensus 85 ~~~Gad~itvH~e---a~~~~~~~~l~---------------------~ik~~G~~~gval~p~t~~-----------e~ 129 (228)
T PTZ00170 85 AKAGASQFTFHIE---ATEDDPKAVAR---------------------KIREAGMKVGVAIKPKTPV-----------EV 129 (228)
T ss_pred HHcCCCEEEEecc---CCchHHHHHHH---------------------HHHHCCCeEEEEECCCCCH-----------HH
Confidence 9999999999999 8766 444444 4566677888999999973 33
Q ss_pred HHhhC--CCccEEEeCCCCcCcHHHHHHccCCCCCcccccCHHHHHHHHHhhCCCCeEEEeCCCCccCHHHhh
Q psy11600 206 LRENY--PTLNIEVDGGVGPNTIDECAKCLTGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECA 276 (277)
Q Consensus 206 l~~~~--~~~~i~vdGgV~~~tv~~~~~~gpg~ggq~F~~~~~~kI~~l~~~~~~~~I~VDGGI~~~~~~~~~ 276 (277)
++++. +.++.++ .|++ .||++||.|.+.+++|++++++..+...|+||||||++|++.++
T Consensus 130 l~~~l~~~~vD~Vl-----~m~v------~pG~~gq~~~~~~~~ki~~~~~~~~~~~I~VdGGI~~~ti~~~~ 191 (228)
T PTZ00170 130 LFPLIDTDLVDMVL-----VMTV------EPGFGGQSFMHDMMPKVRELRKRYPHLNIQVDGGINLETIDIAA 191 (228)
T ss_pred HHHHHccchhhhHH-----hhhc------ccCCCCcEecHHHHHHHHHHHHhcccCeEEECCCCCHHHHHHHH
Confidence 33333 3344432 4565 59999999999999999999998888999999999999998875
No 25
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=99.88 E-value=4.3e-22 Score=178.84 Aligned_cols=184 Identities=23% Similarity=0.303 Sum_probs=157.3
Q ss_pred eeccccCcc--cHHHHHHHHHHcCCCEEEEe------ccccccccCCC-----------CCHHHHHHHHhcCCCCeeeee
Q psy11600 10 PSILNSDLS--NLHSESQNLLDSGADYLHLD------VMDGTFVPNLT-----------FGHPVVKCLRNKIPKAFFETH 70 (277)
Q Consensus 10 ~s~~~~d~~--~l~~~~~~l~~~~~~~~h~D------imDg~fvp~~~-----------~g~~~v~~l~~~~~~~~~d~H 70 (277)
|=+.+.++. ++.+.++.+++.|+|++|+| +|||+|++|.+ ++++.++++|+. .++| +|
T Consensus 4 ~y~~~G~P~~~~~~~~~~~l~~~Gad~iel~iPfsdPv~DG~~I~~a~~~al~~g~~~~~~~~~~~~vr~~-~~~p--v~ 80 (242)
T cd04724 4 PYITAGDPDLETTLEILKALVEAGADIIELGIPFSDPVADGPVIQAASERALANGVTLKDVLELVKEIRKK-NTIP--IV 80 (242)
T ss_pred EEEeCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhc-CCCC--EE
Confidence 444555554 78899999999999999999 99999999977 899999999986 4666 69
Q ss_pred eecc-Cc------HHhHHHHHhcCCCeEEEeccCCCCCHHHHHHHHhhCCCcccchhhhhHHHHhcCCCeEEeecCCCCC
Q psy11600 71 MMVQ-NP------QQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPMADANVDQYTFHVEPVDN 143 (277)
Q Consensus 71 lmv~-~p------~~~i~~l~~ag~d~i~~H~e~~d~g~~~i~~i~~~~~~~~d~p~~~i~~~~~~g~d~it~H~E~~~~ 143 (277)
||+. || +++++.+.++|++.+++|-. |+| .
T Consensus 81 lm~y~n~~~~~G~~~fi~~~~~aG~~giiipDl----------------------------------------~~e---e 117 (242)
T cd04724 81 LMGYYNPILQYGLERFLRDAKEAGVDGLIIPDL----------------------------------------PPE---E 117 (242)
T ss_pred EEEecCHHHHhCHHHHHHHHHHCCCcEEEECCC----------------------------------------CHH---H
Confidence 9999 87 78888888889888887521 223 4
Q ss_pred hHHHHHHHHHhCCccceeeCCCCCHHhHHHHHh-hcCceEEEEecCCCCCch-hhhhhhhhHHHHHhhCCCccEEEeCCC
Q psy11600 144 VPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIE-SADLVLIMTVEPGFGGQK-FMQDMMPKVKWLRENYPTLNIEVDGGV 221 (277)
Q Consensus 144 ~~~~~~~I~~~g~~~g~~i~p~t~~~~i~~~i~-~~d~vl~mav~Pgt~gq~-~~~~~l~kI~~l~~~~~~~~i~vdGgV 221 (277)
..+..+.+++.|++.+..++|.|+.+.++++++ ..|++.+|+++|+|++|. |.+...++++++++. .++.+.++|||
T Consensus 118 ~~~~~~~~~~~g~~~i~~i~P~T~~~~i~~i~~~~~~~vy~~s~~g~tG~~~~~~~~~~~~i~~lr~~-~~~pI~vggGI 196 (242)
T cd04724 118 AEEFREAAKEYGLDLIFLVAPTTPDERIKKIAELASGFIYYVSRTGVTGARTELPDDLKELIKRIRKY-TDLPIAVGFGI 196 (242)
T ss_pred HHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhhCCCCEEEEeCCCCCCCccCCChhHHHHHHHHHhc-CCCcEEEEccC
Confidence 567888999999999999999999999999998 899999999999999998 888899999999986 58899999999
Q ss_pred Cc-CcHHHHHHccCCC---CCccc
Q psy11600 222 GP-NTIDECAKCLTGF---GGQKF 241 (277)
Q Consensus 222 ~~-~tv~~~~~~gpg~---ggq~F 241 (277)
+- ++++.+.++ ++. |+..|
T Consensus 197 ~~~e~~~~~~~~-ADgvVvGSaiv 219 (242)
T cd04724 197 STPEQAAEVAKY-ADGVIVGSALV 219 (242)
T ss_pred CCHHHHHHHHcc-CCEEEECHHHH
Confidence 95 499999998 874 65544
No 26
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=99.85 E-value=9.6e-21 Score=179.88 Aligned_cols=202 Identities=16% Similarity=0.220 Sum_probs=166.5
Q ss_pred ccccCcccHHHHHHHHHHcCCCEEEEeccc--cccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHh-HHHHHhcCC
Q psy11600 12 ILNSDLSNLHSESQNLLDSGADYLHLDVMD--GTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQW-IEPMADANV 88 (277)
Q Consensus 12 ~~~~d~~~l~~~~~~l~~~~~~~~h~DimD--g~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~-i~~l~~ag~ 88 (277)
+++.|..++++.++.+++.+ ++- +++.. ..+. .+||+++|++||+..|++++++|||+.||.++ ++.+.++|+
T Consensus 176 ~vALD~~~~~~A~~i~~~l~-~~~-~~~iKvG~~L~--~~~G~~iVk~Lr~~~~~~~I~~DLK~~Di~~~vv~~~a~aGA 251 (391)
T PRK13307 176 QVALDLPDLEEVERVLSQLP-KSD-HIIIEAGTPLI--KKFGLEVISKIREVRPDAFIVADLKTLDTGNLEARMAADATA 251 (391)
T ss_pred EEecCCCCHHHHHHHHHhcc-ccc-ceEEEECHHHH--HHhCHHHHHHHHHhCCCCeEEEEecccChhhHHHHHHHhcCC
Confidence 56789999999999988873 221 34556 3444 56899999999997799999999999999999 889999999
Q ss_pred CeEEEeccCCCCCHHHHHHHHhhCCCcccchhhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCCccce-eeCCCCC
Q psy11600 89 DQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGL-AIKPKTP 167 (277)
Q Consensus 89 d~i~~H~e~~d~g~~~i~~i~~~~~~~~d~p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~~g~-~i~p~t~ 167 (277)
|++|||.++... ++....+.+++.|++.++ .++|.++
T Consensus 252 D~vTVH~ea~~~------------------------------------------ti~~ai~~akk~GikvgVD~lnp~tp 289 (391)
T PRK13307 252 DAVVISGLAPIS------------------------------------------TIEKAIHEAQKTGIYSILDMLNVEDP 289 (391)
T ss_pred CEEEEeccCCHH------------------------------------------HHHHHHHHHHHcCCEEEEEEcCCCCH
Confidence 999999987541 356788889999999999 9999999
Q ss_pred HHhHHHHHhhcCceEEEE-ecCCCCCchhhhhhhhhHHHHHhhCCCccEEEeCCCCcCcHHHHHHccCCC---CCcccc-
Q psy11600 168 VDVIAEYIESADLVLIMT-VEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKCLTGF---GGQKFM- 242 (277)
Q Consensus 168 ~~~i~~~i~~~d~vl~ma-v~Pgt~gq~~~~~~l~kI~~l~~~~~~~~i~vdGgV~~~tv~~~~~~gpg~---ggq~F~- 242 (277)
.+.+.++....|++++|+ ++|++ + ...+++|++++++..++.+++||||+.+|++.+.++|+++ |+..|.
T Consensus 290 ~e~i~~l~~~vD~Vllht~vdp~~--~---~~~~~kI~~ikk~~~~~~I~VdGGI~~eti~~l~~aGADivVVGsaIf~a 364 (391)
T PRK13307 290 VKLLESLKVKPDVVELHRGIDEEG--T---EHAWGNIKEIKKAGGKILVAVAGGVRVENVEEALKAGADILVVGRAITKS 364 (391)
T ss_pred HHHHHHhhCCCCEEEEccccCCCc--c---cchHHHHHHHHHhCCCCcEEEECCcCHHHHHHHHHcCCCEEEEeHHHhCC
Confidence 999999988899999997 99983 2 3466799999988778899999999999999999999996 888887
Q ss_pred cCHHHHHHHHHhhC----CCCeEEEe
Q psy11600 243 QDMMPKVKWLRENY----PTLNIEVD 264 (277)
Q Consensus 243 ~~~~~kI~~l~~~~----~~~~I~VD 264 (277)
++..+.++++++.. .+++|.-|
T Consensus 365 ~Dp~~aak~l~~~i~~~~~~~~~~~~ 390 (391)
T PRK13307 365 KDVRRAAEDFLNKLKPDIDQFRLMTD 390 (391)
T ss_pred CCHHHHHHHHHHhhccCchhheeecC
Confidence 47777778777643 24555544
No 27
>PRK13306 ulaD 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional
Probab=99.84 E-value=3.3e-20 Score=164.00 Aligned_cols=196 Identities=13% Similarity=0.177 Sum_probs=166.0
Q ss_pred eccccCcccHHHHHHHHHHcCCCEEEEeccc--cccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHH-HHHhcC
Q psy11600 11 SILNSDLSNLHSESQNLLDSGADYLHLDVMD--GTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIE-PMADAN 87 (277)
Q Consensus 11 s~~~~d~~~l~~~~~~l~~~~~~~~h~DimD--g~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~-~l~~ag 87 (277)
=+++.|..++++.++.+++. .++ +|+.. .++. +++|+++++.||+.+|++++++|||+.|+.+++. .+.++|
T Consensus 6 l~vALD~~~~~~a~~l~~~l-~~~--v~~~kvG~~l~--~~~G~~~i~~lk~~~~~~~v~~DLK~~Di~~~v~~~~~~~G 80 (216)
T PRK13306 6 LQIALDNQDLESAIEDAKKV-AEE--VDIIEVGTILL--LAEGMKAVRVLRALYPDKIIVADTKIADAGKILAKMAFEAG 80 (216)
T ss_pred EEEEecCCCHHHHHHHHHHc-ccc--CCEEEEChHHH--HHhCHHHHHHHHHHCCCCEEEEEEeecCCcHHHHHHHHHCC
Confidence 46778999999999998886 454 68877 4444 6789999999999889999999999999999876 788999
Q ss_pred CCeEEEeccCCCCCHHHHHHHHhhCCCcccchhhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCCccceeeCCCCC
Q psy11600 88 VDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTP 167 (277)
Q Consensus 88 ~d~i~~H~e~~d~g~~~i~~i~~~~~~~~d~p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~i~p~t~ 167 (277)
+|++|+|.+..+ . .+....+.+++.|++.++.+.+.++
T Consensus 81 ad~vTvH~~a~~---~---------------------------------------~i~~~~~~~~~~g~~~~V~llts~~ 118 (216)
T PRK13306 81 ADWVTVICAAHI---P---------------------------------------TIKAALKVAKEFNGEIQIELYGNWT 118 (216)
T ss_pred CCEEEEeCCCCH---H---------------------------------------HHHHHHHHHHHcCCEEEEEECCCCC
Confidence 999999987644 1 3455667777778899999999999
Q ss_pred HHhHHHHHh--hcCceEEEEecCCCCCchhhhhhhhhHHHHHhhCCCccEEEeCCCCcCcHHHHHHccCCC---CCcccc
Q psy11600 168 VDVIAEYIE--SADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKCLTGF---GGQKFM 242 (277)
Q Consensus 168 ~~~i~~~i~--~~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~~~~~i~vdGgV~~~tv~~~~~~gpg~---ggq~F~ 242 (277)
.+.+...++ ..++++.|+++|++.||.|.+..++++++++. +++.+.|+|||+.+|++.+.++|+++ |+..|.
T Consensus 119 ~~~l~~~~~~~~~~~vl~~a~~~~~~G~v~s~~~~~~ir~~~~--~~~~i~V~gGI~~~~~~~~~~~~ad~~VvGr~I~~ 196 (216)
T PRK13306 119 WEQAQQWRDAGISQVIYHRSRDAQLAGVAWGEKDLNKVKKLSD--MGFKVSVTGGLVVEDLKLFKGIPVKTFIAGRAIRG 196 (216)
T ss_pred HHHHHHHHcCChhhhhhhhhhhhhhcCCCCCHHHHHHHHHHhc--CCCeEEEcCCCCHhhHHHHhcCCCCEEEECCcccC
Confidence 998886666 67899999999999999999999999999875 45679999999999999999999996 888887
Q ss_pred -cCHHHHHHHHHhh
Q psy11600 243 -QDMMPKVKWLREN 255 (277)
Q Consensus 243 -~~~~~kI~~l~~~ 255 (277)
++..+.++++++.
T Consensus 197 a~dp~~a~~~i~~~ 210 (216)
T PRK13306 197 AADPAAAARAFKDE 210 (216)
T ss_pred CCCHHHHHHHHHHH
Confidence 5777777777753
No 28
>PRK13813 orotidine 5'-phosphate decarboxylase; Provisional
Probab=99.84 E-value=4.1e-21 Score=169.02 Aligned_cols=194 Identities=18% Similarity=0.225 Sum_probs=159.5
Q ss_pred ccccCcccHHHHHHHHHHcCCCEEEEeccc--cccccCCCCCHHHHHHHHhcCCCCeeeeeee-ccC-cHHhHHHHHhcC
Q psy11600 12 ILNSDLSNLHSESQNLLDSGADYLHLDVMD--GTFVPNLTFGHPVVKCLRNKIPKAFFETHMM-VQN-PQQWIEPMADAN 87 (277)
Q Consensus 12 ~~~~d~~~l~~~~~~l~~~~~~~~h~DimD--g~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlm-v~~-p~~~i~~l~~ag 87 (277)
++++|..++++.++.+++. .+. +|+.. ..|. ++||+++++.+|+. +++++|+|+| +.+ +..+++.+.++|
T Consensus 7 ~~alD~~~~~~~~~~~~~~-~~~--~~~vk~g~~l~--~~~G~~~v~~ir~~-~~i~~D~k~~di~~~~~~~~~~~~~~g 80 (215)
T PRK13813 7 ILALDVTDRERALKIAEEL-DDY--VDAIKVGWPLV--LASGLGIIEELKRY-APVIADLKVADIPNTNRLICEAVFEAG 80 (215)
T ss_pred EEEeCCCCHHHHHHHHHhc-ccc--CCEEEEcHHHH--HhhCHHHHHHHHhc-CCEEEEeeccccHHHHHHHHHHHHhCC
Confidence 4678999999999999876 565 68888 3455 57999999999985 7899999997 554 555569999999
Q ss_pred CCeEEEeccCCCCCHHHHHHHHhhCCCcccchhhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCCccceeeCCCCC
Q psy11600 88 VDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTP 167 (277)
Q Consensus 88 ~d~i~~H~e~~d~g~~~i~~i~~~~~~~~d~p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~i~p~t~ 167 (277)
+|++|||+++... ++...++.+++.|++.++++++.+
T Consensus 81 ad~vtvh~e~g~~------------------------------------------~l~~~i~~~~~~g~~~~v~~~~~~- 117 (215)
T PRK13813 81 AWGIIVHGFTGRD------------------------------------------SLKAVVEAAAESGGKVFVVVEMSH- 117 (215)
T ss_pred CCEEEEcCcCCHH------------------------------------------HHHHHHHHHHhcCCeEEEEEeCCC-
Confidence 9999999996430 355677888999999999999975
Q ss_pred HHhHHHHHhhcCceEEEEecCCCCCchhhhhhhhhHHHHHhhCCC-ccEEEeCCCCcCc--HHHHHHccCCC---CCccc
Q psy11600 168 VDVIAEYIESADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPT-LNIEVDGGVGPNT--IDECAKCLTGF---GGQKF 241 (277)
Q Consensus 168 ~~~i~~~i~~~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~~~-~~i~vdGgV~~~t--v~~~~~~gpg~---ggq~F 241 (277)
.+.+..+++.++.++.|+++||+.||+|.+..+++|+++++..+. +.+ +||||+..+ ++.+.++|+++ |+..|
T Consensus 118 ~~~~~~~~~~~~~v~~m~~e~G~~g~~~~~~~~~~i~~l~~~~~~~~~i-vdgGI~~~g~~~~~~~~aGad~iV~Gr~I~ 196 (215)
T PRK13813 118 PGALEFIQPHADKLAKLAQEAGAFGVVAPATRPERVRYIRSRLGDELKI-ISPGIGAQGGKAADAIKAGADYVIVGRSIY 196 (215)
T ss_pred CCCCCCHHHHHHHHHHHHHHhCCCeEEECCCcchhHHHHHHhcCCCcEE-EeCCcCCCCCCHHHHHHcCCCEEEECcccC
Confidence 455556667788889999999999999999889999999887664 567 999999986 99999999996 77888
Q ss_pred c-cCHHHHHHHHHhh
Q psy11600 242 M-QDMMPKVKWLREN 255 (277)
Q Consensus 242 ~-~~~~~kI~~l~~~ 255 (277)
. ++..+.++.+++.
T Consensus 197 ~~~d~~~~~~~l~~~ 211 (215)
T PRK13813 197 NAADPREAAKAINEE 211 (215)
T ss_pred CCCCHHHHHHHHHHH
Confidence 6 5788888888764
No 29
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=99.83 E-value=2.3e-19 Score=156.63 Aligned_cols=193 Identities=20% Similarity=0.260 Sum_probs=162.0
Q ss_pred ccccCcccHHHHHHHHHHcCCCEEEEeccc-c-ccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHh-HHHHHhcCC
Q psy11600 12 ILNSDLSNLHSESQNLLDSGADYLHLDVMD-G-TFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQW-IEPMADANV 88 (277)
Q Consensus 12 ~~~~d~~~l~~~~~~l~~~~~~~~h~DimD-g-~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~-i~~l~~ag~ 88 (277)
+.++|..++++.++.++.. -+ ++|+.+ | ++. ..+|++.++.+|+.+|+..+.+|+++++|.++ ++.+.++|+
T Consensus 3 ~~alD~~~~~~a~~~~~~l-~~--~v~~iev~~~l~--~~~g~~~i~~l~~~~~~~~i~~d~k~~d~~~~~~~~~~~~Ga 77 (206)
T TIGR03128 3 QLALDLLDIEEALELAEKV-AD--YVDIIEIGTPLI--KNEGIEAVKEMKEAFPDRKVLADLKTMDAGEYEAEQAFAAGA 77 (206)
T ss_pred EEEecCCCHHHHHHHHHHc-cc--CeeEEEeCCHHH--HHhCHHHHHHHHHHCCCCEEEEEEeeccchHHHHHHHHHcCC
Confidence 4578999999999888876 34 377787 3 343 45899999999998898888899988899998 999999999
Q ss_pred CeEEEeccCCCCCHHHHHHHHhhCCCcccchhhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCCccceee-CCCCC
Q psy11600 89 DQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAI-KPKTP 167 (277)
Q Consensus 89 d~i~~H~e~~d~g~~~i~~i~~~~~~~~d~p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~i-~p~t~ 167 (277)
|++++|+++... ++.++++.+++.|++.++++ +|.|+
T Consensus 78 d~i~vh~~~~~~------------------------------------------~~~~~i~~~~~~g~~~~~~~~~~~t~ 115 (206)
T TIGR03128 78 DIVTVLGVADDA------------------------------------------TIKGAVKAAKKHGKEVQVDLINVKDK 115 (206)
T ss_pred CEEEEeccCCHH------------------------------------------HHHHHHHHHHHcCCEEEEEecCCCCh
Confidence 999999986431 35678888999999999994 99999
Q ss_pred HHhHHHHHh-hcCceEEEEecCCCCCchhhhhhhhhHHHHHhhCCCccEEEeCCCCcCcHHHHHHccCCC---CCcccc-
Q psy11600 168 VDVIAEYIE-SADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKCLTGF---GGQKFM- 242 (277)
Q Consensus 168 ~~~i~~~i~-~~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~~~~~i~vdGgV~~~tv~~~~~~gpg~---ggq~F~- 242 (277)
.+.+.++.+ .+|++ .++||+.+|.+.+..+++++++++..+...++++|||+.+|++++.++|++. |+..|.
T Consensus 116 ~~~~~~~~~~g~d~v---~~~pg~~~~~~~~~~~~~i~~l~~~~~~~~i~v~GGI~~~n~~~~~~~Ga~~v~vGsai~~~ 192 (206)
T TIGR03128 116 VKRAKELKELGADYI---GVHTGLDEQAKGQNPFEDLQTILKLVKEARVAVAGGINLDTIPDVIKLGPDIVIVGGAITKA 192 (206)
T ss_pred HHHHHHHHHcCCCEE---EEcCCcCcccCCCCCHHHHHHHHHhcCCCcEEEECCcCHHHHHHHHHcCCCEEEEeehhcCC
Confidence 888887776 57754 7799999999988889999999998888899999999999999999999995 788887
Q ss_pred cCHHHHHHHHHh
Q psy11600 243 QDMMPKVKWLRE 254 (277)
Q Consensus 243 ~~~~~kI~~l~~ 254 (277)
++..+.++.+++
T Consensus 193 ~d~~~~~~~l~~ 204 (206)
T TIGR03128 193 ADPAEAARQIRK 204 (206)
T ss_pred CCHHHHHHHHHh
Confidence 467777777775
No 30
>PLN02334 ribulose-phosphate 3-epimerase
Probab=99.80 E-value=1e-18 Score=155.56 Aligned_cols=165 Identities=32% Similarity=0.535 Sum_probs=130.6
Q ss_pred CCeeeeeeeccC---cHHhHHHHHhcCCCeEEEeccCCCC--------CHHHHHHHHhhCCCcccc------hhhhhHHH
Q psy11600 64 KAFFETHMMVQN---PQQWIEPMADANVDQYTFHVEPVDN--------VPQVIRQIKEAGMKVGQV------LQDWIEPM 126 (277)
Q Consensus 64 ~~~~d~Hlmv~~---p~~~i~~l~~ag~d~i~~H~e~~d~--------g~~~i~~i~~~~~~~~d~------p~~~i~~~ 126 (277)
+..+...++..+ +.+.++.+.++|++++ |+|.+|+ |+++++++|+.+..++++ |.+|++.+
T Consensus 7 ~~~i~~s~~~~~~~~l~~~l~~~~~~g~~~i--hld~~d~~f~~~~~~g~~~~~~l~~~~~~~~~vhlmv~~p~d~~~~~ 84 (229)
T PLN02334 7 DAIIAPSILSADFANLAEEAKRVLDAGADWL--HVDVMDGHFVPNLTIGPPVVKALRKHTDAPLDCHLMVTNPEDYVPDF 84 (229)
T ss_pred CceEEeehhhcCHHHHHHHHHHHHHcCCCEE--EEecccCCcCCccccCHHHHHHHHhcCCCcEEEEeccCCHHHHHHHH
Confidence 345666777655 4457888899999999 8899886 789999999998766443 89999999
Q ss_pred HhcCCCeEEeecCCCCC--hHHHHHHHHHhCCccceeeCCCCCHHhHHHHHhhcCceEEEEecCCCCCchhhhhhhhhHH
Q psy11600 127 ADANVDQYTFHVEPVDN--VPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIMTVEPGFGGQKFMQDMMPKVK 204 (277)
Q Consensus 127 ~~~g~d~it~H~E~~~~--~~~~~~~I~~~g~~~g~~i~p~t~~~~i~~~i~~~d~vl~mav~Pgt~gq~~~~~~l~kI~ 204 (277)
.++|||++|||.| . ...+.+.+++ +...+..++++++|.|+ .+
T Consensus 85 ~~~gad~v~vH~~---q~~~d~~~~~~~~---------------------i~~~g~~iGls~~~~t~-----------~~ 129 (229)
T PLN02334 85 AKAGASIFTFHIE---QASTIHLHRLIQQ---------------------IKSAGMKAGVVLNPGTP-----------VE 129 (229)
T ss_pred HHcCCCEEEEeec---cccchhHHHHHHH---------------------HHHCCCeEEEEECCCCC-----------HH
Confidence 9999999999998 5 4445555554 45566778899999886 34
Q ss_pred HHHhhCCC--ccEEEeCCCCcCcHHHHHHccCCCCCcccccCHHHHHHHHHhhCCCCeEEEeCCCCccCHHHhh
Q psy11600 205 WLRENYPT--LNIEVDGGVGPNTIDECAKCLTGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECA 276 (277)
Q Consensus 205 ~l~~~~~~--~~i~vdGgV~~~tv~~~~~~gpg~ggq~F~~~~~~kI~~l~~~~~~~~I~VDGGI~~~~~~~~~ 276 (277)
.++++... ++....|++. ||+++|.|.+..+++++++++..++..|+||||||.+|++++.
T Consensus 130 ~~~~~~~~~~~Dyi~~~~v~-----------pg~~~~~~~~~~~~~i~~~~~~~~~~~I~a~GGI~~e~i~~l~ 192 (229)
T PLN02334 130 AVEPVVEKGLVDMVLVMSVE-----------PGFGGQSFIPSMMDKVRALRKKYPELDIEVDGGVGPSTIDKAA 192 (229)
T ss_pred HHHHHHhccCCCEEEEEEEe-----------cCCCccccCHHHHHHHHHHHHhCCCCcEEEeCCCCHHHHHHHH
Confidence 44444455 6776655553 9999999999999999999998777789999999999998875
No 31
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=99.80 E-value=5e-18 Score=152.59 Aligned_cols=185 Identities=16% Similarity=0.184 Sum_probs=148.9
Q ss_pred eEeeeccccCcc--cHHHHHHHHHHcCCCEEEEeccccccccCCCCCH---------------HHHHHHHhcCCCCeeee
Q psy11600 7 MIGPSILNSDLS--NLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGH---------------PVVKCLRNKIPKAFFET 69 (277)
Q Consensus 7 ~~~~s~~~~d~~--~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~---------------~~v~~l~~~~~~~~~d~ 69 (277)
.+.|=+.+.|+. .+.+.++.+++. +|.+=+.+ +|-.-..=|+ ++++++|+. +++|+
T Consensus 5 ~~i~y~~~G~p~~~~~~~~~~~l~~~-ad~iElgi---p~sdp~adG~~i~~~~~~a~~~g~~~~v~~vr~~-~~~Pl-- 77 (244)
T PRK13125 5 GLVVYLTAGYPNVESFKEFIIGLVEL-VDILELGI---PPKYPKYDGPVIRKSHRKVKGLDIWPLLEEVRKD-VSVPI-- 77 (244)
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHhh-CCEEEECC---CCCCCCCCCHHHHHHHHHHHHcCcHHHHHHHhcc-CCCCE--
Confidence 356667777544 566677777765 77766655 3321122243 478888864 78887
Q ss_pred eee------ccCcHHhHHHHHhcCCCeEEEe---ccCCCCCHHHHHHHHhhCCCcccchhhhhHHHHhcCCCeEEeecCC
Q psy11600 70 HMM------VQNPQQWIEPMADANVDQYTFH---VEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPMADANVDQYTFHVEP 140 (277)
Q Consensus 70 Hlm------v~~p~~~i~~l~~ag~d~i~~H---~e~~d~g~~~i~~i~~~~~~~~d~p~~~i~~~~~~g~d~it~H~E~ 140 (277)
|+| +.+|.++++.+.++|+|.+++| +|+.+
T Consensus 78 ~lM~y~n~~~~~~~~~i~~~~~~Gadgvii~dlp~e~~~----------------------------------------- 116 (244)
T PRK13125 78 ILMTYLEDYVDSLDNFLNMARDVGADGVLFPDLLIDYPD----------------------------------------- 116 (244)
T ss_pred EEEEecchhhhCHHHHHHHHHHcCCCEEEECCCCCCcHH-----------------------------------------
Confidence 787 7899999999999999999999 45433
Q ss_pred CCChHHHHHHHHHhCCccceeeCCCCCHHhHHHHHhhcCceEEEEecCCCCCchhhhhhhhhHHHHHhhCCCccEEEeCC
Q psy11600 141 VDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGG 220 (277)
Q Consensus 141 ~~~~~~~~~~I~~~g~~~g~~i~p~t~~~~i~~~i~~~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~~~~~i~vdGg 220 (277)
...++++.+++.|++.++.++|.||.+.++++++..|.++.|+++|+|+ ++|.+++.+++++++++.++..+++|||
T Consensus 117 --~~~~~~~~~~~~Gl~~~~~v~p~T~~e~l~~~~~~~~~~l~msv~~~~g-~~~~~~~~~~i~~lr~~~~~~~i~v~gG 193 (244)
T PRK13125 117 --DLEKYVEIIKNKGLKPVFFTSPKFPDLLIHRLSKLSPLFIYYGLRPATG-VPLPVSVERNIKRVRNLVGNKYLVVGFG 193 (244)
T ss_pred --HHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHhCCCEEEEEeCCCCC-CCchHHHHHHHHHHHHhcCCCCEEEeCC
Confidence 4567888999999999999999999999999999999999999999995 5899999999999999887778999999
Q ss_pred C-CcCcHHHHHHccCCC---CCcccc
Q psy11600 221 V-GPNTIDECAKCLTGF---GGQKFM 242 (277)
Q Consensus 221 V-~~~tv~~~~~~gpg~---ggq~F~ 242 (277)
| +.++++.+.++|++. |+..|.
T Consensus 194 I~~~e~i~~~~~~gaD~vvvGSai~~ 219 (244)
T PRK13125 194 LDSPEDARDALSAGADGVVVGTAFIE 219 (244)
T ss_pred cCCHHHHHHHHHcCCCEEEECHHHHH
Confidence 9 999999999999985 666553
No 32
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=99.74 E-value=3.8e-17 Score=141.84 Aligned_cols=188 Identities=18% Similarity=0.215 Sum_probs=144.4
Q ss_pred ccccCcccHHHHHHHHHHcCCCEEEEecccc--ccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHh-HHHHHhcCC
Q psy11600 12 ILNSDLSNLHSESQNLLDSGADYLHLDVMDG--TFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQW-IEPMADANV 88 (277)
Q Consensus 12 ~~~~d~~~l~~~~~~l~~~~~~~~h~DimDg--~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~-i~~l~~ag~ 88 (277)
+++.|..+.++.++.++.. .+. +|+++. +|. .++|++.++.+|+.+|++++++|+|+.++.++ ++.+.++|+
T Consensus 4 ~~a~d~~~~~~~~~~~~~l-~~~--i~~ieig~~~~--~~~g~~~i~~i~~~~~~~~i~~~~~v~~~~~~~~~~~~~aGa 78 (202)
T cd04726 4 QVALDLLDLEEALELAKKV-PDG--VDIIEAGTPLI--KSEGMEAVRALREAFPDKIIVADLKTADAGALEAEMAFKAGA 78 (202)
T ss_pred EEEEcCCCHHHHHHHHHHh-hhc--CCEEEcCCHHH--HHhCHHHHHHHHHHCCCCEEEEEEEeccccHHHHHHHHhcCC
Confidence 4567999999888887776 454 777885 454 67899999999997799999999999999877 788999999
Q ss_pred CeEEEeccCCCCCHHHHHHHHhhCCCcccchhhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCCcccee-eCCCCC
Q psy11600 89 DQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLA-IKPKTP 167 (277)
Q Consensus 89 d~i~~H~e~~d~g~~~i~~i~~~~~~~~d~p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~-i~p~t~ 167 (277)
|++++|.+.... ...++++.+++.|++.++. ++|.|+
T Consensus 79 d~i~~h~~~~~~------------------------------------------~~~~~i~~~~~~g~~~~v~~~~~~t~ 116 (202)
T cd04726 79 DIVTVLGAAPLS------------------------------------------TIKKAVKAAKKYGKEVQVDLIGVEDP 116 (202)
T ss_pred CEEEEEeeCCHH------------------------------------------HHHHHHHHHHHcCCeEEEEEeCCCCH
Confidence 999999876430 3456778888889888886 899999
Q ss_pred HHhHHHHHhhcCceEEEEecCCCCCchh-hhhhhhhHHHHHhhCCCccEEEeCCCCcCcHHHHHHccCCC---CCccccc
Q psy11600 168 VDVIAEYIESADLVLIMTVEPGFGGQKF-MQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKCLTGF---GGQKFMQ 243 (277)
Q Consensus 168 ~~~i~~~i~~~d~vl~mav~Pgt~gq~~-~~~~l~kI~~l~~~~~~~~i~vdGgV~~~tv~~~~~~gpg~---ggq~F~~ 243 (277)
.+....+-..+|++.+ .|++.++.+ .+...++++++++. +++.+.++|||+.+|+.++.++|+++ |+..|..
T Consensus 117 ~e~~~~~~~~~d~v~~---~~~~~~~~~~~~~~~~~i~~~~~~-~~~~i~~~GGI~~~~i~~~~~~Gad~vvvGsai~~~ 192 (202)
T cd04726 117 EKRAKLLKLGVDIVIL---HRGIDAQAAGGWWPEDDLKKVKKL-LGVKVAVAGGITPDTLPEFKKAGADIVIVGRAITGA 192 (202)
T ss_pred HHHHHHHHCCCCEEEE---cCcccccccCCCCCHHHHHHHHhh-cCCCEEEECCcCHHHHHHHHhcCCCEEEEeehhcCC
Confidence 8877633337887554 454444333 45566777777654 57889999999999999999999996 7777764
Q ss_pred -CHHHHHH
Q psy11600 244 -DMMPKVK 250 (277)
Q Consensus 244 -~~~~kI~ 250 (277)
+..+.++
T Consensus 193 ~d~~~~~~ 200 (202)
T cd04726 193 ADPAEAAR 200 (202)
T ss_pred CCHHHHHh
Confidence 4444443
No 33
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=99.66 E-value=8.6e-15 Score=132.63 Aligned_cols=191 Identities=18% Similarity=0.263 Sum_probs=155.5
Q ss_pred ceEeeeccccCcc--cHHHHHHHHHHcCCCEEEEec------cccccc---------cCCCC--CHHHHHHHHhcCCCCe
Q psy11600 6 CMIGPSILNSDLS--NLHSESQNLLDSGADYLHLDV------MDGTFV---------PNLTF--GHPVVKCLRNKIPKAF 66 (277)
Q Consensus 6 ~~~~~s~~~~d~~--~l~~~~~~l~~~~~~~~h~Di------mDg~fv---------p~~~~--g~~~v~~l~~~~~~~~ 66 (277)
..+.|=+.+.|+. ...+.++.+.+.|+|.+=+-+ .||+.+ ..+++ ..+.++++|+..+++|
T Consensus 10 ~~li~y~~aG~P~~~~~~~~~~~l~~~Gad~iElGiPfsDP~aDGpvIq~a~~~al~~G~~~~~~~~~v~~ir~~~~~~p 89 (256)
T TIGR00262 10 GAFIPFVTAGDPTLETSLEIIKTLIEAGADALELGVPFSDPLADGPTIQAADLRALRAGMTPEKCFELLKKVRQKHPNIP 89 (256)
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCC
Confidence 4577888888764 345667788889999988776 555543 11121 3466899997557899
Q ss_pred eeeeeeccCc------HHhHHHHHhcCCCeEEEeccCCCCCHHHHHHHHhhCCCcccchhhhhHHHHhcCCCeEEeecCC
Q psy11600 67 FETHMMVQNP------QQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPMADANVDQYTFHVEP 140 (277)
Q Consensus 67 ~d~Hlmv~~p------~~~i~~l~~ag~d~i~~H~e~~d~g~~~i~~i~~~~~~~~d~p~~~i~~~~~~g~d~it~H~E~ 140 (277)
++ |||+.|| +++++.+.++|++.+.+|.++.+
T Consensus 90 lv-~m~Y~Npi~~~G~e~f~~~~~~aGvdgviipDlp~e----------------------------------------- 127 (256)
T TIGR00262 90 IG-LLTYYNLIFRKGVEEFYAKCKEVGVDGVLVADLPLE----------------------------------------- 127 (256)
T ss_pred EE-EEEeccHHhhhhHHHHHHHHHHcCCCEEEECCCChH-----------------------------------------
Confidence 88 9999999 88999999999999999977654
Q ss_pred CCChHHHHHHHHHhCCccceeeCCCCCHHhHHHHHhhcC-ceEEEEecCCCCCch--hhhhhhhhHHHHHhhCCCccEEE
Q psy11600 141 VDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESAD-LVLIMTVEPGFGGQK--FMQDMMPKVKWLRENYPTLNIEV 217 (277)
Q Consensus 141 ~~~~~~~~~~I~~~g~~~g~~i~p~t~~~~i~~~i~~~d-~vl~mav~Pgt~gq~--~~~~~l~kI~~l~~~~~~~~i~v 217 (277)
......+.+++.|+..+..++|.|+.+.+..+.+..+ ++.+|+++ |+.||+ |.+++.+++++++++. +..+.+
T Consensus 128 --e~~~~~~~~~~~gl~~i~lv~P~T~~eri~~i~~~~~gfiy~vs~~-G~TG~~~~~~~~~~~~i~~lr~~~-~~pi~v 203 (256)
T TIGR00262 128 --ESGDLVEAAKKHGVKPIFLVAPNADDERLKQIAEKSQGFVYLVSRA-GVTGARNRAASALNELVKRLKAYS-AKPVLV 203 (256)
T ss_pred --HHHHHHHHHHHCCCcEEEEECCCCCHHHHHHHHHhCCCCEEEEECC-CCCCCcccCChhHHHHHHHHHhhc-CCCEEE
Confidence 4567888899999999999999999999999999887 99999998 888886 8899999999999864 457999
Q ss_pred eCCCC-cCcHHHHHHccCCC---CCcccc
Q psy11600 218 DGGVG-PNTIDECAKCLTGF---GGQKFM 242 (277)
Q Consensus 218 dGgV~-~~tv~~~~~~gpg~---ggq~F~ 242 (277)
+|||+ .++++.+.++|++. |+..|.
T Consensus 204 gfGI~~~e~~~~~~~~GADgvVvGSaiv~ 232 (256)
T TIGR00262 204 GFGISKPEQVKQAIDAGADGVIVGSAIVK 232 (256)
T ss_pred eCCCCCHHHHHHHHHcCCCEEEECHHHHH
Confidence 99997 99999999999995 555543
No 34
>PRK00230 orotidine 5'-phosphate decarboxylase; Reviewed
Probab=99.58 E-value=7.5e-14 Score=124.58 Aligned_cols=95 Identities=19% Similarity=0.244 Sum_probs=85.5
Q ss_pred eccccCcccHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeee--eccCcHHhHHHHHhcCC
Q psy11600 11 SILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHM--MVQNPQQWIEPMADANV 88 (277)
Q Consensus 11 s~~~~d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hl--mv~~p~~~i~~l~~ag~ 88 (277)
=++++|+.+++++++.+++.|.++.|+||||+.|+ +||++++++||+....+++|+|+ |..+|.++++.+.++|+
T Consensus 5 lilAlD~~~~~~~l~~~~~~~~~~~~ikvg~~~f~---~~G~~~i~~l~~~~~~i~~D~Kl~Di~~t~~~~i~~~~~~ga 81 (230)
T PRK00230 5 LIVALDFPSKEEALAFLDQLDPAVLFVKVGMELFT---AGGPQFVRELKQRGFKVFLDLKLHDIPNTVAKAVRALAKLGV 81 (230)
T ss_pred eEEEcCCCCHHHHHHHHHhcCCcccEEEEcHHHHH---hcCHHHHHHHHhcCCCEEEEeehhhccccHHHHHHHHHHcCC
Confidence 36889999999999999999999999999999998 79999999999854689999999 99999999999999999
Q ss_pred CeEEEeccCCCCCHHHHHHHHhh
Q psy11600 89 DQYTFHVEPVDNVPQVIRQIKEA 111 (277)
Q Consensus 89 d~i~~H~e~~d~g~~~i~~i~~~ 111 (277)
|++|||.++ |..++++..+.
T Consensus 82 d~itvH~~a---g~~~i~~~~~~ 101 (230)
T PRK00230 82 DMVNVHASG---GPRMMKAAREA 101 (230)
T ss_pred CEEEEcccC---CHHHHHHHHHH
Confidence 999999864 55677777664
No 35
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=99.56 E-value=3.6e-14 Score=121.32 Aligned_cols=187 Identities=15% Similarity=0.107 Sum_probs=136.6
Q ss_pred eEeeeccccCcccHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhc
Q psy11600 7 MIGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADA 86 (277)
Q Consensus 7 ~~~~s~~~~d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~a 86 (277)
.|+||.++ ..++.+.++.+.+.|++++|+|++|+++.++++ .++++++. ++ .+++|+|+.+ +++.+.++
T Consensus 3 ~it~~~~~--~~~~~~~l~~l~~~g~~~i~lr~~~~~~~~~~~----~~~~i~~~-~~-~~~~~l~~~~---~~~~a~~~ 71 (196)
T cd00564 3 LITDRRLD--GEDLLEVVEAALKGGVTLVQLREKDLSARELLE----LARALREL-CR-KYGVPLIIND---RVDLALAV 71 (196)
T ss_pred EEeCCccc--cchHHHHHHHHHhcCCCEEEEeCCCCCHHHHHH----HHHHHHHH-HH-HhCCeEEEeC---hHHHHHHc
Confidence 47888776 457889999999999999999999999998864 46777764 33 5789999975 46778889
Q ss_pred CCCeEEEeccCCCCCHHHHHHHHhhCCCcccchhhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCCccceeeCCCC
Q psy11600 87 NVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKT 166 (277)
Q Consensus 87 g~d~i~~H~e~~d~g~~~i~~i~~~~~~~~d~p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~i~p~t 166 (277)
|+|.+ |++..+ ......+.++..+.+.|+. ..+
T Consensus 72 g~~~v--h~~~~~-------------------------------------------~~~~~~~~~~~~~~~~g~~--~~t 104 (196)
T cd00564 72 GADGV--HLGQDD-------------------------------------------LPVAEARALLGPDLIIGVS--THS 104 (196)
T ss_pred CCCEE--ecCccc-------------------------------------------CCHHHHHHHcCCCCEEEee--CCC
Confidence 99977 877544 1222233333334444444 344
Q ss_pred CHHhHHHHHh-hcCceEEEEecCCCCCchh-hhhhhhhHHHHHhhCCCccEEEeCCCCcCcHHHHHHccCCC---CCccc
Q psy11600 167 PVDVIAEYIE-SADLVLIMTVEPGFGGQKF-MQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKCLTGF---GGQKF 241 (277)
Q Consensus 167 ~~~~i~~~i~-~~d~vl~mav~Pgt~gq~~-~~~~l~kI~~l~~~~~~~~i~vdGgV~~~tv~~~~~~gpg~---ggq~F 241 (277)
+ +.+..+.. .+|++.++.+.|+.+.+.+ .+..+++++++++. .++.+.++||++..|+.++.++|+++ |+..|
T Consensus 105 ~-~~~~~~~~~g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~pv~a~GGi~~~~i~~~~~~Ga~~i~~g~~i~ 182 (196)
T cd00564 105 L-EEALRAEELGADYVGFGPVFPTPTKPGAGPPLGLELLREIAEL-VEIPVVAIGGITPENAAEVLAAGADGVAVISAIT 182 (196)
T ss_pred H-HHHHHHhhcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHh-CCCCEEEECCCCHHHHHHHHHcCCCEEEEehHhh
Confidence 3 44444544 5899999989888776665 56667778877765 56889999999999999999999986 67777
Q ss_pred c-cCHHHHHHHHH
Q psy11600 242 M-QDMMPKVKWLR 253 (277)
Q Consensus 242 ~-~~~~~kI~~l~ 253 (277)
. ++..+.+++++
T Consensus 183 ~~~~~~~~~~~l~ 195 (196)
T cd00564 183 GADDPAAAARELL 195 (196)
T ss_pred cCCCHHHHHHHHh
Confidence 6 56777777664
No 36
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=99.54 E-value=2.5e-13 Score=122.07 Aligned_cols=163 Identities=17% Similarity=0.200 Sum_probs=122.0
Q ss_pred eeeeeeccCcH-----HhHHHHHhcCCCeEEEecc------CCCC-------------------CHHHHHHHHhhCCCc-
Q psy11600 67 FETHMMVQNPQ-----QWIEPMADANVDQYTFHVE------PVDN-------------------VPQVIRQIKEAGMKV- 115 (277)
Q Consensus 67 ~d~Hlmv~~p~-----~~i~~l~~ag~d~i~~H~e------~~d~-------------------g~~~i~~i~~~~~~~- 115 (277)
+-.|++..+|. ++++.+.++|+|++ |++ .+|| ++++++++|+.+..|
T Consensus 2 li~y~~~G~P~~~~~~~~~~~l~~~Gad~i--el~iPfsdPv~DG~~I~~a~~~al~~g~~~~~~~~~~~~vr~~~~~pv 79 (242)
T cd04724 2 LIPYITAGDPDLETTLEILKALVEAGADII--ELGIPFSDPVADGPVIQAASERALANGVTLKDVLELVKEIRKKNTIPI 79 (242)
T ss_pred cEEEEeCCCCCHHHHHHHHHHHHHCCCCEE--EECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCCE
Confidence 45788888876 45888999999999 888 6776 477888998876554
Q ss_pred ccc----h------hhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCCccceeeCCCCCHHhHHHHHhhcCceEEEE
Q psy11600 116 GQV----L------QDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIMT 185 (277)
Q Consensus 116 ~d~----p------~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~i~p~t~~~~i~~~i~~~d~vl~ma 185 (277)
+.| | ++|++.++++|++.+++|-. ..++..+++ +.++..++..++.
T Consensus 80 ~lm~y~n~~~~~G~~~fi~~~~~aG~~giiipDl---~~ee~~~~~---------------------~~~~~~g~~~i~~ 135 (242)
T cd04724 80 VLMGYYNPILQYGLERFLRDAKEAGVDGLIIPDL---PPEEAEEFR---------------------EAAKEYGLDLIFL 135 (242)
T ss_pred EEEEecCHHHHhCHHHHHHHHHHCCCcEEEECCC---CHHHHHHHH---------------------HHHHHcCCcEEEE
Confidence 433 4 88999999999999999976 655443333 4567778888899
Q ss_pred ecCCCCCchhhhhhhhhHHHHHhhCCCccEEEeCCCCcCcHHHHHHccCCCCCcc-cccCHHHHHHHHHhhCCCCeEEEe
Q psy11600 186 VEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKCLTGFGGQK-FMQDMMPKVKWLRENYPTLNIEVD 264 (277)
Q Consensus 186 v~Pgt~gq~~~~~~l~kI~~l~~~~~~~~i~vdGgV~~~tv~~~~~~gpg~ggq~-F~~~~~~kI~~l~~~~~~~~I~VD 264 (277)
++|.|+. ++++.+.+... +... .+|+ .|++|+|. |.++..++|+++|+. .++.|.||
T Consensus 136 i~P~T~~--------~~i~~i~~~~~--~~vy-----~~s~------~g~tG~~~~~~~~~~~~i~~lr~~-~~~pI~vg 193 (242)
T cd04724 136 VAPTTPD--------ERIKKIAELAS--GFIY-----YVSR------TGVTGARTELPDDLKELIKRIRKY-TDLPIAVG 193 (242)
T ss_pred eCCCCCH--------HHHHHHHhhCC--CCEE-----EEeC------CCCCCCccCCChhHHHHHHHHHhc-CCCcEEEE
Confidence 9999972 34555544222 2222 2333 59999988 888999999999986 47889999
Q ss_pred CCCCc-cCHHHhhC
Q psy11600 265 GGVGP-NTIDECAK 277 (277)
Q Consensus 265 GGI~~-~~~~~~~~ 277 (277)
||||. ++++++.+
T Consensus 194 gGI~~~e~~~~~~~ 207 (242)
T cd04724 194 FGISTPEQAAEVAK 207 (242)
T ss_pred ccCCCHHHHHHHHc
Confidence 99995 58888753
No 37
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=99.52 E-value=2.3e-13 Score=118.54 Aligned_cols=160 Identities=25% Similarity=0.388 Sum_probs=113.8
Q ss_pred eeeeccCcH---HhHHHHHhcCCCeEEEeccCCCC--------CHHHHHHHHhhCCCcc--cc----hhhhhHHHHhcCC
Q psy11600 69 THMMVQNPQ---QWIEPMADANVDQYTFHVEPVDN--------VPQVIRQIKEAGMKVG--QV----LQDWIEPMADANV 131 (277)
Q Consensus 69 ~Hlmv~~p~---~~i~~l~~ag~d~i~~H~e~~d~--------g~~~i~~i~~~~~~~~--d~----p~~~i~~~~~~g~ 131 (277)
+.++..|+. +.++.+.++|+|++ |++++|| +++.++++|+.+..++ ++ +.+|++.+.++|+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~g~d~i--~~~~~Dg~~~~~~~~~~~~v~~i~~~~~~~v~v~lm~~~~~~~~~~~~~~ga 80 (210)
T TIGR01163 3 PSILSADFARLGEEVKAVEEAGADWI--HVDVMDGHFVPNLTFGPPVLEALRKYTDLPIDVHLMVENPDRYIEDFAEAGA 80 (210)
T ss_pred chhhcCCHHHHHHHHHHHHHcCCCEE--EEcCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeeeCCHHHHHHHHHHcCC
Confidence 445666644 56888899999999 7776665 8999999998765553 22 8899999999999
Q ss_pred CeEEeecCCCCChHHHHHHHHHhCCccceeeCCCCCHHhHHHHHhhcCceEEEEecCCCCCchhhhhhhhhHHHHHhhCC
Q psy11600 132 DQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYP 211 (277)
Q Consensus 132 d~it~H~E~~~~~~~~~~~I~~~g~~~g~~i~p~t~~~~i~~~i~~~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~~ 211 (277)
|.+++|.+ ......+.++. ++..+...+++++|.++ .+.++++..
T Consensus 81 dgv~vh~~---~~~~~~~~~~~---------------------~~~~g~~~~~~~~~~t~-----------~e~~~~~~~ 125 (210)
T TIGR01163 81 DIITVHPE---ASEHIHRLLQL---------------------IKDLGAKAGIVLNPATP-----------LEFLEYVLP 125 (210)
T ss_pred CEEEEccC---CchhHHHHHHH---------------------HHHcCCcEEEEECCCCC-----------HHHHHHHHh
Confidence 99999998 76655555443 34445555677788765 233333322
Q ss_pred CccEEEeCCCCcCcHHHHHHccCCCCCcccccCHHHHHHHHHhhC----CCCeEEEeCCCCccCHHHhh
Q psy11600 212 TLNIEVDGGVGPNTIDECAKCLTGFGGQKFMQDMMPKVKWLRENY----PTLNIEVDGGVGPNTIDECA 276 (277)
Q Consensus 212 ~~~i~vdGgV~~~tv~~~~~~gpg~ggq~F~~~~~~kI~~l~~~~----~~~~I~VDGGI~~~~~~~~~ 276 (277)
..+...-+++ .||.+|+.|.+..++++++++++. +.+.|.++||||++|++++.
T Consensus 126 ~~d~i~~~~~-----------~~g~tg~~~~~~~~~~i~~i~~~~~~~~~~~~i~v~GGI~~env~~l~ 183 (210)
T TIGR01163 126 DVDLVLLMSV-----------NPGFGGQKFIPDTLEKIREVRKMIDENGLSILIEVDGGVNDDNARELA 183 (210)
T ss_pred hCCEEEEEEE-----------cCCCCcccccHHHHHHHHHHHHHHHhcCCCceEEEECCcCHHHHHHHH
Confidence 3344332333 378888889888889988887643 34679999999999998864
No 38
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=99.50 E-value=4.6e-13 Score=129.61 Aligned_cols=190 Identities=22% Similarity=0.302 Sum_probs=147.3
Q ss_pred ccccCcccHHHHHHHHHH---cCCCEEEEeccccccccCC-CCCHHHHHHHHhcCC--CCeeeeeeeccCcHHhHHHHHh
Q psy11600 12 ILNSDLSNLHSESQNLLD---SGADYLHLDVMDGTFVPNL-TFGHPVVKCLRNKIP--KAFFETHMMVQNPQQWIEPMAD 85 (277)
Q Consensus 12 ~~~~d~~~l~~~~~~l~~---~~~~~~h~DimDg~fvp~~-~~g~~~v~~l~~~~~--~~~~d~Hlmv~~p~~~i~~l~~ 85 (277)
++++|+.++++.++.+++ .|++++|+. + |+. .++.+.++++++.++ .+..|+|+|.. |..+++.+.+
T Consensus 7 ~~alD~~~~~~~~~~~~~~~~~Gv~~ie~g-----~-p~~~~~~~~~i~~l~~~~~~~~ii~D~kl~d~-g~~~v~~a~~ 79 (430)
T PRK07028 7 QVALDLLELDRAVEIAKEAVAGGADWIEAG-----T-PLIKSEGMNAIRTLRKNFPDHTIVADMKTMDT-GAIEVEMAAK 79 (430)
T ss_pred EEEeccCCHHHHHHHHHHHHhcCCcEEEeC-----C-HHHHHhhHHHHHHHHHHCCCCEEEEEeeeccc-hHHHHHHHHH
Confidence 468999999999998888 899999873 2 444 679999999998765 46779999998 9999999999
Q ss_pred cCCCeEEEeccCCCCCHHHHHHHHhhCCCcccchhhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCCcccee-eCC
Q psy11600 86 ANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLA-IKP 164 (277)
Q Consensus 86 ag~d~i~~H~e~~d~g~~~i~~i~~~~~~~~d~p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~-i~p 164 (277)
+|+|.+|+|.+..+. +....++.+++.|+..+++ +++
T Consensus 80 aGAdgV~v~g~~~~~------------------------------------------~~~~~i~~a~~~G~~~~~g~~s~ 117 (430)
T PRK07028 80 AGADIVCILGLADDS------------------------------------------TIEDAVRAARKYGVRLMADLINV 117 (430)
T ss_pred cCCCEEEEecCCChH------------------------------------------HHHHHHHHHHHcCCEEEEEecCC
Confidence 999999888653320 2345667778888888875 677
Q ss_pred CCCHHhHHHHHhh-cCceEEEEecCCCCCchhhhhhhhhHHHHHhhCCCccEEEeCCCCcCcHHHHHHccCCC---CCcc
Q psy11600 165 KTPVDVIAEYIES-ADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKCLTGF---GGQK 240 (277)
Q Consensus 165 ~t~~~~i~~~i~~-~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~~~~~i~vdGgV~~~tv~~~~~~gpg~---ggq~ 240 (277)
.++++.+..+.+. +|++ .+.||+++|.+....++.++++++..+ +.+.++|||+.+++.++.++|++. |+..
T Consensus 118 ~t~~e~~~~a~~~GaD~I---~~~pg~~~~~~~~~~~~~l~~l~~~~~-iPI~a~GGI~~~n~~~~l~aGAdgv~vGsaI 193 (430)
T PRK07028 118 PDPVKRAVELEELGVDYI---NVHVGIDQQMLGKDPLELLKEVSEEVS-IPIAVAGGLDAETAAKAVAAGADIVIVGGNI 193 (430)
T ss_pred CCHHHHHHHHHhcCCCEE---EEEeccchhhcCCChHHHHHHHHhhCC-CcEEEECCCCHHHHHHHHHcCCCEEEEChHH
Confidence 8888777666654 7776 456888777666555677777766433 789999999999999999999995 7777
Q ss_pred ccc-CHHHHHHHHHh
Q psy11600 241 FMQ-DMMPKVKWLRE 254 (277)
Q Consensus 241 F~~-~~~~kI~~l~~ 254 (277)
|.. +..+.++.+++
T Consensus 194 ~~~~d~~~~~~~l~~ 208 (430)
T PRK07028 194 IKSADVTEAARKIRE 208 (430)
T ss_pred cCCCCHHHHHHHHHH
Confidence 763 56666666665
No 39
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=99.50 E-value=5.7e-13 Score=117.07 Aligned_cols=163 Identities=27% Similarity=0.447 Sum_probs=117.9
Q ss_pred eeeeeeeccCcHH---hHHHHHhcCCCeEEEeccCCCC--------CHHHHHHHHhhCCCccc---c---hhhhhHHHHh
Q psy11600 66 FFETHMMVQNPQQ---WIEPMADANVDQYTFHVEPVDN--------VPQVIRQIKEAGMKVGQ---V---LQDWIEPMAD 128 (277)
Q Consensus 66 ~~d~Hlmv~~p~~---~i~~l~~ag~d~i~~H~e~~d~--------g~~~i~~i~~~~~~~~d---~---p~~~i~~~~~ 128 (277)
.+.+.++..|+.. .++.+.++|++++ |++.+|+ +.+.++++++.+..+.+ + |.+|++.+.+
T Consensus 5 ~~~~s~~~~~~~~~~~~~~~~~~~G~~~i--~l~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~v~l~v~d~~~~i~~~~~ 82 (220)
T PRK05581 5 LIAPSILSADFARLGEEVKAVEAAGADWI--HVDVMDGHFVPNLTIGPPVVEAIRKVTKLPLDVHLMVENPDRYVPDFAK 82 (220)
T ss_pred EEEcchhcCCHHHHHHHHHHHHHcCCCEE--EEeCccCCcCCCcCcCHHHHHHHHhcCCCcEEEEeeeCCHHHHHHHHHH
Confidence 3677888888655 4778888999999 7777665 68889999987643322 2 7889999999
Q ss_pred cCCCeEEeecCCCCChHHHHHHHHHhCCccceeeCCCCCHHhHHHHHhhcCceEEEEecCCCCCchhhhhhhhhHHHHHh
Q psy11600 129 ANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIMTVEPGFGGQKFMQDMMPKVKWLRE 208 (277)
Q Consensus 129 ~g~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~i~p~t~~~~i~~~i~~~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~ 208 (277)
+|+|.+++|.+ ......+.++ .++..+..++++++|.++ .+.++.
T Consensus 83 ~g~d~v~vh~~---~~~~~~~~~~---------------------~~~~~~~~~g~~~~~~t~-----------~e~~~~ 127 (220)
T PRK05581 83 AGADIITFHVE---ASEHIHRLLQ---------------------LIKSAGIKAGLVLNPATP-----------LEPLED 127 (220)
T ss_pred cCCCEEEEeec---cchhHHHHHH---------------------HHHHcCCEEEEEECCCCC-----------HHHHHH
Confidence 99999999998 6555544443 455667777788888765 222333
Q ss_pred hCCCccEEEeCCCCcCcHHHHHHccCCCCCcccccCHHHHHHHHHhhCC----CCeEEEeCCCCccCHHHhh
Q psy11600 209 NYPTLNIEVDGGVGPNTIDECAKCLTGFGGQKFMQDMMPKVKWLRENYP----TLNIEVDGGVGPNTIDECA 276 (277)
Q Consensus 209 ~~~~~~i~vdGgV~~~tv~~~~~~gpg~ggq~F~~~~~~kI~~l~~~~~----~~~I~VDGGI~~~~~~~~~ 276 (277)
+....+...-|++ .||.+|+.|.+..+++++++++..+ ...|.+|||||++|++++.
T Consensus 128 ~~~~~d~i~~~~~-----------~~g~tg~~~~~~~~~~i~~~~~~~~~~~~~~~i~v~GGI~~~nv~~l~ 188 (220)
T PRK05581 128 VLDLLDLVLLMSV-----------NPGFGGQKFIPEVLEKIRELRKLIDERGLDILIEVDGGINADNIKECA 188 (220)
T ss_pred HHhhCCEEEEEEE-----------CCCCCcccccHHHHHHHHHHHHHHHhcCCCceEEEECCCCHHHHHHHH
Confidence 3223343332333 3788889999989999998887543 2668999999999998875
No 40
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=99.49 E-value=3.8e-13 Score=117.34 Aligned_cols=193 Identities=15% Similarity=0.122 Sum_probs=130.2
Q ss_pred ceEeeeccccCcccHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHh
Q psy11600 6 CMIGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMAD 85 (277)
Q Consensus 6 ~~~~~s~~~~d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ 85 (277)
..|+||.++.+ .++.+.++.+.+.|++++|+|++|....+.+ ..++.+++. . ...++|+|+. ++++.+.+
T Consensus 10 ~~it~~~~~~~-~~~~~~~~~~~~~gv~~v~lr~~~~~~~~~~----~~~~~~~~~-~-~~~~~~l~~~---~~~~~a~~ 79 (212)
T PRK00043 10 YLITDSRDDSG-RDLLEVVEAALEGGVTLVQLREKGLDTRERL----ELARALKEL-C-RRYGVPLIVN---DRVDLALA 79 (212)
T ss_pred EEEECCccccc-ccHHHHHHHHHhcCCCEEEEeCCCCCHHHHH----HHHHHHHHH-H-HHhCCeEEEe---ChHHHHHH
Confidence 34889988655 6788999999999999999999995433221 123333322 1 1467888885 56788889
Q ss_pred cCCCeEEEeccCCCCCHHHHHHHHhhCCCcccchhhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCCccceeeCCC
Q psy11600 86 ANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPK 165 (277)
Q Consensus 86 ag~d~i~~H~e~~d~g~~~i~~i~~~~~~~~d~p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~i~p~ 165 (277)
+|+|.+|+|.+ + ......+.++..+.+.| +...
T Consensus 80 ~gad~vh~~~~--~-------------------------------------------~~~~~~~~~~~~~~~~g--~~~~ 112 (212)
T PRK00043 80 VGADGVHLGQD--D-------------------------------------------LPVADARALLGPDAIIG--LSTH 112 (212)
T ss_pred cCCCEEecCcc--c-------------------------------------------CCHHHHHHHcCCCCEEE--EeCC
Confidence 99999855443 3 11122233333343334 3344
Q ss_pred CCHHhHHHHHhhcCceEEEEecCCCCCchhhhhh-hhhHHHHHhhCCCccEEEeCCCCcCcHHHHHHccCCC---CCccc
Q psy11600 166 TPVDVIAEYIESADLVLIMTVEPGFGGQKFMQDM-MPKVKWLRENYPTLNIEVDGGVGPNTIDECAKCLTGF---GGQKF 241 (277)
Q Consensus 166 t~~~~i~~~i~~~d~vl~mav~Pgt~gq~~~~~~-l~kI~~l~~~~~~~~i~vdGgV~~~tv~~~~~~gpg~---ggq~F 241 (277)
|+.+..+.+...+|++.+..+.|+...+...... +++++++++..+++.+.++|||+.+|+..+.++|+++ |+..|
T Consensus 113 t~~e~~~a~~~gaD~v~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~a~GGI~~~~i~~~~~~Ga~gv~~gs~i~ 192 (212)
T PRK00043 113 TLEEAAAALAAGADYVGVGPIFPTPTKKDAKAPQGLEGLREIRAAVGDIPIVAIGGITPENAPEVLEAGADGVAVVSAIT 192 (212)
T ss_pred CHHHHHHHhHcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhcCCCCEEEECCcCHHHHHHHHHcCCCEEEEeHHhh
Confidence 5444444455678888877778876544443333 6788888877767999999999999999999999996 66666
Q ss_pred c-cCHHHHHHHHHhh
Q psy11600 242 M-QDMMPKVKWLREN 255 (277)
Q Consensus 242 ~-~~~~~kI~~l~~~ 255 (277)
. ++..+.++++++.
T Consensus 193 ~~~d~~~~~~~l~~~ 207 (212)
T PRK00043 193 GAEDPEAAARALLAA 207 (212)
T ss_pred cCCCHHHHHHHHHHH
Confidence 5 5677777777653
No 41
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=99.44 E-value=2e-12 Score=112.97 Aligned_cols=190 Identities=21% Similarity=0.262 Sum_probs=141.7
Q ss_pred cccCcccHHHHHHHHHHcCCCEEEEeccc--cccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHh-HHHHHhcCCC
Q psy11600 13 LNSDLSNLHSESQNLLDSGADYLHLDVMD--GTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQW-IEPMADANVD 89 (277)
Q Consensus 13 ~~~d~~~l~~~~~~l~~~~~~~~h~DimD--g~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~-i~~l~~ag~d 89 (277)
++.|..+|++.++.+++. .++ +||.+ ++.+ .++|.+.|+.||+.||+.++.++++++|-+.+ .+...++|+|
T Consensus 8 vALD~~~l~~Ai~~a~~v-~~~--~diiEvGTpLi--k~eG~~aV~~lr~~~pd~~IvAD~Kt~D~G~~e~~ma~~aGAd 82 (217)
T COG0269 8 VALDLLDLEEAIEIAEEV-ADY--VDIIEVGTPLI--KAEGMRAVRALRELFPDKIIVADLKTADAGAIEARMAFEAGAD 82 (217)
T ss_pred eeecccCHHHHHHHHHHh-hhc--ceEEEeCcHHH--HHhhHHHHHHHHHHCCCCeEEeeeeecchhHHHHHHHHHcCCC
Confidence 468999999999999987 777 99999 5566 45999999999999999999999999999986 8888999999
Q ss_pred eEEEeccCCCC-CHHHHHHHHhhCCC-cccc-----hhhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCCccceee
Q psy11600 90 QYTFHVEPVDN-VPQVIRQIKEAGMK-VGQV-----LQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAI 162 (277)
Q Consensus 90 ~i~~H~e~~d~-g~~~i~~i~~~~~~-~~d~-----p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~i 162 (277)
|+|+-.-+.+. -...++..++.+.. .+|+ |++..+++.++|+|++.+|.. ... +..| .
T Consensus 83 ~~tV~g~A~~~TI~~~i~~A~~~~~~v~iDl~~~~~~~~~~~~l~~~gvd~~~~H~g----~D~-----q~~G------~ 147 (217)
T COG0269 83 WVTVLGAADDATIKKAIKVAKEYGKEVQIDLIGVWDPEQRAKWLKELGVDQVILHRG----RDA-----QAAG------K 147 (217)
T ss_pred EEEEEecCCHHHHHHHHHHHHHcCCeEEEEeecCCCHHHHHHHHHHhCCCEEEEEec----ccH-----hhcC------C
Confidence 99987544331 33445555566644 4555 788888898999999999974 211 1111 1
Q ss_pred CCCCCHHhHHHHHhhcCceEEEEecCCCCCchhhhhhhhhHHHHHhhCCCccEEEeCCCCcCcHHHHHHccCCC---CCc
Q psy11600 163 KPKTPVDVIAEYIESADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKCLTGF---GGQ 239 (277)
Q Consensus 163 ~p~t~~~~i~~~i~~~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~~~~~i~vdGgV~~~tv~~~~~~gpg~---ggq 239 (277)
+|+ .+.+++++++.+ +.+.+.|.||+++++++.+...||.. |+.
T Consensus 148 ------------------------~~~-------~~~l~~ik~~~~--~g~~vAVaGGI~~~~i~~~~~~~~~ivIvGra 194 (217)
T COG0269 148 ------------------------SWG-------EDDLEKIKKLSD--LGAKVAVAGGITPEDIPLFKGIGADIVIVGRA 194 (217)
T ss_pred ------------------------Ccc-------HHHHHHHHHhhc--cCceEEEecCCCHHHHHHHhcCCCCEEEECch
Confidence 222 122334444432 23889999999999999999999995 666
Q ss_pred ccc-cCHHHHHHHHHhh
Q psy11600 240 KFM-QDMMPKVKWLREN 255 (277)
Q Consensus 240 ~F~-~~~~~kI~~l~~~ 255 (277)
.-. .+..+..+++++.
T Consensus 195 It~a~dp~~~a~~~~~~ 211 (217)
T COG0269 195 ITGAKDPAEAARKFKEE 211 (217)
T ss_pred hcCCCCHHHHHHHHHHH
Confidence 665 4667777777654
No 42
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=99.44 E-value=3.5e-12 Score=114.70 Aligned_cols=163 Identities=14% Similarity=0.206 Sum_probs=114.9
Q ss_pred eeeeeeeccCcHH-----hHHHHHhcCCCeEEEec---cCC-CC--------------CHHHHHHHHhhCCCccc-----
Q psy11600 66 FFETHMMVQNPQQ-----WIEPMADANVDQYTFHV---EPV-DN--------------VPQVIRQIKEAGMKVGQ----- 117 (277)
Q Consensus 66 ~~d~Hlmv~~p~~-----~i~~l~~ag~d~i~~H~---e~~-d~--------------g~~~i~~i~~~~~~~~d----- 117 (277)
.+-.+++..+|.. .++.+.++ +|.+-+-+ |+. || .+++++++|+.+..|+.
T Consensus 5 ~~i~y~~~G~p~~~~~~~~~~~l~~~-ad~iElgip~sdp~adG~~i~~~~~~a~~~g~~~~v~~vr~~~~~Pl~lM~y~ 83 (244)
T PRK13125 5 GLVVYLTAGYPNVESFKEFIIGLVEL-VDILELGIPPKYPKYDGPVIRKSHRKVKGLDIWPLLEEVRKDVSVPIILMTYL 83 (244)
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHhh-CCEEEECCCCCCCCCCCHHHHHHHHHHHHcCcHHHHHHHhccCCCCEEEEEec
Confidence 3677888887544 35556666 88875443 221 33 12588999987766642
Q ss_pred -----chhhhhHHHHhcCCCeEEee---cCCCCChHHHHHHHHHhCCccceeeCCCCCHHhHHHHHhhcCceEEEEecCC
Q psy11600 118 -----VLQDWIEPMADANVDQYTFH---VEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIMTVEPG 189 (277)
Q Consensus 118 -----~p~~~i~~~~~~g~d~it~H---~E~~~~~~~~~~~I~~~g~~~g~~i~p~t~~~~i~~~i~~~d~vl~mav~Pg 189 (277)
-|++|++.+.++|+|.+++| +| +..+..++++ .++..++..+++++|.
T Consensus 84 n~~~~~~~~~i~~~~~~Gadgvii~dlp~e---~~~~~~~~~~---------------------~~~~~Gl~~~~~v~p~ 139 (244)
T PRK13125 84 EDYVDSLDNFLNMARDVGADGVLFPDLLID---YPDDLEKYVE---------------------IIKNKGLKPVFFTSPK 139 (244)
T ss_pred chhhhCHHHHHHHHHHcCCCEEEECCCCCC---cHHHHHHHHH---------------------HHHHcCCCEEEEECCC
Confidence 18999999999999999999 56 6666555554 4567777778999999
Q ss_pred CCCchhhhhhhhhHHHHHhhCCCccEEEeCCCCcCcHHHHHHccCCCCCcccccCHHHHHHHHHhhCCCCeEEEeCCC-C
Q psy11600 190 FGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKCLTGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGV-G 268 (277)
Q Consensus 190 t~gq~~~~~~l~kI~~l~~~~~~~~i~vdGgV~~~tv~~~~~~gpg~ggq~F~~~~~~kI~~l~~~~~~~~I~VDGGI-~ 268 (277)
|+. +.++.+.+..+.+ +-+|+ +||+|+ .|.++..++++++|+..++..|+||||| |
T Consensus 140 T~~--------e~l~~~~~~~~~~---l~msv-----------~~~~g~-~~~~~~~~~i~~lr~~~~~~~i~v~gGI~~ 196 (244)
T PRK13125 140 FPD--------LLIHRLSKLSPLF---IYYGL-----------RPATGV-PLPVSVERNIKRVRNLVGNKYLVVGFGLDS 196 (244)
T ss_pred CCH--------HHHHHHHHhCCCE---EEEEe-----------CCCCCC-CchHHHHHHHHHHHHhcCCCCEEEeCCcCC
Confidence 972 2344433333322 22233 489865 7999999999999998766679999999 8
Q ss_pred ccCHHHhh
Q psy11600 269 PNTIDECA 276 (277)
Q Consensus 269 ~~~~~~~~ 276 (277)
+++++++.
T Consensus 197 ~e~i~~~~ 204 (244)
T PRK13125 197 PEDARDAL 204 (244)
T ss_pred HHHHHHHH
Confidence 99998864
No 43
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=99.36 E-value=2.1e-11 Score=105.99 Aligned_cols=161 Identities=27% Similarity=0.426 Sum_probs=111.2
Q ss_pred eeeeeccCcHH---hHHHHHhcCCCeEEEeccCCCC--------CHHHHHHHHhhCCCccc--c----hhhhhHHHHhcC
Q psy11600 68 ETHMMVQNPQQ---WIEPMADANVDQYTFHVEPVDN--------VPQVIRQIKEAGMKVGQ--V----LQDWIEPMADAN 130 (277)
Q Consensus 68 d~Hlmv~~p~~---~i~~l~~ag~d~i~~H~e~~d~--------g~~~i~~i~~~~~~~~d--~----p~~~i~~~~~~g 130 (277)
++.++..|+.+ .++.+.++|++++ |++.+|+ +++.++++++.+..+.+ + |.++++.+.++|
T Consensus 3 ~~~~~~~d~~~~~~~~~~~~~~G~~~i--~l~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~v~l~~~d~~~~~~~~~~~g 80 (211)
T cd00429 3 APSILSADFANLGEELKRLEEAGADWI--HIDVMDGHFVPNLTFGPPVVKALRKHTDLPLDVHLMVENPERYIEAFAKAG 80 (211)
T ss_pred eeeeecCCHHHHHHHHHHHHHcCCCEE--EEecccCCCCCccccCHHHHHHHHhhCCCcEEEEeeeCCHHHHHHHHHHcC
Confidence 44455555444 5888888999999 6655553 57899999987633332 2 678999999999
Q ss_pred CCeEEeecCCCCChHHHHHHHHHhCCccceeeCCCCCHHhHHHHHhhcCceEEEEecCCCCCchhhhhhhhhHHHHHhhC
Q psy11600 131 VDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENY 210 (277)
Q Consensus 131 ~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~i~p~t~~~~i~~~i~~~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~ 210 (277)
+|.+++|.+ ......+.++ .++..+..+++++.|.++. +.++.+ .
T Consensus 81 ~dgv~vh~~---~~~~~~~~~~---------------------~~~~~~~~~g~~~~~~~~~--------~~~~~~---~ 125 (211)
T cd00429 81 ADIITFHAE---ATDHLHRTIQ---------------------LIKELGMKAGVALNPGTPV--------EVLEPY---L 125 (211)
T ss_pred CCEEEECcc---chhhHHHHHH---------------------HHHHCCCeEEEEecCCCCH--------HHHHHH---H
Confidence 999999998 6544444443 3455677777888876641 122222 2
Q ss_pred CCccEEEeCCCCcCcHHHHHHccCCCCCcccccCHHHHHHHHHhhCC----CCeEEEeCCCCccCHHHhh
Q psy11600 211 PTLNIEVDGGVGPNTIDECAKCLTGFGGQKFMQDMMPKVKWLRENYP----TLNIEVDGGVGPNTIDECA 276 (277)
Q Consensus 211 ~~~~i~vdGgV~~~tv~~~~~~gpg~ggq~F~~~~~~kI~~l~~~~~----~~~I~VDGGI~~~~~~~~~ 276 (277)
...+...-|++. ||.+|+.|.+...++++++++..+ +..+.++||||++|++++.
T Consensus 126 ~~~d~i~~~~~~-----------~g~tg~~~~~~~~~~i~~~~~~~~~~~~~~pi~v~GGI~~env~~~~ 184 (211)
T cd00429 126 DEVDLVLVMSVN-----------PGFGGQKFIPEVLEKIRKLRELIPENNLNLLIEVDGGINLETIPLLA 184 (211)
T ss_pred hhCCEEEEEEEC-----------CCCCCcccCHHHHHHHHHHHHHHHhcCCCeEEEEECCCCHHHHHHHH
Confidence 223444434443 677778888888888888887543 4779999999999998875
No 44
>PRK13813 orotidine 5'-phosphate decarboxylase; Provisional
Probab=99.34 E-value=2.4e-11 Score=106.85 Aligned_cols=158 Identities=13% Similarity=0.120 Sum_probs=108.9
Q ss_pred eeccCcHHhHHHHHhcC--CCeEEEeccC-CCCCHHHHHHHHhhCCCcc-----cc---hhhhhHHHHhcCCCeEEeecC
Q psy11600 71 MMVQNPQQWIEPMADAN--VDQYTFHVEP-VDNVPQVIRQIKEAGMKVG-----QV---LQDWIEPMADANVDQYTFHVE 139 (277)
Q Consensus 71 lmv~~p~~~i~~l~~ag--~d~i~~H~e~-~d~g~~~i~~i~~~~~~~~-----d~---p~~~i~~~~~~g~d~it~H~E 139 (277)
|=+.+.++-++.+.+.+ .+++-++... .++|+++++++|+.+..+. |+ +..+++.++++|||++|||+|
T Consensus 10 lD~~~~~~~~~~~~~~~~~~~~vk~g~~l~~~~G~~~v~~ir~~~~i~~D~k~~di~~~~~~~~~~~~~~gad~vtvh~e 89 (215)
T PRK13813 10 LDVTDRERALKIAEELDDYVDAIKVGWPLVLASGLGIIEELKRYAPVIADLKVADIPNTNRLICEAVFEAGAWGIIVHGF 89 (215)
T ss_pred eCCCCHHHHHHHHHhccccCCEEEEcHHHHHhhCHHHHHHHHhcCCEEEEeeccccHHHHHHHHHHHHhCCCCEEEEcCc
Confidence 33445555555554442 3455555443 3569999999999885553 33 566779999999999999999
Q ss_pred CCCChHH-HHHHHHHhCCccceeeCCCCCHHhHHHHHhhcCceEEEEecCCCCCchhhhhhhhhHHHHHhhCCCccEEEe
Q psy11600 140 PVDNVPQ-VIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVD 218 (277)
Q Consensus 140 ~~~~~~~-~~~~I~~~g~~~g~~i~p~t~~~~i~~~i~~~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~~~~~i~vd 218 (277)
...+ +.+.+ +++++.++.++++++|.+. ...+.+.+.++.+.
T Consensus 90 ---~g~~~l~~~i---------------------~~~~~~g~~~~v~~~~~~~--~~~~~~~~~~~~v~----------- 132 (215)
T PRK13813 90 ---TGRDSLKAVV---------------------EAAAESGGKVFVVVEMSHP--GALEFIQPHADKLA----------- 132 (215)
T ss_pred ---CCHHHHHHHH---------------------HHHHhcCCeEEEEEeCCCC--CCCCCHHHHHHHHH-----------
Confidence 6543 32333 3556677788888899753 23344444455442
Q ss_pred CCCCcCcHHHHHHccCCCCCcccccCHHHHHHHHHhhCCC-CeEEEeCCCCccC--HHHhh
Q psy11600 219 GGVGPNTIDECAKCLTGFGGQKFMQDMMPKVKWLRENYPT-LNIEVDGGVGPNT--IDECA 276 (277)
Q Consensus 219 GgV~~~tv~~~~~~gpg~ggq~F~~~~~~kI~~l~~~~~~-~~I~VDGGI~~~~--~~~~~ 276 (277)
.|++ .||++||.|.+...+||+++|+..+. +.| |||||+.++ ++.+.
T Consensus 133 ----~m~~------e~G~~g~~~~~~~~~~i~~l~~~~~~~~~i-vdgGI~~~g~~~~~~~ 182 (215)
T PRK13813 133 ----KLAQ------EAGAFGVVAPATRPERVRYIRSRLGDELKI-ISPGIGAQGGKAADAI 182 (215)
T ss_pred ----HHHH------HhCCCeEEECCCcchhHHHHHHhcCCCcEE-EeCCcCCCCCCHHHHH
Confidence 3444 59999999999889999999987654 678 999999985 76654
No 45
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=99.26 E-value=7.3e-11 Score=102.94 Aligned_cols=148 Identities=15% Similarity=0.130 Sum_probs=102.4
Q ss_pred HHHHHhcCCCeEEEecc-CCCCCHHHHHHHHhh-CCC--cccc----hhhh-hHHHHhcCCCeEEeecCCCCChH-HHHH
Q psy11600 80 IEPMADANVDQYTFHVE-PVDNVPQVIRQIKEA-GMK--VGQV----LQDW-IEPMADANVDQYTFHVEPVDNVP-QVIR 149 (277)
Q Consensus 80 i~~l~~ag~d~i~~H~e-~~d~g~~~i~~i~~~-~~~--~~d~----p~~~-i~~~~~~g~d~it~H~E~~~~~~-~~~~ 149 (277)
++.+ +.|++++-+=.. ...+|++.|+.+|+. +.. ..|. |..| ++.++++|||+|++|.| +.. .+.+
T Consensus 18 ~~~l-~~~v~~iev~~~l~~~~g~~~i~~l~~~~~~~~i~~d~k~~d~~~~~~~~~~~~Gad~i~vh~~---~~~~~~~~ 93 (206)
T TIGR03128 18 AEKV-ADYVDIIEIGTPLIKNEGIEAVKEMKEAFPDRKVLADLKTMDAGEYEAEQAFAAGADIVTVLGV---ADDATIKG 93 (206)
T ss_pred HHHc-ccCeeEEEeCCHHHHHhCHHHHHHHHHHCCCCEEEEEEeeccchHHHHHHHHHcCCCEEEEecc---CCHHHHHH
Confidence 4444 556676633101 123489999999987 332 2232 7777 99999999999999999 653 2333
Q ss_pred HHHHhCCccceeeCCCCCHHhHHHHHhhcCceEEEEe-cCCCCCchhhhhhhhhHHHHHhhCCCccEEEeCCCCcCcHHH
Q psy11600 150 QIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIMTV-EPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDE 228 (277)
Q Consensus 150 ~I~~~g~~~g~~i~p~t~~~~i~~~i~~~d~vl~mav-~Pgt~gq~~~~~~l~kI~~l~~~~~~~~i~vdGgV~~~tv~~ 228 (277)
.+ +++++.++.++..+ +|.++ .+.+....+. +.++. +
T Consensus 94 ~i---------------------~~~~~~g~~~~~~~~~~~t~--------~~~~~~~~~~--g~d~v--------~--- 131 (206)
T TIGR03128 94 AV---------------------KAAKKHGKEVQVDLINVKDK--------VKRAKELKEL--GADYI--------G--- 131 (206)
T ss_pred HH---------------------HHHHHcCCEEEEEecCCCCh--------HHHHHHHHHc--CCCEE--------E---
Confidence 33 35666777777774 88774 2233333322 34433 1
Q ss_pred HHHccCCCCCcccccCHHHHHHHHHhhCCCCeEEEeCCCCccCHHHhh
Q psy11600 229 CAKCLTGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECA 276 (277)
Q Consensus 229 ~~~~gpg~ggq~F~~~~~~kI~~l~~~~~~~~I~VDGGI~~~~~~~~~ 276 (277)
..|||++|.|.+...++++++++..+...|+||||||.+|++++.
T Consensus 132 ---~~pg~~~~~~~~~~~~~i~~l~~~~~~~~i~v~GGI~~~n~~~~~ 176 (206)
T TIGR03128 132 ---VHTGLDEQAKGQNPFEDLQTILKLVKEARVAVAGGINLDTIPDVI 176 (206)
T ss_pred ---EcCCcCcccCCCCCHHHHHHHHHhcCCCcEEEECCcCHHHHHHHH
Confidence 259999999999889999999998878889999999999998775
No 46
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=99.23 E-value=7.7e-10 Score=100.35 Aligned_cols=166 Identities=14% Similarity=0.213 Sum_probs=119.9
Q ss_pred CCeeeeeeeccCcHH-----hHHHHHhcCCCeEEEec---cC-CCC-------------------CHHHHHHHHhh-CCC
Q psy11600 64 KAFFETHMMVQNPQQ-----WIEPMADANVDQYTFHV---EP-VDN-------------------VPQVIRQIKEA-GMK 114 (277)
Q Consensus 64 ~~~~d~Hlmv~~p~~-----~i~~l~~ag~d~i~~H~---e~-~d~-------------------g~~~i~~i~~~-~~~ 114 (277)
+.-+-.+++..+|.. .++.+.++|+|++-+-+ |+ .|| ...+++++|+. +..
T Consensus 9 ~~~li~y~~aG~P~~~~~~~~~~~l~~~Gad~iElGiPfsDP~aDGpvIq~a~~~al~~G~~~~~~~~~v~~ir~~~~~~ 88 (256)
T TIGR00262 9 EGAFIPFVTAGDPTLETSLEIIKTLIEAGADALELGVPFSDPLADGPTIQAADLRALRAGMTPEKCFELLKKVRQKHPNI 88 (256)
T ss_pred CceEEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCC
Confidence 456889999999865 37778899999995543 22 233 34558888876 455
Q ss_pred cccc-----h------hhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCCccceeeCCCCCHHhHHHHHhhcCceEE
Q psy11600 115 VGQV-----L------QDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLI 183 (277)
Q Consensus 115 ~~d~-----p------~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~i~p~t~~~~i~~~i~~~d~vl~ 183 (277)
|+.. | ++|++.++++|++.+++|-+ ..++..++++ .++..++-++
T Consensus 89 plv~m~Y~Npi~~~G~e~f~~~~~~aGvdgviipDl---p~ee~~~~~~---------------------~~~~~gl~~i 144 (256)
T TIGR00262 89 PIGLLTYYNLIFRKGVEEFYAKCKEVGVDGVLVADL---PLEESGDLVE---------------------AAKKHGVKPI 144 (256)
T ss_pred CEEEEEeccHHhhhhHHHHHHHHHHcCCCEEEECCC---ChHHHHHHHH---------------------HHHHCCCcEE
Confidence 5332 6 89999999999999999988 7665544443 4566777777
Q ss_pred EEecCCCCCchhhhhhhhhHHHHHhhCCCccEEEeCCCCcCcHHHHHHccCCCCCcc--cccCHHHHHHHHHhhCCCCeE
Q psy11600 184 MTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKCLTGFGGQK--FMQDMMPKVKWLRENYPTLNI 261 (277)
Q Consensus 184 mav~Pgt~gq~~~~~~l~kI~~l~~~~~~~~i~vdGgV~~~tv~~~~~~gpg~ggq~--F~~~~~~kI~~l~~~~~~~~I 261 (277)
..++|.|+ .++++.+.+..+.+.. .+|+ -|+.||. |.++..++++++|+.. +..|
T Consensus 145 ~lv~P~T~--------~eri~~i~~~~~gfiy-------~vs~-------~G~TG~~~~~~~~~~~~i~~lr~~~-~~pi 201 (256)
T TIGR00262 145 FLVAPNAD--------DERLKQIAEKSQGFVY-------LVSR-------AGVTGARNRAASALNELVKRLKAYS-AKPV 201 (256)
T ss_pred EEECCCCC--------HHHHHHHHHhCCCCEE-------EEEC-------CCCCCCcccCChhHHHHHHHHHhhc-CCCE
Confidence 89999997 3455555554443333 3443 3777765 8889999999999875 3469
Q ss_pred EEeCCCC-ccCHHHhh
Q psy11600 262 EVDGGVG-PNTIDECA 276 (277)
Q Consensus 262 ~VDGGI~-~~~~~~~~ 276 (277)
.|||||+ +++++++.
T Consensus 202 ~vgfGI~~~e~~~~~~ 217 (256)
T TIGR00262 202 LVGFGISKPEQVKQAI 217 (256)
T ss_pred EEeCCCCCHHHHHHHH
Confidence 9999998 89998875
No 47
>PRK13306 ulaD 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional
Probab=99.22 E-value=9.3e-11 Score=103.79 Aligned_cols=132 Identities=12% Similarity=0.095 Sum_probs=89.8
Q ss_pred CCCHHHHHHHHhh-CCCcc--cc----hhhhhH-HHHhcCCCeEEeecCCCCChHHHHH-HHHHhCCccceeeCCCCCHH
Q psy11600 99 DNVPQVIRQIKEA-GMKVG--QV----LQDWIE-PMADANVDQYTFHVEPVDNVPQVIR-QIKEAGMKVGLAIKPKTPVD 169 (277)
Q Consensus 99 d~g~~~i~~i~~~-~~~~~--d~----p~~~i~-~~~~~g~d~it~H~E~~~~~~~~~~-~I~~~g~~~g~~i~p~t~~~ 169 (277)
.+|+.+|+.+|+. +..++ |. +.+|+. .++++|+|++|+|.+ ...+.++ .++.
T Consensus 41 ~~G~~~i~~lk~~~~~~~v~~DLK~~Di~~~v~~~~~~~Gad~vTvH~~---a~~~~i~~~~~~---------------- 101 (216)
T PRK13306 41 AEGMKAVRVLRALYPDKIIVADTKIADAGKILAKMAFEAGADWVTVICA---AHIPTIKAALKV---------------- 101 (216)
T ss_pred HhCHHHHHHHHHHCCCCEEEEEEeecCCcHHHHHHHHHCCCCEEEEeCC---CCHHHHHHHHHH----------------
Confidence 3499999999998 33333 22 335554 899999999999998 6655333 3332
Q ss_pred hHHHHHhhcCceEEEEecCCCCCchhhhhhhhhHHHHHhhCCCccEEEeCCCCcCcHHHHHHccCCCCCcccccCHHHHH
Q psy11600 170 VIAEYIESADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKCLTGFGGQKFMQDMMPKV 249 (277)
Q Consensus 170 ~i~~~i~~~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~~~~~i~vdGgV~~~tv~~~~~~gpg~ggq~F~~~~~~kI 249 (277)
++..+.+++++++|.++. +.++.+.+ ..-.++++ .+++ .|+++||.|.+..+++|
T Consensus 102 -----~~~~g~~~~V~llts~~~--------~~l~~~~~-~~~~~~vl-----~~a~------~~~~~G~v~s~~~~~~i 156 (216)
T PRK13306 102 -----AKEFNGEIQIELYGNWTW--------EQAQQWRD-AGISQVIY-----HRSR------DAQLAGVAWGEKDLNKV 156 (216)
T ss_pred -----HHHcCCEEEEEECCCCCH--------HHHHHHHc-CChhhhhh-----hhhh------hhhhcCCCCCHHHHHHH
Confidence 334466888999998852 22222211 01122322 2333 48899999999999999
Q ss_pred HHHHhhCCCCeEEEeCCCCccCHHHhh
Q psy11600 250 KWLRENYPTLNIEVDGGVGPNTIDECA 276 (277)
Q Consensus 250 ~~l~~~~~~~~I~VDGGI~~~~~~~~~ 276 (277)
|++++. .+.|.|||||+++|++.++
T Consensus 157 r~~~~~--~~~i~V~gGI~~~~~~~~~ 181 (216)
T PRK13306 157 KKLSDM--GFKVSVTGGLVVEDLKLFK 181 (216)
T ss_pred HHHhcC--CCeEEEcCCCCHhhHHHHh
Confidence 998763 5679999999999987754
No 48
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=99.21 E-value=8.3e-10 Score=100.48 Aligned_cols=171 Identities=12% Similarity=0.199 Sum_probs=134.7
Q ss_pred CCeeeeeeeccCcHH-----hHHHHHhcCCCeEEEec---cC-CCC-------------------CHHHHHHHHhhCCCc
Q psy11600 64 KAFFETHMMVQNPQQ-----WIEPMADANVDQYTFHV---EP-VDN-------------------VPQVIRQIKEAGMKV 115 (277)
Q Consensus 64 ~~~~d~Hlmv~~p~~-----~i~~l~~ag~d~i~~H~---e~-~d~-------------------g~~~i~~i~~~~~~~ 115 (277)
+.-+-.+++..+|.. .++.+.++|+|.+-+-+ |+ .|| ...+++.+|+....|
T Consensus 14 ~~ali~yi~aG~P~~~~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~g~~~~~~~~~~~~~r~~~~~p 93 (263)
T CHL00200 14 QCALIPFITAGDPDIVITKKALKILDKKGADIIELGIPYSDPLADGPIIQEASNRALKQGINLNKILSILSEVNGEIKAP 93 (263)
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCC
Confidence 446899999999865 37778899999995543 22 244 356666676544444
Q ss_pred -ccc----------hhhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCCccceeeCCCCCHHhHHHHHhhcC-ceEE
Q psy11600 116 -GQV----------LQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESAD-LVLI 183 (277)
Q Consensus 116 -~d~----------p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~i~p~t~~~~i~~~i~~~d-~vl~ 183 (277)
+.| .++|++.++++|+|.+.+|-+|-+...+..+.+++.|+....-+.|.|+.+.+..+.+..+ ++..
T Consensus 94 ~vlm~Y~N~i~~~G~e~F~~~~~~aGvdgviipDLP~ee~~~~~~~~~~~gi~~I~lv~PtT~~eri~~i~~~a~gFIY~ 173 (263)
T CHL00200 94 IVIFTYYNPVLHYGINKFIKKISQAGVKGLIIPDLPYEESDYLISVCNLYNIELILLIAPTSSKSRIQKIARAAPGCIYL 173 (263)
T ss_pred EEEEecccHHHHhCHHHHHHHHHHcCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHhCCCcEEE
Confidence 333 5889999999999999999986555667788889999999999999999999999999887 9999
Q ss_pred EEecCCCCCch--hhhhhhhhHHHHHhhCCCccEEEeCCCC-cCcHHHHHHccCCC
Q psy11600 184 MTVEPGFGGQK--FMQDMMPKVKWLRENYPTLNIEVDGGVG-PNTIDECAKCLTGF 236 (277)
Q Consensus 184 mav~Pgt~gq~--~~~~~l~kI~~l~~~~~~~~i~vdGgV~-~~tv~~~~~~gpg~ 236 (277)
|+ +||+.|++ +.+.+.+.++.+++ .-+.-+.|++||+ .++++.+.++|+|.
T Consensus 174 vS-~~GvTG~~~~~~~~~~~~i~~ir~-~t~~Pi~vGFGI~~~e~~~~~~~~GADG 227 (263)
T CHL00200 174 VS-TTGVTGLKTELDKKLKKLIETIKK-MTNKPIILGFGISTSEQIKQIKGWNING 227 (263)
T ss_pred Ec-CCCCCCCCccccHHHHHHHHHHHH-hcCCCEEEECCcCCHHHHHHHHhcCCCE
Confidence 99 89998884 44555666667766 3467899999999 89999999999984
No 49
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=99.17 E-value=4.2e-10 Score=107.44 Aligned_cols=153 Identities=14% Similarity=0.075 Sum_probs=104.7
Q ss_pred eeeccCcHHhHHHHHhcC---CCeEEEeccCC-----CCCHHHHHHHHhh-CCCccc--c----hhhh-hHHHHhcCCCe
Q psy11600 70 HMMVQNPQQWIEPMADAN---VDQYTFHVEPV-----DNVPQVIRQIKEA-GMKVGQ--V----LQDW-IEPMADANVDQ 133 (277)
Q Consensus 70 Hlmv~~p~~~i~~l~~ag---~d~i~~H~e~~-----d~g~~~i~~i~~~-~~~~~d--~----p~~~-i~~~~~~g~d~ 133 (277)
=|=+.++++.++.+.+.+ .+| +++. .+|+.+|+++|+. +..+++ + |.+| ++.++++|+|+
T Consensus 178 ALD~~~~~~A~~i~~~l~~~~~~~----iKvG~~L~~~~G~~iVk~Lr~~~~~~~I~~DLK~~Di~~~vv~~~a~aGAD~ 253 (391)
T PRK13307 178 ALDLPDLEEVERVLSQLPKSDHII----IEAGTPLIKKFGLEVISKIREVRPDAFIVADLKTLDTGNLEARMAADATADA 253 (391)
T ss_pred ecCCCCHHHHHHHHHhcccccceE----EEECHHHHHHhCHHHHHHHHHhCCCCeEEEEecccChhhHHHHHHHhcCCCE
Confidence 344455666666555553 233 3442 3599999999998 443333 2 6677 88999999999
Q ss_pred EEeecCCCCChH-HHHHHHHHhCCccceeeCCCCCHHhHHHHHhhcCceEEE-EecCCCCCchhhhhhhhhHHHHHhhCC
Q psy11600 134 YTFHVEPVDNVP-QVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIM-TVEPGFGGQKFMQDMMPKVKWLRENYP 211 (277)
Q Consensus 134 it~H~E~~~~~~-~~~~~I~~~g~~~g~~i~p~t~~~~i~~~i~~~d~vl~m-av~Pgt~gq~~~~~~l~kI~~l~~~~~ 211 (277)
+|||.| ... .+.+.++ .+++.+...++ ++||.++ ++.++++..
T Consensus 254 vTVH~e---a~~~ti~~ai~---------------------~akk~GikvgVD~lnp~tp-----------~e~i~~l~~ 298 (391)
T PRK13307 254 VVISGL---APISTIEKAIH---------------------EAQKTGIYSILDMLNVEDP-----------VKLLESLKV 298 (391)
T ss_pred EEEecc---CCHHHHHHHHH---------------------HHHHcCCEEEEEEcCCCCH-----------HHHHHHhhC
Confidence 999999 655 3444444 35666777778 8899876 344454455
Q ss_pred CccEEEeCCCCcCcHHHHHHccCCCCCcccccCHHHHHHHHHhhCCCCeEEEeCCCCccCHHHhh
Q psy11600 212 TLNIEVDGGVGPNTIDECAKCLTGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECA 276 (277)
Q Consensus 212 ~~~i~vdGgV~~~tv~~~~~~gpg~ggq~F~~~~~~kI~~l~~~~~~~~I~VDGGI~~~~~~~~~ 276 (277)
.+++... +|. .+|+ ++ +...++|+++|+..+++.|+||||||.+|+++++
T Consensus 299 ~vD~Vll-----ht~-----vdp~--~~---~~~~~kI~~ikk~~~~~~I~VdGGI~~eti~~l~ 348 (391)
T PRK13307 299 KPDVVEL-----HRG-----IDEE--GT---EHAWGNIKEIKKAGGKILVAVAGGVRVENVEEAL 348 (391)
T ss_pred CCCEEEE-----ccc-----cCCC--cc---cchHHHHHHHHHhCCCCcEEEECCcCHHHHHHHH
Confidence 6677653 331 1355 33 4567899999988777889999999999998875
No 50
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=99.04 E-value=5.7e-09 Score=90.45 Aligned_cols=147 Identities=15% Similarity=0.065 Sum_probs=97.1
Q ss_pred hHHHHHhcCCCeEEEeccC-CCCCHHHHHHHHhh-CCCcccc------hhh-hhHHHHhcCCCeEEeecCCCCChHH-HH
Q psy11600 79 WIEPMADANVDQYTFHVEP-VDNVPQVIRQIKEA-GMKVGQV------LQD-WIEPMADANVDQYTFHVEPVDNVPQ-VI 148 (277)
Q Consensus 79 ~i~~l~~ag~d~i~~H~e~-~d~g~~~i~~i~~~-~~~~~d~------p~~-~i~~~~~~g~d~it~H~E~~~~~~~-~~ 148 (277)
.++.+.+. ++++-+.... ..+|++.++++|+. +..+++. |.+ +++.++++|+|++++|.| +..+ ..
T Consensus 18 ~~~~l~~~-i~~ieig~~~~~~~g~~~i~~i~~~~~~~~i~~~~~v~~~~~~~~~~~~~aGad~i~~h~~---~~~~~~~ 93 (202)
T cd04726 18 LAKKVPDG-VDIIEAGTPLIKSEGMEAVRALREAFPDKIIVADLKTADAGALEAEMAFKAGADIVTVLGA---APLSTIK 93 (202)
T ss_pred HHHHhhhc-CCEEEcCCHHHHHhCHHHHHHHHHHCCCCEEEEEEEeccccHHHHHHHHhcCCCEEEEEee---CCHHHHH
Confidence 46666665 7877553222 34589999999987 4444432 443 479999999999999999 5442 33
Q ss_pred HHHHHhCCccceeeCCCCCHHhHHHHHhhcCceEEEE-ecCCCCCchhhhhhhhhHHHHHhhCCCccEEEeCCCCcCcHH
Q psy11600 149 RQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIMT-VEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTID 227 (277)
Q Consensus 149 ~~I~~~g~~~g~~i~p~t~~~~i~~~i~~~d~vl~ma-v~Pgt~gq~~~~~~l~kI~~l~~~~~~~~i~vdGgV~~~tv~ 227 (277)
+.+ ++++..++.++++ ++|.|+. +.++.+....++..-
T Consensus 94 ~~i---------------------~~~~~~g~~~~v~~~~~~t~~-----------e~~~~~~~~~d~v~~--------- 132 (202)
T cd04726 94 KAV---------------------KAAKKYGKEVQVDLIGVEDPE-----------KRAKLLKLGVDIVIL--------- 132 (202)
T ss_pred HHH---------------------HHHHHcCCeEEEEEeCCCCHH-----------HHHHHHHCCCCEEEE---------
Confidence 333 3456667777775 7898862 111112224454431
Q ss_pred HHHHccCCCCCccc-ccCHHHHHHHHHhhCCCCeEEEeCCCCccCHHHhh
Q psy11600 228 ECAKCLTGFGGQKF-MQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECA 276 (277)
Q Consensus 228 ~~~~~gpg~ggq~F-~~~~~~kI~~l~~~~~~~~I~VDGGI~~~~~~~~~ 276 (277)
+|++.++.+ .+...++++++++. ++..|.+|||||++|++++.
T Consensus 133 -----~~~~~~~~~~~~~~~~~i~~~~~~-~~~~i~~~GGI~~~~i~~~~ 176 (202)
T cd04726 133 -----HRGIDAQAAGGWWPEDDLKKVKKL-LGVKVAVAGGITPDTLPEFK 176 (202)
T ss_pred -----cCcccccccCCCCCHHHHHHHHhh-cCCCEEEECCcCHHHHHHHH
Confidence 355545554 46678888888875 56889999999999998875
No 51
>TIGR01740 pyrF orotidine 5'-phosphate decarboxylase, subfamily 1. This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. In many eukaryotes, the region hit by this model is part of a multifunctional protein.
Probab=98.90 E-value=1.8e-08 Score=88.87 Aligned_cols=89 Identities=13% Similarity=0.126 Sum_probs=72.5
Q ss_pred ccccCcccHHHHHHHHHHcC--CCE--EEEeccccccccCCCCCHHHHHHHHhcCCCCeeee--eeeccCcHHhHHHHHh
Q psy11600 12 ILNSDLSNLHSESQNLLDSG--ADY--LHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFET--HMMVQNPQQWIEPMAD 85 (277)
Q Consensus 12 ~~~~d~~~l~~~~~~l~~~~--~~~--~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~--Hlmv~~p~~~i~~l~~ 85 (277)
|+|+|+.+++++++.+++.+ +++ +|+|+++ +||++.+++||+..+.+.+|+ |-+-.....+++.+.+
T Consensus 2 ivAlD~~~~~~a~~~~~~~~~~v~~iKig~~l~~-------~~G~~~v~~l~~~~~~v~lD~K~~Dig~t~~~~~~~~~~ 74 (213)
T TIGR01740 2 IVALDVTTKDEALDLADSLGPEIEVIKVGIDLLL-------DGGDKIIDELAKLNKLIFLDLKFADIPNTVKLQYESKIK 74 (213)
T ss_pred EEECCCCCHHHHHHHHHhcCCcCcEEEECHHHHH-------hcCHHHHHHHHHcCCCEEEEEeecchHHHHHHHHHHHHh
Confidence 57899999999999999998 778 8888888 689999999998755566777 7777777788898999
Q ss_pred cCCCeEEEeccCCCCCHHHHHHHHh
Q psy11600 86 ANVDQYTFHVEPVDNVPQVIRQIKE 110 (277)
Q Consensus 86 ag~d~i~~H~e~~d~g~~~i~~i~~ 110 (277)
+|+|++|+|... |+..++...+
T Consensus 75 ~gad~vTvh~~~---g~~~l~~~~~ 96 (213)
T TIGR01740 75 QGADMVNVHGVA---GSESVEAAKE 96 (213)
T ss_pred cCCCEEEEcCCC---CHHHHHHHHH
Confidence 999999999754 3444544443
No 52
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=98.75 E-value=4.5e-07 Score=76.38 Aligned_cols=177 Identities=14% Similarity=0.108 Sum_probs=114.9
Q ss_pred ccHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHH----HHHhcCCCeEEE
Q psy11600 18 SNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIE----PMADANVDQYTF 93 (277)
Q Consensus 18 ~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~----~l~~ag~d~i~~ 93 (277)
.+..+..+.+.+.|++.+|+..++.++..+...+++.++.+++. .+.++.+|+++.++.+.+. .+.++|+|++++
T Consensus 12 ~~~~~~~~~~~~~G~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~d~v~l 90 (200)
T cd04722 12 GDPVELAKAAAEAGADAIIVGTRSSDPEEAETDDKEVLKEVAAE-TDLPLGVQLAINDAAAAVDIAAAAARAAGADGVEI 90 (200)
T ss_pred HHHHHHHHHHHcCCCCEEEEeeEEECcccCCCccccHHHHHHhh-cCCcEEEEEccCCchhhhhHHHHHHHHcCCCEEEE
Confidence 36678888899999999999999998887766665567777764 7899999999999988774 788899999988
Q ss_pred eccCCCCCHHHHHHHHhhCCCcccchhhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHh--CCccceeeCCCCCHHhH
Q psy11600 94 HVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEA--GMKVGLAIKPKTPVDVI 171 (277)
Q Consensus 94 H~e~~d~g~~~i~~i~~~~~~~~d~p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~--g~~~g~~i~p~t~~~~i 171 (277)
|...... +. ...+.++.+++. ++.....+.+.......
T Consensus 91 ~~~~~~~-~~---------------------------------------~~~~~~~~i~~~~~~~~v~~~~~~~~~~~~~ 130 (200)
T cd04722 91 HGAVGYL-AR---------------------------------------EDLELIRELREAVPDVKVVVKLSPTGELAAA 130 (200)
T ss_pred eccCCcH-HH---------------------------------------HHHHHHHHHHHhcCCceEEEEECCCCccchh
Confidence 8775431 00 122333334433 44445555544433221
Q ss_pred HHHHhhcCceEEEEecCCCCCchhhhhhhhhHHHHHhhCCCccEEEeCCCCc-CcHHHHHHccCCC
Q psy11600 172 AEYIESADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGP-NTIDECAKCLTGF 236 (277)
Q Consensus 172 ~~~i~~~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~~~~~i~vdGgV~~-~tv~~~~~~gpg~ 236 (277)
...-..+|.+.+....+++.++.........+..++ ...++.+.+.||++. +++.++.+.|+++
T Consensus 131 ~~~~~g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~pi~~~GGi~~~~~~~~~~~~Gad~ 195 (200)
T cd04722 131 AAEEAGVDEVGLGNGGGGGGGRDAVPIADLLLILAK-RGSKVPVIAGGGINDPEDAAEALALGADG 195 (200)
T ss_pred hHHHcCCCEEEEcCCcCCCCCccCchhHHHHHHHHH-hcCCCCEEEECCCCCHHHHHHHHHhCCCE
Confidence 101123455554444554443322221122333333 245688999999998 8999888888774
No 53
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=98.38 E-value=6.2e-06 Score=70.23 Aligned_cols=150 Identities=13% Similarity=0.106 Sum_probs=93.7
Q ss_pred cCcHHhHHHHHhcCCCeEEEeccCCCCC----HHHHHHHHhhCCC--cccchhhhhHHHHhcCCCeEEeecCCCCChHHH
Q psy11600 74 QNPQQWIEPMADANVDQYTFHVEPVDNV----PQVIRQIKEAGMK--VGQVLQDWIEPMADANVDQYTFHVEPVDNVPQV 147 (277)
Q Consensus 74 ~~p~~~i~~l~~ag~d~i~~H~e~~d~g----~~~i~~i~~~~~~--~~d~p~~~i~~~~~~g~d~it~H~E~~~~~~~~ 147 (277)
.+..+.++.+.++|++++ |++.++.. ...++++++.+.. ...+..++++.+.++|+| .+|++ .....
T Consensus 12 ~~~~~~l~~l~~~g~~~i--~lr~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~a~~~g~~--~vh~~---~~~~~ 84 (196)
T cd00564 12 EDLLEVVEAALKGGVTLV--QLREKDLSARELLELARALRELCRKYGVPLIINDRVDLALAVGAD--GVHLG---QDDLP 84 (196)
T ss_pred chHHHHHHHHHhcCCCEE--EEeCCCCCHHHHHHHHHHHHHHHHHhCCeEEEeChHHHHHHcCCC--EEecC---cccCC
Confidence 356677889999999998 88777652 2345666655431 122244578888999999 66887 54333
Q ss_pred HHHHHHhCCccceeeCCCCCHHhHHHHHhhcCceEEEEecCCCCCchhhhhhhhhHHHHHhhCCCccEEEeCCCCcCcHH
Q psy11600 148 IRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTID 227 (277)
Q Consensus 148 ~~~I~~~g~~~g~~i~p~t~~~~i~~~i~~~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~~~~~i~vdGgV~~~tv~ 227 (277)
...+++ +...+..+++++. ++ +.+.+.. ..+++....|.+
T Consensus 85 ~~~~~~---------------------~~~~~~~~g~~~~--t~---------~~~~~~~--~~g~d~i~~~~~------ 124 (196)
T cd00564 85 VAEARA---------------------LLGPDLIIGVSTH--SL---------EEALRAE--ELGADYVGFGPV------ 124 (196)
T ss_pred HHHHHH---------------------HcCCCCEEEeeCC--CH---------HHHHHHh--hcCCCEEEECCc------
Confidence 333332 2233455555542 21 1222222 124666654444
Q ss_pred HHHHccCCCCCccc-ccCHHHHHHHHHhhCCCCeEEEeCCCCccCHHHhh
Q psy11600 228 ECAKCLTGFGGQKF-MQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECA 276 (277)
Q Consensus 228 ~~~~~gpg~ggq~F-~~~~~~kI~~l~~~~~~~~I~VDGGI~~~~~~~~~ 276 (277)
.|+..++.+ .+..+++++++++. .+..+.++||||.+|++++.
T Consensus 125 -----~~~~~~~~~~~~~~~~~~~~~~~~-~~~pv~a~GGi~~~~i~~~~ 168 (196)
T cd00564 125 -----FPTPTKPGAGPPLGLELLREIAEL-VEIPVVAIGGITPENAAEVL 168 (196)
T ss_pred -----cCCCCCCCCCCCCCHHHHHHHHHh-CCCCEEEECCCCHHHHHHHH
Confidence 266666666 66778899988876 46789999999999998775
No 54
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=98.34 E-value=6.6e-06 Score=71.59 Aligned_cols=149 Identities=9% Similarity=0.065 Sum_probs=89.4
Q ss_pred CcHHhHHHHHhcCCCeEEEeccCCCC-CHHHHHHHHhhCCC-----cccchhhhhHHHHhcCCCeEEeecCCCCChHHHH
Q psy11600 75 NPQQWIEPMADANVDQYTFHVEPVDN-VPQVIRQIKEAGMK-----VGQVLQDWIEPMADANVDQYTFHVEPVDNVPQVI 148 (277)
Q Consensus 75 ~p~~~i~~l~~ag~d~i~~H~e~~d~-g~~~i~~i~~~~~~-----~~d~p~~~i~~~~~~g~d~it~H~E~~~~~~~~~ 148 (277)
+..+.++.+.++|++++ |++.++. +...++.+++.... ...+..++++.+.++|+|.+.+ . ......
T Consensus 22 ~~~~~~~~~~~~gv~~v--~lr~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~~gad~vh~--~---~~~~~~ 94 (212)
T PRK00043 22 DLLEVVEAALEGGVTLV--QLREKGLDTRERLELARALKELCRRYGVPLIVNDRVDLALAVGADGVHL--G---QDDLPV 94 (212)
T ss_pred cHHHHHHHHHhcCCCEE--EEeCCCCCHHHHHHHHHHHHHHHHHhCCeEEEeChHHHHHHcCCCEEec--C---cccCCH
Confidence 35567888999999999 8877764 45555555443211 1123567889999999998544 3 432222
Q ss_pred HHHHHhCCccceeeCCCCCHHhHHHHHhhcCceEEEEecCCCCCchhhhhhhhhHHHH-HhhCCCccEEEeCCCCcCcHH
Q psy11600 149 RQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIMTVEPGFGGQKFMQDMMPKVKWL-RENYPTLNIEVDGGVGPNTID 227 (277)
Q Consensus 149 ~~I~~~g~~~g~~i~p~t~~~~i~~~i~~~d~vl~mav~Pgt~gq~~~~~~l~kI~~l-~~~~~~~~i~vdGgV~~~tv~ 227 (277)
..+++ +...+..+++++. + ..++ +......|+..-|.+.
T Consensus 95 ~~~~~---------------------~~~~~~~~g~~~~--t------------~~e~~~a~~~gaD~v~~~~~~----- 134 (212)
T PRK00043 95 ADARA---------------------LLGPDAIIGLSTH--T------------LEEAAAALAAGADYVGVGPIF----- 134 (212)
T ss_pred HHHHH---------------------HcCCCCEEEEeCC--C------------HHHHHHHhHcCCCEEEECCcc-----
Confidence 33322 2233444555542 2 1222 2223456666544443
Q ss_pred HHHHccCCCCCccccc-CHHHHHHHHHhhCCCCeEEEeCCCCccCHHHhh
Q psy11600 228 ECAKCLTGFGGQKFMQ-DMMPKVKWLRENYPTLNIEVDGGVGPNTIDECA 276 (277)
Q Consensus 228 ~~~~~gpg~ggq~F~~-~~~~kI~~l~~~~~~~~I~VDGGI~~~~~~~~~ 276 (277)
|+...+.+.+ ..+++++++++..+++.|.++||||.+|++++.
T Consensus 135 ------~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~a~GGI~~~~i~~~~ 178 (212)
T PRK00043 135 ------PTPTKKDAKAPQGLEGLREIRAAVGDIPIVAIGGITPENAPEVL 178 (212)
T ss_pred ------CCCCCCCCCCCCCHHHHHHHHHhcCCCCEEEECCcCHHHHHHHH
Confidence 4443333333 237889998887766889999999999998764
No 55
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=98.24 E-value=3.1e-05 Score=75.14 Aligned_cols=157 Identities=14% Similarity=0.082 Sum_probs=100.8
Q ss_pred eeccCcHHhHHHHHh---cCCCeEEEeccC-CCCCHHHHHHHHhhCC--C-ccc-----chhhhhHHHHhcCCCeEEeec
Q psy11600 71 MMVQNPQQWIEPMAD---ANVDQYTFHVEP-VDNVPQVIRQIKEAGM--K-VGQ-----VLQDWIEPMADANVDQYTFHV 138 (277)
Q Consensus 71 lmv~~p~~~i~~l~~---ag~d~i~~H~e~-~d~g~~~i~~i~~~~~--~-~~d-----~p~~~i~~~~~~g~d~it~H~ 138 (277)
+=..++++.++.+.+ .|++++++.... ...+...++++++... . ..| .|..+++.+.++|+|.+++|.
T Consensus 10 lD~~~~~~~~~~~~~~~~~Gv~~ie~g~p~~~~~~~~~i~~l~~~~~~~~ii~D~kl~d~g~~~v~~a~~aGAdgV~v~g 89 (430)
T PRK07028 10 LDLLELDRAVEIAKEAVAGGADWIEAGTPLIKSEGMNAIRTLRKNFPDHTIVADMKTMDTGAIEVEMAAKAGADIVCILG 89 (430)
T ss_pred eccCCHHHHHHHHHHHHhcCCcEEEeCCHHHHHhhHHHHHHHHHHCCCCEEEEEeeeccchHHHHHHHHHcCCCEEEEec
Confidence 444567776655555 899999432211 1347888999988743 1 223 388899999999999999997
Q ss_pred CCCCChH-HHHHHHHHhCCccceeeCCCCCHHhHHHHHhhcCceEEE-EecCCCCCchhhhhhhhhHHHHHhhCCCccEE
Q psy11600 139 EPVDNVP-QVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIM-TVEPGFGGQKFMQDMMPKVKWLRENYPTLNIE 216 (277)
Q Consensus 139 E~~~~~~-~~~~~I~~~g~~~g~~i~p~t~~~~i~~~i~~~d~vl~m-av~Pgt~gq~~~~~~l~kI~~l~~~~~~~~i~ 216 (277)
+ +.. .+.+.++ +++..+..++. .++|.++ .+.++.+.+. ..+..
T Consensus 90 ~---~~~~~~~~~i~---------------------~a~~~G~~~~~g~~s~~t~--------~e~~~~a~~~--GaD~I 135 (430)
T PRK07028 90 L---ADDSTIEDAVR---------------------AARKYGVRLMADLINVPDP--------VKRAVELEEL--GVDYI 135 (430)
T ss_pred C---CChHHHHHHHH---------------------HHHHcCCEEEEEecCCCCH--------HHHHHHHHhc--CCCEE
Confidence 7 433 2333333 34444544444 3566553 2223333322 23433
Q ss_pred EeCCCCcCcHHHHHHccCCCCCcccccCHHHHHHHHHhhCCCCeEEEeCCCCccCHHHhh
Q psy11600 217 VDGGVGPNTIDECAKCLTGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECA 276 (277)
Q Consensus 217 vdGgV~~~tv~~~~~~gpg~ggq~F~~~~~~kI~~l~~~~~~~~I~VDGGI~~~~~~~~~ 276 (277)
. .+|||.++.+.+..++.++++++.. ++.|.++|||+.+|+.++.
T Consensus 136 ~--------------~~pg~~~~~~~~~~~~~l~~l~~~~-~iPI~a~GGI~~~n~~~~l 180 (430)
T PRK07028 136 N--------------VHVGIDQQMLGKDPLELLKEVSEEV-SIPIAVAGGLDAETAAKAV 180 (430)
T ss_pred E--------------EEeccchhhcCCChHHHHHHHHhhC-CCcEEEECCCCHHHHHHHH
Confidence 1 2588888888777788888888754 3779999999999987764
No 56
>PRK13305 sgbH 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional
Probab=98.24 E-value=1e-05 Score=71.86 Aligned_cols=188 Identities=16% Similarity=0.195 Sum_probs=122.8
Q ss_pred eeccccCcccHHHHHHHHHHcCCCEEEEeccc-c-ccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHH-hHHHHHhc
Q psy11600 10 PSILNSDLSNLHSESQNLLDSGADYLHLDVMD-G-TFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQ-WIEPMADA 86 (277)
Q Consensus 10 ~s~~~~d~~~l~~~~~~l~~~~~~~~h~DimD-g-~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~-~i~~l~~a 86 (277)
+=+++.|..++++.++.+++. .+ |+|+.. | .+. +.+|++.|++||+.+|+.++-++|+..|-.+ ..+.+.++
T Consensus 5 ~livALD~~~~~~A~~l~~~l-~~--~v~~iKVG~~L~--~~~G~~~i~~lk~~~~~~~IflDlKl~DIp~tv~~~~~~~ 79 (218)
T PRK13305 5 LLQLALDHTSLEAAQRDVTLL-KD--HVDIVEAGTILC--LNEGLGAVKALREQCPDKIIVADWKVADAGETLAQQAFGA 79 (218)
T ss_pred CEEEEeCCCCHHHHHHHHHHc-cc--cCCEEEECHHHH--HHhCHHHHHHHHHhCCCCEEEEEeecccChHHHHHHHHHc
Confidence 346778999999999998876 34 367777 3 333 4579999999999999999999999999654 46677789
Q ss_pred CCCeEEEeccCCCCCHHHHHHHHhh----CCC-cccc---h-hhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCCc
Q psy11600 87 NVDQYTFHVEPVDNVPQVIRQIKEA----GMK-VGQV---L-QDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMK 157 (277)
Q Consensus 87 g~d~i~~H~e~~d~g~~~i~~i~~~----~~~-~~d~---p-~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~ 157 (277)
|+|++|+|.- +|..++++.++. +.. ..++ . ..-.+.+.+.|.+.+.+|.- ..-++.|
T Consensus 80 Gad~~tv~~~---~g~~~i~~a~~~a~~~~~~~~~~llgV~t~~~~~~l~~~g~~~~v~h~a---------~~a~~~G-- 145 (218)
T PRK13305 80 GANWMTIICA---APLATVEKGHAVAQRCGGEIQIELFGNWTLDDARDWHRIGVRQAIYHRG---------RDAQASG-- 145 (218)
T ss_pred CCCEEEEecC---CCHHHHHHHHHHHHhcCCcccceEEEecCcchHHHHHHcCCHHHHHHHH---------HHHHHhC--
Confidence 9999999963 578888887663 211 1121 1 22234445555543333321 1112211
Q ss_pred cceeeCCCCCHHhHHHHHhhcCceEEEEecCCCCCchhhhhhhhhHHHHHhhC-CCccEEEeCCCCcCcHHHHHHccCCC
Q psy11600 158 VGLAIKPKTPVDVIAEYIESADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENY-PTLNIEVDGGVGPNTIDECAKCLTGF 236 (277)
Q Consensus 158 ~g~~i~p~t~~~~i~~~i~~~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~-~~~~i~vdGgV~~~tv~~~~~~gpg~ 236 (277)
. + +++ ..++.+++.. +++.+.|-|||++.+.....+.++++
T Consensus 146 --~-------------------------v---~s~--------~e~~~ir~~~~~~~~i~VtpGIr~~~~~~~dq~rvd~ 187 (218)
T PRK13305 146 --Q-------------------------Q---WGE--------ADLARMKALSDIGLELSITGGITPADLPLFKDIRVKA 187 (218)
T ss_pred --C-------------------------C---CCH--------HHHHHHHHHhCCCCcEEEeCCcCccccccccccCCCE
Confidence 0 0 111 1134444433 45778899999999888888888886
Q ss_pred ---CCcccc-cCHHHHHHHHHh
Q psy11600 237 ---GGQKFM-QDMMPKVKWLRE 254 (277)
Q Consensus 237 ---ggq~F~-~~~~~kI~~l~~ 254 (277)
|+.... ++..+..+++++
T Consensus 188 iVVGR~It~A~dP~~aa~~i~~ 209 (218)
T PRK13305 188 FIAGRALAGAANPAQVAADFHA 209 (218)
T ss_pred EEECCcccCCCCHHHHHHHHHH
Confidence 777776 466666666654
No 57
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=97.99 E-value=0.00034 Score=61.47 Aligned_cols=187 Identities=14% Similarity=0.149 Sum_probs=111.5
Q ss_pred HHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEEeccC--CCCCHHHHHHHHhhCCCcccc-----hhhhhHHH
Q psy11600 54 VVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTFHVEP--VDNVPQVIRQIKEAGMKVGQV-----LQDWIEPM 126 (277)
Q Consensus 54 ~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~H~e~--~d~g~~~i~~i~~~~~~~~d~-----p~~~i~~~ 126 (277)
+|.++++.-|.... .....+|.++.+.+.++|++++|+.-+- ..+.+..++.+|+....|+.+ +...++.+
T Consensus 13 vIae~k~~sp~~~~--~~~~~~~~~~A~~~~~~GA~~l~v~~~~~~~~g~~~~~~~i~~~v~iPi~~~~~i~~~~~v~~~ 90 (217)
T cd00331 13 VIAEVKRASPSKGL--IREDFDPVEIAKAYEKAGAAAISVLTEPKYFQGSLEDLRAVREAVSLPVLRKDFIIDPYQIYEA 90 (217)
T ss_pred EEEEecCCCCCCCc--CCCCCCHHHHHHHHHHcCCCEEEEEeCccccCCCHHHHHHHHHhcCCCEEECCeecCHHHHHHH
Confidence 34555554343211 2344578899999999999999665443 235889999999987767654 45689999
Q ss_pred HhcCCCeEEeecCCCC--ChHHHHHHHHHhCCccceeeCCCCCHHhHHHHHhh-cCceEEEEecCCCCCchhhhhhhhhH
Q psy11600 127 ADANVDQYTFHVEPVD--NVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIES-ADLVLIMTVEPGFGGQKFMQDMMPKV 203 (277)
Q Consensus 127 ~~~g~d~it~H~E~~~--~~~~~~~~I~~~g~~~g~~i~p~t~~~~i~~~i~~-~d~vl~mav~Pgt~gq~~~~~~l~kI 203 (277)
.++|||.+.+-...-. ...++.+..+..|+..-+.+ .+.+.+....+. ++++ .+++ ..++.+-.+ ++.+
T Consensus 91 ~~~Gad~v~l~~~~~~~~~~~~~~~~~~~~g~~~~v~v---~~~~e~~~~~~~g~~~i---~~t~-~~~~~~~~~-~~~~ 162 (217)
T cd00331 91 RAAGADAVLLIVAALDDEQLKELYELARELGMEVLVEV---HDEEELERALALGAKII---GINN-RDLKTFEVD-LNTT 162 (217)
T ss_pred HHcCCCEEEEeeccCCHHHHHHHHHHHHHcCCeEEEEE---CCHHHHHHHHHcCCCEE---EEeC-CCccccCcC-HHHH
Confidence 9999999987543000 12233333333333321122 244445444432 4444 2333 223233222 3556
Q ss_pred HHHHhhC-CCccEEEeCCCCc-CcHHHHHHccCCC---CCccccc-CHHHHHH
Q psy11600 204 KWLRENY-PTLNIEVDGGVGP-NTIDECAKCLTGF---GGQKFMQ-DMMPKVK 250 (277)
Q Consensus 204 ~~l~~~~-~~~~i~vdGgV~~-~tv~~~~~~gpg~---ggq~F~~-~~~~kI~ 250 (277)
.++++.. .+..+..-|||+- +++.++.++|++. |+..+.+ +..+.++
T Consensus 163 ~~l~~~~~~~~pvia~gGI~s~edi~~~~~~Ga~gvivGsai~~~~~p~~~~~ 215 (217)
T cd00331 163 ERLAPLIPKDVILVSESGISTPEDVKRLAEAGADAVLIGESLMRAPDPGAALR 215 (217)
T ss_pred HHHHHhCCCCCEEEEEcCCCCHHHHHHHHHcCCCEEEECHHHcCCCCHHHHHH
Confidence 6666655 3567788899964 8999999998885 6666654 3444443
No 58
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=97.75 E-value=0.0012 Score=58.33 Aligned_cols=158 Identities=14% Similarity=0.261 Sum_probs=104.9
Q ss_pred eEeeeccccCcccHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhc
Q psy11600 7 MIGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADA 86 (277)
Q Consensus 7 ~~~~s~~~~d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~a 86 (277)
.+.|=+-..|..+..+-.+.|.+.|++.+=+ ++. ...+.+.++.+|+.+|++.+=+...... ++++...++
T Consensus 16 ~~iaV~r~~~~~~a~~i~~al~~~Gi~~iEi-----tl~--~~~~~~~I~~l~~~~p~~~IGAGTVl~~--~~a~~a~~a 86 (212)
T PRK05718 16 PVVPVIVINKLEDAVPLAKALVAGGLPVLEV-----TLR--TPAALEAIRLIAKEVPEALIGAGTVLNP--EQLAQAIEA 86 (212)
T ss_pred CEEEEEEcCCHHHHHHHHHHHHHcCCCEEEE-----ecC--CccHHHHHHHHHHHCCCCEEEEeeccCH--HHHHHHHHc
Confidence 4556666666777777778888888887333 243 3368899999999999988888876655 678999999
Q ss_pred CCCeEEEeccCCCCCHHHHHHHHhhCCC--cccc-hhhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCCccceeeC
Q psy11600 87 NVDQYTFHVEPVDNVPQVIRQIKEAGMK--VGQV-LQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIK 163 (277)
Q Consensus 87 g~d~i~~H~e~~d~g~~~i~~i~~~~~~--~~d~-p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~i~ 163 (277)
|++++.. ....+.+++..++.... |.-+ |.+ +....++|++.+-+... ..
T Consensus 87 GA~Fivs----P~~~~~vi~~a~~~~i~~iPG~~TptE-i~~a~~~Ga~~vKlFPa---~~------------------- 139 (212)
T PRK05718 87 GAQFIVS----PGLTPPLLKAAQEGPIPLIPGVSTPSE-LMLGMELGLRTFKFFPA---EA------------------- 139 (212)
T ss_pred CCCEEEC----CCCCHHHHHHHHHcCCCEeCCCCCHHH-HHHHHHCCCCEEEEccc---hh-------------------
Confidence 9999842 22345667666554332 1111 444 44455555555444321 00
Q ss_pred CCCCHHhHHHHHhhcCceEEEEecCCCCCchhhhhhhhhHHHHHhhCCCccEEEeCCCCcCcHHHHHHcc
Q psy11600 164 PKTPVDVIAEYIESADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKCL 233 (277)
Q Consensus 164 p~t~~~~i~~~i~~~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~~~~~i~vdGgV~~~tv~~~~~~g 233 (277)
.+| .+-++.++..+|++.+..-|||+.+|+.+..++|
T Consensus 140 --------------------------~gg-------~~~lk~l~~p~p~~~~~ptGGV~~~ni~~~l~ag 176 (212)
T PRK05718 140 --------------------------SGG-------VKMLKALAGPFPDVRFCPTGGISPANYRDYLALP 176 (212)
T ss_pred --------------------------ccC-------HHHHHHHhccCCCCeEEEeCCCCHHHHHHHHhCC
Confidence 001 1235566666788999999999999999999988
No 59
>PRK00230 orotidine 5'-phosphate decarboxylase; Reviewed
Probab=97.72 E-value=0.00011 Score=65.73 Aligned_cols=171 Identities=16% Similarity=0.170 Sum_probs=105.9
Q ss_pred eeeeccCcHHhHHHHHhcCCCeEEEeccCCCC-----CHHHHHHHHhhC-CCccc-----c---hhhhhHHHHhcCCCeE
Q psy11600 69 THMMVQNPQQWIEPMADANVDQYTFHVEPVDN-----VPQVIRQIKEAG-MKVGQ-----V---LQDWIEPMADANVDQY 134 (277)
Q Consensus 69 ~Hlmv~~p~~~i~~l~~ag~d~i~~H~e~~d~-----g~~~i~~i~~~~-~~~~d-----~---p~~~i~~~~~~g~d~i 134 (277)
+-+=..++++.++.+.+.|.++. |++++++ |+++|+++|+.+ ..+.| + |..|++.+.++|+|++
T Consensus 7 lAlD~~~~~~~l~~~~~~~~~~~--~ikvg~~~f~~~G~~~i~~l~~~~~~i~~D~Kl~Di~~t~~~~i~~~~~~gad~i 84 (230)
T PRK00230 7 VALDFPSKEEALAFLDQLDPAVL--FVKVGMELFTAGGPQFVRELKQRGFKVFLDLKLHDIPNTVAKAVRALAKLGVDMV 84 (230)
T ss_pred EEcCCCCHHHHHHHHHhcCCccc--EEEEcHHHHHhcCHHHHHHHHhcCCCEEEEeehhhccccHHHHHHHHHHcCCCEE
Confidence 33445578888999999998887 8888864 999999999983 33443 3 7899999999999999
Q ss_pred EeecCCCCChHHHHHHHHHhCC----ccceeeCCCCCH--HhHH---------HHH----hh-cCceEEEEecCCCCCch
Q psy11600 135 TFHVEPVDNVPQVIRQIKEAGM----KVGLAIKPKTPV--DVIA---------EYI----ES-ADLVLIMTVEPGFGGQK 194 (277)
Q Consensus 135 t~H~E~~~~~~~~~~~I~~~g~----~~g~~i~p~t~~--~~i~---------~~i----~~-~d~vl~mav~Pgt~gq~ 194 (277)
|||.| .-...++...+... ..-+++-.=|+. +.+. +++ +. ...-.-..+.+.
T Consensus 85 tvH~~---ag~~~i~~~~~~~~~~~~~~~~~V~~lts~~~~~l~~~~~~~~~~~~v~~~a~~a~~~g~dgvv~~~----- 156 (230)
T PRK00230 85 NVHAS---GGPRMMKAAREALEPKSRPLLIAVTVLTSMDEEDLAELGINLSLEEQVLRLAKLAQEAGLDGVVCSA----- 156 (230)
T ss_pred EEccc---CCHHHHHHHHHHhhccCCCeEEEEEECCCCCHHHHHhCcCCCCHHHHHHHHHHHHHHcCCeEEEeCh-----
Confidence 99999 54454444443210 112222111121 2221 111 10 000000011111
Q ss_pred hhhhhhhhHHHHHhhCCCccEEEeCCCCcC-----------cHHHHHHccCCC---CCcccc-cCHHHHHHHHHhh
Q psy11600 195 FMQDMMPKVKWLRENYPTLNIEVDGGVGPN-----------TIDECAKCLTGF---GGQKFM-QDMMPKVKWLREN 255 (277)
Q Consensus 195 ~~~~~l~kI~~l~~~~~~~~i~vdGgV~~~-----------tv~~~~~~gpg~---ggq~F~-~~~~~kI~~l~~~ 255 (277)
..++.+++..+.--..|.+||+.. |..+.+++|+++ |...|. ++..+.++++++.
T Consensus 157 ------~~~~~ir~~~~~~~~~v~pGI~~~g~~~~dq~~~~~~~~ai~~Gad~iVvGR~I~~a~dP~~~a~~i~~~ 226 (230)
T PRK00230 157 ------QEAAAIREATGPDFLLVTPGIRPAGSDAGDQKRVMTPAQAIAAGSDYIVVGRPITQAADPAAAYEAILAE 226 (230)
T ss_pred ------HHHHHHHhhcCCceEEEcCCcCCCCCCcchHHHHhCHHHHHHcCCCEEEECCcccCCCCHHHHHHHHHHH
Confidence 124455555444344778999876 888899999997 888887 5777777777653
No 60
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=97.68 E-value=0.0015 Score=56.84 Aligned_cols=167 Identities=18% Similarity=0.244 Sum_probs=102.2
Q ss_pred HhHHHHHhcCCCeEEEeccCCC--C-CHHHHHHHHhhCCC---ccc--c---hhhhhHHHHhcCCCeEEeecCCCCChHH
Q psy11600 78 QWIEPMADANVDQYTFHVEPVD--N-VPQVIRQIKEAGMK---VGQ--V---LQDWIEPMADANVDQYTFHVEPVDNVPQ 146 (277)
Q Consensus 78 ~~i~~l~~ag~d~i~~H~e~~d--~-g~~~i~~i~~~~~~---~~d--~---p~~~i~~~~~~g~d~it~H~E~~~~~~~ 146 (277)
+.++.+.++|+|++-|-+.... . .+...+.+++.+.. .+- + ++...+...+.|+|.|-+|-+ ....
T Consensus 10 ed~~~a~~~Gvd~ig~i~~~~s~R~v~~~~a~~l~~~~~~~~~~V~v~vn~~~~~i~~ia~~~~~d~Vqlhg~---e~~~ 86 (203)
T cd00405 10 EDALAAAEAGADAIGFIFAPKSPRYVSPEQAREIVAALPPFVKRVGVFVNEDLEEILEIAEELGLDVVQLHGD---ESPE 86 (203)
T ss_pred HHHHHHHHcCCCEEEEecCCCCCCCCCHHHHHHHHHhCCCCCcEEEEEeCCCHHHHHHHHHhcCCCEEEECCC---CCHH
Confidence 3577888999999976653321 1 47777888877643 111 1 455556777889999999965 4334
Q ss_pred HHHHHHHh-C--CccceeeCCCCCHHhHHHHHhhcCceEEEEecCCC---CCchhhhhhhhhHHHHHhhCCCccEEEeCC
Q psy11600 147 VIRQIKEA-G--MKVGLAIKPKTPVDVIAEYIESADLVLIMTVEPGF---GGQKFMQDMMPKVKWLRENYPTLNIEVDGG 220 (277)
Q Consensus 147 ~~~~I~~~-g--~~~g~~i~p~t~~~~i~~~i~~~d~vl~mav~Pgt---~gq~~~~~~l~kI~~l~~~~~~~~i~vdGg 220 (277)
..+.+++. | ..+.+++...+..+....+-..+|++++=+-.++. .|+.+--+.+.++. ..+.+.+.||
T Consensus 87 ~~~~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~aD~il~dt~~~~~~Gg~g~~~~~~~l~~~~------~~~PvilaGG 160 (203)
T cd00405 87 YCAQLRARLGLPVIKAIRVKDEEDLEKAAAYAGEVDAILLDSKSGGGGGGTGKTFDWSLLRGLA------SRKPVILAGG 160 (203)
T ss_pred HHHHHHhhcCCcEEEEEecCChhhHHHhhhccccCCEEEEcCCCCCCCCCCcceEChHHhhccc------cCCCEEEECC
Confidence 55556542 2 23446665555444333444567888765533321 24455444443332 3567899999
Q ss_pred CCcCcHHHHHHcc-CCC---CCccccc---CHHHHHHHHH
Q psy11600 221 VGPNTIDECAKCL-TGF---GGQKFMQ---DMMPKVKWLR 253 (277)
Q Consensus 221 V~~~tv~~~~~~g-pg~---ggq~F~~---~~~~kI~~l~ 253 (277)
++.+++.++.+.+ |.. ++..... --.+|++++.
T Consensus 161 I~~~Nv~~~i~~~~~~gvdv~S~ie~~pg~kd~~ki~~~~ 200 (203)
T cd00405 161 LTPDNVAEAIRLVRPYGVDVSSGVETSPGIKDPEKIRAFI 200 (203)
T ss_pred CChHHHHHHHHhcCCCEEEcCCcccCCCCCcCHHHHHHHH
Confidence 9999999999877 653 5544443 2456666654
No 61
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=97.62 E-value=0.0037 Score=55.23 Aligned_cols=183 Identities=16% Similarity=0.116 Sum_probs=109.0
Q ss_pred EEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEEecc-CC-CC---CHHHHHHHHh
Q psy11600 36 HLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTFHVE-PV-DN---VPQVIRQIKE 110 (277)
Q Consensus 36 h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~H~e-~~-d~---g~~~i~~i~~ 110 (277)
-+|+++|..|.-.. | -+..+ +.+..+|.+..+.+.+.|++++++|-. .. .+ ...+++.+++
T Consensus 5 ~idl~~g~~v~~~~-G------~~~~~-------~~~~~dp~~~a~~~~~~g~d~l~v~dl~~~~~~~~~~~~~i~~i~~ 70 (234)
T cd04732 5 AIDLKDGKCVRLYQ-G------DYDKK-------TVYSDDPVEVAKKWEEAGAKWLHVVDLDGAKGGEPVNLELIEEIVK 70 (234)
T ss_pred EEEeECCEEEEeec-c------cCCCC-------eEECCCHHHHHHHHHHcCCCEEEEECCCccccCCCCCHHHHHHHHH
Confidence 48999998884321 1 01111 357889999999999999999988822 11 11 5678999988
Q ss_pred hCCCcccc-----hhhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCC-ccceeeC---------------CCCCHH
Q psy11600 111 AGMKVGQV-----LQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGM-KVGLAIK---------------PKTPVD 169 (277)
Q Consensus 111 ~~~~~~d~-----p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~-~~g~~i~---------------p~t~~~ 169 (277)
....|+.+ -.+.++.+.++|||.+.+-.++-.++..+.+..+..|. +.-+.+. ...+.+
T Consensus 71 ~~~~pv~~~GgI~~~e~~~~~~~~Gad~vvigs~~l~dp~~~~~i~~~~g~~~i~~sid~~~~~~~~~~~~~~~~~~~~~ 150 (234)
T cd04732 71 AVGIPVQVGGGIRSLEDIERLLDLGVSRVIIGTAAVKNPELVKELLKEYGGERIVVGLDAKDGKVATKGWLETSEVSLEE 150 (234)
T ss_pred hcCCCEEEeCCcCCHHHHHHHHHcCCCEEEECchHHhChHHHHHHHHHcCCceEEEEEEeeCCEEEECCCeeecCCCHHH
Confidence 87766655 24456777789999999876633333344455555543 1111221 222333
Q ss_pred hHHHHHhh-cCceEEEEecCCCCCchhhhhhhhhHHHHHhhCCCccEEEeCCCCc-CcHHHHHHccCCC
Q psy11600 170 VIAEYIES-ADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGP-NTIDECAKCLTGF 236 (277)
Q Consensus 170 ~i~~~i~~-~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~~~~~i~vdGgV~~-~tv~~~~~~gpg~ 236 (277)
.+..+.+. ++.++++.+......+... ++.++++++.. ++.+.+-||++- +.+..+.+.|++.
T Consensus 151 ~~~~~~~~ga~~iii~~~~~~g~~~g~~---~~~i~~i~~~~-~ipvi~~GGi~~~~di~~~~~~Ga~g 215 (234)
T cd04732 151 LAKRFEELGVKAIIYTDISRDGTLSGPN---FELYKELAAAT-GIPVIASGGVSSLDDIKALKELGVAG 215 (234)
T ss_pred HHHHHHHcCCCEEEEEeecCCCccCCCC---HHHHHHHHHhc-CCCEEEecCCCCHHHHHHHHHCCCCE
Confidence 33334333 7888888776532211222 33444444432 466888899974 3466677766653
No 62
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=97.49 E-value=0.0026 Score=57.92 Aligned_cols=171 Identities=11% Similarity=0.108 Sum_probs=106.2
Q ss_pred CcHHhHHHHHhcCCCeEEEeccCC--CCCHHHHHHHHhhCCCcccc-----hhhhhHHHHhcCCCeEEeecCCCC--ChH
Q psy11600 75 NPQQWIEPMADANVDQYTFHVEPV--DNVPQVIRQIKEAGMKVGQV-----LQDWIEPMADANVDQYTFHVEPVD--NVP 145 (277)
Q Consensus 75 ~p~~~i~~l~~ag~d~i~~H~e~~--d~g~~~i~~i~~~~~~~~d~-----p~~~i~~~~~~g~d~it~H~E~~~--~~~ 145 (277)
+|.++.+.+.++||+-+.+..|.. .|+.+.|+.+|+....|+.. +...+....++|||.|++-...-. ++.
T Consensus 71 ~~~~~A~~~~~~GA~aisvlte~~~f~g~~~~l~~v~~~v~iPvl~kdfi~~~~qi~~a~~~GAD~VlLi~~~l~~~~l~ 150 (260)
T PRK00278 71 DPVEIAKAYEAGGAACLSVLTDERFFQGSLEYLRAARAAVSLPVLRKDFIIDPYQIYEARAAGADAILLIVAALDDEQLK 150 (260)
T ss_pred CHHHHHHHHHhCCCeEEEEecccccCCCCHHHHHHHHHhcCCCEEeeeecCCHHHHHHHHHcCCCEEEEEeccCCHHHHH
Confidence 567788999999999999988864 35899999999988777754 455799999999999999886200 122
Q ss_pred HHHHHHHHhCCccceeeCCC-CCHHhHHHHHhhcCceEEEEecCCCCCchhhhhhhhhHHHHHhhCCC-ccEEEeCCC-C
Q psy11600 146 QVIRQIKEAGMKVGLAIKPK-TPVDVIAEYIESADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPT-LNIEVDGGV-G 222 (277)
Q Consensus 146 ~~~~~I~~~g~~~g~~i~p~-t~~~~i~~~i~~~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~~~-~~i~vdGgV-~ 222 (277)
++++..++.|+. .-.. -..+++.... ..+.- ++.+|+-. .+.| +.-++...++.+..++ .-+..-||+ +
T Consensus 151 ~li~~a~~lGl~----~lvevh~~~E~~~A~-~~gad-iIgin~rd-l~~~-~~d~~~~~~l~~~~p~~~~vIaegGI~t 222 (260)
T PRK00278 151 ELLDYAHSLGLD----VLVEVHDEEELERAL-KLGAP-LIGINNRN-LKTF-EVDLETTERLAPLIPSDRLVVSESGIFT 222 (260)
T ss_pred HHHHHHHHcCCe----EEEEeCCHHHHHHHH-HcCCC-EEEECCCC-cccc-cCCHHHHHHHHHhCCCCCEEEEEeCCCC
Confidence 334444443311 1111 1223333333 22222 23456521 1222 2225566666666664 233334555 7
Q ss_pred cCcHHHHHHccCCC---CCccccc-CHHHHHHHHH
Q psy11600 223 PNTIDECAKCLTGF---GGQKFMQ-DMMPKVKWLR 253 (277)
Q Consensus 223 ~~tv~~~~~~gpg~---ggq~F~~-~~~~kI~~l~ 253 (277)
.+++..+.++|++. |+....+ +..+.++++.
T Consensus 223 ~ed~~~~~~~Gad~vlVGsaI~~~~dp~~~~~~l~ 257 (260)
T PRK00278 223 PEDLKRLAKAGADAVLVGESLMRADDPGAALRELL 257 (260)
T ss_pred HHHHHHHHHcCCCEEEECHHHcCCCCHHHHHHHHh
Confidence 99999999999885 7777774 5666666554
No 63
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=97.46 E-value=0.011 Score=53.77 Aligned_cols=178 Identities=17% Similarity=0.248 Sum_probs=119.0
Q ss_pred HHHHhcCCCCeeeeeeeccCcHHh-----HHHHHhcCCCeEEEecc---C-CCC-------------------CHHHHHH
Q psy11600 56 KCLRNKIPKAFFETHMMVQNPQQW-----IEPMADANVDQYTFHVE---P-VDN-------------------VPQVIRQ 107 (277)
Q Consensus 56 ~~l~~~~~~~~~d~Hlmv~~p~~~-----i~~l~~ag~d~i~~H~e---~-~d~-------------------g~~~i~~ 107 (277)
+++++. -+.-+-.|++..+|... ++.+.+.|+|++-+-+= + .|| ..+.+++
T Consensus 4 ~~~~~~-~~~~li~yi~aG~P~~~~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~~AL~~G~~~~~~~~~~~~ 82 (258)
T PRK13111 4 AALKAE-GRKALIPYITAGDPDLETSLEIIKALVEAGADIIELGIPFSDPVADGPVIQAASLRALAAGVTLADVFELVRE 82 (258)
T ss_pred HHHHhc-CCccEEEEEeCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 445543 34568999999987653 67788899999955432 2 244 3566777
Q ss_pred HHhh-CCCc-ccc----------hhhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCCccceeeCCCCCHHhHHHHH
Q psy11600 108 IKEA-GMKV-GQV----------LQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYI 175 (277)
Q Consensus 108 i~~~-~~~~-~d~----------p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~i~p~t~~~~i~~~i 175 (277)
+|+. ...| +.| .++|++.++++|+|-+.+.==|-+......+..++.|+..-.-+.|.|+-+.+..+.
T Consensus 83 ~r~~~~~~p~vlm~Y~N~i~~~G~e~f~~~~~~aGvdGviipDLp~ee~~~~~~~~~~~gl~~I~lvap~t~~eri~~i~ 162 (258)
T PRK13111 83 IREKDPTIPIVLMTYYNPIFQYGVERFAADAAEAGVDGLIIPDLPPEEAEELRAAAKKHGLDLIFLVAPTTTDERLKKIA 162 (258)
T ss_pred HHhcCCCCCEEEEecccHHhhcCHHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHH
Confidence 7733 3334 222 688999999999998888521111223455666777877667788999888887776
Q ss_pred hh-cCceEEEEecCCCCCc-hhhhhhhhhHHHHHhhCCCccEEEeCCC-CcCcHHHHHHccCCC
Q psy11600 176 ES-ADLVLIMTVEPGFGGQ-KFMQDMMPKVKWLRENYPTLNIEVDGGV-GPNTIDECAKCLTGF 236 (277)
Q Consensus 176 ~~-~d~vl~mav~Pgt~gq-~~~~~~l~kI~~l~~~~~~~~i~vdGgV-~~~tv~~~~~~gpg~ 236 (277)
.. -+++-.+++..-|+.+ .+-++..+.++.+++.. ++-+.+-+|| +.+++.++.+. ++.
T Consensus 163 ~~s~gfIY~vs~~GvTG~~~~~~~~~~~~i~~vk~~~-~~pv~vGfGI~~~e~v~~~~~~-ADG 224 (258)
T PRK13111 163 SHASGFVYYVSRAGVTGARSADAADLAELVARLKAHT-DLPVAVGFGISTPEQAAAIAAV-ADG 224 (258)
T ss_pred HhCCCcEEEEeCCCCCCcccCCCccHHHHHHHHHhcC-CCcEEEEcccCCHHHHHHHHHh-CCE
Confidence 55 4667767776545543 23345555777777754 6778899999 66888888775 663
No 64
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=97.43 E-value=0.007 Score=52.24 Aligned_cols=166 Identities=16% Similarity=0.246 Sum_probs=100.9
Q ss_pred EeeeccccCcccHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcC
Q psy11600 8 IGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADAN 87 (277)
Q Consensus 8 ~~~s~~~~d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag 87 (277)
+.|=+=..|..+..+-++.+.+.|++++-++.-+.. ..+.++.+++.+|++.+-+.... + .+.++...++|
T Consensus 6 ~~~i~r~~~~~~~~~~~~~l~~~G~~~vev~~~~~~-------~~~~i~~l~~~~~~~~iGag~v~-~-~~~~~~a~~~G 76 (190)
T cd00452 6 LVAVLRGDDAEDALALAEALIEGGIRAIEITLRTPG-------ALEAIRALRKEFPEALIGAGTVL-T-PEQADAAIAAG 76 (190)
T ss_pred EEEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCChh-------HHHHHHHHHHHCCCCEEEEEeCC-C-HHHHHHHHHcC
Confidence 445555567777788888999999999999866533 34589999988877655554433 1 34678888999
Q ss_pred CCeEEEeccCCCCCHHHHHHHHhhCCCcccchhhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCCccceeeCCCCC
Q psy11600 88 VDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTP 167 (277)
Q Consensus 88 ~d~i~~H~e~~d~g~~~i~~i~~~~~~~~d~p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~i~p~t~ 167 (277)
++.+ |.-..+ +.+++. .+..|+..-.|+. +
T Consensus 77 a~~i--~~p~~~--~~~~~~-------------------------------------------~~~~~~~~i~gv~---t 106 (190)
T cd00452 77 AQFI--VSPGLD--PEVVKA-------------------------------------------ANRAGIPLLPGVA---T 106 (190)
T ss_pred CCEE--EcCCCC--HHHHHH-------------------------------------------HHHcCCcEECCcC---C
Confidence 9999 643322 333333 3332221111111 2
Q ss_pred HHhHHHHHh-hcCceEEEEecCCCCCchhhhhhhhhHHHHHhhCCCccEEEeCCCCcCcHHHHHHccCCC---CCccc
Q psy11600 168 VDVIAEYIE-SADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKCLTGF---GGQKF 241 (277)
Q Consensus 168 ~~~i~~~i~-~~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~~~~~i~vdGgV~~~tv~~~~~~gpg~---ggq~F 241 (277)
++++....+ .+|++-+ .|..+ . -.+-++.++...+++.+..-|||+.+++.++.++|++. ++..|
T Consensus 107 ~~e~~~A~~~Gad~i~~---~p~~~---~---g~~~~~~l~~~~~~~p~~a~GGI~~~n~~~~~~~G~~~v~v~s~i~ 175 (190)
T cd00452 107 PTEIMQALELGADIVKL---FPAEA---V---GPAYIKALKGPFPQVRFMPTGGVSLDNAAEWLAAGVVAVGGGSLLP 175 (190)
T ss_pred HHHHHHHHHCCCCEEEE---cCCcc---c---CHHHHHHHHhhCCCCeEEEeCCCCHHHHHHHHHCCCEEEEEchhcc
Confidence 222222221 1344332 33211 1 12335566666777889999999999999999999885 44444
No 65
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=97.34 E-value=0.0077 Score=53.81 Aligned_cols=187 Identities=11% Similarity=0.130 Sum_probs=113.6
Q ss_pred EEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEE-eccCCCC---CHHHHHHHHhh
Q psy11600 36 HLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTF-HVEPVDN---VPQVIRQIKEA 111 (277)
Q Consensus 36 h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~-H~e~~d~---g~~~i~~i~~~ 111 (277)
-+|+++|..|.-...- +..++.+ -.-..+..+|.+.++.+.+.|++++|+ .++...+ ...+|+++.+.
T Consensus 5 ~iDl~~G~~V~~~~G~-------~~~~~p~-~~~~~~~~dp~~~a~~~~~~g~~~l~i~DLd~~~~~~~n~~~i~~i~~~ 76 (233)
T cd04723 5 VIDLKDGVVVHGVGGD-------RDNYRPI-TSNLCSTSDPLDVARAYKELGFRGLYIADLDAIMGRGDNDEAIRELAAA 76 (233)
T ss_pred EEECcCCEEEEeeccC-------hhhcccc-ccCcccCCCHHHHHHHHHHCCCCEEEEEeCccccCCCccHHHHHHHHHh
Confidence 3899999888543321 1111111 122234679999999999999999932 1333222 56788888887
Q ss_pred CCCcccc-----hhhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCC-ccceeeCC-----------CCCHHhHHHH
Q psy11600 112 GMKVGQV-----LQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGM-KVGLAIKP-----------KTPVDVIAEY 174 (277)
Q Consensus 112 ~~~~~d~-----p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~-~~g~~i~p-----------~t~~~~i~~~ 174 (277)
+..++.+ -.+-++.+.++||+.+.+-.|+.++ .-+.+.+++.|- +.-+++.. .++.+.+..+
T Consensus 77 ~~~~v~vgGGir~~edv~~~l~~Ga~~viigt~~~~~-~~~~~~~~~~~~~~iivslD~~~~~~~~~~~~~~~~~~~~~~ 155 (233)
T cd04723 77 WPLGLWVDGGIRSLENAQEWLKRGASRVIVGTETLPS-DDDEDRLAALGEQRLVLSLDFRGGQLLKPTDFIGPEELLRRL 155 (233)
T ss_pred CCCCEEEecCcCCHHHHHHHHHcCCCeEEEcceeccc-hHHHHHHHhcCCCCeEEEEeccCCeeccccCcCCHHHHHHHH
Confidence 7667665 5667788889999999999884443 334555666654 22333332 2233444444
Q ss_pred HhhcCceEEEEecCCCCCchhhhhhhhhHHHHHhhCCCccEEEeCCCCc-CcHHHHHHccCC
Q psy11600 175 IESADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGP-NTIDECAKCLTG 235 (277)
Q Consensus 175 i~~~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~~~~~i~vdGgV~~-~tv~~~~~~gpg 235 (277)
-..++.++++.++....++....+++.++.. . ..+.+.+-||+.- +.+..+.+.|+.
T Consensus 156 ~~~~~~li~~di~~~G~~~g~~~~~~~~i~~---~-~~ipvi~~GGi~s~edi~~l~~~G~~ 213 (233)
T cd04723 156 AKWPEELIVLDIDRVGSGQGPDLELLERLAA---R-ADIPVIAAGGVRSVEDLELLKKLGAS 213 (233)
T ss_pred HHhCCeEEEEEcCccccCCCcCHHHHHHHHH---h-cCCCEEEeCCCCCHHHHHHHHHcCCC
Confidence 4446778888887644444444444444433 2 3567888898864 455556666655
No 66
>PLN02591 tryptophan synthase
Probab=97.30 E-value=0.017 Score=52.32 Aligned_cols=169 Identities=15% Similarity=0.248 Sum_probs=116.0
Q ss_pred eeeeeeeccCcHH-----hHHHHHhcCCCeEEEec---cC-CCC-------------------CHHHHHHHHhhCCCc-c
Q psy11600 66 FFETHMMVQNPQQ-----WIEPMADANVDQYTFHV---EP-VDN-------------------VPQVIRQIKEAGMKV-G 116 (277)
Q Consensus 66 ~~d~Hlmv~~p~~-----~i~~l~~ag~d~i~~H~---e~-~d~-------------------g~~~i~~i~~~~~~~-~ 116 (277)
.+-.+++..+|.. .++.+.++|+|.+-+-+ |+ .|| ..++++.+|+....| +
T Consensus 3 ~li~yi~aG~P~~e~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~~~~~~r~~~~~p~i 82 (250)
T PLN02591 3 AFIPYITAGDPDLDTTAEALRLLDACGADVIELGVPYSDPLADGPVIQAAATRALEKGTTLDSVISMLKEVAPQLSCPIV 82 (250)
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCEE
Confidence 3678899998765 37778899999995543 22 244 456677777554444 3
Q ss_pred cc----------hhhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCCccceeeCCCCCHHhHHHHHhhc-CceEEEE
Q psy11600 117 QV----------LQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESA-DLVLIMT 185 (277)
Q Consensus 117 d~----------p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~i~p~t~~~~i~~~i~~~-d~vl~ma 185 (277)
.| .++|++.+.++|+|-+.+.==|-+......+..++.|+..=.-+.|.|+-+.+..+.... +++-.++
T Consensus 83 lm~Y~N~i~~~G~~~F~~~~~~aGv~GviipDLP~ee~~~~~~~~~~~gl~~I~lv~Ptt~~~ri~~ia~~~~gFIY~Vs 162 (250)
T PLN02591 83 LFTYYNPILKRGIDKFMATIKEAGVHGLVVPDLPLEETEALRAEAAKNGIELVLLTTPTTPTERMKAIAEASEGFVYLVS 162 (250)
T ss_pred EEecccHHHHhHHHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHhCCCcEEEee
Confidence 33 588999999999998888632111234566677777777666777999888888877654 7777667
Q ss_pred ecCCCCCc--hhhhhhhhhHHHHHhhCCCccEEEeCCCC-cCcHHHHHHccCCC
Q psy11600 186 VEPGFGGQ--KFMQDMMPKVKWLRENYPTLNIEVDGGVG-PNTIDECAKCLTGF 236 (277)
Q Consensus 186 v~Pgt~gq--~~~~~~l~kI~~l~~~~~~~~i~vdGgV~-~~tv~~~~~~gpg~ 236 (277)
.. |+.|. .+-+++.+.++.+++. .++-+.+--||+ .+++..+.+.|++.
T Consensus 163 ~~-GvTG~~~~~~~~~~~~i~~vk~~-~~~Pv~vGFGI~~~e~v~~~~~~GADG 214 (250)
T PLN02591 163 ST-GVTGARASVSGRVESLLQELKEV-TDKPVAVGFGISKPEHAKQIAGWGADG 214 (250)
T ss_pred CC-CCcCCCcCCchhHHHHHHHHHhc-CCCceEEeCCCCCHHHHHHHHhcCCCE
Confidence 64 44443 2234444557777774 577787877888 78888888888884
No 67
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=97.24 E-value=0.015 Score=51.17 Aligned_cols=150 Identities=18% Similarity=0.169 Sum_probs=95.3
Q ss_pred cHHhHHHHHhcCCCeEEEeccCCCCCHHHHHHHHhhCCCccc-----c-hhhhhHHHHhcCCCeEEeecCCCCChHHHHH
Q psy11600 76 PQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQ-----V-LQDWIEPMADANVDQYTFHVEPVDNVPQVIR 149 (277)
Q Consensus 76 p~~~i~~l~~ag~d~i~~H~e~~d~g~~~i~~i~~~~~~~~d-----~-p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~ 149 (277)
..+.++.+.+.|+..+-+=... ....+.|+.+++......- + -.+.++...++||+++-.... + .++.+
T Consensus 24 ~~~~~~a~~~gGi~~iEvt~~~-~~~~~~i~~l~~~~~~~~~iGaGTV~~~~~~~~a~~aGA~fivsp~~---~-~~v~~ 98 (206)
T PRK09140 24 ALAHVGALIEAGFRAIEIPLNS-PDPFDSIAALVKALGDRALIGAGTVLSPEQVDRLADAGGRLIVTPNT---D-PEVIR 98 (206)
T ss_pred HHHHHHHHHHCCCCEEEEeCCC-ccHHHHHHHHHHHcCCCcEEeEEecCCHHHHHHHHHcCCCEEECCCC---C-HHHHH
Confidence 3445777888899988443222 2355567777665432211 2 466779999999999877543 3 46777
Q ss_pred HHHHhCCccceeeCCCCCHHhHHHH-HhhcCceEEEEecCCCCCchhhhhhhhhHHHHHhhCC-CccEEEeCCCCcCcHH
Q psy11600 150 QIKEAGMKVGLAIKPKTPVDVIAEY-IESADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYP-TLNIEVDGGVGPNTID 227 (277)
Q Consensus 150 ~I~~~g~~~g~~i~p~t~~~~i~~~-i~~~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~~-~~~i~vdGgV~~~tv~ 227 (277)
..+..|+....| +.|+ +++... -..+|++- +-|... + -++.++.++...+ .+.+..-|||+.+++.
T Consensus 99 ~~~~~~~~~~~G--~~t~-~E~~~A~~~Gad~vk---~Fpa~~---~---G~~~l~~l~~~~~~~ipvvaiGGI~~~n~~ 166 (206)
T PRK09140 99 RAVALGMVVMPG--VATP-TEAFAALRAGAQALK---LFPASQ---L---GPAGIKALRAVLPPDVPVFAVGGVTPENLA 166 (206)
T ss_pred HHHHCCCcEEcc--cCCH-HHHHHHHHcCCCEEE---ECCCCC---C---CHHHHHHHHhhcCCCCeEEEECCCCHHHHH
Confidence 777766555555 3444 333333 23466664 344221 1 1344666666665 6889999999999999
Q ss_pred HHHHccCCC---CCcccc
Q psy11600 228 ECAKCLTGF---GGQKFM 242 (277)
Q Consensus 228 ~~~~~gpg~---ggq~F~ 242 (277)
++.++|++. ++..|.
T Consensus 167 ~~~~aGa~~vav~s~l~~ 184 (206)
T PRK09140 167 PYLAAGAAGFGLGSALYR 184 (206)
T ss_pred HHHHCCCeEEEEehHhcc
Confidence 999999996 666665
No 68
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.17 E-value=0.011 Score=52.70 Aligned_cols=180 Identities=18% Similarity=0.150 Sum_probs=104.8
Q ss_pred EeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEEeccCCC----C---CHHHHHHHH
Q psy11600 37 LDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTFHVEPVD----N---VPQVIRQIK 109 (277)
Q Consensus 37 ~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~H~e~~d----~---g~~~i~~i~ 109 (277)
+|++||..|.-..+- |. +.. .+..+|.+.++.+.+.|++++ |+--.+ + -...|+.+.
T Consensus 9 idl~~g~~v~~~~g~-------~~---~~~----~~~~~~~e~a~~~~~~G~~~l--~i~dl~~~~~~~~~~~~~i~~i~ 72 (241)
T PRK13585 9 VDMKGGKCVQLVQGE-------PG---TET----VSYGDPVEVAKRWVDAGAETL--HLVDLDGAFEGERKNAEAIEKII 72 (241)
T ss_pred EEeECCeEEEeeccc-------cC---Cce----EECCCHHHHHHHHHHcCCCEE--EEEechhhhcCCcccHHHHHHHH
Confidence 799999988433321 11 111 467899999999999999998 643222 1 456777777
Q ss_pred hhCCCcccc---h--hhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCCc-cceeeCC--------------CCCHH
Q psy11600 110 EAGMKVGQV---L--QDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMK-VGLAIKP--------------KTPVD 169 (277)
Q Consensus 110 ~~~~~~~d~---p--~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~-~g~~i~p--------------~t~~~ 169 (277)
+....++.+ . .+-++.+.++||+.+.+-.+..+++..+.+..+..|.. .-+++.. +....
T Consensus 73 ~~~~~~l~v~GGi~~~~~~~~~~~~Ga~~v~iGs~~~~~~~~~~~i~~~~g~~~i~~sid~~~~~v~~~g~~~~~~~~~~ 152 (241)
T PRK13585 73 EAVGVPVQLGGGIRSAEDAASLLDLGVDRVILGTAAVENPEIVRELSEEFGSERVMVSLDAKDGEVVIKGWTEKTGYTPV 152 (241)
T ss_pred HHcCCcEEEcCCcCCHHHHHHHHHcCCCEEEEChHHhhChHHHHHHHHHhCCCcEEEEEEeeCCEEEECCCcccCCCCHH
Confidence 777666655 2 33467777899999887665222223344444444321 1122221 11222
Q ss_pred hHHHHHhh--cCceEEEEecCCCCCchhhhhhhhhHHHHHhhCCCccEEEeCCCC-cCcHHHHHHccCCC
Q psy11600 170 VIAEYIES--ADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVG-PNTIDECAKCLTGF 236 (277)
Q Consensus 170 ~i~~~i~~--~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~~~~~i~vdGgV~-~~tv~~~~~~gpg~ 236 (277)
.+.+.+.+ ++.+++..+.+....+.. -++.++++.+.. ++.+.+-|||+ .+.+..+.+.|++.
T Consensus 153 ~~~~~~~~~G~~~i~~~~~~~~g~~~g~---~~~~i~~i~~~~-~iPvia~GGI~~~~di~~~~~~Ga~g 218 (241)
T PRK13585 153 EAAKRFEELGAGSILFTNVDVEGLLEGV---NTEPVKELVDSV-DIPVIASGGVTTLDDLRALKEAGAAG 218 (241)
T ss_pred HHHHHHHHcCCCEEEEEeecCCCCcCCC---CHHHHHHHHHhC-CCCEEEeCCCCCHHHHHHHHHcCCCE
Confidence 33333333 466777777553211111 123345555433 47789999999 77888888888774
No 69
>cd04725 OMP_decarboxylase_like Orotidine 5'-phosphate decarboxylase (ODCase) is a dimeric enzyme that decarboxylates orotidine 5'-monophosphate (OMP) to form uridine 5'-phosphate (UMP), an essential step in the pyrimidine biosynthetic pathway. In mammals, UMP synthase contains two domains: the orotate phosphoribosyltransferase (OPRTase) domain that catalyzes the transfer of phosphoribosyl 5'-pyrophosphate (PRPP) to orotate to form OMP, and the orotidine-5'-phosphate decarboxylase (ODCase) domain that decarboxylates OMP to form UMP.
Probab=97.14 E-value=0.022 Score=50.25 Aligned_cols=90 Identities=16% Similarity=0.104 Sum_probs=70.1
Q ss_pred ccccCcccHHHHHHHHHHcCCCEEEEeccc--cccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHh----HHHHHh
Q psy11600 12 ILNSDLSNLHSESQNLLDSGADYLHLDVMD--GTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQW----IEPMAD 85 (277)
Q Consensus 12 ~~~~d~~~l~~~~~~l~~~~~~~~h~DimD--g~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~----i~~l~~ 85 (277)
++++|..++++.++.+++. .++ +|+.. ..|. ..+|+++++.||+. ..++-++++..|..+. ++.+.+
T Consensus 2 ivALD~~~~~~a~~i~~~~-~~~--v~~iKvg~~l~--~~~g~~~i~~l~~~--~~~i~~DlK~~DIg~tv~~~~~~~~~ 74 (216)
T cd04725 2 IVALDPPDEEFALALIDAL-GPY--VCAVKVGLELF--EAAGPEIVKELREL--GFLVFLDLKLGDIPNTVAAAAEALLG 74 (216)
T ss_pred EEEeCCCCHHHHHHHHHhc-CCc--ccEEEECHHHH--HhcCHHHHHHHHHC--CCcEEEEeecCchHHHHHHHHHHHHh
Confidence 4688999999999988876 555 67877 3344 44899999999986 3789999999997764 445678
Q ss_pred cCCCeEEEeccCCCCCHHHHHHHHhh
Q psy11600 86 ANVDQYTFHVEPVDNVPQVIRQIKEA 111 (277)
Q Consensus 86 ag~d~i~~H~e~~d~g~~~i~~i~~~ 111 (277)
.|+|++|+|. -.|...+++..+.
T Consensus 75 ~gad~~Tvh~---~~G~~~l~~~~~~ 97 (216)
T cd04725 75 LGADAVTVHP---YGGSDMLKAALEA 97 (216)
T ss_pred cCCCEEEECC---cCCHHHHHHHHHH
Confidence 8999999995 3467777777654
No 70
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=97.11 E-value=0.045 Score=49.89 Aligned_cols=176 Identities=14% Similarity=0.276 Sum_probs=115.2
Q ss_pred HHHHhcCCCCeeeeeeeccCcHH-----hHHHHHhcCCCeEEEec---cC-CCC-------------------CHHHHHH
Q psy11600 56 KCLRNKIPKAFFETHMMVQNPQQ-----WIEPMADANVDQYTFHV---EP-VDN-------------------VPQVIRQ 107 (277)
Q Consensus 56 ~~l~~~~~~~~~d~Hlmv~~p~~-----~i~~l~~ag~d~i~~H~---e~-~d~-------------------g~~~i~~ 107 (277)
+++|+. -+..+-.+++..+|.. .++.+.++|+|.+-+-+ |+ .|| ..++++.
T Consensus 2 ~~lk~~-~~~~li~yitaG~P~~~~~~~~~~~l~~~GaD~iEiGiPfSDP~ADGpvIq~A~~rAL~~G~~~~~~~~~~~~ 80 (259)
T PF00290_consen 2 AELKKE-GRKALIPYITAGYPDLETTLEILKALEEAGADIIEIGIPFSDPVADGPVIQKASQRALKNGFTLEKIFELVKE 80 (259)
T ss_dssp HHHHHT-TBTEEEEEEETTSSSHHHHHHHHHHHHHTTBSSEEEE--SSSCTTSSHHHHHHHHHHHHTT--HHHHHHHHHH
T ss_pred hhHHhC-CCCeEEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 356654 5678899999999844 57888899999985543 22 244 4566788
Q ss_pred HH-hhCCCcc-cc----------hhhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCCccceeeCCCCCHHhHHHHH
Q psy11600 108 IK-EAGMKVG-QV----------LQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYI 175 (277)
Q Consensus 108 i~-~~~~~~~-d~----------p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~i~p~t~~~~i~~~i 175 (277)
+| +.+..|+ .| .++|++.+.++|+|-+.+.==|-+....+.+.+++.|+..=.=+.|.|+-+.+..+.
T Consensus 81 ir~~~~~~pivlm~Y~N~i~~~G~e~F~~~~~~aGvdGlIipDLP~ee~~~~~~~~~~~gl~~I~lv~p~t~~~Ri~~i~ 160 (259)
T PF00290_consen 81 IRKKEPDIPIVLMTYYNPIFQYGIERFFKEAKEAGVDGLIIPDLPPEESEELREAAKKHGLDLIPLVAPTTPEERIKKIA 160 (259)
T ss_dssp HHHHCTSSEEEEEE-HHHHHHH-HHHHHHHHHHHTEEEEEETTSBGGGHHHHHHHHHHTT-EEEEEEETTS-HHHHHHHH
T ss_pred HhccCCCCCEEEEeeccHHhccchHHHHHHHHHcCCCEEEEcCCChHHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHH
Confidence 88 5555554 22 578999999999999988632111344666777888877777778999999999988
Q ss_pred hh-cCceEEEEecCCCCCch-hhhhhhhhHHHHHhhCCCccEEEeCCCCcCcHHHHHH--ccCC
Q psy11600 176 ES-ADLVLIMTVEPGFGGQK-FMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAK--CLTG 235 (277)
Q Consensus 176 ~~-~d~vl~mav~Pgt~gq~-~~~~~l~kI~~l~~~~~~~~i~vdGgV~~~tv~~~~~--~gpg 235 (277)
+. -+++-.++...-|+.+. +..++.+.++.++++. ++-+.+ |-.+.|-+.+.+ .++|
T Consensus 161 ~~a~gFiY~vs~~GvTG~~~~~~~~l~~~i~~ik~~~-~~Pv~v--GFGI~~~e~~~~~~~~aD 221 (259)
T PF00290_consen 161 KQASGFIYLVSRMGVTGSRTELPDELKEFIKRIKKHT-DLPVAV--GFGISTPEQAKKLAAGAD 221 (259)
T ss_dssp HH-SSEEEEESSSSSSSTTSSCHHHHHHHHHHHHHTT-SS-EEE--ESSS-SHHHHHHHHTTSS
T ss_pred HhCCcEEEeeccCCCCCCcccchHHHHHHHHHHHhhc-CcceEE--ecCCCCHHHHHHHHccCC
Confidence 66 56666667654455433 4456777788887765 555554 333345444444 4455
No 71
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=96.98 E-value=0.045 Score=47.35 Aligned_cols=169 Identities=17% Similarity=0.140 Sum_probs=96.8
Q ss_pred eEeeeccccCcccHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhc
Q psy11600 7 MIGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADA 86 (277)
Q Consensus 7 ~~~~s~~~~d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~a 86 (277)
.+.|=+-.-|..+..+-++.+.+.|++++.+=.=+- -..+.++.+++.++....-...... . +.++...++
T Consensus 13 ~~~~v~r~~~~~~~~~~~~~~~~~Gv~~vqlr~k~~-------~~~e~~~~~~~~~~~~~~g~gtvl~-~-d~~~~A~~~ 83 (187)
T PRK07455 13 RAIAVIRAPDLELGLQMAEAVAAGGMRLIEITWNSD-------QPAELISQLREKLPECIIGTGTILT-L-EDLEEAIAA 83 (187)
T ss_pred CEEEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCCC-------CHHHHHHHHHHhCCCcEEeEEEEEc-H-HHHHHHHHc
Confidence 456666667777788888889999999966632111 1346777888766655444433332 3 788889999
Q ss_pred CCCeEEEeccCCCCCHHHHHHHHhhCCCcccchhhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCCccceeeCCCC
Q psy11600 87 NVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKT 166 (277)
Q Consensus 87 g~d~i~~H~e~~d~g~~~i~~i~~~~~~~~d~p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~i~p~t 166 (277)
|+|.+ |.-..+ +..++.- +..+...=.| ..|
T Consensus 84 gAdgv--~~p~~~--~~~~~~~-------------------------------------------~~~~~~~i~G--~~t 114 (187)
T PRK07455 84 GAQFC--FTPHVD--PELIEAA-------------------------------------------VAQDIPIIPG--ALT 114 (187)
T ss_pred CCCEE--ECCCCC--HHHHHHH-------------------------------------------HHcCCCEEcC--cCC
Confidence 99999 644333 2222221 1111110011 111
Q ss_pred CHHhHHHHH-hhcCceEEEEecCCCCCchhhhhhhhhHHHHHhhCCCccEEEeCCCCcCcHHHHHHccCCC---CCcccc
Q psy11600 167 PVDVIAEYI-ESADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKCLTGF---GGQKFM 242 (277)
Q Consensus 167 ~~~~i~~~i-~~~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~~~~~i~vdGgV~~~tv~~~~~~gpg~---ggq~F~ 242 (277)
+- ++.... .-+|++-+ -|..+ .. =++-++.++...+++.+..-|||+.+++.++.++|+.. +|..|.
T Consensus 115 ~~-e~~~A~~~Gadyv~~---Fpt~~---~~--G~~~l~~~~~~~~~ipvvaiGGI~~~n~~~~l~aGa~~vav~s~i~~ 185 (187)
T PRK07455 115 PT-EIVTAWQAGASCVKV---FPVQA---VG--GADYIKSLQGPLGHIPLIPTGGVTLENAQAFIQAGAIAVGLSGQLFP 185 (187)
T ss_pred HH-HHHHHHHCCCCEEEE---CcCCc---cc--CHHHHHHHHhhCCCCcEEEeCCCCHHHHHHHHHCCCeEEEEehhccc
Confidence 11 111111 22344322 33210 00 03346666666778889999999999999999998885 555443
No 72
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=96.96 E-value=0.016 Score=52.98 Aligned_cols=159 Identities=14% Similarity=0.138 Sum_probs=97.3
Q ss_pred CCCeeeeeeeccCcHHh---HHHHHhcCCCeEEEeccCCCC------------CHHHHHHHHhhCCCcccc---------
Q psy11600 63 PKAFFETHMMVQNPQQW---IEPMADANVDQYTFHVEPVDN------------VPQVIRQIKEAGMKVGQV--------- 118 (277)
Q Consensus 63 ~~~~~d~Hlmv~~p~~~---i~~l~~ag~d~i~~H~e~~d~------------g~~~i~~i~~~~~~~~d~--------- 118 (277)
++.++-+.++-.+++++ ++.+.++|+|.+-+++-.-.. --++++++|+....|+.+
T Consensus 97 ~~~pvi~si~g~~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~~~~~~ 176 (289)
T cd02810 97 PGQPLIASVGGSSKEDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAVDIPLLVKLSPYFDLE 176 (289)
T ss_pred CCCeEEEEeccCCHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHccCCCEEEEeCCCCCHH
Confidence 57899999998888776 666677899999888654221 234688888876555543
Q ss_pred -hhhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCCccceeeCCCCCHHhHHHHHhhcCceEEEEecCCCCCchhhh
Q psy11600 119 -LQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIMTVEPGFGGQKFMQ 197 (277)
Q Consensus 119 -p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~i~p~t~~~~i~~~i~~~d~vl~mav~Pgt~gq~~~~ 197 (277)
..+.++.+.++|+|.+++|-- ....... .. . ..++. ....-|.+|....+
T Consensus 177 ~~~~~a~~l~~~Gad~i~~~~~---~~~~~~~-~~------~--~~~~~-----------------~~~~~g~sg~~~~~ 227 (289)
T cd02810 177 DIVELAKAAERAGADGLTAINT---ISGRVVD-LK------T--VGPGP-----------------KRGTGGLSGAPIRP 227 (289)
T ss_pred HHHHHHHHHHHcCCCEEEEEcc---cCcccee-cc------c--Ccccc-----------------CCCCCccCcHHHHH
Confidence 245677788999999999842 1110000 00 0 00000 00011223322233
Q ss_pred hhhhhHHHHHhhCC-CccEEEeCCCC-cCcHHHHHHccCCC---CCcccc--cCHHHHHH
Q psy11600 198 DMMPKVKWLRENYP-TLNIEVDGGVG-PNTIDECAKCLTGF---GGQKFM--QDMMPKVK 250 (277)
Q Consensus 198 ~~l~kI~~l~~~~~-~~~i~vdGgV~-~~tv~~~~~~gpg~---ggq~F~--~~~~~kI~ 250 (277)
..++.++++++..+ ++.+...|||+ .+.+.+++.+|++. |...+. |....|++
T Consensus 228 ~~~~~v~~i~~~~~~~ipiia~GGI~~~~da~~~l~~GAd~V~vg~a~~~~GP~~~~~i~ 287 (289)
T cd02810 228 LALRWVARLAARLQLDIPIIGVGGIDSGEDVLEMLMAGASAVQVATALMWDGPDVIRKIK 287 (289)
T ss_pred HHHHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHcCccHheEcHHHHhcCccHHHHHh
Confidence 44666777777665 78899999997 57788888888885 444442 55555554
No 73
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=96.89 E-value=0.036 Score=50.92 Aligned_cols=168 Identities=15% Similarity=0.147 Sum_probs=99.1
Q ss_pred HHHHHHHhc--CCCCeeeeeeeccCcHHh---HHHHHhcCCCeEEEeccCCC---------C----CHHHHHHHHhhCCC
Q psy11600 53 PVVKCLRNK--IPKAFFETHMMVQNPQQW---IEPMADANVDQYTFHVEPVD---------N----VPQVIRQIKEAGMK 114 (277)
Q Consensus 53 ~~v~~l~~~--~~~~~~d~Hlmv~~p~~~---i~~l~~ag~d~i~~H~e~~d---------~----g~~~i~~i~~~~~~ 114 (277)
.+++.+++. ..+.|+-+-++-.+++++ ++.+.++|+|.+.+|+-.-. . -.++++++|+.+..
T Consensus 76 ~~~~~~~~~~~~~~~p~ivsi~g~~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~~~~ 155 (296)
T cd04740 76 AFLEELLPWLREFGTPVIASIAGSTVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKATDV 155 (296)
T ss_pred HHHHHHHHHhhcCCCcEEEEEecCCHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhccCC
Confidence 445555432 146899999998888776 55566789999999865321 1 33578888888766
Q ss_pred cccc--------hhhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCCccceeeCCCCCHHhHHHHHhhcCceEEEEe
Q psy11600 115 VGQV--------LQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIMTV 186 (277)
Q Consensus 115 ~~d~--------p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~i~p~t~~~~i~~~i~~~d~vl~mav 186 (277)
|+-+ ..+.++.+.++|+|.++++-- +. |..+...+.- +. +..
T Consensus 156 Pv~vKl~~~~~~~~~~a~~~~~~G~d~i~~~nt----~~-------------g~~~~~~~~~----~~---------~~~ 205 (296)
T cd04740 156 PVIVKLTPNVTDIVEIARAAEEAGADGLTLINT----LK-------------GMAIDIETRK----PI---------LGN 205 (296)
T ss_pred CEEEEeCCCchhHHHHHHHHHHcCCCEEEEECC----Cc-------------ccccccccCc----ee---------ecC
Confidence 6544 234567788899998887521 10 0000000000 00 000
Q ss_pred -cCCCCCchhhhhhhhhHHHHHhhCCCccEEEeCCC-CcCcHHHHHHccCCC---CCccc-ccCHHHHHHH
Q psy11600 187 -EPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGV-GPNTIDECAKCLTGF---GGQKF-MQDMMPKVKW 251 (277)
Q Consensus 187 -~Pgt~gq~~~~~~l~kI~~l~~~~~~~~i~vdGgV-~~~tv~~~~~~gpg~---ggq~F-~~~~~~kI~~ 251 (277)
.-+.+|....+..++.++++++.. ++.+...||| +.+.+.+++++|++. |...+ .|....|+++
T Consensus 206 ~~gg~sg~~~~~~~~~~i~~i~~~~-~ipii~~GGI~~~~da~~~l~~GAd~V~igra~l~~p~~~~~i~~ 275 (296)
T cd04740 206 VTGGLSGPAIKPIALRMVYQVYKAV-EIPIIGVGGIASGEDALEFLMAGASAVQVGTANFVDPEAFKEIIE 275 (296)
T ss_pred CcceecCcccchHHHHHHHHHHHhc-CCCEEEECCCCCHHHHHHHHHcCCCEEEEchhhhcChHHHHHHHH
Confidence 012233222333455566666543 5788899999 568888999999985 44433 3667777664
No 74
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=96.85 E-value=0.012 Score=51.71 Aligned_cols=129 Identities=17% Similarity=0.179 Sum_probs=87.2
Q ss_pred CceEeeeccccCcccHHHHHHHHHHcCCCEEEEecc-------------ccccccCCCCCHHHHHHHHhcCCCCeeeeee
Q psy11600 5 QCMIGPSILNSDLSNLHSESQNLLDSGADYLHLDVM-------------DGTFVPNLTFGHPVVKCLRNKIPKAFFETHM 71 (277)
Q Consensus 5 ~~~~~~s~~~~d~~~l~~~~~~l~~~~~~~~h~Dim-------------Dg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hl 71 (277)
...+.+||...|...+.+..+++.+.|.|. +||- -|.+..+..|-.++++.+|+.. ..++.+-+
T Consensus 54 ~~p~~~qi~g~~~~~~~~aa~~~~~aG~d~--ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~~-~~~v~vk~ 130 (231)
T cd02801 54 ERPLIVQLGGSDPETLAEAAKIVEELGADG--IDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREAV-PIPVTVKI 130 (231)
T ss_pred CCCEEEEEcCCCHHHHHHHHHHHHhcCCCE--EEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHhc-CCCEEEEE
Confidence 345788999999999999999999999999 5542 1233345556678899999864 46666655
Q ss_pred ecc-----CcHHhHHHHHhcCCCeEEEeccCCC------CCHHHHHHHHhhCCCcccc------hhhhhHHHHhcCCCeE
Q psy11600 72 MVQ-----NPQQWIEPMADANVDQYTFHVEPVD------NVPQVIRQIKEAGMKVGQV------LQDWIEPMADANVDQY 134 (277)
Q Consensus 72 mv~-----~p~~~i~~l~~ag~d~i~~H~e~~d------~g~~~i~~i~~~~~~~~d~------p~~~i~~~~~~g~d~i 134 (277)
-.. +..+.++.+.++|++++++|.-... ...+.++.+++....|+-. +++..+.+...|+|.+
T Consensus 131 r~~~~~~~~~~~~~~~l~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~i~~~~~ipvi~~Ggi~~~~d~~~~l~~~gad~V 210 (231)
T cd02801 131 RLGWDDEEETLELAKALEDAGASALTVHGRTREQRYSGPADWDYIAEIKEAVSIPVIANGDIFSLEDALRCLEQTGVDGV 210 (231)
T ss_pred eeccCCchHHHHHHHHHHHhCCCEEEECCCCHHHcCCCCCCHHHHHHHHhCCCCeEEEeCCCCCHHHHHHHHHhcCCCEE
Confidence 332 3445678889999999998864211 1456667777766555432 5555554444477776
Q ss_pred Ee
Q psy11600 135 TF 136 (277)
Q Consensus 135 t~ 136 (277)
.+
T Consensus 211 ~i 212 (231)
T cd02801 211 MI 212 (231)
T ss_pred EE
Confidence 66
No 75
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=96.82 E-value=0.014 Score=54.39 Aligned_cols=129 Identities=16% Similarity=0.111 Sum_probs=91.7
Q ss_pred eEeeeccccCcccHHHHHHHHHHcCCCEEEEecccc------------cc-ccCCCCCHHHHHHHHhcCCCCeeeeeeec
Q psy11600 7 MIGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDG------------TF-VPNLTFGHPVVKCLRNKIPKAFFETHMMV 73 (277)
Q Consensus 7 ~~~~s~~~~d~~~l~~~~~~l~~~~~~~~h~DimDg------------~f-vp~~~~g~~~v~~l~~~~~~~~~d~Hlmv 73 (277)
-+.++|...|...+.+..+.+++.|+|. +|+-=| .+ ..+..+-.++++++|+. .++|+.+-+=.
T Consensus 64 p~i~ql~g~~~~~~~~aa~~~~~~G~d~--IelN~gcP~~~~~~~~~Gs~l~~~~~~~~ei~~~vr~~-~~~pv~vKir~ 140 (319)
T TIGR00737 64 PISVQLFGSDPDTMAEAAKINEELGADI--IDINMGCPVPKITKKGAGSALLRDPDLIGKIVKAVVDA-VDIPVTVKIRI 140 (319)
T ss_pred eEEEEEeCCCHHHHHHHHHHHHhCCCCE--EEEECCCCHHHhcCCCccchHhCCHHHHHHHHHHHHhh-cCCCEEEEEEc
Confidence 4789999999999999999999999998 666322 11 11222334678888876 67888887632
Q ss_pred c------CcHHhHHHHHhcCCCeEEEeccCCCC------CHHHHHHHHhhCCCcccc------hhhhhHHHHhcCCCeEE
Q psy11600 74 Q------NPQQWIEPMADANVDQYTFHVEPVDN------VPQVIRQIKEAGMKVGQV------LQDWIEPMADANVDQYT 135 (277)
Q Consensus 74 ~------~p~~~i~~l~~ag~d~i~~H~e~~d~------g~~~i~~i~~~~~~~~d~------p~~~i~~~~~~g~d~it 135 (277)
. +..+.++.+.++|+|++++|...... -.+.++.+++....|+-. +++..+.+...|||.+.
T Consensus 141 g~~~~~~~~~~~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~~~~da~~~l~~~gad~Vm 220 (319)
T TIGR00737 141 GWDDAHINAVEAARIAEDAGAQAVTLHGRTRAQGYSGEANWDIIARVKQAVRIPVIGNGDIFSPEDAKAMLETTGCDGVM 220 (319)
T ss_pred ccCCCcchHHHHHHHHHHhCCCEEEEEcccccccCCCchhHHHHHHHHHcCCCcEEEeCCCCCHHHHHHHHHhhCCCEEE
Confidence 1 24566788899999999999654221 345677777776655432 78877888788999988
Q ss_pred eec
Q psy11600 136 FHV 138 (277)
Q Consensus 136 ~H~ 138 (277)
+=-
T Consensus 221 igR 223 (319)
T TIGR00737 221 IGR 223 (319)
T ss_pred ECh
Confidence 853
No 76
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=96.81 E-value=0.018 Score=52.54 Aligned_cols=107 Identities=19% Similarity=0.264 Sum_probs=72.8
Q ss_pred HHHHHHHHHhCCccceeeCCCCCHHhHHH---HHhhcCceEEEEecCCCCCchhhhhhhhhHHHHHhhCCCccEEEeCCC
Q psy11600 145 PQVIRQIKEAGMKVGLAIKPKTPVDVIAE---YIESADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGV 221 (277)
Q Consensus 145 ~~~~~~I~~~g~~~g~~i~p~t~~~~i~~---~i~~~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~~~~~i~vdGgV 221 (277)
++.++..++.| ..--+-|..|+++..+ .++..++-++..+.|.|+. ++++.+.+....+-..|
T Consensus 109 e~F~~~~~~aG--vdgviipDLP~ee~~~~~~~~~~~gi~~I~lv~PtT~~--------eri~~i~~~a~gFIY~v---- 174 (263)
T CHL00200 109 NKFIKKISQAG--VKGLIIPDLPYEESDYLISVCNLYNIELILLIAPTSSK--------SRIQKIARAAPGCIYLV---- 174 (263)
T ss_pred HHHHHHHHHcC--CeEEEecCCCHHHHHHHHHHHHHcCCCEEEEECCCCCH--------HHHHHHHHhCCCcEEEE----
Confidence 34555566666 3344568889876654 4577899999999999973 45666665555554432
Q ss_pred CcCcHHHHHHccCCCCCcc--cccCHHHHHHHHHhhCCCCeEEEeCCCC-ccCHHHhh
Q psy11600 222 GPNTIDECAKCLTGFGGQK--FMQDMMPKVKWLRENYPTLNIEVDGGVG-PNTIDECA 276 (277)
Q Consensus 222 ~~~tv~~~~~~gpg~ggq~--F~~~~~~kI~~l~~~~~~~~I~VDGGI~-~~~~~~~~ 276 (277)
+ .+|++|+. +.++..+.++++|+. .+.-|.|++||+ +++++++.
T Consensus 175 ---S-------~~GvTG~~~~~~~~~~~~i~~ir~~-t~~Pi~vGFGI~~~e~~~~~~ 221 (263)
T CHL00200 175 ---S-------TTGVTGLKTELDKKLKKLIETIKKM-TNKPIILGFGISTSEQIKQIK 221 (263)
T ss_pred ---c-------CCCCCCCCccccHHHHHHHHHHHHh-cCCCEEEECCcCCHHHHHHHH
Confidence 2 27887763 334566667777764 356799999999 78888765
No 77
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=96.81 E-value=0.072 Score=47.71 Aligned_cols=182 Identities=10% Similarity=0.090 Sum_probs=103.0
Q ss_pred EEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHh-cCCCeEEE-eccCCC-C---CHHHHHHHH
Q psy11600 36 HLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMAD-ANVDQYTF-HVEPVD-N---VPQVIRQIK 109 (277)
Q Consensus 36 h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~-ag~d~i~~-H~e~~d-~---g~~~i~~i~ 109 (277)
-+|+++|.-|.- .=|- +.. . ..+..+|.+..+.+.+ .|++++|+ .++... + ...+|+++.
T Consensus 7 aIDl~~G~~Vr~-~~G~------~~~--~-----~~~~~dp~~~a~~~~~~~Ga~~l~ivDLd~a~~~~~~n~~~I~~i~ 72 (234)
T PRK13587 7 AIDLIGSTSVRL-TEGK------YDS--E-----EKMSRSAEESIAYYSQFECVNRIHIVDLIGAKAQHAREFDYIKSLR 72 (234)
T ss_pred EEEccCCEEEEc-Cccc------CCC--c-----eEeCCCHHHHHHHHHhccCCCEEEEEECcccccCCcchHHHHHHHH
Confidence 389999987721 1121 211 1 2234799999999998 69999932 133332 2 467899998
Q ss_pred hhCCCcccc-----hhhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCCccceeeCC--C------------CCHHh
Q psy11600 110 EAGMKVGQV-----LQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKP--K------------TPVDV 170 (277)
Q Consensus 110 ~~~~~~~d~-----p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~i~p--~------------t~~~~ 170 (277)
+.+..|+.+ -.+-++.+.++||+.+.+-.++.+++.-+.+..++.|-+.-+++.. | .++..
T Consensus 73 ~~~~~pi~vGGGIrs~e~v~~~l~~Ga~kvvigt~a~~~~~~l~~~~~~fg~~ivvslD~~~g~v~~~gw~~~~~~~~~~ 152 (234)
T PRK13587 73 RLTTKDIEVGGGIRTKSQIMDYFAAGINYCIVGTKGIQDTDWLKEMAHTFPGRIYLSVDAYGEDIKVNGWEEDTELNLFS 152 (234)
T ss_pred hhcCCeEEEcCCcCCHHHHHHHHHCCCCEEEECchHhcCHHHHHHHHHHcCCCEEEEEEeeCCEEEecCCcccCCCCHHH
Confidence 877777766 4556788888999999998874444443444445554332233221 1 22222
Q ss_pred HHHHHhh--cCceEEEEecCCCCCchhhhhhhhhHHHHHhhCCCccEEEeCCCCc-CcHHHHHHccCC
Q psy11600 171 IAEYIES--ADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGP-NTIDECAKCLTG 235 (277)
Q Consensus 171 i~~~i~~--~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~~~~~i~vdGgV~~-~tv~~~~~~gpg 235 (277)
+.+.+.. +.-++.+.++.....+.+..++++++. +. .++.+.+-||+.- +-+..+.+.|+.
T Consensus 153 ~~~~~~~~g~~~ii~tdi~~dGt~~G~~~~li~~l~---~~-~~ipvi~~GGi~s~edi~~l~~~G~~ 216 (234)
T PRK13587 153 FVRQLSDIPLGGIIYTDIAKDGKMSGPNFELTGQLV---KA-TTIPVIASGGIRHQQDIQRLASLNVH 216 (234)
T ss_pred HHHHHHHcCCCEEEEecccCcCCCCccCHHHHHHHH---Hh-CCCCEEEeCCCCCHHHHHHHHHcCCC
Confidence 3333333 356667777664333333433443333 22 3456777787763 244444555444
No 78
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=96.79 E-value=0.033 Score=49.09 Aligned_cols=147 Identities=21% Similarity=0.280 Sum_probs=89.7
Q ss_pred hHHHHHhcCCCeEEEeccCCCC---CHHHHHHHHhhCC---Cccc-----chhhhhHHHHhcCCCeEEeecCCCCChHHH
Q psy11600 79 WIEPMADANVDQYTFHVEPVDN---VPQVIRQIKEAGM---KVGQ-----VLQDWIEPMADANVDQYTFHVEPVDNVPQV 147 (277)
Q Consensus 79 ~i~~l~~ag~d~i~~H~e~~d~---g~~~i~~i~~~~~---~~~d-----~p~~~i~~~~~~g~d~it~H~E~~~~~~~~ 147 (277)
.++.+.++|+|++-|-++...- .++..+.|.+... .++- .|+...+.+.+++.|.|=+|-. .....
T Consensus 15 da~~~~~~Gad~iGfI~~~~S~R~V~~~~a~~i~~~~~~~i~~VgVf~~~~~~~i~~~~~~~~~d~vQLHg~---e~~~~ 91 (210)
T PRK01222 15 DAEAAAELGADAIGFVFYPKSPRYVSPEQAAELAAALPPFVKVVGVFVNASDEEIDEIVETVPLDLLQLHGD---ETPEF 91 (210)
T ss_pred HHHHHHHcCCCEEEEccCCCCCCcCCHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHhcCCCEEEECCC---CCHHH
Confidence 5778899999999987654221 5667777776532 1221 1777888889999999999954 33444
Q ss_pred HHHHHH-hCCc--cceeeCCCCCHHhHHHHHhhcCceEEEEecC--CCCCchhhhhhhhhHHHHHhhCCCccEEEeCCCC
Q psy11600 148 IRQIKE-AGMK--VGLAIKPKTPVDVIAEYIESADLVLIMTVEP--GFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVG 222 (277)
Q Consensus 148 ~~~I~~-~g~~--~g~~i~p~t~~~~i~~~i~~~d~vl~mav~P--gt~gq~~~~~~l~kI~~l~~~~~~~~i~vdGgV~ 222 (277)
++.++. .+.+ +-+.+.....+....++...+|.+++=+-.| |..|..|.-..+. +.+ ...+.+.||++
T Consensus 92 ~~~l~~~~~~~iik~i~v~~~~~l~~~~~~~~~~d~~L~Ds~~~~~GGtG~~~dw~~l~-----~~~--~~p~~LAGGi~ 164 (210)
T PRK01222 92 CRQLKRRYGLPVIKALRVRSAGDLEAAAAYYGDADGLLLDAYVGLPGGTGKTFDWSLLP-----AGL--AKPWILAGGLN 164 (210)
T ss_pred HHHHHhhcCCcEEEEEecCCHHHHHHHHhhhccCCEEEEcCCCCCCCCCCCccchHHhh-----hcc--CCCEEEECCCC
Confidence 555554 2222 2233322223444444555678877665554 4445555433331 111 34688999999
Q ss_pred cCcHHHHHH-ccCC
Q psy11600 223 PNTIDECAK-CLTG 235 (277)
Q Consensus 223 ~~tv~~~~~-~gpg 235 (277)
.+|+.++.+ .+|.
T Consensus 165 peNv~~ai~~~~p~ 178 (210)
T PRK01222 165 PDNVAEAIRQVRPY 178 (210)
T ss_pred HHHHHHHHHhcCCC
Confidence 999998876 3663
No 79
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=96.75 E-value=0.06 Score=48.52 Aligned_cols=166 Identities=11% Similarity=0.191 Sum_probs=98.3
Q ss_pred EeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEE-eccC-CCC---CHHHHHHHHhh
Q psy11600 37 LDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTF-HVEP-VDN---VPQVIRQIKEA 111 (277)
Q Consensus 37 ~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~-H~e~-~d~---g~~~i~~i~~~ 111 (277)
+|++||.-|- +.+ ...........||.+.++.+.+.|++++|+ .+|. ..+ ...+|+++.+.
T Consensus 7 IDl~~Gk~Vr-----------l~~---G~~~~~~~~~~dP~~~A~~~~~~ga~~lhivDLd~a~~g~~~n~~~i~~i~~~ 72 (241)
T PRK14114 7 IDLFRGKVAR-----------MVK---GKKENTIFYEKDPAELVEKLIEEGFTLIHVVDLSKAIENSVENLPVLEKLSEF 72 (241)
T ss_pred EEEECCEEEE-----------eec---cccCcceEECCCHHHHHHHHHHCCCCEEEEEECCCcccCCcchHHHHHHHHhh
Confidence 7899988761 111 111222346789999999999999999932 1332 223 45778888887
Q ss_pred CCCcccc-----hhhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCCccceeeC--------------CCCCHHhHH
Q psy11600 112 GMKVGQV-----LQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIK--------------PKTPVDVIA 172 (277)
Q Consensus 112 ~~~~~d~-----p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~i~--------------p~t~~~~i~ 172 (277)
+ .|+.+ -.+-++.+.++||+.+.+-.++.+++. .++.+.+.|-+.-+++- .+.++..+.
T Consensus 73 ~-~~v~vGGGIrs~e~~~~~l~~Ga~rvvigT~a~~~p~-~l~~~~~~~~~ivvslD~k~g~v~~~gw~~~~~~~~~e~~ 150 (241)
T PRK14114 73 A-EHIQIGGGIRSLDYAEKLRKLGYRRQIVSSKVLEDPS-FLKFLKEIDVEPVFSLDTRGGKVAFKGWLAEEEIDPVSLL 150 (241)
T ss_pred c-CcEEEecCCCCHHHHHHHHHCCCCEEEECchhhCCHH-HHHHHHHhCCCEEEEEEccCCEEeeCCCeecCCCCHHHHH
Confidence 6 46655 356677888899999999887444433 34444544433222222 122233333
Q ss_pred HHHhhc--CceEEEEecCCCCCchhhhhhhhhHHHHHhhCCCccEEEeCCCC
Q psy11600 173 EYIESA--DLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVG 222 (277)
Q Consensus 173 ~~i~~~--d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~~~~~i~vdGgV~ 222 (277)
+.+... .-++++.+.-.-..+-+.-++++++ ++. .++.+..-|||.
T Consensus 151 ~~~~~~g~~~ii~tdI~rdGt~~G~d~el~~~l---~~~-~~~pviasGGv~ 198 (241)
T PRK14114 151 KRLKEYGLEEIVHTEIEKDGTLQEHDFSLTRKI---AIE-AEVKVFAAGGIS 198 (241)
T ss_pred HHHHhcCCCEEEEEeechhhcCCCcCHHHHHHH---HHH-CCCCEEEECCCC
Confidence 344443 5677777776443344444444443 333 367788889986
No 80
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=96.68 E-value=0.026 Score=52.75 Aligned_cols=131 Identities=14% Similarity=0.098 Sum_probs=95.4
Q ss_pred eEeeeccccCcccHHHHHHHHHHcCCCEEEEecccccccc---CCCCC----------HHHHHHHHhcCC-CCeeeeeee
Q psy11600 7 MIGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVP---NLTFG----------HPVVKCLRNKIP-KAFFETHMM 72 (277)
Q Consensus 7 ~~~~s~~~~d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp---~~~~g----------~~~v~~l~~~~~-~~~~d~Hlm 72 (277)
-+.++|+..|...+.+..+.+++.|.|. +||-=|.-+| .-..| -++++++|+..+ ++|+.+-+=
T Consensus 64 p~~vQl~g~~p~~~~~aA~~~~~~g~d~--IdiN~GCP~~~v~~~g~Gs~Ll~~~~~~~eiv~avr~~~~~~~pVsvKiR 141 (312)
T PRK10550 64 LVRIQLLGQYPQWLAENAARAVELGSWG--VDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREAVPAHLPVTVKVR 141 (312)
T ss_pred cEEEEeccCCHHHHHHHHHHHHHcCCCE--EEEeCCCCchHHhcCCCchHhhcCHHHHHHHHHHHHHhcCCCcceEEEEE
Confidence 4789999999999999999999999887 7776554322 12222 456777787754 588888765
Q ss_pred cc--C---cHHhHHHHHhcCCCeEEEeccCCCC---C----HHHHHHHHhhCCCcc----cc--hhhhhHHHHhcCCCeE
Q psy11600 73 VQ--N---PQQWIEPMADANVDQYTFHVEPVDN---V----PQVIRQIKEAGMKVG----QV--LQDWIEPMADANVDQY 134 (277)
Q Consensus 73 v~--~---p~~~i~~l~~ag~d~i~~H~e~~d~---g----~~~i~~i~~~~~~~~----d~--p~~~i~~~~~~g~d~i 134 (277)
.. + ..+.++.+.++|++.+|+|.-.... | .+.++.+++....|+ ++ |++..+.+...|||.|
T Consensus 142 ~g~~~~~~~~~~a~~l~~~Gvd~i~Vh~Rt~~~~y~g~~~~~~~i~~ik~~~~iPVi~nGdI~t~~da~~~l~~~g~DgV 221 (312)
T PRK10550 142 LGWDSGERKFEIADAVQQAGATELVVHGRTKEDGYRAEHINWQAIGEIRQRLTIPVIANGEIWDWQSAQQCMAITGCDAV 221 (312)
T ss_pred CCCCCchHHHHHHHHHHhcCCCEEEECCCCCccCCCCCcccHHHHHHHHhhcCCcEEEeCCcCCHHHHHHHHhccCCCEE
Confidence 43 2 2345677889999999999765321 2 457899998876655 33 8888888888999999
Q ss_pred EeecC
Q psy11600 135 TFHVE 139 (277)
Q Consensus 135 t~H~E 139 (277)
.+--.
T Consensus 222 miGRg 226 (312)
T PRK10550 222 MIGRG 226 (312)
T ss_pred EEcHH
Confidence 98544
No 81
>TIGR01740 pyrF orotidine 5'-phosphate decarboxylase, subfamily 1. This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. In many eukaryotes, the region hit by this model is part of a multifunctional protein.
Probab=96.66 E-value=0.0071 Score=53.26 Aligned_cols=67 Identities=9% Similarity=0.163 Sum_probs=54.0
Q ss_pred ccCcHHhHHHHHhcC--CCeEEEeccCC-CCCHHHHHHHHhhCCCc------ccc---hhhhhHHHHhcCCCeEEeecC
Q psy11600 73 VQNPQQWIEPMADAN--VDQYTFHVEPV-DNVPQVIRQIKEAGMKV------GQV---LQDWIEPMADANVDQYTFHVE 139 (277)
Q Consensus 73 v~~p~~~i~~l~~ag--~d~i~~H~e~~-d~g~~~i~~i~~~~~~~------~d~---p~~~i~~~~~~g~d~it~H~E 139 (277)
+.++++.++.+.+.+ ++++=+|.+.+ .+|+.+++.+|+.+..+ +|+ +..+++.+.++|||++|+|.+
T Consensus 7 ~~~~~~a~~~~~~~~~~v~~iKig~~l~~~~G~~~v~~l~~~~~~v~lD~K~~Dig~t~~~~~~~~~~~gad~vTvh~~ 85 (213)
T TIGR01740 7 VTTKDEALDLADSLGPEIEVIKVGIDLLLDGGDKIIDELAKLNKLIFLDLKFADIPNTVKLQYESKIKQGADMVNVHGV 85 (213)
T ss_pred CCCHHHHHHHHHhcCCcCcEEEECHHHHHhcCHHHHHHHHHcCCCEEEEEeecchHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 346677788787777 78877898875 56999999999987654 455 467888899999999999998
No 82
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=96.62 E-value=0.013 Score=52.18 Aligned_cols=180 Identities=16% Similarity=0.221 Sum_probs=109.5
Q ss_pred EeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEEe-ccC-CCC---CHHHHHHHHhh
Q psy11600 37 LDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTFH-VEP-VDN---VPQVIRQIKEA 111 (277)
Q Consensus 37 ~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~H-~e~-~d~---g~~~i~~i~~~ 111 (277)
+|+++|..|- +++ ...........+|.+.++.+.+.|++++|+- +|. ..+ ...+|+.+.+.
T Consensus 6 iDl~~G~~Vr-----------~~~---G~~~~~~~~~~dP~~~a~~~~~~g~~~l~ivDLdaa~~g~~~n~~~i~~i~~~ 71 (229)
T PF00977_consen 6 IDLKNGRVVR-----------LVK---GDRFSETVYSGDPVEVAKAFNEQGADELHIVDLDAAKEGRGSNLELIKEIAKE 71 (229)
T ss_dssp EEEETTEEEE-----------EST---TCCSCEECECCCHHHHHHHHHHTT-SEEEEEEHHHHCCTHHHHHHHHHHHHHH
T ss_pred EEEECCEEEE-----------CCC---eecceeeEECcCHHHHHHHHHHcCCCEEEEEEccCcccCchhHHHHHHHHHhc
Confidence 7999998871 121 1224556778899999999999999999432 232 234 44677888888
Q ss_pred CCCcccc-----hhhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCC---------ccc--eeeCCCC-----CHHh
Q psy11600 112 GMKVGQV-----LQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGM---------KVG--LAIKPKT-----PVDV 170 (277)
Q Consensus 112 ~~~~~d~-----p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~---------~~g--~~i~p~t-----~~~~ 170 (277)
+..++.+ -.+-++.+.++||+.+.+..++.+++.-+.+..+..|. +.| +..+... ++..
T Consensus 72 ~~~~i~vgGGIrs~ed~~~ll~~Ga~~Vvigt~~~~~~~~l~~~~~~~g~~~ivvslD~~~g~~v~~~gw~~~~~~~~~~ 151 (229)
T PF00977_consen 72 TGIPIQVGGGIRSIEDAERLLDAGADRVVIGTEALEDPELLEELAERYGSQRIVVSLDARDGYKVATNGWQESSGIDLEE 151 (229)
T ss_dssp SSSEEEEESSE-SHHHHHHHHHTT-SEEEESHHHHHCCHHHHHHHHHHGGGGEEEEEEEEETEEEEETTTTEEEEEEHHH
T ss_pred CCccEEEeCccCcHHHHHHHHHhCCCEEEeChHHhhchhHHHHHHHHcCcccEEEEEEeeeceEEEecCccccCCcCHHH
Confidence 7777776 46677888999999999988732233334455555443 233 2232222 2334
Q ss_pred HHHHHhh--cCceEEEEecCCCCCchhhhhhhhhHHHHHhhCCCccEEEeCCC-CcCcHHHHHHccC
Q psy11600 171 IAEYIES--ADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGV-GPNTIDECAKCLT 234 (277)
Q Consensus 171 i~~~i~~--~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~~~~~i~vdGgV-~~~tv~~~~~~gp 234 (277)
+.+.+.. +.-++++.+.-....+.+..++++++. +.. +..+..-||| +.+-+..+.+.|.
T Consensus 152 ~~~~~~~~g~~~ii~tdi~~dGt~~G~d~~~~~~l~---~~~-~~~viasGGv~~~~Dl~~l~~~G~ 214 (229)
T PF00977_consen 152 FAKRLEELGAGEIILTDIDRDGTMQGPDLELLKQLA---EAV-NIPVIASGGVRSLEDLRELKKAGI 214 (229)
T ss_dssp HHHHHHHTT-SEEEEEETTTTTTSSS--HHHHHHHH---HHH-SSEEEEESS--SHHHHHHHHHTTE
T ss_pred HHHHHHhcCCcEEEEeeccccCCcCCCCHHHHHHHH---HHc-CCCEEEecCCCCHHHHHHHHHCCC
Confidence 4444444 466788888876555555555554443 333 6788899999 5566666665554
No 83
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=96.62 E-value=0.029 Score=49.18 Aligned_cols=114 Identities=12% Similarity=0.048 Sum_probs=79.8
Q ss_pred cccHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEEecc
Q psy11600 17 LSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTFHVE 96 (277)
Q Consensus 17 ~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~H~e 96 (277)
..++.+..+..++.|++++|+=--|+.|-. +.+.++.+|+. .++|+.+.=.+.++ .+++.+.++|+|.+ |+.
T Consensus 30 ~~~~~~~A~~~~~~GA~~l~v~~~~~~~~g----~~~~~~~i~~~-v~iPi~~~~~i~~~-~~v~~~~~~Gad~v--~l~ 101 (217)
T cd00331 30 DFDPVEIAKAYEKAGAAAISVLTEPKYFQG----SLEDLRAVREA-VSLPVLRKDFIIDP-YQIYEARAAGADAV--LLI 101 (217)
T ss_pred CCCHHHHHHHHHHcCCCEEEEEeCccccCC----CHHHHHHHHHh-cCCCEEECCeecCH-HHHHHHHHcCCCEE--EEe
Confidence 345777788888999999999888876642 44788899985 78898876666666 47999999999999 655
Q ss_pred CCCCCHHHHHHHHhh----CCCc-ccc-hhhhhHHHHhcCCCeEEeec
Q psy11600 97 PVDNVPQVIRQIKEA----GMKV-GQV-LQDWIEPMADANVDQYTFHV 138 (277)
Q Consensus 97 ~~d~g~~~i~~i~~~----~~~~-~d~-p~~~i~~~~~~g~d~it~H~ 138 (277)
..+..+..++.+.+. .... .++ ..+-++...+.|++++.++.
T Consensus 102 ~~~~~~~~~~~~~~~~~~~g~~~~v~v~~~~e~~~~~~~g~~~i~~t~ 149 (217)
T cd00331 102 VAALDDEQLKELYELARELGMEVLVEVHDEEELERALALGAKIIGINN 149 (217)
T ss_pred eccCCHHHHHHHHHHHHHcCCeEEEEECCHHHHHHHHHcCCCEEEEeC
Confidence 544444444444332 2221 122 34447778888999998873
No 84
>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase. This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.
Probab=96.60 E-value=0.11 Score=46.77 Aligned_cols=165 Identities=10% Similarity=0.064 Sum_probs=100.2
Q ss_pred EeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEEeccCCCC------CHHHHHHHHh
Q psy11600 37 LDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTFHVEPVDN------VPQVIRQIKE 110 (277)
Q Consensus 37 ~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~H~e~~d~------g~~~i~~i~~ 110 (277)
+|++||..|.-..+-. .+ .-...+|.+.++.+.+.|++++ |++-.|+ ...+|+++.+
T Consensus 9 IDl~~G~vVrl~~G~~----------~~-----~~~y~~p~~~a~~~~~~g~~~l--hivDLd~a~g~~~n~~~i~~i~~ 71 (243)
T TIGR01919 9 VDVNGGAAVRLQQGAG----------GS-----KTYYGSLESAAKWWEQGGAEWI--HLVDLDAAFGGGNNEMMLEEVVK 71 (243)
T ss_pred EEEECCEEEEeecCCC----------CC-----ceecCCHHHHHHHHHhCCCeEE--EEEECCCCCCCcchHHHHHHHHH
Confidence 8999999885322210 01 1123478888888999999999 7665443 4578888888
Q ss_pred hCCCcccc-----hhhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCCccceeeC-----------------CCCCH
Q psy11600 111 AGMKVGQV-----LQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIK-----------------PKTPV 168 (277)
Q Consensus 111 ~~~~~~d~-----p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~i~-----------------p~t~~ 168 (277)
.+..|+.+ -.+-++.+.++||+.+.+-.++.+++.-+.+..+..|-+.-+++- .+..+
T Consensus 72 ~~~~~v~vgGGIrs~e~~~~~l~~Ga~~vvigT~a~~~p~~~~~~~~~~g~~ivvslD~k~~g~~~~v~~~Gw~~~~~~~ 151 (243)
T TIGR01919 72 LLVVVEELSGGRRDDSSLRAALTGGRARVNGGTAALENPWWAAAVIRYGGDIVAVGLDVLEDGEWHTLGNRGWSDGGGDL 151 (243)
T ss_pred HCCCCEEEcCCCCCHHHHHHHHHcCCCEEEECchhhCCHHHHHHHHHHccccEEEEEEEecCCceEEEECCCeecCCCcH
Confidence 87777766 566778888899999999877444444444555554433222221 12222
Q ss_pred HhHHHHHhhc--CceEEEEecCCCCCchhhhhhhhhHHHHHhhCCCccEEEeCCCC
Q psy11600 169 DVIAEYIESA--DLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVG 222 (277)
Q Consensus 169 ~~i~~~i~~~--d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~~~~~i~vdGgV~ 222 (277)
..+.+.+... .-+++..++-.-..+-+.-++++++ ++. .+..+..-||+.
T Consensus 152 ~~~~~~~~~~g~~~ii~tdI~~dGt~~G~d~~l~~~l---~~~-~~~pviasGGv~ 203 (243)
T TIGR01919 152 EVLERLLDSGGCSRVVVTDSKKDGLSGGPNELLLEVV---AAR-TDAIVAASGGSS 203 (243)
T ss_pred HHHHHHHHhCCCCEEEEEecCCcccCCCcCHHHHHHH---Hhh-CCCCEEEECCcC
Confidence 3333334443 5677777776443344444444443 332 456788888886
No 85
>PRK07094 biotin synthase; Provisional
Probab=96.52 E-value=0.057 Score=50.20 Aligned_cols=89 Identities=10% Similarity=0.108 Sum_probs=54.2
Q ss_pred CcccHHHHHHHHHHcCCCEEEEeccccc-cccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEEe
Q psy11600 16 DLSNLHSESQNLLDSGADYLHLDVMDGT-FVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTFH 94 (277)
Q Consensus 16 d~~~l~~~~~~l~~~~~~~~h~DimDg~-fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~H 94 (277)
+...+-++++.+.+.|++.+++ ..|. +.-+...=.++++.+++. +++.+.+++.. ...+.++.+.++|++.+.+-
T Consensus 71 s~eei~~~~~~~~~~g~~~i~l--~gG~~~~~~~~~l~~l~~~i~~~-~~l~i~~~~g~-~~~e~l~~Lk~aG~~~v~~g 146 (323)
T PRK07094 71 SPEEILECAKKAYELGYRTIVL--QSGEDPYYTDEKIADIIKEIKKE-LDVAITLSLGE-RSYEEYKAWKEAGADRYLLR 146 (323)
T ss_pred CHHHHHHHHHHHHHCCCCEEEE--ecCCCCCCCHHHHHHHHHHHHcc-CCceEEEecCC-CCHHHHHHHHHcCCCEEEec
Confidence 4455667778888889999665 4443 211111123566677764 55544443322 23567899999999999665
Q ss_pred ccCCCCCHHHHHHHHh
Q psy11600 95 VEPVDNVPQVIRQIKE 110 (277)
Q Consensus 95 ~e~~d~g~~~i~~i~~ 110 (277)
+|+.+ +.+.+.+++
T Consensus 147 lEs~~--~~~~~~i~~ 160 (323)
T PRK07094 147 HETAD--KELYAKLHP 160 (323)
T ss_pred cccCC--HHHHHHhCC
Confidence 66544 666666654
No 86
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=96.51 E-value=0.22 Score=44.09 Aligned_cols=171 Identities=12% Similarity=0.067 Sum_probs=107.0
Q ss_pred HHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEEeccCCCCCHHHHHHHHhhCCC-c-ccc------hhhhhH
Q psy11600 53 PVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMK-V-GQV------LQDWIE 124 (277)
Q Consensus 53 ~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~H~e~~d~g~~~i~~i~~~~~~-~-~d~------p~~~i~ 124 (277)
++++.|++. +=+++.-.--..+....++.+.+.|...+-+=+. ..+..+.|+.+++.... | +-+ -.+-++
T Consensus 5 ~~~~~l~~~-~vi~vir~~~~~~a~~~~~al~~~Gi~~iEit~~-~~~a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~ 82 (213)
T PRK06552 5 EILTKLKAN-GVVAVVRGESKEEALKISLAVIKGGIKAIEVTYT-NPFASEVIKELVELYKDDPEVLIGAGTVLDAVTAR 82 (213)
T ss_pred HHHHHHHHC-CEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECC-CccHHHHHHHHHHHcCCCCCeEEeeeeCCCHHHHH
Confidence 355666653 4444444333333444578888899998755554 24467778888765421 2 111 456779
Q ss_pred HHHhcCCCeEEeecCCCCChHHHHHHHHHhCCccceeeCCCC-CHHhHHHHH-hhcCceEEEEecCCCCCchhhhhhhhh
Q psy11600 125 PMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKT-PVDVIAEYI-ESADLVLIMTVEPGFGGQKFMQDMMPK 202 (277)
Q Consensus 125 ~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~i~p~t-~~~~i~~~i-~~~d~vl~mav~Pgt~gq~~~~~~l~k 202 (277)
...++||+++-=.. ..+++++..++. ++-.-||+ +.+++.... ..+|++- +-|... += .+-
T Consensus 83 ~a~~aGA~FivsP~----~~~~v~~~~~~~----~i~~iPG~~T~~E~~~A~~~Gad~vk---lFPa~~---~G---~~~ 145 (213)
T PRK06552 83 LAILAGAQFIVSPS----FNRETAKICNLY----QIPYLPGCMTVTEIVTALEAGSEIVK---LFPGST---LG---PSF 145 (213)
T ss_pred HHHHcCCCEEECCC----CCHHHHHHHHHc----CCCEECCcCCHHHHHHHHHcCCCEEE---ECCccc---CC---HHH
Confidence 99999999765321 235677777764 56666774 334444443 3456554 344221 11 334
Q ss_pred HHHHHhhCCCccEEEeCCCCcCcHHHHHHccCCC---CCcccc
Q psy11600 203 VKWLRENYPTLNIEVDGGVGPNTIDECAKCLTGF---GGQKFM 242 (277)
Q Consensus 203 I~~l~~~~~~~~i~vdGgV~~~tv~~~~~~gpg~---ggq~F~ 242 (277)
++.++..++++.+..-|||+.+|+.++.++|++. ||..+.
T Consensus 146 ik~l~~~~p~ip~~atGGI~~~N~~~~l~aGa~~vavgs~l~~ 188 (213)
T PRK06552 146 IKAIKGPLPQVNVMVTGGVNLDNVKDWFAAGADAVGIGGELNK 188 (213)
T ss_pred HHHHhhhCCCCEEEEECCCCHHHHHHHHHCCCcEEEEchHHhC
Confidence 6666777888999999999999999999999775 555544
No 87
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=96.51 E-value=0.15 Score=45.01 Aligned_cols=182 Identities=16% Similarity=0.146 Sum_probs=104.0
Q ss_pred EEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEEe-ccCC-CC---CHHHHHHHHh
Q psy11600 36 HLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTFH-VEPV-DN---VPQVIRQIKE 110 (277)
Q Consensus 36 h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~H-~e~~-d~---g~~~i~~i~~ 110 (277)
-+|+++|..|.-. =|. +.. -+.+..+|.+.++.+.+.|++.+++. .+.. .+ ..++++.+++
T Consensus 4 ~id~~~g~~v~~~-~G~------~~~-------~~~~~~dp~~~a~~~~~~g~~~l~v~dl~~~~~g~~~~~~~i~~i~~ 69 (230)
T TIGR00007 4 AIDIKDGKCVRLY-QGD------YDK-------ETVYGDDPVEAAKKWEEEGAERIHVVDLDGAKEGGPVNLPVIKKIVR 69 (230)
T ss_pred EEEeeCCEEEEee-ccc------cCc-------ceEecCCHHHHHHHHHHcCCCEEEEEeCCccccCCCCcHHHHHHHHH
Confidence 4889998877321 011 111 12256799999999999999999653 1222 22 3478999999
Q ss_pred hCCCcccc-----hhhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCCc-cceeeC---------------CCCCHH
Q psy11600 111 AGMKVGQV-----LQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMK-VGLAIK---------------PKTPVD 169 (277)
Q Consensus 111 ~~~~~~d~-----p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~-~g~~i~---------------p~t~~~ 169 (277)
.+..|+.+ -.+-++.+.++||+.+.+-.++.+++..+.+..++.|.+ .-+.+. ...+++
T Consensus 70 ~~~~pi~~ggGI~~~ed~~~~~~~Ga~~vvlgs~~l~d~~~~~~~~~~~g~~~i~~sid~~~~~v~~~g~~~~~~~~~~~ 149 (230)
T TIGR00007 70 ETGVPVQVGGGIRSLEDVEKLLDLGVDRVIIGTAAVENPDLVKELLKEYGPERIVVSLDARGGEVAVKGWLEKSEVSLEE 149 (230)
T ss_pred hcCCCEEEeCCcCCHHHHHHHHHcCCCEEEEChHHhhCHHHHHHHHHHhCCCcEEEEEEEECCEEEEcCCcccCCCCHHH
Confidence 88777765 355667888899999988755333455566667776522 122111 112233
Q ss_pred hHHHHHhh-cCceEEEEecCCCCCchhhhhhhhhHHHHHhhCCCccEEEeCCCCc-CcHHHHHHccCC
Q psy11600 170 VIAEYIES-ADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGP-NTIDECAKCLTG 235 (277)
Q Consensus 170 ~i~~~i~~-~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~~~~~i~vdGgV~~-~tv~~~~~~gpg 235 (277)
.+..+.+. ++.+++..++.....+... ++.++++++. .++.+.+-||+.- +.+..+.+.|++
T Consensus 150 ~~~~~~~~g~~~ii~~~~~~~g~~~g~~---~~~i~~i~~~-~~ipvia~GGi~~~~di~~~~~~Gad 213 (230)
T TIGR00007 150 LAKRLEELGLEGIIYTDISRDGTLSGPN---FELTKELVKA-VNVPVIASGGVSSIDDLIALKKLGVY 213 (230)
T ss_pred HHHHHHhCCCCEEEEEeecCCCCcCCCC---HHHHHHHHHh-CCCCEEEeCCCCCHHHHHHHHHCCCC
Confidence 23333332 5666767676542222222 3344444443 3466777788763 234444444444
No 88
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=96.49 E-value=0.14 Score=45.97 Aligned_cols=174 Identities=11% Similarity=0.105 Sum_probs=103.0
Q ss_pred EEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEE-eccCCCC---CHHHHHHHHhh
Q psy11600 36 HLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTF-HVEPVDN---VPQVIRQIKEA 111 (277)
Q Consensus 36 h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~-H~e~~d~---g~~~i~~i~~~ 111 (277)
-+|+++|..|.-..+- +.. .....||.+.++.+.+.|++++|+ .++...+ ...+|+++.+.
T Consensus 9 ~idl~~G~~V~~~~g~-------~~~--------~~~~~dp~~~a~~~~~~g~~~l~ivDLd~~~g~~~n~~~i~~i~~~ 73 (241)
T PRK14024 9 AVDVVDGQAVRLVQGE-------AGS--------ETSYGSPLDAALAWQRDGAEWIHLVDLDAAFGRGSNRELLAEVVGK 73 (241)
T ss_pred EEEeECCEEEEeeccc-------ccC--------ceECCCHHHHHHHHHHCCCCEEEEEeccccCCCCccHHHHHHHHHH
Confidence 3899999888432221 111 112459999999999999999932 1232222 45789999888
Q ss_pred CCCcccc-----hhhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCCccceeeCC--C-----------CCHHhHHH
Q psy11600 112 GMKVGQV-----LQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKP--K-----------TPVDVIAE 173 (277)
Q Consensus 112 ~~~~~d~-----p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~i~p--~-----------t~~~~i~~ 173 (277)
...|+.+ -.+-++.+..+||+.+.+-.+.-++++-+.+.++..+.+..+++.. + ..+..+.+
T Consensus 74 ~~~pv~vgGGirs~edv~~~l~~Ga~kvviGs~~l~~p~l~~~i~~~~~~~i~vsld~~~~~v~~~Gw~~~~~~~~~~~~ 153 (241)
T PRK14024 74 LDVKVELSGGIRDDESLEAALATGCARVNIGTAALENPEWCARVIAEHGDRVAVGLDVRGHTLAARGWTRDGGDLWEVLE 153 (241)
T ss_pred cCCCEEEcCCCCCHHHHHHHHHCCCCEEEECchHhCCHHHHHHHHHHhhhhEEEEEEEeccEeccCCeeecCccHHHHHH
Confidence 8777766 4667888889999999988764444444555565554333222221 1 11122233
Q ss_pred HHhh--cCceEEEEecCCCCCchhhhhhhhhHHHHHhhCCCccEEEeCCCCcCcHHHHH
Q psy11600 174 YIES--ADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECA 230 (277)
Q Consensus 174 ~i~~--~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~~~~~i~vdGgV~~~tv~~~~ 230 (277)
.+.+ ++.++++.+......+.+. ++.++++++. ..+.+..-||+. |.+.+.
T Consensus 154 ~l~~~G~~~iiv~~~~~~g~~~G~d---~~~i~~i~~~-~~ipviasGGi~--s~~D~~ 206 (241)
T PRK14024 154 RLDSAGCSRYVVTDVTKDGTLTGPN---LELLREVCAR-TDAPVVASGGVS--SLDDLR 206 (241)
T ss_pred HHHhcCCCEEEEEeecCCCCccCCC---HHHHHHHHhh-CCCCEEEeCCCC--CHHHHH
Confidence 3333 4677888887743333332 3444455443 346777888885 444443
No 89
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=96.48 E-value=0.023 Score=50.24 Aligned_cols=154 Identities=21% Similarity=0.188 Sum_probs=82.3
Q ss_pred cCcHHhHHHHHhcC--CCeEEEeccCCC-----CCHHHHHHHHhhCCC-cc--cc-----hhhhhHHHHhcCCCeEEeec
Q psy11600 74 QNPQQWIEPMADAN--VDQYTFHVEPVD-----NVPQVIRQIKEAGMK-VG--QV-----LQDWIEPMADANVDQYTFHV 138 (277)
Q Consensus 74 ~~p~~~i~~l~~ag--~d~i~~H~e~~d-----~g~~~i~~i~~~~~~-~~--d~-----p~~~i~~~~~~g~d~it~H~ 138 (277)
.++++-++...+.+ +|++ |+.+ .|.+.|+.+|+.... ++ |+ =.-..+...++|||++|+=-
T Consensus 13 ~~l~~Ai~~a~~v~~~~dii----EvGTpLik~eG~~aV~~lr~~~pd~~IvAD~Kt~D~G~~e~~ma~~aGAd~~tV~g 88 (217)
T COG0269 13 LDLEEAIEIAEEVADYVDII----EVGTPLIKAEGMRAVRALRELFPDKIIVADLKTADAGAIEARMAFEAGADWVTVLG 88 (217)
T ss_pred cCHHHHHHHHHHhhhcceEE----EeCcHHHHHhhHHHHHHHHHHCCCCeEEeeeeecchhHHHHHHHHHcCCCEEEEEe
Confidence 45555555554442 4443 5543 388999999998633 22 33 45677888999999999853
Q ss_pred CCCC-ChHHHHHHHHHhCCccceeeCCCCCHHhHHHHHhhcCceEEEEecCCCCCchhhhhhhhhHHHHHhhCCCccEEE
Q psy11600 139 EPVD-NVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEV 217 (277)
Q Consensus 139 E~~~-~~~~~~~~I~~~g~~~g~~i~p~t~~~~i~~~i~~~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~~~~~i~v 217 (277)
=+.. +....++..++.| ..+. +| |.-+. + ..++.+++.+..++.-+.
T Consensus 89 ~A~~~TI~~~i~~A~~~~----~~v~--------------iD----l~~~~-~--------~~~~~~~l~~~gvd~~~~- 136 (217)
T COG0269 89 AADDATIKKAIKVAKEYG----KEVQ--------------ID----LIGVW-D--------PEQRAKWLKELGVDQVIL- 136 (217)
T ss_pred cCCHHHHHHHHHHHHHcC----CeEE--------------EE----eecCC-C--------HHHHHHHHHHhCCCEEEE-
Confidence 2100 2222333333322 1111 11 11111 1 134455555433332111
Q ss_pred eCCCCcCcHHHHHHccCCCCCcccccCHHHHHHHHHhhCCCCeEEEeCCCCccCHHHhh
Q psy11600 218 DGGVGPNTIDECAKCLTGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECA 276 (277)
Q Consensus 218 dGgV~~~tv~~~~~~gpg~ggq~F~~~~~~kI~~l~~~~~~~~I~VDGGI~~~~~~~~~ 276 (277)
==|+..++ .|..+-.+.+++++++.... ..+.|-|||++++++.+.
T Consensus 137 H~g~D~q~-----------~G~~~~~~~l~~ik~~~~~g--~~vAVaGGI~~~~i~~~~ 182 (217)
T COG0269 137 HRGRDAQA-----------AGKSWGEDDLEKIKKLSDLG--AKVAVAGGITPEDIPLFK 182 (217)
T ss_pred EecccHhh-----------cCCCccHHHHHHHHHhhccC--ceEEEecCCCHHHHHHHh
Confidence 00111111 35555456677787777553 789999999999998775
No 90
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=96.45 E-value=0.076 Score=46.88 Aligned_cols=147 Identities=23% Similarity=0.338 Sum_probs=98.4
Q ss_pred hHHHHHhcCCCeEEEeccCC-CC--CHHHHHHHHhhCC--Ccccc-----hhhhhHHHHhcCCCeEEeecCCCCChHHHH
Q psy11600 79 WIEPMADANVDQYTFHVEPV-DN--VPQVIRQIKEAGM--KVGQV-----LQDWIEPMADANVDQYTFHVEPVDNVPQVI 148 (277)
Q Consensus 79 ~i~~l~~ag~d~i~~H~e~~-d~--g~~~i~~i~~~~~--~~~d~-----p~~~i~~~~~~g~d~it~H~E~~~~~~~~~ 148 (277)
.+....++|+|++-|=++.. .- .+...+.+...-. ..+-+ ++++.+...+.+.|.|-+|-+ .....+
T Consensus 14 da~~a~~~gad~iG~If~~~SpR~Vs~~~a~~i~~~v~~~~~VgVf~n~~~~~i~~i~~~~~ld~VQlHG~---e~~~~~ 90 (208)
T COG0135 14 DAKAAAKAGADYIGFIFVPKSPRYVSPEQAREIASAVPKVKVVGVFVNESIEEILEIAEELGLDAVQLHGD---EDPEYI 90 (208)
T ss_pred HHHHHHHcCCCEEEEEEcCCCCCcCCHHHHHHHHHhCCCCCEEEEECCCCHHHHHHHHHhcCCCEEEECCC---CCHHHH
Confidence 45677889999987665542 11 4555555555432 21211 566777788889999999986 455666
Q ss_pred HHHHHh---CCccceeeCCCCCHHhHHHHHhhcCceEEEEec---CCCCCchhhhhhhhhHHHHHhhCCCccEEEeCCCC
Q psy11600 149 RQIKEA---GMKVGLAIKPKTPVDVIAEYIESADLVLIMTVE---PGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVG 222 (277)
Q Consensus 149 ~~I~~~---g~~~g~~i~p~t~~~~i~~~i~~~d~vl~mav~---Pgt~gq~~~~~~l~kI~~l~~~~~~~~i~vdGgV~ 222 (277)
+.++.. ...+-+.++.+..++....+...+|.+++=+-. +|-.|+.|.-.++... .....+.+.||+|
T Consensus 91 ~~l~~~~~~~v~kai~v~~~~~~~~~~~~~~~~d~~LlDa~~~~~~GGtG~~fDW~~l~~~------~~~~~~~LAGGL~ 164 (208)
T COG0135 91 DQLKEELGVPVIKAISVSEEGDLELAAREEGPVDAILLDAKVPGLPGGTGQTFDWNLLPKL------RLSKPVMLAGGLN 164 (208)
T ss_pred HHHHhhcCCceEEEEEeCCccchhhhhhccCCccEEEEcCCCCCCCCCCCcEECHHHhccc------cccCCEEEECCCC
Confidence 777763 233445555544455666677788888876642 4677888876665554 2334588999999
Q ss_pred cCcHHHHHHccC
Q psy11600 223 PNTIDECAKCLT 234 (277)
Q Consensus 223 ~~tv~~~~~~gp 234 (277)
.+|+.+..+.++
T Consensus 165 p~NV~~ai~~~~ 176 (208)
T COG0135 165 PDNVAEAIALGP 176 (208)
T ss_pred HHHHHHHHHhcC
Confidence 999999988777
No 91
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=96.45 E-value=0.033 Score=52.19 Aligned_cols=128 Identities=14% Similarity=0.112 Sum_probs=89.9
Q ss_pred eEeeeccccCcccHHHHHHHHHHcCCCEEEEeccccccccC---------------CCCCHHHHHHHHhcCCCCeeeeee
Q psy11600 7 MIGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPN---------------LTFGHPVVKCLRNKIPKAFFETHM 71 (277)
Q Consensus 7 ~~~~s~~~~d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~---------------~~~g~~~v~~l~~~~~~~~~d~Hl 71 (277)
.++++++..|...+.+..+.+++.|+|. +|+-=| +|+ -.+--++++++|+. .++|+.+-+
T Consensus 66 ~~~vQl~g~~~~~~~~aa~~~~~~g~d~--IdlN~g--CP~~~v~~~g~Gs~ll~~p~~~~eiv~av~~a-~d~pv~vKi 140 (321)
T PRK10415 66 IRTVQIAGSDPKEMADAARINVESGAQI--IDINMG--CPAKKVNRKLAGSALLQYPDLVKSILTEVVNA-VDVPVTLKI 140 (321)
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHCCCCE--EEEeCC--CCHHHHcCCCcccHHhcCHHHHHHHHHHHHHh-cCCceEEEE
Confidence 3568899999999999888888888887 665433 332 12223556777775 577777655
Q ss_pred ecc------CcHHhHHHHHhcCCCeEEEeccCCC------CCHHHHHHHHhhCCCcc----cc--hhhhhHHHHhcCCCe
Q psy11600 72 MVQ------NPQQWIEPMADANVDQYTFHVEPVD------NVPQVIRQIKEAGMKVG----QV--LQDWIEPMADANVDQ 133 (277)
Q Consensus 72 mv~------~p~~~i~~l~~ag~d~i~~H~e~~d------~g~~~i~~i~~~~~~~~----d~--p~~~i~~~~~~g~d~ 133 (277)
-.. +..+.++.+.++|++.+++|.-... ...+.++++++.+..|+ ++ +++..+.+...|||.
T Consensus 141 R~G~~~~~~~~~~~a~~le~~G~d~i~vh~rt~~~~~~G~a~~~~i~~ik~~~~iPVI~nGgI~s~~da~~~l~~~gadg 220 (321)
T PRK10415 141 RTGWAPEHRNCVEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADA 220 (321)
T ss_pred EccccCCcchHHHHHHHHHHhCCCEEEEecCccccccCCCcChHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHhccCCCE
Confidence 321 2345677889999999999965422 14678888888877665 23 777777777789999
Q ss_pred EEeecC
Q psy11600 134 YTFHVE 139 (277)
Q Consensus 134 it~H~E 139 (277)
|.+--.
T Consensus 221 VmiGR~ 226 (321)
T PRK10415 221 LMIGRA 226 (321)
T ss_pred EEEChH
Confidence 988643
No 92
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=96.40 E-value=0.11 Score=45.82 Aligned_cols=138 Identities=17% Similarity=0.198 Sum_probs=82.0
Q ss_pred HHHHHHHhcCCCCeeeeeeeccC----cHHhHHHHHhcCCCeEEEeccCCCCCHHHHHHHHhhCCCcc-cc-hhhhhHHH
Q psy11600 53 PVVKCLRNKIPKAFFETHMMVQN----PQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVG-QV-LQDWIEPM 126 (277)
Q Consensus 53 ~~v~~l~~~~~~~~~d~Hlmv~~----p~~~i~~l~~ag~d~i~~H~e~~d~g~~~i~~i~~~~~~~~-d~-p~~~i~~~ 126 (277)
+.++.+++. .+.++-+.+++.+ ..+.++.+.++|+|.+++|.. ..+.+++++++.....+ .+ +...+..+
T Consensus 43 ~~~~~i~~~-~~~~~~v~~i~~~~~~~~~~~~~~~~~~g~d~v~l~~~---~~~~~~~~~~~~~i~~i~~v~~~~~~~~~ 118 (236)
T cd04730 43 AEIRKIRAL-TDKPFGVNLLVPSSNPDFEALLEVALEEGVPVVSFSFG---PPAEVVERLKAAGIKVIPTVTSVEEARKA 118 (236)
T ss_pred HHHHHHHHh-cCCCeEEeEecCCCCcCHHHHHHHHHhCCCCEEEEcCC---CCHHHHHHHHHcCCEEEEeCCCHHHHHHH
Confidence 456777764 3456778888875 445688889999999977644 34667777766432221 11 34445666
Q ss_pred HhcCCCeEEeecCCCCChHHHHHHHHHhCCccceeeCCCCCHHhHHHHHhhcCceEEEEecCCCCCchhhhhhhhhHHHH
Q psy11600 127 ADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIMTVEPGFGGQKFMQDMMPKVKWL 206 (277)
Q Consensus 127 ~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~i~p~t~~~~i~~~i~~~d~vl~mav~Pgt~gq~~~~~~l~kI~~l 206 (277)
.+.|+|++.++.- .++..+..+....++.++++
T Consensus 119 ~~~gad~i~~~~~-----------------------------------------------~~~G~~~~~~~~~~~~i~~i 151 (236)
T cd04730 119 EAAGADALVAQGA-----------------------------------------------EAGGHRGTFDIGTFALVPEV 151 (236)
T ss_pred HHcCCCEEEEeCc-----------------------------------------------CCCCCCCccccCHHHHHHHH
Confidence 6677777766521 00000000001123334444
Q ss_pred HhhCCCccEEEeCCCCc-CcHHHHHHccCCC---CCcccc
Q psy11600 207 RENYPTLNIEVDGGVGP-NTIDECAKCLTGF---GGQKFM 242 (277)
Q Consensus 207 ~~~~~~~~i~vdGgV~~-~tv~~~~~~gpg~---ggq~F~ 242 (277)
++.. ++-+.+.||++. +++.++.+.|++. |+..+.
T Consensus 152 ~~~~-~~Pvi~~GGI~~~~~v~~~l~~GadgV~vgS~l~~ 190 (236)
T cd04730 152 RDAV-DIPVIAAGGIADGRGIAAALALGADGVQMGTRFLA 190 (236)
T ss_pred HHHh-CCCEEEECCCCCHHHHHHHHHcCCcEEEEchhhhc
Confidence 4432 467889999987 8899988988885 554443
No 93
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=96.39 E-value=0.21 Score=44.46 Aligned_cols=180 Identities=18% Similarity=0.240 Sum_probs=103.2
Q ss_pred EEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEEeccCCCC-----CHHHHHHHH
Q psy11600 35 LHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTFHVEPVDN-----VPQVIRQIK 109 (277)
Q Consensus 35 ~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~H~e~~d~-----g~~~i~~i~ 109 (277)
..+|+.+|..|.-. + .++ . ....+|.+.++.+.++|++.+++|-=..++ -..++++++
T Consensus 5 ~~iD~~~g~~v~~~--~------~~~----~-----~~~~d~~~~a~~~~~~G~~~i~i~d~~~~~~~~~~~~~~i~~i~ 67 (243)
T cd04731 5 PCLDVKDGRVVKGV--N------FKN----L-----RDAGDPVELAKRYNEQGADELVFLDITASSEGRETMLDVVERVA 67 (243)
T ss_pred EEEEEECCeEEEeE--c------ccc----c-----eeCCCHHHHHHHHHHCCCCEEEEEcCCcccccCcccHHHHHHHH
Confidence 45899999887332 1 111 0 146699999999999999999776222222 456788888
Q ss_pred hhCCCcccc-----hhhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCC-ccceeeCCC-----------------C
Q psy11600 110 EAGMKVGQV-----LQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGM-KVGLAIKPK-----------------T 166 (277)
Q Consensus 110 ~~~~~~~d~-----p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~-~~g~~i~p~-----------------t 166 (277)
+....|+-. -.+-++.+.+.|++.+.+-.+.-.++..+.+..++.+. +..+++..- +
T Consensus 68 ~~~~~pv~~~GGI~s~~d~~~~l~~G~~~v~ig~~~~~~p~~~~~i~~~~~~~~i~~~ld~k~~~~~~~~v~~~~~~~~~ 147 (243)
T cd04731 68 EEVFIPLTVGGGIRSLEDARRLLRAGADKVSINSAAVENPELIREIAKRFGSQCVVVSIDAKRRGDGGYEVYTHGGRKPT 147 (243)
T ss_pred HhCCCCEEEeCCCCCHHHHHHHHHcCCceEEECchhhhChHHHHHHHHHcCCCCEEEEEEeeecCCCceEEEEcCCceec
Confidence 877666544 33455666678999988865522233344455555542 223333210 1
Q ss_pred CHH--hHHHHHh--hcCceEEEEecCCCCCchhhhhhhhhHHHHHhhCCCccEEEeCCCC-cCcHHHHHHc-cCC
Q psy11600 167 PVD--VIAEYIE--SADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVG-PNTIDECAKC-LTG 235 (277)
Q Consensus 167 ~~~--~i~~~i~--~~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~~~~~i~vdGgV~-~~tv~~~~~~-gpg 235 (277)
..+ .+.+.+. .+|.+++..+......+.+..++ ++++++. ..+.+..-||++ .+.+..+.+. |.+
T Consensus 148 ~~~~~~~~~~l~~~G~d~i~v~~i~~~g~~~g~~~~~---i~~i~~~-~~~pvia~GGi~~~~di~~~l~~~g~d 218 (243)
T cd04731 148 GLDAVEWAKEVEELGAGEILLTSMDRDGTKKGYDLEL---IRAVSSA-VNIPVIASGGAGKPEHFVEAFEEGGAD 218 (243)
T ss_pred CCCHHHHHHHHHHCCCCEEEEeccCCCCCCCCCCHHH---HHHHHhh-CCCCEEEeCCCCCHHHHHHHHHhCCCC
Confidence 111 2223333 35777776666533333333333 3444332 257788899995 5567766665 664
No 94
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=96.39 E-value=0.033 Score=51.41 Aligned_cols=129 Identities=15% Similarity=0.108 Sum_probs=83.3
Q ss_pred ceEeeeccccCcccHHHHHHHHHHcC-CCEEEEecc-----c-c-ccccCCCCCHHHHHHHHhcCCCCeeeeeeec--cC
Q psy11600 6 CMIGPSILNSDLSNLHSESQNLLDSG-ADYLHLDVM-----D-G-TFVPNLTFGHPVVKCLRNKIPKAFFETHMMV--QN 75 (277)
Q Consensus 6 ~~~~~s~~~~d~~~l~~~~~~l~~~~-~~~~h~Dim-----D-g-~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv--~~ 75 (277)
..+.+||...+...+.+..+++++.| +|.+=+-+. . | .+..+..+-.++++++|+. .++|+.+.+-. .+
T Consensus 92 ~p~i~si~g~~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~-~~~pv~vKl~~~~~~ 170 (301)
T PRK07259 92 TPIIANVAGSTEEEYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEV-VKVPVIVKLTPNVTD 170 (301)
T ss_pred CcEEEEeccCCHHHHHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHh-cCCCEEEEcCCCchh
Confidence 45789999999999999999999998 999544331 1 1 1111222346778888886 58888887752 24
Q ss_pred cHHhHHHHHhcCCCeEEEec-------cCCC---------C----------CHHHHHHHHhhCCCcccc------hhhhh
Q psy11600 76 PQQWIEPMADANVDQYTFHV-------EPVD---------N----------VPQVIRQIKEAGMKVGQV------LQDWI 123 (277)
Q Consensus 76 p~~~i~~l~~ag~d~i~~H~-------e~~d---------~----------g~~~i~~i~~~~~~~~d~------p~~~i 123 (277)
..+.++.+.++|+|.++++- +... + ....++++++....|+-. +++..
T Consensus 171 ~~~~a~~l~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~p~~l~~v~~i~~~~~ipvi~~GGI~~~~da~ 250 (301)
T PRK07259 171 IVEIAKAAEEAGADGLSLINTLKGMAIDIKTRKPILANVTGGLSGPAIKPIALRMVYQVYQAVDIPIIGMGGISSAEDAI 250 (301)
T ss_pred HHHHHHHHHHcCCCEEEEEccccccccccccCceeecCCcCccCCcCcccccHHHHHHHHHhCCCCEEEECCCCCHHHHH
Confidence 44567888899999997631 1110 1 245677777766554422 55555
Q ss_pred HHHHhcCCCeEEe
Q psy11600 124 EPMADANVDQYTF 136 (277)
Q Consensus 124 ~~~~~~g~d~it~ 136 (277)
+.+ .+|||.|.+
T Consensus 251 ~~l-~aGAd~V~i 262 (301)
T PRK07259 251 EFI-MAGASAVQV 262 (301)
T ss_pred HHH-HcCCCceeE
Confidence 555 477777665
No 95
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=96.38 E-value=0.071 Score=48.72 Aligned_cols=84 Identities=14% Similarity=0.077 Sum_probs=62.2
Q ss_pred ceEeeeccccCcccHHHHHHHHHHcCCCEEEEeccccccccCCCC----------CHHHHHHHHhcCCCCeeeeeeeccC
Q psy11600 6 CMIGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTF----------GHPVVKCLRNKIPKAFFETHMMVQN 75 (277)
Q Consensus 6 ~~~~~s~~~~d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~----------g~~~v~~l~~~~~~~~~d~Hlmv~~ 75 (277)
..+.+||...+...+.+..+.+++.|+|.+=+.+- +||... --++++++|+. .++|+.+-+-...
T Consensus 99 ~pvi~si~g~~~~~~~~~a~~~~~~G~d~ielN~~----cP~~~~~~~~~~~~~~~~eiv~~vr~~-~~~pv~vKl~~~~ 173 (289)
T cd02810 99 QPLIASVGGSSKEDYVELARKIERAGAKALELNLS----CPNVGGGRQLGQDPEAVANLLKAVKAA-VDIPLLVKLSPYF 173 (289)
T ss_pred CeEEEEeccCCHHHHHHHHHHHHHhCCCEEEEEcC----CCCCCCCcccccCHHHHHHHHHHHHHc-cCCCEEEEeCCCC
Confidence 45788999888889999999999999998655553 444332 12468888876 4778877766543
Q ss_pred ----cHHhHHHHHhcCCCeEEEe
Q psy11600 76 ----PQQWIEPMADANVDQYTFH 94 (277)
Q Consensus 76 ----p~~~i~~l~~ag~d~i~~H 94 (277)
..+.++.+.++|+|.+++|
T Consensus 174 ~~~~~~~~a~~l~~~Gad~i~~~ 196 (289)
T cd02810 174 DLEDIVELAKAAERAGADGLTAI 196 (289)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEE
Confidence 3456788889999999988
No 96
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=96.37 E-value=0.054 Score=49.77 Aligned_cols=129 Identities=16% Similarity=0.128 Sum_probs=81.6
Q ss_pred ceEeeeccccCcccHHHHHHHHHHcCCCEEEEeccc-------cccccCCCCCHHHHHHHHhcCCCCeeeeeeec--cCc
Q psy11600 6 CMIGPSILNSDLSNLHSESQNLLDSGADYLHLDVMD-------GTFVPNLTFGHPVVKCLRNKIPKAFFETHMMV--QNP 76 (277)
Q Consensus 6 ~~~~~s~~~~d~~~l~~~~~~l~~~~~~~~h~DimD-------g~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv--~~p 76 (277)
..+.+||...+...+.+..+++++.|+|.+=+-+.- ..|..+..+-.++++++|+. .++|+.+-+=. .+.
T Consensus 90 ~p~ivsi~g~~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~-~~~Pv~vKl~~~~~~~ 168 (296)
T cd04740 90 TPVIASIAGSTVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKA-TDVPVIVKLTPNVTDI 168 (296)
T ss_pred CcEEEEEecCCHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhc-cCCCEEEEeCCCchhH
Confidence 457889998899999999999999999994443321 11111222234678889885 57888876522 124
Q ss_pred HHhHHHHHhcCCCeEEEe---------ccCCC-------C----------CHHHHHHHHhhCCCcccc------hhhhhH
Q psy11600 77 QQWIEPMADANVDQYTFH---------VEPVD-------N----------VPQVIRQIKEAGMKVGQV------LQDWIE 124 (277)
Q Consensus 77 ~~~i~~l~~ag~d~i~~H---------~e~~d-------~----------g~~~i~~i~~~~~~~~d~------p~~~i~ 124 (277)
.+.++.+.++|+|.++++ .+... + ....++.+++....++-. |++..+
T Consensus 169 ~~~a~~~~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~~~~~~~i~~i~~~~~ipii~~GGI~~~~da~~ 248 (296)
T cd04740 169 VEIARAAEEAGADGLTLINTLKGMAIDIETRKPILGNVTGGLSGPAIKPIALRMVYQVYKAVEIPIIGVGGIASGEDALE 248 (296)
T ss_pred HHHHHHHHHcCCCEEEEECCCcccccccccCceeecCCcceecCcccchHHHHHHHHHHHhcCCCEEEECCCCCHHHHHH
Confidence 455777889999998763 22100 1 126677777766544321 555555
Q ss_pred HHHhcCCCeEEe
Q psy11600 125 PMADANVDQYTF 136 (277)
Q Consensus 125 ~~~~~g~d~it~ 136 (277)
.+ ++|||.|.+
T Consensus 249 ~l-~~GAd~V~i 259 (296)
T cd04740 249 FL-MAGASAVQV 259 (296)
T ss_pred HH-HcCCCEEEE
Confidence 55 478887776
No 97
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=96.36 E-value=0.074 Score=46.76 Aligned_cols=167 Identities=12% Similarity=0.106 Sum_probs=97.7
Q ss_pred CCeeeeeeeccC-------cHHhHHHHHhcCCCeEEEeccCCCCCHHHHHHHHhhCCCccc------ch---------hh
Q psy11600 64 KAFFETHMMVQN-------PQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQ------VL---------QD 121 (277)
Q Consensus 64 ~~~~d~Hlmv~~-------p~~~i~~l~~ag~d~i~~H~e~~d~g~~~i~~i~~~~~~~~d------~p---------~~ 121 (277)
.+.++|.+.-.. +.+..+.+.++|+..+.+ +.+..++.+|+.+..|+- .+ ..
T Consensus 10 ~~~~~~~~~~~~~~~~~~~i~~~a~~~~~~G~~~~~~------~~~~~~~~i~~~~~iPil~~~~~~~~~~~~~ig~~~~ 83 (219)
T cd04729 10 GLIVSCQALPGEPLHSPEIMAAMALAAVQGGAVGIRA------NGVEDIRAIRARVDLPIIGLIKRDYPDSEVYITPTIE 83 (219)
T ss_pred CeEEEccCCCCCCcCcHHHHHHHHHHHHHCCCeEEEc------CCHHHHHHHHHhCCCCEEEEEecCCCCCCceeCCCHH
Confidence 566666665443 344677788889987753 567889999987655542 11 22
Q ss_pred hhHHHHhcCCCeEEeecC----CC-CChHHHHHHHHHhCCccceeeCCCCCHHhHHHHHh-hcCceEEEEecC-CCCCch
Q psy11600 122 WIEPMADANVDQYTFHVE----PV-DNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIE-SADLVLIMTVEP-GFGGQK 194 (277)
Q Consensus 122 ~i~~~~~~g~d~it~H~E----~~-~~~~~~~~~I~~~g~~~g~~i~p~t~~~~i~~~i~-~~d~vl~mav~P-gt~gq~ 194 (277)
.++..+++|+|.|.+-.- |. ....++++.+++.| ..-+...+. +.+....... .+|++ .+++ |+.+..
T Consensus 84 ~~~~a~~aGad~I~~~~~~~~~p~~~~~~~~i~~~~~~g-~~~iiv~v~-t~~ea~~a~~~G~d~i---~~~~~g~t~~~ 158 (219)
T cd04729 84 EVDALAAAGADIIALDATDRPRPDGETLAELIKRIHEEY-NCLLMADIS-TLEEALNAAKLGFDII---GTTLSGYTEET 158 (219)
T ss_pred HHHHHHHcCCCEEEEeCCCCCCCCCcCHHHHHHHHHHHh-CCeEEEECC-CHHHHHHHHHcCCCEE---EccCccccccc
Confidence 678889999999888421 11 14556777777766 222223333 3343333222 23443 2332 221111
Q ss_pred --hhhhhhhhHHHHHhhCCCccEEEeCCC-CcCcHHHHHHccCCC---CCcccc
Q psy11600 195 --FMQDMMPKVKWLRENYPTLNIEVDGGV-GPNTIDECAKCLTGF---GGQKFM 242 (277)
Q Consensus 195 --~~~~~l~kI~~l~~~~~~~~i~vdGgV-~~~tv~~~~~~gpg~---ggq~F~ 242 (277)
.....++-++.+++.. ++.+.+.||| +.+++.++.+.|++. |+..+.
T Consensus 159 ~~~~~~~~~~l~~i~~~~-~ipvia~GGI~~~~~~~~~l~~GadgV~vGsal~~ 211 (219)
T cd04729 159 AKTEDPDFELLKELRKAL-GIPVIAEGRINSPEQAAKALELGADAVVVGSAITR 211 (219)
T ss_pred cCCCCCCHHHHHHHHHhc-CCCEEEeCCCCCHHHHHHHHHCCCCEEEEchHHhC
Confidence 1112234556666544 5788999999 688999999998875 555444
No 98
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=96.36 E-value=0.096 Score=46.08 Aligned_cols=161 Identities=14% Similarity=0.117 Sum_probs=97.0
Q ss_pred cHHhHHHHHhcCCCeEEEeccCCCCCHHHHHHHHhhCCCccc-----------c---h-hhhhHHHHhcCCCeEEeec--
Q psy11600 76 PQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQ-----------V---L-QDWIEPMADANVDQYTFHV-- 138 (277)
Q Consensus 76 p~~~i~~l~~ag~d~i~~H~e~~d~g~~~i~~i~~~~~~~~d-----------~---p-~~~i~~~~~~g~d~it~H~-- 138 (277)
+.+..+.+.++|+..+++ .++..++.+|+.+..|+- + + .++++...++|||.|++=.
T Consensus 25 ~~~~a~a~~~~G~~~~~~------~~~~~i~~i~~~~~~Pil~~~~~d~~~~~~~~~~~~~~v~~a~~aGad~I~~d~~~ 98 (221)
T PRK01130 25 MAAMALAAVQGGAVGIRA------NGVEDIKAIRAVVDVPIIGIIKRDYPDSEVYITPTLKEVDALAAAGADIIALDATL 98 (221)
T ss_pred HHHHHHHHHHCCCeEEEc------CCHHHHHHHHHhCCCCEEEEEecCCCCCCceECCCHHHHHHHHHcCCCEEEEeCCC
Confidence 445677788889988743 248899999998766642 1 2 3478999999999888622
Q ss_pred ------CCCCChHHHHHHHHH-hCCccceeeCCCCCHHhHHHHHhh-cCceEEEEecC-CCCCc--hhhhhhhhhHHHHH
Q psy11600 139 ------EPVDNVPQVIRQIKE-AGMKVGLAIKPKTPVDVIAEYIES-ADLVLIMTVEP-GFGGQ--KFMQDMMPKVKWLR 207 (277)
Q Consensus 139 ------E~~~~~~~~~~~I~~-~g~~~g~~i~p~t~~~~i~~~i~~-~d~vl~mav~P-gt~gq--~~~~~~l~kI~~l~ 207 (277)
| ...++++.+++ .++.... +.++.+.+....+. +|++. ++. |..+. ......++.+++++
T Consensus 99 ~~~p~~~---~~~~~i~~~~~~~~i~vi~---~v~t~ee~~~a~~~G~d~i~---~~~~g~t~~~~~~~~~~~~~i~~i~ 169 (221)
T PRK01130 99 RPRPDGE---TLAELVKRIKEYPGQLLMA---DCSTLEEGLAAQKLGFDFIG---TTLSGYTEETKKPEEPDFALLKELL 169 (221)
T ss_pred CCCCCCC---CHHHHHHHHHhCCCCeEEE---eCCCHHHHHHHHHcCCCEEE---cCCceeecCCCCCCCcCHHHHHHHH
Confidence 3 45667777776 4433222 23455555443322 45432 221 11111 11222345566666
Q ss_pred hhCCCccEEEeCCC-CcCcHHHHHHccCCC---CCcccccCHHHHHHHHHh
Q psy11600 208 ENYPTLNIEVDGGV-GPNTIDECAKCLTGF---GGQKFMQDMMPKVKWLRE 254 (277)
Q Consensus 208 ~~~~~~~i~vdGgV-~~~tv~~~~~~gpg~---ggq~F~~~~~~kI~~l~~ 254 (277)
+.. ++.+.+.||+ +.+++..+.+.|++. |+..+.+ .+..+++++
T Consensus 170 ~~~-~iPvia~GGI~t~~~~~~~l~~GadgV~iGsai~~~--~~~~~~~~~ 217 (221)
T PRK01130 170 KAV-GCPVIAEGRINTPEQAKKALELGAHAVVVGGAITRP--EEITKWFVD 217 (221)
T ss_pred HhC-CCCEEEECCCCCHHHHHHHHHCCCCEEEEchHhcCC--HHHHHHHHH
Confidence 654 5778899999 589999999999885 5554443 233344443
No 99
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=96.34 E-value=0.069 Score=44.51 Aligned_cols=156 Identities=15% Similarity=0.133 Sum_probs=83.8
Q ss_pred CcHHhHHHHHhcCCCeEEEeccCCC----C--CHHHHHHHHhhCCCcccc------hhhhh----HHHHhcCCCeEEeec
Q psy11600 75 NPQQWIEPMADANVDQYTFHVEPVD----N--VPQVIRQIKEAGMKVGQV------LQDWI----EPMADANVDQYTFHV 138 (277)
Q Consensus 75 ~p~~~i~~l~~ag~d~i~~H~e~~d----~--g~~~i~~i~~~~~~~~d~------p~~~i----~~~~~~g~d~it~H~ 138 (277)
++.++++.+.+.|++.+++-....+ . ++..++.+++....++.+ +..++ +...++|+|.|.+|.
T Consensus 13 ~~~~~~~~~~~~G~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~d~v~l~~ 92 (200)
T cd04722 13 DPVELAKAAAEAGADAIIVGTRSSDPEEAETDDKEVLKEVAAETDLPLGVQLAINDAAAAVDIAAAAARAAGADGVEIHG 92 (200)
T ss_pred HHHHHHHHHHcCCCCEEEEeeEEECcccCCCccccHHHHHHhhcCCcEEEEEccCCchhhhhHHHHHHHHcCCCEEEEec
Confidence 4567788888999999844422111 1 223466666665544322 45555 478899999999998
Q ss_pred CCCCChHH---HHHHHHHhCCccceeeCCCCCHHhHHHHHhhc-CceEEEEecCCCCCchhhhhhhhhHHHHHhhCCCcc
Q psy11600 139 EPVDNVPQ---VIRQIKEAGMKVGLAIKPKTPVDVIAEYIESA-DLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPTLN 214 (277)
Q Consensus 139 E~~~~~~~---~~~~I~~~g~~~g~~i~p~t~~~~i~~~i~~~-d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~~~~~ 214 (277)
+ .... ..+.++++ -+.. ++.++..+.+.+... .. .+.+. .++
T Consensus 93 ~---~~~~~~~~~~~~~~i--------------------~~~~~~~~v~~~~~~~~~~~--------~~-~~~~~--g~d 138 (200)
T cd04722 93 A---VGYLAREDLELIREL--------------------REAVPDVKVVVKLSPTGELA--------AA-AAEEA--GVD 138 (200)
T ss_pred c---CCcHHHHHHHHHHHH--------------------HHhcCCceEEEEECCCCccc--------hh-hHHHc--CCC
Confidence 7 5422 33344332 1222 566677777654321 10 02211 234
Q ss_pred EEEeCCCCcCcHHHHHHccCCCCCcccccCHHHHHHHHHhhCCCCeEEEeCCCCc-cCHHHhh
Q psy11600 215 IEVDGGVGPNTIDECAKCLTGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGP-NTIDECA 276 (277)
Q Consensus 215 i~vdGgV~~~tv~~~~~~gpg~ggq~F~~~~~~kI~~l~~~~~~~~I~VDGGI~~-~~~~~~~ 276 (277)
....++.. ++.+++...+.....++.+++ ..+..+.++|||+. +++.++.
T Consensus 139 ~i~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~-~~~~pi~~~GGi~~~~~~~~~~ 189 (200)
T cd04722 139 EVGLGNGG-----------GGGGGRDAVPIADLLLILAKR-GSKVPVIAGGGINDPEDAAEAL 189 (200)
T ss_pred EEEEcCCc-----------CCCCCccCchhHHHHHHHHHh-cCCCCEEEECCCCCHHHHHHHH
Confidence 43322221 222222222222334444443 34677999999998 8887654
No 100
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=96.29 E-value=0.19 Score=44.96 Aligned_cols=176 Identities=14% Similarity=0.121 Sum_probs=100.8
Q ss_pred EeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEEe-ccCCCC---CHHHHHHHHhhC
Q psy11600 37 LDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTFH-VEPVDN---VPQVIRQIKEAG 112 (277)
Q Consensus 37 ~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~H-~e~~d~---g~~~i~~i~~~~ 112 (277)
+|++||..|.-..+... . .....+|.+.++.+.+.|++++|+= ++...+ ..++|+++.+.+
T Consensus 8 iDl~~G~~Vr~~~G~~~-------~--------~~~~~dP~~~a~~~~~~ga~~lhivDLd~a~~~~~n~~~i~~i~~~~ 72 (232)
T PRK13586 8 IDISLGKAVKRIRGVKG-------T--------GLILGNPIEIASKLYNEGYTRIHVVDLDAAEGVGNNEMYIKEISKIG 72 (232)
T ss_pred EEEECCEEEEeeecCCC-------C--------ceEcCCHHHHHHHHHHCCCCEEEEEECCCcCCCcchHHHHHHHHhhC
Confidence 89999998865444221 1 1224699999999999999999321 333222 457788887744
Q ss_pred CCcccc-----hhhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCC-ccceeeCC--------------CCCHHhHH
Q psy11600 113 MKVGQV-----LQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGM-KVGLAIKP--------------KTPVDVIA 172 (277)
Q Consensus 113 ~~~~d~-----p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~-~~g~~i~p--------------~t~~~~i~ 172 (277)
..|+.+ -.+-++.+.+.||+.+.+-.++.++++-+.+..+..|- +.-+++-. +.++..+.
T Consensus 73 ~~~v~vGGGIrs~e~~~~~l~~Ga~kvvigt~a~~~p~~~~~~~~~~g~~~ivvslD~~~~~~v~~~gw~~~~~~~~e~~ 152 (232)
T PRK13586 73 FDWIQVGGGIRDIEKAKRLLSLDVNALVFSTIVFTNFNLFHDIVREIGSNRVLVSIDYDNTKRVLIRGWKEKSMEVIDGI 152 (232)
T ss_pred CCCEEEeCCcCCHHHHHHHHHCCCCEEEECchhhCCHHHHHHHHHHhCCCCEEEEEEcCCCCEEEccCCeeCCCCHHHHH
Confidence 346665 35567888889999999988855555545555555541 11122222 11223334
Q ss_pred HHHhhc--CceEEEEecCCCCCchhhhhhhhhHHHHHhhCCCccEEEeCCCCc-CcHHHHHHc
Q psy11600 173 EYIESA--DLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGP-NTIDECAKC 232 (277)
Q Consensus 173 ~~i~~~--d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~~~~~i~vdGgV~~-~tv~~~~~~ 232 (277)
+.+... .-+++..+.-.-..+-+..++++++ .+. +.. +..-||+.- +-+..+.+.
T Consensus 153 ~~l~~~g~~~ii~tdI~~dGt~~G~d~el~~~~---~~~-~~~-viasGGv~s~~Dl~~l~~~ 210 (232)
T PRK13586 153 KKVNELELLGIIFTYISNEGTTKGIDYNVKDYA---RLI-RGL-KEYAGGVSSDADLEYLKNV 210 (232)
T ss_pred HHHHhcCCCEEEEecccccccCcCcCHHHHHHH---HhC-CCC-EEEECCCCCHHHHHHHHHC
Confidence 444443 4566677766433344444444443 332 334 556788863 233334443
No 101
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=96.28 E-value=0.094 Score=49.28 Aligned_cols=163 Identities=10% Similarity=0.101 Sum_probs=98.9
Q ss_pred HHHHHHhcCCCCeeeeeeeccCcHHh---HHHHHhcCCCeEEEeccC--C--C--C------CHHHHHHHHhhCCCcccc
Q psy11600 54 VVKCLRNKIPKAFFETHMMVQNPQQW---IEPMADANVDQYTFHVEP--V--D--N------VPQVIRQIKEAGMKVGQV 118 (277)
Q Consensus 54 ~v~~l~~~~~~~~~d~Hlmv~~p~~~---i~~l~~ag~d~i~~H~e~--~--d--~------g~~~i~~i~~~~~~~~d~ 118 (277)
.++.+++. .+.|+-+.++-.++.++ ++.+.++|+|.+.+|+-. . + + -.++++++++.+..|+-+
T Consensus 92 ~i~~~~~~-~~~pvi~sI~g~~~~e~~~~a~~~~~agad~ielN~scpp~~~~~~g~~~~~~~~eil~~v~~~~~iPV~v 170 (334)
T PRK07565 92 LIRRAKEA-VDIPVIASLNGSSAGGWVDYARQIEQAGADALELNIYYLPTDPDISGAEVEQRYLDILRAVKSAVSIPVAV 170 (334)
T ss_pred HHHHHHHh-cCCcEEEEeccCCHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCCCccccHHHHHHHHHHHHHhccCCcEEE
Confidence 34445543 57899999988888764 566777899999987532 1 1 1 235678888887766644
Q ss_pred --------hhhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCCccceeeCCCCCHHhHHHHHhhcCceEEEEecCCC
Q psy11600 119 --------LQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIMTVEPGF 190 (277)
Q Consensus 119 --------p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~i~p~t~~~~i~~~i~~~d~vl~mav~Pgt 190 (277)
..+.++.+.++|+|.|++|-- .... .+-.....++ ..-|.
T Consensus 171 Kl~p~~~~~~~~a~~l~~~G~dgI~~~n~----~~~~-----------~~d~~~~~~~-----------------~~~gl 218 (334)
T PRK07565 171 KLSPYFSNLANMAKRLDAAGADGLVLFNR----FYQP-----------DIDLETLEVV-----------------PGLVL 218 (334)
T ss_pred EeCCCchhHHHHHHHHHHcCCCeEEEECC----cCCC-----------CcChhhcccc-----------------cCCCC
Confidence 356678888999999999842 1100 0000000000 02245
Q ss_pred CCchhhhhhhhhHHHHHhhCCCccEEEeCCCCc-CcHHHHHHccCCC---CCcccc--cCHHHHHH
Q psy11600 191 GGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGP-NTIDECAKCLTGF---GGQKFM--QDMMPKVK 250 (277)
Q Consensus 191 ~gq~~~~~~l~kI~~l~~~~~~~~i~vdGgV~~-~tv~~~~~~gpg~---ggq~F~--~~~~~kI~ 250 (277)
+|....+..++.+.++++.. ++.|.-.|||.- +.+.+++.+|++. ++..+. +...++|.
T Consensus 219 sg~~~~~~al~~v~~~~~~~-~ipIig~GGI~s~~Da~e~l~aGA~~V~v~t~~~~~g~~~~~~i~ 283 (334)
T PRK07565 219 STPAELRLPLRWIAILSGRV-GADLAATTGVHDAEDVIKMLLAGADVVMIASALLRHGPDYIGTIL 283 (334)
T ss_pred CCchhhhHHHHHHHHHHhhc-CCCEEEECCCCCHHHHHHHHHcCCCceeeehHHhhhCcHHHHHHH
Confidence 55555666666677776544 577888899852 4455566788885 444444 34444443
No 102
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=96.27 E-value=0.077 Score=48.96 Aligned_cols=169 Identities=15% Similarity=0.181 Sum_probs=97.9
Q ss_pred HHHHHHHhcC--CCCeeeeeeeccCcHHh---HHHHHhcC-CCeEEEeccC---CC-C---------CHHHHHHHHhhCC
Q psy11600 53 PVVKCLRNKI--PKAFFETHMMVQNPQQW---IEPMADAN-VDQYTFHVEP---VD-N---------VPQVIRQIKEAGM 113 (277)
Q Consensus 53 ~~v~~l~~~~--~~~~~d~Hlmv~~p~~~---i~~l~~ag-~d~i~~H~e~---~d-~---------g~~~i~~i~~~~~ 113 (277)
.+++.+++.. .+.|+-+.++-.+++++ .+.+.++| +|.+-+++-. .. | -.++++++|+.+.
T Consensus 78 ~~~~~~~~~~~~~~~p~i~si~g~~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~~~ 157 (301)
T PRK07259 78 AFIEEELPWLEEFDTPIIANVAGSTEEEYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEVVK 157 (301)
T ss_pred HHHHHHHHHHhccCCcEEEEeccCCHHHHHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhcC
Confidence 3555555422 26789999998888887 45556778 9999774311 11 1 4667888888776
Q ss_pred Ccccc--------hhhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCCccceeeCCCCCHHhHHHHHhhcCceEEEE
Q psy11600 114 KVGQV--------LQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIMT 185 (277)
Q Consensus 114 ~~~d~--------p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~i~p~t~~~~i~~~i~~~d~vl~ma 185 (277)
.|+.+ ....++.+.++|+|.++++-- .... ...+....+. +. .
T Consensus 158 ~pv~vKl~~~~~~~~~~a~~l~~~G~d~i~~~nt----~~g~-----------~~~~~~~~~~------~~--------~ 208 (301)
T PRK07259 158 VPVIVKLTPNVTDIVEIAKAAEEAGADGLSLINT----LKGM-----------AIDIKTRKPI------LA--------N 208 (301)
T ss_pred CCEEEEcCCCchhHHHHHHHHHHcCCCEEEEEcc----cccc-----------ccccccCcee------ec--------C
Confidence 56543 234567788899999887631 1100 0000000000 00 0
Q ss_pred ecCCCCCchhhhhhhhhHHHHHhhCCCccEEEeCCC-CcCcHHHHHHccCCC---CCccc-ccCHHHHHHH
Q psy11600 186 VEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGV-GPNTIDECAKCLTGF---GGQKF-MQDMMPKVKW 251 (277)
Q Consensus 186 v~Pgt~gq~~~~~~l~kI~~l~~~~~~~~i~vdGgV-~~~tv~~~~~~gpg~---ggq~F-~~~~~~kI~~ 251 (277)
-..|.+|....+..++.+.++++.. ++.+...||| +.+.+.+++.+|++. |.+.+ .|....|+++
T Consensus 209 ~~gg~sg~~~~p~~l~~v~~i~~~~-~ipvi~~GGI~~~~da~~~l~aGAd~V~igr~ll~~P~~~~~i~~ 278 (301)
T PRK07259 209 VTGGLSGPAIKPIALRMVYQVYQAV-DIPIIGMGGISSAEDAIEFIMAGASAVQVGTANFYDPYAFPKIIE 278 (301)
T ss_pred CcCccCCcCcccccHHHHHHHHHhC-CCCEEEECCCCCHHHHHHHHHcCCCceeEcHHHhcCcHHHHHHHH
Confidence 0011222222223455566666543 5788899999 678888888899886 44433 3677777764
No 103
>PRK07695 transcriptional regulator TenI; Provisional
Probab=96.24 E-value=0.2 Score=43.36 Aligned_cols=182 Identities=12% Similarity=0.090 Sum_probs=101.1
Q ss_pred EeeeccccCcccHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcC
Q psy11600 8 IGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADAN 87 (277)
Q Consensus 8 ~~~s~~~~d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag 87 (277)
|+++-++. ..+.+..+ +-+.|++++|+--=+...- -=...++.+++. ..+ ...+++.+. .+...+.|
T Consensus 7 it~~~~~~--~~~~~~~~-~~~~g~~~iqlR~k~~~~~----~~~~~~~~l~~~--~~~-~~~liin~~---~~la~~~~ 73 (201)
T PRK07695 7 ISNGHQSF--EELVAVAM-QIHSEVDYIHIREREKSAK----ELYEGVESLLKK--GVP-ASKLIINDR---VDIALLLN 73 (201)
T ss_pred EECCcccc--chHHHHHH-HHhCCCCEEEEcCCCCCHH----HHHHHHHHHHHh--CCC-CCeEEEECH---HHHHHHcC
Confidence 56665443 24555555 5567999999984331111 112345566643 112 235777775 34556678
Q ss_pred CCeEEEeccCCCCCHHHHHHHHhhCC-Ccc--cc-hhhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCCccceeeC
Q psy11600 88 VDQYTFHVEPVDNVPQVIRQIKEAGM-KVG--QV-LQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIK 163 (277)
Q Consensus 88 ~d~i~~H~e~~d~g~~~i~~i~~~~~-~~~--d~-p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~i~ 163 (277)
++.+ |+.-.+.. ++++|+... ..+ .+ ..+.+....++|+|+++++.- .... .
T Consensus 74 ~~gv--Hl~~~~~~---~~~~r~~~~~~~ig~s~~s~e~a~~a~~~Gadyi~~g~v---~~t~---------------~- 129 (201)
T PRK07695 74 IHRV--QLGYRSFS---VRSVREKFPYLHVGYSVHSLEEAIQAEKNGADYVVYGHV---FPTD---------------C- 129 (201)
T ss_pred CCEE--EeCcccCC---HHHHHHhCCCCEEEEeCCCHHHHHHHHHcCCCEEEECCC---CCCC---------------C-
Confidence 9988 65433321 345554321 111 11 233456666778888876431 1000 0
Q ss_pred CCCCHHhHHHHHhhcCceEEEEecCCCCCchhhhhhhhhHHHHHhhCCCccEEEeCCCCcCcHHHHHHccCCC---CCcc
Q psy11600 164 PKTPVDVIAEYIESADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKCLTGF---GGQK 240 (277)
Q Consensus 164 p~t~~~~i~~~i~~~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~~~~~i~vdGgV~~~tv~~~~~~gpg~---ggq~ 240 (277)
.|+.++. -++.++++.+.. ++.+...|||+..++.++.+.|+++ |+..
T Consensus 130 -----------------------k~~~~~~-----g~~~l~~~~~~~-~ipvia~GGI~~~~~~~~~~~Ga~gvav~s~i 180 (201)
T PRK07695 130 -----------------------KKGVPAR-----GLEELSDIARAL-SIPVIAIGGITPENTRDVLAAGVSGIAVMSGI 180 (201)
T ss_pred -----------------------CCCCCCC-----CHHHHHHHHHhC-CCCEEEEcCCCHHHHHHHHHcCCCEEEEEHHH
Confidence 1111110 023344444322 4778899999999999999999885 5555
Q ss_pred cc-cCHHHHHHHHHhh
Q psy11600 241 FM-QDMMPKVKWLREN 255 (277)
Q Consensus 241 F~-~~~~~kI~~l~~~ 255 (277)
+. ++..+..+++++.
T Consensus 181 ~~~~~p~~~~~~~~~~ 196 (201)
T PRK07695 181 FSSANPYSKAKRYAES 196 (201)
T ss_pred hcCCCHHHHHHHHHHH
Confidence 55 5778888877753
No 104
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=96.24 E-value=0.2 Score=45.09 Aligned_cols=193 Identities=15% Similarity=0.183 Sum_probs=108.6
Q ss_pred EEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEEe-ccCC-CC---CHHHHHHHHh
Q psy11600 36 HLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTFH-VEPV-DN---VPQVIRQIKE 110 (277)
Q Consensus 36 h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~H-~e~~-d~---g~~~i~~i~~ 110 (277)
.+|++||..|.-.. +.. . ....+|.+.++.+.++|++++++| .+.. .+ ....++++++
T Consensus 9 ~idl~~g~~V~~~~------------~~~----~-~~~~d~~~~a~~~~~~G~~~i~i~dl~~~~~~~~~~~~~i~~i~~ 71 (253)
T PRK02083 9 CLDVKDGRVVKGVN------------FVN----L-RDAGDPVELAKRYNEEGADELVFLDITASSEGRDTMLDVVERVAE 71 (253)
T ss_pred EEEEECCEEEEeEE------------ecc----e-eecCCHHHHHHHHHHcCCCEEEEEeCCcccccCcchHHHHHHHHH
Confidence 48999998884321 111 1 356799999999999999999887 2221 12 4567888888
Q ss_pred hCCCcccc-----hhhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhC-Cccceee--CC------------------
Q psy11600 111 AGMKVGQV-----LQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAG-MKVGLAI--KP------------------ 164 (277)
Q Consensus 111 ~~~~~~d~-----p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g-~~~g~~i--~p------------------ 164 (277)
....|+.. -.+-++.+.+.||+.+.+-.+...++..+.+..+..| -+.-+++ +.
T Consensus 72 ~~~ipv~~~GGi~s~~~~~~~l~~Ga~~Viigt~~l~~p~~~~ei~~~~g~~~iv~slD~~~~~~~~~~~v~~~~~~~~~ 151 (253)
T PRK02083 72 QVFIPLTVGGGIRSVEDARRLLRAGADKVSINSAAVANPELISEAADRFGSQCIVVAIDAKRDPEPGRWEVYTHGGRKPT 151 (253)
T ss_pred hCCCCEEeeCCCCCHHHHHHHHHcCCCEEEEChhHhhCcHHHHHHHHHcCCCCEEEEEEeccCCCCCCEEEEEcCCceec
Confidence 77666654 3445556666999999998752223434444444443 1112333 21
Q ss_pred CCCHHhHHHHHhh--cCceEEEEecCCCCCchhhhhhhhhHHHHHhhCCCccEEEeCCCCc-CcHHHHHH-ccCCC--CC
Q psy11600 165 KTPVDVIAEYIES--ADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGP-NTIDECAK-CLTGF--GG 238 (277)
Q Consensus 165 ~t~~~~i~~~i~~--~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~~~~~i~vdGgV~~-~tv~~~~~-~gpg~--gg 238 (277)
..+...+.+.+.. ++.+++..+...+..|.+. ++.++++.+.. .+.+..-||+.- +.+.++.+ .|.+. .|
T Consensus 152 ~~~~~~~~~~~~~~g~~~ii~~~i~~~g~~~g~d---~~~i~~~~~~~-~ipvia~GGv~s~~d~~~~~~~~G~~gvivg 227 (253)
T PRK02083 152 GLDAVEWAKEVEELGAGEILLTSMDRDGTKNGYD---LELTRAVSDAV-NVPVIASGGAGNLEHFVEAFTEGGADAALAA 227 (253)
T ss_pred CCCHHHHHHHHHHcCCCEEEEcCCcCCCCCCCcC---HHHHHHHHhhC-CCCEEEECCCCCHHHHHHHHHhCCccEEeEh
Confidence 1122223333333 4566666666644344443 33344444433 467889999973 23444444 36542 44
Q ss_pred cccc--cCHHHHH
Q psy11600 239 QKFM--QDMMPKV 249 (277)
Q Consensus 239 q~F~--~~~~~kI 249 (277)
..|. ...++.+
T Consensus 228 ~al~~~~~~~~~~ 240 (253)
T PRK02083 228 SIFHFGEITIGEL 240 (253)
T ss_pred HHHHcCCCCHHHH
Confidence 4444 3344443
No 105
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=96.15 E-value=0.17 Score=46.19 Aligned_cols=155 Identities=13% Similarity=0.171 Sum_probs=89.6
Q ss_pred cCcHHhHHHHHhcCCCeEEEeccCCCC----CHHHHHHHHhhCCCcccc----hhhhhHHHHhcCCCeEEeecCCCCC--
Q psy11600 74 QNPQQWIEPMADANVDQYTFHVEPVDN----VPQVIRQIKEAGMKVGQV----LQDWIEPMADANVDQYTFHVEPVDN-- 143 (277)
Q Consensus 74 ~~p~~~i~~l~~ag~d~i~~H~e~~d~----g~~~i~~i~~~~~~~~d~----p~~~i~~~~~~g~d~it~H~E~~~~-- 143 (277)
.+|.++++.+.+.|++|+ |+--.|+ ...+|++|++ +..++.+ =.+.++.+.++||+.|.+-.-+.++
T Consensus 43 ~dP~~~A~~~~~~Ga~~l--HvVDLdgg~~~n~~~i~~i~~-~~~~vqvGGGIR~e~i~~~l~~Ga~rViigT~Av~~~~ 119 (262)
T PLN02446 43 KSAAEFAEMYKRDGLTGG--HVIMLGADDASLAAALEALRA-YPGGLQVGGGVNSENAMSYLDAGASHVIVTSYVFRDGQ 119 (262)
T ss_pred CCHHHHHHHHHHCCCCEE--EEEECCCCCcccHHHHHHHHh-CCCCEEEeCCccHHHHHHHHHcCCCEEEEchHHHhCCC
Confidence 699999999999999999 6432233 4667888888 6667766 2388999999999999997542223
Q ss_pred --hHHHHHHHHHhCCc---c--------c---eeeCCC---C--CHHh-HHHHHh-hcCceEEEEecCCCCCchhhhhhh
Q psy11600 144 --VPQVIRQIKEAGMK---V--------G---LAIKPK---T--PVDV-IAEYIE-SADLVLIMTVEPGFGGQKFMQDMM 200 (277)
Q Consensus 144 --~~~~~~~I~~~g~~---~--------g---~~i~p~---t--~~~~-i~~~i~-~~d~vl~mav~Pgt~gq~~~~~~l 200 (277)
+.-+.+++++.|-. . | ++++-. | .+.. +..+.. .++-++.-.++-+-..+-+.-+++
T Consensus 120 ~~p~~v~~~~~~~G~~~IvvsiD~k~~~g~~~Va~~GW~~~t~~~~~e~~~~~~~~g~~eii~TdI~rDGtl~G~d~el~ 199 (262)
T PLN02446 120 IDLERLKDLVRLVGKQRLVLDLSCRKKDGRYYVVTDRWQKFSDLAVDEETLEFLAAYCDEFLVHGVDVEGKRLGIDEELV 199 (262)
T ss_pred CCHHHHHHHHHHhCCCCEEEEEEEEecCCCEEEEECCCcccCCCCHHHHHHHHHHhCCCEEEEEEEcCCCcccCCCHHHH
Confidence 44444555655411 1 1 222211 1 2222 233322 256666666666433333333333
Q ss_pred hhHHHHHhhCCCccEEEeCCCCc-CcHHHHHHccCC
Q psy11600 201 PKVKWLRENYPTLNIEVDGGVGP-NTIDECAKCLTG 235 (277)
Q Consensus 201 ~kI~~l~~~~~~~~i~vdGgV~~-~tv~~~~~~gpg 235 (277)
+++ .+. ..+.+...||+.- +-+..+.+.|.|
T Consensus 200 ~~l---~~~-~~ipVIASGGv~sleDi~~L~~~g~g 231 (262)
T PLN02446 200 ALL---GEH-SPIPVTYAGGVRSLDDLERVKVAGGG 231 (262)
T ss_pred HHH---Hhh-CCCCEEEECCCCCHHHHHHHHHcCCC
Confidence 333 332 4567888888852 223334444433
No 106
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=96.15 E-value=0.25 Score=45.54 Aligned_cols=204 Identities=13% Similarity=0.029 Sum_probs=119.1
Q ss_pred CcccHHHHHHHHHHcCCCEEE------Eeccc-cccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCC
Q psy11600 16 DLSNLHSESQNLLDSGADYLH------LDVMD-GTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANV 88 (277)
Q Consensus 16 d~~~l~~~~~~l~~~~~~~~h------~DimD-g~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~ 88 (277)
|..|- ++-+..+++|+=.+- -||-- |... =.=+|+.|+++++. .++|+-.-....+ ..+++.+.++|+
T Consensus 16 dv~~~-eqa~iae~aga~avm~le~~p~d~r~~ggv~--R~~~p~~I~~I~~~-V~iPVig~~kigh-~~Ea~~L~~~Gv 90 (287)
T TIGR00343 16 DVVNP-EQAKIAEEAGAVAVMALERVPADIRASGGVA--RMSDPKMIKEIMDA-VSIPVMAKVRIGH-FVEAQILEALGV 90 (287)
T ss_pred EeCCH-HHHHHHHHcCceEEEeeccCchhhHhcCCee--ecCCHHHHHHHHHh-CCCCEEEEeeccH-HHHHHHHHHcCC
Confidence 44444 455677788775522 24332 3332 12389999999986 7999999888877 667889999999
Q ss_pred CeEEEeccCC--CCCHHHHHHHHhhCCCcccch-hhhhHH--HHhcCCCeEEeecCCCCChHHHHHHHHHhCCccceeeC
Q psy11600 89 DQYTFHVEPV--DNVPQVIRQIKEAGMKVGQVL-QDWIEP--MADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIK 163 (277)
Q Consensus 89 d~i~~H~e~~--d~g~~~i~~i~~~~~~~~d~p-~~~i~~--~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~i~ 163 (277)
|+| . ++. .-..+++..+|+....++-+- ..+=+. -.+.|+|+|.=..|+.+ .++.+..+...
T Consensus 91 DiI--D-eTe~lrPade~~~~~K~~f~vpfmad~~~l~EAlrai~~GadmI~Tt~e~gT--g~v~~av~hlr-------- 157 (287)
T TIGR00343 91 DYI--D-ESEVLTPADWTFHIDKKKFKVPFVCGARDLGEALRRINEGAAMIRTKGEAGT--GNIVEAVRHMR-------- 157 (287)
T ss_pred CEE--E-ccCCCCcHHHHHHHHHHHcCCCEEccCCCHHHHHHHHHCCCCEEeccccCCC--ccHHHHHHHHH--------
Confidence 999 3 222 124567777777654455432 122222 25779999988877433 23332222110
Q ss_pred CCCCHHhHHHHHhhcCce----EEE--E--ecCCCCCchhhhhhhhhHHHHHhhCCCccEE--EeCCC-CcCcHHHHHHc
Q psy11600 164 PKTPVDVIAEYIESADLV----LIM--T--VEPGFGGQKFMQDMMPKVKWLRENYPTLNIE--VDGGV-GPNTIDECAKC 232 (277)
Q Consensus 164 p~t~~~~i~~~i~~~d~v----l~m--a--v~Pgt~gq~~~~~~l~kI~~l~~~~~~~~i~--vdGgV-~~~tv~~~~~~ 232 (277)
-+.+.++..... -++ + ..|+ ++.++++++.. ++-+. ..||| +..++..+++.
T Consensus 158 ------~~~~~~~~~~~~~~~~~~~~~a~~~~~~----------~elLkei~~~~-~iPVV~fAiGGI~TPedAa~~mel 220 (287)
T TIGR00343 158 ------KINEEIRQIQNMLEEEDLAAVAKELRVP----------VELLLEVLKLG-KLPVVNFAAGGVATPADAALMMQL 220 (287)
T ss_pred ------HHHHHHHHHhcccchhHHhhhhcccCCC----------HHHHHHHHHhC-CCCEEEeccCCCCCHHHHHHHHHc
Confidence 011111111000 000 0 1122 23455555432 34455 68999 99999999999
Q ss_pred cCCC---CCcccc-cCHHHHHHHHHh
Q psy11600 233 LTGF---GGQKFM-QDMMPKVKWLRE 254 (277)
Q Consensus 233 gpg~---ggq~F~-~~~~~kI~~l~~ 254 (277)
|++. |+..|. ++..+..+++++
T Consensus 221 GAdGVaVGSaI~ks~dP~~~akafv~ 246 (287)
T TIGR00343 221 GADGVFVGSGIFKSSNPEKLAKAIVE 246 (287)
T ss_pred CCCEEEEhHHhhcCCCHHHHHHHHHH
Confidence 9995 888887 466666666664
No 107
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=96.14 E-value=0.24 Score=45.86 Aligned_cols=172 Identities=15% Similarity=0.210 Sum_probs=98.2
Q ss_pred HHHHHhcCCCCeeeeeeecc-CcHHh---HHHHHhcCCCeEEEeccCCC-------C---------CHHHHHHHHhhCCC
Q psy11600 55 VKCLRNKIPKAFFETHMMVQ-NPQQW---IEPMADANVDQYTFHVEPVD-------N---------VPQVIRQIKEAGMK 114 (277)
Q Consensus 55 v~~l~~~~~~~~~d~Hlmv~-~p~~~---i~~l~~ag~d~i~~H~e~~d-------~---------g~~~i~~i~~~~~~ 114 (277)
++++++..++.|+-+.+.-. +++++ ++.+.++|+|.+.+-+-.-. | --++++++|+.+..
T Consensus 90 ~~~~~~~~~~~p~i~si~G~~~~~~~~~~a~~~~~~gad~ielN~sCP~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~ 169 (299)
T cd02940 90 IRELKKDFPDKILIASIMCEYNKEDWTELAKLVEEAGADALELNFSCPHGMPERGMGAAVGQDPELVEEICRWVREAVKI 169 (299)
T ss_pred HHHHHhhCCCCeEEEEecCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCCCCCchhhccCHHHHHHHHHHHHHhcCC
Confidence 44445544467888988887 88776 45555679999976544311 1 33456777777666
Q ss_pred cccc--------hhhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCCccceeeCCCCCHHhHHHHHhhcCceEEEEe
Q psy11600 115 VGQV--------LQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIMTV 186 (277)
Q Consensus 115 ~~d~--------p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~i~p~t~~~~i~~~i~~~d~vl~mav 186 (277)
|+.+ ..+.++.+.++|+|.|+++-- ..... .+.--+.+.-..+...| .
T Consensus 170 Pv~vKl~~~~~~~~~~a~~~~~~Gadgi~~~Nt----~~~~~-~id~~~~~~~~~~~~~~-------------------~ 225 (299)
T cd02940 170 PVIAKLTPNITDIREIARAAKEGGADGVSAINT----VNSLM-GVDLDGTPPAPGVEGKT-------------------T 225 (299)
T ss_pred CeEEECCCCchhHHHHHHHHHHcCCCEEEEecc----ccccc-ccccccCCccccccCCC-------------------C
Confidence 6654 245777788899999998631 11100 00000000000000000 0
Q ss_pred cCCCCCchhhhhhhhhHHHHHhhC-CCccEEEeCCCCc-CcHHHHHHccCCC---CCcccc--cCHHHHHH
Q psy11600 187 EPGFGGQKFMQDMMPKVKWLRENY-PTLNIEVDGGVGP-NTIDECAKCLTGF---GGQKFM--QDMMPKVK 250 (277)
Q Consensus 187 ~Pgt~gq~~~~~~l~kI~~l~~~~-~~~~i~vdGgV~~-~tv~~~~~~gpg~---ggq~F~--~~~~~kI~ 250 (277)
.=|++|....+-.++.|.++++.. +++.+...|||.- +.+.+++.+|++. +...+. +....+|.
T Consensus 226 ~gg~sG~a~~p~~l~~v~~~~~~~~~~ipIig~GGI~~~~da~~~l~aGA~~V~i~ta~~~~g~~~~~~i~ 296 (299)
T cd02940 226 YGGYSGPAVKPIALRAVSQIARAPEPGLPISGIGGIESWEDAAEFLLLGASVVQVCTAVMNQGFTIVDDMC 296 (299)
T ss_pred cCcccCCCcchHHHHHHHHHHHhcCCCCcEEEECCCCCHHHHHHHHHcCCChheEceeecccCCcHHHHHh
Confidence 114555444455677788887766 4789999999963 3444556688885 555444 45555543
No 108
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=96.11 E-value=0.39 Score=43.30 Aligned_cols=93 Identities=22% Similarity=0.238 Sum_probs=74.6
Q ss_pred eeeccCcHHhHHHHHhcCCCeEEEeccCCCC-------CHHHHHHHHhhCCCcccc-----hhhhhHHHHhcCCCeEEee
Q psy11600 70 HMMVQNPQQWIEPMADANVDQYTFHVEPVDN-------VPQVIRQIKEAGMKVGQV-----LQDWIEPMADANVDQYTFH 137 (277)
Q Consensus 70 Hlmv~~p~~~i~~l~~ag~d~i~~H~e~~d~-------g~~~i~~i~~~~~~~~d~-----p~~~i~~~~~~g~d~it~H 137 (277)
..+..+|.+..+.+.+.|+.|+ |+-=.|| ....|+.|.+.+..++.+ -.+.++.+.++|++.+.+-
T Consensus 27 ~~y~~~P~~~a~~~~~~Ga~~l--HlVDLdgA~~g~~~n~~~i~~i~~~~~~~vQvGGGIRs~~~v~~ll~~G~~rViiG 104 (241)
T COG0106 27 TVYSDDPLEVAKKWSDQGAEWL--HLVDLDGAKAGGPRNLEAIKEILEATDVPVQVGGGIRSLEDVEALLDAGVARVIIG 104 (241)
T ss_pred eEecCCHHHHHHHHHHcCCcEE--EEeeccccccCCcccHHHHHHHHHhCCCCEEeeCCcCCHHHHHHHHHCCCCEEEEe
Confidence 4667799999999999999999 7543343 457888888888888887 6889999999999999988
Q ss_pred cCCCCChHHHHHHHHHhCCccceeeCC
Q psy11600 138 VEPVDNVPQVIRQIKEAGMKVGLAIKP 164 (277)
Q Consensus 138 ~E~~~~~~~~~~~I~~~g~~~g~~i~p 164 (277)
.=|.+++..+.+++++.|-+.-+++.+
T Consensus 105 t~av~~p~~v~~~~~~~g~rivv~lD~ 131 (241)
T COG0106 105 TAAVKNPDLVKELCEEYGDRIVVALDA 131 (241)
T ss_pred cceecCHHHHHHHHHHcCCcEEEEEEc
Confidence 766668888888888887665555543
No 109
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=96.10 E-value=0.23 Score=46.63 Aligned_cols=155 Identities=12% Similarity=0.091 Sum_probs=96.1
Q ss_pred CCCeeeeeeeccCcHH---hHHHHHhcCCCeEEEeccCC--CC---C-------HHHHHHHHhhCCCcccc--------h
Q psy11600 63 PKAFFETHMMVQNPQQ---WIEPMADANVDQYTFHVEPV--DN---V-------PQVIRQIKEAGMKVGQV--------L 119 (277)
Q Consensus 63 ~~~~~d~Hlmv~~p~~---~i~~l~~ag~d~i~~H~e~~--d~---g-------~~~i~~i~~~~~~~~d~--------p 119 (277)
.+.|+-+.++-.++++ +++.+.++|+|.+-+|+-.. +. | .++++++|+.++.|+-+ .
T Consensus 98 ~~~pvi~si~g~~~~~~~~~a~~~~~~gad~iElN~s~~~~~~~~~g~~~~~~~~eiv~~v~~~~~iPv~vKl~p~~~~~ 177 (325)
T cd04739 98 VSIPVIASLNGVSAGGWVDYARQIEEAGADALELNIYALPTDPDISGAEVEQRYLDILRAVKSAVTIPVAVKLSPFFSAL 177 (325)
T ss_pred cCCeEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCCCCcccchHHHHHHHHHHHHHhccCCCEEEEcCCCccCH
Confidence 4788999998877764 46677788999999987531 21 1 46788998887777654 2
Q ss_pred hhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCCccceeeCCCCCHHhHHHHHhhcCceEEEEecCCCCCchhhhhh
Q psy11600 120 QDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIMTVEPGFGGQKFMQDM 199 (277)
Q Consensus 120 ~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~i~p~t~~~~i~~~i~~~d~vl~mav~Pgt~gq~~~~~~ 199 (277)
...++.+.++|+|.|++|-- ... ..+...+. . .....|.+|....+..
T Consensus 178 ~~~a~~l~~~Gadgi~~~nt----~~~-------------~~id~~~~-----------~----~~~~~glSG~~~~~~a 225 (325)
T cd04739 178 AHMAKQLDAAGADGLVLFNR----FYQ-------------PDIDLETL-----------E----VVPNLLLSSPAEIRLP 225 (325)
T ss_pred HHHHHHHHHcCCCeEEEEcC----cCC-------------CCcccccc-----------c----eecCCCcCCccchhHH
Confidence 45778889999999999852 110 00000000 0 0012344554455555
Q ss_pred hhhHHHHHhhCCCccEEEeCCCCc-CcHHHHHHccCCC---CCcccc--cCHHHHHH
Q psy11600 200 MPKVKWLRENYPTLNIEVDGGVGP-NTIDECAKCLTGF---GGQKFM--QDMMPKVK 250 (277)
Q Consensus 200 l~kI~~l~~~~~~~~i~vdGgV~~-~tv~~~~~~gpg~---ggq~F~--~~~~~kI~ 250 (277)
++-+.++++.. ++.|...|||.- +.+.+++.+|++. |+..+. +...++|.
T Consensus 226 l~~v~~v~~~~-~ipIig~GGI~s~~Da~e~l~aGA~~Vqv~ta~~~~gp~~~~~i~ 281 (325)
T cd04739 226 LRWIAILSGRV-KASLAASGGVHDAEDVVKYLLAGADVVMTTSALLRHGPDYIGTLL 281 (325)
T ss_pred HHHHHHHHccc-CCCEEEECCCCCHHHHHHHHHcCCCeeEEehhhhhcCchHHHHHH
Confidence 66666666533 688888999853 3344456688885 555444 44555544
No 110
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=96.05 E-value=0.17 Score=46.75 Aligned_cols=205 Identities=12% Similarity=0.027 Sum_probs=118.9
Q ss_pred HHHHHHHHcCCCEEEE------eccc-cccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEEe
Q psy11600 22 SESQNLLDSGADYLHL------DVMD-GTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTFH 94 (277)
Q Consensus 22 ~~~~~l~~~~~~~~h~------DimD-g~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~H 94 (277)
++-+..+++|.+.+-+ |+.- |.- +..=+|+.|+++|+. .++|+-.-....+ ..+++.+.++|+|+| .
T Consensus 28 ~~a~iae~~g~~~v~~~~~~psd~~~~gg~--~Rm~~p~~I~aIk~~-V~iPVigk~Righ-~~Ea~~L~~~GvDiI--D 101 (293)
T PRK04180 28 EQAKIAEEAGAVAVMALERVPADIRAAGGV--ARMADPKMIEEIMDA-VSIPVMAKARIGH-FVEAQILEALGVDYI--D 101 (293)
T ss_pred HHHHHHHHhChHHHHHccCCCchHhhcCCe--eecCCHHHHHHHHHh-CCCCeEEeehhhH-HHHHHHHHHcCCCEE--e
Confidence 4555667777666222 3222 422 245589999999986 7999988777766 667889999999999 3
Q ss_pred ccCC--CCCHHHHHHHHhhCCCcccch-hhhhHH--HHhcCCCeEEeecCCCC-ChHHHHHHHHHhCCccceeeCCCCCH
Q psy11600 95 VEPV--DNVPQVIRQIKEAGMKVGQVL-QDWIEP--MADANVDQYTFHVEPVD-NVPQVIRQIKEAGMKVGLAIKPKTPV 168 (277)
Q Consensus 95 ~e~~--d~g~~~i~~i~~~~~~~~d~p-~~~i~~--~~~~g~d~it~H~E~~~-~~~~~~~~I~~~g~~~g~~i~p~t~~ 168 (277)
++. .--.+++..+|+....++-+. ..+=+. -.+.|+|+|.-.=|+++ +..+..+.+|.+. .++..-.|..-
T Consensus 102 -~Te~lrpad~~~~~~K~~f~~~fmad~~~l~EAlrai~~GadmI~Ttge~gtg~v~~av~h~r~~~--~~i~~L~gyt~ 178 (293)
T PRK04180 102 -ESEVLTPADEEYHIDKWDFTVPFVCGARNLGEALRRIAEGAAMIRTKGEAGTGNVVEAVRHMRQIN--GEIRRLTSMSE 178 (293)
T ss_pred -ccCCCCchHHHHHHHHHHcCCCEEccCCCHHHHHHHHHCCCCeeeccCCCCCccHHHHHHHHHHHH--HHHHHHhCCCH
Confidence 222 113367777777655555442 222222 36789999998866444 3333333333321 00000001000
Q ss_pred HhHHHHHhhcCceEEEEecCCCCCchhhhhhhhhHHHHHhhCCCccEE--EeCCC-CcCcHHHHHHccCCC---CCcccc
Q psy11600 169 DVIAEYIESADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIE--VDGGV-GPNTIDECAKCLTGF---GGQKFM 242 (277)
Q Consensus 169 ~~i~~~i~~~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~~~~~i~--vdGgV-~~~tv~~~~~~gpg~---ggq~F~ 242 (277)
+....+.+. ..|+ ++.++++++.. .+-+. ..||| +...+..+++.|++. |+..|.
T Consensus 179 ~~~~~~a~~--------~~~~----------~elL~ei~~~~-~iPVV~~AeGGI~TPedaa~vme~GAdgVaVGSaI~k 239 (293)
T PRK04180 179 DELYTAAKE--------LQAP----------YELVKEVAELG-RLPVVNFAAGGIATPADAALMMQLGADGVFVGSGIFK 239 (293)
T ss_pred HHHHhhccc--------cCCC----------HHHHHHHHHhC-CCCEEEEEeCCCCCHHHHHHHHHhCCCEEEEcHHhhc
Confidence 000000000 1222 33455555533 24454 78999 999999999999985 888886
Q ss_pred -cCHHHHHHHHHh
Q psy11600 243 -QDMMPKVKWLRE 254 (277)
Q Consensus 243 -~~~~~kI~~l~~ 254 (277)
++..+..+++++
T Consensus 240 s~dP~~~akafv~ 252 (293)
T PRK04180 240 SGDPEKRARAIVE 252 (293)
T ss_pred CCCHHHHHHHHHH
Confidence 466667776665
No 111
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=96.05 E-value=0.19 Score=44.02 Aligned_cols=153 Identities=21% Similarity=0.270 Sum_probs=90.8
Q ss_pred cCcHHhHHHHHhcCCCeEEEeccCCCCCHHHHHHHHhhCCC-cc---cc-hhhhhHHHHhcCCCeEEeecCCCCChHHHH
Q psy11600 74 QNPQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMK-VG---QV-LQDWIEPMADANVDQYTFHVEPVDNVPQVI 148 (277)
Q Consensus 74 ~~p~~~i~~l~~ag~d~i~~H~e~~d~g~~~i~~i~~~~~~-~~---d~-p~~~i~~~~~~g~d~it~H~E~~~~~~~~~ 148 (277)
.+..+.++.+.+.|...+-+=+.. ....+.|+.+++.... .+ .+ -.+.++...++||+++-=.. ..++++
T Consensus 20 ~~a~~~~~al~~gGi~~iEiT~~t-~~a~~~I~~l~~~~p~~~vGAGTV~~~e~a~~a~~aGA~FivSP~----~~~~v~ 94 (196)
T PF01081_consen 20 EDAVPIAEALIEGGIRAIEITLRT-PNALEAIEALRKEFPDLLVGAGTVLTAEQAEAAIAAGAQFIVSPG----FDPEVI 94 (196)
T ss_dssp GGHHHHHHHHHHTT--EEEEETTS-TTHHHHHHHHHHHHTTSEEEEES--SHHHHHHHHHHT-SEEEESS------HHHH
T ss_pred HHHHHHHHHHHHCCCCEEEEecCC-ccHHHHHHHHHHHCCCCeeEEEeccCHHHHHHHHHcCCCEEECCC----CCHHHH
Confidence 334446788888998877555443 3467778877766432 11 11 46688999999999765432 235777
Q ss_pred HHHHHhCCccceeeCCC-CCHHhHHHHHh-hcCceEEEEecCCCC-CchhhhhhhhhHHHHHhhCCCccEEEeCCCCcCc
Q psy11600 149 RQIKEAGMKVGLAIKPK-TPVDVIAEYIE-SADLVLIMTVEPGFG-GQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNT 225 (277)
Q Consensus 149 ~~I~~~g~~~g~~i~p~-t~~~~i~~~i~-~~d~vl~mav~Pgt~-gq~~~~~~l~kI~~l~~~~~~~~i~vdGgV~~~t 225 (277)
+..++. ++-.-|| .+.+++....+ -+++ +=+-|... |- .+-++.++.-+|++.+..-|||+.++
T Consensus 95 ~~~~~~----~i~~iPG~~TptEi~~A~~~G~~~---vK~FPA~~~GG------~~~ik~l~~p~p~~~~~ptGGV~~~N 161 (196)
T PF01081_consen 95 EYAREY----GIPYIPGVMTPTEIMQALEAGADI---VKLFPAGALGG------PSYIKALRGPFPDLPFMPTGGVNPDN 161 (196)
T ss_dssp HHHHHH----TSEEEEEESSHHHHHHHHHTT-SE---EEETTTTTTTH------HHHHHHHHTTTTT-EEEEBSS--TTT
T ss_pred HHHHHc----CCcccCCcCCHHHHHHHHHCCCCE---EEEecchhcCc------HHHHHHHhccCCCCeEEEcCCCCHHH
Confidence 777775 4555565 23444444332 2333 23456431 10 22356666678899999999999999
Q ss_pred HHHHHHccCCC---CCcccccC
Q psy11600 226 IDECAKCLTGF---GGQKFMQD 244 (277)
Q Consensus 226 v~~~~~~gpg~---ggq~F~~~ 244 (277)
+.+..++|.-. ||+.|.++
T Consensus 162 ~~~~l~ag~~~vg~Gs~L~~~~ 183 (196)
T PF01081_consen 162 LAEYLKAGAVAVGGGSWLFPKD 183 (196)
T ss_dssp HHHHHTSTTBSEEEESGGGSHH
T ss_pred HHHHHhCCCEEEEECchhcCHH
Confidence 99999988775 66666554
No 112
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=95.99 E-value=0.32 Score=42.87 Aligned_cols=160 Identities=14% Similarity=0.108 Sum_probs=91.4
Q ss_pred eeeccCcHHhHHHHHhcCCCeEEEec-cCC-CC---CHHHHHHHHhhCCCcccc-----hhhhhHHHHhcCCCeEEeecC
Q psy11600 70 HMMVQNPQQWIEPMADANVDQYTFHV-EPV-DN---VPQVIRQIKEAGMKVGQV-----LQDWIEPMADANVDQYTFHVE 139 (277)
Q Consensus 70 Hlmv~~p~~~i~~l~~ag~d~i~~H~-e~~-d~---g~~~i~~i~~~~~~~~d~-----p~~~i~~~~~~g~d~it~H~E 139 (277)
+.+..+|.+.++.+.+.|++.+++.- +.. .+ ....++++++.+..|+.+ -.+-++.+.++||+.+.+-..
T Consensus 26 ~~~~~~~~~~a~~~~~~g~~~i~v~dld~~~~g~~~~~~~i~~i~~~~~~pv~~~GGI~~~ed~~~~~~~Ga~~vilg~~ 105 (233)
T PRK00748 26 TVYSDDPVAQAKAWEDQGAKWLHLVDLDGAKAGKPVNLELIEAIVKAVDIPVQVGGGIRSLETVEALLDAGVSRVIIGTA 105 (233)
T ss_pred eEecCCHHHHHHHHHHcCCCEEEEEeCCccccCCcccHHHHHHHHHHCCCCEEEcCCcCCHHHHHHHHHcCCCEEEECch
Confidence 44578999999999999999995542 221 12 456788888887777655 355677788899999988664
Q ss_pred CCCChHHHHHHHHHhCCccceeeCC--------------CCCHHhHHHHHhh--cCceEEEEecCCCCCchhhhhhhhhH
Q psy11600 140 PVDNVPQVIRQIKEAGMKVGLAIKP--------------KTPVDVIAEYIES--ADLVLIMTVEPGFGGQKFMQDMMPKV 203 (277)
Q Consensus 140 ~~~~~~~~~~~I~~~g~~~g~~i~p--------------~t~~~~i~~~i~~--~d~vl~mav~Pgt~gq~~~~~~l~kI 203 (277)
.-+++..+.+..+..+.+.-+++.. ...+.++.+.+.. ++.++++.+++.-..+... ++.+
T Consensus 106 ~l~~~~~l~ei~~~~~~~i~vsid~k~~~v~~~g~~~~~~~~~~e~~~~~~~~g~~~ii~~~~~~~g~~~G~d---~~~i 182 (233)
T PRK00748 106 AVKNPELVKEACKKFPGKIVVGLDARDGKVATDGWLETSGVTAEDLAKRFEDAGVKAIIYTDISRDGTLSGPN---VEAT 182 (233)
T ss_pred HHhCHHHHHHHHHHhCCCceeeeeccCCEEEEccCeecCCCCHHHHHHHHHhcCCCEEEEeeecCcCCcCCCC---HHHH
Confidence 1112223444444433222233332 1122233333433 6777888787743222222 3344
Q ss_pred HHHHhhCCCccEEEeCCCCc-CcHHHHHHcc
Q psy11600 204 KWLRENYPTLNIEVDGGVGP-NTIDECAKCL 233 (277)
Q Consensus 204 ~~l~~~~~~~~i~vdGgV~~-~tv~~~~~~g 233 (277)
+++++.. .+.+..-||+.- +.+.++.+.|
T Consensus 183 ~~l~~~~-~ipvia~GGi~~~~di~~~~~~g 212 (233)
T PRK00748 183 RELAAAV-PIPVIASGGVSSLDDIKALKGLG 212 (233)
T ss_pred HHHHHhC-CCCEEEeCCCCCHHHHHHHHHcC
Confidence 4554433 366777788753 3344444544
No 113
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=95.86 E-value=1 Score=41.26 Aligned_cols=178 Identities=16% Similarity=0.272 Sum_probs=113.0
Q ss_pred HHHHHhcCCCCeeeeeeeccCcHH-----hHHHHHhcCCCeEEEec---cC-CCC-------------------CHHHHH
Q psy11600 55 VKCLRNKIPKAFFETHMMVQNPQQ-----WIEPMADANVDQYTFHV---EP-VDN-------------------VPQVIR 106 (277)
Q Consensus 55 v~~l~~~~~~~~~d~Hlmv~~p~~-----~i~~l~~ag~d~i~~H~---e~-~d~-------------------g~~~i~ 106 (277)
.+++++. .+.-+-.-+|..+|.- .++.+.++|+|.+-+=+ |+ .|| -.++++
T Consensus 8 F~~l~~~-~~~a~i~yit~GdP~~e~s~e~i~~L~~~GaD~iELGvPfSDPvADGP~Iq~A~~rAL~~g~t~~~~lel~~ 86 (265)
T COG0159 8 FAQLKAE-NRGALIPYVTAGDPDLETSLEIIKTLVEAGADILELGVPFSDPVADGPTIQAAHLRALAAGVTLEDTLELVE 86 (265)
T ss_pred HHHHHHh-CCCCeEEEEeCCCCCHHHHHHHHHHHHhCCCCEEEecCCCCCcCccCHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence 3445543 3444666677777653 36777889999884432 22 244 456677
Q ss_pred HHHhh-CCCcc-cc----------hhhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCCccceeeCCCCCHHhHHHH
Q psy11600 107 QIKEA-GMKVG-QV----------LQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEY 174 (277)
Q Consensus 107 ~i~~~-~~~~~-d~----------p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~i~p~t~~~~i~~~ 174 (277)
.+|+. ...|+ .+ .++|++...++|+|.+.+-==|-+...++.+..++.|+..=.=+.|.|+-+.++..
T Consensus 87 ~~r~~~~~~Pivlm~Y~Npi~~~Gie~F~~~~~~~GvdGlivpDLP~ee~~~~~~~~~~~gi~~I~lvaPtt~~~rl~~i 166 (265)
T COG0159 87 EIRAKGVKVPIVLMTYYNPIFNYGIEKFLRRAKEAGVDGLLVPDLPPEESDELLKAAEKHGIDPIFLVAPTTPDERLKKI 166 (265)
T ss_pred HHHhcCCCCCEEEEEeccHHHHhhHHHHHHHHHHcCCCEEEeCCCChHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHH
Confidence 77754 33343 22 58899999999999888742111133456677777777776677888998999999
Q ss_pred Hhhc-CceEEEEecCCCCCchh-hhhhhhhHHHHHhhCCCccEEEeCCC-CcCcHHHHHHccCC
Q psy11600 175 IESA-DLVLIMTVEPGFGGQKF-MQDMMPKVKWLRENYPTLNIEVDGGV-GPNTIDECAKCLTG 235 (277)
Q Consensus 175 i~~~-d~vl~mav~Pgt~gq~~-~~~~l~kI~~l~~~~~~~~i~vdGgV-~~~tv~~~~~~gpg 235 (277)
.+.. +++-.++.++-|+-+.- ...+-+.+++++++. ++-+.+==|| +.+++..+.++ ++
T Consensus 167 ~~~a~GFiY~vs~~GvTG~~~~~~~~~~~~v~~vr~~~-~~Pv~vGFGIs~~e~~~~v~~~-AD 228 (265)
T COG0159 167 AEAASGFIYYVSRMGVTGARNPVSADVKELVKRVRKYT-DVPVLVGFGISSPEQAAQVAEA-AD 228 (265)
T ss_pred HHhCCCcEEEEecccccCCCcccchhHHHHHHHHHHhc-CCCeEEecCcCCHHHHHHHHHh-CC
Confidence 8877 88999998887765443 223556677777654 3333331122 44666666777 55
No 114
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=95.86 E-value=0.19 Score=43.12 Aligned_cols=51 Identities=12% Similarity=0.027 Sum_probs=35.5
Q ss_pred hhhHHHHHhhCCCccEEEeCCCCcCcHHHHHHccCCC---CCcccc-cCHHHHHH
Q psy11600 200 MPKVKWLRENYPTLNIEVDGGVGPNTIDECAKCLTGF---GGQKFM-QDMMPKVK 250 (277)
Q Consensus 200 l~kI~~l~~~~~~~~i~vdGgV~~~tv~~~~~~gpg~---ggq~F~-~~~~~kI~ 250 (277)
++.++++.+..+++.+.+.||++.+++..+.+.|+++ |+..+. ++..+.++
T Consensus 140 ~~~l~~~~~~~~~~pv~a~GGI~~~~~~~~~~~G~~gva~~~~i~~~~dp~~~~~ 194 (196)
T TIGR00693 140 VELLREIAATSIDIPIVAIGGITLENAAEVLAAGADGVAVVSAIMQAADPKAAAK 194 (196)
T ss_pred HHHHHHHHHhcCCCCEEEECCcCHHHHHHHHHcCCCEEEEhHHhhCCCCHHHHHH
Confidence 3445555554556779999999999999999998886 566665 34444433
No 115
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=95.85 E-value=0.26 Score=43.39 Aligned_cols=154 Identities=13% Similarity=0.198 Sum_probs=97.6
Q ss_pred eeccCcHH---hHHHHHhcCCCeEEEeccCCCCCHHHHHHHHhhCCC-cc---cc-hhhhhHHHHhcCCCeEEeecCCCC
Q psy11600 71 MMVQNPQQ---WIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMK-VG---QV-LQDWIEPMADANVDQYTFHVEPVD 142 (277)
Q Consensus 71 lmv~~p~~---~i~~l~~ag~d~i~~H~e~~d~g~~~i~~i~~~~~~-~~---d~-p~~~i~~~~~~g~d~it~H~E~~~ 142 (277)
+-..++++ ..+.+.+.|...+-+-+.. ++..+.|+++++.... .+ .+ -.+-++..+++||+++-=..
T Consensus 14 lr~~~~e~a~~~~~al~~~Gi~~iEit~~t-~~a~~~i~~l~~~~~~~~vGAGTVl~~~~a~~a~~aGA~FivsP~---- 88 (204)
T TIGR01182 14 IRIDDVDDALPLAKALIEGGLRVLEVTLRT-PVALDAIRLLRKEVPDALIGAGTVLNPEQLRQAVDAGAQFIVSPG---- 88 (204)
T ss_pred EecCCHHHHHHHHHHHHHcCCCEEEEeCCC-ccHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCCCEEECCC----
Confidence 34444444 4777888999988555533 4466778888765432 11 11 45568899999999873221
Q ss_pred ChHHHHHHHHHhCCccceeeCCC-CCHHhHHHHHh-hcCceEEEEecCCC--CCchhhhhhhhhHHHHHhhCCCccEEEe
Q psy11600 143 NVPQVIRQIKEAGMKVGLAIKPK-TPVDVIAEYIE-SADLVLIMTVEPGF--GGQKFMQDMMPKVKWLRENYPTLNIEVD 218 (277)
Q Consensus 143 ~~~~~~~~I~~~g~~~g~~i~p~-t~~~~i~~~i~-~~d~vl~mav~Pgt--~gq~~~~~~l~kI~~l~~~~~~~~i~vd 218 (277)
...++++..++. |+-.-|| ...+++...++ -++. +=+-|.. +|. .-++.++.-+|++.+.--
T Consensus 89 ~~~~v~~~~~~~----~i~~iPG~~TptEi~~A~~~Ga~~---vKlFPA~~~GG~-------~yikal~~plp~i~~~pt 154 (204)
T TIGR01182 89 LTPELAKHAQDH----GIPIIPGVATPSEIMLALELGITA---LKLFPAEVSGGV-------KMLKALAGPFPQVRFCPT 154 (204)
T ss_pred CCHHHHHHHHHc----CCcEECCCCCHHHHHHHHHCCCCE---EEECCchhcCCH-------HHHHHHhccCCCCcEEec
Confidence 235677777764 5666677 23444444332 2343 2345532 121 235666767899999999
Q ss_pred CCCCcCcHHHHHHccCCC---CCccccc
Q psy11600 219 GGVGPNTIDECAKCLTGF---GGQKFMQ 243 (277)
Q Consensus 219 GgV~~~tv~~~~~~gpg~---ggq~F~~ 243 (277)
|||+.+|+.+..++|... |++.|..
T Consensus 155 GGV~~~N~~~~l~aGa~~vg~Gs~L~~~ 182 (204)
T TIGR01182 155 GGINLANVRDYLAAPNVACGGGSWLVPK 182 (204)
T ss_pred CCCCHHHHHHHHhCCCEEEEEChhhcCc
Confidence 999999999999988774 6677654
No 116
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=95.75 E-value=0.52 Score=42.51 Aligned_cols=180 Identities=16% Similarity=0.185 Sum_probs=102.6
Q ss_pred EEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEEe-ccCC-CC---CHHHHHHHH
Q psy11600 35 LHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTFH-VEPV-DN---VPQVIRQIK 109 (277)
Q Consensus 35 ~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~H-~e~~-d~---g~~~i~~i~ 109 (277)
.-+|+.||..|.-. +. .+ ..+..+|.+.++.+.+.|+++++++ .+.. .+ ...+++.++
T Consensus 8 p~iD~~~G~~V~~~-----------~~-~~-----~~~~~dp~~~a~~~~~~G~~~l~v~Dl~~~~~~~~~n~~~i~~i~ 70 (254)
T TIGR00735 8 PCLDVRDGRVVKGV-----------QF-LN-----LRDAGDPVELAQRYDEEGADELVFLDITASSEGRTTMIDVVERTA 70 (254)
T ss_pred EEEEeECCEEEEeE-----------ee-cC-----ceECCCHHHHHHHHHHcCCCEEEEEcCCcccccChhhHHHHHHHH
Confidence 45899998877331 11 11 3446799999999999999999766 2211 11 456788888
Q ss_pred hhCCCcccc-----hhhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhC-CccceeeC--CC----------------
Q psy11600 110 EAGMKVGQV-----LQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAG-MKVGLAIK--PK---------------- 165 (277)
Q Consensus 110 ~~~~~~~d~-----p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g-~~~g~~i~--p~---------------- 165 (277)
+.+..|+.. -.+-++.+.++||+.+.+-.+...++.-+.++.+..| .+.-+++. .|
T Consensus 71 ~~~~~pv~~~GGi~s~~d~~~~~~~Ga~~vivgt~~~~~p~~~~~~~~~~~~~~iv~slD~~~g~~~~~~~~~v~i~gw~ 150 (254)
T TIGR00735 71 ETVFIPLTVGGGIKSIEDVDKLLRAGADKVSINTAAVKNPELIYELADRFGSQCIVVAIDAKRVYVNSYCWYEVYIYGGR 150 (254)
T ss_pred HhcCCCEEEECCCCCHHHHHHHHHcCCCEEEEChhHhhChHHHHHHHHHcCCCCEEEEEEeccCCCCCCccEEEEEeCCc
Confidence 877767665 3445566677899999987763333333444445554 22233332 22
Q ss_pred ----CCHHhHHHHHhh--cCceEEEEecCCCCCchhhhhhhhhHHHHHhhCCCccEEEeCCCCc-CcHHHHHHcc-CC
Q psy11600 166 ----TPVDVIAEYIES--ADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGP-NTIDECAKCL-TG 235 (277)
Q Consensus 166 ----t~~~~i~~~i~~--~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~~~~~i~vdGgV~~-~tv~~~~~~g-pg 235 (277)
.....+.+.+.+ +|.+++..+...-..+.+.-++ ++++++. .++.+...||+.- +.+.++.+.| .+
T Consensus 151 ~~~~~~~~~~~~~l~~~G~~~iivt~i~~~g~~~g~~~~~---~~~i~~~-~~ipvia~GGi~s~~di~~~~~~g~~d 224 (254)
T TIGR00735 151 ESTGLDAVEWAKEVEKLGAGEILLTSMDKDGTKSGYDLEL---TKAVSEA-VKIPVIASGGAGKPEHFYEAFTKGKAD 224 (254)
T ss_pred ccCCCCHHHHHHHHHHcCCCEEEEeCcCcccCCCCCCHHH---HHHHHHh-CCCCEEEeCCCCCHHHHHHHHHcCCcc
Confidence 112233333443 4666665555532222333233 3344433 3577888899874 3455555555 44
No 117
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=95.73 E-value=0.67 Score=40.95 Aligned_cols=165 Identities=14% Similarity=0.219 Sum_probs=91.7
Q ss_pred EeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEEe-ccCC-CC---CHHHHHHHHhh
Q psy11600 37 LDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTFH-VEPV-DN---VPQVIRQIKEA 111 (277)
Q Consensus 37 ~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~H-~e~~-d~---g~~~i~~i~~~ 111 (277)
+|++||..|.-..+ + +. ....+|.+.++.+.+.|+++++++ ++.. .+ ...+++.+++.
T Consensus 10 iD~~~g~~V~~~~~--------~----~~-----~~~~dp~~~a~~~~~~g~~~i~i~dl~~~~~~~~~n~~~~~~i~~~ 72 (232)
T TIGR03572 10 LLLKDGRLVKTVQF--------K----DP-----RYIGDPVNAARIYNAKGADELIVLDIDASKRGREPLFELISNLAEE 72 (232)
T ss_pred EEEECCeEEEeecc--------C----CC-----eECCCHHHHHHHHHHcCCCEEEEEeCCCcccCCCCCHHHHHHHHHh
Confidence 89999988742211 1 11 114599999999999999988665 2221 11 56678999888
Q ss_pred CCCcccc---h--hhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCCc---cceeeCCC------------------
Q psy11600 112 GMKVGQV---L--QDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMK---VGLAIKPK------------------ 165 (277)
Q Consensus 112 ~~~~~d~---p--~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~---~g~~i~p~------------------ 165 (277)
+..|+.+ + .+-++.+.+.|++.+.+-.+.-.++..+.+..+..+.+ ..+-++.+
T Consensus 73 ~~~pv~~~ggi~~~~d~~~~~~~G~~~vilg~~~l~~~~~~~~~~~~~~~~~i~vsld~~~~~~~~~~~v~~~~~~~~~~ 152 (232)
T TIGR03572 73 CFMPLTVGGGIRSLEDAKKLLSLGADKVSINTAALENPDLIEEAARRFGSQCVVVSIDVKKELDGSDYKVYSDNGRRATG 152 (232)
T ss_pred CCCCEEEECCCCCHHHHHHHHHcCCCEEEEChhHhcCHHHHHHHHHHcCCceEEEEEEeccCCCCCcEEEEECCCcccCC
Confidence 8776655 2 33445577889999988765222333344445544322 11112221
Q ss_pred CCHHhHHHHHhh--cCceEEEEecCCCCCchhhhhhhhhHHHHHhhCCCccEEEeCCCC
Q psy11600 166 TPVDVIAEYIES--ADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVG 222 (277)
Q Consensus 166 t~~~~i~~~i~~--~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~~~~~i~vdGgV~ 222 (277)
.+...+.+.+.. +|.+++..+.+.-..+.+. ++-++++++.. .+.+..-||++
T Consensus 153 ~~~~~~~~~~~~~G~d~i~i~~i~~~g~~~g~~---~~~~~~i~~~~-~ipvia~GGi~ 207 (232)
T TIGR03572 153 RDPVEWAREAEQLGAGEILLNSIDRDGTMKGYD---LELIKTVSDAV-SIPVIALGGAG 207 (232)
T ss_pred CCHHHHHHHHHHcCCCEEEEeCCCccCCcCCCC---HHHHHHHHhhC-CCCEEEECCCC
Confidence 111222233322 5777777765532222222 33344444432 46688888886
No 118
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=95.73 E-value=0.14 Score=43.71 Aligned_cols=79 Identities=14% Similarity=0.191 Sum_probs=43.1
Q ss_pred EeeeccccCcccHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcC
Q psy11600 8 IGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADAN 87 (277)
Q Consensus 8 ~~~s~~~~d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag 87 (277)
|+|+-++ ..++.+.++.+.+.|++++|+-.=+..--- + .+.++.+++. .. ...+.+++.+. .+...+.|
T Consensus 4 It~~~~~--~~~~~~~l~~~~~~gv~~v~lR~k~~~~~~---~-~~~a~~l~~~-~~-~~~~~liin~~---~~la~~~~ 72 (180)
T PF02581_consen 4 ITDPRLC--GDDFLEQLEAALAAGVDLVQLREKDLSDEE---L-LELARRLAEL-CQ-KYGVPLIINDR---VDLALELG 72 (180)
T ss_dssp EE-STTS--TCHHHHHHHHHHHTT-SEEEEE-SSS-HHH---H-HHHHHHHHHH-HH-HTTGCEEEES----HHHHHHCT
T ss_pred EeCCchh--cchHHHHHHHHHHCCCcEEEEcCCCCCccH---H-HHHHHHHHHH-hh-cceEEEEecCC---HHHHHhcC
Confidence 5565555 556778898989999999999875411110 0 1223333322 10 12456666663 44566789
Q ss_pred CCeEEEeccCCC
Q psy11600 88 VDQYTFHVEPVD 99 (277)
Q Consensus 88 ~d~i~~H~e~~d 99 (277)
+|.+ |+.-.+
T Consensus 73 ~dGv--Hl~~~~ 82 (180)
T PF02581_consen 73 ADGV--HLGQSD 82 (180)
T ss_dssp -SEE--EEBTTS
T ss_pred CCEE--Eecccc
Confidence 9999 665444
No 119
>PRK06256 biotin synthase; Validated
Probab=95.68 E-value=0.31 Score=45.54 Aligned_cols=175 Identities=15% Similarity=0.170 Sum_probs=90.8
Q ss_pred cCcccHHHHHHHHHHcCCCEEEEeccccccccCCC---CCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeE
Q psy11600 15 SDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLT---FGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQY 91 (277)
Q Consensus 15 ~d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~---~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i 91 (277)
.+...+-++++.+.+.|+..++ +..|.+-|+.. .=.+.++.+++. +++.+.+++-.. ..+.++.+.++|++.+
T Consensus 91 ~s~eeI~~~~~~~~~~g~~~~~--l~~~g~~p~~~~~~~~~e~i~~i~~~-~~i~~~~~~g~l-~~e~l~~LkeaG~~~v 166 (336)
T PRK06256 91 LDIEELIEAAKEAIEEGAGTFC--IVASGRGPSGKEVDQVVEAVKAIKEE-TDLEICACLGLL-TEEQAERLKEAGVDRY 166 (336)
T ss_pred CCHHHHHHHHHHHHHCCCCEEE--EEecCCCCCchHHHHHHHHHHHHHhc-CCCcEEecCCcC-CHHHHHHHHHhCCCEE
Confidence 3555666677777778887654 33444434322 223567777765 555554444332 3356889999999999
Q ss_pred EEeccCCCCCHHHHHHHHhhCCCcccchhhhhHHHHhcCCC----eEEeecCCCCChHHHHHHHHHhCCccceeeCCCCC
Q psy11600 92 TFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPMADANVD----QYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTP 167 (277)
Q Consensus 92 ~~H~e~~d~g~~~i~~i~~~~~~~~d~p~~~i~~~~~~g~d----~it~H~E~~~~~~~~~~~I~~~g~~~g~~i~p~t~ 167 (277)
++-+|+ + +.+.+.+++. ...+--.+-++.+.++|.. .+.=+-| +..+..+.+..+
T Consensus 167 ~~~lEt-s--~~~~~~i~~~--~t~~~~i~~i~~a~~~Gi~v~~~~I~GlgE---t~ed~~~~~~~l------------- 225 (336)
T PRK06256 167 NHNLET-S--RSYFPNVVTT--HTYEDRIDTCEMVKAAGIEPCSGGIIGMGE---SLEDRVEHAFFL------------- 225 (336)
T ss_pred ecCCcc-C--HHHHhhcCCC--CCHHHHHHHHHHHHHcCCeeccCeEEeCCC---CHHHHHHHHHHH-------------
Confidence 655665 3 5555555321 0111112233334444432 1111233 444333333322
Q ss_pred HHhHHHHHhhc--CceEEEEec--CCCCCch----hhhhhhhhHHHHHhhCCCccEEEeCCCC
Q psy11600 168 VDVIAEYIESA--DLVLIMTVE--PGFGGQK----FMQDMMPKVKWLRENYPTLNIEVDGGVG 222 (277)
Q Consensus 168 ~~~i~~~i~~~--d~vl~mav~--Pgt~gq~----~~~~~l~kI~~l~~~~~~~~i~vdGgV~ 222 (277)
... +.+.+..+. |||+-+. -..+++..+...|-.+|+..|.+.||=.
T Consensus 226 --------~~l~~~~v~i~~l~P~pGT~l~~~~~~~~~e~l~~ia~~Rl~~p~~~I~~~~gr~ 280 (336)
T PRK06256 226 --------KELDADSIPINFLNPIPGTPLENHPELTPLECLKTIAIFRLINPDKEIRIAGGRE 280 (336)
T ss_pred --------HhCCCCEEeecccccCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCeeEecCchh
Confidence 111 222222222 5665322 1355666666667778999999998863
No 120
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=95.67 E-value=0.24 Score=46.47 Aligned_cols=166 Identities=13% Similarity=0.152 Sum_probs=99.3
Q ss_pred HHHHHHHhcC-CCCeeeeeeeccC-------cHHhHHHHHhcC--CCeEEEeccCCC--C---------CHHHHHHHHhh
Q psy11600 53 PVVKCLRNKI-PKAFFETHMMVQN-------PQQWIEPMADAN--VDQYTFHVEPVD--N---------VPQVIRQIKEA 111 (277)
Q Consensus 53 ~~v~~l~~~~-~~~~~d~Hlmv~~-------p~~~i~~l~~ag--~d~i~~H~e~~d--~---------g~~~i~~i~~~ 111 (277)
.+++.+++.. .+.|+-+.+.-.+ .+++.+.+.+++ +|++.+-+-.-. + -.++++++|+.
T Consensus 116 ~~~~~l~~~~~~~~plivsi~g~~~~~~~~~~~d~~~~~~~~~~~ad~ielN~scP~~~g~~~~~~~~~~~~iv~av~~~ 195 (327)
T cd04738 116 AVAKRLKKRRPRGGPLGVNIGKNKDTPLEDAVEDYVIGVRKLGPYADYLVVNVSSPNTPGLRDLQGKEALRELLTAVKEE 195 (327)
T ss_pred HHHHHHHHhccCCCeEEEEEeCCCCCcccccHHHHHHHHHHHHhhCCEEEEECCCCCCCccccccCHHHHHHHHHHHHHH
Confidence 4567777643 3688888886655 466766665544 898865442111 1 34778888887
Q ss_pred CC-----Ccccc----------hhhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCCccceeeCCCCCHHhHHHHHh
Q psy11600 112 GM-----KVGQV----------LQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIE 176 (277)
Q Consensus 112 ~~-----~~~d~----------p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~i~p~t~~~~i~~~i~ 176 (277)
+. .|+.+ ....++.+.++|+|.|++|-- .... . ... ++..
T Consensus 196 ~~~~~~~~Pv~vKl~~~~~~~~~~~ia~~l~~aGad~I~~~n~---~~~~-~----------~~~-~~~~---------- 250 (327)
T cd04738 196 RNKLGKKVPLLVKIAPDLSDEELEDIADVALEHGVDGIIATNT---TISR-P----------GLL-RSPL---------- 250 (327)
T ss_pred HhhcccCCCeEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEECC---cccc-c----------ccc-cccc----------
Confidence 64 55543 234567788899999999853 2110 0 000 0000
Q ss_pred hcCceEEEEecCCCCCchhhhhhhhhHHHHHhhCC-CccEEEeCCC-CcCcHHHHHHccCCC---CCcccc--cCHHHHH
Q psy11600 177 SADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYP-TLNIEVDGGV-GPNTIDECAKCLTGF---GGQKFM--QDMMPKV 249 (277)
Q Consensus 177 ~~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~~-~~~i~vdGgV-~~~tv~~~~~~gpg~---ggq~F~--~~~~~kI 249 (277)
-...-|++|....+..++.+.++++..+ ++.+...||| +.+.+.+++.+|++. |+..+. +....+|
T Consensus 251 -------~~~~gG~sG~~~~~~~l~~v~~l~~~~~~~ipIi~~GGI~t~~da~e~l~aGAd~V~vg~~~~~~gP~~~~~i 323 (327)
T cd04738 251 -------ANETGGLSGAPLKERSTEVLRELYKLTGGKIPIIGVGGISSGEDAYEKIRAGASLVQLYTGLVYEGPGLVKRI 323 (327)
T ss_pred -------cCCCCccCChhhhHHHHHHHHHHHHHhCCCCcEEEECCCCCHHHHHHHHHcCCCHHhccHHHHhhCcHHHHHH
Confidence 0001144554444556777888877654 6889999999 566777788888885 444432 5555555
Q ss_pred H
Q psy11600 250 K 250 (277)
Q Consensus 250 ~ 250 (277)
.
T Consensus 324 ~ 324 (327)
T cd04738 324 K 324 (327)
T ss_pred H
Confidence 4
No 121
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=95.65 E-value=0.16 Score=46.85 Aligned_cols=135 Identities=12% Similarity=0.067 Sum_probs=86.1
Q ss_pred HHHHHHHHhcCCCCeeeeeeeccCcHHhHHHH-HhcCCCeEEEe--ccC-C--C----------CCHHHHHHHHhhCC-C
Q psy11600 52 HPVVKCLRNKIPKAFFETHMMVQNPQQWIEPM-ADANVDQYTFH--VEP-V--D----------NVPQVIRQIKEAGM-K 114 (277)
Q Consensus 52 ~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l-~~ag~d~i~~H--~e~-~--d----------~g~~~i~~i~~~~~-~ 114 (277)
-.+|+.+|+..|+..+-+--++.--.+.++++ ..+|..+-|-- .|. + | +-...++.+|+... .
T Consensus 110 ~~~V~~~~~~~~~~~I~~TRKT~Pg~R~l~k~Av~~GGg~~HR~gLsd~ilikdnHi~~~g~~~~i~~av~~~r~~~~~~ 189 (277)
T TIGR01334 110 HKMVTLAKKISPMAVVACTRKAIPLTRPLAVKAVLAAGGVIHRIGLSETLLVFANHRTFLNDNFDWGGAIGRLKQTAPER 189 (277)
T ss_pred HHHHHHHHhcCCCCEEEecCCCCCChhHHHHHHHHhCCCcCeecCCchhheehHHHHHHhCCcccHHHHHHHHHHhCCCC
Confidence 46677888766888888888887777776655 45687877221 222 0 0 13456677776531 2
Q ss_pred --cccc-hhhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCCccceeeCCCCCHHhHHHHHhhcCceEEEEecCCCC
Q psy11600 115 --VGQV-LQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIMTVEPGFG 191 (277)
Q Consensus 115 --~~d~-p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~i~p~t~~~~i~~~i~~~d~vl~mav~Pgt~ 191 (277)
.+++ ..+.+.+.+++|+|.|-+|-= +++++.+.
T Consensus 190 kIeVEv~tleea~ea~~~GaDiI~lDn~---~~e~l~~~----------------------------------------- 225 (277)
T TIGR01334 190 KITVEADTIEQALTVLQASPDILQLDKF---TPQQLHHL----------------------------------------- 225 (277)
T ss_pred CEEEECCCHHHHHHHHHcCcCEEEECCC---CHHHHHHH-----------------------------------------
Confidence 2333 566666677777777777632 33332222
Q ss_pred CchhhhhhhhhHHHHHhhCCCccEEEeCCCCcCcHHHHHHccCCC--CCccc
Q psy11600 192 GQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKCLTGF--GGQKF 241 (277)
Q Consensus 192 gq~~~~~~l~kI~~l~~~~~~~~i~vdGgV~~~tv~~~~~~gpg~--ggq~F 241 (277)
++.++...+++.+++.||||++|+.++.+.|+++ -|..+
T Consensus 226 -----------v~~l~~~~~~~~leasGGI~~~ni~~ya~~GvD~is~gal~ 266 (277)
T TIGR01334 226 -----------HERLKFFDHIPTLAAAGGINPENIADYIEAGIDLFITSAPY 266 (277)
T ss_pred -----------HHHHhccCCCEEEEEECCCCHHHHHHHHhcCCCEEEeCcce
Confidence 3333334566779999999999999999999997 34444
No 122
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=95.64 E-value=0.44 Score=42.20 Aligned_cols=171 Identities=15% Similarity=0.151 Sum_probs=102.6
Q ss_pred HHhHHHHHhcCCCeEEEeccCCCCC----HHHHHHHHhhCCC--cccchhhhhHHHHhcCCCeEEeecCCCCChHHHHHH
Q psy11600 77 QQWIEPMADANVDQYTFHVEPVDNV----PQVIRQIKEAGMK--VGQVLQDWIEPMADANVDQYTFHVEPVDNVPQVIRQ 150 (277)
Q Consensus 77 ~~~i~~l~~ag~d~i~~H~e~~d~g----~~~i~~i~~~~~~--~~d~p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~ 150 (277)
.++++...+.|++.+ ++-.-+.. -...+.++..+.. .-.+..++++.-.+.|||.|-+-.+ +.. ....
T Consensus 24 ~~~ve~al~~Gv~~v--QlR~K~~~~~~~~~~a~~~~~lc~~~~v~liINd~~dlA~~~~AdGVHlGq~---D~~-~~~a 97 (211)
T COG0352 24 LEWVEAALKGGVTAV--QLREKDLSDEEYLALAEKLRALCQKYGVPLIINDRVDLALAVGADGVHLGQD---DMP-LAEA 97 (211)
T ss_pred HHHHHHHHhCCCeEE--EEecCCCChHHHHHHHHHHHHHHHHhCCeEEecCcHHHHHhCCCCEEEcCCc---ccc-hHHH
Confidence 577888889999988 65543332 2333444444432 1222456667777889998665544 322 2222
Q ss_pred HHHhCCccceeeCCCCCHHhHHHHHhh-cCceEEEEecCCCCCchhhhhhhhhHHHHHhhCCCccEEEeCCCCcCcHHHH
Q psy11600 151 IKEAGMKVGLAIKPKTPVDVIAEYIES-ADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDEC 229 (277)
Q Consensus 151 I~~~g~~~g~~i~p~t~~~~i~~~i~~-~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~~~~~i~vdGgV~~~tv~~~ 229 (277)
.+..+-+.-+|+... +++........ +|++.+=.+-|...-+.--+.-++.++++++... +-+...||++.++++.+
T Consensus 98 r~~~~~~~iIG~S~h-~~eea~~A~~~g~DYv~~GpifpT~tK~~~~~~G~~~l~~~~~~~~-iP~vAIGGi~~~nv~~v 175 (211)
T COG0352 98 RELLGPGLIIGLSTH-DLEEALEAEELGADYVGLGPIFPTSTKPDAPPLGLEGLREIRELVN-IPVVAIGGINLENVPEV 175 (211)
T ss_pred HHhcCCCCEEEeecC-CHHHHHHHHhcCCCEEEECCcCCCCCCCCCCccCHHHHHHHHHhCC-CCEEEEcCCCHHHHHHH
Confidence 233333344555555 66666666655 8887655555532211123334555666655443 55888999999999999
Q ss_pred HHccCCC---CCcccc-cCHHHHHHHHHhh
Q psy11600 230 AKCLTGF---GGQKFM-QDMMPKVKWLREN 255 (277)
Q Consensus 230 ~~~gpg~---ggq~F~-~~~~~kI~~l~~~ 255 (277)
.++|+++ -+..|. ++.....+++++.
T Consensus 176 ~~~Ga~gVAvvsai~~a~d~~~a~~~~~~~ 205 (211)
T COG0352 176 LEAGADGVAVVSAITSAADPAAAAKALRNA 205 (211)
T ss_pred HHhCCCeEEehhHhhcCCCHHHHHHHHHHH
Confidence 9999996 445664 4666777777654
No 123
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=95.60 E-value=0.068 Score=50.74 Aligned_cols=233 Identities=12% Similarity=0.110 Sum_probs=126.9
Q ss_pred eccccCcccHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHH--H----HhcCCCCeeeeeee--cc---CcHHh
Q psy11600 11 SILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKC--L----RNKIPKAFFETHMM--VQ---NPQQW 79 (277)
Q Consensus 11 s~~~~d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~--l----~~~~~~~~~d~Hlm--v~---~p~~~ 79 (277)
+++.+|+.+.+|.++.||+. .... |.--+...+.+.|..-.++. + .+.--....+.+|. +. ++.+.
T Consensus 86 ~~~~an~~r~qea~rvlee~-~k~~--~~~~~~~~~~~ry~~y~le~~~~~~~~~~~~~~~l~~~~LylIT~~~~~ll~~ 162 (347)
T PRK02615 86 QVVSANAARVQEALRVLEEY-GKLY--DPELAAAAKQIRYELYTLESELLNASLGKKRRQRLKDARLYLITSPSENLLEV 162 (347)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HccC--CHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHhhccCCEEEEECCchhHHHH
Confidence 78899999999999999998 3432 33223344566664433221 1 00001122443333 22 23345
Q ss_pred HHHHHhcCCCeEEEeccCCCCCH----HHHHHHHhhCCC--cccchhhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHH
Q psy11600 80 IEPMADANVDQYTFHVEPVDNVP----QVIRQIKEAGMK--VGQVLQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKE 153 (277)
Q Consensus 80 i~~l~~ag~d~i~~H~e~~d~g~----~~i~~i~~~~~~--~~d~p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~ 153 (277)
++...++|+.+| |+-.-+... ...+.+++.+.. ...+.-++++.-.+.|+|.| |+. +.+. .....++
T Consensus 163 l~~al~~Gv~~V--QLR~K~~~~~~~~~~a~~L~~l~~~~~~~lIIND~vdlAl~~~aDGV--HLg-q~dl--~~~~aR~ 235 (347)
T PRK02615 163 VEAALKGGVTLV--QYRDKTADDRQRLEEAKKLKELCHRYGALFIVNDRVDIALAVDADGV--HLG-QEDL--PLAVARQ 235 (347)
T ss_pred HHHHHHcCCCEE--EECCCCCCHHHHHHHHHHHHHHHHHhCCeEEEeChHHHHHHcCCCEE--EeC-hhhc--CHHHHHH
Confidence 777888999998 665433211 222333333321 11223456777788899865 554 1122 1222333
Q ss_pred -hCCccceeeCCCCCHHhHHHHH-hhcCceEEEEecCCCCCchhhhhhhhhHHHHHhhCCCccEEEeCCCCcCcHHHHHH
Q psy11600 154 -AGMKVGLAIKPKTPVDVIAEYI-ESADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAK 231 (277)
Q Consensus 154 -~g~~~g~~i~p~t~~~~i~~~i-~~~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~~~~~i~vdGgV~~~tv~~~~~ 231 (277)
.|...-+|....+ ++.+.... ..+|++.+=.+-|..+-...-+--++.++++.+.. .+-+...|||+..|+.++.+
T Consensus 236 llg~~~iIG~S~Hs-~~e~~~A~~~GaDYI~lGPvf~T~tKp~~~~~Gle~l~~~~~~~-~iPv~AiGGI~~~ni~~l~~ 313 (347)
T PRK02615 236 LLGPEKIIGRSTTN-PEEMAKAIAEGADYIGVGPVFPTPTKPGKAPAGLEYLKYAAKEA-PIPWFAIGGIDKSNIPEVLQ 313 (347)
T ss_pred hcCCCCEEEEecCC-HHHHHHHHHcCCCEEEECCCcCCCCCCCCCCCCHHHHHHHHHhC-CCCEEEECCCCHHHHHHHHH
Confidence 4545566777665 55555544 36788653223221110000111244455554433 36678889999999999999
Q ss_pred ccCCC---CCcccc-cCHHHHHHHHHhh
Q psy11600 232 CLTGF---GGQKFM-QDMMPKVKWLREN 255 (277)
Q Consensus 232 ~gpg~---ggq~F~-~~~~~kI~~l~~~ 255 (277)
+|+++ ++..+. ++.....+++.+.
T Consensus 314 ~Ga~gVAvisaI~~a~dp~~~~~~l~~~ 341 (347)
T PRK02615 314 AGAKRVAVVRAIMGAEDPKQATQELLKQ 341 (347)
T ss_pred cCCcEEEEeHHHhCCCCHHHHHHHHHHH
Confidence 99886 555554 4667777776653
No 124
>PF00215 OMPdecase: Orotidine 5'-phosphate decarboxylase / HUMPS family; InterPro: IPR001754 Orotidine 5'-phosphate decarboxylase (OMPdecase) [, ] catalyses the last step in the de novo biosynthesis of pyrimidines, the decarboxylation of OMP into UMP. In higher eukaryotes OMPdecase is part, with orotate phosphoribosyltransferase, of a bifunctional enzyme, while the prokaryotic and fungal OMPdecases are monofunctional protein. Some parts of the sequence of OMPdecase are well conserved across species. The best conserved region is located in the N-terminal half of OMPdecases and is centred around a lysine residue which is essential for the catalytic function of the enzyme. This entry also includes enzymes such as 3-hexulose-6-phosphate synthase 4.1.2.43 from EC and 3-keto-L-gulonate-6-phosphate decarboxylase 4.1.1.85 from EC.; GO: 0004590 orotidine-5'-phosphate decarboxylase activity, 0006207 'de novo' pyrimidine base biosynthetic process; PDB: 2YYT_D 2YYU_B 3RU6_D 2CZE_B 2CZ5_B 2CZF_A 2CZD_A 3R89_A 2ZCG_A 2ZA1_A ....
Probab=95.57 E-value=0.024 Score=50.27 Aligned_cols=90 Identities=12% Similarity=0.167 Sum_probs=67.1
Q ss_pred ccccCcccHHHHHHHHHHcCCCEEEEeccc--cccccCCCCC----HHHHHHHHhcCCCCeeeeeeeccCcHHhHHHH--
Q psy11600 12 ILNSDLSNLHSESQNLLDSGADYLHLDVMD--GTFVPNLTFG----HPVVKCLRNKIPKAFFETHMMVQNPQQWIEPM-- 83 (277)
Q Consensus 12 ~~~~d~~~l~~~~~~l~~~~~~~~h~DimD--g~fvp~~~~g----~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l-- 83 (277)
++++|..++++.++.+++. .+ ++|+.. ..|. ..+| ++.++.+|+. .+++-++++..|-.++....
T Consensus 4 ~vALD~~~~~~a~~i~~~~-~~--~v~~iKvG~~l~--~~~G~~~l~~~i~~l~~~--~~~I~~D~K~~Dig~t~~~~~~ 76 (226)
T PF00215_consen 4 QVALDPTDLEEALRIADEL-GD--YVDIIKVGTPLF--LAYGLEALPEIIEELKER--GKPIFLDLKLGDIGNTVARYAE 76 (226)
T ss_dssp EEEE-SSSHHHHHHHHHHH-GG--GSSEEEEEHHHH--HHHCHHHHHHHHHHHHHT--TSEEEEEEEE-SSHHHHHHHHH
T ss_pred EEEeCCCCHHHHHHHHHHh-cC--cceEEEEChHHH--hcCChhhHHHHHHHHHHh--cCCEeeeeeecccchHHHHHHH
Confidence 5688999999999998887 34 488888 4555 5689 9999999986 38999999999977764444
Q ss_pred -----HhcCCCeEEEeccCCCCCHHHHHHHHhh
Q psy11600 84 -----ADANVDQYTFHVEPVDNVPQVIRQIKEA 111 (277)
Q Consensus 84 -----~~ag~d~i~~H~e~~d~g~~~i~~i~~~ 111 (277)
.++|+|++|+|.-. |...|+...+.
T Consensus 77 ~~~~~~~~gaD~vTv~~~~---G~~tl~~~~~~ 106 (226)
T PF00215_consen 77 AGFAAFELGADAVTVHPFA---GDDTLEAAVKA 106 (226)
T ss_dssp SCHHHHTTTESEEEEEGTT---HHHHHHHHHHH
T ss_pred HhhhhhcCCCcEEEEeccC---CHHHHHHHHHH
Confidence 47899999999643 45566555443
No 125
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=95.42 E-value=1.7 Score=39.44 Aligned_cols=115 Identities=13% Similarity=0.141 Sum_probs=74.7
Q ss_pred ccHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEEeccC
Q psy11600 18 SNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTFHVEP 97 (277)
Q Consensus 18 ~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~H~e~ 97 (277)
.+..+..+..++.|++.+=+ .-|..| +.=+.+.++.+|+. .++|+...=.+.+|. +++...++|||.+++....
T Consensus 70 ~~~~~~A~~~~~~GA~aisv-lte~~~---f~g~~~~l~~v~~~-v~iPvl~kdfi~~~~-qi~~a~~~GAD~VlLi~~~ 143 (260)
T PRK00278 70 FDPVEIAKAYEAGGAACLSV-LTDERF---FQGSLEYLRAARAA-VSLPVLRKDFIIDPY-QIYEARAAGADAILLIVAA 143 (260)
T ss_pred CCHHHHHHHHHhCCCeEEEE-eccccc---CCCCHHHHHHHHHh-cCCCEEeeeecCCHH-HHHHHHHcCCCEEEEEecc
Confidence 35677777888899999632 122233 12357889999986 799999877787888 7999999999999554443
Q ss_pred CCC--CHHHHHHHHhhCCC-cccc--hhhhhHHHHhcCCCeEEeecC
Q psy11600 98 VDN--VPQVIRQIKEAGMK-VGQV--LQDWIEPMADANVDQYTFHVE 139 (277)
Q Consensus 98 ~d~--g~~~i~~i~~~~~~-~~d~--p~~~i~~~~~~g~d~it~H~E 139 (277)
.+. -..+++..+..+.. ..++ .++. +...++|+|+|.+|..
T Consensus 144 l~~~~l~~li~~a~~lGl~~lvevh~~~E~-~~A~~~gadiIgin~r 189 (260)
T PRK00278 144 LDDEQLKELLDYAHSLGLDVLVEVHDEEEL-ERALKLGAPLIGINNR 189 (260)
T ss_pred CCHHHHHHHHHHHHHcCCeEEEEeCCHHHH-HHHHHcCCCEEEECCC
Confidence 221 22334444444433 2233 3322 4466889999999853
No 126
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=95.41 E-value=0.33 Score=45.64 Aligned_cols=90 Identities=12% Similarity=0.129 Sum_probs=62.1
Q ss_pred ceEeeeccccCcccHHHHHHHHHHcCCCEEEEeccccccccCCC------CCHHHHHHHHhcCCCCeeeeeeec--cCcH
Q psy11600 6 CMIGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLT------FGHPVVKCLRNKIPKAFFETHMMV--QNPQ 77 (277)
Q Consensus 6 ~~~~~s~~~~d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~------~g~~~v~~l~~~~~~~~~d~Hlmv--~~p~ 77 (277)
.-+..||...+...+.+..+.+++.|+|++++-+-=-+.-+... .-.+.++++|+. +++|+-+-+-- .+..
T Consensus 102 ~pvi~sI~g~~~~e~~~~a~~~~~agad~ielN~scpp~~~~~~g~~~~~~~~eil~~v~~~-~~iPV~vKl~p~~~~~~ 180 (334)
T PRK07565 102 IPVIASLNGSSAGGWVDYARQIEQAGADALELNIYYLPTDPDISGAEVEQRYLDILRAVKSA-VSIPVAVKLSPYFSNLA 180 (334)
T ss_pred CcEEEEeccCCHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCCCccccHHHHHHHHHHHHHhc-cCCcEEEEeCCCchhHH
Confidence 45778888878888888888999999999888662100001100 013667889875 78888887532 2445
Q ss_pred HhHHHHHhcCCCeEEEecc
Q psy11600 78 QWIEPMADANVDQYTFHVE 96 (277)
Q Consensus 78 ~~i~~l~~ag~d~i~~H~e 96 (277)
+..+.+.++|+|.+++|--
T Consensus 181 ~~a~~l~~~G~dgI~~~n~ 199 (334)
T PRK07565 181 NMAKRLDAAGADGLVLFNR 199 (334)
T ss_pred HHHHHHHHcCCCeEEEECC
Confidence 6678889999999999843
No 127
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=95.39 E-value=0.36 Score=42.88 Aligned_cols=54 Identities=19% Similarity=0.121 Sum_probs=39.2
Q ss_pred hhHHHHHhhCCCccEEEeCCCCcCcHHHHHHccCCC---CCcccc-cCHHHHHHHHHhh
Q psy11600 201 PKVKWLRENYPTLNIEVDGGVGPNTIDECAKCLTGF---GGQKFM-QDMMPKVKWLREN 255 (277)
Q Consensus 201 ~kI~~l~~~~~~~~i~vdGgV~~~tv~~~~~~gpg~---ggq~F~-~~~~~kI~~l~~~ 255 (277)
+.++++.+. .++-+...|||+.+++.++.++|+++ -+..|. ++..+.++++++.
T Consensus 154 ~~l~~~~~~-~~iPvvAIGGI~~~n~~~~~~~GA~giAvisai~~~~dp~~a~~~~~~~ 211 (221)
T PRK06512 154 SLAEWWAEM-IEIPCIVQAGSDLASAVEVAETGAEFVALERAVFDAHDPPLAVAQANAL 211 (221)
T ss_pred HHHHHHHHh-CCCCEEEEeCCCHHHHHHHHHhCCCEEEEhHHhhCCCCHHHHHHHHHHH
Confidence 345455443 35778899999999999999999996 344454 5777777777764
No 128
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=95.36 E-value=0.18 Score=46.37 Aligned_cols=83 Identities=14% Similarity=0.200 Sum_probs=56.7
Q ss_pred eEeeeccccCcccHHHHHHHHHHcC--CCEEEEeccccccccCC-----------CCCHHHHHHHHhcCCCCeeeeeeec
Q psy11600 7 MIGPSILNSDLSNLHSESQNLLDSG--ADYLHLDVMDGTFVPNL-----------TFGHPVVKCLRNKIPKAFFETHMMV 73 (277)
Q Consensus 7 ~~~~s~~~~d~~~l~~~~~~l~~~~--~~~~h~DimDg~fvp~~-----------~~g~~~v~~l~~~~~~~~~d~Hlmv 73 (277)
-+..||...|...+.+..+.+++.+ +|. +|+- --+||. .+--++++++|+. .++|+.+=+-.
T Consensus 92 pl~~qi~g~~~~~~~~~a~~~~~~~~~~d~--ielN--~~cP~~~~~g~~l~~~~~~~~eiv~~vr~~-~~~pv~vKi~~ 166 (300)
T TIGR01037 92 PLIASVYGSSVEEFAEVAEKLEKAPPYVDA--YELN--LSCPHVKGGGIAIGQDPELSADVVKAVKDK-TDVPVFAKLSP 166 (300)
T ss_pred cEEEEeecCCHHHHHHHHHHHHhccCccCE--EEEE--CCCCCCCCCccccccCHHHHHHHHHHHHHh-cCCCEEEECCC
Confidence 4788999999999999999988753 666 3332 223332 1224678888875 57777766531
Q ss_pred --cCcHHhHHHHHhcCCCeEEEe
Q psy11600 74 --QNPQQWIEPMADANVDQYTFH 94 (277)
Q Consensus 74 --~~p~~~i~~l~~ag~d~i~~H 94 (277)
.+..+..+.+.++|+|.+++|
T Consensus 167 ~~~~~~~~a~~l~~~G~d~i~v~ 189 (300)
T TIGR01037 167 NVTDITEIAKAAEEAGADGLTLI 189 (300)
T ss_pred ChhhHHHHHHHHHHcCCCEEEEE
Confidence 133455777889999999987
No 129
>PRK09121 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional
Probab=95.32 E-value=0.33 Score=45.88 Aligned_cols=20 Identities=30% Similarity=0.552 Sum_probs=17.7
Q ss_pred cHHHHHHHHHHcCCCEEEEe
Q psy11600 19 NLHSESQNLLDSGADYLHLD 38 (277)
Q Consensus 19 ~l~~~~~~l~~~~~~~~h~D 38 (277)
-+.+|++.|.++|++++.+|
T Consensus 157 al~~Ei~~L~~aG~~~IQiD 176 (339)
T PRK09121 157 ILNQEAKELEAAGVDIIQFD 176 (339)
T ss_pred HHHHHHHHHHHCCCCEEEec
Confidence 35688999999999999999
No 130
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=95.29 E-value=0.2 Score=42.74 Aligned_cols=32 Identities=38% Similarity=0.457 Sum_probs=25.8
Q ss_pred HHHhhCCCccEEEeCCCCcCcHHHHHHccCCC
Q psy11600 205 WLRENYPTLNIEVDGGVGPNTIDECAKCLTGF 236 (277)
Q Consensus 205 ~l~~~~~~~~i~vdGgV~~~tv~~~~~~gpg~ 236 (277)
.++...+++.+++.||+|++|+.++.+.|.|+
T Consensus 120 ~l~~~~~~v~ie~SGGI~~~ni~~ya~~gvD~ 151 (169)
T PF01729_consen 120 ELRELNPRVKIEASGGITLENIAEYAKTGVDV 151 (169)
T ss_dssp HHHHHTTTSEEEEESSSSTTTHHHHHHTT-SE
T ss_pred HHhhcCCcEEEEEECCCCHHHHHHHHhcCCCE
Confidence 33444566889999999999999999999886
No 131
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=95.22 E-value=0.38 Score=42.28 Aligned_cols=100 Identities=13% Similarity=0.134 Sum_probs=71.8
Q ss_pred HHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEEeccCCCC
Q psy11600 21 HSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTFHVEPVDN 100 (277)
Q Consensus 21 ~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~H~e~~d~ 100 (277)
.++++...++|++++|. |+ +.++.++..+. .+.++-.. +.+|.+ +....+.|+|++-+ +.....
T Consensus 73 ~~~~~~a~~aGA~fivs--------p~--~~~~v~~~~~~--~~~~~~~G--~~t~~E-~~~A~~~Gad~vk~-Fpa~~~ 136 (206)
T PRK09140 73 PEQVDRLADAGGRLIVT--------PN--TDPEVIRRAVA--LGMVVMPG--VATPTE-AFAALRAGAQALKL-FPASQL 136 (206)
T ss_pred HHHHHHHHHcCCCEEEC--------CC--CCHHHHHHHHH--CCCcEEcc--cCCHHH-HHHHHHcCCCEEEE-CCCCCC
Confidence 35777888899999776 55 56677777664 35555555 667755 56667889999976 333445
Q ss_pred CHHHHHHHHhhCC--Ccccc----hhhhhHHHHhcCCCeEEe
Q psy11600 101 VPQVIRQIKEAGM--KVGQV----LQDWIEPMADANVDQYTF 136 (277)
Q Consensus 101 g~~~i~~i~~~~~--~~~d~----p~~~i~~~~~~g~d~it~ 136 (277)
|+..+++++.... .|+-. ..+-++++.++|++.+.+
T Consensus 137 G~~~l~~l~~~~~~~ipvvaiGGI~~~n~~~~~~aGa~~vav 178 (206)
T PRK09140 137 GPAGIKALRAVLPPDVPVFAVGGVTPENLAPYLAAGAAGFGL 178 (206)
T ss_pred CHHHHHHHHhhcCCCCeEEEECCCCHHHHHHHHHCCCeEEEE
Confidence 8999999988763 44432 567888999999999884
No 132
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=95.22 E-value=2.5 Score=38.87 Aligned_cols=211 Identities=14% Similarity=0.150 Sum_probs=112.6
Q ss_pred ceEeeeccccCcccHHHHHHHHHHcCCCEEEE-----ecccc-----------ccccCCCC---CH-HHHHHHHhcC--C
Q psy11600 6 CMIGPSILNSDLSNLHSESQNLLDSGADYLHL-----DVMDG-----------TFVPNLTF---GH-PVVKCLRNKI--P 63 (277)
Q Consensus 6 ~~~~~s~~~~d~~~l~~~~~~l~~~~~~~~h~-----DimDg-----------~fvp~~~~---g~-~~v~~l~~~~--~ 63 (277)
+.++|+.+ ..-.+.++.+.+.|+..+=+ +--.| .++..+++ |. .+++.+++.. -
T Consensus 14 i~~aag~~----~~~~~~~~~~~~~G~g~iv~kt~~~~~~~gn~~pr~~~~~~~~~n~~gl~~~g~~~~~~~~~~~~~~~ 89 (300)
T TIGR01037 14 LILASGIM----GSGVESLRRIDRSGAGAVVTKSIGLEPRPGYRNPTIVETPCGMLNAIGLQNPGVEAFLEELKPVREEF 89 (300)
T ss_pred CEeCCcCC----CCCHHHHHHHHHcCCcEEEeCccccccccCCCCCeEEecccHHhhhccCCCcCHHHHHHHHHHHhccC
Confidence 34455454 22344566666778877444 11112 23333333 33 3455554321 1
Q ss_pred CCeeeeeeeccCcHHh---HHHHHhc--CCCeEEEeccCC--CC-----------CHHHHHHHHhhCCCcccc-------
Q psy11600 64 KAFFETHMMVQNPQQW---IEPMADA--NVDQYTFHVEPV--DN-----------VPQVIRQIKEAGMKVGQV------- 118 (277)
Q Consensus 64 ~~~~d~Hlmv~~p~~~---i~~l~~a--g~d~i~~H~e~~--d~-----------g~~~i~~i~~~~~~~~d~------- 118 (277)
+.|+-+.++-.+++++ ++.+.++ ++|.+-+-+-.- .+ --++++++|+....|+.+
T Consensus 90 ~~pl~~qi~g~~~~~~~~~a~~~~~~~~~~d~ielN~~cP~~~~~g~~l~~~~~~~~eiv~~vr~~~~~pv~vKi~~~~~ 169 (300)
T TIGR01037 90 PTPLIASVYGSSVEEFAEVAEKLEKAPPYVDAYELNLSCPHVKGGGIAIGQDPELSADVVKAVKDKTDVPVFAKLSPNVT 169 (300)
T ss_pred CCcEEEEeecCCHHHHHHHHHHHHhccCccCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhcCCCEEEECCCChh
Confidence 3588999999998887 4445554 388885543321 11 356788888876555543
Q ss_pred -hhhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCCccceeeCCCCCHHhHHHHHhhcCceEEEE-ecCCCCCchhh
Q psy11600 119 -LQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIMT-VEPGFGGQKFM 196 (277)
Q Consensus 119 -p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~i~p~t~~~~i~~~i~~~d~vl~ma-v~Pgt~gq~~~ 196 (277)
...+++.+.++|+|.+++|-- +... ...+..+.+. +. ..-|.+|....
T Consensus 170 ~~~~~a~~l~~~G~d~i~v~nt----~~~~-----------~~~~~~~~~~---------------~~~~~gg~sg~~~~ 219 (300)
T TIGR01037 170 DITEIAKAAEEAGADGLTLINT----LRGM-----------KIDIKTGKPI---------------LANKTGGLSGPAIK 219 (300)
T ss_pred hHHHHHHHHHHcCCCEEEEEcc----CCcc-----------ccccccCcee---------------eCCCCccccchhhh
Confidence 244667788999999999842 1100 0000111110 00 00122232222
Q ss_pred hhhhhhHHHHHhhCCCccEEEeCCC-CcCcHHHHHHccCCC---CCccc-ccCHHHHHHH
Q psy11600 197 QDMMPKVKWLRENYPTLNIEVDGGV-GPNTIDECAKCLTGF---GGQKF-MQDMMPKVKW 251 (277)
Q Consensus 197 ~~~l~kI~~l~~~~~~~~i~vdGgV-~~~tv~~~~~~gpg~---ggq~F-~~~~~~kI~~ 251 (277)
+-.++.+.++++.. ++.+...||| +.+.+.+++.+|++. |...+ .+....++++
T Consensus 220 ~~~l~~v~~i~~~~-~ipvi~~GGI~s~~da~~~l~~GAd~V~igr~~l~~p~~~~~i~~ 278 (300)
T TIGR01037 220 PIALRMVYDVYKMV-DIPIIGVGGITSFEDALEFLMAGASAVQVGTAVYYRGFAFKKIIE 278 (300)
T ss_pred HHHHHHHHHHHhcC-CCCEEEECCCCCHHHHHHHHHcCCCceeecHHHhcCchHHHHHHH
Confidence 22344556665543 4778889999 567788888889885 44433 3566666553
No 133
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=95.14 E-value=2.1 Score=38.98 Aligned_cols=69 Identities=16% Similarity=0.224 Sum_probs=54.7
Q ss_pred HHHHHHHHHcCCCEEEEe-ccccccccCCCCCHHHHH-------HHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEE
Q psy11600 21 HSESQNLLDSGADYLHLD-VMDGTFVPNLTFGHPVVK-------CLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYT 92 (277)
Q Consensus 21 ~~~~~~l~~~~~~~~h~D-imDg~fvp~~~~g~~~v~-------~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~ 92 (277)
-++.+.|++.|+|.+=+- -.|.+|.+. .+|+++. ++|+. .++|+=+.++-.++..-+.....+|+|++-
T Consensus 32 ~~ea~~l~~~GvDgiiveN~~D~Py~~~--~~~etvaaM~~i~~~v~~~-~~~p~GVnvL~nd~~aalaiA~A~ga~FIR 108 (254)
T PF03437_consen 32 VREAEALEEGGVDGIIVENMGDVPYPKR--VGPETVAAMARIAREVRRE-VSVPVGVNVLRNDPKAALAIAAATGADFIR 108 (254)
T ss_pred HHHHHHHHHCCCCEEEEecCCCCCccCC--CCHHHHHHHHHHHHHHHHh-CCCCEEeeeecCCCHHHHHHHHHhCCCEEE
Confidence 367788999999997664 356888765 6777776 45665 488999999999999888888888999984
No 134
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=95.09 E-value=0.35 Score=44.57 Aligned_cols=128 Identities=9% Similarity=0.061 Sum_probs=93.0
Q ss_pred eeccccCcccHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeee---eeee------------cc
Q psy11600 10 PSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFE---THMM------------VQ 74 (277)
Q Consensus 10 ~s~~~~d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d---~Hlm------------v~ 74 (277)
|=.+..|-..-.+.+++..+.|.+++.+|--+-+|-.|+...-++++..++. +++++ .|+- ..
T Consensus 76 pv~lHlDH~~~~e~i~~Al~~G~tsVm~d~s~~~~~eni~~t~~v~~~a~~~--gv~veaE~ghlG~~d~~~~~~g~s~t 153 (281)
T PRK06806 76 PVAVHFDHGMTFEKIKEALEIGFTSVMFDGSHLPLEENIQKTKEIVELAKQY--GATVEAEIGRVGGSEDGSEDIEMLLT 153 (281)
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCEEEEcCCCCCHHHHHHHHHHHHHHHHHc--CCeEEEEeeeECCccCCcccccceeC
Confidence 4456677776667888888899999999988888877877777766666553 55555 4553 34
Q ss_pred CcHHhHHHHHhcCCCeEEEeccCC--------CCCHHHHHHHHhhCCCcccc------hhhhhHHHHhcCCCeEEeecC
Q psy11600 75 NPQQWIEPMADANVDQYTFHVEPV--------DNVPQVIRQIKEAGMKVGQV------LQDWIEPMADANVDQYTFHVE 139 (277)
Q Consensus 75 ~p~~~i~~l~~ag~d~i~~H~e~~--------d~g~~~i~~i~~~~~~~~d~------p~~~i~~~~~~g~d~it~H~E 139 (277)
+|++-.+...+.|+|++.+=+-.. .-+.+.++++++....|+-+ |.+-+..+.++|++.|.+-.+
T Consensus 154 ~~eea~~f~~~tg~DyLAvaiG~~hg~~~~~~~l~~~~L~~i~~~~~iPlV~hG~SGI~~e~~~~~i~~G~~kinv~T~ 232 (281)
T PRK06806 154 STTEAKRFAEETDVDALAVAIGNAHGMYNGDPNLRFDRLQEINDVVHIPLVLHGGSGISPEDFKKCIQHGIRKINVATA 232 (281)
T ss_pred CHHHHHHHHHhhCCCEEEEccCCCCCCCCCCCccCHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHcCCcEEEEhHH
Confidence 666655544567999998822211 12889999999988766533 788899999999999998654
No 135
>PF00697 PRAI: N-(5'phosphoribosyl)anthranilate (PRA) isomerase; InterPro: IPR001240 Indole-3-glycerol phosphate synthase (IGPS) (see IPR001468 from INTERPRO) catalyzes the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyzes N-(5-phosphoribosyl)anthranilate isomerase (PRAI) activity, the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (GATase) N-terminal domain (see IPR000991 from INTERPRO). Phosphoribosylanthranilate isomerase (PRAI) is monomeric and labile in most mesophilic microorganisms, but dimeric and stable in the hyperthermophile Thermotoga maritima (tPRAI) []. The comparison to the known 2.0 A structure of PRAI from Escherichia coli (ePRAI) shows that tPRAI has the complete TIM- or (beta alp ha)8-barrel fold, whereas helix alpha5 in ePRAI is replaced by a loop. The subunits of tPRAI associate via the N-terminal faces of their central beta-barrels. Two long, symmetry-related loops that protrude reciprocally into cavities of the other subunit provide for multiple hydrophobic interactions. Moreover, the side chains of the N-terminal methionines and the C-terminal leucines of both subunits are immobilized in a hydrophobic cluster, and the number of salt bridges is increased in tPRAI. These features appear to be mainly responsible for the high thermostability of tPRAI []. ; GO: 0004640 phosphoribosylanthranilate isomerase activity, 0006568 tryptophan metabolic process; PDB: 1V5X_A 1PII_A 1JCM_P 2KZH_A 1LBM_A 1DL3_A 1NSJ_A.
Probab=95.08 E-value=0.39 Score=41.72 Aligned_cols=150 Identities=20% Similarity=0.278 Sum_probs=86.7
Q ss_pred HhHHHHHhcCCCeEEEeccCCC---CCHHHHHHHHhhCCC-cc----cc-hhhhhHHHHhcCCCeEEeecCCCCChHHHH
Q psy11600 78 QWIEPMADANVDQYTFHVEPVD---NVPQVIRQIKEAGMK-VG----QV-LQDWIEPMADANVDQYTFHVEPVDNVPQVI 148 (277)
Q Consensus 78 ~~i~~l~~ag~d~i~~H~e~~d---~g~~~i~~i~~~~~~-~~----d~-p~~~i~~~~~~g~d~it~H~E~~~~~~~~~ 148 (277)
+.+..+.++|+|++-|-+.... -.+...+.+.+.... .+ +. +++.++.+.+++.|++=+|-. ......
T Consensus 10 ~da~~~~~~g~d~~Gfi~~~~S~R~v~~~~a~~l~~~~~~~~VgVf~~~~~~~I~~~~~~~~ld~vQLHG~---e~~e~~ 86 (197)
T PF00697_consen 10 EDARLAAELGADYLGFIFYPKSPRYVSPDQARELVSAVPPKIVGVFVNQSPEEILEIVEELGLDVVQLHGD---ESPEYI 86 (197)
T ss_dssp HHHHHHHHHTSSEEEEE--TTCTTB--HHHHHHHHCCSSSSEEEEESSS-HHHHHHHHHHCTESEEEE-SG---G-HHHH
T ss_pred HHHHHHHHcCCCEEeeecCCCCCCccCHHHHHHHHHhcCCCEEEEEcCCCHHHHHHHHHHcCCCEEEECCC---CCHHHH
Confidence 4577888999999988876532 166667777655442 11 11 667778888899999999976 445555
Q ss_pred HHHHHhCCccceeeCCCCCHHhHHHH--HhhcCceEEEEecCCCCCchhhhhhhhhHHHHHhhCCCccEEEeCCCCcCcH
Q psy11600 149 RQIKEAGMKVGLAIKPKTPVDVIAEY--IESADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTI 226 (277)
Q Consensus 149 ~~I~~~g~~~g~~i~p~t~~~~i~~~--i~~~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~~~~~i~vdGgV~~~tv 226 (277)
+.++ .+.+.-.++.+.......... -...|.+++= -..|..|+.|.-+.+.++.... ....+.+.||++.+++
T Consensus 87 ~~l~-~~~~vi~~~~v~~~~~~~~~~~~~~~~d~~LlD-~~~GgtG~~~dw~~~~~~~~~~---~~~p~iLAGGl~p~NV 161 (197)
T PF00697_consen 87 KLLR-AGLPVIKAIHVDKDIDLLDYLERYESVDYFLLD-SGSGGTGKTFDWSLLKKIVESY---SPKPVILAGGLNPENV 161 (197)
T ss_dssp HHHH-TTSEEEEEEEESSCHSCCHHCHCSTT-SEEEEE-SSSTSSSS---GGGGCCCHHT----GTSTEEEESS--TTTH
T ss_pred HHhh-cCceEEEEEEeCCccchHHHHHhcccccEEeEc-cCCCcCCcccCHHHhhhhhhhc---ccCcEEEEcCCChHHH
Confidence 6565 234444444444433222221 2223666644 3455567888888887776532 2567899999999999
Q ss_pred HHHHH-ccCC
Q psy11600 227 DECAK-CLTG 235 (277)
Q Consensus 227 ~~~~~-~gpg 235 (277)
.++.+ .+|.
T Consensus 162 ~~ai~~~~p~ 171 (197)
T PF00697_consen 162 REAIRQVRPY 171 (197)
T ss_dssp HHHHHHC--S
T ss_pred HHHHHhcCce
Confidence 98877 5554
No 136
>PRK09240 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=95.02 E-value=0.66 Score=44.32 Aligned_cols=80 Identities=11% Similarity=0.144 Sum_probs=51.3
Q ss_pred cCcccHHHHHHHHHHcCCCEEEEeccccccc--cCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEE
Q psy11600 15 SDLSNLHSESQNLLDSGADYLHLDVMDGTFV--PNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYT 92 (277)
Q Consensus 15 ~d~~~l~~~~~~l~~~~~~~~h~DimDg~fv--p~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~ 92 (277)
.+...+.++++.+.+.|+..+|+ .-|.-. ..+.+=.+.++.+++.+|.+.+ +....+ .+.++.+.++|++.++
T Consensus 104 ls~eEI~~~a~~~~~~Gv~~i~l--vgGe~p~~~~~e~l~~~i~~Ik~~~p~i~i--~~g~lt-~e~l~~Lk~aGv~r~~ 178 (371)
T PRK09240 104 LDEEEIEREMAAIKKLGFEHILL--LTGEHEAKVGVDYIRRALPIAREYFSSVSI--EVQPLS-EEEYAELVELGLDGVT 178 (371)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEE--eeCCCCCCCCHHHHHHHHHHHHHhCCCcee--ccCCCC-HHHHHHHHHcCCCEEE
Confidence 35556677778888889999776 324432 2222334667778776665433 333333 3457899999999997
Q ss_pred EeccCCC
Q psy11600 93 FHVEPVD 99 (277)
Q Consensus 93 ~H~e~~d 99 (277)
+-.|+.+
T Consensus 179 i~lET~~ 185 (371)
T PRK09240 179 VYQETYN 185 (371)
T ss_pred EEEecCC
Confidence 7777754
No 137
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=94.96 E-value=0.73 Score=40.77 Aligned_cols=95 Identities=11% Similarity=0.102 Sum_probs=53.9
Q ss_pred HHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEEeccCCCCCHHHHHHHHhhCCC-ccc---c-hhhhhHHHH
Q psy11600 53 PVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMK-VGQ---V-LQDWIEPMA 127 (277)
Q Consensus 53 ~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~H~e~~d~g~~~i~~i~~~~~~-~~d---~-p~~~i~~~~ 127 (277)
++++.+.+. +=+++.-+.-..+-.+.++.+.+.|++.+-+=+.. +.+.+.|+.+|+.... .+- + -..-++...
T Consensus 7 ~~~~~l~~~-~~iaV~r~~~~~~a~~i~~al~~~Gi~~iEitl~~-~~~~~~I~~l~~~~p~~~IGAGTVl~~~~a~~a~ 84 (212)
T PRK05718 7 SIEEILRAG-PVVPVIVINKLEDAVPLAKALVAGGLPVLEVTLRT-PAALEAIRLIAKEVPEALIGAGTVLNPEQLAQAI 84 (212)
T ss_pred HHHHHHHHC-CEEEEEEcCCHHHHHHHHHHHHHcCCCEEEEecCC-ccHHHHHHHHHHHCCCCEEEEeeccCHHHHHHHH
Confidence 345556542 33344333333333345777888899988555432 4578888888875432 111 1 335678888
Q ss_pred hcCCCeEEeecCCCCChHHHHHHHHH
Q psy11600 128 DANVDQYTFHVEPVDNVPQVIRQIKE 153 (277)
Q Consensus 128 ~~g~d~it~H~E~~~~~~~~~~~I~~ 153 (277)
++||++++-..= + +.+++..++
T Consensus 85 ~aGA~FivsP~~---~-~~vi~~a~~ 106 (212)
T PRK05718 85 EAGAQFIVSPGL---T-PPLLKAAQE 106 (212)
T ss_pred HcCCCEEECCCC---C-HHHHHHHHH
Confidence 888888776432 2 255554444
No 138
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=94.93 E-value=0.23 Score=46.78 Aligned_cols=126 Identities=14% Similarity=0.159 Sum_probs=86.9
Q ss_pred eEeeeccccCcccHHHHHHHHHHcCCCEEEEeccccccc-------------cCCCCCHHHHHHHHhcCCCCeeeeeeec
Q psy11600 7 MIGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFV-------------PNLTFGHPVVKCLRNKIPKAFFETHMMV 73 (277)
Q Consensus 7 ~~~~s~~~~d~~~l~~~~~~l~~~~~~~~h~DimDg~fv-------------p~~~~g~~~v~~l~~~~~~~~~d~Hlmv 73 (277)
-+..+|...|...+.+..+.+++.|.|. +||-=|--. .+..|-.++++++|+. .++|+++-+-+
T Consensus 66 p~~vQl~g~~p~~~~~aA~~~~~~g~d~--IdlN~gCP~~~v~~~~~Gs~L~~~p~~~~eiv~avr~~-v~~pVsvKiR~ 142 (333)
T PRK11815 66 PVALQLGGSDPADLAEAAKLAEDWGYDE--INLNVGCPSDRVQNGRFGACLMAEPELVADCVKAMKDA-VSIPVTVKHRI 142 (333)
T ss_pred cEEEEEeCCCHHHHHHHHHHHHhcCCCE--EEEcCCCCHHHccCCCeeeHHhcCHHHHHHHHHHHHHH-cCCceEEEEEe
Confidence 4788999999999999999999999888 665433222 2333335788999886 57899986643
Q ss_pred c--C------cHHhHHHHHhcCCCeEEEeccC--CCC------------CHHHHHHHHhhC-CCcc----cc--hhhhhH
Q psy11600 74 Q--N------PQQWIEPMADANVDQYTFHVEP--VDN------------VPQVIRQIKEAG-MKVG----QV--LQDWIE 124 (277)
Q Consensus 74 ~--~------p~~~i~~l~~ag~d~i~~H~e~--~d~------------g~~~i~~i~~~~-~~~~----d~--p~~~i~ 124 (277)
. + ..+.++.+.++|++.+++|.-. ..+ ..+.++.+++.. ..|+ ++ |++..+
T Consensus 143 g~~~~~t~~~~~~~~~~l~~aG~d~i~vh~Rt~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~iPVI~nGgI~s~eda~~ 222 (333)
T PRK11815 143 GIDDQDSYEFLCDFVDTVAEAGCDTFIVHARKAWLKGLSPKENREIPPLDYDRVYRLKRDFPHLTIEINGGIKTLEEAKE 222 (333)
T ss_pred eeCCCcCHHHHHHHHHHHHHhCCCEEEEcCCchhhcCCCccccccCCCcCHHHHHHHHHhCCCCeEEEECCcCCHHHHHH
Confidence 2 1 2455788889999999999532 111 256788888764 5544 22 666666
Q ss_pred HHHhcCCCeEEee
Q psy11600 125 PMADANVDQYTFH 137 (277)
Q Consensus 125 ~~~~~g~d~it~H 137 (277)
.+. |||.|.+=
T Consensus 223 ~l~--~aDgVmIG 233 (333)
T PRK11815 223 HLQ--HVDGVMIG 233 (333)
T ss_pred HHh--cCCEEEEc
Confidence 554 58877763
No 139
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=94.87 E-value=0.55 Score=41.67 Aligned_cols=107 Identities=14% Similarity=0.198 Sum_probs=70.7
Q ss_pred HHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCC--Ceeeeeee-------------ccCcHHhHHHHHhc
Q psy11600 22 SESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPK--AFFETHMM-------------VQNPQQWIEPMADA 86 (277)
Q Consensus 22 ~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~--~~~d~Hlm-------------v~~p~~~i~~l~~a 86 (277)
++++.+.+.|++.+|+.-.. .+ .|+.++++++.++. +.+.+... -.++.+.++.+.+.
T Consensus 89 ~~~~~~~~~Ga~~v~iGs~~---~~----~~~~~~~i~~~~g~~~i~~sid~~~~~v~~~g~~~~~~~~~~~~~~~~~~~ 161 (241)
T PRK13585 89 EDAASLLDLGVDRVILGTAA---VE----NPEIVRELSEEFGSERVMVSLDAKDGEVVIKGWTEKTGYTPVEAAKRFEEL 161 (241)
T ss_pred HHHHHHHHcCCCEEEEChHH---hh----ChHHHHHHHHHhCCCcEEEEEEeeCCEEEECCCcccCCCCHHHHHHHHHHc
Confidence 55666777899998884333 11 35678888877643 22333322 12788889999999
Q ss_pred CCCeEEEeccCCCC-----CHHHHHHHHhhCCCcccc------hhhhhHHHHhcCCCeEEe
Q psy11600 87 NVDQYTFHVEPVDN-----VPQVIRQIKEAGMKVGQV------LQDWIEPMADANVDQYTF 136 (277)
Q Consensus 87 g~d~i~~H~e~~d~-----g~~~i~~i~~~~~~~~d~------p~~~i~~~~~~g~d~it~ 136 (277)
|++.+++|--..++ ....++++++....|+-. +++ +..+.++|++.+.+
T Consensus 162 G~~~i~~~~~~~~g~~~g~~~~~i~~i~~~~~iPvia~GGI~~~~d-i~~~~~~Ga~gv~v 221 (241)
T PRK13585 162 GAGSILFTNVDVEGLLEGVNTEPVKELVDSVDIPVIASGGVTTLDD-LRALKEAGAAGVVV 221 (241)
T ss_pred CCCEEEEEeecCCCCcCCCCHHHHHHHHHhCCCCEEEeCCCCCHHH-HHHHHHcCCCEEEE
Confidence 99999887422222 457789998887666544 444 44467788887776
No 140
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=94.80 E-value=0.36 Score=45.47 Aligned_cols=109 Identities=15% Similarity=0.201 Sum_probs=71.8
Q ss_pred HHHHHHHHHcCC--CEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEEeccCC
Q psy11600 21 HSESQNLLDSGA--DYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTFHVEPV 98 (277)
Q Consensus 21 ~~~~~~l~~~~~--~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~H~e~~ 98 (277)
.+++..|.++|+ |.+-+|+-+|+-- .-.++++++|+.+|+.++-+- -|.++ +....+.++|+|.+.+++-..
T Consensus 99 ~~~~~~Lv~ag~~~d~i~iD~a~gh~~----~~~e~I~~ir~~~p~~~vi~g-~V~t~-e~a~~l~~aGad~i~vg~~~G 172 (326)
T PRK05458 99 YDFVDQLAAEGLTPEYITIDIAHGHSD----SVINMIQHIKKHLPETFVIAG-NVGTP-EAVRELENAGADATKVGIGPG 172 (326)
T ss_pred HHHHHHHHhcCCCCCEEEEECCCCchH----HHHHHHHHHHhhCCCCeEEEE-ecCCH-HHHHHHHHcCcCEEEECCCCC
Confidence 467777788855 9999999997643 334679999999888776552 12344 456788899999987663211
Q ss_pred --------C--C----CHHHHHHHHhhCCCcccc------hhhhhHHHHhcCCCeEEe
Q psy11600 99 --------D--N----VPQVIRQIKEAGMKVGQV------LQDWIEPMADANVDQYTF 136 (277)
Q Consensus 99 --------d--~----g~~~i~~i~~~~~~~~d~------p~~~i~~~~~~g~d~it~ 136 (277)
. + +...++++++....|+-. |.+..+.++- ||+.+.+
T Consensus 173 ~~~~t~~~~g~~~~~w~l~ai~~~~~~~~ipVIAdGGI~~~~Di~KaLa~-GA~aV~v 229 (326)
T PRK05458 173 KVCITKIKTGFGTGGWQLAALRWCAKAARKPIIADGGIRTHGDIAKSIRF-GATMVMI 229 (326)
T ss_pred cccccccccCCCCCccHHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHh-CCCEEEe
Confidence 1 1 233477777655444322 6776766655 8887665
No 141
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=94.75 E-value=0.82 Score=42.89 Aligned_cols=129 Identities=12% Similarity=0.099 Sum_probs=81.2
Q ss_pred ceEeeeccccCcccHHHHHHHHHHcCCCEEEEeccccccccCCCCC-------HHHHHHHHhcCCCCeeeeeeec--cCc
Q psy11600 6 CMIGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFG-------HPVVKCLRNKIPKAFFETHMMV--QNP 76 (277)
Q Consensus 6 ~~~~~s~~~~d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g-------~~~v~~l~~~~~~~~~d~Hlmv--~~p 76 (277)
.-+..||...+...+.+..+.+++.|+|++-+.+-=-+.-|+. +| .+.++++|+. .++|+-+=|=. .+.
T Consensus 100 ~pvi~si~g~~~~~~~~~a~~~~~~gad~iElN~s~~~~~~~~-~g~~~~~~~~eiv~~v~~~-~~iPv~vKl~p~~~~~ 177 (325)
T cd04739 100 IPVIASLNGVSAGGWVDYARQIEEAGADALELNIYALPTDPDI-SGAEVEQRYLDILRAVKSA-VTIPVAVKLSPFFSAL 177 (325)
T ss_pred CeEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCCCCc-ccchHHHHHHHHHHHHHhc-cCCCEEEEcCCCccCH
Confidence 4577899888888888999999999999865544210011222 22 3678899875 67888776542 245
Q ss_pred HHhHHHHHhcCCCeEEEeccC----CC---------C----------CHHHHHHHHhhCCCcccc------hhhhhHHHH
Q psy11600 77 QQWIEPMADANVDQYTFHVEP----VD---------N----------VPQVIRQIKEAGMKVGQV------LQDWIEPMA 127 (277)
Q Consensus 77 ~~~i~~l~~ag~d~i~~H~e~----~d---------~----------g~~~i~~i~~~~~~~~d~------p~~~i~~~~ 127 (277)
.+.++.+.++|+|.+++|--. .| + ..++++++++..+.|+-. +++.++.+.
T Consensus 178 ~~~a~~l~~~Gadgi~~~nt~~~~~id~~~~~~~~~~glSG~~~~~~al~~v~~v~~~~~ipIig~GGI~s~~Da~e~l~ 257 (325)
T cd04739 178 AHMAKQLDAAGADGLVLFNRFYQPDIDLETLEVVPNLLLSSPAEIRLPLRWIAILSGRVKASLAASGGVHDAEDVVKYLL 257 (325)
T ss_pred HHHHHHHHHcCCCeEEEEcCcCCCCccccccceecCCCcCCccchhHHHHHHHHHHcccCCCEEEECCCCCHHHHHHHHH
Confidence 567888899999999988432 11 0 123455555544444321 566666554
Q ss_pred hcCCCeEEee
Q psy11600 128 DANVDQYTFH 137 (277)
Q Consensus 128 ~~g~d~it~H 137 (277)
+||+.|-+=
T Consensus 258 -aGA~~Vqv~ 266 (325)
T cd04739 258 -AGADVVMTT 266 (325)
T ss_pred -cCCCeeEEe
Confidence 777776663
No 142
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=94.70 E-value=0.18 Score=46.71 Aligned_cols=28 Identities=25% Similarity=0.376 Sum_probs=24.8
Q ss_pred hCCCccEEEeCCCCcCcHHHHHHccCCC
Q psy11600 209 NYPTLNIEVDGGVGPNTIDECAKCLTGF 236 (277)
Q Consensus 209 ~~~~~~i~vdGgV~~~tv~~~~~~gpg~ 236 (277)
..+++.+++-||||++|+.++.+.|.|+
T Consensus 243 ~~~~v~ieaSGGI~~~ni~~yA~tGvD~ 270 (289)
T PRK07896 243 RAPTVLLESSGGLTLDTAAAYAETGVDY 270 (289)
T ss_pred cCCCEEEEEECCCCHHHHHHHHhcCCCE
Confidence 3456779999999999999999999997
No 143
>PRK08508 biotin synthase; Provisional
Probab=94.62 E-value=2.9 Score=38.28 Aligned_cols=79 Identities=15% Similarity=0.232 Sum_probs=47.1
Q ss_pred CcccHHHHHHHHHHcCCCEEEEeccccccccCCCC--CHHHHHHHHhcCCCCeeeeeeeccC-cHHhHHHHHhcCCCeEE
Q psy11600 16 DLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTF--GHPVVKCLRNKIPKAFFETHMMVQN-PQQWIEPMADANVDQYT 92 (277)
Q Consensus 16 d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~--g~~~v~~l~~~~~~~~~d~Hlmv~~-p~~~i~~l~~ag~d~i~ 92 (277)
+...+-++++...+.|+..+|+ +-.|...+.-.+ =.++++.+|+.+|++.+ |.-... -.+.++.|.++|+|.++
T Consensus 41 s~eeI~~~a~~a~~~g~~~~~l-v~sg~~~~~~~~e~~~ei~~~ik~~~p~l~i--~~s~G~~~~e~l~~Lk~aGld~~~ 117 (279)
T PRK08508 41 DIEQIVQEAKMAKANGALGFCL-VTSGRGLDDKKLEYVAEAAKAVKKEVPGLHL--IACNGTASVEQLKELKKAGIFSYN 117 (279)
T ss_pred CHHHHHHHHHHHHHCCCCEEEE-EeccCCCCcccHHHHHHHHHHHHhhCCCcEE--EecCCCCCHHHHHHHHHcCCCEEc
Confidence 4455556666666789999887 444443333212 23666778776555433 222222 35578999999999995
Q ss_pred EeccC
Q psy11600 93 FHVEP 97 (277)
Q Consensus 93 ~H~e~ 97 (277)
.-.|+
T Consensus 118 ~~lEt 122 (279)
T PRK08508 118 HNLET 122 (279)
T ss_pred ccccc
Confidence 43443
No 144
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=94.59 E-value=1.1 Score=42.46 Aligned_cols=73 Identities=18% Similarity=0.394 Sum_probs=49.2
Q ss_pred cCcccHHHHHHHHHHcCCCEEEEeccccccccCCCC--CHHHHHHHHhcCCCCeeeeeeec------------cCcHHhH
Q psy11600 15 SDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTF--GHPVVKCLRNKIPKAFFETHMMV------------QNPQQWI 80 (277)
Q Consensus 15 ~d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~--g~~~v~~l~~~~~~~~~d~Hlmv------------~~p~~~i 80 (277)
.+...+.++++...+.|+..+++ ..|.. |+..+ =-++++.+|+.+|++. +|-++ ....+.+
T Consensus 79 l~~eeI~~~a~~~~~~G~~~v~l--~~G~~-p~~~~~~~~e~i~~Ik~~~p~i~--i~~~~~~ei~~~~~~~g~~~~e~l 153 (351)
T TIGR03700 79 MSLEEIVARVKEAYAPGATEVHI--VGGLH-PNLPFEWYLDMIRTLKEAYPDLH--VKAFTAVEIHHFSKISGLPTEEVL 153 (351)
T ss_pred CCHHHHHHHHHHHHHCCCcEEEE--ecCCC-CCCCHHHHHHHHHHHHHHCCCce--EEeCCHHHHHHHHHHcCCCHHHHH
Confidence 46667777888888889998554 56644 44332 2468888888766644 44332 1245569
Q ss_pred HHHHhcCCCeEE
Q psy11600 81 EPMADANVDQYT 92 (277)
Q Consensus 81 ~~l~~ag~d~i~ 92 (277)
++|.++|++.++
T Consensus 154 ~~LkeAGld~~~ 165 (351)
T TIGR03700 154 DELKEAGLDSMP 165 (351)
T ss_pred HHHHHcCCCcCC
Confidence 999999999883
No 145
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=94.58 E-value=0.65 Score=41.05 Aligned_cols=181 Identities=13% Similarity=0.146 Sum_probs=107.3
Q ss_pred HHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEEeccCCCCCHHHHHHHHhhCCCc-c---cc-hhhhhHHHH
Q psy11600 53 PVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKV-G---QV-LQDWIEPMA 127 (277)
Q Consensus 53 ~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~H~e~~d~g~~~i~~i~~~~~~~-~---d~-p~~~i~~~~ 127 (277)
.+...+++ .+=+++..+.-+++-....+.+.+.|.+.+-+-+.. +...+.|+.+++.-... + .+ -.+.+++.+
T Consensus 5 ~~~~~l~~-~~vI~Vlr~~~~e~a~~~a~Ali~gGi~~IEITl~s-p~a~e~I~~l~~~~p~~lIGAGTVL~~~q~~~a~ 82 (211)
T COG0800 5 KILSKLKA-QPVVPVIRGDDVEEALPLAKALIEGGIPAIEITLRT-PAALEAIRALAKEFPEALIGAGTVLNPEQARQAI 82 (211)
T ss_pred HHHHHHHH-CCeeEEEEeCCHHHHHHHHHHHHHcCCCeEEEecCC-CCHHHHHHHHHHhCcccEEccccccCHHHHHHHH
Confidence 34555665 466677666666666667899999999988555543 33556677776654421 1 11 456788999
Q ss_pred hcCCCeE-EeecCCCCChHHHHHHHHHhCCccceeeCCCC-CHHhHHHHHhhcCceEEEEecCC--CCCchhhhhhhhhH
Q psy11600 128 DANVDQY-TFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKT-PVDVIAEYIESADLVLIMTVEPG--FGGQKFMQDMMPKV 203 (277)
Q Consensus 128 ~~g~d~i-t~H~E~~~~~~~~~~~I~~~g~~~g~~i~p~t-~~~~i~~~i~~~d~vl~mav~Pg--t~gq~~~~~~l~kI 203 (277)
++|++++ |-+.+ .++++..+. .++-+.||. +..++...++. +.-. +=+-|+ ++|. .-+
T Consensus 83 ~aGa~fiVsP~~~-----~ev~~~a~~----~~ip~~PG~~TptEi~~Ale~-G~~~-lK~FPa~~~Gg~-------~~~ 144 (211)
T COG0800 83 AAGAQFIVSPGLN-----PEVAKAANR----YGIPYIPGVATPTEIMAALEL-GASA-LKFFPAEVVGGP-------AML 144 (211)
T ss_pred HcCCCEEECCCCC-----HHHHHHHHh----CCCcccCCCCCHHHHHHHHHc-Chhh-eeecCccccCcH-------HHH
Confidence 9999965 44432 456666655 467788883 22333333221 1110 112232 1121 112
Q ss_pred HHHHhhCCCccEEEeCCCCcCcHHHHHHccCCC---CCccccc-----CHHHHHHHHH
Q psy11600 204 KWLRENYPTLNIEVDGGVGPNTIDECAKCLTGF---GGQKFMQ-----DMMPKVKWLR 253 (277)
Q Consensus 204 ~~l~~~~~~~~i~vdGgV~~~tv~~~~~~gpg~---ggq~F~~-----~~~~kI~~l~ 253 (277)
+.+..-++++.+.--|||+..|+....++|... ||+.+-+ +..++|.++.
T Consensus 145 ka~~gP~~~v~~~pTGGVs~~N~~~yla~gv~avG~Gs~l~~~~~~~~~~~~~i~~~a 202 (211)
T COG0800 145 KALAGPFPQVRFCPTGGVSLDNAADYLAAGVVAVGLGSWLVPKDLIAAGDWDRITELA 202 (211)
T ss_pred HHHcCCCCCCeEeecCCCCHHHHHHHHhCCceEEecCccccChhhhhcccHHHHHHHH
Confidence 333334678999999999999999999988663 4555433 4555555543
No 146
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=94.57 E-value=0.61 Score=40.85 Aligned_cols=77 Identities=14% Similarity=0.171 Sum_probs=51.9
Q ss_pred CCCeeeeeeeccCcHHh---HHHHHhcCCCeEEEeccCC------C-----------CCHHHHHHHHhhCCCcccc----
Q psy11600 63 PKAFFETHMMVQNPQQW---IEPMADANVDQYTFHVEPV------D-----------NVPQVIRQIKEAGMKVGQV---- 118 (277)
Q Consensus 63 ~~~~~d~Hlmv~~p~~~---i~~l~~ag~d~i~~H~e~~------d-----------~g~~~i~~i~~~~~~~~d~---- 118 (277)
.+.|+-+-+...+|+++ .+.+.++|+|.+-+|.-.. + ..-++++++|+....++.+
T Consensus 53 ~~~p~~~qi~g~~~~~~~~aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~~~~~v~vk~r~ 132 (231)
T cd02801 53 EERPLIVQLGGSDPETLAEAAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREAVPIPVTVKIRL 132 (231)
T ss_pred cCCCEEEEEcCCCHHHHHHHHHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHhcCCCEEEEEee
Confidence 46889999998888876 5555677999998886431 1 1346677777765443332
Q ss_pred -------hhhhhHHHHhcCCCeEEeecC
Q psy11600 119 -------LQDWIEPMADANVDQYTFHVE 139 (277)
Q Consensus 119 -------p~~~i~~~~~~g~d~it~H~E 139 (277)
..++++.+.++|+|++++|.-
T Consensus 133 ~~~~~~~~~~~~~~l~~~Gvd~i~v~~~ 160 (231)
T cd02801 133 GWDDEEETLELAKALEDAGASALTVHGR 160 (231)
T ss_pred ccCCchHHHHHHHHHHHhCCCEEEECCC
Confidence 234567777788888888753
No 147
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=94.57 E-value=0.19 Score=49.29 Aligned_cols=109 Identities=10% Similarity=0.131 Sum_probs=63.7
Q ss_pred CcccHHHHHHHHHHc--CCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEE
Q psy11600 16 DLSNLHSESQNLLDS--GADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTF 93 (277)
Q Consensus 16 d~~~l~~~~~~l~~~--~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~ 93 (277)
...++-+|++.+.+. |++.+.+ .|..|..+-..-.++.+.+++. ++.+.+..-..--.+.++.+.++|+..+++
T Consensus 228 s~e~V~~Ei~~~~~~~~~~~~i~f--~Dd~f~~~~~~~~~l~~~l~~~--~i~~~~~~~~~~~~e~l~~l~~aG~~~v~i 303 (472)
T TIGR03471 228 SAESVIEEVKYALENFPEVREFFF--DDDTFTDDKPRAEEIARKLGPL--GVTWSCNARANVDYETLKVMKENGLRLLLV 303 (472)
T ss_pred CHHHHHHHHHHHHHhcCCCcEEEE--eCCCCCCCHHHHHHHHHHHhhc--CceEEEEecCCCCHHHHHHHHHcCCCEEEE
Confidence 445677888887764 6777554 6877764432223445555542 444444332211345689999999999854
Q ss_pred eccCCCCCHHHHHHHHhhCCCcccchhhhhHHHHhcCCC
Q psy11600 94 HVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPMADANVD 132 (277)
Q Consensus 94 H~e~~d~g~~~i~~i~~~~~~~~d~p~~~i~~~~~~g~d 132 (277)
=+| .+.+++++.+++... .+...+.++.+.++|..
T Consensus 304 GiE--S~s~~~L~~~~K~~~--~~~~~~~i~~~~~~Gi~ 338 (472)
T TIGR03471 304 GYE--SGDQQILKNIKKGLT--VEIARRFTRDCHKLGIK 338 (472)
T ss_pred cCC--CCCHHHHHHhcCCCC--HHHHHHHHHHHHHCCCe
Confidence 444 555778877765322 12234555666666654
No 148
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=94.51 E-value=0.49 Score=43.61 Aligned_cols=128 Identities=16% Similarity=0.146 Sum_probs=87.8
Q ss_pred eeccccCcccHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeee---------------eeecc
Q psy11600 10 PSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFET---------------HMMVQ 74 (277)
Q Consensus 10 ~s~~~~d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~---------------Hlmv~ 74 (277)
|=.+..|-...-+.+++..+.|.+++++|--+-+|-.|+...-++++..++. ++.+.. .....
T Consensus 76 pv~lhlDH~~~~e~i~~ai~~Gf~sVmid~s~l~~~eni~~t~~v~~~a~~~--gv~Ve~ElG~~gg~ed~~~g~~~~~t 153 (282)
T TIGR01859 76 PVALHLDHGSSYESCIKAIKAGFSSVMIDGSHLPFEENLALTKKVVEIAHAK--GVSVEAELGTLGGIEDGVDEKEAELA 153 (282)
T ss_pred eEEEECCCCCCHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHHHHHHHc--CCEEEEeeCCCcCccccccccccccC
Confidence 5566677665566777778889999999987766665665555555444432 333221 03345
Q ss_pred CcHHhHHHHHhcCCCeEEE-----eccC---CCCCHHHHHHHHhhCCCcccc------hhhhhHHHHhcCCCeEEeecC
Q psy11600 75 NPQQWIEPMADANVDQYTF-----HVEP---VDNVPQVIRQIKEAGMKVGQV------LQDWIEPMADANVDQYTFHVE 139 (277)
Q Consensus 75 ~p~~~i~~l~~ag~d~i~~-----H~e~---~d~g~~~i~~i~~~~~~~~d~------p~~~i~~~~~~g~d~it~H~E 139 (277)
+|++..+...+.|+|++.+ |.-- ...+.+.++.+++....|+-. |.+-+..+.++|++-|.+..|
T Consensus 154 ~~eea~~f~~~tgvD~Lavs~Gt~hg~~~~~~~l~~e~L~~i~~~~~iPlv~hGgSGi~~e~i~~~i~~Gi~kiNv~T~ 232 (282)
T TIGR01859 154 DPDEAEQFVKETGVDYLAAAIGTSHGKYKGEPGLDFERLKEIKELTNIPLVLHGASGIPEEQIKKAIKLGIAKINIDTD 232 (282)
T ss_pred CHHHHHHHHHHHCcCEEeeccCccccccCCCCccCHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHcCCCEEEECcH
Confidence 7777665555589999985 5211 112789999999988766533 888899999999999999876
No 149
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=94.46 E-value=0.94 Score=43.67 Aligned_cols=84 Identities=13% Similarity=0.146 Sum_probs=57.7
Q ss_pred HHHHHHhcCCCCeeeeeeec-cCcHHh---HHHHHhcCCCeEEEeccCC------CC------CHHHH----HHHHhhCC
Q psy11600 54 VVKCLRNKIPKAFFETHMMV-QNPQQW---IEPMADANVDQYTFHVEPV------DN------VPQVI----RQIKEAGM 113 (277)
Q Consensus 54 ~v~~l~~~~~~~~~d~Hlmv-~~p~~~---i~~l~~ag~d~i~~H~e~~------d~------g~~~i----~~i~~~~~ 113 (277)
.++.+++.+++.|+-+.+|. .++++| ++.+.++|+|.+.+-+-.- ++ -++.+ +++|+.+.
T Consensus 103 ~i~~~k~~~~~~pvIaSi~~~~s~~~~~~~a~~~e~~GaD~iELNiSCPn~~~~r~~g~~~gq~~e~~~~i~~~Vk~~~~ 182 (385)
T PLN02495 103 EFKQLKEEYPDRILIASIMEEYNKDAWEEIIERVEETGVDALEINFSCPHGMPERKMGAAVGQDCDLLEEVCGWINAKAT 182 (385)
T ss_pred HHHHHHhhCCCCcEEEEccCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcCccchhhccCHHHHHHHHHHHHHhhc
Confidence 45566666788999999998 577776 5667788999998754221 11 23444 66677777
Q ss_pred Ccccc--------hhhhhHHHHhcCCCeEEee
Q psy11600 114 KVGQV--------LQDWIEPMADANVDQYTFH 137 (277)
Q Consensus 114 ~~~d~--------p~~~i~~~~~~g~d~it~H 137 (277)
.|+-+ +...++.+.++|||-|+.-
T Consensus 183 iPv~vKLsPn~t~i~~ia~aa~~~Gadgi~li 214 (385)
T PLN02495 183 VPVWAKMTPNITDITQPARVALKSGCEGVAAI 214 (385)
T ss_pred CceEEEeCCChhhHHHHHHHHHHhCCCEEEEe
Confidence 77654 3445666777899988874
No 150
>PRK03512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=94.44 E-value=1 Score=39.67 Aligned_cols=173 Identities=13% Similarity=0.092 Sum_probs=91.0
Q ss_pred cCcHHhHHHHHhcCCCeEEEeccCCCCC----HHHHHHHHhhCCC--cccchhhhhHHHHhcCCCeEEeecCCCCChHHH
Q psy11600 74 QNPQQWIEPMADANVDQYTFHVEPVDNV----PQVIRQIKEAGMK--VGQVLQDWIEPMADANVDQYTFHVEPVDNVPQV 147 (277)
Q Consensus 74 ~~p~~~i~~l~~ag~d~i~~H~e~~d~g----~~~i~~i~~~~~~--~~d~p~~~i~~~~~~g~d~it~H~E~~~~~~~~ 147 (277)
.+..+.++.+.++|+.++ |+---+.. ....+++++.+.. .-.+.-+.++.-.+.|+|. +|+. ...-.
T Consensus 19 ~~~~~~l~~~l~~G~~~v--qLR~k~~~~~~~~~la~~l~~~~~~~~~~liInd~~~lA~~~~adG--VHlg---~~d~~ 91 (211)
T PRK03512 19 VDSVQWIERLLDAGVRTL--QLRIKDRRDEEVEADVVAAIALGRRYQARLFINDYWRLAIKHQAYG--VHLG---QEDLE 91 (211)
T ss_pred ECCHHHHHHHHhCCCCEE--EEcCCCCCHHHHHHHHHHHHHHHHHhCCeEEEeCHHHHHHHcCCCE--EEcC---hHhCC
Confidence 344567999999999999 65433322 1222333322211 1111334566667788885 4664 21111
Q ss_pred HHHHHH-hCCccceeeCCCCCHHhHHHHHh-hcCceEEEEecCCCCCchhhh-hhhhhHHHHHhhCCCccEEEeCCCCcC
Q psy11600 148 IRQIKE-AGMKVGLAIKPKTPVDVIAEYIE-SADLVLIMTVEPGFGGQKFMQ-DMMPKVKWLRENYPTLNIEVDGGVGPN 224 (277)
Q Consensus 148 ~~~I~~-~g~~~g~~i~p~t~~~~i~~~i~-~~d~vl~mav~Pgt~gq~~~~-~~l~kI~~l~~~~~~~~i~vdGgV~~~ 224 (277)
....++ .|...-+|....+ ++.+....+ .+|++.+=.+-|..+=+...+ --++.+.++.+...++-+...|||+..
T Consensus 92 ~~~~r~~~~~~~~iG~S~H~-~~e~~~A~~~gaDYi~lgpvf~T~tK~~~~~~~G~~~l~~~~~~~~~~PV~AiGGI~~~ 170 (211)
T PRK03512 92 TADLNAIRAAGLRLGVSTHD-DMEIDVALAARPSYIALGHVFPTQTKQMPSAPQGLAQLARHVERLADYPTVAIGGISLE 170 (211)
T ss_pred HHHHHHhcCCCCEEEEeCCC-HHHHHHHhhcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhcCCCCEEEECCCCHH
Confidence 122333 2333345555553 333433332 568865444433211000001 112234444333345778899999999
Q ss_pred cHHHHHHccCCC---CCcccc-cCHHHHHHHHHh
Q psy11600 225 TIDECAKCLTGF---GGQKFM-QDMMPKVKWLRE 254 (277)
Q Consensus 225 tv~~~~~~gpg~---ggq~F~-~~~~~kI~~l~~ 254 (277)
++.++.+.|+++ -|..+. ++..+..++++.
T Consensus 171 ni~~l~~~Ga~GiAvisai~~~~d~~~~~~~l~~ 204 (211)
T PRK03512 171 RAPAVLATGVGSIAVVSAITQAADWRAATAQLLE 204 (211)
T ss_pred HHHHHHHcCCCEEEEhhHhhCCCCHHHHHHHHHH
Confidence 999999998885 445555 467777777665
No 151
>PRK06801 hypothetical protein; Provisional
Probab=94.40 E-value=0.44 Score=44.11 Aligned_cols=139 Identities=12% Similarity=0.071 Sum_probs=95.7
Q ss_pred eeccccCcccHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCee--eeee----------------
Q psy11600 10 PSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFF--ETHM---------------- 71 (277)
Q Consensus 10 ~s~~~~d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~--d~Hl---------------- 71 (277)
|=.+..|-...-+.+++..+.|.+++.+|--.-+|-.|+...-++++..++. ++.+ .++-
T Consensus 76 pV~lHlDH~~~~e~i~~Ai~~GftSVm~D~S~l~~eeNi~~t~~v~~~a~~~--gv~VE~ElG~vgg~e~~v~~~~~~~~ 153 (286)
T PRK06801 76 PVVLNLDHGLHFEAVVRALRLGFSSVMFDGSTLEYEENVRQTREVVKMCHAV--GVSVEAELGAVGGDEGGALYGEADSA 153 (286)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcEEEEcCCCCCHHHHHHHHHHHHHHHHHc--CCeEEeecCcccCCCCCcccCCcccc
Confidence 5556778887778888888999999999876666666877766666666553 3322 1111
Q ss_pred eccCcHHhHHHHHhcCCCeEEEeccCCCC--------CHHHHHHHHhhCCCcccc------hhhhhHHHHhcCCCeEEee
Q psy11600 72 MVQNPQQWIEPMADANVDQYTFHVEPVDN--------VPQVIRQIKEAGMKVGQV------LQDWIEPMADANVDQYTFH 137 (277)
Q Consensus 72 mv~~p~~~i~~l~~ag~d~i~~H~e~~d~--------g~~~i~~i~~~~~~~~d~------p~~~i~~~~~~g~d~it~H 137 (277)
...+|++..+...+.|+|++.+.+-...| +++.++.+++....|+-+ |++-+..++++|++.|-+.
T Consensus 154 ~~T~pe~a~~f~~~tgvD~LAvaiGt~Hg~y~~~~~l~~e~l~~i~~~~~~PLVlHGGSgi~~e~~~~~i~~Gi~KINv~ 233 (286)
T PRK06801 154 KFTDPQLARDFVDRTGIDALAVAIGNAHGKYKGEPKLDFARLAAIHQQTGLPLVLHGGSGISDADFRRAIELGIHKINFY 233 (286)
T ss_pred cCCCHHHHHHHHHHHCcCEEEeccCCCCCCCCCCCCCCHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHcCCcEEEeh
Confidence 12255555555558899999885544322 788999999887666532 8888999999999999998
Q ss_pred cCCCCChHHHHHHHHH
Q psy11600 138 VEPVDNVPQVIRQIKE 153 (277)
Q Consensus 138 ~E~~~~~~~~~~~I~~ 153 (277)
.+ -.....+.+++
T Consensus 234 T~---~~~a~~~~~~~ 246 (286)
T PRK06801 234 TG---MSQAALAAVEQ 246 (286)
T ss_pred hH---HHHHHHHHHHH
Confidence 76 33334444443
No 152
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=94.40 E-value=0.65 Score=39.95 Aligned_cols=102 Identities=15% Similarity=0.074 Sum_probs=69.8
Q ss_pred HHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEEeccCCCC
Q psy11600 21 HSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTFHVEPVDN 100 (277)
Q Consensus 21 ~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~H~e~~d~ 100 (277)
.+.++.+.+.|++.+|. |+ ..++.++..++. +.++-+..+ ++++ +....++|+|++-+.. ....
T Consensus 66 ~~~~~~a~~~Ga~~i~~--------p~--~~~~~~~~~~~~--~~~~i~gv~--t~~e-~~~A~~~Gad~i~~~p-~~~~ 129 (190)
T cd00452 66 PEQADAAIAAGAQFIVS--------PG--LDPEVVKAANRA--GIPLLPGVA--TPTE-IMQALELGADIVKLFP-AEAV 129 (190)
T ss_pred HHHHHHHHHcCCCEEEc--------CC--CCHHHHHHHHHc--CCcEECCcC--CHHH-HHHHHHCCCCEEEEcC-Cccc
Confidence 56778888899999984 33 235666666653 444444433 7765 4556789999997632 2224
Q ss_pred CHHHHHHHHhhCC-Ccccc----hhhhhHHHHhcCCCeEEeec
Q psy11600 101 VPQVIRQIKEAGM-KVGQV----LQDWIEPMADANVDQYTFHV 138 (277)
Q Consensus 101 g~~~i~~i~~~~~-~~~d~----p~~~i~~~~~~g~d~it~H~ 138 (277)
|+..+++++.... .++-. ..+-+..+.++|++.+.+..
T Consensus 130 g~~~~~~l~~~~~~~p~~a~GGI~~~n~~~~~~~G~~~v~v~s 172 (190)
T cd00452 130 GPAYIKALKGPFPQVRFMPTGGVSLDNAAEWLAAGVVAVGGGS 172 (190)
T ss_pred CHHHHHHHHhhCCCCeEEEeCCCCHHHHHHHHHCCCEEEEEch
Confidence 8999999987653 44433 66788889999999988864
No 153
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=94.34 E-value=0.078 Score=48.54 Aligned_cols=84 Identities=17% Similarity=0.337 Sum_probs=55.4
Q ss_pred ChHHHHHHHHHhC-CccceeeCCCCCHHhHHHHHhhcCceEEEEecCCCCCchhhhhhhhh-HHHHHhhCCCccEEEeCC
Q psy11600 143 NVPQVIRQIKEAG-MKVGLAIKPKTPVDVIAEYIESADLVLIMTVEPGFGGQKFMQDMMPK-VKWLRENYPTLNIEVDGG 220 (277)
Q Consensus 143 ~~~~~~~~I~~~g-~~~g~~i~p~t~~~~i~~~i~~~d~vl~mav~Pgt~gq~~~~~~l~k-I~~l~~~~~~~~i~vdGg 220 (277)
+....++.+|+.. ....+++.+.+.-+..+.+...+|++.+..+.|+ -+.+ ++.++.. +++.+++.||
T Consensus 166 ~~~~~v~~~r~~~~~~~~I~vev~t~eea~~A~~~gaD~I~ld~~~~e---------~l~~~v~~i~~~-~~i~i~asGG 235 (269)
T cd01568 166 GITEAVKRARAAAPFEKKIEVEVETLEEAEEALEAGADIIMLDNMSPE---------ELKEAVKLLKGL-PRVLLEASGG 235 (269)
T ss_pred CHHHHHHHHHHhCCCCCeEEEecCCHHHHHHHHHcCCCEEEECCCCHH---------HHHHHHHHhccC-CCeEEEEECC
Confidence 3445556666643 2456888888765544444456898876554441 1222 2223322 5788999999
Q ss_pred CCcCcHHHHHHccCCC
Q psy11600 221 VGPNTIDECAKCLTGF 236 (277)
Q Consensus 221 V~~~tv~~~~~~gpg~ 236 (277)
||.+|+.++.++|+++
T Consensus 236 It~~ni~~~a~~Gad~ 251 (269)
T cd01568 236 ITLENIRAYAETGVDV 251 (269)
T ss_pred CCHHHHHHHHHcCCCE
Confidence 9999999999999996
No 154
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=94.32 E-value=1 Score=41.48 Aligned_cols=205 Identities=15% Similarity=0.063 Sum_probs=105.0
Q ss_pred CcccHHHHHHHHHHcCCCEEEE------eccc-cccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCC
Q psy11600 16 DLSNLHSESQNLLDSGADYLHL------DVMD-GTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANV 88 (277)
Q Consensus 16 d~~~l~~~~~~l~~~~~~~~h~------DimD-g~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~ 88 (277)
|..+. ++-+..+++|+=.+-+ |+-- |... =.=+++.|+++|+. .++|+-.=....+ ..+++.+.++|+
T Consensus 14 ~v~~~-~qa~~ae~aga~~v~~~~~~~~~~~~~~~v~--R~~~~~~I~~Ik~~-V~iPVIGi~K~~~-~~Ea~~L~eaGv 88 (283)
T cd04727 14 DVTNA-EQARIAEEAGAVAVMALERVPADIRAAGGVA--RMADPKMIKEIMDA-VSIPVMAKVRIGH-FVEAQILEALGV 88 (283)
T ss_pred EeCCH-HHHHHHHHcCceEEeeeccCchhhhhcCCee--ecCCHHHHHHHHHh-CCCCeEEeeehhH-HHHHHHHHHcCC
Confidence 33443 4556677777655222 3322 2222 22389999999986 7999887666655 778999999999
Q ss_pred CeEEEeccCCCC---CHHHHHHHHhhCCCcccchhhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCCc-cceeeCC
Q psy11600 89 DQYTFHVEPVDN---VPQVIRQIKEAGMKVGQVLQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMK-VGLAIKP 164 (277)
Q Consensus 89 d~i~~H~e~~d~---g~~~i~~i~~~~~~~~d~p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~-~g~~i~p 164 (277)
|+| |..+- -..+++.+|.....++- +++. ++.+.++.++. |.. .+--+..
T Consensus 89 DiI----DaT~r~rP~~~~~~~iK~~~~~l~M---------AD~s------------tleEal~a~~~-Gad~I~TTl~g 142 (283)
T cd04727 89 DMI----DESEVLTPADEEHHIDKHKFKVPFV---------CGAR------------NLGEALRRISE-GAAMIRTKGEA 142 (283)
T ss_pred CEE----eccCCCCcHHHHHHHHHHHcCCcEE---------ccCC------------CHHHHHHHHHC-CCCEEEecCCC
Confidence 999 33321 23455555543222211 1100 34444444432 211 1223333
Q ss_pred CCCH--H---hHHHHHhhcCceEEEEecCCCC-C-chhhhhhhhhHHHHHhhCCCccEE--EeCCC-CcCcHHHHHHccC
Q psy11600 165 KTPV--D---VIAEYIESADLVLIMTVEPGFG-G-QKFMQDMMPKVKWLRENYPTLNIE--VDGGV-GPNTIDECAKCLT 234 (277)
Q Consensus 165 ~t~~--~---~i~~~i~~~d~vl~mav~Pgt~-g-q~~~~~~l~kI~~l~~~~~~~~i~--vdGgV-~~~tv~~~~~~gp 234 (277)
+|+- + -+...-..+-.+.++ ++.+. + .+-...=++.++++.+.. .+-+. ..||| +.+++..+++.|+
T Consensus 143 yT~~~~~~~~~~~~i~~~i~~~~gy--t~~t~~~~~~~~~~d~elLk~l~~~~-~iPVV~iAeGGI~Tpena~~v~e~GA 219 (283)
T cd04727 143 GTGNVVEAVRHMRAVNGEIRKLQSM--SEEELYAVAKEIQAPYELVKETAKLG-RLPVVNFAAGGVATPADAALMMQLGA 219 (283)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHhCC--CHHHHHhhhcccCCCHHHHHHHHHhc-CCCeEEEEeCCCCCHHHHHHHHHcCC
Confidence 3331 0 000000000000001 01000 0 000011123455555433 24454 78999 9999999999999
Q ss_pred CC---CCcccc-cCHHHHHHHHHh
Q psy11600 235 GF---GGQKFM-QDMMPKVKWLRE 254 (277)
Q Consensus 235 g~---ggq~F~-~~~~~kI~~l~~ 254 (277)
+. |+..|. ++.....+++++
T Consensus 220 dgVaVGSAI~~a~dP~~~tk~f~~ 243 (283)
T cd04727 220 DGVFVGSGIFKSENPEKRARAIVE 243 (283)
T ss_pred CEEEEcHHhhcCCCHHHHHHHHHH
Confidence 85 777776 466777777765
No 155
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=94.30 E-value=0.2 Score=49.72 Aligned_cols=111 Identities=10% Similarity=0.105 Sum_probs=64.6
Q ss_pred cCcccHHHHHHHHH-HcCCCEEEEeccccccccCCCCCHHHHHHHHhcC-CCCeeeeeeeccC---cHHhHHHHHhcCCC
Q psy11600 15 SDLSNLHSESQNLL-DSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKI-PKAFFETHMMVQN---PQQWIEPMADANVD 89 (277)
Q Consensus 15 ~d~~~l~~~~~~l~-~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~-~~~~~d~Hlmv~~---p~~~i~~l~~ag~d 89 (277)
-+..+.-+|++.+. +.|+.. +-+.|.+|..|-..-.++++.|.+.- .++.+.+..-+.+ -.+.++.+.++|+.
T Consensus 222 rs~e~Vv~Ei~~l~~~~gv~~--~~~~Dd~f~~~~~~~~~l~~~l~~~~~l~i~w~~~~r~~~i~~d~ell~~l~~aG~~ 299 (497)
T TIGR02026 222 RDPKKFVDEIEWLVRTHGVGF--FILADEEPTINRKKFQEFCEEIIARNPISVTWGINTRVTDIVRDADILHLYRRAGLV 299 (497)
T ss_pred CCHHHHHHHHHHHHHHcCCCE--EEEEecccccCHHHHHHHHHHHHhcCCCCeEEEEecccccccCCHHHHHHHHHhCCc
Confidence 34556778888875 468887 55688777644333345666666542 1333333333322 24578999999999
Q ss_pred eEEEeccCCCCCHHHHHHHHhhCCCcccchhhhhHHHHhcCC
Q psy11600 90 QYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPMADANV 131 (277)
Q Consensus 90 ~i~~H~e~~d~g~~~i~~i~~~~~~~~d~p~~~i~~~~~~g~ 131 (277)
.+.+=+|+ +.++.++.+++.... +-..+-++.+.++|.
T Consensus 300 ~v~iGiES--~~~~~L~~~~K~~t~--~~~~~ai~~l~~~Gi 337 (497)
T TIGR02026 300 HISLGTEA--AAQATLDHFRKGTTT--STNKEAIRLLRQHNI 337 (497)
T ss_pred EEEEcccc--CCHHHHHHhcCCCCH--HHHHHHHHHHHHCCC
Confidence 98555554 446777777654321 112334445555554
No 156
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=94.19 E-value=0.88 Score=41.51 Aligned_cols=173 Identities=16% Similarity=0.124 Sum_probs=89.2
Q ss_pred cHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcC--CCCeeeeeeeccCcHHhHHHHHhcCCCeEEEecc
Q psy11600 19 NLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKI--PKAFFETHMMVQNPQQWIEPMADANVDQYTFHVE 96 (277)
Q Consensus 19 ~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~--~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~H~e 96 (277)
.+-++++.+.+.|+..+|+ .++.+-|.-..-.+.++.+++.. .++.+.++.-.. ..+.++.+.++|++++.+=+|
T Consensus 66 ei~~~~~~~~~~g~~~~~l--~~~g~~~~~~~~~~~~~~i~~~~~~~~i~~~~~~g~~-~~e~l~~Lk~aG~~~v~i~~E 142 (296)
T TIGR00433 66 EVLEEARKAKAAGATRFCL--VASGRGPKDREFMEYVEAMVQIVEEMGLKTCATLGLL-DPEQAKRLKDAGLDYYNHNLD 142 (296)
T ss_pred HHHHHHHHHHHCCCCEEEE--EEecCCCChHHHHHHHHHHHHHHHhCCCeEEecCCCC-CHHHHHHHHHcCCCEEEEccc
Confidence 4455666667788888664 33223232221134555555321 345554444322 356789999999999966666
Q ss_pred CCCCCHHHHHHHHhhCCCcccchhhhhHHHHhcCCCeE---Ee-ecCCCCChHHHHHHHHHhCCccceeeCCCCCHHhHH
Q psy11600 97 PVDNVPQVIRQIKEAGMKVGQVLQDWIEPMADANVDQY---TF-HVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIA 172 (277)
Q Consensus 97 ~~d~g~~~i~~i~~~~~~~~d~p~~~i~~~~~~g~d~i---t~-H~E~~~~~~~~~~~I~~~g~~~g~~i~p~t~~~~i~ 172 (277)
+.+++.+.+++ ..-.+--.+.++.+.++|.... .+ +-| +..+..+.++.+. .+
T Consensus 143 ---~~~~~~~~i~~--~~s~~~~~~ai~~l~~~Gi~v~~~~i~Gl~e---t~~d~~~~~~~l~---~l------------ 199 (296)
T TIGR00433 143 ---TSQEFYSNIIS--THTYDDRVDTLENAKKAGLKVCSGGIFGLGE---TVEDRIGLALALA---NL------------ 199 (296)
T ss_pred ---CCHHHHhhccC--CCCHHHHHHHHHHHHHcCCEEEEeEEEeCCC---CHHHHHHHHHHHH---hC------------
Confidence 35666666542 1111112334556666676521 11 234 4444444443321 00
Q ss_pred HHHhhcCceE--EEEecCCCCCchh----hhhhhhhHHHHHhhCCCccEEEeCCC
Q psy11600 173 EYIESADLVL--IMTVEPGFGGQKF----MQDMMPKVKWLRENYPTLNIEVDGGV 221 (277)
Q Consensus 173 ~~i~~~d~vl--~mav~Pgt~gq~~----~~~~l~kI~~l~~~~~~~~i~vdGgV 221 (277)
..+.+. .+...|||+-..+ ..++++.+...+...|+..+-+.++-
T Consensus 200 ----~~~~i~l~~l~p~~gT~l~~~~~~s~~~~~~~ia~~r~~lp~~~i~~~~~~ 250 (296)
T TIGR00433 200 ----PPESVPINFLVKIKGTPLADNKELSADDALKTIALARIIMPKAEIRLAGGR 250 (296)
T ss_pred ----CCCEEEeeeeEEcCCCccCCCCCCCHHHHHHHHHHHHHHCCcceEEEeCCc
Confidence 011111 1233457754332 34666777777778888777665554
No 157
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=94.17 E-value=1.7 Score=39.79 Aligned_cols=69 Identities=22% Similarity=0.303 Sum_probs=37.5
Q ss_pred HHHHHHHHcCCCEEEEeccc-ccc-----ccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEEec
Q psy11600 22 SESQNLLDSGADYLHLDVMD-GTF-----VPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTFHV 95 (277)
Q Consensus 22 ~~~~~l~~~~~~~~h~DimD-g~f-----vp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~H~ 95 (277)
+-++.|.+.|++. ++ |+| +|.++=-...++.+.+. ++..+-+. +.+ .+.++...++|++++++=.
T Consensus 24 ~i~~~L~~~Gv~~-----IEvGs~~~~~~~p~~~d~~~~~~~l~~~-~~~~~~~~--~~~-~~dv~~A~~~g~~~i~i~~ 94 (274)
T cd07938 24 ELIDALSAAGLRR-----IEVTSFVSPKWVPQMADAEEVLAGLPRR-PGVRYSAL--VPN-LRGAERALAAGVDEVAVFV 94 (274)
T ss_pred HHHHHHHHcCCCE-----EEeCCCCCcccccccCCHHHHHhhcccC-CCCEEEEE--CCC-HHHHHHHHHcCcCEEEEEE
Confidence 3445566667665 55 666 44433222444444432 34444433 334 3458999999999985444
Q ss_pred cCCC
Q psy11600 96 EPVD 99 (277)
Q Consensus 96 e~~d 99 (277)
-+.+
T Consensus 95 ~~Sd 98 (274)
T cd07938 95 SASE 98 (274)
T ss_pred ecCH
Confidence 3333
No 158
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=94.14 E-value=0.056 Score=49.56 Aligned_cols=73 Identities=18% Similarity=0.213 Sum_probs=45.5
Q ss_pred hHHHHHhhCC---CccEEEeCCCCcCcHHHHHHccCCC-CCcccccCHHHHHHHHHhhCCCCeEEEeCCCCccCHHHhhC
Q psy11600 202 KVKWLRENYP---TLNIEVDGGVGPNTIDECAKCLTGF-GGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAK 277 (277)
Q Consensus 202 kI~~l~~~~~---~~~i~vdGgV~~~tv~~~~~~gpg~-ggq~F~~~~~~kI~~l~~~~~~~~I~VDGGI~~~~~~~~~~ 277 (277)
-|+++|+..| +++++|+ +++-+++..++|||. =--.|.++.+++.-+++...+...+|+-||||++|++.+++
T Consensus 177 Av~~aR~~~~~~~kIEVEve---sle~~~eAl~agaDiImLDNm~~e~~~~av~~l~~~~~~~lEaSGgIt~~ni~~yA~ 253 (280)
T COG0157 177 AVRRARAAAPFTKKIEVEVE---SLEEAEEALEAGADIIMLDNMSPEELKEAVKLLGLAGRALLEASGGITLENIREYAE 253 (280)
T ss_pred HHHHHHHhCCCCceEEEEcC---CHHHHHHHHHcCCCEEEecCCCHHHHHHHHHHhccCCceEEEEeCCCCHHHHHHHhh
Confidence 3555555554 4566654 444445557788885 22344454444444444445678899999999999988763
No 159
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=94.07 E-value=0.077 Score=45.30 Aligned_cols=74 Identities=26% Similarity=0.292 Sum_probs=41.1
Q ss_pred hHHHHHhhCCCcc-EEEeCCCCcCcHHHHHHccCCC-CCcccccCHHHHHH-HHHhhCCCCeEEEeCCCCccCHHHhh
Q psy11600 202 KVKWLRENYPTLN-IEVDGGVGPNTIDECAKCLTGF-GGQKFMQDMMPKVK-WLRENYPTLNIEVDGGVGPNTIDECA 276 (277)
Q Consensus 202 kI~~l~~~~~~~~-i~vdGgV~~~tv~~~~~~gpg~-ggq~F~~~~~~kI~-~l~~~~~~~~I~VDGGI~~~~~~~~~ 276 (277)
-++.+++..|... ++|.-- +.+-+.++.++|++. ==-.|.++.++++. .+++..++..|++-||||++|+.+++
T Consensus 69 av~~~~~~~~~~~~I~VEv~-~~ee~~ea~~~g~d~I~lD~~~~~~~~~~v~~l~~~~~~v~ie~SGGI~~~ni~~ya 145 (169)
T PF01729_consen 69 AVKAARQAAPEKKKIEVEVE-NLEEAEEALEAGADIIMLDNMSPEDLKEAVEELRELNPRVKIEASGGITLENIAEYA 145 (169)
T ss_dssp HHHHHHHHSTTTSEEEEEES-SHHHHHHHHHTT-SEEEEES-CHHHHHHHHHHHHHHTTTSEEEEESSSSTTTHHHHH
T ss_pred HHHHHHHhCCCCceEEEEcC-CHHHHHHHHHhCCCEEEecCcCHHHHHHHHHHHhhcCCcEEEEEECCCCHHHHHHHH
Confidence 3445555554432 444211 334444556677664 11223333333333 34556778999999999999998875
No 160
>PRK13958 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=94.00 E-value=2.1 Score=37.59 Aligned_cols=147 Identities=16% Similarity=0.213 Sum_probs=85.9
Q ss_pred HhHHHHHhcCCCeEEEeccCCC---CCHHHHHHHHhhCCC---cc----cc-hhhhhHHHHhcCCCeEEeecCCCCChHH
Q psy11600 78 QWIEPMADANVDQYTFHVEPVD---NVPQVIRQIKEAGMK---VG----QV-LQDWIEPMADANVDQYTFHVEPVDNVPQ 146 (277)
Q Consensus 78 ~~i~~l~~ag~d~i~~H~e~~d---~g~~~i~~i~~~~~~---~~----d~-p~~~i~~~~~~g~d~it~H~E~~~~~~~ 146 (277)
+.++.+.++|+|++-|=+.... -.+...+.|.+.-.. .+ +. |+...+...++|.|++=+|-+ ....
T Consensus 12 eda~~~~~~GaD~iGfIf~~~SpR~V~~~~a~~i~~~~~~~~~~VgVf~~~~~~~i~~~~~~~~~d~vQLHG~---e~~~ 88 (207)
T PRK13958 12 KDVTAASQLPIDAIGFIHYEKSKRHQTITQIKKLASAVPNHIDKVCVVVNPDLTTIEHILSNTSINTIQLHGT---ESID 88 (207)
T ss_pred HHHHHHHHcCCCEEEEecCCCCcccCCHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHhCCCCEEEECCC---CCHH
Confidence 3466788999999987654321 156666777664321 11 11 677777778899999999976 4455
Q ss_pred HHHHHHHh--CCccceeeCCCC-CHHhHHHHHhhcCceEEEEec--CCCCCchhhhhhhhhHHHHHhhCCCccEEEeCCC
Q psy11600 147 VIRQIKEA--GMKVGLAIKPKT-PVDVIAEYIESADLVLIMTVE--PGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGV 221 (277)
Q Consensus 147 ~~~~I~~~--g~~~g~~i~p~t-~~~~i~~~i~~~d~vl~mav~--Pgt~gq~~~~~~l~kI~~l~~~~~~~~i~vdGgV 221 (277)
..+.+++. +.+.=.++.... .++.+.+|-..+|.+++=+-. +|..|+.|.-+.+..+ ....+.+.||+
T Consensus 89 ~~~~l~~~~~~~~iika~~~~~~~~~~~~~~~~~~d~~LlDs~~~~~GGtG~~~dw~~~~~~-------~~~p~iLAGGL 161 (207)
T PRK13958 89 FIQEIKKKYSSIKIIKALPADENIIQNINKYKGFVDLFIIDTPSVSYGGTGQTYDWTILKHI-------KDIPYLIAGGI 161 (207)
T ss_pred HHHHHhhcCCCceEEEEecccHHHHHHHHHHHhhCCEEEEcCCCCCCCcCCcEeChHHhhhc-------cCCCEEEECCC
Confidence 55556542 122222233321 122234444456877766622 2344556654444322 12357899999
Q ss_pred CcCcHHHHHH--ccC
Q psy11600 222 GPNTIDECAK--CLT 234 (277)
Q Consensus 222 ~~~tv~~~~~--~gp 234 (277)
+.+|+.++.+ .+|
T Consensus 162 ~peNV~~a~~~~~~p 176 (207)
T PRK13958 162 NSENIQTVEQLKLSH 176 (207)
T ss_pred CHHHHHHHHhcCCCC
Confidence 9999988763 355
No 161
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=93.98 E-value=1.3 Score=38.87 Aligned_cols=115 Identities=12% Similarity=0.176 Sum_probs=78.0
Q ss_pred cHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEEeccCC
Q psy11600 19 NLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTFHVEPV 98 (277)
Q Consensus 19 ~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~H~e~~ 98 (277)
+..+..+.+++.|+|++|+==.|+.|. +-....+.++++++. .++|+.+-=-+.++++ ++.+.++|+|.+.+=....
T Consensus 30 dp~~~a~~~~~~g~d~l~v~dl~~~~~-~~~~~~~~i~~i~~~-~~~pv~~~GgI~~~e~-~~~~~~~Gad~vvigs~~l 106 (234)
T cd04732 30 DPVEVAKKWEEAGAKWLHVVDLDGAKG-GEPVNLELIEEIVKA-VGIPVQVGGGIRSLED-IERLLDLGVSRVIIGTAAV 106 (234)
T ss_pred CHHHHHHHHHHcCCCEEEEECCCcccc-CCCCCHHHHHHHHHh-cCCCEEEeCCcCCHHH-HHHHHHcCCCEEEECchHH
Confidence 334555566778999988854455543 234567899999986 5677777556666665 5666789999985443333
Q ss_pred CCCHHHHHHHHhhCCC-----cccc-----------------hhhhhHHHHhcCCCeEEee
Q psy11600 99 DNVPQVIRQIKEAGMK-----VGQV-----------------LQDWIEPMADANVDQYTFH 137 (277)
Q Consensus 99 d~g~~~i~~i~~~~~~-----~~d~-----------------p~~~i~~~~~~g~d~it~H 137 (277)
. .|++++.+.+.... .+|+ +.++++.+.++|++.+++|
T Consensus 107 ~-dp~~~~~i~~~~g~~~i~~sid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ga~~iii~ 166 (234)
T cd04732 107 K-NPELVKELLKEYGGERIVVGLDAKDGKVATKGWLETSEVSLEELAKRFEELGVKAIIYT 166 (234)
T ss_pred h-ChHHHHHHHHHcCCceEEEEEEeeCCEEEECCCeeecCCCHHHHHHHHHHcCCCEEEEE
Confidence 2 57777777666321 2221 5677888999999999998
No 162
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=93.95 E-value=2.8 Score=37.92 Aligned_cols=179 Identities=15% Similarity=0.189 Sum_probs=102.8
Q ss_pred EEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEEec-cC--C-CC---CHHHHHH
Q psy11600 35 LHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTFHV-EP--V-DN---VPQVIRQ 107 (277)
Q Consensus 35 ~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~H~-e~--~-d~---g~~~i~~ 107 (277)
.-+|+.||..|.-..+ ++ .. +..+|.+.++.+.+.|++++ |+ |. . .+ ...++++
T Consensus 8 paiD~~~G~~V~~~~~--------~~--------~~-~~~dp~~~a~~~~~~g~~~l--~i~Dl~~~~~~~~~n~~~i~~ 68 (258)
T PRK01033 8 PCLLLKDGGLVKTVKF--------KD--------PR-YIGDPINAVRIFNEKEVDEL--IVLDIDASKRGSEPNYELIEN 68 (258)
T ss_pred EEEEEECCcEEEeecc--------cC--------ce-eCCCHHHHHHHHHHcCCCEE--EEEECCCCcCCCcccHHHHHH
Confidence 3489999987743221 11 11 25699999999999999998 53 32 1 11 4678999
Q ss_pred HHhhCCCcccc-----hhhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCC-ccceeeCC-----------------
Q psy11600 108 IKEAGMKVGQV-----LQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGM-KVGLAIKP----------------- 164 (277)
Q Consensus 108 i~~~~~~~~d~-----p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~-~~g~~i~p----------------- 164 (277)
+.+.+..|+.+ -.+-++.+..+|++.+.+-.+.-+++.-+.+..++.+- +..+++..
T Consensus 69 i~~~~~~pv~~gGGi~s~~d~~~l~~~G~~~vvigs~~~~~~~~~~~~~~~~~~~~i~vsiD~k~g~~~~~~v~~~gw~~ 148 (258)
T PRK01033 69 LASECFMPLCYGGGIKTLEQAKKIFSLGVEKVSINTAALEDPDLITEAAERFGSQSVVVSIDVKKNLGGKFDVYTHNGTK 148 (258)
T ss_pred HHHhCCCCEEECCCCCCHHHHHHHHHCCCCEEEEChHHhcCHHHHHHHHHHhCCCcEEEEEEEecCCCCcEEEEEcCCee
Confidence 98887666654 12335556688999998876522234344445554431 11222221
Q ss_pred --CCCHHhHHHHHhh--cCceEEEEecCCCCCchhhhhhhhhHHHHHhhCCCccEEEeCCCCc-CcHHHHH-HccCCC
Q psy11600 165 --KTPVDVIAEYIES--ADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGP-NTIDECA-KCLTGF 236 (277)
Q Consensus 165 --~t~~~~i~~~i~~--~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~~~~~i~vdGgV~~-~tv~~~~-~~gpg~ 236 (277)
......+.+.+.. ++.+++..+.-....+.+. ++.++++++. .++.+..-|||.- +.+..+. +.|++.
T Consensus 149 ~~~~~~~e~~~~~~~~g~~~ii~~~i~~~G~~~G~d---~~~i~~~~~~-~~ipvIasGGv~s~eD~~~l~~~~Gvdg 222 (258)
T PRK01033 149 KLKKDPLELAKEYEALGAGEILLNSIDRDGTMKGYD---LELLKSFRNA-LKIPLIALGGAGSLDDIVEAILNLGADA 222 (258)
T ss_pred cCCCCHHHHHHHHHHcCCCEEEEEccCCCCCcCCCC---HHHHHHHHhh-CCCCEEEeCCCCCHHHHHHHHHHCCCCE
Confidence 2223334444444 5777777666532223333 3334444443 4678889999974 4555555 566553
No 163
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=93.94 E-value=4.3 Score=36.07 Aligned_cols=72 Identities=19% Similarity=0.343 Sum_probs=47.2
Q ss_pred HHHHHHHHHcCCCEEEEeccc-ccccc-----CCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEEe
Q psy11600 21 HSESQNLLDSGADYLHLDVMD-GTFVP-----NLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTFH 94 (277)
Q Consensus 21 ~~~~~~l~~~~~~~~h~DimD-g~fvp-----~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~H 94 (277)
.+-++.|.+.|+++ ++ |.+.+ .+.-..+.++.+++..++.++-+ |+.+-.+.++.+.++|++++++-
T Consensus 22 ~~i~~~L~~~GV~~-----IEvg~~~~~~~~p~~~~~~~~i~~l~~~~~~~~~~~--l~~~~~~~i~~a~~~g~~~i~i~ 94 (265)
T cd03174 22 LEIAEALDEAGVDS-----IEVGSGASPKAVPQMEDDWEVLRAIRKLVPNVKLQA--LVRNREKGIERALEAGVDEVRIF 94 (265)
T ss_pred HHHHHHHHHcCCCE-----EEeccCcCccccccCCCHHHHHHHHHhccCCcEEEE--EccCchhhHHHHHhCCcCEEEEE
Confidence 34455666667655 45 33433 33445678999998755555544 45555788999999999999776
Q ss_pred ccCCC
Q psy11600 95 VEPVD 99 (277)
Q Consensus 95 ~e~~d 99 (277)
....+
T Consensus 95 ~~~s~ 99 (265)
T cd03174 95 DSASE 99 (265)
T ss_pred EecCH
Confidence 65543
No 164
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=93.89 E-value=0.63 Score=43.20 Aligned_cols=117 Identities=15% Similarity=0.170 Sum_probs=71.8
Q ss_pred HHHHHHHHHHcCCCEEEEecccccc-----cc---------------CCCCCHHHHHHHHhcC-CCCeeeeeeeccC---
Q psy11600 20 LHSESQNLLDSGADYLHLDVMDGTF-----VP---------------NLTFGHPVVKCLRNKI-PKAFFETHMMVQN--- 75 (277)
Q Consensus 20 l~~~~~~l~~~~~~~~h~DimDg~f-----vp---------------~~~~g~~~v~~l~~~~-~~~~~d~Hlmv~~--- 75 (277)
+.+..+++.++|.|.+-+-.--|-+ .| ...|-.++++++|+.+ +++++-+-+-..+
T Consensus 143 ~~~aA~~a~~aGfDgveih~~~gyL~~qFlsp~~n~R~d~yGgs~enr~r~~~eii~avr~~~g~d~~i~vris~~~~~~ 222 (327)
T cd02803 143 FAAAARRAKEAGFDGVEIHGAHGYLLSQFLSPYTNKRTDEYGGSLENRARFLLEIVAAVREAVGPDFPVGVRLSADDFVP 222 (327)
T ss_pred HHHHHHHHHHcCCCEEEEcchhhhHHHHhcCccccCCCcccCCCHHHHHHHHHHHHHHHHHHcCCCceEEEEechhccCC
Confidence 3455667888999996555543321 12 1223368899999875 3666666554321
Q ss_pred ----c---HHhHHHHHhcCCCeEEEeccCC--------------CCCHHHHHHHHhhCCCcccc------hhhhhHHHHh
Q psy11600 76 ----P---QQWIEPMADANVDQYTFHVEPV--------------DNVPQVIRQIKEAGMKVGQV------LQDWIEPMAD 128 (277)
Q Consensus 76 ----p---~~~i~~l~~ag~d~i~~H~e~~--------------d~g~~~i~~i~~~~~~~~d~------p~~~i~~~~~ 128 (277)
+ .+.++.+.++|+|+++++.-.. ......++++|+..+.|+-. |++..+.+..
T Consensus 223 ~g~~~~e~~~la~~l~~~G~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~~Ggi~t~~~a~~~l~~ 302 (327)
T cd02803 223 GGLTLEEAIEIAKALEEAGVDALHVSGGSYESPPPIIPPPYVPEGYFLELAEKIKKAVKIPVIAVGGIRDPEVAEEILAE 302 (327)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEeCCCCCcccccccCCCCCCcchhHHHHHHHHHHCCCCEEEeCCCCCHHHHHHHHHC
Confidence 2 2347788899999997663211 11346778888877665533 5665555544
Q ss_pred cCCCeEEe
Q psy11600 129 ANVDQYTF 136 (277)
Q Consensus 129 ~g~d~it~ 136 (277)
-|+|.|.+
T Consensus 303 g~aD~V~i 310 (327)
T cd02803 303 GKADLVAL 310 (327)
T ss_pred CCCCeeee
Confidence 47888877
No 165
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=93.82 E-value=3.3 Score=40.74 Aligned_cols=115 Identities=16% Similarity=0.223 Sum_probs=71.2
Q ss_pred HHHHHHHHHcCCCEEEEeccccc-cccCCCC----CHHHHHHHHhcCCCCeeeeeeeccCc-----------HHhHHHHH
Q psy11600 21 HSESQNLLDSGADYLHLDVMDGT-FVPNLTF----GHPVVKCLRNKIPKAFFETHMMVQNP-----------QQWIEPMA 84 (277)
Q Consensus 21 ~~~~~~l~~~~~~~~h~DimDg~-fvp~~~~----g~~~v~~l~~~~~~~~~d~Hlmv~~p-----------~~~i~~l~ 84 (277)
-+-++.|.+.|++. +.+.-|. |--+++| ..+.++.+++..|+.++-.++-..|+ .+.++...
T Consensus 29 l~ia~~Ld~~Gv~~--IE~~ggatf~~~~~f~~e~p~e~l~~l~~~~~~~~l~~l~r~~N~~G~~~~pddvv~~~v~~A~ 106 (448)
T PRK12331 29 LPILEKLDNAGYHS--LEMWGGATFDACLRFLNEDPWERLRKIRKAVKKTKLQMLLRGQNLLGYRNYADDVVESFVQKSV 106 (448)
T ss_pred HHHHHHHHHcCCCE--EEecCCccchhhhccCCCCHHHHHHHHHHhCCCCEEEEEeccccccccccCchhhHHHHHHHHH
Confidence 34455677778888 6664331 2222222 23688999887788888766655543 23467788
Q ss_pred hcCCCeEEEeccCCCC--CHHHHHHHHhhCCCcc------cch-------hhhhHHHHhcCCCeEEee
Q psy11600 85 DANVDQYTFHVEPVDN--VPQVIRQIKEAGMKVG------QVL-------QDWIEPMADANVDQYTFH 137 (277)
Q Consensus 85 ~ag~d~i~~H~e~~d~--g~~~i~~i~~~~~~~~------d~p-------~~~i~~~~~~g~d~it~H 137 (277)
++|+|++.+=.-..+. ....++.+|+.+..+- +-| .++++.+.++|||.|++-
T Consensus 107 ~~Gvd~irif~~lnd~~n~~~~v~~ak~~G~~v~~~i~~t~~p~~~~~~~~~~a~~l~~~Gad~I~i~ 174 (448)
T PRK12331 107 ENGIDIIRIFDALNDVRNLETAVKATKKAGGHAQVAISYTTSPVHTIDYFVKLAKEMQEMGADSICIK 174 (448)
T ss_pred HCCCCEEEEEEecCcHHHHHHHHHHHHHcCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcCCCEEEEc
Confidence 8999998443222332 4456677777654311 013 456678889999999884
No 166
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=93.72 E-value=2.4 Score=38.56 Aligned_cols=63 Identities=16% Similarity=0.043 Sum_probs=50.6
Q ss_pred ccCc-HHhHHHHHhcCCCeEEEec-cCCCCCHHHHHHHHhhCCCcccc-----hhhhhHHHHhcCCCeEEeec
Q psy11600 73 VQNP-QQWIEPMADANVDQYTFHV-EPVDNVPQVIRQIKEAGMKVGQV-----LQDWIEPMADANVDQYTFHV 138 (277)
Q Consensus 73 v~~p-~~~i~~l~~ag~d~i~~H~-e~~d~g~~~i~~i~~~~~~~~d~-----p~~~i~~~~~~g~d~it~H~ 138 (277)
..|| .+..+.+.++|++|+ |+ |-.....++|+++.+.+..++.+ . +-++.+.++||+.+.+-.
T Consensus 36 ~~~pp~~~A~~~~~~Ga~~l--HvVDLg~~n~~~i~~i~~~~~~~v~vGGGIr~-e~v~~~l~aGa~rVvIGS 105 (253)
T TIGR02129 36 SDKPSSYYAKLYKDDGVKGC--HVIMLGPNNDDAAKEALHAYPGGLQVGGGIND-TNAQEWLDEGASHVIVTS 105 (253)
T ss_pred cCCCHHHHHHHHHHcCCCEE--EEEECCCCcHHHHHHHHHhCCCCEEEeCCcCH-HHHHHHHHcCCCEEEECc
Confidence 3578 999999999999999 63 33222567888888887777766 5 889999999999999965
No 167
>PRK08445 hypothetical protein; Provisional
Probab=93.67 E-value=1.6 Score=41.32 Aligned_cols=82 Identities=11% Similarity=0.181 Sum_probs=52.4
Q ss_pred CcccHHHHHHHHHHcCCCEEEEecccc-ccccCCCCCHHHHHHHHhcCCCCeeee----------eeeccCcHHhHHHHH
Q psy11600 16 DLSNLHSESQNLLDSGADYLHLDVMDG-TFVPNLTFGHPVVKCLRNKIPKAFFET----------HMMVQNPQQWIEPMA 84 (277)
Q Consensus 16 d~~~l~~~~~~l~~~~~~~~h~DimDg-~fvp~~~~g~~~v~~l~~~~~~~~~d~----------Hlmv~~p~~~i~~l~ 84 (277)
+...+.+.++++.+.|+..+|+ .+| ++.-.+.+=.++++.+++.+|++.+.+ ++.-....+.+++|.
T Consensus 74 ~~eeI~~~~~~a~~~g~~~i~~--~gg~~~~~~~e~~~~l~~~Ik~~~p~i~~~a~s~~ei~~~a~~~~~~~~e~L~~Lk 151 (348)
T PRK08445 74 SFEEIDKKIEELLAIGGTQILF--QGGVHPKLKIEWYENLVSHIAQKYPTITIHGFSAVEIDYIAKISKISIKEVLERLQ 151 (348)
T ss_pred CHHHHHHHHHHHHHcCCCEEEE--ecCCCCCCCHHHHHHHHHHHHHHCCCcEEEEccHHHHHHHHHHhCCCHHHHHHHHH
Confidence 5567778888899999998876 332 332222233578889999877765432 111112367899999
Q ss_pred hcCCCeEE-EeccCCC
Q psy11600 85 DANVDQYT-FHVEPVD 99 (277)
Q Consensus 85 ~ag~d~i~-~H~e~~d 99 (277)
++|.+.++ .=.|+.+
T Consensus 152 eAGl~~~~g~glE~~~ 167 (348)
T PRK08445 152 AKGLSSIPGAGAEILS 167 (348)
T ss_pred HcCCCCCCCCceeeCC
Confidence 99999883 1245544
No 168
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=93.67 E-value=2 Score=39.63 Aligned_cols=82 Identities=7% Similarity=-0.059 Sum_probs=59.3
Q ss_pred HHHHHhcCCCCeeeeeeecc-CcHH---hHHHHHhcCCCeEEEeccCCCC----CHHHHHHHHhhCCCcccc----hhhh
Q psy11600 55 VKCLRNKIPKAFFETHMMVQ-NPQQ---WIEPMADANVDQYTFHVEPVDN----VPQVIRQIKEAGMKVGQV----LQDW 122 (277)
Q Consensus 55 v~~l~~~~~~~~~d~Hlmv~-~p~~---~i~~l~~ag~d~i~~H~e~~d~----g~~~i~~i~~~~~~~~d~----p~~~ 122 (277)
.+.+++. ...++-+.|... ++.. .++.+.+.|++.+-+|.++... ..+.++++++.+..|+-+ ..+.
T Consensus 107 ~~~i~~~-~~~~~~~ql~~~~~~~~~~~~i~~~~~~g~~~i~l~~~~p~~~~~~~~~~i~~l~~~~~~pvivK~v~s~~~ 185 (299)
T cd02809 107 LEEVAAA-APGPRWFQLYVPRDREITEDLLRRAEAAGYKALVLTVDTPVLGRRLTWDDLAWLRSQWKGPLILKGILTPED 185 (299)
T ss_pred HHHHHHh-cCCCeEEEEeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCCHHHHHHHHHhcCCCEEEeecCCHHH
Confidence 4455554 336788888775 6654 3566677899999999887542 357899999987665543 4556
Q ss_pred hHHHHhcCCCeEEee
Q psy11600 123 IEPMADANVDQYTFH 137 (277)
Q Consensus 123 i~~~~~~g~d~it~H 137 (277)
+..+.++|+|.|++|
T Consensus 186 a~~a~~~G~d~I~v~ 200 (299)
T cd02809 186 ALRAVDAGADGIVVS 200 (299)
T ss_pred HHHHHHCCCCEEEEc
Confidence 788899999999996
No 169
>cd03312 CIMS_N_terminal_like CIMS - Cobalamine-independent methonine synthase, or MetE, N-terminal domain_like. Many members have been characterized as 5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferases, EC:2.1.1.14, mostly from bacteria and plants. This enzyme catalyses the last step in the production of methionine by transferring a methyl group from 5-methyltetrahydrofolate to L-homocysteine without using an intermediate methyl carrier. The active enzyme has a dual (beta-alpha)8-barrel structure, and this model covers the N-terminal barrel, and a few single-barrel sequences most similar to the N-terminal barrel. It is assumed that the homologous N-terminal barrel has evolved from the C-terminus via gene duplication and has subsequently lost binding sites, and it seems as if the two barrels forming the active enzyme may sometimes reside on different polypeptides. The C-terminal domain incorporates the Zinc ion, which binds and activates homocysteine. Side chains fro
Probab=93.66 E-value=1.4 Score=42.09 Aligned_cols=76 Identities=17% Similarity=0.221 Sum_probs=51.5
Q ss_pred HHHHHHHHHHcCCCEEEEeccccccccCCC-----CCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEEe
Q psy11600 20 LHSESQNLLDSGADYLHLDVMDGTFVPNLT-----FGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTFH 94 (277)
Q Consensus 20 l~~~~~~l~~~~~~~~h~DimDg~fvp~~~-----~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~H 94 (277)
+.++++.|.+.|++|+++| |-.++-... ...+.++.+.+..|+..+.+|....+....++.+.+..+|.+ |
T Consensus 184 y~~el~~L~~aG~~~IQiD--EP~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~l~tyfg~~~~~~~~l~~l~Vd~l--~ 259 (360)
T cd03312 184 YKELLKKLAAAGAEWVQID--EPALVLDLPEEWLAAFKRAYEELAKAAPGLKLLLATYFGSLGENLDLLASLPVDGL--H 259 (360)
T ss_pred HHHHHHHHHHCCCCEEEee--CChhhcCCCHHHHHHHHHHHHHHhcCCCCCcEEEEecccchHHHHHHHHcCCCCEE--E
Confidence 4578999999999998888 422221111 112444555444356778888888887777888999999999 6
Q ss_pred ccCCC
Q psy11600 95 VEPVD 99 (277)
Q Consensus 95 ~e~~d 99 (277)
+|..+
T Consensus 260 le~~~ 264 (360)
T cd03312 260 LDLVR 264 (360)
T ss_pred EEecC
Confidence 66544
No 170
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=93.65 E-value=1.5 Score=38.55 Aligned_cols=139 Identities=10% Similarity=0.093 Sum_probs=87.7
Q ss_pred hHHHHHhcCCCeEEEeccCCCCCHHHHHHHHhhCCC-cc---cc-hhhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHH
Q psy11600 79 WIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMK-VG---QV-LQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKE 153 (277)
Q Consensus 79 ~i~~l~~ag~d~i~~H~e~~d~g~~~i~~i~~~~~~-~~---d~-p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~ 153 (277)
.++.+.+.|...+-+=+. ..+..+.|+.+++.... .+ .+ -.+-++..+++|++++-=.. ..+++++..++
T Consensus 21 ia~al~~gGi~~iEit~~-tp~a~~~I~~l~~~~~~~~vGAGTVl~~e~a~~ai~aGA~FivSP~----~~~~vi~~a~~ 95 (201)
T PRK06015 21 LARALAAGGLPAIEITLR-TPAALDAIRAVAAEVEEAIVGAGTILNAKQFEDAAKAGSRFIVSPG----TTQELLAAAND 95 (201)
T ss_pred HHHHHHHCCCCEEEEeCC-CccHHHHHHHHHHHCCCCEEeeEeCcCHHHHHHHHHcCCCEEECCC----CCHHHHHHHHH
Confidence 477788889998755444 23466677777665432 11 11 45677999999999765332 22567777776
Q ss_pred hCCccceeeCCCC-CHHhHHHHHh-hcCceEEEEecCCCC--CchhhhhhhhhHHHHHhhCCCccEEEeCCCCcCcHHHH
Q psy11600 154 AGMKVGLAIKPKT-PVDVIAEYIE-SADLVLIMTVEPGFG--GQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDEC 229 (277)
Q Consensus 154 ~g~~~g~~i~p~t-~~~~i~~~i~-~~d~vl~mav~Pgt~--gq~~~~~~l~kI~~l~~~~~~~~i~vdGgV~~~tv~~~ 229 (277)
. ++-.-||. +.+++....+ -+++ +=+-|... |. +-++.++.-+|++.+.--|||+.+|+.+.
T Consensus 96 ~----~i~~iPG~~TptEi~~A~~~Ga~~---vK~FPa~~~GG~-------~yikal~~plp~~~l~ptGGV~~~n~~~~ 161 (201)
T PRK06015 96 S----DVPLLPGAATPSEVMALREEGYTV---LKFFPAEQAGGA-------AFLKALSSPLAGTFFCPTGGISLKNARDY 161 (201)
T ss_pred c----CCCEeCCCCCHHHHHHHHHCCCCE---EEECCchhhCCH-------HHHHHHHhhCCCCcEEecCCCCHHHHHHH
Confidence 4 55566762 3334433332 2333 23456421 21 23566677789999999999999999999
Q ss_pred HHccCCC
Q psy11600 230 AKCLTGF 236 (277)
Q Consensus 230 ~~~gpg~ 236 (277)
.++|.-+
T Consensus 162 l~ag~~~ 168 (201)
T PRK06015 162 LSLPNVV 168 (201)
T ss_pred HhCCCeE
Confidence 9986443
No 171
>COG0284 PyrF Orotidine-5'-phosphate decarboxylase [Nucleotide transport and metabolism]
Probab=93.63 E-value=0.54 Score=42.42 Aligned_cols=63 Identities=16% Similarity=0.172 Sum_probs=48.6
Q ss_pred cHHhHHHHHhcCCCeEEEeccC-CCCCHHHHHHHHhhCCC------cccch---hhhhHHHHhcCCCeEEeecC
Q psy11600 76 PQQWIEPMADANVDQYTFHVEP-VDNVPQVIRQIKEAGMK------VGQVL---QDWIEPMADANVDQYTFHVE 139 (277)
Q Consensus 76 p~~~i~~l~~ag~d~i~~H~e~-~d~g~~~i~~i~~~~~~------~~d~p---~~~i~~~~~~g~d~it~H~E 139 (277)
+.++++.+.+ -++++-++.+. ..+|+.+++.+++.... .+|+| ..+.+...+.|+|++|+|.-
T Consensus 26 ~~~~~~~~~~-~~~~~Kvg~~l~~~~g~~~~~el~~~~~~VflDlK~~DIpnT~~~~~~~~~~~g~d~vtvH~~ 98 (240)
T COG0284 26 ALAFVDKLGP-TVDFVKVGKPLVAFFGADILEELKARGKKVFLDLKLADIPNTVALAAKAAADLGADAVTVHAF 98 (240)
T ss_pred HHHHHHHhhc-cccEEEEchHHHHhccHHHHHHHHHhCCceEEeeecccchHHHHHHHHHhhhcCCcEEEEeCc
Confidence 4455666665 57888888886 35699999999999853 33555 67888999999999999985
No 172
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=93.63 E-value=0.67 Score=46.13 Aligned_cols=65 Identities=20% Similarity=0.345 Sum_probs=48.7
Q ss_pred HHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcH--HhHHHHHhcCCCeEEE
Q psy11600 21 HSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQ--QWIEPMADANVDQYTF 93 (277)
Q Consensus 21 ~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~--~~i~~l~~ag~d~i~~ 93 (277)
.+.++.|.++|+|.+|+|.-+|+-. +-.+.++++|+.+|++++ ++.|-. +..+.+.++|+|.+-+
T Consensus 243 ~~~~~~l~~ag~d~i~id~a~G~s~----~~~~~i~~ik~~~~~~~v----~aG~V~t~~~a~~~~~aGad~I~v 309 (495)
T PTZ00314 243 IERAAALIEAGVDVLVVDSSQGNSI----YQIDMIKKLKSNYPHVDI----IAGNVVTADQAKNLIDAGADGLRI 309 (495)
T ss_pred HHHHHHHHHCCCCEEEEecCCCCch----HHHHHHHHHHhhCCCceE----EECCcCCHHHHHHHHHcCCCEEEE
Confidence 5677778889999999999887553 335789999998776544 444433 4577889999999843
No 173
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=93.59 E-value=1.1 Score=42.11 Aligned_cols=127 Identities=13% Similarity=0.130 Sum_probs=88.6
Q ss_pred eEeeeccccCcccHHHHHHHHHHcCCCEEEEeccccccccCCC---CC----------HHHHHHHHhcCCCCeeeeeeec
Q psy11600 7 MIGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLT---FG----------HPVVKCLRNKIPKAFFETHMMV 73 (277)
Q Consensus 7 ~~~~s~~~~d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~---~g----------~~~v~~l~~~~~~~~~d~Hlmv 73 (277)
-+..+|...|...+.+..+.+++.|.|. +||-=|--+++.. +| .++|+.+++. .++|+.|=+=+
T Consensus 56 p~~vQl~g~~p~~~~~aA~~~~~~g~d~--IDlN~GCP~~~v~~~g~Gs~Ll~~p~~~~~iv~av~~~-~~~PVsvKiR~ 132 (318)
T TIGR00742 56 PVALQLGGSDPNDLAKCAKIAEKRGYDE--INLNVGCPSDRVQNGNFGACLMGNADLVADCVKAMQEA-VNIPVTVKHRI 132 (318)
T ss_pred cEEEEEccCCHHHHHHHHHHHHhCCCCE--EEEECCCCHHHhCCCCeehHhhcCHHHHHHHHHHHHHH-hCCCeEEEEec
Confidence 4778999999999999999999988888 7765454333322 22 4677888875 67888887755
Q ss_pred c--C------cHHhHHHHHhcCCCeEEEeccCC--CC------------CHHHHHHHHhhC-CCcc----cc--hhhhhH
Q psy11600 74 Q--N------PQQWIEPMADANVDQYTFHVEPV--DN------------VPQVIRQIKEAG-MKVG----QV--LQDWIE 124 (277)
Q Consensus 74 ~--~------p~~~i~~l~~ag~d~i~~H~e~~--d~------------g~~~i~~i~~~~-~~~~----d~--p~~~i~ 124 (277)
. + ..++++.+.++|++.+++|.-.. .| -...|+++++.. ..|+ |+ +++..+
T Consensus 133 g~~~~~~~~~~~~~~~~l~~~G~~~itvHgRt~~~qg~sg~~~~~~~~~~~~~i~~vk~~~~~ipVi~NGdI~s~~da~~ 212 (318)
T TIGR00742 133 GIDPLDSYEFLCDFVEIVSGKGCQNFIVHARKAWLSGLSPKENREIPPLRYERVYQLKKDFPHLTIEINGGIKNSEQIKQ 212 (318)
T ss_pred CCCCcchHHHHHHHHHHHHHcCCCEEEEeCCchhhcCCCccccccCCchhHHHHHHHHHhCCCCcEEEECCcCCHHHHHH
Confidence 2 1 23457888899999999997752 11 124577777754 4444 33 777777
Q ss_pred HHHhcCCCeEEeec
Q psy11600 125 PMADANVDQYTFHV 138 (277)
Q Consensus 125 ~~~~~g~d~it~H~ 138 (277)
.+. |||.|-+--
T Consensus 213 ~l~--g~dgVMigR 224 (318)
T TIGR00742 213 HLS--HVDGVMVGR 224 (318)
T ss_pred HHh--CCCEEEECH
Confidence 663 898887743
No 174
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=93.56 E-value=1.7 Score=38.24 Aligned_cols=114 Identities=15% Similarity=0.261 Sum_probs=74.7
Q ss_pred cHHHHHHHHHHcCCCEEEEeccc--cccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEEecc
Q psy11600 19 NLHSESQNLLDSGADYLHLDVMD--GTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTFHVE 96 (277)
Q Consensus 19 ~l~~~~~~l~~~~~~~~h~DimD--g~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~H~e 96 (277)
+..+..+.+++.|++++|+ .| +.+- .-.-..++++++++. +++|+.+.=-+.+++ .++.+.++|++.+.+=..
T Consensus 29 dp~~~a~~~~~~g~~~l~v--~dl~~~~~-g~~~~~~~i~~i~~~-~~~pi~~ggGI~~~e-d~~~~~~~Ga~~vvlgs~ 103 (230)
T TIGR00007 29 DPVEAAKKWEEEGAERIHV--VDLDGAKE-GGPVNLPVIKKIVRE-TGVPVQVGGGIRSLE-DVEKLLDLGVDRVIIGTA 103 (230)
T ss_pred CHHHHHHHHHHcCCCEEEE--EeCCcccc-CCCCcHHHHHHHHHh-cCCCEEEeCCcCCHH-HHHHHHHcCCCEEEEChH
Confidence 4445666678899999998 44 3332 112245789999986 677777766666665 456778899998854333
Q ss_pred CCCCCHHHHHHHHhhC--CC-c--cc----------------c-hhhhhHHHHhcCCCeEEeec
Q psy11600 97 PVDNVPQVIRQIKEAG--MK-V--GQ----------------V-LQDWIEPMADANVDQYTFHV 138 (277)
Q Consensus 97 ~~d~g~~~i~~i~~~~--~~-~--~d----------------~-p~~~i~~~~~~g~d~it~H~ 138 (277)
... .++.++++.+.. .. . +| . |.++++.+.+.|++.+++|.
T Consensus 104 ~l~-d~~~~~~~~~~~g~~~i~~sid~~~~~v~~~g~~~~~~~~~~~~~~~~~~~g~~~ii~~~ 166 (230)
T TIGR00007 104 AVE-NPDLVKELLKEYGPERIVVSLDARGGEVAVKGWLEKSEVSLEELAKRLEELGLEGIIYTD 166 (230)
T ss_pred Hhh-CHHHHHHHHHHhCCCcEEEEEEEECCEEEEcCCcccCCCCHHHHHHHHHhCCCCEEEEEe
Confidence 332 455566654442 21 1 12 1 56788899999999999883
No 175
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=93.45 E-value=2.2 Score=42.05 Aligned_cols=144 Identities=16% Similarity=0.171 Sum_probs=85.2
Q ss_pred hHHHHHhcCCCeEEEeccCCC--C-CHHHHHHHHhhCC-Ccc----cc-hhhhhHHHHhcCCCeEEeecCCCCChHHHHH
Q psy11600 79 WIEPMADANVDQYTFHVEPVD--N-VPQVIRQIKEAGM-KVG----QV-LQDWIEPMADANVDQYTFHVEPVDNVPQVIR 149 (277)
Q Consensus 79 ~i~~l~~ag~d~i~~H~e~~d--~-g~~~i~~i~~~~~-~~~----d~-p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~ 149 (277)
.+....++|+|++-|-+.... . .++..+.+.+.-. ..+ +. |+...+...+++.|++=+|-. ......+
T Consensus 269 da~~a~~~GaD~lGfIf~~~SpR~V~~~~a~~i~~~l~v~~VgVfv~~~~~~i~~i~~~~~lD~vQLHG~---e~~~~~~ 345 (454)
T PRK09427 269 DAKAAYDAGAVYGGLIFVEKSPRYVSLEQAQEIIAAAPLRYVGVFRNADIEDIVDIAKQLSLAAVQLHGD---EDQAYID 345 (454)
T ss_pred HHHHHHhCCCCEEeeEeCCCCCCCCCHHHHHHHHHhCCCCEEEEEeCCCHHHHHHHHHHcCCCEEEeCCC---CCHHHHH
Confidence 456678899999998754321 1 4666666665432 111 11 677777788999999999975 3344445
Q ss_pred HHHHh---CCccceeeCCCCCHHhHHHHHhhcCceEEEEecCCCCCchhhhhhhhhHHHHHhhCCCccEEEeCCCCcCcH
Q psy11600 150 QIKEA---GMKVGLAIKPKTPVDVIAEYIESADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTI 226 (277)
Q Consensus 150 ~I~~~---g~~~g~~i~p~t~~~~i~~~i~~~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~~~~~i~vdGgV~~~tv 226 (277)
.++.. +++.=-++++..... ..++ ..+|.+++=+ .+|..|+.|.-..+. ... ...+.+.||++.+|+
T Consensus 346 ~l~~~~~~~~~iikai~v~~~~~-~~~~-~~~d~~LlDs-~~GGtG~~~DW~~l~------~~~-~~p~iLAGGL~peNV 415 (454)
T PRK09427 346 ALREALPKTCQIWKAISVGDTLP-ARDL-QHVDRYLLDN-GQGGTGQTFDWSLLP------GQS-LDNVLLAGGLNPDNC 415 (454)
T ss_pred HHHhhcCCCCeEEEEeecCchhh-hhhh-cCCCEEEEcC-CCCCCCCccChHHhh------hcc-cCCEEEECCCCHHHH
Confidence 55532 122222333332211 1222 2367766555 455557776543332 111 346889999999999
Q ss_pred HHHHHccCC
Q psy11600 227 DECAKCLTG 235 (277)
Q Consensus 227 ~~~~~~gpg 235 (277)
.+..+.+|-
T Consensus 416 ~~ai~~~P~ 424 (454)
T PRK09427 416 QQAAQLGCA 424 (454)
T ss_pred HHHHhcCCC
Confidence 988777774
No 176
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=93.38 E-value=3.8 Score=37.44 Aligned_cols=70 Identities=21% Similarity=0.340 Sum_probs=42.7
Q ss_pred HHHHHHHHcCCCEEEEeccccc-cccCCCC---C-HHHHHHHHhcCCCCeeeeeeeccC-----------cHHhHHHHHh
Q psy11600 22 SESQNLLDSGADYLHLDVMDGT-FVPNLTF---G-HPVVKCLRNKIPKAFFETHMMVQN-----------PQQWIEPMAD 85 (277)
Q Consensus 22 ~~~~~l~~~~~~~~h~DimDg~-fvp~~~~---g-~~~v~~l~~~~~~~~~d~Hlmv~~-----------p~~~i~~l~~ 85 (277)
+-.+.|.+.|+++ +++--+. |.-+..| . .+.++.+++..++.++-++....| -...++...+
T Consensus 25 ~ia~~L~~~Gv~~--iE~G~~a~~~~~~~~~~~~~~e~i~~~~~~~~~~~l~~~~r~~~~~~~~~~p~~~~~~di~~~~~ 102 (275)
T cd07937 25 PIAEALDEAGFFS--LEVWGGATFDVCMRFLNEDPWERLRELRKAMPNTPLQMLLRGQNLVGYRHYPDDVVELFVEKAAK 102 (275)
T ss_pred HHHHHHHHcCCCE--EEccCCcchhhhccccCCCHHHHHHHHHHhCCCCceehhcccccccCccCCCcHHHHHHHHHHHH
Confidence 4456677888777 5554322 3221222 2 367788887777777777665432 2345777788
Q ss_pred cCCCeEEE
Q psy11600 86 ANVDQYTF 93 (277)
Q Consensus 86 ag~d~i~~ 93 (277)
+|++++++
T Consensus 103 ~g~~~iri 110 (275)
T cd07937 103 NGIDIFRI 110 (275)
T ss_pred cCCCEEEE
Confidence 89998844
No 177
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=93.31 E-value=0.92 Score=41.92 Aligned_cols=83 Identities=13% Similarity=0.157 Sum_probs=56.7
Q ss_pred ceEeeecccc-CcccHHHHHHHHHHcCCCEEEEeccccccccCC----C------CCH----HHHHHHHhcCCCCeeeee
Q psy11600 6 CMIGPSILNS-DLSNLHSESQNLLDSGADYLHLDVMDGTFVPNL----T------FGH----PVVKCLRNKIPKAFFETH 70 (277)
Q Consensus 6 ~~~~~s~~~~-d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~----~------~g~----~~v~~l~~~~~~~~~d~H 70 (277)
.-+..|+... |...+.+..+.+++.|+|++=+.+ .+||. . ..+ ++++++|+. +++|+.+=
T Consensus 100 ~p~i~si~G~~~~~~~~~~a~~~~~~gad~ielN~----sCP~~~~~~~~G~~l~~~~~~~~~iv~~v~~~-~~~Pv~vK 174 (299)
T cd02940 100 KILIASIMCEYNKEDWTELAKLVEEAGADALELNF----SCPHGMPERGMGAAVGQDPELVEEICRWVREA-VKIPVIAK 174 (299)
T ss_pred CeEEEEecCCCCHHHHHHHHHHHHhcCCCEEEEEC----CCCCCCCCCCCchhhccCHHHHHHHHHHHHHh-cCCCeEEE
Confidence 3477899988 998999999999888888844433 24553 1 112 456677764 57777766
Q ss_pred eec--cCcHHhHHHHHhcCCCeEEE
Q psy11600 71 MMV--QNPQQWIEPMADANVDQYTF 93 (277)
Q Consensus 71 lmv--~~p~~~i~~l~~ag~d~i~~ 93 (277)
|=- .+..+.++.+.++|+|.+++
T Consensus 175 l~~~~~~~~~~a~~~~~~Gadgi~~ 199 (299)
T cd02940 175 LTPNITDIREIARAAKEGGADGVSA 199 (299)
T ss_pred CCCCchhHHHHHHHHHHcCCCEEEE
Confidence 532 23445678888999999984
No 178
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=93.27 E-value=2.8 Score=36.82 Aligned_cols=163 Identities=20% Similarity=0.289 Sum_probs=77.3
Q ss_pred HHHHHHHcCCCEEEE--eccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccC-c-------------HHhHHHHHhc
Q psy11600 23 ESQNLLDSGADYLHL--DVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQN-P-------------QQWIEPMADA 86 (277)
Q Consensus 23 ~~~~l~~~~~~~~h~--DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~-p-------------~~~i~~l~~a 86 (277)
.....++.|+|.+.+ +...|-..|++ ..++..++. .+ +.+|.|+.. . .+.++.+.++
T Consensus 12 ~a~~A~~~GAdRiELc~~l~~GGlTPS~----g~i~~~~~~-~~--ipv~vMIRpr~gdF~Ys~~E~~~M~~dI~~~~~~ 84 (201)
T PF03932_consen 12 DALAAEAGGADRIELCSNLEVGGLTPSL----GLIRQAREA-VD--IPVHVMIRPRGGDFVYSDEEIEIMKEDIRMLREL 84 (201)
T ss_dssp HHHHHHHTT-SEEEEEBTGGGT-B---H----HHHHHHHHH-TT--SEEEEE--SSSS-S---HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCEEEECCCccCCCcCcCH----HHHHHHHhh-cC--CceEEEECCCCCCccCCHHHHHHHHHHHHHHHHc
Confidence 344557789999776 44567788763 468888874 45 567888863 1 1247777888
Q ss_pred CCCeEEEeccCCCCCHHHHHHHHhhCCCcccchhhhhHHHH-hcCCCeEEeecCCCCChHHHHHHHHHhCCccceeeCCC
Q psy11600 87 NVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPMA-DANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPK 165 (277)
Q Consensus 87 g~d~i~~H~e~~d~g~~~i~~i~~~~~~~~d~p~~~i~~~~-~~g~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~i~p~ 165 (277)
|+|-+-|=+=..|+ .+.....+.|. .++.--+|||--- +.+.+..+.+.+
T Consensus 85 GadG~VfG~L~~dg----------------~iD~~~~~~Li~~a~~~~~tFHRAf-D~~~d~~~al~~------------ 135 (201)
T PF03932_consen 85 GADGFVFGALTEDG----------------EIDEEALEELIEAAGGMPVTFHRAF-DEVPDPEEALEQ------------ 135 (201)
T ss_dssp T-SEEEE--BETTS----------------SB-HHHHHHHHHHHTTSEEEE-GGG-GGSSTHHHHHHH------------
T ss_pred CCCeeEEEeECCCC----------------CcCHHHHHHHHHhcCCCeEEEeCcH-HHhCCHHHHHHH------------
Confidence 88877433211122 01122333332 3456678888520 011112222221
Q ss_pred CCHHhHHHHHhhcCceEEEEecCCCCCchhhhhhhhhHHHHHhh-CCCccEEEeCCCCcCcHHHHHH-ccC
Q psy11600 166 TPVDVIAEYIESADLVLIMTVEPGFGGQKFMQDMMPKVKWLREN-YPTLNIEVDGGVGPNTIDECAK-CLT 234 (277)
Q Consensus 166 t~~~~i~~~i~~~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~-~~~~~i~vdGgV~~~tv~~~~~-~gp 234 (277)
++ ..++--++|- |.+ .-..+-++.++.+.+. ...+.|.+=|||+..|++.+.+ .|.
T Consensus 136 --------L~-~lG~~rVLTS--Gg~--~~a~~g~~~L~~lv~~a~~~i~Im~GgGv~~~nv~~l~~~tg~ 193 (201)
T PF03932_consen 136 --------LI-ELGFDRVLTS--GGA--PTALEGIENLKELVEQAKGRIEIMPGGGVRAENVPELVEETGV 193 (201)
T ss_dssp --------HH-HHT-SEEEES--TTS--SSTTTCHHHHHHHHHHHTTSSEEEEESS--TTTHHHHHHHHT-
T ss_pred --------HH-hcCCCEEECC--CCC--CCHHHHHHHHHHHHHHcCCCcEEEecCCCCHHHHHHHHHhhCC
Confidence 11 1123333432 221 1122234455554333 4578899999999999998877 443
No 179
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=93.27 E-value=4.1 Score=36.30 Aligned_cols=171 Identities=14% Similarity=0.139 Sum_probs=102.3
Q ss_pred HHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEEeccCCCCCHHHHHHHHhhC-CC-c-c-----cc-hhhh
Q psy11600 52 HPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAG-MK-V-G-----QV-LQDW 122 (277)
Q Consensus 52 ~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~H~e~~d~g~~~i~~i~~~~-~~-~-~-----d~-p~~~ 122 (277)
.++++.|.+. +=+++....=..+-.+.++.+.+.|...+-+=+.. ....+.|+.+++.- .. + + .+ -.+.
T Consensus 6 ~~~~~~l~~~-~vi~Vvr~~~~~~a~~~~~al~~gGi~~iEiT~~t-p~a~~~i~~l~~~~~~~~p~~~vGaGTVl~~e~ 83 (222)
T PRK07114 6 IAVLTAMKAT-GMVPVFYHADVEVAKKVIKACYDGGARVFEFTNRG-DFAHEVFAELVKYAAKELPGMILGVGSIVDAAT 83 (222)
T ss_pred HHHHHHHHhC-CEEEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCC-CcHHHHHHHHHHHHHhhCCCeEEeeEeCcCHHH
Confidence 3566777753 44444333322233335777888999977444432 23666777776432 21 2 1 11 4566
Q ss_pred hHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCCccceeeCCCC-CHHhHHHHHhh-cCceEEEEecCC-CCCchhhhhh
Q psy11600 123 IEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKT-PVDVIAEYIES-ADLVLIMTVEPG-FGGQKFMQDM 199 (277)
Q Consensus 123 i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~i~p~t-~~~~i~~~i~~-~d~vl~mav~Pg-t~gq~~~~~~ 199 (277)
++..+++||+++-=.. ..+++++..++. ++-.-||. +.+++...++. ++. +=+-|. ..|
T Consensus 84 a~~a~~aGA~FiVsP~----~~~~v~~~~~~~----~i~~iPG~~TpsEi~~A~~~Ga~~---vKlFPA~~~G------- 145 (222)
T PRK07114 84 AALYIQLGANFIVTPL----FNPDIAKVCNRR----KVPYSPGCGSLSEIGYAEELGCEI---VKLFPGSVYG------- 145 (222)
T ss_pred HHHHHHcCCCEEECCC----CCHHHHHHHHHc----CCCEeCCCCCHHHHHHHHHCCCCE---EEECcccccC-------
Confidence 7889999999764321 235677777764 55666772 44444444322 333 234553 222
Q ss_pred hhhHHHHHhhCCCccEEEeCCCCc--CcHHHHHHccCCC---CCcccc
Q psy11600 200 MPKVKWLRENYPTLNIEVDGGVGP--NTIDECAKCLTGF---GGQKFM 242 (277)
Q Consensus 200 l~kI~~l~~~~~~~~i~vdGgV~~--~tv~~~~~~gpg~---ggq~F~ 242 (277)
..-++.++.-+|++.+.--|||+. +|+.+..++|... |++.|.
T Consensus 146 ~~~ikal~~p~p~i~~~ptGGV~~~~~n~~~yl~aGa~avg~Gs~L~~ 193 (222)
T PRK07114 146 PGFVKAIKGPMPWTKIMPTGGVEPTEENLKKWFGAGVTCVGMGSKLIP 193 (222)
T ss_pred HHHHHHHhccCCCCeEEeCCCCCcchhcHHHHHhCCCEEEEEChhhcC
Confidence 233566666789999999999998 7999999987664 566654
No 180
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=93.17 E-value=0.47 Score=43.87 Aligned_cols=26 Identities=27% Similarity=0.585 Sum_probs=23.3
Q ss_pred CCccEEEeCCCCcCcHHHHHHccCCC
Q psy11600 211 PTLNIEVDGGVGPNTIDECAKCLTGF 236 (277)
Q Consensus 211 ~~~~i~vdGgV~~~tv~~~~~~gpg~ 236 (277)
+++.+++.||||++|+.++.+.|.++
T Consensus 235 ~~~~leaSGGI~~~ni~~yA~tGvD~ 260 (284)
T PRK06096 235 PHCTLSLAGGINLNTLKNYADCGIRL 260 (284)
T ss_pred CCeEEEEECCCCHHHHHHHHhcCCCE
Confidence 45568899999999999999999997
No 181
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=93.08 E-value=1.5 Score=41.48 Aligned_cols=210 Identities=12% Similarity=0.171 Sum_probs=119.3
Q ss_pred eeccccCcccHHHHHHHHHHcCCCEEEE-----------------ecc-ccccccCCCC---CH-HHHHHHHhcCCCCee
Q psy11600 10 PSILNSDLSNLHSESQNLLDSGADYLHL-----------------DVM-DGTFVPNLTF---GH-PVVKCLRNKIPKAFF 67 (277)
Q Consensus 10 ~s~~~~d~~~l~~~~~~l~~~~~~~~h~-----------------Dim-Dg~fvp~~~~---g~-~~v~~l~~~~~~~~~ 67 (277)
|-.+++=+..-.+.++.+.+.|+..+=+ ..- +..+.+.++| |. .+++.+++...++|+
T Consensus 61 Pi~~AsG~~~~~~~~~~~~~~G~Gavv~ktvt~~p~~gn~~pr~~~~~~~~~~~N~~gl~n~g~~~~~~~l~~~~~~~pv 140 (344)
T PRK05286 61 PVGLAAGFDKNGEAIDALGALGFGFVEVGTVTPRPQPGNPKPRLFRLPEDEALINRMGFNNDGADALAERLKKAYRGIPL 140 (344)
T ss_pred CCEECCCCCCChHHHHHHHHcCCCEEEeCCcCCCCCCCCCCCCEEecccccccccCCCCCCHhHHHHHHHHHHhcCCCcE
Confidence 4344444555567788887776655311 111 1345555666 23 356667653356788
Q ss_pred eeeeecc-------CcHHhHHHHHhcC--CCeEEEeccCCC--C---------CHHHHHHHHhhCC-----Ccccc----
Q psy11600 68 ETHMMVQ-------NPQQWIEPMADAN--VDQYTFHVEPVD--N---------VPQVIRQIKEAGM-----KVGQV---- 118 (277)
Q Consensus 68 d~Hlmv~-------~p~~~i~~l~~ag--~d~i~~H~e~~d--~---------g~~~i~~i~~~~~-----~~~d~---- 118 (277)
-+.+.-. ..++|.+.+.+++ +|.+.+-+-.-. + -.++++++|+... .|+-+
T Consensus 141 ivsI~~~~~~~~~~~~~d~~~~~~~~~~~ad~lelN~scP~~~g~~~~~~~~~~~eiv~aVr~~~~~~~~~~PV~vKlsp 220 (344)
T PRK05286 141 GINIGKNKDTPLEDAVDDYLICLEKLYPYADYFTVNISSPNTPGLRDLQYGEALDELLAALKEAQAELHGYVPLLVKIAP 220 (344)
T ss_pred EEEEecCCCCCcccCHHHHHHHHHHHHhhCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHHHHhccccCCceEEEeCC
Confidence 8888643 3567777666665 898865542211 1 3468888888765 56544
Q ss_pred ------hhhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCCccceeeCCCCCHHhHHHHHhhcCceEEEEecCCCCC
Q psy11600 119 ------LQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIMTVEPGFGG 192 (277)
Q Consensus 119 ------p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~i~p~t~~~~i~~~i~~~d~vl~mav~Pgt~g 192 (277)
....++.+.++|+|.|++|-- ... ... +... ... ...-|.+|
T Consensus 221 ~~~~~~~~~ia~~l~~~Gadgi~~~nt---~~~-~~~-~~~~------~~~---------------------~~~gg~SG 268 (344)
T PRK05286 221 DLSDEELDDIADLALEHGIDGVIATNT---TLS-RDG-LKGL------PNA---------------------DEAGGLSG 268 (344)
T ss_pred CCCHHHHHHHHHHHHHhCCcEEEEeCC---ccc-ccc-cccc------ccC---------------------CCCCCccc
Confidence 234567778899999999863 211 000 0000 000 00113344
Q ss_pred chhhhhhhhhHHHHHhhCC-CccEEEeCCCCc-CcHHHHHHccCCC---CCcccc--cCHHHHHHH
Q psy11600 193 QKFMQDMMPKVKWLRENYP-TLNIEVDGGVGP-NTIDECAKCLTGF---GGQKFM--QDMMPKVKW 251 (277)
Q Consensus 193 q~~~~~~l~kI~~l~~~~~-~~~i~vdGgV~~-~tv~~~~~~gpg~---ggq~F~--~~~~~kI~~ 251 (277)
....+-.++.+.++++..+ ++.+...|||.- +.+.+++.+|++. |...+. |....+|++
T Consensus 269 ~~~~~~~l~~v~~l~~~~~~~ipIig~GGI~s~eda~e~l~aGAd~V~v~~~~~~~gP~~~~~i~~ 334 (344)
T PRK05286 269 RPLFERSTEVIRRLYKELGGRLPIIGVGGIDSAEDAYEKIRAGASLVQIYSGLIYEGPGLVKEIVR 334 (344)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcCCCHHHHHHHHHHhCchHHHHHHH
Confidence 3333445566777766543 588888999963 4556667788885 554432 666666653
No 182
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=93.05 E-value=0.54 Score=43.23 Aligned_cols=26 Identities=23% Similarity=0.335 Sum_probs=23.3
Q ss_pred CCccEEEeCCCCcCcHHHHHHccCCC
Q psy11600 211 PTLNIEVDGGVGPNTIDECAKCLTGF 236 (277)
Q Consensus 211 ~~~~i~vdGgV~~~tv~~~~~~gpg~ 236 (277)
+++.+++-|||+++|+.++.+.|+++
T Consensus 228 ~~~~ieAsGgIt~~ni~~ya~~GvD~ 253 (273)
T PRK05848 228 PHVLLEASGNITLENINAYAKSGVDA 253 (273)
T ss_pred CCeEEEEECCCCHHHHHHHHHcCCCE
Confidence 45678899999999999999999997
No 183
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=93.02 E-value=3.3 Score=40.10 Aligned_cols=173 Identities=12% Similarity=0.139 Sum_probs=96.5
Q ss_pred HHHHHHhcCCCCeeeeeeecc-CcHHh---HHHHHhcCCCeEEEeccCCC------C----------CHHHHHHHHhhCC
Q psy11600 54 VVKCLRNKIPKAFFETHMMVQ-NPQQW---IEPMADANVDQYTFHVEPVD------N----------VPQVIRQIKEAGM 113 (277)
Q Consensus 54 ~v~~l~~~~~~~~~d~Hlmv~-~p~~~---i~~l~~ag~d~i~~H~e~~d------~----------g~~~i~~i~~~~~ 113 (277)
.++.+++..++.++-+.++-. +++++ .+.+.++|+|+|.+-+-.-. + --++++++++.+.
T Consensus 89 ~~~~~~~~~~~~p~i~si~g~~~~~~~~~~a~~~~~~g~d~ielN~scP~~~~~~~~g~~~~~~~~~~~~i~~~v~~~~~ 168 (420)
T PRK08318 89 EIRRVKRDYPDRALIASIMVECNEEEWKEIAPLVEETGADGIELNFGCPHGMSERGMGSAVGQVPELVEMYTRWVKRGSR 168 (420)
T ss_pred HHHHHHhhCCCceEEEEeccCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCccccCCcccccCCHHHHHHHHHHHHhccC
Confidence 344555544567888888877 66654 56667789999976543211 1 3456777777776
Q ss_pred Ccccc--------hhhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCCccceeeCCCCCHHhHHHHHhhcCceEEEE
Q psy11600 114 KVGQV--------LQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIMT 185 (277)
Q Consensus 114 ~~~d~--------p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~i~p~t~~~~i~~~i~~~d~vl~ma 185 (277)
.|+.+ ....++.+.++|+|.+++-- ++... .++.+.|. .-.+.+.. =+
T Consensus 169 ~Pv~vKl~p~~~~~~~~a~~~~~~Gadgi~~~N----t~~~~------------~~id~~~~--~~~p~~~~------~~ 224 (420)
T PRK08318 169 LPVIVKLTPNITDIREPARAAKRGGADAVSLIN----TINSI------------TGVDLDRM--IPMPIVNG------KS 224 (420)
T ss_pred CcEEEEcCCCcccHHHHHHHHHHCCCCEEEEec----ccCcc------------cccccccc--CCCceecC------CC
Confidence 66654 23556667788999888631 11100 00110000 00000000 00
Q ss_pred ecCCCCCchhhhhhhhhHHHHHhhC--CCccEEEeCCCC-cCcHHHHHHccCCC---CCcccc--cCHHHHHH
Q psy11600 186 VEPGFGGQKFMQDMMPKVKWLRENY--PTLNIEVDGGVG-PNTIDECAKCLTGF---GGQKFM--QDMMPKVK 250 (277)
Q Consensus 186 v~Pgt~gq~~~~~~l~kI~~l~~~~--~~~~i~vdGgV~-~~tv~~~~~~gpg~---ggq~F~--~~~~~kI~ 250 (277)
..=|.+|....+-.++.|.++++.. +++.|.--|||. .+.+.+++.+|++. ++..+. +....+|.
T Consensus 225 ~~gg~SG~a~~p~~l~~v~~~~~~~~~~~ipIig~GGI~s~~da~e~i~aGA~~Vqi~ta~~~~gp~ii~~I~ 297 (420)
T PRK08318 225 SHGGYCGPAVKPIALNMVAEIARDPETRGLPISGIGGIETWRDAAEFILLGAGTVQVCTAAMQYGFRIVEDMI 297 (420)
T ss_pred CcccccchhhhHHHHHHHHHHHhccccCCCCEEeecCcCCHHHHHHHHHhCCChheeeeeeccCCchhHHHHH
Confidence 0124566555566678888887754 368888889985 23444556688885 554444 44444444
No 184
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=92.98 E-value=1.2 Score=41.18 Aligned_cols=113 Identities=15% Similarity=0.049 Sum_probs=73.6
Q ss_pred CcccHHHHHHHHHHcCCCEE--EEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEE
Q psy11600 16 DLSNLHSESQNLLDSGADYL--HLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTF 93 (277)
Q Consensus 16 d~~~l~~~~~~l~~~~~~~~--h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~ 93 (277)
|...+.+.++.+++.|++.+ |+|.-- +.-.+..+.++++|+. ++.|+.+.. +.. .+..+.+.++|+|.|.+
T Consensus 127 ~~~~~~~~i~~~~~~g~~~i~l~~~~p~----~~~~~~~~~i~~l~~~-~~~pvivK~-v~s-~~~a~~a~~~G~d~I~v 199 (299)
T cd02809 127 DREITEDLLRRAEAAGYKALVLTVDTPV----LGRRLTWDDLAWLRSQ-WKGPLILKG-ILT-PEDALRAVDAGADGIVV 199 (299)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCCC----CCCCCCHHHHHHHHHh-cCCCEEEee-cCC-HHHHHHHHHCCCCEEEE
Confidence 66777788888899999963 333322 1122456899999986 567777653 333 45678899999999998
Q ss_pred ecc---CCCCCH---HHHHHHHhhCC--Ccccc------hhhhhHHHHhcCCCeEEe
Q psy11600 94 HVE---PVDNVP---QVIRQIKEAGM--KVGQV------LQDWIEPMADANVDQYTF 136 (277)
Q Consensus 94 H~e---~~d~g~---~~i~~i~~~~~--~~~d~------p~~~i~~~~~~g~d~it~ 136 (277)
|-- ..++++ ..+.++++... .++-. +.+.++.++ +|||.|.+
T Consensus 200 ~~~gG~~~~~g~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~kal~-lGAd~V~i 255 (299)
T cd02809 200 SNHGGRQLDGAPATIDALPEIVAAVGGRIEVLLDGGIRRGTDVLKALA-LGADAVLI 255 (299)
T ss_pred cCCCCCCCCCCcCHHHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHH-cCCCEEEE
Confidence 531 123333 34555555432 33322 788888885 89998887
No 185
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=92.94 E-value=0.2 Score=45.90 Aligned_cols=70 Identities=23% Similarity=0.286 Sum_probs=44.6
Q ss_pred hHHHHHhhCC-CccEEEeCCCCcCcHHHH---HHccCCC-CCcccccCHHHHHHH-HHhhCCCCeEEEeCCCCccCHHHh
Q psy11600 202 KVKWLRENYP-TLNIEVDGGVGPNTIDEC---AKCLTGF-GGQKFMQDMMPKVKW-LRENYPTLNIEVDGGVGPNTIDEC 275 (277)
Q Consensus 202 kI~~l~~~~~-~~~i~vdGgV~~~tv~~~---~~~gpg~-ggq~F~~~~~~kI~~-l~~~~~~~~I~VDGGI~~~~~~~~ 275 (277)
.++.+++..+ +..+.| ...|.+++ .++|+++ +=..|.++.++++.+ +++. ++..|++.||||++|+..+
T Consensus 170 ~v~~~r~~~~~~~~I~v----ev~t~eea~~A~~~gaD~I~ld~~~~e~l~~~v~~i~~~-~~i~i~asGGIt~~ni~~~ 244 (269)
T cd01568 170 AVKRARAAAPFEKKIEV----EVETLEEAEEALEAGADIIMLDNMSPEELKEAVKLLKGL-PRVLLEASGGITLENIRAY 244 (269)
T ss_pred HHHHHHHhCCCCCeEEE----ecCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHhccC-CCeEEEEECCCCHHHHHHH
Confidence 4666777665 444544 45666665 4467775 334566655554333 2322 5678999999999999887
Q ss_pred h
Q psy11600 276 A 276 (277)
Q Consensus 276 ~ 276 (277)
+
T Consensus 245 a 245 (269)
T cd01568 245 A 245 (269)
T ss_pred H
Confidence 5
No 186
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=92.91 E-value=3.2 Score=39.10 Aligned_cols=74 Identities=12% Similarity=0.298 Sum_probs=50.6
Q ss_pred cCcccHHHHHHHHHHcCCCEEEEeccccccccCCCCC--HHHHHHHHhcCCCCeeeeee---------ec-cCcHHhHHH
Q psy11600 15 SDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFG--HPVVKCLRNKIPKAFFETHM---------MV-QNPQQWIEP 82 (277)
Q Consensus 15 ~d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g--~~~v~~l~~~~~~~~~d~Hl---------mv-~~p~~~i~~ 82 (277)
.+...+.++++.+.+.|+..+++- +|.. |...+. .++++.+|+.+|++.+.+-- -. .-..+.++.
T Consensus 70 ls~eeI~e~~~~~~~~G~~~i~l~--gG~~-p~~~~~~~~~i~~~Ik~~~~~i~~~~~t~~ei~~~~~~~g~~~~e~l~~ 146 (343)
T TIGR03551 70 LSLEEIAERAAEAWKAGATEVCIQ--GGIH-PDLDGDFYLDILRAVKEEVPGMHIHAFSPMEVYYGARNSGLSVEEALKR 146 (343)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEE--eCCC-CCCCHHHHHHHHHHHHHHCCCceEEecCHHHHHHHHHHcCCCHHHHHHH
Confidence 566777888889999999986655 6654 544443 47788998876665443310 01 123567999
Q ss_pred HHhcCCCeE
Q psy11600 83 MADANVDQY 91 (277)
Q Consensus 83 l~~ag~d~i 91 (277)
+.+||++.+
T Consensus 147 LkeAGl~~i 155 (343)
T TIGR03551 147 LKEAGLDSM 155 (343)
T ss_pred HHHhCcccc
Confidence 999999988
No 187
>COG1954 GlpP Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]
Probab=92.90 E-value=0.95 Score=38.76 Aligned_cols=117 Identities=17% Similarity=0.292 Sum_probs=77.9
Q ss_pred eccccCcccHHHHHHHHHHcCCC-EEEEeccccccccCCCCCHHHHHHHHhcCCCCeeee-----------------eee
Q psy11600 11 SILNSDLSNLHSESQNLLDSGAD-YLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFET-----------------HMM 72 (277)
Q Consensus 11 s~~~~d~~~l~~~~~~l~~~~~~-~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~-----------------Hlm 72 (277)
.+|..+..++.+-++.+++.|-. ++|+|..+|-- |=-++.+++++.-+ |+=-++. -+.
T Consensus 28 flL~~~i~~ik~ivk~lK~~gK~vfiHvDLv~Gl~--~~e~~i~fi~~~~~--pdGIISTk~~~i~~Akk~~~~aIqR~F 103 (181)
T COG1954 28 FLLTGHILNIKEIVKKLKNRGKTVFIHVDLVEGLS--NDEVAIEFIKEVIK--PDGIISTKSNVIKKAKKLGILAIQRLF 103 (181)
T ss_pred EEEechhhhHHHHHHHHHhCCcEEEEEeHHhcccC--CchHHHHHHHHhcc--CCeeEEccHHHHHHHHHcCCceeeeee
Confidence 57889999999999999987654 68999999743 33355555544331 3322221 222
Q ss_pred ccC---cHHhHHHHHhcCCCeEEEeccCCCC-CHHHHHHHHhhCCCcccc-----hhhhhHHHHhcCCCeEE
Q psy11600 73 VQN---PQQWIEPMADANVDQYTFHVEPVDN-VPQVIRQIKEAGMKVGQV-----LQDWIEPMADANVDQYT 135 (277)
Q Consensus 73 v~~---p~~~i~~l~~ag~d~i~~H~e~~d~-g~~~i~~i~~~~~~~~d~-----p~~~i~~~~~~g~d~it 135 (277)
.-| .++-++.+.+.++|.+ |++.| .|++++.+.+++..|+-. -.+-+.+-.++||-.+|
T Consensus 104 ilDS~Al~~~~~~i~~~~pD~i----EvLPGv~Pkvi~~i~~~t~~piIAGGLi~t~Eev~~Al~aGA~avS 171 (181)
T COG1954 104 ILDSIALEKGIKQIEKSEPDFI----EVLPGVMPKVIKEITEKTHIPIIAGGLIETEEEVREALKAGAVAVS 171 (181)
T ss_pred eecHHHHHHHHHHHHHcCCCEE----EEcCcccHHHHHHHHHhcCCCEEeccccccHHHHHHHHHhCcEEEe
Confidence 223 4445777777888877 67777 899999999998877643 34455556666666655
No 188
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=92.88 E-value=2.9 Score=36.67 Aligned_cols=106 Identities=11% Similarity=0.027 Sum_probs=68.1
Q ss_pred ccHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEEeccC
Q psy11600 18 SNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTFHVEP 97 (277)
Q Consensus 18 ~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~H~e~ 97 (277)
....+.++.+.+.|+|.+|+- ++ ...+.++++++. ++++-. .+ .+.+.++.+.++|+|++.+|.-.
T Consensus 67 ~~~~~~~~~~~~~g~d~v~l~--~~-------~~~~~~~~~~~~--~i~~i~--~v-~~~~~~~~~~~~gad~i~~~~~~ 132 (236)
T cd04730 67 PDFEALLEVALEEGVPVVSFS--FG-------PPAEVVERLKAA--GIKVIP--TV-TSVEEARKAEAAGADALVAQGAE 132 (236)
T ss_pred cCHHHHHHHHHhCCCCEEEEc--CC-------CCHHHHHHHHHc--CCEEEE--eC-CCHHHHHHHHHcCCCEEEEeCcC
Confidence 357778899999999998862 22 236778888863 444422 23 34466778888999999776421
Q ss_pred CCC--------CHHHHHHHHhhCCCcccc-----hhhhhHHHHhcCCCeEEee
Q psy11600 98 VDN--------VPQVIRQIKEAGMKVGQV-----LQDWIEPMADANVDQYTFH 137 (277)
Q Consensus 98 ~d~--------g~~~i~~i~~~~~~~~d~-----p~~~i~~~~~~g~d~it~H 137 (277)
..| ....++++++....|+-. +.+-+..+.++|+|.|.+-
T Consensus 133 ~~G~~~~~~~~~~~~i~~i~~~~~~Pvi~~GGI~~~~~v~~~l~~GadgV~vg 185 (236)
T cd04730 133 AGGHRGTFDIGTFALVPEVRDAVDIPVIAAGGIADGRGIAAALALGADGVQMG 185 (236)
T ss_pred CCCCCCccccCHHHHHHHHHHHhCCCEEEECCCCCHHHHHHHHHcCCcEEEEc
Confidence 111 245788888776655533 3233444456889887774
No 189
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=92.76 E-value=2 Score=39.72 Aligned_cols=160 Identities=14% Similarity=0.068 Sum_probs=91.2
Q ss_pred CCCeeeeeeeccCcHHhHHHH---Hhc---CCCeEEEeccCCC--C----------CHHHHHHHHhhCCCcccc---h--
Q psy11600 63 PKAFFETHMMVQNPQQWIEPM---ADA---NVDQYTFHVEPVD--N----------VPQVIRQIKEAGMKVGQV---L-- 119 (277)
Q Consensus 63 ~~~~~d~Hlmv~~p~~~i~~l---~~a---g~d~i~~H~e~~d--~----------g~~~i~~i~~~~~~~~d~---p-- 119 (277)
++.|+-+.++-. ++++++.+ .+. |+|++-+-+-... + --++++++|+.+..|+-+ |
T Consensus 90 ~~~pvivsi~g~-~~~~~~~~~~~~~~~~~~ad~ielN~sCPn~~~~~~~~~~~~~~~~i~~~v~~~~~iPv~vKl~p~~ 168 (294)
T cd04741 90 SAKPFFISVTGS-AEDIAAMYKKIAAHQKQFPLAMELNLSCPNVPGKPPPAYDFDATLEYLTAVKAAYSIPVGVKTPPYT 168 (294)
T ss_pred cCCeEEEECCCC-HHHHHHHHHHHHhhccccccEEEEECCCCCCCCcccccCCHHHHHHHHHHHHHhcCCCEEEEeCCCC
Confidence 467899999877 88775544 343 6899866443211 1 345677777777666644 2
Q ss_pred -----hhhhHHHHhc--CCCeEEeecCCCCChHHHHHHHHHhCCccceeeCC--CCCHHhHHHHHhhcCceEEEEecCCC
Q psy11600 120 -----QDWIEPMADA--NVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKP--KTPVDVIAEYIESADLVLIMTVEPGF 190 (277)
Q Consensus 120 -----~~~i~~~~~~--g~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~i~p--~t~~~~i~~~i~~~d~vl~mav~Pgt 190 (277)
.+.++.+.++ |+|.||.+- ++. .++.+.+ .++. +..- .-.-|.
T Consensus 169 ~~~~~~~~a~~l~~~~~G~~gi~~~N----t~~------------~~~~id~~~~~~~------~~~~------~~~gG~ 220 (294)
T cd04741 169 DPAQFDTLAEALNAFACPISFITATN----TLG------------NGLVLDPERETVV------LKPK------TGFGGL 220 (294)
T ss_pred CHHHHHHHHHHHhccccCCcEEEEEc----cCC------------ccccccCCCCCcc------cCCC------CCCCCc
Confidence 2333444556 888888642 110 0111111 0000 0000 001144
Q ss_pred CCchhhhhhhhhHHHHHhhCC-CccEEEeCCCCc-CcHHHHHHccCCC---CCccc--ccCHHHHHHH
Q psy11600 191 GGQKFMQDMMPKVKWLRENYP-TLNIEVDGGVGP-NTIDECAKCLTGF---GGQKF--MQDMMPKVKW 251 (277)
Q Consensus 191 ~gq~~~~~~l~kI~~l~~~~~-~~~i~vdGgV~~-~tv~~~~~~gpg~---ggq~F--~~~~~~kI~~ 251 (277)
+|....+..+..|.++++..+ ++.|.-.|||.- +.+.+++.+|++. ++..+ .+...++|.+
T Consensus 221 SG~~i~~~al~~v~~~~~~~~~~ipIig~GGI~s~~da~e~l~aGA~~Vqv~ta~~~~gp~~~~~i~~ 288 (294)
T cd04741 221 AGAYLHPLALGNVRTFRRLLPSEIQIIGVGGVLDGRGAFRMRLAGASAVQVGTALGKEGPKVFARIEK 288 (294)
T ss_pred CchhhHHHHHHHHHHHHHhcCCCCCEEEeCCCCCHHHHHHHHHcCCCceeEchhhhhcCchHHHHHHH
Confidence 555556667788888877765 688999999853 4455566788885 55544 3677777653
No 190
>TIGR02351 thiH thiazole biosynthesis protein ThiH. Members this protein family are the ThiH protein of thiamine biosynthesis, a homolog of the BioB protein of biotin biosynthesis. Genes for the this protein generally are found in operons with other thiamin biosynthesis genes.
Probab=92.71 E-value=3 Score=39.75 Aligned_cols=177 Identities=14% Similarity=0.119 Sum_probs=96.3
Q ss_pred cCcccHHHHHHHHHHcCCCEEEEeccccccccCCCC--CHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEE
Q psy11600 15 SDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTF--GHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYT 92 (277)
Q Consensus 15 ~d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~--g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~ 92 (277)
.+...+.++++.+.+.|+..+|+= -|.--+...+ =.+.++.+++.+|.+.+.+.. . -.+.++.|.++|++.++
T Consensus 103 Ls~eEI~~~a~~~~~~Gv~~i~lv--gGe~p~~~~~e~l~eii~~Ik~~~p~i~Iei~~--l-t~e~~~~Lk~aGv~r~~ 177 (366)
T TIGR02351 103 LNEEEIEREIEAIKKSGFKEILLV--TGESEKAAGVEYIAEAIKLAREYFSSLAIEVQP--L-NEEEYKKLVEAGLDGVT 177 (366)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEe--eCCCCCCCCHHHHHHHHHHHHHhCCcccccccc--C-CHHHHHHHHHcCCCEEE
Confidence 355667778888888999987763 3432222222 246777888766655554432 2 33457899999999997
Q ss_pred EeccCCCCCHHHHHHHHhhCCCcccchhhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCCc-cceeeCCCCCHHhH
Q psy11600 93 FHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMK-VGLAIKPKTPVDVI 171 (277)
Q Consensus 93 ~H~e~~d~g~~~i~~i~~~~~~~~d~p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~-~g~~i~p~t~~~~i 171 (277)
+-.|+.+ +...+.+...+.. ++ ++ ..-+.++.++++|+. .+.|+-.|.+-...
T Consensus 178 i~lET~~--~~~y~~i~~~g~~-h~-~~----------------------~rl~~i~~a~~aG~~~v~~g~i~Gl~e~~~ 231 (366)
T TIGR02351 178 VYQETYN--EKKYKKHHLAGKK-KD-FR----------------------YRLNTPERAAKAGMRKIGIGALLGLDDWRT 231 (366)
T ss_pred EEeecCC--HHHHHhcCcCCCC-CC-HH----------------------HHHHHHHHHHHcCCCeeceeEEEeCchhHH
Confidence 7777765 3344333211110 00 00 112344455566665 46666666553211
Q ss_pred HH--------HHhhc-----CceEEEEecCCCC---Cch-h-hhhhhhhHHHHHhhCCCccEEEeCCCC
Q psy11600 172 AE--------YIESA-----DLVLIMTVEPGFG---GQK-F-MQDMMPKVKWLRENYPTLNIEVDGGVG 222 (277)
Q Consensus 172 ~~--------~i~~~-----d~vl~mav~Pgt~---gq~-~-~~~~l~kI~~l~~~~~~~~i~vdGgV~ 222 (277)
.. ++... .-+.+.-++|..+ .+. + -.++++.|..+|-.+|+..|.+.||=.
T Consensus 232 d~~~~a~~l~~L~~~~~~~~~sv~~~~l~P~~g~~~~~~~l~~~~~~~~i~~~R~~~P~~~i~~s~g~~ 300 (366)
T TIGR02351 232 DAFFTAYHLRYLQKKYWKTEISISVPRLRPCTNGLKPKVIVTDRELVQIICAYRLFDPFVEISLSTRES 300 (366)
T ss_pred HHHHHHHHHHHHHHHcCCCCccccccccccCCCCCCCCCcCCHHHHHHHHHHHHHhCcccccEEecCCC
Confidence 11 11111 2233334555432 111 1 345666677777788999999988864
No 191
>cd03311 CIMS_C_terminal_like CIMS - Cobalamine-independent methonine synthase, or MetE, C-terminal domain_like. Many members have been characterized as 5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferases, EC:2.1.1.14, mostly from bacteria and plants. This enzyme catalyses the last step in the production of methionine by transferring a methyl group from 5-methyltetrahydrofolate to L-homocysteine without using an intermediate methyl carrier. The active enzyme has a dual (beta-alpha)8-barrel structure, and this model covers the C-terminal barrel, and a few single-barrel sequences most similar to the C-terminal barrel. It is assumed that the homologous N-terminal barrel has evolved from the C-terminus via gene duplication and has subsequently lost binding sites, and it seems as if the two barrels forming the active enzyme may sometimes reside on different polypeptides. The C-terminal domain incorporates the Zinc ion, which binds and activates homocysteine. Sidechains from
Probab=92.68 E-value=3 Score=38.81 Aligned_cols=77 Identities=19% Similarity=0.235 Sum_probs=48.7
Q ss_pred cHHHHHHHHHHcCCCEEEEeccccccccCC-------CCCHHHHHHHHhcCCCCeeeeeeeccCc----------HHhHH
Q psy11600 19 NLHSESQNLLDSGADYLHLDVMDGTFVPNL-------TFGHPVVKCLRNKIPKAFFETHMMVQNP----------QQWIE 81 (277)
Q Consensus 19 ~l~~~~~~l~~~~~~~~h~DimDg~fvp~~-------~~g~~~v~~l~~~~~~~~~d~Hlmv~~p----------~~~i~ 81 (277)
.+.++++.|.++|++++.+|=-.-.+..+- .+--..++.+++.-++..+-+|+--.|. ...++
T Consensus 156 ~~~~e~~~l~~aG~~~iQiDEP~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~lHiC~G~~~~~~~~~~~y~~i~~ 235 (332)
T cd03311 156 ALREEIRDLYDAGCRYIQIDEPALAEGLPLEPDDLAADYLKWANEALADRPDDTQIHTHICYGNFRSTWAAEGGYEPIAE 235 (332)
T ss_pred HHHHHHHHHHHcCCCEEEeecchhhccCCcccHHHHHHHHHHHHHHHHhCCCCCEEEEEEECCCCcccccccCcHHHHHH
Confidence 355788889999999999885442222211 1122344444442246677778877777 56677
Q ss_pred HHHhcCCCeEEEec
Q psy11600 82 PMADANVDQYTFHV 95 (277)
Q Consensus 82 ~l~~ag~d~i~~H~ 95 (277)
.+.+.++|.+++.+
T Consensus 236 ~l~~~~vd~~~le~ 249 (332)
T cd03311 236 YIFELDVDVFFLEY 249 (332)
T ss_pred HHHhCCCCEEEEEE
Confidence 88888888884444
No 192
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=92.66 E-value=7.5 Score=35.10 Aligned_cols=115 Identities=14% Similarity=0.123 Sum_probs=65.8
Q ss_pred cHHHHHHHHHHcCCCEEEEecc-----cc-cc--ccCCCCCHHHHHHHHhcCCCCeeeeeee--ccCcHHhHHHHHhcCC
Q psy11600 19 NLHSESQNLLDSGADYLHLDVM-----DG-TF--VPNLTFGHPVVKCLRNKIPKAFFETHMM--VQNPQQWIEPMADANV 88 (277)
Q Consensus 19 ~l~~~~~~l~~~~~~~~h~Dim-----Dg-~f--vp~~~~g~~~v~~l~~~~~~~~~d~Hlm--v~~p~~~i~~l~~ag~ 88 (277)
...+-++.|.+.|+++ +.+- .+ .| .|...=..+.++.+++..++.++-+-+- ..+ .+.++...++|+
T Consensus 23 ~k~~i~~~L~~~Gv~~--iEvg~~~~~~~~~~~~~~~~~~~~e~i~~~~~~~~~~~~~~~~~~~~~~-~~~i~~a~~~g~ 99 (263)
T cd07943 23 QVRAIARALDAAGVPL--IEVGHGDGLGGSSLNYGFAAHTDEEYLEAAAEALKQAKLGVLLLPGIGT-VDDLKMAADLGV 99 (263)
T ss_pred HHHHHHHHHHHcCCCE--EEeecCCCCCCcccccCCCCCChHHHHHHHHHhccCCEEEEEecCCccC-HHHHHHHHHcCC
Confidence 3445567788888877 4443 10 11 1221113477888877656655543221 233 456888889999
Q ss_pred CeEEEeccCCC--CCHHHHHHHHhhCCCcc----cc----h---hhhhHHHHhcCCCeEEe
Q psy11600 89 DQYTFHVEPVD--NVPQVIRQIKEAGMKVG----QV----L---QDWIEPMADANVDQYTF 136 (277)
Q Consensus 89 d~i~~H~e~~d--~g~~~i~~i~~~~~~~~----d~----p---~~~i~~~~~~g~d~it~ 136 (277)
+++.+=.-..+ .....++.+|+....+. +. | .++++.+.++|+|.|++
T Consensus 100 ~~iri~~~~s~~~~~~~~i~~ak~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~d~i~l 160 (263)
T cd07943 100 DVVRVATHCTEADVSEQHIGAARKLGMDVVGFLMMSHMASPEELAEQAKLMESYGADCVYV 160 (263)
T ss_pred CEEEEEechhhHHHHHHHHHHHHHCCCeEEEEEEeccCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 99854222222 24556666666654321 11 3 44457778889999887
No 193
>PF04309 G3P_antiterm: Glycerol-3-phosphate responsive antiterminator; InterPro: IPR006699 Glycerol enters bacterial cells via facilitated diffusion, an energy-independent transport process catalysed by the glycerol transport facilitator GlpF, an integral membrane protein of the aquaporin family. Intracellular glycerol is usually converted to glycerol-3-P in an ATP-requiring phosphorylation reaction catalysed by glycerol kinase (GlpK). Glycerol-3-P, the inducer of the glpFK operon, is not a substrate for GlpF and hence remains entrapped in the cell where it is metabolized further. In some bacterial species, for example Bacillus firmus, glycerol-3-P activates the antiterminator GlpP []. In B. subtilis, glpF and glpK are organised in an operon followed by the glycerol-3-P dehydrogenase-encoding glpD gene and preceded by glpP coding for an antiterminator regulating the expression of glpFK, glpD and glpTQ. Their induction requires the inducer glycerol-3-P, which activates the antiterminator GlpP by allowing it to bind to the leader region of glpD and presumably also of glpFK and glpTQ mRNAs.; GO: 0006355 regulation of transcription, DNA-dependent, 0009607 response to biotic stimulus; PDB: 1VKF_A 3KTS_G.
Probab=92.59 E-value=0.12 Score=44.48 Aligned_cols=115 Identities=20% Similarity=0.371 Sum_probs=64.1
Q ss_pred ccccCcccHHHHHHHHHHcCCC-EEEEeccccccccCCCCCHHHHHHHHhcC-CCCeee-----------------eeee
Q psy11600 12 ILNSDLSNLHSESQNLLDSGAD-YLHLDVMDGTFVPNLTFGHPVVKCLRNKI-PKAFFE-----------------THMM 72 (277)
Q Consensus 12 ~~~~d~~~l~~~~~~l~~~~~~-~~h~DimDg~fvp~~~~g~~~v~~l~~~~-~~~~~d-----------------~Hlm 72 (277)
++..|..+|.+.++++.+.|-. ++|+|..+| ++-....++.|++.+ ++=-+. --+.
T Consensus 25 Ll~g~I~~l~~~v~~~~~~gK~vfVHiDli~G-----l~~D~~~i~~L~~~~~~dGIISTk~~~i~~Ak~~gl~tIqRiF 99 (175)
T PF04309_consen 25 LLTGDIGNLKDIVKRLKAAGKKVFVHIDLIEG-----LSRDEAGIEYLKEYGKPDGIISTKSNLIKRAKKLGLLTIQRIF 99 (175)
T ss_dssp E-SEECCCHHHHHHHHHHTT-EEEEECCGEET-----B-SSHHHHHHHHHTT--SEEEESSHHHHHHHHHTT-EEEEEEE
T ss_pred EEcCcHHHHHHHHHHHHHcCCEEEEEehhcCC-----CCCCHHHHHHHHHcCCCcEEEeCCHHHHHHHHHcCCEEEEEee
Confidence 6778999999999999988654 589999997 233455666666643 231111 1122
Q ss_pred ccC---cHHhHHHHHhcCCCeEEEeccCCCC-CHHHHHHHHhhCCCcccc-----hhhhhHHHHhcCCCeEE
Q psy11600 73 VQN---PQQWIEPMADANVDQYTFHVEPVDN-VPQVIRQIKEAGMKVGQV-----LQDWIEPMADANVDQYT 135 (277)
Q Consensus 73 v~~---p~~~i~~l~~ag~d~i~~H~e~~d~-g~~~i~~i~~~~~~~~d~-----p~~~i~~~~~~g~d~it 135 (277)
..| ...-++.+.+.++|.+ |++.| .|++++.+++.+..|+-. -.+-+....++||.-||
T Consensus 100 liDS~al~~~~~~i~~~~PD~v----EilPg~~p~vi~~i~~~~~~PiIAGGLI~~~e~v~~al~aGa~aVS 167 (175)
T PF04309_consen 100 LIDSSALETGIKQIEQSKPDAV----EILPGVMPKVIKKIREETNIPIIAGGLIRTKEDVEEALKAGADAVS 167 (175)
T ss_dssp -SSHHHHHHHHHHHHHHT-SEE----EEESCCHHHHHCCCCCCCSS-EEEESS--SHHHHHHHCCTTCEEEE
T ss_pred eecHHHHHHHHHHHhhcCCCEE----EEchHHHHHHHHHHHHhcCCCEEeecccCCHHHHHHHHHcCCEEEE
Confidence 222 2222445555555554 44444 466666666665555433 34455556666666665
No 194
>PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase
Probab=92.58 E-value=1.5 Score=43.45 Aligned_cols=170 Identities=12% Similarity=0.099 Sum_probs=93.6
Q ss_pred HHhHHHHHhcCCCeEEEeccCCCC-CHH---HHHHHHhhCCC--cccchhhhhHHHHhcCCCeEEeecCCCCChHHHHHH
Q psy11600 77 QQWIEPMADANVDQYTFHVEPVDN-VPQ---VIRQIKEAGMK--VGQVLQDWIEPMADANVDQYTFHVEPVDNVPQVIRQ 150 (277)
Q Consensus 77 ~~~i~~l~~ag~d~i~~H~e~~d~-g~~---~i~~i~~~~~~--~~d~p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~ 150 (277)
.+.++.+.++|+.++ ++..-+. ... .++.+++.+.. .-.+.-++.+...+.|+|. +|+. ...-....
T Consensus 310 ~~~l~~~l~~Gv~~v--qlR~k~~~~~~~~~~a~~l~~~~~~~~~~liind~~~lA~~~~adG--vHl~---~~d~~~~~ 382 (502)
T PLN02898 310 VDAVRAAIEGGATIV--QLREKEAETREFIEEAKACLAICRSYGVPLLINDRVDVALACDADG--VHLG---QSDMPVRL 382 (502)
T ss_pred HHHHHHHHHcCCCEE--EEccCCCCHHHHHHHHHHHHHHHHHhCCEEEEcChHHHHHhcCCCE--EEeC---hHhcCHHH
Confidence 346888889999998 6653322 222 33333333321 1122446677778889985 5664 21111222
Q ss_pred HHH-hCCccceeeCCCCCHHhHHHH-HhhcCceEEEEecCCCCCchhhhhhhhhHHHHHhhCCCccEEEeCCCCcCcHHH
Q psy11600 151 IKE-AGMKVGLAIKPKTPVDVIAEY-IESADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDE 228 (277)
Q Consensus 151 I~~-~g~~~g~~i~p~t~~~~i~~~-i~~~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~~~~~i~vdGgV~~~tv~~ 228 (277)
.++ .+...-+|....+. +.+... -..+|++.+=.+-|..+-...-+--++.++++.+. .++-+...|||+.+++.+
T Consensus 383 ~r~~~~~~~~iG~S~h~~-~e~~~a~~~gadyi~~gpif~t~tk~~~~~~g~~~~~~~~~~-~~~Pv~aiGGI~~~~~~~ 460 (502)
T PLN02898 383 ARSLLGPGKIIGVSCKTP-EQAEQAWKDGADYIGCGGVFPTNTKANNKTIGLDGLREVCEA-SKLPVVAIGGISASNAAS 460 (502)
T ss_pred HHHhcCCCCEEEEeCCCH-HHHHHHhhcCCCEEEECCeecCCCCCCCCCCCHHHHHHHHHc-CCCCEEEECCCCHHHHHH
Confidence 333 23334566666554 333333 34578865322333211000001113445554432 356788899999999999
Q ss_pred HHHccCC---C---CCcccc-cCHHHHHHHHHhh
Q psy11600 229 CAKCLTG---F---GGQKFM-QDMMPKVKWLREN 255 (277)
Q Consensus 229 ~~~~gpg---~---ggq~F~-~~~~~kI~~l~~~ 255 (277)
+.++|++ + ++..+. ++..+.++++++.
T Consensus 461 ~~~~G~~~~~gvav~~~i~~~~d~~~~~~~~~~~ 494 (502)
T PLN02898 461 VMESGAPNLKGVAVVSALFDQEDVLKATRKLHAI 494 (502)
T ss_pred HHHcCCCcCceEEEEeHHhcCCCHHHHHHHHHHH
Confidence 9999987 4 566665 5778888877764
No 195
>PRK12290 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=92.56 E-value=1.8 Score=42.38 Aligned_cols=176 Identities=9% Similarity=0.121 Sum_probs=95.9
Q ss_pred ccCcHHhHHHHHhcCCCeEEEeccCCCC-CHHHH---HHHHhhCCC--cccchhhhhHHHHhcCCCeEEeecCCCCChHH
Q psy11600 73 VQNPQQWIEPMADANVDQYTFHVEPVDN-VPQVI---RQIKEAGMK--VGQVLQDWIEPMADANVDQYTFHVEPVDNVPQ 146 (277)
Q Consensus 73 v~~p~~~i~~l~~ag~d~i~~H~e~~d~-g~~~i---~~i~~~~~~--~~d~p~~~i~~~~~~g~d~it~H~E~~~~~~~ 146 (277)
|.+..++++.+.++|++++ .+-.-+. ...+. +.+++.+.. .-...-++++.-.+.||+.|-+-.| +..
T Consensus 216 Vtd~~~~ve~aL~aGv~~V--QLReK~ls~~el~~la~~l~~l~~~~gv~LiIND~~dlAl~~gAdGVHLGQe---DL~- 289 (437)
T PRK12290 216 VVDDVEWIERLLPLGINTV--QLRIKDPQQADLEQQIIRAIALGREYNAQVFINDYWQLAIKHQAYGVHLGQE---DLE- 289 (437)
T ss_pred EeCCHHHHHHHHhCCCCEE--EEeCCCCCHHHHHHHHHHHHHHHHHhCCEEEEECHHHHHHHcCCCEEEcChH---Hcc-
Confidence 4444568999999999998 6654433 22333 333333321 1111345677778889986544333 322
Q ss_pred HHHHHHHh-CCccceeeCCCCCHHhHHHHHhhcCceEEEEecCCCCCc-hhhhhhhhhHHHHHhhC--------CCccEE
Q psy11600 147 VIRQIKEA-GMKVGLAIKPKTPVDVIAEYIESADLVLIMTVEPGFGGQ-KFMQDMMPKVKWLRENY--------PTLNIE 216 (277)
Q Consensus 147 ~~~~I~~~-g~~~g~~i~p~t~~~~i~~~i~~~d~vl~mav~Pgt~gq-~~~~~~l~kI~~l~~~~--------~~~~i~ 216 (277)
....|++ |...-+|+...+.-+.....-..+|++.+=.+-|-+.=+ ..-+-=++.++++.+.. ..+-+.
T Consensus 290 -~~~aR~ilg~~~iIGvStHs~eEl~~A~~~gaDYI~lGPIFpT~TK~~~~~p~Gl~~L~~~~~l~~~~~~~~~~~iPVV 368 (437)
T PRK12290 290 -EANLAQLTDAGIRLGLSTHGYYELLRIVQIQPSYIALGHIFPTTTKQMPSKPQGLVRLALYQKLIDTIPYQGQTGFPTV 368 (437)
T ss_pred -hhhhhhhcCCCCEEEEecCCHHHHHHHhhcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHHhhhccccccCCCCEE
Confidence 1122322 222345555544322222222346876544444422110 11112244454444433 257889
Q ss_pred EeCCCCcCcHHHHHHccCCC---CCcccc-cCHHHHHHHHHhh
Q psy11600 217 VDGGVGPNTIDECAKCLTGF---GGQKFM-QDMMPKVKWLREN 255 (277)
Q Consensus 217 vdGgV~~~tv~~~~~~gpg~---ggq~F~-~~~~~kI~~l~~~ 255 (277)
..|||+..++.++.++|++. -+..+. ++..+.++++++.
T Consensus 369 AIGGI~~~Ni~~vl~aGa~GVAVVSAI~~A~DP~aa~~~l~~~ 411 (437)
T PRK12290 369 AIGGIDQSNAEQVWQCGVSSLAVVRAITLAEDPQLVIEFFDQV 411 (437)
T ss_pred EECCcCHHHHHHHHHcCCCEEEEehHhhcCCCHHHHHHHHHHH
Confidence 99999999999999999985 334444 4677888888764
No 196
>PRK09517 multifunctional thiamine-phosphate pyrophosphorylase/synthase/phosphomethylpyrimidine kinase; Provisional
Probab=92.55 E-value=1.6 Score=45.75 Aligned_cols=53 Identities=15% Similarity=0.028 Sum_probs=37.7
Q ss_pred hhHHHHHhhCC--CccEEEeCCCCcCcHHHHHHccCCC---CCcccc-cCHHHHHHHHH
Q psy11600 201 PKVKWLRENYP--TLNIEVDGGVGPNTIDECAKCLTGF---GGQKFM-QDMMPKVKWLR 253 (277)
Q Consensus 201 ~kI~~l~~~~~--~~~i~vdGgV~~~tv~~~~~~gpg~---ggq~F~-~~~~~kI~~l~ 253 (277)
+.++++.+... .+-+...|||+.+++.++.++|+++ .+..+. ++..+.+++++
T Consensus 153 ~~l~~~~~~~~~~~iPv~AiGGI~~~~~~~~~~~Ga~giAvisai~~a~d~~~a~~~l~ 211 (755)
T PRK09517 153 DGIAEIAAVAQDHGIASVAIGGVGLRNAAELAATGIDGLCVVSAIMAAANPAAAARELR 211 (755)
T ss_pred HHHHHHHHhcCcCCCCEEEECCCCHHHHHHHHHcCCCEEEEehHhhCCCCHHHHHHHHH
Confidence 44555555554 3778899999999999999999996 344443 45666666555
No 197
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=92.54 E-value=2.5 Score=36.40 Aligned_cols=100 Identities=8% Similarity=0.032 Sum_probs=63.2
Q ss_pred HHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEEeccCCCCC
Q psy11600 22 SESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTFHVEPVDNV 101 (277)
Q Consensus 22 ~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~H~e~~d~g 101 (277)
++++...+.|+|.+|. |. ++++.++.-+.+ +.+.-.. +.+|.+ +....+.|+||+-|..-..-+|
T Consensus 75 d~~~~A~~~gAdgv~~--------p~--~~~~~~~~~~~~--~~~~i~G--~~t~~e-~~~A~~~Gadyv~~Fpt~~~~G 139 (187)
T PRK07455 75 EDLEEAIAAGAQFCFT--------PH--VDPELIEAAVAQ--DIPIIPG--ALTPTE-IVTAWQAGASCVKVFPVQAVGG 139 (187)
T ss_pred HHHHHHHHcCCCEEEC--------CC--CCHHHHHHHHHc--CCCEEcC--cCCHHH-HHHHHHCCCCEEEECcCCcccC
Confidence 6777778889998753 33 344444433322 3333344 667766 4455678999998843222358
Q ss_pred HHHHHHHHhhCC-Ccccc----hhhhhHHHHhcCCCeEEe
Q psy11600 102 PQVIRQIKEAGM-KVGQV----LQDWIEPMADANVDQYTF 136 (277)
Q Consensus 102 ~~~i~~i~~~~~-~~~d~----p~~~i~~~~~~g~d~it~ 136 (277)
+..+++++.... .|+-. ..+-++.+.++|++.+.+
T Consensus 140 ~~~l~~~~~~~~~ipvvaiGGI~~~n~~~~l~aGa~~vav 179 (187)
T PRK07455 140 ADYIKSLQGPLGHIPLIPTGGVTLENAQAFIQAGAIAVGL 179 (187)
T ss_pred HHHHHHHHhhCCCCcEEEeCCCCHHHHHHHHHCCCeEEEE
Confidence 999999998763 45432 455666677788887765
No 198
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=92.51 E-value=5.9 Score=36.55 Aligned_cols=67 Identities=19% Similarity=0.376 Sum_probs=39.4
Q ss_pred HHHHHHHHHcCCCEEEEeccccccc-----cCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEEec
Q psy11600 21 HSESQNLLDSGADYLHLDVMDGTFV-----PNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTFHV 95 (277)
Q Consensus 21 ~~~~~~l~~~~~~~~h~DimDg~fv-----p~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~H~ 95 (277)
-+-++.|.+.|++. +.+ |.|+ |.+.--.+.++.+++. ++..+-+ ++.| .+.++...++|++++++=+
T Consensus 29 ~~ia~~L~~~Gv~~--IEv--gsf~~p~~~p~~~d~~e~~~~l~~~-~~~~~~~--l~~~-~~~ie~A~~~g~~~v~i~~ 100 (287)
T PRK05692 29 IALIDRLSAAGLSY--IEV--ASFVSPKWVPQMADAAEVMAGIQRR-PGVTYAA--LTPN-LKGLEAALAAGADEVAVFA 100 (287)
T ss_pred HHHHHHHHHcCCCE--EEe--CCCcCcccccccccHHHHHHhhhcc-CCCeEEE--EecC-HHHHHHHHHcCCCEEEEEE
Confidence 34556677788776 333 4554 4433234667777653 5544432 3444 3457888899999985443
No 199
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=92.50 E-value=0.54 Score=43.79 Aligned_cols=128 Identities=18% Similarity=0.148 Sum_probs=79.4
Q ss_pred eEeeeccccCcccHHHHHHHHHHcCCCEEEEecccc---ccccCCCCC----------HHHHHHHHhcCCCCeeeeeeec
Q psy11600 7 MIGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDG---TFVPNLTFG----------HPVVKCLRNKIPKAFFETHMMV 73 (277)
Q Consensus 7 ~~~~s~~~~d~~~l~~~~~~l~~~~~~~~h~DimDg---~fvp~~~~g----------~~~v~~l~~~~~~~~~d~Hlmv 73 (277)
.+.+-|+..|...+.+..+.+.+.|+|. +|+-=| .+|-.=.+| -++|+++++. .++|+.+=+-+
T Consensus 55 p~~~Ql~g~~~~~~~~aa~~~~~~~~~~--IDlN~GCP~~~v~~~g~Ga~Ll~~p~~~~~iv~~~~~~-~~~pvsvKiR~ 131 (309)
T PF01207_consen 55 PLIVQLFGNDPEDLAEAAEIVAELGFDG--IDLNMGCPAPKVTKGGAGAALLKDPDLLAEIVKAVRKA-VPIPVSVKIRL 131 (309)
T ss_dssp TEEEEEE-S-HHHHHHHHHHHCCTT-SE--EEEEE---SHHHHHCT-GGGGGC-HHHHHHHHHHHHHH--SSEEEEEEES
T ss_pred ceeEEEeeccHHHHHHHHHhhhccCCcE--EeccCCCCHHHHhcCCcChhhhcChHHhhHHHHhhhcc-cccceEEeccc
Confidence 4677889999999999999988867777 776332 111111122 4677888876 66888887777
Q ss_pred cC------cHHhHHHHHhcCCCeEEEeccCCC----C--CHHHHHHHHhhCCCcc----cc--hhhhhHHHHhcCCCeEE
Q psy11600 74 QN------PQQWIEPMADANVDQYTFHVEPVD----N--VPQVIRQIKEAGMKVG----QV--LQDWIEPMADANVDQYT 135 (277)
Q Consensus 74 ~~------p~~~i~~l~~ag~d~i~~H~e~~d----~--g~~~i~~i~~~~~~~~----d~--p~~~i~~~~~~g~d~it 135 (277)
.. ..+.++.+.++|++.+|+|.-.-. + -.+.|+.+++....|+ |+ +++.-+.+...|+|.|-
T Consensus 132 g~~~~~~~~~~~~~~l~~~G~~~i~vH~Rt~~q~~~~~a~w~~i~~i~~~~~ipvi~NGdI~s~~d~~~~~~~tg~dgvM 211 (309)
T PF01207_consen 132 GWDDSPEETIEFARILEDAGVSAITVHGRTRKQRYKGPADWEAIAEIKEALPIPVIANGDIFSPEDAERMLEQTGADGVM 211 (309)
T ss_dssp ECT--CHHHHHHHHHHHHTT--EEEEECS-TTCCCTS---HHHHHHCHHC-TSEEEEESS--SHHHHHHHCCCH-SSEEE
T ss_pred ccccchhHHHHHHHHhhhcccceEEEecCchhhcCCcccchHHHHHHhhcccceeEEcCccCCHHHHHHHHHhcCCcEEE
Confidence 54 345688889999999999976421 1 4556677776666554 22 67776666666888777
Q ss_pred ee
Q psy11600 136 FH 137 (277)
Q Consensus 136 ~H 137 (277)
+-
T Consensus 212 ig 213 (309)
T PF01207_consen 212 IG 213 (309)
T ss_dssp ES
T ss_pred Ec
Confidence 63
No 200
>PRK05222 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase; Provisional
Probab=92.41 E-value=2.1 Score=44.84 Aligned_cols=76 Identities=18% Similarity=0.260 Sum_probs=49.8
Q ss_pred cHHHHHHHHHHcCCCEEEEeccccccccCCC--------CCHHHHHHHHhcCC----CCeeeeeeeccCcHHhHHHHHhc
Q psy11600 19 NLHSESQNLLDSGADYLHLDVMDGTFVPNLT--------FGHPVVKCLRNKIP----KAFFETHMMVQNPQQWIEPMADA 86 (277)
Q Consensus 19 ~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~--------~g~~~v~~l~~~~~----~~~~d~Hlmv~~p~~~i~~l~~a 86 (277)
-+.+|++.|+++|++++.+|==. +.-... +=...++.++.... +..+..|+--.|....++.+.+.
T Consensus 582 al~~Ev~~L~~aG~~~IQiDEPa--l~e~~~~~~~~~~~~l~~~v~a~n~a~~~~~~~~~i~tH~C~g~~~~i~~~i~~l 659 (758)
T PRK05222 582 AIRDEVLDLEAAGIKIIQIDEPA--LREGLPLRRSDWDAYLDWAVEAFRLATSGVKDETQIHTHMCYSEFNDIIDAIAAL 659 (758)
T ss_pred HHHHHHHHHHHcCCCEEEeeCch--hhhcCcccccCHHHHHHHHHHHHHHHHcCCCCCCEEEEEEeccChHHHHHHHHhC
Confidence 46688999999999999988322 211111 00223455554332 35677787777888888888888
Q ss_pred CCCeEEEeccCC
Q psy11600 87 NVDQYTFHVEPV 98 (277)
Q Consensus 87 g~d~i~~H~e~~ 98 (277)
.+|.+ ++|..
T Consensus 660 ~vD~~--~lE~~ 669 (758)
T PRK05222 660 DADVI--SIETS 669 (758)
T ss_pred CCCEE--EEEec
Confidence 99988 66643
No 201
>TIGR01371 met_syn_B12ind 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase. This model describes the cobalamin-independent methionine synthase. A family of uncharacterized archaeal proteins is homologous to the C-terminal region of this family. That family is excluded from this model but, along with this family, belongs to pfam model pfam01717.
Probab=92.41 E-value=6.7 Score=41.12 Aligned_cols=77 Identities=21% Similarity=0.321 Sum_probs=52.6
Q ss_pred cHHHHHHHHHHcCCCEEEEeccccccccCCCC--------CHHHHHHHHh---cCC-CCeeeeeeeccCcHHhHHHHHhc
Q psy11600 19 NLHSESQNLLDSGADYLHLDVMDGTFVPNLTF--------GHPVVKCLRN---KIP-KAFFETHMMVQNPQQWIEPMADA 86 (277)
Q Consensus 19 ~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~--------g~~~v~~l~~---~~~-~~~~d~Hlmv~~p~~~i~~l~~a 86 (277)
.+.++++.|+++|++++.+| |-.+.-.+.. -...++.++. ..+ +..+.+|+--.|..+.++.+.+.
T Consensus 576 a~~~ev~~L~~aG~~~IQID--EPaL~~~l~~~~~~~~~~l~~a~~~~~~~~~~v~~~~~I~~H~C~g~~~~i~~~l~~l 653 (750)
T TIGR01371 576 AIRDEVLDLEEAGIKIIQID--EPALREGLPLRKSDWPEYLDWAVEAFRLATSGVKDETQIHTHMCYSEFNEIIESIADL 653 (750)
T ss_pred HHHHHHHHHHHcCCCEEEEe--CchhhhcCCccchhHHHHHHHHHHHHHHHHhCCCCCCEEEEEEECCCcHHHHHHHHhC
Confidence 35688999999999999888 3222211111 1245566654 233 46788888888888888888889
Q ss_pred CCCeEEEeccCCC
Q psy11600 87 NVDQYTFHVEPVD 99 (277)
Q Consensus 87 g~d~i~~H~e~~d 99 (277)
.+|.+ |+|...
T Consensus 654 ~vD~i--~lE~~r 664 (750)
T TIGR01371 654 DADVI--SIEASR 664 (750)
T ss_pred CCCEE--EEEecC
Confidence 99999 666543
No 202
>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase. This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.
Probab=92.35 E-value=8.1 Score=34.76 Aligned_cols=88 Identities=11% Similarity=0.060 Sum_probs=61.6
Q ss_pred cHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEEeccCC
Q psy11600 19 NLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTFHVEPV 98 (277)
Q Consensus 19 ~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~H~e~~ 98 (277)
+..+..+...+.|.+++|++..||.. .-.-..++++++.+. ...|+.+.==+.+.+ .++.+.++|++.+.+=-.+.
T Consensus 32 ~p~~~a~~~~~~g~~~lhivDLd~a~--g~~~n~~~i~~i~~~-~~~~v~vgGGIrs~e-~~~~~l~~Ga~~vvigT~a~ 107 (243)
T TIGR01919 32 SLESAAKWWEQGGAEWIHLVDLDAAF--GGGNNEMMLEEVVKL-LVVVEELSGGRRDDS-SLRAALTGGRARVNGGTAAL 107 (243)
T ss_pred CHHHHHHHHHhCCCeEEEEEECCCCC--CCcchHHHHHHHHHH-CCCCEEEcCCCCCHH-HHHHHHHcCCCEEEECchhh
Confidence 44567777888999999999999876 233456789999876 445555555555544 56677889999996544433
Q ss_pred CCCHHHHHHHHhh
Q psy11600 99 DNVPQVIRQIKEA 111 (277)
Q Consensus 99 d~g~~~i~~i~~~ 111 (277)
. .|.+++.+.+.
T Consensus 108 ~-~p~~~~~~~~~ 119 (243)
T TIGR01919 108 E-NPWWAAAVIRY 119 (243)
T ss_pred C-CHHHHHHHHHH
Confidence 2 57777777654
No 203
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=92.30 E-value=1.1 Score=40.85 Aligned_cols=169 Identities=12% Similarity=0.115 Sum_probs=95.9
Q ss_pred cCcHHhHHHHHhcCCCeEEEeccCCC--CCHHHHHHHHhhCCCcccc-----hhhhhHHHHhcCCCeEEeecCCCCCh--
Q psy11600 74 QNPQQWIEPMADANVDQYTFHVEPVD--NVPQVIRQIKEAGMKVGQV-----LQDWIEPMADANVDQYTFHVEPVDNV-- 144 (277)
Q Consensus 74 ~~p~~~i~~l~~ag~d~i~~H~e~~d--~g~~~i~~i~~~~~~~~d~-----p~~~i~~~~~~g~d~it~H~E~~~~~-- 144 (277)
.+|.++...+.++||+.+++.-|..- |+...++++|+.+..|+.. -...|.+-..+|||.|.+-+. .+
T Consensus 68 ~d~~~~a~~y~~~GA~aiSVlTe~~~F~Gs~~dL~~v~~~~~~PvL~KDFIid~~QI~eA~~~GADaVLLI~~---~L~~ 144 (254)
T PF00218_consen 68 FDPAEIAKAYEEAGAAAISVLTEPKFFGGSLEDLRAVRKAVDLPVLRKDFIIDPYQIYEARAAGADAVLLIAA---ILSD 144 (254)
T ss_dssp -SHHHHHHHHHHTT-SEEEEE--SCCCHHHHHHHHHHHHHSSS-EEEES---SHHHHHHHHHTT-SEEEEEGG---GSGH
T ss_pred CCHHHHHHHHHhcCCCEEEEECCCCCCCCCHHHHHHHHHHhCCCcccccCCCCHHHHHHHHHcCCCEeehhHH---hCCH
Confidence 37888999999999999999988753 4889999999998887754 345667778999999999875 33
Q ss_pred ---HHHHHHHHHhCCccceeeCCCCCHHhHHHHHhhcCceEEEEecCCCCCchhhhhhhhhHHHHHhhCC-CccEEEeCC
Q psy11600 145 ---PQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYP-TLNIEVDGG 220 (277)
Q Consensus 145 ---~~~~~~I~~~g~~~g~~i~p~t~~~~i~~~i~~~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~~-~~~i~vdGg 220 (277)
.++.+..+..|+.+=+-+. ..++++..+ .++..+ +.||-- ....| +--++.-..+.+..| ++-.+.-+|
T Consensus 145 ~~l~~l~~~a~~lGle~lVEVh---~~~El~~al-~~~a~i-iGINnR-dL~tf-~vd~~~~~~l~~~ip~~~~~iseSG 217 (254)
T PF00218_consen 145 DQLEELLELAHSLGLEALVEVH---NEEELERAL-EAGADI-IGINNR-DLKTF-EVDLNRTEELAPLIPKDVIVISESG 217 (254)
T ss_dssp HHHHHHHHHHHHTT-EEEEEES---SHHHHHHHH-HTT-SE-EEEESB-CTTTC-CBHTHHHHHHHCHSHTTSEEEEESS
T ss_pred HHHHHHHHHHHHcCCCeEEEEC---CHHHHHHHH-HcCCCE-EEEeCc-cccCc-ccChHHHHHHHhhCccceeEEeecC
Confidence 2344444455543222221 223444444 223222 334421 11111 112344556666665 455666788
Q ss_pred CC-cCcHHHHHHccCCC---CCcccc-cCHHHHHHHH
Q psy11600 221 VG-PNTIDECAKCLTGF---GGQKFM-QDMMPKVKWL 252 (277)
Q Consensus 221 V~-~~tv~~~~~~gpg~---ggq~F~-~~~~~kI~~l 252 (277)
|. .+.+..+.++|.+. |...+. ++.-+++++|
T Consensus 218 I~~~~d~~~l~~~G~davLVGe~lm~~~d~~~~~~~L 254 (254)
T PF00218_consen 218 IKTPEDARRLARAGADAVLVGEALMRSPDPGEALREL 254 (254)
T ss_dssp -SSHHHHHHHCTTT-SEEEESHHHHTSSSHHHHHHHH
T ss_pred CCCHHHHHHHHHCCCCEEEECHHHhCCCCHHHHHhcC
Confidence 86 35555666666663 444444 4677777664
No 204
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=92.20 E-value=4.5 Score=35.65 Aligned_cols=119 Identities=13% Similarity=0.222 Sum_probs=73.8
Q ss_pred eeccccCcccHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCC--Ceeeeeeec--------------
Q psy11600 10 PSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPK--AFFETHMMV-------------- 73 (277)
Q Consensus 10 ~s~~~~d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~--~~~d~Hlmv-------------- 73 (277)
|=+++.+...+++ ++.+.+.|++. +++--. .. -.++.++++.+.++. +.+.+...-
T Consensus 76 pv~~~ggi~~~~d-~~~~~~~G~~~--vilg~~-~l----~~~~~~~~~~~~~~~~~i~vsld~~~~~~~~~~~v~~~~~ 147 (232)
T TIGR03572 76 PLTVGGGIRSLED-AKKLLSLGADK--VSINTA-AL----ENPDLIEEAARRFGSQCVVVSIDVKKELDGSDYKVYSDNG 147 (232)
T ss_pred CEEEECCCCCHHH-HHHHHHcCCCE--EEEChh-Hh----cCHHHHHHHHHHcCCceEEEEEEeccCCCCCcEEEEECCC
Confidence 4455666666654 44566778998 544322 22 257788888887753 333443322
Q ss_pred -----cCcHHhHHHHHhcCCCeEEEeccCCCC-----CHHHHHHHHhhCCCcccc------hhhhhHHHHhcCCCeEEe
Q psy11600 74 -----QNPQQWIEPMADANVDQYTFHVEPVDN-----VPQVIRQIKEAGMKVGQV------LQDWIEPMADANVDQYTF 136 (277)
Q Consensus 74 -----~~p~~~i~~l~~ag~d~i~~H~e~~d~-----g~~~i~~i~~~~~~~~d~------p~~~i~~~~~~g~d~it~ 136 (277)
.++.+.++.+.++|++.+++|--..++ ..++++++++....|+-. +++..+.+.+.||+.+.+
T Consensus 148 ~~~~~~~~~~~~~~~~~~G~d~i~i~~i~~~g~~~g~~~~~~~~i~~~~~ipvia~GGi~s~~di~~~l~~~gadgV~v 226 (232)
T TIGR03572 148 RRATGRDPVEWAREAEQLGAGEILLNSIDRDGTMKGYDLELIKTVSDAVSIPVIALGGAGSLDDLVEVALEAGASAVAA 226 (232)
T ss_pred cccCCCCHHHHHHHHHHcCCCEEEEeCCCccCCcCCCCHHHHHHHHhhCCCCEEEECCCCCHHHHHHHHHHcCCCEEEE
Confidence 235677899999999999998521221 467788888876655533 444444467777777665
No 205
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=92.11 E-value=4.1 Score=36.96 Aligned_cols=166 Identities=12% Similarity=0.050 Sum_probs=94.3
Q ss_pred CcHHhHHHHHhcCCCeEEEeccCC--CCCHHHHHHHHhhCCCcccc-----hhhhhHHHHhcCCCeEEeecCCCCChH--
Q psy11600 75 NPQQWIEPMADANVDQYTFHVEPV--DNVPQVIRQIKEAGMKVGQV-----LQDWIEPMADANVDQYTFHVEPVDNVP-- 145 (277)
Q Consensus 75 ~p~~~i~~l~~ag~d~i~~H~e~~--d~g~~~i~~i~~~~~~~~d~-----p~~~i~~~~~~g~d~it~H~E~~~~~~-- 145 (277)
+|.++...+.++||..+++.-|.. .|..+.++++|+....|+.. -...+.+-..+|||-|.+++. ...
T Consensus 62 d~~~~A~~y~~~GA~aISVlTe~~~F~Gs~~~l~~v~~~v~~PvL~KDFIid~~QI~ea~~~GADavLLI~~---~L~~~ 138 (247)
T PRK13957 62 HPVQIAKTYETLGASAISVLTDQSYFGGSLEDLKSVSSELKIPVLRKDFILDEIQIREARAFGASAILLIVR---ILTPS 138 (247)
T ss_pred CHHHHHHHHHHCCCcEEEEEcCCCcCCCCHHHHHHHHHhcCCCEEeccccCCHHHHHHHHHcCCCEEEeEHh---hCCHH
Confidence 788899999999999999998864 45899999999998877754 234455555599999999986 332
Q ss_pred HHHHHHHHhCCccceeeCCCCCH---HhHHHHHhhcCceEEEEecCCCCCchhhhhhhhhHHHHHhhCCC-ccEEEeCCC
Q psy11600 146 QVIRQIKEAGMKVGLAIKPKTPV---DVIAEYIESADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPT-LNIEVDGGV 221 (277)
Q Consensus 146 ~~~~~I~~~g~~~g~~i~p~t~~---~~i~~~i~~~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~~~-~~i~vdGgV 221 (277)
++.++++.+ ..+|+.|=+-+ +++...+. .+.. ++.||.-- ...| +--++....+.++.|+ .-...-+|+
T Consensus 139 ~l~~l~~~a---~~lGle~LVEVh~~~El~~a~~-~ga~-iiGINnRd-L~t~-~vd~~~~~~L~~~ip~~~~~IsESGI 211 (247)
T PRK13957 139 QIKSFLKHA---SSLGMDVLVEVHTEDEAKLALD-CGAE-IIGINTRD-LDTF-QIHQNLVEEVAAFLPPNIVKVGESGI 211 (247)
T ss_pred HHHHHHHHH---HHcCCceEEEECCHHHHHHHHh-CCCC-EEEEeCCC-Cccc-eECHHHHHHHHhhCCCCcEEEEcCCC
Confidence 333344332 34444443322 23333333 2222 24455421 1111 1113445566666764 333345777
Q ss_pred Cc-CcHHHHHHccCCC---CCcccc-cCHHHHHHH
Q psy11600 222 GP-NTIDECAKCLTGF---GGQKFM-QDMMPKVKW 251 (277)
Q Consensus 222 ~~-~tv~~~~~~gpg~---ggq~F~-~~~~~kI~~ 251 (277)
.- +.+..+..+ .+. |...+. ++..+.+++
T Consensus 212 ~t~~d~~~l~~~-~davLvG~~lm~~~d~~~~~~~ 245 (247)
T PRK13957 212 ESRSDLDKFRKL-VDAALIGTYFMEKKDIRKAWLS 245 (247)
T ss_pred CCHHHHHHHHHh-CCEEEECHHHhCCCCHHHHHHH
Confidence 52 333444443 442 555554 345555544
No 206
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=92.06 E-value=2 Score=38.36 Aligned_cols=120 Identities=17% Similarity=0.207 Sum_probs=73.9
Q ss_pred ceEeeeccccCcccHHHHHHHHHHcCCCEEEEeccccccccCC-----CCC----------HHHHHHHHhcCCCCeeeee
Q psy11600 6 CMIGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNL-----TFG----------HPVVKCLRNKIPKAFFETH 70 (277)
Q Consensus 6 ~~~~~s~~~~d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~-----~~g----------~~~v~~l~~~~~~~~~d~H 70 (277)
..+..+|...|...+.+..+.+++. .+. +|+-=| +|+- ..| .++++.+|+ .++|+.+=
T Consensus 73 ~p~~vqi~g~~~~~~~~aa~~~~~~-~~~--ielN~g--CP~~~v~~~g~G~~Ll~~p~~l~eiv~avr~--~~~pVsvK 145 (233)
T cd02911 73 VLVGVNVRSSSLEPLLNAAALVAKN-AAI--LEINAH--CRQPEMVEAGAGEALLKDPERLSEFIKALKE--TGVPVSVK 145 (233)
T ss_pred CeEEEEecCCCHHHHHHHHHHHhhc-CCE--EEEECC--CCcHHHhcCCcchHHcCCHHHHHHHHHHHHh--cCCCEEEE
Confidence 3578899999999888888888763 454 444222 2221 222 356777776 36777665
Q ss_pred eec---cCcHHhHHHHHhcCCCeEEEeccCCCCC----HHHHHHHHhhCCCcc----cc--hhhhhHHHHhcCCCeEEee
Q psy11600 71 MMV---QNPQQWIEPMADANVDQYTFHVEPVDNV----PQVIRQIKEAGMKVG----QV--LQDWIEPMADANVDQYTFH 137 (277)
Q Consensus 71 lmv---~~p~~~i~~l~~ag~d~i~~H~e~~d~g----~~~i~~i~~~~~~~~----d~--p~~~i~~~~~~g~d~it~H 137 (277)
+=. .+..+..+.+.++|+|++ |.+.+..+ ...|++++ ...|+ ++ +++..+.+. +|||.|.+-
T Consensus 146 ir~g~~~~~~~la~~l~~aG~d~i--hv~~~~~g~~ad~~~I~~i~--~~ipVIgnGgI~s~eda~~~l~-~GaD~VmiG 220 (233)
T cd02911 146 IRAGVDVDDEELARLIEKAGADII--HVDAMDPGNHADLKKIRDIS--TELFIIGNNSVTTIESAKEMFS-YGADMVSVA 220 (233)
T ss_pred EcCCcCcCHHHHHHHHHHhCCCEE--EECcCCCCCCCcHHHHHHhc--CCCEEEEECCcCCHHHHHHHHH-cCCCEEEEc
Confidence 543 245566788999999988 66554432 45555554 33333 22 555555554 788887774
No 207
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=91.98 E-value=7.5 Score=35.38 Aligned_cols=89 Identities=25% Similarity=0.357 Sum_probs=53.6
Q ss_pred cccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEEeccCCCC----------CHHHHHHHH
Q psy11600 40 MDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTFHVEPVDN----------VPQVIRQIK 109 (277)
Q Consensus 40 mDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~H~e~~d~----------g~~~i~~i~ 109 (277)
-||.+.||..|+.+...++- +.+.++|+++|-+=+=.... ..+.+++++
T Consensus 7 RDG~q~~~~~f~~~~~~~ia---------------------~~L~~~GVd~IEvG~~~~~~~~~~~~~~~~~~~~~~~i~ 65 (266)
T cd07944 7 RDGGYVNNWDFGDEFVKAIY---------------------RALAAAGIDYVEIGYRSSPEKEFKGKSAFCDDEFLRRLL 65 (266)
T ss_pred ccCccccCccCCHHHHHHHH---------------------HHHHHCCCCEEEeecCCCCccccCCCccCCCHHHHHHHH
Confidence 47889999999887666554 35777788877332111110 146666666
Q ss_pred hhCC--Ccccc-------hhhhhHHHHhcCCCe--EEeecCCCCChHHHHHHHH
Q psy11600 110 EAGM--KVGQV-------LQDWIEPMADANVDQ--YTFHVEPVDNVPQVIRQIK 152 (277)
Q Consensus 110 ~~~~--~~~d~-------p~~~i~~~~~~g~d~--it~H~E~~~~~~~~~~~I~ 152 (277)
+... ..+-+ ..+.++...++|++. ++++.+ ......+.++
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~l~~a~~~gv~~iri~~~~~---~~~~~~~~i~ 116 (266)
T cd07944 66 GDSKGNTKIAVMVDYGNDDIDLLEPASGSVVDMIRVAFHKH---EFDEALPLIK 116 (266)
T ss_pred hhhccCCEEEEEECCCCCCHHHHHHHhcCCcCEEEEecccc---cHHHHHHHHH
Confidence 5431 12211 246788888999997 666665 5555444444
No 208
>TIGR00423 radical SAM domain protein, CofH subfamily. This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.
Probab=91.97 E-value=5.6 Score=36.84 Aligned_cols=72 Identities=14% Similarity=0.322 Sum_probs=47.3
Q ss_pred cCcccHHHHHHHHHHcCCCEEEEeccccccccCCCC--CHHHHHHHHhcCCCCeeeeeeecc------------CcHHhH
Q psy11600 15 SDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTF--GHPVVKCLRNKIPKAFFETHMMVQ------------NPQQWI 80 (277)
Q Consensus 15 ~d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~--g~~~v~~l~~~~~~~~~d~Hlmv~------------~p~~~i 80 (277)
.+...+.++++...+.|+..+|+ .+|.. |...+ =.++++.+|+..+++ .++-++. ...+.+
T Consensus 36 ls~eeI~~~~~~~~~~G~~~i~l--~gg~~-~~~~~~~~~~i~~~Ik~~~~~i--~~~~~s~~e~~~~~~~~g~~~~e~l 110 (309)
T TIGR00423 36 LSLEEILEKVKEAVAKGATEVCI--QGGLN-PQLDIEYYEELFRAIKQEFPDV--HIHAFSPMEVYFLAKNEGLSIEEVL 110 (309)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEE--ecCCC-CCCCHHHHHHHHHHHHHHCCCc--eEEecCHHHHHHHHHHcCCCHHHHH
Confidence 56667777888888889999776 45532 33222 356788888765443 3332221 146779
Q ss_pred HHHHhcCCCeE
Q psy11600 81 EPMADANVDQY 91 (277)
Q Consensus 81 ~~l~~ag~d~i 91 (277)
+.+.++|++.+
T Consensus 111 ~~LkeAGl~~i 121 (309)
T TIGR00423 111 KRLKKAGLDSM 121 (309)
T ss_pred HHHHHcCCCcC
Confidence 99999999988
No 209
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=91.93 E-value=0.99 Score=41.63 Aligned_cols=26 Identities=38% Similarity=0.612 Sum_probs=23.7
Q ss_pred CCccEEEeCCCCcCcHHHHHHccCCC
Q psy11600 211 PTLNIEVDGGVGPNTIDECAKCLTGF 236 (277)
Q Consensus 211 ~~~~i~vdGgV~~~tv~~~~~~gpg~ 236 (277)
+++.+++-||||++|++++.+.|+|+
T Consensus 230 ~~~~leaSGGI~~~ni~~yA~tGvD~ 255 (278)
T PRK08385 230 ERVKIEVSGGITPENIEEYAKLDVDV 255 (278)
T ss_pred CCEEEEEECCCCHHHHHHHHHcCCCE
Confidence 45678999999999999999999997
No 210
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=91.92 E-value=2.2 Score=38.32 Aligned_cols=120 Identities=10% Similarity=0.064 Sum_probs=77.7
Q ss_pred eEeeeccccCcccHHHHHHHHHHcCCCEEEEeccccccccC-----------CCCCH----HHHHHHHhcCCCCeeeeee
Q psy11600 7 MIGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPN-----------LTFGH----PVVKCLRNKIPKAFFETHM 71 (277)
Q Consensus 7 ~~~~s~~~~d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~-----------~~~g~----~~v~~l~~~~~~~~~d~Hl 71 (277)
.++.|+-..|...+.+..+.+.+ ++|+ +||-= -+|+ +.-.| ++++.+|+ .++|+.+=+
T Consensus 69 ~vivnv~~~~~ee~~~~a~~v~~-~~d~--IdiN~--gCP~~~v~~~g~G~~Ll~dp~~l~~iv~av~~--~~~PVsvKi 141 (231)
T TIGR00736 69 LVSVNVRFVDLEEAYDVLLTIAE-HADI--IEINA--HCRQPEITEIGIGQELLKNKELLKEFLTKMKE--LNKPIFVKI 141 (231)
T ss_pred CEEEEEecCCHHHHHHHHHHHhc-CCCE--EEEEC--CCCcHHHcCCCCchhhcCCHHHHHHHHHHHHc--CCCcEEEEe
Confidence 46778888888888888888766 5666 45421 2333 22233 45666664 367777766
Q ss_pred eccC----cHHhHHHHHhcCCCeEEEeccCCCC-----CHHHHHHHHhhCC-Ccc----cc--hhhhhHHHHhcCCCeEE
Q psy11600 72 MVQN----PQQWIEPMADANVDQYTFHVEPVDN-----VPQVIRQIKEAGM-KVG----QV--LQDWIEPMADANVDQYT 135 (277)
Q Consensus 72 mv~~----p~~~i~~l~~ag~d~i~~H~e~~d~-----g~~~i~~i~~~~~-~~~----d~--p~~~i~~~~~~g~d~it 135 (277)
=... ..+..+.+.++|+|++|+| .+.. ..+.|+++++... .|+ ++ +++..+.+. +|||.|.
T Consensus 142 R~~~~~~~~~~~a~~l~~aGad~i~Vd--~~~~g~~~a~~~~I~~i~~~~~~ipIIgNGgI~s~eda~e~l~-~GAd~Vm 218 (231)
T TIGR00736 142 RGNCIPLDELIDALNLVDDGFDGIHVD--AMYPGKPYADMDLLKILSEEFNDKIIIGNNSIDDIESAKEMLK-AGADFVS 218 (231)
T ss_pred CCCCCcchHHHHHHHHHHcCCCEEEEe--eCCCCCchhhHHHHHHHHHhcCCCcEEEECCcCCHHHHHHHHH-hCCCeEE
Confidence 5532 2356788899999999777 3432 2677888888763 554 22 677777665 8999887
Q ss_pred e
Q psy11600 136 F 136 (277)
Q Consensus 136 ~ 136 (277)
+
T Consensus 219 v 219 (231)
T TIGR00736 219 V 219 (231)
T ss_pred E
Confidence 6
No 211
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=91.84 E-value=5.6 Score=39.39 Aligned_cols=72 Identities=17% Similarity=0.242 Sum_probs=44.8
Q ss_pred HHHHHHHHHHcCCCEEEEecccc-ccccCCCC----CHHHHHHHHhcCCCCeeeeeeeccCc-------HH----hHHHH
Q psy11600 20 LHSESQNLLDSGADYLHLDVMDG-TFVPNLTF----GHPVVKCLRNKIPKAFFETHMMVQNP-------QQ----WIEPM 83 (277)
Q Consensus 20 l~~~~~~l~~~~~~~~h~DimDg-~fvp~~~~----g~~~v~~l~~~~~~~~~d~Hlmv~~p-------~~----~i~~l 83 (277)
.-+-++.|.+.|++. +.+.=| +|--+.+| -.+.++.+++..++.++-+.+-..|. .+ .++..
T Consensus 27 kl~Ia~~Ld~~Gv~~--IE~~ggatfd~~~~Fl~e~p~e~l~~l~~~~~~~~l~~l~r~~N~~G~~~~~dDvv~~fv~~A 104 (467)
T PRK14041 27 MLPALEAFDRMGFYS--MEVWGGATFDVCVRFLNENPWERLKEIRKRLKNTKIQMLLRGQNLVGYRHYADDVVELFVKKV 104 (467)
T ss_pred HHHHHHHHHHcCCCE--EEecCCccchhhhcccCCCHHHHHHHHHHhCCCCEEEEEeccccccCcccccchhhHHHHHHH
Confidence 334455677778888 666321 12111222 24778889887788888776666543 22 26777
Q ss_pred HhcCCCeEEE
Q psy11600 84 ADANVDQYTF 93 (277)
Q Consensus 84 ~~ag~d~i~~ 93 (277)
.++|+|++.+
T Consensus 105 ~~~Gvd~iri 114 (467)
T PRK14041 105 AEYGLDIIRI 114 (467)
T ss_pred HHCCcCEEEE
Confidence 8889998843
No 212
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=91.72 E-value=0.24 Score=45.83 Aligned_cols=74 Identities=23% Similarity=0.369 Sum_probs=48.3
Q ss_pred hhhhHHHHHhhCC-CccEEEeCCCCcCcHHHH---HHccCCC-CCcccccCHHHHHHH-HHhhCCCCeEEEeCCCCccCH
Q psy11600 199 MMPKVKWLRENYP-TLNIEVDGGVGPNTIDEC---AKCLTGF-GGQKFMQDMMPKVKW-LRENYPTLNIEVDGGVGPNTI 272 (277)
Q Consensus 199 ~l~kI~~l~~~~~-~~~i~vdGgV~~~tv~~~---~~~gpg~-ggq~F~~~~~~kI~~-l~~~~~~~~I~VDGGI~~~~~ 272 (277)
+.+.++.+++..+ ...+.| ...|.+++ .++|||+ .=..|.++.++++-+ +++..++..+++=||||.+|+
T Consensus 182 i~~av~~~r~~~~~~~~I~V----Ev~tleea~eA~~~GaD~I~LDn~~~e~l~~av~~~~~~~~~i~leAsGGIt~~ni 257 (288)
T PRK07428 182 IGEAITRIRQRIPYPLTIEV----ETETLEQVQEALEYGADIIMLDNMPVDLMQQAVQLIRQQNPRVKIEASGNITLETI 257 (288)
T ss_pred HHHHHHHHHHhCCCCCEEEE----ECCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhcCCCeEEEEECCCCHHHH
Confidence 3455666776655 344443 34565554 6678886 334666666666443 444467888999999999999
Q ss_pred HHhh
Q psy11600 273 DECA 276 (277)
Q Consensus 273 ~~~~ 276 (277)
.+++
T Consensus 258 ~~ya 261 (288)
T PRK07428 258 RAVA 261 (288)
T ss_pred HHHH
Confidence 8876
No 213
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=91.69 E-value=5.1 Score=35.02 Aligned_cols=111 Identities=12% Similarity=0.031 Sum_probs=67.1
Q ss_pred HHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEEec-cC--
Q psy11600 21 HSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTFHV-EP-- 97 (277)
Q Consensus 21 ~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~H~-e~-- 97 (277)
.++++.+.+.|+|.+=+|.-... .|.-..-.++++.+|+. +++++-+- +. ..+++..+.++|+|++.++. ..
T Consensus 78 ~~~v~~a~~aGad~I~~d~~~~~-~p~~~~~~~~i~~~~~~-~~i~vi~~--v~-t~ee~~~a~~~G~d~i~~~~~g~t~ 152 (221)
T PRK01130 78 LKEVDALAAAGADIIALDATLRP-RPDGETLAELVKRIKEY-PGQLLMAD--CS-TLEEGLAAQKLGFDFIGTTLSGYTE 152 (221)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCC-CCCCCCHHHHHHHHHhC-CCCeEEEe--CC-CHHHHHHHHHcCCCEEEcCCceeec
Confidence 46789999999998777653321 22112334778888874 56665442 22 34457788999999996531 11
Q ss_pred -----CCCCHHHHHHHHhhCCCcccc-----hhhhhHHHHhcCCCeEEe
Q psy11600 98 -----VDNVPQVIRQIKEAGMKVGQV-----LQDWIEPMADANVDQYTF 136 (277)
Q Consensus 98 -----~d~g~~~i~~i~~~~~~~~d~-----p~~~i~~~~~~g~d~it~ 136 (277)
.......++++++....|+-. -.+-+..+.++|||.+.+
T Consensus 153 ~~~~~~~~~~~~i~~i~~~~~iPvia~GGI~t~~~~~~~l~~GadgV~i 201 (221)
T PRK01130 153 ETKKPEEPDFALLKELLKAVGCPVIAEGRINTPEQAKKALELGAHAVVV 201 (221)
T ss_pred CCCCCCCcCHHHHHHHHHhCCCCEEEECCCCCHHHHHHHHHCCCCEEEE
Confidence 111467788888876554432 123344455677777666
No 214
>PLN02475 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase
Probab=91.64 E-value=3.2 Score=43.62 Aligned_cols=84 Identities=12% Similarity=0.178 Sum_probs=56.3
Q ss_pred HHHHHHHHHHcCCCEEEEeccccccccCC-----CCCHHHHHHHHhcCCCCeeeeeeeccCcH-HhHHHHHhcC-CCeEE
Q psy11600 20 LHSESQNLLDSGADYLHLDVMDGTFVPNL-----TFGHPVVKCLRNKIPKAFFETHMMVQNPQ-QWIEPMADAN-VDQYT 92 (277)
Q Consensus 20 l~~~~~~l~~~~~~~~h~DimDg~fvp~~-----~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~-~~i~~l~~ag-~d~i~ 92 (277)
+.++++.|.+.|++|+.+| +=.++-++ ....+..+.+.+..++.++.+|..-.+.. +.++.+.+.. +|.+
T Consensus 188 y~~~l~~L~~~Gv~~IQiD--EP~L~~d~~~~~~~~~~~ay~~l~~~~~~~~i~l~TyFg~~~~~~~~~l~~lp~Vd~l- 264 (766)
T PLN02475 188 YKEVIAELKAAGASWIQFD--EPALVMDLESHKLQAFKTAYAELESTLSGLNVLVETYFADVPAEAYKTLTSLKGVTAF- 264 (766)
T ss_pred HHHHHHHHHHCCCCEEEEe--CchhhcCCCHHHHHHHHHHHHHHHhccCCCeEEEEccCCCCCHHHHHHHHcCCCCCEE-
Confidence 5578899999999998887 32222111 11224455554444567889999999988 4788888888 9999
Q ss_pred EeccCCCCCHHHHHHH
Q psy11600 93 FHVEPVDNVPQVIRQI 108 (277)
Q Consensus 93 ~H~e~~d~g~~~i~~i 108 (277)
|+|...+ ++-++.+
T Consensus 265 -~lD~v~~-~~~L~~l 278 (766)
T PLN02475 265 -GFDLVRG-TKTLDLI 278 (766)
T ss_pred -EEEecCC-hhhHHHH
Confidence 8876653 3334444
No 215
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=91.64 E-value=9.2 Score=34.71 Aligned_cols=40 Identities=15% Similarity=0.068 Sum_probs=29.9
Q ss_pred CCcccccCHHHHHHHHHhhCCCCeEEEeCCCCccCHHHhh
Q psy11600 237 GGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECA 276 (277)
Q Consensus 237 ggq~F~~~~~~kI~~l~~~~~~~~I~VDGGI~~~~~~~~~ 276 (277)
||+.-..+-++.+++|.++.....|.+=||||.+|+.++.
T Consensus 149 Gg~~~a~~g~~~L~~lv~~a~~~~Im~GgGV~~~Nv~~l~ 188 (248)
T PRK11572 149 GQQQDAEQGLSLIMELIAASDGPIIMAGAGVRLSNLHKFL 188 (248)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEeCCCCCHHHHHHHH
Confidence 4444345667788888776656669999999999998874
No 216
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=91.64 E-value=2.2 Score=40.13 Aligned_cols=108 Identities=15% Similarity=0.171 Sum_probs=69.8
Q ss_pred HHHHHHHHcC--CCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEEeccCC-
Q psy11600 22 SESQNLLDSG--ADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTFHVEPV- 98 (277)
Q Consensus 22 ~~~~~l~~~~--~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~H~e~~- 98 (277)
+.+..|.+.| +|++=+|.-.|+-. .-.+.++++|+.+|...+-+- .|. ..+..+.+.++|+|.+.++.-..
T Consensus 97 ~r~~~lv~a~~~~d~i~~D~ahg~s~----~~~~~i~~i~~~~p~~~vi~G-nV~-t~e~a~~l~~aGad~I~V~~G~G~ 170 (321)
T TIGR01306 97 EFVTQLAEEALTPEYITIDIAHGHSN----SVINMIKHIKTHLPDSFVIAG-NVG-TPEAVRELENAGADATKVGIGPGK 170 (321)
T ss_pred HHHHHHHhcCCCCCEEEEeCccCchH----HHHHHHHHHHHhCCCCEEEEe-cCC-CHHHHHHHHHcCcCEEEECCCCCc
Confidence 5566677778 69999999998764 445789999998776544443 122 55567889999999997773211
Q ss_pred ---------CC--CHH--HHHHHHhhCCCcccc------hhhhhHHHHhcCCCeEEe
Q psy11600 99 ---------DN--VPQ--VIRQIKEAGMKVGQV------LQDWIEPMADANVDQYTF 136 (277)
Q Consensus 99 ---------d~--g~~--~i~~i~~~~~~~~d~------p~~~i~~~~~~g~d~it~ 136 (277)
.+ +++ .|..+++....++-. ..+.++.++ +|||.+-+
T Consensus 171 ~~~tr~~~g~g~~~~~l~ai~ev~~a~~~pVIadGGIr~~~Di~KALa-~GAd~Vmi 226 (321)
T TIGR01306 171 VCITKIKTGFGTGGWQLAALRWCAKAARKPIIADGGIRTHGDIAKSIR-FGASMVMI 226 (321)
T ss_pred cccceeeeccCCCchHHHHHHHHHHhcCCeEEEECCcCcHHHHHHHHH-cCCCEEee
Confidence 11 223 455555544433322 566666666 58887765
No 217
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=91.48 E-value=1.1 Score=42.10 Aligned_cols=116 Identities=11% Similarity=0.149 Sum_probs=67.1
Q ss_pred HHHHHHHHHcCCCEEEEeccccc----c----------------ccCCCCCHHHHHHHHhcCC-CCeeeeeeecc-----
Q psy11600 21 HSESQNLLDSGADYLHLDVMDGT----F----------------VPNLTFGHPVVKCLRNKIP-KAFFETHMMVQ----- 74 (277)
Q Consensus 21 ~~~~~~l~~~~~~~~h~DimDg~----f----------------vp~~~~g~~~v~~l~~~~~-~~~~d~Hlmv~----- 74 (277)
.+..+++.++|.|.+-+-.--|- | -....|..++++.+|+.+. +.++-+-+-..
T Consensus 157 ~~aA~~a~~aGfDgVei~~~~gyLl~qFlsp~~N~R~D~yGgsl~nr~rf~~eiv~aIR~~vG~d~~v~vri~~~~~~~~ 236 (336)
T cd02932 157 VAAARRAVEAGFDVIEIHAAHGYLLHQFLSPLSNKRTDEYGGSLENRMRFLLEVVDAVRAVWPEDKPLFVRISATDWVEG 236 (336)
T ss_pred HHHHHHHHHcCCCEEEEccccccHHHHhcCCccCCCCcccCCCHHHHhHHHHHHHHHHHHHcCCCceEEEEEcccccCCC
Confidence 34556678889999544432221 1 1112233689999998763 66666554321
Q ss_pred --CcH---HhHHHHHhcCCCeEEEeccC------CCC----CHHHHHHHHhhCCCcccc------hhhhhHHHHhcCCCe
Q psy11600 75 --NPQ---QWIEPMADANVDQYTFHVEP------VDN----VPQVIRQIKEAGMKVGQV------LQDWIEPMADANVDQ 133 (277)
Q Consensus 75 --~p~---~~i~~l~~ag~d~i~~H~e~------~d~----g~~~i~~i~~~~~~~~d~------p~~~i~~~~~~g~d~ 133 (277)
+++ +.++.+.+.|+|++++|.-. ... .....+++|+..+.|+-. |++..+.+.+-.+|.
T Consensus 237 g~~~~e~~~ia~~Le~~gvd~iev~~g~~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~~G~i~t~~~a~~~l~~g~aD~ 316 (336)
T cd02932 237 GWDLEDSVELAKALKELGVDLIDVSSGGNSPAQKIPVGPGYQVPFAERIRQEAGIPVIAVGLITDPEQAEAILESGRADL 316 (336)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEECCCCCCcccccCCCccccHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHcCCCCe
Confidence 233 34667788899999876311 111 235677788877665533 555444444434777
Q ss_pred EEe
Q psy11600 134 YTF 136 (277)
Q Consensus 134 it~ 136 (277)
|.+
T Consensus 317 V~~ 319 (336)
T cd02932 317 VAL 319 (336)
T ss_pred ehh
Confidence 665
No 218
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=91.48 E-value=5 Score=40.45 Aligned_cols=69 Identities=12% Similarity=0.126 Sum_probs=51.8
Q ss_pred eeeccCcHHhHHHHHhcCCCeEEEeccCCC---C------CHHHHHHHHhhCCCcccc------h----------hhhhH
Q psy11600 70 HMMVQNPQQWIEPMADANVDQYTFHVEPVD---N------VPQVIRQIKEAGMKVGQV------L----------QDWIE 124 (277)
Q Consensus 70 Hlmv~~p~~~i~~l~~ag~d~i~~H~e~~d---~------g~~~i~~i~~~~~~~~d~------p----------~~~i~ 124 (277)
+-.+.||.+..+.+.+.|||++|| +|... + -.++|+.+.+....|+.+ . .+.++
T Consensus 263 ~~~~gdPve~a~~y~~~Gadel~~-~Di~~~~~~~~~~~~~~~~i~~i~~~~~ip~~vGGGIr~~~d~~~~~~~~~e~~~ 341 (538)
T PLN02617 263 VRNLGKPVELAGQYYKDGADEVAF-LNITGFRDFPLGDLPMLEVLRRASENVFVPLTVGGGIRDFTDANGRYYSSLEVAS 341 (538)
T ss_pred CCcCCCHHHHHHHHHHcCCCEEEE-EECCCCcCCcccchhHHHHHHHHHhhCCCCEEEcCCccccccccccccchHHHHH
Confidence 345678999999999999999943 23321 1 156788888877777766 1 25689
Q ss_pred HHHhcCCCeEEeecC
Q psy11600 125 PMADANVDQYTFHVE 139 (277)
Q Consensus 125 ~~~~~g~d~it~H~E 139 (277)
.+.++|||.|++-..
T Consensus 342 ~~l~~GadkV~i~s~ 356 (538)
T PLN02617 342 EYFRSGADKISIGSD 356 (538)
T ss_pred HHHHcCCCEEEEChH
Confidence 999999999999764
No 219
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=91.46 E-value=1 Score=40.34 Aligned_cols=83 Identities=18% Similarity=0.155 Sum_probs=54.8
Q ss_pred CCCceEeeeccccCcccHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHH
Q psy11600 3 HVQCMIGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEP 82 (277)
Q Consensus 3 ~~~~~~~~s~~~~d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~ 82 (277)
|+.++|.|-. +..+.-+-.+.+++.|+|++|+|.|...- |. -..+.|+++++..+++|+-.-==|.++++..+.
T Consensus 136 PVsvKiR~~~---~~~~~~~~a~~l~~aGad~i~Vd~~~~g~-~~--a~~~~I~~i~~~~~~ipIIgNGgI~s~eda~e~ 209 (231)
T TIGR00736 136 PIFVKIRGNC---IPLDELIDALNLVDDGFDGIHVDAMYPGK-PY--ADMDLLKILSEEFNDKIIIGNNSIDDIESAKEM 209 (231)
T ss_pred cEEEEeCCCC---CcchHHHHHHHHHHcCCCEEEEeeCCCCC-ch--hhHHHHHHHHHhcCCCcEEEECCcCCHHHHHHH
Confidence 3455666654 23344566677899999999998665211 11 236889999986445776554445567777776
Q ss_pred HHhcCCCeEE
Q psy11600 83 MADANVDQYT 92 (277)
Q Consensus 83 l~~ag~d~i~ 92 (277)
+. +|||.+.
T Consensus 210 l~-~GAd~Vm 218 (231)
T TIGR00736 210 LK-AGADFVS 218 (231)
T ss_pred HH-hCCCeEE
Confidence 65 8999883
No 220
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=91.44 E-value=4.7 Score=35.38 Aligned_cols=116 Identities=16% Similarity=0.214 Sum_probs=77.9
Q ss_pred cHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEEeccCC
Q psy11600 19 NLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTFHVEPV 98 (277)
Q Consensus 19 ~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~H~e~~ 98 (277)
+..+..+.+++.|++.+|+==.||.+-.. .-..+.++++++. +++|+.+-=-+.+.++ ++.+.++|++.+.+=....
T Consensus 31 ~~~~~a~~~~~~g~~~i~v~dld~~~~g~-~~~~~~i~~i~~~-~~~pv~~~GGI~~~ed-~~~~~~~Ga~~vilg~~~l 107 (233)
T PRK00748 31 DPVAQAKAWEDQGAKWLHLVDLDGAKAGK-PVNLELIEAIVKA-VDIPVQVGGGIRSLET-VEALLDAGVSRVIIGTAAV 107 (233)
T ss_pred CHHHHHHHHHHcCCCEEEEEeCCccccCC-cccHHHHHHHHHH-CCCCEEEcCCcCCHHH-HHHHHHcCCCEEEECchHH
Confidence 55667777888999999985557766421 2346789999886 6777777666666654 5677778999884333222
Q ss_pred CCCHHHHHHHHhhCC----Ccccc-----------------hhhhhHHHHhcCCCeEEeec
Q psy11600 99 DNVPQVIRQIKEAGM----KVGQV-----------------LQDWIEPMADANVDQYTFHV 138 (277)
Q Consensus 99 d~g~~~i~~i~~~~~----~~~d~-----------------p~~~i~~~~~~g~d~it~H~ 138 (277)
+ .+..++.+.+... ..+|+ |.++++.+.++|++.+.+|-
T Consensus 108 ~-~~~~l~ei~~~~~~~i~vsid~k~~~v~~~g~~~~~~~~~~e~~~~~~~~g~~~ii~~~ 167 (233)
T PRK00748 108 K-NPELVKEACKKFPGKIVVGLDARDGKVATDGWLETSGVTAEDLAKRFEDAGVKAIIYTD 167 (233)
T ss_pred h-CHHHHHHHHHHhCCCceeeeeccCCEEEEccCeecCCCCHHHHHHHHHhcCCCEEEEee
Confidence 2 4666666655421 12221 56788889999999999984
No 221
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=91.43 E-value=2.9 Score=36.99 Aligned_cols=100 Identities=15% Similarity=0.103 Sum_probs=71.4
Q ss_pred HHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEEeccCCCCC
Q psy11600 22 SESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTFHVEPVDNV 101 (277)
Q Consensus 22 ~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~H~e~~d~g 101 (277)
++++...++|+++ -..|+ +.+++++.-+++ ++++-...+ +|.+.. ...++|+|++-+.. +...|
T Consensus 79 ~~~~~a~~aGA~F--------ivsP~--~~~~v~~~~~~~--~i~~iPG~~--T~~E~~-~A~~~Gad~vklFP-a~~~G 142 (213)
T PRK06552 79 VTARLAILAGAQF--------IVSPS--FNRETAKICNLY--QIPYLPGCM--TVTEIV-TALEAGSEIVKLFP-GSTLG 142 (213)
T ss_pred HHHHHHHHcCCCE--------EECCC--CCHHHHHHHHHc--CCCEECCcC--CHHHHH-HHHHcCCCEEEECC-cccCC
Confidence 5677888889998 45676 888999988864 666666544 666554 45679999997732 23458
Q ss_pred HHHHHHHHhhCC-Ccccc----hhhhhHHHHhcCCCeEEee
Q psy11600 102 PQVIRQIKEAGM-KVGQV----LQDWIEPMADANVDQYTFH 137 (277)
Q Consensus 102 ~~~i~~i~~~~~-~~~d~----p~~~i~~~~~~g~d~it~H 137 (277)
+..+++++.... .++-. ..+-+..+.++|++.+.+-
T Consensus 143 ~~~ik~l~~~~p~ip~~atGGI~~~N~~~~l~aGa~~vavg 183 (213)
T PRK06552 143 PSFIKAIKGPLPQVNVMVTGGVNLDNVKDWFAAGADAVGIG 183 (213)
T ss_pred HHHHHHHhhhCCCCEEEEECCCCHHHHHHHHHCCCcEEEEc
Confidence 999999988654 34322 5677788888888887763
No 222
>PRK15108 biotin synthase; Provisional
Probab=91.36 E-value=4.4 Score=38.37 Aligned_cols=78 Identities=8% Similarity=0.142 Sum_probs=48.4
Q ss_pred CcccHHHHHHHHHHcCCCEEEEecccc--ccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEE
Q psy11600 16 DLSNLHSESQNLLDSGADYLHLDVMDG--TFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTF 93 (277)
Q Consensus 16 d~~~l~~~~~~l~~~~~~~~h~DimDg--~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~ 93 (277)
+...+.+..+...+.|+..+++ ..-| .....+.+=.++++.+|+. .+.+.+++-... .+.++.|.++|+|.+++
T Consensus 77 s~eEI~~~a~~~~~~G~~~i~i-~~~g~~p~~~~~e~i~~~i~~ik~~--~i~v~~s~G~ls-~e~l~~LkeAGld~~n~ 152 (345)
T PRK15108 77 EVEQVLESARKAKAAGSTRFCM-GAAWKNPHERDMPYLEQMVQGVKAM--GLETCMTLGTLS-ESQAQRLANAGLDYYNH 152 (345)
T ss_pred CHHHHHHHHHHHHHcCCCEEEE-EecCCCCCcchHHHHHHHHHHHHhC--CCEEEEeCCcCC-HHHHHHHHHcCCCEEee
Confidence 3344555566666789999765 2221 1121223334667777753 455555555444 77899999999999976
Q ss_pred eccC
Q psy11600 94 HVEP 97 (277)
Q Consensus 94 H~e~ 97 (277)
-+|+
T Consensus 153 ~leT 156 (345)
T PRK15108 153 NLDT 156 (345)
T ss_pred cccc
Confidence 6776
No 223
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=91.33 E-value=3 Score=39.12 Aligned_cols=110 Identities=16% Similarity=0.203 Sum_probs=65.8
Q ss_pred HHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEEeccCC-
Q psy11600 20 LHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTFHVEPV- 98 (277)
Q Consensus 20 l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~H~e~~- 98 (277)
..+.++.+.+.|++.+++|.-.|+- ..-.+.++++|+.+|++++-++ -+ .-.+..+.+.++|+|.|.++.-..
T Consensus 95 ~~~~~~~l~eagv~~I~vd~~~G~~----~~~~~~i~~ik~~~p~v~Vi~G-~v-~t~~~A~~l~~aGaD~I~vg~g~G~ 168 (325)
T cd00381 95 DKERAEALVEAGVDVIVIDSAHGHS----VYVIEMIKFIKKKYPNVDVIAG-NV-VTAEAARDLIDAGADGVKVGIGPGS 168 (325)
T ss_pred HHHHHHHHHhcCCCEEEEECCCCCc----HHHHHHHHHHHHHCCCceEEEC-CC-CCHHHHHHHHhcCCCEEEECCCCCc
Confidence 4567777888999999998865422 1235679999987665444331 11 233457788899999998763211
Q ss_pred --------CCCH---HHHHHHHhhC---CCcccc------hhhhhHHHHhcCCCeEEe
Q psy11600 99 --------DNVP---QVIRQIKEAG---MKVGQV------LQDWIEPMADANVDQYTF 136 (277)
Q Consensus 99 --------d~g~---~~i~~i~~~~---~~~~d~------p~~~i~~~~~~g~d~it~ 136 (277)
..+. ..+..+++.. ..|+-. +.+..+.++ +||+.+-+
T Consensus 169 ~~~t~~~~g~g~p~~~~i~~v~~~~~~~~vpVIA~GGI~~~~di~kAla-~GA~~Vmi 225 (325)
T cd00381 169 ICTTRIVTGVGVPQATAVADVAAAARDYGVPVIADGGIRTSGDIVKALA-AGADAVML 225 (325)
T ss_pred CcccceeCCCCCCHHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHH-cCCCEEEe
Confidence 0111 2233333322 233322 666666665 89888776
No 224
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=91.26 E-value=1.6 Score=40.94 Aligned_cols=116 Identities=12% Similarity=0.139 Sum_probs=70.5
Q ss_pred cHHHHHHHHHHcCCCEEEEeccccc------c-cc---------------CCCCCHHHHHHHHhcCC-CCeeeeeeec--
Q psy11600 19 NLHSESQNLLDSGADYLHLDVMDGT------F-VP---------------NLTFGHPVVKCLRNKIP-KAFFETHMMV-- 73 (277)
Q Consensus 19 ~l~~~~~~l~~~~~~~~h~DimDg~------f-vp---------------~~~~g~~~v~~l~~~~~-~~~~d~Hlmv-- 73 (277)
++.+..++++++|.|. |+|-=|+ | .| ...|..++|+++|+... ++++-+.+-.
T Consensus 150 ~~~~aA~ra~~aGfDg--Veih~a~gyLl~qFlsp~~N~R~D~yGGslenR~rf~~EiI~aIR~avG~d~~v~vris~~~ 227 (338)
T cd04733 150 RFAHAARLAQEAGFDG--VQIHAAHGYLLSQFLSPLTNKRTDEYGGSLENRARLLLEIYDAIRAAVGPGFPVGIKLNSAD 227 (338)
T ss_pred HHHHHHHHHHHcCCCE--EEEchhhhhHHHHhcCCcCCCCCccCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEEEcHHH
Confidence 3445667788899999 5553332 1 22 23344689999998864 5666665531
Q ss_pred -----cCcH---HhHHHHHhcCCCeEEEeccC---CC----------C----CHHHHHHHHhhCCCcccc------hhhh
Q psy11600 74 -----QNPQ---QWIEPMADANVDQYTFHVEP---VD----------N----VPQVIRQIKEAGMKVGQV------LQDW 122 (277)
Q Consensus 74 -----~~p~---~~i~~l~~ag~d~i~~H~e~---~d----------~----g~~~i~~i~~~~~~~~d~------p~~~ 122 (277)
.+++ +.++.+.++|+|++++|.-. .. . -....+.+|+.+..|+-. |++.
T Consensus 228 ~~~~g~~~eea~~ia~~Le~~Gvd~iev~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~v~iPVi~~G~i~t~~~a 307 (338)
T cd04733 228 FQRGGFTEEDALEVVEALEEAGVDLVELSGGTYESPAMAGAKKESTIAREAYFLEFAEKIRKVTKTPLMVTGGFRTRAAM 307 (338)
T ss_pred cCCCCCCHHHHHHHHHHHHHcCCCEEEecCCCCCCccccccccCCccccchhhHHHHHHHHHHcCCCEEEeCCCCCHHHH
Confidence 1333 34778889999999876321 00 0 025567788877665533 5555
Q ss_pred hHHHHhcCCCeEEe
Q psy11600 123 IEPMADANVDQYTF 136 (277)
Q Consensus 123 i~~~~~~g~d~it~ 136 (277)
.+.+.+-++|.|.+
T Consensus 308 ~~~l~~g~aD~V~l 321 (338)
T cd04733 308 EQALASGAVDGIGL 321 (338)
T ss_pred HHHHHcCCCCeeee
Confidence 55555555777776
No 225
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=91.23 E-value=2.1 Score=41.52 Aligned_cols=109 Identities=16% Similarity=0.115 Sum_probs=67.7
Q ss_pred HHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEEeccCC--
Q psy11600 21 HSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTFHVEPV-- 98 (277)
Q Consensus 21 ~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~H~e~~-- 98 (277)
.+.++.|.++|+|.+=+|.-+|+-. .-.+.++++|+.+|+.++-+. -+..++ ....+.++|+|.|-+-+...
T Consensus 155 ~~~v~~lv~aGvDvI~iD~a~g~~~----~~~~~v~~ik~~~p~~~vi~g-~V~T~e-~a~~l~~aGaD~I~vG~g~Gs~ 228 (404)
T PRK06843 155 IERVEELVKAHVDILVIDSAHGHST----RIIELVKKIKTKYPNLDLIAG-NIVTKE-AALDLISVGADCLKVGIGPGSI 228 (404)
T ss_pred HHHHHHHHhcCCCEEEEECCCCCCh----hHHHHHHHHHhhCCCCcEEEE-ecCCHH-HHHHHHHcCCCEEEECCCCCcC
Confidence 3678888889999999999997621 234779999998888653221 123333 45667889999986544321
Q ss_pred ------CC-CHH---HHHHHHhh---CCCcccc------hhhhhHHHHhcCCCeEEe
Q psy11600 99 ------DN-VPQ---VIRQIKEA---GMKVGQV------LQDWIEPMADANVDQYTF 136 (277)
Q Consensus 99 ------d~-g~~---~i~~i~~~---~~~~~d~------p~~~i~~~~~~g~d~it~ 136 (277)
++ |.. .+..+++. ...|+-+ |.+.++.|+ +||+.+-+
T Consensus 229 c~tr~~~g~g~p~ltai~~v~~~~~~~~vpVIAdGGI~~~~Di~KALa-lGA~aVmv 284 (404)
T PRK06843 229 CTTRIVAGVGVPQITAICDVYEVCKNTNICIIADGGIRFSGDVVKAIA-AGADSVMI 284 (404)
T ss_pred CcceeecCCCCChHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHHHH-cCCCEEEE
Confidence 12 222 23223332 2333322 777777776 88886655
No 226
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=91.22 E-value=12 Score=34.24 Aligned_cols=70 Identities=10% Similarity=0.182 Sum_probs=51.7
Q ss_pred HHHHHHHHHcCCCEEEEe-ccccccccCCCCCHHHHHH-------HHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEE
Q psy11600 21 HSESQNLLDSGADYLHLD-VMDGTFVPNLTFGHPVVKC-------LRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYT 92 (277)
Q Consensus 21 ~~~~~~l~~~~~~~~h~D-imDg~fvp~~~~g~~~v~~-------l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~ 92 (277)
.++.+.|++.|+|.+=+- -.|.+|.+ ..+|+++.+ +|+. ..+|+=+.++-.++..-+.....+|+++|-
T Consensus 31 ~~ea~~l~~~GvD~viveN~~d~P~~~--~~~p~tva~m~~i~~~v~~~-~~~p~GvnvL~nd~~aal~iA~a~ga~FIR 107 (257)
T TIGR00259 31 WKDAMALEEGGVDAVMFENFFDAPFLK--EVDPETVAAMAVIAGQLKSD-VSIPLGINVLRNDAVAALAIAMAVGAKFIR 107 (257)
T ss_pred HHHHHHHHhCCCCEEEEecCCCCCCcC--CCCHHHHHHHHHHHHHHHHh-cCCCeeeeeecCCCHHHHHHHHHhCCCEEE
Confidence 367788999999996653 23577765 477776655 4443 456888888888899888888889999885
Q ss_pred E
Q psy11600 93 F 93 (277)
Q Consensus 93 ~ 93 (277)
+
T Consensus 108 v 108 (257)
T TIGR00259 108 V 108 (257)
T ss_pred E
Confidence 4
No 227
>PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional
Probab=91.18 E-value=6.2 Score=40.34 Aligned_cols=148 Identities=15% Similarity=0.159 Sum_probs=89.1
Q ss_pred HhHHHHHhcCCCeEEEeccCCC--C-CHHH-HHHHHhhCC----Ccc----cc-hhhhhHHHHhcCCCeEEeecCCCCCh
Q psy11600 78 QWIEPMADANVDQYTFHVEPVD--N-VPQV-IRQIKEAGM----KVG----QV-LQDWIEPMADANVDQYTFHVEPVDNV 144 (277)
Q Consensus 78 ~~i~~l~~ag~d~i~~H~e~~d--~-g~~~-i~~i~~~~~----~~~----d~-p~~~i~~~~~~g~d~it~H~E~~~~~ 144 (277)
+.++.+.++|+|++-|-+.... . .++. .+.|.+.-. ..+ +. ++...+...+.+.|.+=+|-+ ..
T Consensus 14 eda~~a~~~gaD~iGfIf~~~SpR~V~~~~~a~~i~~~l~~~~v~~VgVfv~~~~~~i~~~~~~~~ld~vQLHG~---e~ 90 (610)
T PRK13803 14 ALISKAVDMLPDFIGFIFYEKSPRFVGNKFLAPNLEKAIRKAGGRPVGVFVNESAKAMLKFSKKNGIDFVQLHGA---ES 90 (610)
T ss_pred HHHHHHHHcCCCEEEEEecCCCCCCCCHHHHHHHHHHhCCCCCCCEEEEEeCCCHHHHHHHHHhcCCCEEEECCC---CC
Confidence 4567788999999988654321 1 4555 555544321 111 11 677778788999999999976 33
Q ss_pred ---HHHHHHHHHhCCcc--ceeeCCCCCHHhHHHHHhhcCceEEEEecC--CCCCchhhhhhhhhHHHHHhhCCCccEEE
Q psy11600 145 ---PQVIRQIKEAGMKV--GLAIKPKTPVDVIAEYIESADLVLIMTVEP--GFGGQKFMQDMMPKVKWLRENYPTLNIEV 217 (277)
Q Consensus 145 ---~~~~~~I~~~g~~~--g~~i~p~t~~~~i~~~i~~~d~vl~mav~P--gt~gq~~~~~~l~kI~~l~~~~~~~~i~v 217 (277)
....+.+++.+.+. -+.+.....++.+.+|...+|.+++=+-.| |.+|+.|.-+.+. .+.....+.+
T Consensus 91 ~~~~~~~~~l~~~~~~iika~~v~~~~~~~~~~~~~~~~d~~LlDs~~~~~GGtG~~fdw~~~~------~~~~~~p~iL 164 (610)
T PRK13803 91 KAEPAYCQRIYKKSIKKIGSFLIDDAFGFEVLDEYRDHVKYFLFDNKTKIYGGSGKSFDWEKFY------NYNFKFPFFL 164 (610)
T ss_pred cccHHHHHHhhhcCCcEEEEEEeCChhhHHHHHhhhccCCEEEEcCCCCCCCCCCCccChHHhh------hcccCCcEEE
Confidence 44555555433222 233333333455556655578777665444 3446666644332 2222345789
Q ss_pred eCCCCcCcHHHHHH-ccC
Q psy11600 218 DGGVGPNTIDECAK-CLT 234 (277)
Q Consensus 218 dGgV~~~tv~~~~~-~gp 234 (277)
.||++.+|+.++.+ ..|
T Consensus 165 AGGL~peNV~~ai~~~~p 182 (610)
T PRK13803 165 SGGLSPTNFDRIINLTHP 182 (610)
T ss_pred EeCCCHHHHHHHHhhhCC
Confidence 99999999999775 455
No 228
>PRK05265 pyridoxine 5'-phosphate synthase; Provisional
Probab=91.17 E-value=7.7 Score=34.99 Aligned_cols=167 Identities=12% Similarity=0.112 Sum_probs=94.9
Q ss_pred CcHHhHHHHHhcCCCeEEEeccCCCC--CHHHHHHHHhhCCCcc--cc-h-hhhhHHHHhcCCCeEEeecCCCCChHHHH
Q psy11600 75 NPQQWIEPMADANVDQYTFHVEPVDN--VPQVIRQIKEAGMKVG--QV-L-QDWIEPMADANVDQYTFHVEPVDNVPQVI 148 (277)
Q Consensus 75 ~p~~~i~~l~~ag~d~i~~H~e~~d~--g~~~i~~i~~~~~~~~--d~-p-~~~i~~~~~~g~d~it~H~E~~~~~~~~~ 148 (277)
||-+......++|||.||+|.-.--. -.+-+..+++....++ .+ | +++++...+..++.+|+=+| ...++
T Consensus 25 d~v~aA~~a~~aGAdgITvHlReDrRHI~d~Dv~~L~~~~~~~lNlE~a~~~em~~ia~~~kP~~vtLVPE---~r~E~- 100 (239)
T PRK05265 25 DPVRAALIAEQAGADGITVHLREDRRHIRDRDVRLLRETLKTELNLEMAATEEMLDIALEVKPHQVTLVPE---KREEL- 100 (239)
T ss_pred CHHHHHHHHHHcCCCEEEecCCCCcccCCHHHHHHHHHhcCCCEEeccCCCHHHHHHHHHCCCCEEEECCC---CCCCc-
Confidence 67777888899999999999764211 4566888888765544 33 4 77889999999999999888 32211
Q ss_pred HHHHHhCCccceeeCCCCCHH---hHHHHHhhcCceEEEEecCCCCCchhhhhhhhhHHHHHhhCCCccEEEeCCCCcCc
Q psy11600 149 RQIKEAGMKVGLAIKPKTPVD---VIAEYIESADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNT 225 (277)
Q Consensus 149 ~~I~~~g~~~g~~i~p~t~~~---~i~~~i~~~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~~~~~i~vdGgV~~~t 225 (277)
.-.-|+......+ .+...++..++..-+-++|.. +.|+..++.... -+++ -|
T Consensus 101 --------TTegGldv~~~~~~l~~~i~~L~~~gIrVSLFidP~~----------~qi~~A~~~GAd-~VEL------hT 155 (239)
T PRK05265 101 --------TTEGGLDVAGQFDKLKPAIARLKDAGIRVSLFIDPDP----------EQIEAAAEVGAD-RIEL------HT 155 (239)
T ss_pred --------cCCccchhhcCHHHHHHHHHHHHHCCCEEEEEeCCCH----------HHHHHHHHhCcC-EEEE------ec
Confidence 0122222222222 334445677777777778752 235544443221 1121 12
Q ss_pred HHHHHHccCCCCCcccccCHHHHHHHHHhh--CCCCeEEEeCCCCccCHHHhh
Q psy11600 226 IDECAKCLTGFGGQKFMQDMMPKVKWLREN--YPTLNIEVDGGVGPNTIDECA 276 (277)
Q Consensus 226 v~~~~~~gpg~ggq~F~~~~~~kI~~l~~~--~~~~~I~VDGGI~~~~~~~~~ 276 (277)
=..+ . . ++.+. ..-+++++..-+. ...+.+-.=.|.|.+|+..+.
T Consensus 156 G~yA-~--a-~~~~~--~~el~~~~~aa~~a~~lGL~VnAGHgLny~Nv~~i~ 202 (239)
T PRK05265 156 GPYA-D--A-KTEAE--AAELERIAKAAKLAASLGLGVNAGHGLNYHNVKPIA 202 (239)
T ss_pred hhhh-c--C-CCcch--HHHHHHHHHHHHHHHHcCCEEecCCCCCHHhHHHHh
Confidence 1100 0 0 11111 2224455443332 235677777889988877653
No 229
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.
Probab=91.14 E-value=3 Score=39.37 Aligned_cols=209 Identities=13% Similarity=0.159 Sum_probs=117.3
Q ss_pred eeccccCcccHHHHHHHHHHcCCCEEE------------------EeccccccccCCCC---CH-HHHHHHHhcCCCCee
Q psy11600 10 PSILNSDLSNLHSESQNLLDSGADYLH------------------LDVMDGTFVPNLTF---GH-PVVKCLRNKIPKAFF 67 (277)
Q Consensus 10 ~s~~~~d~~~l~~~~~~l~~~~~~~~h------------------~DimDg~fvp~~~~---g~-~~v~~l~~~~~~~~~ 67 (277)
|=++++=+..-.+.++.+.+.|...+= -..-|..+.+.+.| |. .+++++++...+.++
T Consensus 58 Pi~lAsG~~~~~~~~~~~~~~G~Gavv~kTvt~~p~~gn~~Pr~~~~~~~~~~iN~~Gl~n~G~~~~l~~i~~~~~~~~i 137 (335)
T TIGR01036 58 PLGLAAGFDKDGEAIDALGAMGFGFLEIGTVTPKPQPGNPRPRLFRLIEDEALINRMGFNNHGADVLVERLKRARYKGPI 137 (335)
T ss_pred CcEeCCccCCCHHHHHHHHhcCCCEEEeCCcCCCCCCCCCCCCEEECccccccccCCCCCChhHHHHHHHHhhccCCCcE
Confidence 334444455555677777776665421 11112345555555 33 346666654345666
Q ss_pred eeeeecc-------CcHHhHHHHHhcC--CCeEEEeccCCC--C---------CHHHHHHHHhhCC-------Ccccc--
Q psy11600 68 ETHMMVQ-------NPQQWIEPMADAN--VDQYTFHVEPVD--N---------VPQVIRQIKEAGM-------KVGQV-- 118 (277)
Q Consensus 68 d~Hlmv~-------~p~~~i~~l~~ag--~d~i~~H~e~~d--~---------g~~~i~~i~~~~~-------~~~d~-- 118 (277)
-+-+... .+++|.+.+..++ +|++.+-+-+-. + -.++++++|+.+. .|+-+
T Consensus 138 ~vsi~~~~~~~~~~~~~dy~~~~~~~~~~ad~iElNlScPn~~~~~~~~~~~~~~~i~~~V~~~~~~~~~~~~~Pv~vKL 217 (335)
T TIGR01036 138 GINIGKNKDTPSEDAKEDYAACLRKLGPLADYLVVNVSSPNTPGLRDLQYKAELRDLLTAVKQEQDGLRRVHRVPVLVKI 217 (335)
T ss_pred EEEEeCCCCCCcccCHHHHHHHHHHHhhhCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHHHHHhhhhccCCceEEEe
Confidence 6665433 3678888887777 999977543211 1 3456777776654 55533
Q ss_pred -h-------hhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCCccceeeCCCCCHHhHHHHHhhcCceEEEEecCCC
Q psy11600 119 -L-------QDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIMTVEPGF 190 (277)
Q Consensus 119 -p-------~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~i~p~t~~~~i~~~i~~~d~vl~mav~Pgt 190 (277)
| ...++.+.++|+|-|+.--- +.+. ..+ ..+... .-.-|.
T Consensus 218 sP~~~~~~i~~ia~~~~~~GadGi~l~NT----~~~~-~~~----------~~~~~~-----------------~~~GGl 265 (335)
T TIGR01036 218 APDLTESDLEDIADSLVELGIDGVIATNT----TVSR-SLV----------QGPKNS-----------------DETGGL 265 (335)
T ss_pred CCCCCHHHHHHHHHHHHHhCCcEEEEECC----CCcc-ccc----------cCcccc-----------------CCCCcc
Confidence 2 33456667788888887431 1110 000 000000 001256
Q ss_pred CCchhhhhhhhhHHHHHhhCC-CccEEEeCCCCc-CcHHHHHHccCCC---CCcccc--cCHHHHHH
Q psy11600 191 GGQKFMQDMMPKVKWLRENYP-TLNIEVDGGVGP-NTIDECAKCLTGF---GGQKFM--QDMMPKVK 250 (277)
Q Consensus 191 ~gq~~~~~~l~kI~~l~~~~~-~~~i~vdGgV~~-~tv~~~~~~gpg~---ggq~F~--~~~~~kI~ 250 (277)
+|....+-.+..+.++++..+ ++.+.-.|||.- +.+.+.+.+|++. |+..+. +...++|.
T Consensus 266 SG~~i~p~al~~v~~~~~~~~~~ipiig~GGI~~~~da~e~l~aGA~~Vqv~ta~~~~Gp~~~~~i~ 332 (335)
T TIGR01036 266 SGKPLQDKSTEIIRRLYAELQGRLPIIGVGGISSAQDALEKIRAGASLLQIYSGFIYWGPPLVKEIV 332 (335)
T ss_pred cCHHHHHHHHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcCCcHHHhhHHHHHhCchHHHHHH
Confidence 776777777888888877654 688988999853 3345566788885 555444 55555554
No 230
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=91.04 E-value=2.5 Score=41.89 Aligned_cols=68 Identities=19% Similarity=0.218 Sum_probs=50.8
Q ss_pred cHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEE
Q psy11600 19 NLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYT 92 (277)
Q Consensus 19 ~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~ 92 (277)
+..+-++.|.+.|+|.+=+|+-+|+=. .-.+.++++|+.||++++-+.- +. -.+....+.++|+|.+-
T Consensus 225 ~~~~ra~~Lv~aGVd~i~~D~a~g~~~----~~~~~i~~i~~~~~~~~vi~g~-~~-t~~~~~~l~~~G~d~i~ 292 (475)
T TIGR01303 225 DVGGKAKALLDAGVDVLVIDTAHGHQV----KMISAIKAVRALDLGVPIVAGN-VV-SAEGVRDLLEAGANIIK 292 (475)
T ss_pred cHHHHHHHHHHhCCCEEEEeCCCCCcH----HHHHHHHHHHHHCCCCeEEEec-cC-CHHHHHHHHHhCCCEEE
Confidence 455777888889999999999998653 3457899999988887766630 11 22346778899999984
No 231
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=91.00 E-value=0.66 Score=45.53 Aligned_cols=65 Identities=17% Similarity=0.273 Sum_probs=47.9
Q ss_pred HHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEE
Q psy11600 22 SESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYT 92 (277)
Q Consensus 22 ~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~ 92 (277)
+..+.|.++|+|.+++|...|+-. .-.+.++++|+.||++++-+ =-+.++ +..+.+.++|+|.+-
T Consensus 227 ~r~~~L~~aG~d~I~vd~a~g~~~----~~~~~i~~i~~~~~~~~vi~-G~v~t~-~~a~~l~~aGad~i~ 291 (450)
T TIGR01302 227 ERAEALVKAGVDVIVIDSSHGHSI----YVIDSIKEIKKTYPDLDIIA-GNVATA-EQAKALIDAGADGLR 291 (450)
T ss_pred HHHHHHHHhCCCEEEEECCCCcHh----HHHHHHHHHHHhCCCCCEEE-EeCCCH-HHHHHHHHhCCCEEE
Confidence 566677788999999999998542 45678999999888776655 122233 356678889999984
No 232
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=91.00 E-value=0.46 Score=43.76 Aligned_cols=78 Identities=14% Similarity=0.170 Sum_probs=47.0
Q ss_pred hhhhHHHHHhhCCCccEEEeCCCCcCcHHHHHHccCCC-CCcccccC-HHHHHHHHHhhCCCCeEEEeCCCCccCHHHhh
Q psy11600 199 MMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKCLTGF-GGQKFMQD-MMPKVKWLRENYPTLNIEVDGGVGPNTIDECA 276 (277)
Q Consensus 199 ~l~kI~~l~~~~~~~~i~vdGgV~~~tv~~~~~~gpg~-ggq~F~~~-~~~kI~~l~~~~~~~~I~VDGGI~~~~~~~~~ 276 (277)
+-+.++.+++..+...++|.-. +++-+.+..++|++. ---.|-++ ..+-++.+++..++..+++-||||++|++.++
T Consensus 175 i~~av~~~r~~~~~~kIeVEv~-tleea~ea~~~GaDiI~lDn~~~e~l~~~v~~l~~~~~~~~leasGGI~~~ni~~ya 253 (277)
T TIGR01334 175 WGGAIGRLKQTAPERKITVEAD-TIEQALTVLQASPDILQLDKFTPQQLHHLHERLKFFDHIPTLAAAGGINPENIADYI 253 (277)
T ss_pred HHHHHHHHHHhCCCCCEEEECC-CHHHHHHHHHcCcCEEEECCCCHHHHHHHHHHHhccCCCEEEEEECCCCHHHHHHHH
Confidence 3445667777766555665321 344444456677774 11234433 33333444445678889999999999998875
Q ss_pred C
Q psy11600 277 K 277 (277)
Q Consensus 277 ~ 277 (277)
+
T Consensus 254 ~ 254 (277)
T TIGR01334 254 E 254 (277)
T ss_pred h
Confidence 3
No 233
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=90.97 E-value=4.5 Score=35.65 Aligned_cols=167 Identities=14% Similarity=0.145 Sum_probs=84.7
Q ss_pred cCcHHhHHHHHhcCCCeEEEe------ccCCC-CCHHHHHHHHhhCCCcc-----cchhhhhHHHHhcCCCeEEeecCCC
Q psy11600 74 QNPQQWIEPMADANVDQYTFH------VEPVD-NVPQVIRQIKEAGMKVG-----QVLQDWIEPMADANVDQYTFHVEPV 141 (277)
Q Consensus 74 ~~p~~~i~~l~~ag~d~i~~H------~e~~d-~g~~~i~~i~~~~~~~~-----d~p~~~i~~~~~~g~d~it~H~E~~ 141 (277)
.++.+.++.+.+.|++.+.++ .+..- ++...+..++..+.... .....-++..+++||+.+.+..-..
T Consensus 21 ~d~~~~~~~~~~~g~~av~v~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~p~~~~~~~~~~v~~a~~~Ga~~v~~~~~~~ 100 (235)
T cd00958 21 EDPEETVKLAAEGGADAVALTKGIARAYGREYAGDIPLIVKLNGSTSLSPKDDNDKVLVASVEDAVRLGADAVGVTVYVG 100 (235)
T ss_pred cCHHHHHHHHHhcCCCEEEeChHHHHhcccccCCCCcEEEEECCCCCCCCCCCCchhhhcCHHHHHHCCCCEEEEEEecC
Confidence 477888888888888888777 22111 11111111111122111 1133447888999999886665210
Q ss_pred C-ChHHHH-------HHHHHhCCccceeeCCCC---------CHHhHHHH---Hh--hcCceEEEEecCCCCCchhhhhh
Q psy11600 142 D-NVPQVI-------RQIKEAGMKVGLAIKPKT---------PVDVIAEY---IE--SADLVLIMTVEPGFGGQKFMQDM 199 (277)
Q Consensus 142 ~-~~~~~~-------~~I~~~g~~~g~~i~p~t---------~~~~i~~~---i~--~~d~vl~mav~Pgt~gq~~~~~~ 199 (277)
. ...... +..++.|++. -++... +-+.+... .. .+|++-. ++ +.+
T Consensus 101 ~~~~~~~~~~i~~v~~~~~~~g~~~--iie~~~~g~~~~~~~~~~~i~~~~~~a~~~GaD~Ik~---~~-~~~------- 167 (235)
T cd00958 101 SEEEREMLEELARVAAEAHKYGLPL--IAWMYPRGPAVKNEKDPDLIAYAARIGAELGADIVKT---KY-TGD------- 167 (235)
T ss_pred CchHHHHHHHHHHHHHHHHHcCCCE--EEEEeccCCcccCccCHHHHHHHHHHHHHHCCCEEEe---cC-CCC-------
Confidence 0 111122 2222334332 222111 11333331 11 2455432 22 222
Q ss_pred hhhHHHHHhhCCCccEEEeCCCCcCc-------HHHHHHccCCC---CCcccc-cCHHHHHHHHHh
Q psy11600 200 MPKVKWLRENYPTLNIEVDGGVGPNT-------IDECAKCLTGF---GGQKFM-QDMMPKVKWLRE 254 (277)
Q Consensus 200 l~kI~~l~~~~~~~~i~vdGgV~~~t-------v~~~~~~gpg~---ggq~F~-~~~~~kI~~l~~ 254 (277)
++.++++.+.. .+.+.+.||++..| ++.++++|++. |+..|. ++..+.++++++
T Consensus 168 ~~~~~~i~~~~-~~pvv~~GG~~~~~~~~~l~~~~~~~~~Ga~gv~vg~~i~~~~dp~~~~~~~~~ 232 (235)
T cd00958 168 AESFKEVVEGC-PVPVVIAGGPKKDSEEEFLKMVYDAMEAGAAGVAVGRNIFQRPDPVAMLRAISA 232 (235)
T ss_pred HHHHHHHHhcC-CCCEEEeCCCCCCCHHHHHHHHHHHHHcCCcEEEechhhhcCCCHHHHHHHHHH
Confidence 23344444433 24467779987644 78889999884 777776 567777777775
No 234
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=90.93 E-value=8.1 Score=34.78 Aligned_cols=82 Identities=11% Similarity=0.114 Sum_probs=50.8
Q ss_pred cCcccHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCC---CCeeeeeee----ccCc-----------
Q psy11600 15 SDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIP---KAFFETHMM----VQNP----------- 76 (277)
Q Consensus 15 ~d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~---~~~~d~Hlm----v~~p----------- 76 (277)
++ .+|.+.++.+.+.|.|.+.+++-.....++...++..++++|+... .+.+.+|.- ..+|
T Consensus 8 ~~-~~l~~~l~~a~~~G~d~vEl~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~ 86 (279)
T cd00019 8 AG-FGLENALKRAKEIGFDTVAMFLGNPRSWLSRPLKKERAEKFKAIAEEGPSICLSVHAPYLINLASPDKEKREKSIER 86 (279)
T ss_pred cc-ccHHHHHHHHHHcCCCEEEEEcCCCCccCCCCCCHHHHHHHHHHHHHcCCCcEEEEcCceeccCCCCHHHHHHHHHH
Confidence 44 7899999999999999988876443333333345667777765432 346666631 1122
Q ss_pred -HHhHHHHHhcCCCeEEEeccC
Q psy11600 77 -QQWIEPMADANVDQYTFHVEP 97 (277)
Q Consensus 77 -~~~i~~l~~ag~d~i~~H~e~ 97 (277)
.+.++...+.|++++.+|.-.
T Consensus 87 ~~~~i~~A~~lG~~~v~~~~g~ 108 (279)
T cd00019 87 LKDEIERCEELGIRLLVFHPGS 108 (279)
T ss_pred HHHHHHHHHHcCCCEEEECCCC
Confidence 223555556688877777543
No 235
>PLN02475 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase
Probab=90.86 E-value=6.7 Score=41.25 Aligned_cols=77 Identities=21% Similarity=0.242 Sum_probs=46.9
Q ss_pred cHHHHHHHHHHcCCCEEEEeccccc-cccCCC-----CCHHHHHHHHhcC----CCCeeeeeeeccCcHHhHHHHHhcCC
Q psy11600 19 NLHSESQNLLDSGADYLHLDVMDGT-FVPNLT-----FGHPVVKCLRNKI----PKAFFETHMMVQNPQQWIEPMADANV 88 (277)
Q Consensus 19 ~l~~~~~~l~~~~~~~~h~DimDg~-fvp~~~-----~g~~~v~~l~~~~----~~~~~d~Hlmv~~p~~~i~~l~~ag~ 88 (277)
-+.+|++.|+++|++++.+|==.-. ..|.-. +=...+++++... ++..+..|+--.|..+.++.+.+..+
T Consensus 587 alr~Ev~~L~~aG~~~IQIDEPal~e~~~~~~~~~~~~l~~av~af~~~~~~v~~~~~I~~H~C~gnf~~I~~~i~~l~~ 666 (766)
T PLN02475 587 AIKDEVEDLEKAGITVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDA 666 (766)
T ss_pred HHHHHHHHHHHcCCCEEEEeCcchhhcCCcCccCHHHHHHHHHHHHHHHHhcCCCCCEEEEEEecCCcHHHHHHHHhCCC
Confidence 4668899999999999999843211 111000 1122333334321 24446777777788888888888888
Q ss_pred CeEEEeccC
Q psy11600 89 DQYTFHVEP 97 (277)
Q Consensus 89 d~i~~H~e~ 97 (277)
|.++ +|.
T Consensus 667 D~~~--~E~ 673 (766)
T PLN02475 667 DVIT--IEN 673 (766)
T ss_pred CEEE--EEc
Confidence 8885 454
No 236
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=90.77 E-value=1.6 Score=40.44 Aligned_cols=27 Identities=26% Similarity=0.427 Sum_probs=23.9
Q ss_pred CCCccEEEeCCCCcCcHHHHHHccCCC
Q psy11600 210 YPTLNIEVDGGVGPNTIDECAKCLTGF 236 (277)
Q Consensus 210 ~~~~~i~vdGgV~~~tv~~~~~~gpg~ 236 (277)
.+++.+++.||||.+|+.++.+.|+++
T Consensus 241 ~~~i~leAsGGIt~~ni~~ya~tGvD~ 267 (288)
T PRK07428 241 NPRVKIEASGNITLETIRAVAETGVDY 267 (288)
T ss_pred CCCeEEEEECCCCHHHHHHHHHcCCCE
Confidence 455678899999999999999999997
No 237
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=90.76 E-value=13 Score=35.48 Aligned_cols=65 Identities=23% Similarity=0.273 Sum_probs=38.0
Q ss_pred HHHHHHHHcCCCEEEEeccccccc-----cCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEEe
Q psy11600 22 SESQNLLDSGADYLHLDVMDGTFV-----PNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTFH 94 (277)
Q Consensus 22 ~~~~~l~~~~~~~~h~DimDg~fv-----p~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~H 94 (277)
+-++.|.+.|++. +++ |.|+ |++.--.+.++.+++. ++..+-+. +. -.+.++...++|++++++=
T Consensus 72 ~ia~~L~~~GV~~--IEv--Gs~vspk~vPqmad~~ev~~~i~~~-~~~~~~~l--~~-n~~die~A~~~g~~~v~i~ 141 (347)
T PLN02746 72 ELIQRLVSSGLPV--VEA--TSFVSPKWVPQLADAKDVMAAVRNL-EGARFPVL--TP-NLKGFEAAIAAGAKEVAVF 141 (347)
T ss_pred HHHHHHHHcCCCE--EEE--CCCcCcccccccccHHHHHHHHHhc-cCCceeEE--cC-CHHHHHHHHHcCcCEEEEE
Confidence 3455677778766 333 5554 4433233567888763 44433322 22 3456888999999998433
No 238
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=90.65 E-value=6.7 Score=34.28 Aligned_cols=111 Identities=14% Similarity=0.087 Sum_probs=68.3
Q ss_pred HHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEE-eccC--
Q psy11600 21 HSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTF-HVEP-- 97 (277)
Q Consensus 21 ~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~-H~e~-- 97 (277)
.++++.+.+.|+|.+=+|.-+.. .|+-..-.++++.+++.. ++++.+- +.+++ ++....++|+|++.+ +...
T Consensus 82 ~~~~~~a~~aGad~I~~~~~~~~-~p~~~~~~~~i~~~~~~g-~~~iiv~--v~t~~-ea~~a~~~G~d~i~~~~~g~t~ 156 (219)
T cd04729 82 IEEVDALAAAGADIIALDATDRP-RPDGETLAELIKRIHEEY-NCLLMAD--ISTLE-EALNAAKLGFDIIGTTLSGYTE 156 (219)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCC-CCCCcCHHHHHHHHHHHh-CCeEEEE--CCCHH-HHHHHHHcCCCEEEccCccccc
Confidence 35889999999999888765532 243223347888888864 5665543 33454 467788899999954 2211
Q ss_pred -----CCCCHHHHHHHHhhCCCcccc-----hhhhhHHHHhcCCCeEEe
Q psy11600 98 -----VDNVPQVIRQIKEAGMKVGQV-----LQDWIEPMADANVDQYTF 136 (277)
Q Consensus 98 -----~d~g~~~i~~i~~~~~~~~d~-----p~~~i~~~~~~g~d~it~ 136 (277)
.....+.++++++....|+-. -.+-+..+.++|||.+.+
T Consensus 157 ~~~~~~~~~~~~l~~i~~~~~ipvia~GGI~~~~~~~~~l~~GadgV~v 205 (219)
T cd04729 157 ETAKTEDPDFELLKELRKALGIPVIAEGRINSPEQAAKALELGADAVVV 205 (219)
T ss_pred cccCCCCCCHHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHHCCCCEEEE
Confidence 011457788888776544432 123444555567776665
No 239
>PRK04326 methionine synthase; Provisional
Probab=90.56 E-value=6.4 Score=36.65 Aligned_cols=70 Identities=21% Similarity=0.328 Sum_probs=43.1
Q ss_pred cHHHHHHHHHHcCCCEEEEeccccccccCCCCCH----HHHHHHHhcCC--CCeeeeeeeccCcHHhHHHHHhcCCCeEE
Q psy11600 19 NLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGH----PVVKCLRNKIP--KAFFETHMMVQNPQQWIEPMADANVDQYT 92 (277)
Q Consensus 19 ~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~----~~v~~l~~~~~--~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~ 92 (277)
.+.++++.|.+.|++++.+|=- .++..+ ..++.+++... +..+-+|+--.+.....+.+.+.++|.++
T Consensus 162 ~~~~~i~~l~~~G~~~iqidEP------~l~~~~~~~~~~~~~l~~~~~~~~~~v~lH~C~G~~~~~~~~l~~~~vd~i~ 235 (330)
T PRK04326 162 VINEEIKNLVEAGAKYIQIDEP------ALATHPEDVEIAVEALNRIVKGINAKLGLHVCYGDYSRIAPYILEFPVDQFD 235 (330)
T ss_pred HHHHHHHHHHHCCCCEEEecCc------hhhcCHHHHHHHHHHHHHHHhCCCCEEEEEEeCCCcHHHHHHHHhCCCCEEE
Confidence 3567888899999999888742 222222 22333333222 33455666656766667788888999884
Q ss_pred Ee
Q psy11600 93 FH 94 (277)
Q Consensus 93 ~H 94 (277)
+.
T Consensus 236 ~d 237 (330)
T PRK04326 236 LE 237 (330)
T ss_pred EE
Confidence 33
No 240
>TIGR01371 met_syn_B12ind 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase. This model describes the cobalamin-independent methionine synthase. A family of uncharacterized archaeal proteins is homologous to the C-terminal region of this family. That family is excluded from this model but, along with this family, belongs to pfam model pfam01717.
Probab=90.54 E-value=2.6 Score=44.19 Aligned_cols=76 Identities=13% Similarity=0.186 Sum_probs=53.1
Q ss_pred HHHHHHHHHHcCCCEEEEeccccccccC-----CCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEEe
Q psy11600 20 LHSESQNLLDSGADYLHLDVMDGTFVPN-----LTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTFH 94 (277)
Q Consensus 20 l~~~~~~l~~~~~~~~h~DimDg~fvp~-----~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~H 94 (277)
+.++++.|.+.|++|+.+| +=.++-+ +..-.+..+.+.+..++.++.+|..-.+..+.++.+.+.++|.+ |
T Consensus 180 y~~~l~~L~~~G~~~IQiD--EP~L~~d~~~~~~~~~~~ay~~l~~~~~~~ki~l~tyFg~~~~~~~~l~~lpvd~l--~ 255 (750)
T TIGR01371 180 YKEVLKKLAEAGATWVQID--EPALVTDLSKEDLAAFKEAYTELSEALSGLKLLLQTYFDSVGDALEALVSLPVKGI--G 255 (750)
T ss_pred HHHHHHHHHHCCCCEEEee--CchhcCCCCHHHHHHHHHHHHHHHhccCCceEEEECCCCchHHHHHHHHcCCCCEE--E
Confidence 4578999999999998887 3122211 11112344445443346778899999998888999999999999 7
Q ss_pred ccCCC
Q psy11600 95 VEPVD 99 (277)
Q Consensus 95 ~e~~d 99 (277)
+|...
T Consensus 256 lD~v~ 260 (750)
T TIGR01371 256 LDFVH 260 (750)
T ss_pred EEecc
Confidence 77654
No 241
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=90.45 E-value=0.45 Score=43.83 Aligned_cols=76 Identities=22% Similarity=0.280 Sum_probs=47.2
Q ss_pred hhhhHHHHHhhCCCc--cEEEeCCCCcCcHHHHHHccCCC-CCcccccCHHHHHHH-HHhhC--CCCeEEEeCCCCccCH
Q psy11600 199 MMPKVKWLRENYPTL--NIEVDGGVGPNTIDECAKCLTGF-GGQKFMQDMMPKVKW-LRENY--PTLNIEVDGGVGPNTI 272 (277)
Q Consensus 199 ~l~kI~~l~~~~~~~--~i~vdGgV~~~tv~~~~~~gpg~-ggq~F~~~~~~kI~~-l~~~~--~~~~I~VDGGI~~~~~ 272 (277)
+.+.++.++...+.. .++++ +++-+.+..++|++. =--.|.++.++++.+ +++.+ ++..+++-||||.+|+
T Consensus 169 i~~av~~~r~~~~~~kIeVEv~---~leea~~a~~agaDiI~LDn~~~e~l~~~v~~l~~~~~~~~~~leaSGGI~~~ni 245 (278)
T PRK08385 169 LEEAIRRAKEFSVYKVVEVEVE---SLEDALKAAKAGADIIMLDNMTPEEIREVIEALKREGLRERVKIEVSGGITPENI 245 (278)
T ss_pred HHHHHHHHHHhCCCCcEEEEeC---CHHHHHHHHHcCcCEEEECCCCHHHHHHHHHHHHhcCcCCCEEEEEECCCCHHHH
Confidence 445567777766544 44443 344444456677773 113344555555555 44443 6788999999999999
Q ss_pred HHhhC
Q psy11600 273 DECAK 277 (277)
Q Consensus 273 ~~~~~ 277 (277)
+++++
T Consensus 246 ~~yA~ 250 (278)
T PRK08385 246 EEYAK 250 (278)
T ss_pred HHHHH
Confidence 98763
No 242
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=90.42 E-value=4.4 Score=38.09 Aligned_cols=130 Identities=19% Similarity=0.136 Sum_probs=91.7
Q ss_pred EeeeccccCcccHHHHHHHHHHcCCCEEEEecccc---ccccCCCCC----------HHHHHHHHhcCCCCeeeeeeecc
Q psy11600 8 IGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDG---TFVPNLTFG----------HPVVKCLRNKIPKAFFETHMMVQ 74 (277)
Q Consensus 8 ~~~s~~~~d~~~l~~~~~~l~~~~~~~~h~DimDg---~fvp~~~~g----------~~~v~~l~~~~~~~~~d~Hlmv~ 74 (277)
++.-|...|+..+.+..+.+++.|+|. +|+-=| ..|-+-++| -+.|+++++..+++|+.|=+=+.
T Consensus 69 ~~vQl~gsdp~~l~eaA~~~~~~g~~~--IdlN~GCP~~~V~~~g~Ga~Ll~~p~lv~~iv~a~~~av~~iPVTVKiRlG 146 (323)
T COG0042 69 VAVQLGGSDPELLAEAAKIAEELGADI--IDLNCGCPSPKVVKGGAGAALLKNPELLAEIVKAMVEAVGDIPVTVKIRLG 146 (323)
T ss_pred EEEEecCCCHHHHHHHHHHHHhcCCCE--EeeeCCCChHHhcCCCcchhhcCCHHHHHHHHHHHHHhhCCCCeEEEEecc
Confidence 566788899999999999999988666 665332 222233343 35677788763358888876665
Q ss_pred C------cHHhHHHHHhcCCCeEEEeccCC-CC-----CHHHHHHHHhhCC-Cccc----c--hhhhhHHHHhcCCCeEE
Q psy11600 75 N------PQQWIEPMADANVDQYTFHVEPV-DN-----VPQVIRQIKEAGM-KVGQ----V--LQDWIEPMADANVDQYT 135 (277)
Q Consensus 75 ~------p~~~i~~l~~ag~d~i~~H~e~~-d~-----g~~~i~~i~~~~~-~~~d----~--p~~~i~~~~~~g~d~it 135 (277)
- ..+..+.+.++|++.+|+|.... .+ -.+.|+++|+... .|+- + +++..+.+...|+|-|-
T Consensus 147 ~d~~~~~~~~ia~~~~~~g~~~ltVHgRtr~~~y~~~ad~~~I~~vk~~~~~ipvi~NGdI~s~~~a~~~l~~tg~DgVM 226 (323)
T COG0042 147 WDDDDILALEIARILEDAGADALTVHGRTRAQGYLGPADWDYIKELKEAVPSIPVIANGDIKSLEDAKEMLEYTGADGVM 226 (323)
T ss_pred cCcccccHHHHHHHHHhcCCCEEEEecccHHhcCCCccCHHHHHHHHHhCCCCeEEeCCCcCCHHHHHHHHHhhCCCEEE
Confidence 4 22467788899999999997752 11 5678889988877 5553 2 78888888888999888
Q ss_pred eecC
Q psy11600 136 FHVE 139 (277)
Q Consensus 136 ~H~E 139 (277)
+-=.
T Consensus 227 igRg 230 (323)
T COG0042 227 IGRG 230 (323)
T ss_pred EcHH
Confidence 7543
No 243
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=90.36 E-value=11 Score=33.16 Aligned_cols=40 Identities=25% Similarity=0.326 Sum_probs=27.4
Q ss_pred CCcccccCHHHHHHHHHhh-CCCCeEEEeCCCCccCHHHhh
Q psy11600 237 GGQKFMQDMMPKVKWLREN-YPTLNIEVDGGVGPNTIDECA 276 (277)
Q Consensus 237 ggq~F~~~~~~kI~~l~~~-~~~~~I~VDGGI~~~~~~~~~ 276 (277)
||..-..+-++.+++|.++ ...++|.+=||||.+|++.+.
T Consensus 148 Gg~~~a~~g~~~L~~lv~~a~~~i~Im~GgGv~~~nv~~l~ 188 (201)
T PF03932_consen 148 GGAPTALEGIENLKELVEQAKGRIEIMPGGGVRAENVPELV 188 (201)
T ss_dssp TTSSSTTTCHHHHHHHHHHHTTSSEEEEESS--TTTHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCcEEEecCCCCHHHHHHHH
Confidence 4443334557778877654 356899999999999998875
No 244
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2. Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.
Probab=90.32 E-value=4.8 Score=37.87 Aligned_cols=83 Identities=14% Similarity=0.118 Sum_probs=55.8
Q ss_pred HHHHhcCCCCeeeeeeeccCc-----HHhHHHHHhcCCCeEEEeccCCC-----C---CH----HHHHHHHhhCCCcccc
Q psy11600 56 KCLRNKIPKAFFETHMMVQNP-----QQWIEPMADANVDQYTFHVEPVD-----N---VP----QVIRQIKEAGMKVGQV 118 (277)
Q Consensus 56 ~~l~~~~~~~~~d~Hlmv~~p-----~~~i~~l~~ag~d~i~~H~e~~d-----~---g~----~~i~~i~~~~~~~~d~ 118 (277)
+.+|+..|+.|+-+-+.+.++ .+..+.....++|.+-+|+.... . .. +.|+++++..+.|+-+
T Consensus 105 ~~vr~~~~~~p~i~nl~~~~~~~~~~~~~~~~i~~i~adal~i~ln~~q~~~~p~g~~~f~~~le~i~~i~~~~~vPViv 184 (333)
T TIGR02151 105 EVVREEAPNGPLIANIGAPQLVEGGPEEAQEAIDMIEADALAIHLNVLQELVQPEGDRNFKGWLEKIAEICSQLSVPVIV 184 (333)
T ss_pred HHHHHhCCCCcEEeecCchhhccccHHHHHHHHHHhcCCCEEEcCcccccccCCCCCcCHHHHHHHHHHHHHhcCCCEEE
Confidence 666775589999887765333 33444445557888888975321 1 22 5688888876666543
Q ss_pred -------hhhhhHHHHhcCCCeEEeec
Q psy11600 119 -------LQDWIEPMADANVDQYTFHV 138 (277)
Q Consensus 119 -------p~~~i~~~~~~g~d~it~H~ 138 (277)
..+.++.+.++|+|.|++|-
T Consensus 185 K~~g~g~~~~~a~~L~~aGvd~I~Vsg 211 (333)
T TIGR02151 185 KEVGFGISKEVAKLLADAGVSAIDVAG 211 (333)
T ss_pred EecCCCCCHHHHHHHHHcCCCEEEECC
Confidence 45677889999999999975
No 245
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=90.29 E-value=9.4 Score=34.09 Aligned_cols=115 Identities=13% Similarity=0.164 Sum_probs=74.3
Q ss_pred cHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEEeccCC
Q psy11600 19 NLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTFHVEPV 98 (277)
Q Consensus 19 ~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~H~e~~ 98 (277)
+..+..+.+++.|++++|+==.|+.. .-.-..++++++.+. .++|+.+.==+.+++ .++.+.++|++.+.+=....
T Consensus 33 dp~~~a~~~~~~g~~~l~ivDLd~~~--g~~~n~~~i~~i~~~-~~~pv~vgGGirs~e-dv~~~l~~Ga~kvviGs~~l 108 (241)
T PRK14024 33 SPLDAALAWQRDGAEWIHLVDLDAAF--GRGSNRELLAEVVGK-LDVKVELSGGIRDDE-SLEAALATGCARVNIGTAAL 108 (241)
T ss_pred CHHHHHHHHHHCCCCEEEEEeccccC--CCCccHHHHHHHHHH-cCCCEEEcCCCCCHH-HHHHHHHCCCCEEEECchHh
Confidence 44456667778999999962234432 222234789999875 566666655555554 57778889999885443333
Q ss_pred CCCHHHHHHHHhhC-CC---cccc----------------hhhhhHHHHhcCCCeEEeec
Q psy11600 99 DNVPQVIRQIKEAG-MK---VGQV----------------LQDWIEPMADANVDQYTFHV 138 (277)
Q Consensus 99 d~g~~~i~~i~~~~-~~---~~d~----------------p~~~i~~~~~~g~d~it~H~ 138 (277)
. .|++++++.+.. .. .+|+ +.++++.+.++|++.+++|-
T Consensus 109 ~-~p~l~~~i~~~~~~~i~vsld~~~~~v~~~Gw~~~~~~~~~~~~~l~~~G~~~iiv~~ 167 (241)
T PRK14024 109 E-NPEWCARVIAEHGDRVAVGLDVRGHTLAARGWTRDGGDLWEVLERLDSAGCSRYVVTD 167 (241)
T ss_pred C-CHHHHHHHHHHhhhhEEEEEEEeccEeccCCeeecCccHHHHHHHHHhcCCCEEEEEe
Confidence 2 466666665432 11 1121 57888999999999999994
No 246
>COG3142 CutC Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism]
Probab=90.26 E-value=6.6 Score=35.25 Aligned_cols=40 Identities=25% Similarity=0.277 Sum_probs=29.5
Q ss_pred CCcccccCHHHHHHHHHhhC-CCCeEEEeCCCCccCHHHhh
Q psy11600 237 GGQKFMQDMMPKVKWLRENY-PTLNIEVDGGVGPNTIDECA 276 (277)
Q Consensus 237 ggq~F~~~~~~kI~~l~~~~-~~~~I~VDGGI~~~~~~~~~ 276 (277)
||..--.+.++++++|.++. ..+.|.+=|||+++|+..+.
T Consensus 149 Gg~~sa~eg~~~l~~li~~a~gri~Im~GaGV~~~N~~~l~ 189 (241)
T COG3142 149 GGKASALEGLDLLKRLIEQAKGRIIIMAGAGVRAENIAELV 189 (241)
T ss_pred CCcCchhhhHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHH
Confidence 44433346677777777654 56889999999999998774
No 247
>PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=90.23 E-value=3.2 Score=36.98 Aligned_cols=113 Identities=12% Similarity=0.123 Sum_probs=75.8
Q ss_pred eEeeeccccCcccHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhc
Q psy11600 7 MIGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADA 86 (277)
Q Consensus 7 ~~~~s~~~~d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~a 86 (277)
++.-.+.++|..+...-.+..+..|+++ +||- =.|+.|+..|.. +++|+=|. .-+|+.+.. ..++
T Consensus 16 KVIsGLnNFd~~~V~~i~~AA~~ggAt~--vDIA---------adp~LV~~~~~~-s~lPICVS--aVep~~f~~-aV~A 80 (242)
T PF04481_consen 16 KVISGLNNFDAESVAAIVKAAEIGGATF--VDIA---------ADPELVKLAKSL-SNLPICVS--AVEPELFVA-AVKA 80 (242)
T ss_pred hheeCccccCHHHHHHHHHHHHccCCce--EEec---------CCHHHHHHHHHh-CCCCeEee--cCCHHHHHH-HHHh
Confidence 5667788999999999999999999998 7764 467889988874 99998764 447887775 5678
Q ss_pred CCCeEEEe-ccCC--CC---CHHHHHHHHhhCC-----C------cccch----hhhhHHHHhcCCCeE
Q psy11600 87 NVDQYTFH-VEPV--DN---VPQVIRQIKEAGM-----K------VGQVL----QDWIEPMADANVDQY 134 (277)
Q Consensus 87 g~d~i~~H-~e~~--d~---g~~~i~~i~~~~~-----~------~~d~p----~~~i~~~~~~g~d~i 134 (277)
|+|.+-+= ||+. .| ..+-|-.+-+.|+ . ||-.| .+...++.++|+|+|
T Consensus 81 GAdliEIGNfDsFY~qGr~f~a~eVL~Lt~~tR~LLP~~~LsVTVPHiL~ld~Qv~LA~~L~~~GaDiI 149 (242)
T PF04481_consen 81 GADLIEIGNFDSFYAQGRRFSAEEVLALTRETRSLLPDITLSVTVPHILPLDQQVQLAEDLVKAGADII 149 (242)
T ss_pred CCCEEEecchHHHHhcCCeecHHHHHHHHHHHHHhCCCCceEEecCccccHHHHHHHHHHHHHhCCcEE
Confidence 99988322 2221 11 3333333333321 1 22223 446688899999985
No 248
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=90.13 E-value=1.9 Score=39.74 Aligned_cols=74 Identities=14% Similarity=0.113 Sum_probs=56.0
Q ss_pred ccCcccHHHHHHHHHHcCCCEEEEeccc--cccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHH--HHhcCCC
Q psy11600 14 NSDLSNLHSESQNLLDSGADYLHLDVMD--GTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEP--MADANVD 89 (277)
Q Consensus 14 ~~d~~~l~~~~~~l~~~~~~~~h~DimD--g~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~--l~~ag~d 89 (277)
..|+..+.+.++.+.+.|++. +=+-| |...|.-. .+.++.+|+.+|+.++.+|.--..-...... ..++|++
T Consensus 143 r~~~~~~~~~~~~~~~~G~~~--i~l~DT~G~~~P~~v--~~l~~~l~~~~~~~~i~~H~Hnd~Gla~AN~laA~~aGa~ 218 (280)
T cd07945 143 RDSPDYVFQLVDFLSDLPIKR--IMLPDTLGILSPFET--YTYISDMVKRYPNLHFDFHAHNDYDLAVANVLAAVKAGIK 218 (280)
T ss_pred cCCHHHHHHHHHHHHHcCCCE--EEecCCCCCCCHHHH--HHHHHHHHhhCCCCeEEEEeCCCCCHHHHHHHHHHHhCCC
Confidence 357788889999999999998 77788 66777632 3678889888888999999877654443333 3567999
Q ss_pred eE
Q psy11600 90 QY 91 (277)
Q Consensus 90 ~i 91 (277)
++
T Consensus 219 ~v 220 (280)
T cd07945 219 GL 220 (280)
T ss_pred EE
Confidence 88
No 249
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=90.05 E-value=1.3 Score=42.31 Aligned_cols=83 Identities=17% Similarity=0.248 Sum_probs=52.9
Q ss_pred ceEeeeccccCcccHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHH--hHHHH
Q psy11600 6 CMIGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQ--WIEPM 83 (277)
Q Consensus 6 ~~~~~s~~~~d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~--~i~~l 83 (277)
..+++++-.-| +-.+-.+.|.++|+|.+-+|+..|+-. +-.+.++++|+.||++++ ++.|-.. ..+.|
T Consensus 97 l~V~aavg~~~--~~~er~~~L~~agvD~ivID~a~g~s~----~~~~~ik~ik~~~~~~~v----iaGNV~T~e~a~~L 166 (352)
T PF00478_consen 97 LLVAAAVGTRD--DDFERAEALVEAGVDVIVIDSAHGHSE----HVIDMIKKIKKKFPDVPV----IAGNVVTYEGAKDL 166 (352)
T ss_dssp BCEEEEEESST--CHHHHHHHHHHTT-SEEEEE-SSTTSH----HHHHHHHHHHHHSTTSEE----EEEEE-SHHHHHHH
T ss_pred ceEEEEecCCH--HHHHHHHHHHHcCCCEEEccccCccHH----HHHHHHHHHHHhCCCceE----EecccCCHHHHHHH
Confidence 34555555433 224566677788999999999998764 223679999999886655 4455332 36678
Q ss_pred HhcCCCeEEEeccCCCC
Q psy11600 84 ADANVDQYTFHVEPVDN 100 (277)
Q Consensus 84 ~~ag~d~i~~H~e~~d~ 100 (277)
.++|+|.+ -+-+..|
T Consensus 167 ~~aGad~v--kVGiGpG 181 (352)
T PF00478_consen 167 IDAGADAV--KVGIGPG 181 (352)
T ss_dssp HHTT-SEE--EESSSSS
T ss_pred HHcCCCEE--EEeccCC
Confidence 89999999 4444333
No 250
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=89.97 E-value=14 Score=33.57 Aligned_cols=98 Identities=20% Similarity=0.304 Sum_probs=55.9
Q ss_pred CcccHHHHHHHHHHcCCCEEEEeccccccccCCC-CCH--------HHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhc
Q psy11600 16 DLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLT-FGH--------PVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADA 86 (277)
Q Consensus 16 d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~-~g~--------~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~a 86 (277)
+.....+..+...+.|+++ +||-=-..-|+.. ..+ +.|+.+++. .++|+.+|- .+|+. ++...++
T Consensus 21 ~~~~~~~~a~~~~~~GA~i--IDIG~~st~p~~~~i~~~~E~~rl~~~v~~~~~~-~~~plsiDT--~~~~v-i~~al~~ 94 (257)
T TIGR01496 21 SVDKAVAHAERMLEEGADI--IDVGGESTRPGADRVSPEEELNRVVPVIKALRDQ-PDVPISVDT--YRAEV-ARAALEA 94 (257)
T ss_pred CHHHHHHHHHHHHHCCCCE--EEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhc-CCCeEEEeC--CCHHH-HHHHHHc
Confidence 3334445566667889999 8882101112211 111 345666653 467776663 34543 5555667
Q ss_pred CCCeEEEeccCCCCCHHHHHHHHhhCCCcccchhhhhHHHHhcCCCeEEeecC
Q psy11600 87 NVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPMADANVDQYTFHVE 139 (277)
Q Consensus 87 g~d~i~~H~e~~d~g~~~i~~i~~~~~~~~d~p~~~i~~~~~~g~d~it~H~E 139 (277)
|+++|- |+.... ..+.++.++++|+.+|.+|.+
T Consensus 95 G~~iIN-sis~~~-------------------~~~~~~l~~~~~~~vV~m~~~ 127 (257)
T TIGR01496 95 GADIIN-DVSGGQ-------------------DPAMLEVAAEYGVPLVLMHMR 127 (257)
T ss_pred CCCEEE-ECCCCC-------------------CchhHHHHHHcCCcEEEEeCC
Confidence 999872 432221 124556778889999999864
No 251
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=89.87 E-value=1.5 Score=40.19 Aligned_cols=79 Identities=16% Similarity=0.192 Sum_probs=55.9
Q ss_pred HHHHHHHHhcCC-CCeeeeeeeccCcHHhHHHHHhcCCCeEEEeccCCCCCHHHHHHHHhhCC--Ccccc----hhhhhH
Q psy11600 52 HPVVKCLRNKIP-KAFFETHMMVQNPQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGM--KVGQV----LQDWIE 124 (277)
Q Consensus 52 ~~~v~~l~~~~~-~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~H~e~~d~g~~~i~~i~~~~~--~~~d~----p~~~i~ 124 (277)
...++.+|+..+ +.+ +-+-+.++++ +....++|+|++ -+|.+ .++.++++.+... .|+.+ -.+-++
T Consensus 169 ~~~v~~~r~~~~~~~~--Igvev~s~ee-a~~A~~~gaDyI--~ld~~--~~e~l~~~~~~~~~~ipi~AiGGI~~~ni~ 241 (268)
T cd01572 169 TEAVRRARAAAPFTLK--IEVEVETLEQ-LKEALEAGADII--MLDNM--SPEELREAVALLKGRVLLEASGGITLENIR 241 (268)
T ss_pred HHHHHHHHHhCCCCCe--EEEEECCHHH-HHHHHHcCCCEE--EECCc--CHHHHHHHHHHcCCCCcEEEECCCCHHHHH
Confidence 456888888766 333 4455557754 555678999999 56655 4778888776553 45554 578889
Q ss_pred HHHhcCCCeEEee
Q psy11600 125 PMADANVDQYTFH 137 (277)
Q Consensus 125 ~~~~~g~d~it~H 137 (277)
+++++|+|.|++=
T Consensus 242 ~~a~~Gvd~Iav~ 254 (268)
T cd01572 242 AYAETGVDYISVG 254 (268)
T ss_pred HHHHcCCCEEEEE
Confidence 9999999998874
No 252
>PRK06520 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional
Probab=89.68 E-value=7 Score=37.36 Aligned_cols=23 Identities=26% Similarity=0.439 Sum_probs=18.9
Q ss_pred cHHHHHHHHHHcCCCEEEEeccc
Q psy11600 19 NLHSESQNLLDSGADYLHLDVMD 41 (277)
Q Consensus 19 ~l~~~~~~l~~~~~~~~h~DimD 41 (277)
-+.+|++.|.++|++++.+|==.
T Consensus 171 al~~Ei~~L~~aG~~~IQiDep~ 193 (368)
T PRK06520 171 TWRDAIKAFYDAGCRYLQLDDTV 193 (368)
T ss_pred HHHHHHHHHHHCCCCEEEecCcc
Confidence 36688999999999999998443
No 253
>cd00003 PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase domain; pyridoxal 5'-phosphate is the active form of vitamin B6 that acts as an essential, ubiquitous coenzyme in amino acid metabolism. In bacteria, formation of pyridoxine 5'-phosphate is a step in the biosynthesis of vitamin B6. PNP synthase, a homooctameric enzyme, catalyzes the final step in PNP biosynthesis, the condensation of 1-amino-acetone 3-phosphate and 1-deoxy-D-xylulose 5-phosphate. PNP synthase adopts a TIM barrel topology, intersubunit contacts are mediated by three ''extra'' helices, generating a tetramer of symmetric dimers with shared active sites; the open state has been proposed to accept substrates and to release products, while most of the catalytic events are likely to occur in the closed state; a hydrophilic channel running through the center of the barrel was identified as the essential structural feature that enables PNP synthase to release water molecules produced during the reaction from the closed,
Probab=89.65 E-value=12 Score=33.69 Aligned_cols=103 Identities=15% Similarity=0.167 Sum_probs=68.6
Q ss_pred CcHHhHHHHHhcCCCeEEEeccCCCC--CHHHHHHHHhhCCCcc--cc--hhhhhHHHHhcCCCeEEeecCCCCChHHHH
Q psy11600 75 NPQQWIEPMADANVDQYTFHVEPVDN--VPQVIRQIKEAGMKVG--QV--LQDWIEPMADANVDQYTFHVEPVDNVPQVI 148 (277)
Q Consensus 75 ~p~~~i~~l~~ag~d~i~~H~e~~d~--g~~~i~~i~~~~~~~~--d~--p~~~i~~~~~~g~d~it~H~E~~~~~~~~~ 148 (277)
||-+......++|||.||+|.-.--. -.+-+..+|+....++ ++ -+++++...+..++.+|+=+| ....+
T Consensus 22 dpv~aA~~a~~aGAdgITvHlReDrRHI~d~Dv~~L~~~~~~~lNlE~a~t~em~~ia~~~kP~~vtLVPE---kr~E~- 97 (234)
T cd00003 22 DPVEAALLAEKAGADGITVHLREDRRHIQDRDVRLLRELVRTELNLEMAPTEEMLEIALEVKPHQVTLVPE---KREEL- 97 (234)
T ss_pred CHHHHHHHHHHcCCCEEEecCCCCcCcCCHHHHHHHHHHcCCCEEeccCCCHHHHHHHHHCCCCEEEECCC---CCCCc-
Confidence 67778888999999999999763211 4456777877765444 33 477888899999999999888 32211
Q ss_pred HHHHHhCCccceeeCCCCCH---HhHHHHHhhcCceEEEEecCC
Q psy11600 149 RQIKEAGMKVGLAIKPKTPV---DVIAEYIESADLVLIMTVEPG 189 (277)
Q Consensus 149 ~~I~~~g~~~g~~i~p~t~~---~~i~~~i~~~d~vl~mav~Pg 189 (277)
.-.-|+...... ..+...++..++.+-+.++|.
T Consensus 98 --------TTegGldv~~~~~~l~~~i~~l~~~gI~VSLFiDPd 133 (234)
T cd00003 98 --------TTEGGLDVAGQAEKLKPIIERLKDAGIRVSLFIDPD 133 (234)
T ss_pred --------cCCccchhhcCHHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 012222222222 334445677788888888886
No 254
>COG1856 Uncharacterized homolog of biotin synthetase [Function unknown]
Probab=89.61 E-value=4 Score=36.69 Aligned_cols=94 Identities=18% Similarity=0.246 Sum_probs=62.3
Q ss_pred ccccCcccHHHHHHHHHHcCCCEEEE-eccc-cccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCC
Q psy11600 12 ILNSDLSNLHSESQNLLDSGADYLHL-DVMD-GTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVD 89 (277)
Q Consensus 12 ~~~~d~~~l~~~~~~l~~~~~~~~h~-DimD-g~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d 89 (277)
.+..+-..|.+....+++.|...+=+ -=|| .-+||=-.| -+.+++++.+ +.+.+.+|.=..+ +++++++.++++|
T Consensus 36 Mi~vt~~~l~k~~~el~kkGy~g~llSGGm~srg~VPl~kf-~d~lK~lke~-~~l~inaHvGfvd-E~~~eklk~~~vd 112 (275)
T COG1856 36 MIKVTTKSLLKRCMELEKKGYEGCLLSGGMDSRGKVPLWKF-KDELKALKER-TGLLINAHVGFVD-ESDLEKLKEELVD 112 (275)
T ss_pred hcccchHHHHHHHHHHHhcCceeEEEeCCcCCCCCccHHHH-HHHHHHHHHh-hCeEEEEEeeecc-HHHHHHHHHhcCc
Confidence 34445556667777777777665322 1233 224553333 2578889886 8999999999999 9999999999999
Q ss_pred eEEEeccCCCCCHHHHHHHHhh
Q psy11600 90 QYTFHVEPVDNVPQVIRQIKEA 111 (277)
Q Consensus 90 ~i~~H~e~~d~g~~~i~~i~~~ 111 (277)
.+...+-- -.++|+++-+.
T Consensus 113 vvsLDfvg---Dn~vIk~vy~l 131 (275)
T COG1856 113 VVSLDFVG---DNDVIKRVYKL 131 (275)
T ss_pred EEEEeecC---ChHHHHHHHcC
Confidence 99655432 23566665443
No 255
>PRK05222 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase; Provisional
Probab=89.61 E-value=5.9 Score=41.57 Aligned_cols=76 Identities=17% Similarity=0.239 Sum_probs=47.9
Q ss_pred HHHHHHHHHHcCCCEEEEeccccccccCCC-----CCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEEe
Q psy11600 20 LHSESQNLLDSGADYLHLDVMDGTFVPNLT-----FGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTFH 94 (277)
Q Consensus 20 l~~~~~~l~~~~~~~~h~DimDg~fvp~~~-----~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~H 94 (277)
+.++++.|.+.|++|+.+| |-.++-... .-.+..+.+.+..++..+.+|....+.....+.+.+.++|.+ |
T Consensus 186 y~~~l~~L~~aG~~~IQiD--EP~l~~~~~~~~~~~~~~~y~~l~~~~~~~~i~l~tyfg~~~~~~~~l~~l~Vd~l--~ 261 (758)
T PRK05222 186 YAELLAELAAAGAEWVQID--EPALVLDLPQEWLEAFKRAYEALAAAKPRPKLLLATYFGSLNDALDLLASLPVDGL--H 261 (758)
T ss_pred HHHHHHHHHHCCCCEEEee--CchhhcCCCHHHHHHHHHHHHHHhcCCCCCCEEEEeeccchhhHHHHHHcCCCCEE--E
Confidence 4578899999999998887 433321111 011223333331124567788887887666888889999999 5
Q ss_pred ccCCC
Q psy11600 95 VEPVD 99 (277)
Q Consensus 95 ~e~~d 99 (277)
+|..+
T Consensus 262 LD~~~ 266 (758)
T PRK05222 262 LDLVR 266 (758)
T ss_pred EEeeC
Confidence 55443
No 256
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=89.61 E-value=7.4 Score=33.76 Aligned_cols=146 Identities=16% Similarity=0.185 Sum_probs=78.0
Q ss_pred hhhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCCccceee--CCCCC-----HHhHHHHHhh-cCceEEEEecCCC
Q psy11600 119 LQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAI--KPKTP-----VDVIAEYIES-ADLVLIMTVEPGF 190 (277)
Q Consensus 119 p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~i--~p~t~-----~~~i~~~i~~-~d~vl~mav~Pgt 190 (277)
+.++++...+.|++.+++|.. ......+.++..+.+....+ ..|.+ +..+++.++. +|-+- +.+|.|.
T Consensus 19 i~~~~~~a~~~~~~av~v~p~---~v~~~~~~l~~~~~~v~~~~~fp~g~~~~~~k~~eve~A~~~GAdevd-vv~~~g~ 94 (203)
T cd00959 19 IRKLCDEAKEYGFAAVCVNPC---FVPLAREALKGSGVKVCTVIGFPLGATTTEVKVAEAREAIADGADEID-MVINIGA 94 (203)
T ss_pred HHHHHHHHHHcCCCEEEEcHH---HHHHHHHHcCCCCcEEEEEEecCCCCCcHHHHHHHHHHHHHcCCCEEE-EeecHHH
Confidence 456777888889999999765 44433333332222222221 12211 1234444442 44333 4456663
Q ss_pred CCchhhhhhhhhHHHHHhhCCC--ccEEEeCC-CCcCc----HHHHHHccCCC----CCcccccCHHHHHHHHHhhC-CC
Q psy11600 191 GGQKFMQDMMPKVKWLRENYPT--LNIEVDGG-VGPNT----IDECAKCLTGF----GGQKFMQDMMPKVKWLRENY-PT 258 (277)
Q Consensus 191 ~gq~~~~~~l~kI~~l~~~~~~--~~i~vdGg-V~~~t----v~~~~~~gpg~----ggq~F~~~~~~kI~~l~~~~-~~ 258 (277)
--.....++++.+.++++...+ +.+.+.-+ .+.+. .+.+.++|++| -|.......++.++.+++.. .+
T Consensus 95 ~~~~~~~~~~~ei~~v~~~~~g~~lkvI~e~~~l~~~~i~~a~ria~e~GaD~IKTsTG~~~~~at~~~v~~~~~~~~~~ 174 (203)
T cd00959 95 LKSGDYEAVYEEIAAVVEACGGAPLKVILETGLLTDEEIIKACEIAIEAGADFIKTSTGFGPGGATVEDVKLMKEAVGGR 174 (203)
T ss_pred HhCCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCCHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHHHHHHhCCC
Confidence 1112335566667777665433 22222222 22111 34467899998 23333456788888887754 46
Q ss_pred CeEEEeCCCC
Q psy11600 259 LNIEVDGGVG 268 (277)
Q Consensus 259 ~~I~VDGGI~ 268 (277)
..|-+-||+.
T Consensus 175 v~ik~aGGik 184 (203)
T cd00959 175 VGVKAAGGIR 184 (203)
T ss_pred ceEEEeCCCC
Confidence 7899999999
No 257
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=89.59 E-value=1 Score=41.77 Aligned_cols=75 Identities=17% Similarity=0.179 Sum_probs=44.3
Q ss_pred hhhhHHHHHhhCCCccEEEeCCCCcCcHHHH---HHccCCC-CCcccccCHHHHHH-HHHhhCCCCeEEEeCCCCccCHH
Q psy11600 199 MMPKVKWLRENYPTLNIEVDGGVGPNTIDEC---AKCLTGF-GGQKFMQDMMPKVK-WLRENYPTLNIEVDGGVGPNTID 273 (277)
Q Consensus 199 ~l~kI~~l~~~~~~~~i~vdGgV~~~tv~~~---~~~gpg~-ggq~F~~~~~~kI~-~l~~~~~~~~I~VDGGI~~~~~~ 273 (277)
..+.++++++..+...++| .++|.+++ .++|++. ==-.|.++.+++.- .+++..++..+++-||||++|++
T Consensus 186 i~~ai~~~r~~~~~~kIeV----Ev~tl~ea~eal~~gaDiI~LDnm~~e~vk~av~~~~~~~~~v~ieaSGGI~~~ni~ 261 (289)
T PRK07896 186 VVAALRAVRAAAPDLPCEV----EVDSLEQLDEVLAEGAELVLLDNFPVWQTQEAVQRRDARAPTVLLESSGGLTLDTAA 261 (289)
T ss_pred HHHHHHHHHHhCCCCCEEE----EcCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHhccCCCEEEEEECCCCHHHHH
Confidence 4456777777666554554 35666665 4455553 11233333222222 22334678899999999999998
Q ss_pred HhhC
Q psy11600 274 ECAK 277 (277)
Q Consensus 274 ~~~~ 277 (277)
.+++
T Consensus 262 ~yA~ 265 (289)
T PRK07896 262 AYAE 265 (289)
T ss_pred HHHh
Confidence 8763
No 258
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=89.48 E-value=11 Score=31.38 Aligned_cols=66 Identities=11% Similarity=0.073 Sum_probs=48.6
Q ss_pred CcccHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCC--CCeeeeeeeccC-------cHHhHHHHHhc
Q psy11600 16 DLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIP--KAFFETHMMVQN-------PQQWIEPMADA 86 (277)
Q Consensus 16 d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~--~~~~d~Hlmv~~-------p~~~i~~l~~a 86 (277)
|...+++.++.+.+.|++. -++. ..+++.+++..+ +.++.++.-..+ ..+.++.+.++
T Consensus 11 d~~~~~~~~~~~~~~gv~g--------i~~~-----g~~i~~~~~~~~~~~~~v~~~v~~~~~~~~~~~~~~~a~~a~~~ 77 (201)
T cd00945 11 TLEDIAKLCDEAIEYGFAA--------VCVN-----PGYVRLAADALAGSDVPVIVVVGFPTGLTTTEVKVAEVEEAIDL 77 (201)
T ss_pred CHHHHHHHHHHHHHhCCcE--------EEEC-----HHHHHHHHHHhCCCCCeEEEEecCCCCCCcHHHHHHHHHHHHHc
Confidence 6778888999998888876 2331 277887777655 488888887765 33467788889
Q ss_pred CCCeEEEe
Q psy11600 87 NVDQYTFH 94 (277)
Q Consensus 87 g~d~i~~H 94 (277)
|+|.+.++
T Consensus 78 Gad~i~v~ 85 (201)
T cd00945 78 GADEIDVV 85 (201)
T ss_pred CCCEEEEe
Confidence 99998665
No 259
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=89.38 E-value=20 Score=36.51 Aligned_cols=72 Identities=17% Similarity=0.306 Sum_probs=45.5
Q ss_pred cHHHHHHHHHHcCCCEEEEecccc-------ccccCCCCCHHHHHHHHhcCCCCeeeeeeeccC-------cH----HhH
Q psy11600 19 NLHSESQNLLDSGADYLHLDVMDG-------TFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQN-------PQ----QWI 80 (277)
Q Consensus 19 ~l~~~~~~l~~~~~~~~h~DimDg-------~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~-------p~----~~i 80 (277)
+.-+-++.|.+.|++. +++--| .|+..- -.+.++.+++..|+.++-..+-..| |. ..+
T Consensus 22 dkl~ia~~L~~~Gv~~--IE~~GGatfd~~~~f~~e~--~~e~l~~l~~~~~~~~l~~L~Rg~N~~G~~~ypddvv~~~v 97 (582)
T TIGR01108 22 DMLPIAEKLDDVGYWS--LEVWGGATFDACIRFLNED--PWERLRELKKALPNTPLQMLLRGQNLLGYRHYADDVVERFV 97 (582)
T ss_pred HHHHHHHHHHHcCCCE--EEecCCcccccccccCCCC--HHHHHHHHHHhCCCCEEEEEEccccccccccCchhhHHHHH
Confidence 3334556677778887 666422 333221 2367899988778888876654443 22 247
Q ss_pred HHHHhcCCCeEEEe
Q psy11600 81 EPMADANVDQYTFH 94 (277)
Q Consensus 81 ~~l~~ag~d~i~~H 94 (277)
+...++|+|++.+-
T Consensus 98 ~~a~~~Gvd~irif 111 (582)
T TIGR01108 98 KKAVENGMDVFRIF 111 (582)
T ss_pred HHHHHCCCCEEEEE
Confidence 77788899988544
No 260
>PRK08185 hypothetical protein; Provisional
Probab=89.38 E-value=5.7 Score=36.74 Aligned_cols=128 Identities=13% Similarity=0.104 Sum_probs=91.6
Q ss_pred eeccccCcccHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeee--ee---------------e
Q psy11600 10 PSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFET--HM---------------M 72 (277)
Q Consensus 10 ~s~~~~d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~--Hl---------------m 72 (277)
|=.+..|-..--+.++...+.|.+.+-+|=-+-+|--|+...-++++..++. ++++.+ .. +
T Consensus 70 PV~lHLDHg~~~e~i~~ai~~Gf~SVM~D~S~l~~eeNi~~t~~vv~~a~~~--gv~vE~ElG~vg~~e~~~~~~~~~~~ 147 (283)
T PRK08185 70 PFVIHLDHGATIEDVMRAIRCGFTSVMIDGSLLPYEENVALTKEVVELAHKV--GVSVEGELGTIGNTGTSIEGGVSEII 147 (283)
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHc--CCeEEEEEeeccCccccccccccccc
Confidence 5556677776667777878889999999988888888887777777666652 333222 11 1
Q ss_pred ccCcHHhHHHHHhcCCCeEEE-----eccCC-----CCCHHHHHHHHhhCCCcccc------hhhhhHHHHhcCCCeEEe
Q psy11600 73 VQNPQQWIEPMADANVDQYTF-----HVEPV-----DNVPQVIRQIKEAGMKVGQV------LQDWIEPMADANVDQYTF 136 (277)
Q Consensus 73 v~~p~~~i~~l~~ag~d~i~~-----H~e~~-----d~g~~~i~~i~~~~~~~~d~------p~~~i~~~~~~g~d~it~ 136 (277)
..+|++-.+...+.|+|++.+ |---. ....+.++.|++.+..|+-+ |++.+...+++|+.-|-+
T Consensus 148 ~t~peea~~f~~~TgvD~LAvaiGt~HG~y~~~~kp~L~~e~l~~I~~~~~iPLVlHGgsg~~~e~~~~ai~~GI~KiNi 227 (283)
T PRK08185 148 YTDPEQAEDFVSRTGVDTLAVAIGTAHGIYPKDKKPELQMDLLKEINERVDIPLVLHGGSANPDAEIAESVQLGVGKINI 227 (283)
T ss_pred CCCHHHHHHHHHhhCCCEEEeccCcccCCcCCCCCCCcCHHHHHHHHHhhCCCEEEECCCCCCHHHHHHHHHCCCeEEEe
Confidence 336665555555569999999 73311 12688999999987766532 888899999999999999
Q ss_pred ecC
Q psy11600 137 HVE 139 (277)
Q Consensus 137 H~E 139 (277)
..|
T Consensus 228 ~T~ 230 (283)
T PRK08185 228 SSD 230 (283)
T ss_pred ChH
Confidence 876
No 261
>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family. members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine.
Probab=89.36 E-value=7.1 Score=36.53 Aligned_cols=72 Identities=15% Similarity=0.378 Sum_probs=45.9
Q ss_pred cCcccHHHHHHHHHHcCCCEEEEeccccccccCCCCC--HHHHHHHHhcCCCCeeeeeeec---------c---CcHHhH
Q psy11600 15 SDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFG--HPVVKCLRNKIPKAFFETHMMV---------Q---NPQQWI 80 (277)
Q Consensus 15 ~d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g--~~~v~~l~~~~~~~~~d~Hlmv---------~---~p~~~i 80 (277)
.+...+.++++.+.+.|+..+|+ ..|.. |+..+. .++++.+++..+++. +|-++ . ...+.+
T Consensus 72 ls~eei~~~~~~~~~~G~~~i~l--~gG~~-p~~~~~~~~~li~~Ik~~~~~i~--~~~~s~~ei~~~~~~~g~~~~e~l 146 (340)
T TIGR03699 72 LSVEEILQKIEELVAYGGTQILL--QGGVN-PDLGLDYYEDLFRAIKARFPHIH--IHSFSPVEIVYIAKKEGLSLREVL 146 (340)
T ss_pred CCHHHHHHHHHHHHHcCCcEEEE--ecCCC-CCCCHHHHHHHHHHHHHHCCCcC--CCCCCHHHHHHHhccCCCCHHHHH
Confidence 44556667777888899999887 55532 443332 357788887644443 33221 0 125678
Q ss_pred HHHHhcCCCeE
Q psy11600 81 EPMADANVDQY 91 (277)
Q Consensus 81 ~~l~~ag~d~i 91 (277)
+.+.++|++.+
T Consensus 147 ~~Lk~aG~~~~ 157 (340)
T TIGR03699 147 ERLKEAGLDSI 157 (340)
T ss_pred HHHHHcCCCcC
Confidence 99999999988
No 262
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=89.36 E-value=5 Score=41.69 Aligned_cols=193 Identities=13% Similarity=0.115 Sum_probs=114.2
Q ss_pred HHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEEeccCC--CCCHHHHHHHHhhCCCcccc-----hhhhhHH
Q psy11600 53 PVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTFHVEPV--DNVPQVIRQIKEAGMKVGQV-----LQDWIEP 125 (277)
Q Consensus 53 ~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~H~e~~--d~g~~~i~~i~~~~~~~~d~-----p~~~i~~ 125 (277)
.+|.++|+.-|..-.-. .-.+|.+..+.+.++||+.|++.-|.. .|....++.+|+.+..|+.. -...|.+
T Consensus 51 ~vIaEiKraSPs~G~i~--~~~d~~~~a~~y~~~GA~aiSVlTe~~~F~Gs~~~l~~vr~~v~~PvLrKDFIid~~QI~e 128 (695)
T PRK13802 51 PVIAEIKRASPSKGHLS--DIPDPAALAREYEQGGASAISVLTEGRRFLGSLDDFDKVRAAVHIPVLRKDFIVTDYQIWE 128 (695)
T ss_pred eEEEEeecCCCCCCcCC--CCCCHHHHHHHHHHcCCcEEEEecCcCcCCCCHHHHHHHHHhCCCCEEeccccCCHHHHHH
Confidence 35556666544432222 123788999999999999999998864 56999999999998887754 3556777
Q ss_pred HHhcCCCeEEeecCCCC--ChHHHHHHHHHhCCccceeeCCCCCHHhHHHHHhhcCceEEEEecCCCCCchhhhhhhhhH
Q psy11600 126 MADANVDQYTFHVEPVD--NVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIMTVEPGFGGQKFMQDMMPKV 203 (277)
Q Consensus 126 ~~~~g~d~it~H~E~~~--~~~~~~~~I~~~g~~~g~~i~p~t~~~~i~~~i~~~d~vl~mav~Pgt~gq~~~~~~l~kI 203 (277)
-..+|||.|.+.+..-. .+..+++..+.+|+.+=+-+. .-+++...++. +.. ++.||-- ....| +--++.-
T Consensus 129 a~~~GADavLLI~~~L~~~~l~~l~~~a~~lGme~LvEvh---~~~el~~a~~~-ga~-iiGINnR-dL~tf-~vd~~~t 201 (695)
T PRK13802 129 ARAHGADLVLLIVAALDDAQLKHLLDLAHELGMTVLVETH---TREEIERAIAA-GAK-VIGINAR-NLKDL-KVDVNKY 201 (695)
T ss_pred HHHcCCCEeehhHhhcCHHHHHHHHHHHHHcCCeEEEEeC---CHHHHHHHHhC-CCC-EEEEeCC-CCccc-eeCHHHH
Confidence 78899999998875110 122333444444433211111 11234333432 211 2344531 11112 1124455
Q ss_pred HHHHhhCCC-ccEEEeCCCC-cCcHHHHHHccCCC---CCcccc-cCHHHHHHHHHh
Q psy11600 204 KWLRENYPT-LNIEVDGGVG-PNTIDECAKCLTGF---GGQKFM-QDMMPKVKWLRE 254 (277)
Q Consensus 204 ~~l~~~~~~-~~i~vdGgV~-~~tv~~~~~~gpg~---ggq~F~-~~~~~kI~~l~~ 254 (277)
.+|.++.|. +-++.-.||. ...+..+.++|++. |...+. ++.-+++++|..
T Consensus 202 ~~L~~~ip~~~~~VsESGI~~~~d~~~l~~~G~davLIGeslm~~~dp~~~~~~l~~ 258 (695)
T PRK13802 202 NELAADLPDDVIKVAESGVFGAVEVEDYARAGADAVLVGEGVATADDHELAVERLVK 258 (695)
T ss_pred HHHHhhCCCCcEEEEcCCCCCHHHHHHHHHCCCCEEEECHHhhCCCCHHHHHHHHHh
Confidence 666777765 3333447775 35577788888774 666555 578888888864
No 263
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=89.29 E-value=17 Score=33.23 Aligned_cols=181 Identities=12% Similarity=0.079 Sum_probs=100.1
Q ss_pred HHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEEeccCCCCCH----HHHHHHHhhCCCcc-cc---hhhhhH
Q psy11600 53 PVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTFHVEPVDNVP----QVIRQIKEAGMKVG-QV---LQDWIE 124 (277)
Q Consensus 53 ~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~H~e~~d~g~----~~i~~i~~~~~~~~-d~---p~~~i~ 124 (277)
.+-+.|++- ...+-.++...+| ...+.+..+|-|++.+..|-...+. ..+.+++.....++ -+ -..++.
T Consensus 8 ~lk~~L~~G--~~~~G~~~~~~sp-~~~E~~a~~GfD~v~iD~EHg~~~~~~l~~~i~a~~~~g~~~lVRvp~~~~~~i~ 84 (267)
T PRK10128 8 PFKEGLRKG--EVQIGLWLSSTTS-YMAEIAATSGYDWLLIDGEHAPNTIQDLYHQLQAIAPYASQPVIRPVEGSKPLIK 84 (267)
T ss_pred HHHHHHHcC--CceEEEEecCCCc-HHHHHHHHcCCCEEEEccccCCCCHHHHHHHHHHHHhcCCCeEEECCCCCHHHHH
Confidence 455566653 4556677777777 4678889999999998888655533 34444444433332 33 245789
Q ss_pred HHHhcCCCeE-EeecCCCCChHHHHHHHHHhCCc----cceeeC--CCCCHHhHHHHHhhcCceEEEEecCCCCCchhhh
Q psy11600 125 PMADANVDQY-TFHVEPVDNVPQVIRQIKEAGMK----VGLAIK--PKTPVDVIAEYIESADLVLIMTVEPGFGGQKFMQ 197 (277)
Q Consensus 125 ~~~~~g~d~i-t~H~E~~~~~~~~~~~I~~~g~~----~g~~i~--p~t~~~~i~~~i~~~d~vl~mav~Pgt~gq~~~~ 197 (277)
...++||+-| .-|+| +.++..+.++...+. +|.+-. +........+|...++--++..+.-.|+
T Consensus 85 r~LD~GA~GIivP~V~---saeeA~~~V~a~rYpP~G~Rg~g~~~~r~~~yg~~~~y~~~an~~~~vi~qiEt~------ 155 (267)
T PRK10128 85 QVLDIGAQTLLIPMVD---TAEQARQVVSATRYPPYGERGVGASVARAARWGRIENYMAQANDSLCLLVQVESK------ 155 (267)
T ss_pred HHhCCCCCeeEecCcC---CHHHHHHHHHhcCCCCCCCCCCCCccchhhccCChHHHHHHhccccEEEEEECCH------
Confidence 9999999954 55777 777777777665332 333321 1111112346666554333333333442
Q ss_pred hhhhhHHHHHhhCCCccEEEeCCCCcCcHHHHHHccCCCCCcccccCHHHHHHHHH
Q psy11600 198 DMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKCLTGFGGQKFMQDMMPKVKWLR 253 (277)
Q Consensus 198 ~~l~kI~~l~~~~~~~~i~vdGgV~~~tv~~~~~~gpg~ggq~F~~~~~~kI~~l~ 253 (277)
+.++.++++.+. +.++...-|.-.+ .... |.-++...|+..+.++++.
T Consensus 156 ~a~~n~~~I~~~-~gvd~i~~G~~Dl-----s~sl--g~~~~~~~pev~~ai~~v~ 203 (267)
T PRK10128 156 TALDNLDEILDV-EGIDGVFIGPADL-----SASL--GYPDNAGHPEVQRIIETSI 203 (267)
T ss_pred HHHHhHHHHhCC-CCCCEEEECHHHH-----HHHc--CCCCCCCCHHHHHHHHHHH
Confidence 345566666653 6676665433321 1122 2335555565555555443
No 264
>PRK00957 methionine synthase; Provisional
Probab=89.26 E-value=8.5 Score=35.48 Aligned_cols=68 Identities=15% Similarity=0.252 Sum_probs=37.5
Q ss_pred HHHHHHHHHHcCCCEEEEeccccccccCCC---CCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeE
Q psy11600 20 LHSESQNLLDSGADYLHLDVMDGTFVPNLT---FGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQY 91 (277)
Q Consensus 20 l~~~~~~l~~~~~~~~h~DimDg~fvp~~~---~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i 91 (277)
+.++++.|.+.|++++.+| |-.+..++. +-.+.++.+.+. -+..+.+|+- .+.....+.+.+.++|.+
T Consensus 146 ~~~~i~~l~~~G~~~IqiD--EP~l~~~~~~~~~~~~~~~~~~~~-i~~~v~lH~C-G~~~~i~~~l~~~~vd~i 216 (305)
T PRK00957 146 LRKEAEALEKAGVAMIQID--EPILSTGAYDLEVAKKAIDIITKG-LNVPVAMHVC-GDVSNIIDDLLKFNVDIL 216 (305)
T ss_pred HHHHHHHHHHcCCCEEEec--ChhhhcCCchHHHHHHHHHHHHHh-hCCceEEEEC-CCcHHHHHHHHhCCCCEE
Confidence 4577788899999998887 633332211 111223333222 1334455653 455555666666777777
No 265
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=89.25 E-value=0.81 Score=42.32 Aligned_cols=75 Identities=20% Similarity=0.298 Sum_probs=46.7
Q ss_pred hhhhHHHHHhhCCCccEEEeCCCCcCcHHH---HHHccCCC-CCcccccCHHHHHHHH-HhhCCCCeEEEeCCCCccCHH
Q psy11600 199 MMPKVKWLRENYPTLNIEVDGGVGPNTIDE---CAKCLTGF-GGQKFMQDMMPKVKWL-RENYPTLNIEVDGGVGPNTID 273 (277)
Q Consensus 199 ~l~kI~~l~~~~~~~~i~vdGgV~~~tv~~---~~~~gpg~-ggq~F~~~~~~kI~~l-~~~~~~~~I~VDGGI~~~~~~ 273 (277)
+.+.++.+++..+...++|. ++|.++ ..++|++. =--.|.++.++++.++ ++..++..+++-||||++|++
T Consensus 176 i~~av~~~r~~~~~~kIeVE----v~tleqa~ea~~agaDiI~LDn~~~e~l~~av~~~~~~~~~~~leaSGGI~~~ni~ 251 (284)
T PRK06096 176 WSGAINQLRRHAPEKKIVVE----ADTPKEAIAALRAQPDVLQLDKFSPQQATEIAQIAPSLAPHCTLSLAGGINLNTLK 251 (284)
T ss_pred HHHHHHHHHHhCCCCCEEEE----CCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHhhccCCCeEEEEECCCCHHHHH
Confidence 34456677776665445542 445555 45677774 1234555544444443 223567889999999999998
Q ss_pred HhhC
Q psy11600 274 ECAK 277 (277)
Q Consensus 274 ~~~~ 277 (277)
.+++
T Consensus 252 ~yA~ 255 (284)
T PRK06096 252 NYAD 255 (284)
T ss_pred HHHh
Confidence 8763
No 266
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=89.25 E-value=2 Score=40.01 Aligned_cols=82 Identities=18% Similarity=0.217 Sum_probs=60.4
Q ss_pred HHHHHHHhcCCCCeeeeeeeccCcH--HhHHHHHhcCCCeEEEeccCCCCCHHHHHHHHhhCCCc-ccc-hhhhhHHHHh
Q psy11600 53 PVVKCLRNKIPKAFFETHMMVQNPQ--QWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKV-GQV-LQDWIEPMAD 128 (277)
Q Consensus 53 ~~v~~l~~~~~~~~~d~Hlmv~~p~--~~i~~l~~ag~d~i~~H~e~~d~g~~~i~~i~~~~~~~-~d~-p~~~i~~~~~ 128 (277)
..++++|+. ++.||-+.+++..|. +.++.+.+.|++.+.++.-. ..++++.+|+..... .++ -.++.+...+
T Consensus 52 ~~i~~~~~~-t~~pfgvn~~~~~~~~~~~~~~~~~~~v~~v~~~~g~---p~~~i~~lk~~g~~v~~~v~s~~~a~~a~~ 127 (307)
T TIGR03151 52 KEIRKVKEL-TDKPFGVNIMLLSPFVDELVDLVIEEKVPVVTTGAGN---PGKYIPRLKENGVKVIPVVASVALAKRMEK 127 (307)
T ss_pred HHHHHHHHh-cCCCcEEeeecCCCCHHHHHHHHHhCCCCEEEEcCCC---cHHHHHHHHHcCCEEEEEcCCHHHHHHHHH
Confidence 446778864 888999998876544 45787889999999886432 235899999886543 344 3556788889
Q ss_pred cCCCeEEeec
Q psy11600 129 ANVDQYTFHV 138 (277)
Q Consensus 129 ~g~d~it~H~ 138 (277)
+|+|.|++|-
T Consensus 128 ~GaD~Ivv~g 137 (307)
T TIGR03151 128 AGADAVIAEG 137 (307)
T ss_pred cCCCEEEEEC
Confidence 9999999865
No 267
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=89.18 E-value=2.1 Score=39.22 Aligned_cols=26 Identities=15% Similarity=0.294 Sum_probs=23.1
Q ss_pred CCccEEEeCCCCcCcHHHHHHccCCC
Q psy11600 211 PTLNIEVDGGVGPNTIDECAKCLTGF 236 (277)
Q Consensus 211 ~~~~i~vdGgV~~~tv~~~~~~gpg~ 236 (277)
+++.+++-|||+.+|+.++.++|+++
T Consensus 229 ~~i~i~AsGGI~~~ni~~~~~~Gvd~ 254 (272)
T cd01573 229 PPVLLAAAGGINIENAAAYAAAGADI 254 (272)
T ss_pred CCceEEEECCCCHHHHHHHHHcCCcE
Confidence 45678899999999999999999996
No 268
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=89.09 E-value=0.86 Score=41.91 Aligned_cols=76 Identities=22% Similarity=0.373 Sum_probs=46.9
Q ss_pred hhhhhHHHHHhhCCC-ccEEEeCCCCcCcHHH---HHHccCCC-CCcccccCHHHHHHHHH-hhCCCCeEEEeCCCCccC
Q psy11600 198 DMMPKVKWLRENYPT-LNIEVDGGVGPNTIDE---CAKCLTGF-GGQKFMQDMMPKVKWLR-ENYPTLNIEVDGGVGPNT 271 (277)
Q Consensus 198 ~~l~kI~~l~~~~~~-~~i~vdGgV~~~tv~~---~~~~gpg~-ggq~F~~~~~~kI~~l~-~~~~~~~I~VDGGI~~~~ 271 (277)
.+.+.++++++..|. ..+.|+ ..|.++ ..++|+|+ .-..|.++.+++.-+.+ ..+++..+++-||||++|
T Consensus 167 ~i~~~v~~~k~~~p~~~~I~VE----v~tleea~~A~~~GaDiI~LDn~~~e~l~~~v~~~~~~~~~~~ieAsGgIt~~n 242 (273)
T PRK05848 167 DLKEFIQHARKNIPFTAKIEIE----CESLEEAKNAMNAGADIVMCDNMSVEEIKEVVAYRNANYPHVLLEASGNITLEN 242 (273)
T ss_pred cHHHHHHHHHHhCCCCceEEEE----eCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHhhccCCCeEEEEECCCCHHH
Confidence 445567778887773 555553 455555 45577774 32444444344333322 234678899999999999
Q ss_pred HHHhhC
Q psy11600 272 IDECAK 277 (277)
Q Consensus 272 ~~~~~~ 277 (277)
++++++
T Consensus 243 i~~ya~ 248 (273)
T PRK05848 243 INAYAK 248 (273)
T ss_pred HHHHHH
Confidence 988763
No 269
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=89.08 E-value=1.8 Score=41.00 Aligned_cols=114 Identities=15% Similarity=0.252 Sum_probs=65.5
Q ss_pred HHHHHHHHHHcCCCEEEEeccc----------------------cccccCCCCCHHHHHHHHhcCC-----CCeeeeeee
Q psy11600 20 LHSESQNLLDSGADYLHLDVMD----------------------GTFVPNLTFGHPVVKCLRNKIP-----KAFFETHMM 72 (277)
Q Consensus 20 l~~~~~~l~~~~~~~~h~DimD----------------------g~fvp~~~~g~~~v~~l~~~~~-----~~~~d~Hlm 72 (277)
+.+..++++++|.|. |+|-= |.+-....|-.++++.+|+..+ +.++-+.+-
T Consensus 146 f~~aA~~a~~aGfDg--Veih~ahGyLl~qFlsp~~N~R~D~yGGslenR~r~~~eii~~vr~~vg~~~~~~~~v~~R~s 223 (353)
T cd04735 146 FGEATRRAIEAGFDG--VEIHGANGYLIQQFFSPHSNRRTDEWGGSLENRMRFPLAVVKAVQEVIDKHADKDFILGYRFS 223 (353)
T ss_pred HHHHHHHHHHcCCCE--EEEccccchHHHHhcCCccCCCCcccCCcHHHHHHHHHHHHHHHHHHhccccCCCceEEEEEC
Confidence 345556788899999 44422 2222333455689999999863 566666554
Q ss_pred ccC-------cH---HhHHHHHhcCCCeEEEeccCCC--------CCHHHHHHHHhhC--CCcccc------hhhhhHHH
Q psy11600 73 VQN-------PQ---QWIEPMADANVDQYTFHVEPVD--------NVPQVIRQIKEAG--MKVGQV------LQDWIEPM 126 (277)
Q Consensus 73 v~~-------p~---~~i~~l~~ag~d~i~~H~e~~d--------~g~~~i~~i~~~~--~~~~d~------p~~~i~~~ 126 (277)
..+ ++ +.++.+.++|+|++++|.-... .+....+++++.. ..|+-. |++--+.+
T Consensus 224 ~~~~~~~g~~~ee~~~i~~~L~~~GvD~I~Vs~g~~~~~~~~~~~~~~~~~~~ik~~~~~~iPVi~~Ggi~t~e~ae~~l 303 (353)
T cd04735 224 PEEPEEPGIRMEDTLALVDKLADKGLDYLHISLWDFDRKSRRGRDDNQTIMELVKERIAGRLPLIAVGSINTPDDALEAL 303 (353)
T ss_pred cccccCCCCCHHHHHHHHHHHHHcCCCEEEeccCccccccccCCcchHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHH
Confidence 332 22 3467888999999988742110 1345566666654 333322 55533333
Q ss_pred HhcCCCeEEe
Q psy11600 127 ADANVDQYTF 136 (277)
Q Consensus 127 ~~~g~d~it~ 136 (277)
+.|+|.|.+
T Consensus 304 -~~gaD~V~~ 312 (353)
T cd04735 304 -ETGADLVAI 312 (353)
T ss_pred -HcCCChHHH
Confidence 337776654
No 270
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=89.04 E-value=5.8 Score=36.71 Aligned_cols=128 Identities=13% Similarity=0.161 Sum_probs=95.1
Q ss_pred eeccccCcccHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeee---------------eecc
Q psy11600 10 PSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETH---------------MMVQ 74 (277)
Q Consensus 10 ~s~~~~d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~H---------------lmv~ 74 (277)
|=.+..|-..--+.+.++.+.|.+++-+|--.=+|-.|+...-++++.-++. ++.+++= -...
T Consensus 79 PV~lHLDHg~~~e~i~~ai~~GftSVM~DgS~lp~eeNi~~Trevv~~Ah~~--gv~VEaElG~igg~ed~~~~~~~~yT 156 (285)
T PRK07709 79 PVAIHLDHGSSFEKCKEAIDAGFTSVMIDASHHPFEENVETTKKVVEYAHAR--NVSVEAELGTVGGQEDDVIAEGVIYA 156 (285)
T ss_pred cEEEECCCCCCHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHc--CCEEEEEEeccCCccCCcccccccCC
Confidence 5566777775556677777889999999877777777888877777776653 3333321 2246
Q ss_pred CcHHhHHHHHhcCCCeEEEeccCCCC--------CHHHHHHHHhhCCCcccc------hhhhhHHHHhcCCCeEEeecC
Q psy11600 75 NPQQWIEPMADANVDQYTFHVEPVDN--------VPQVIRQIKEAGMKVGQV------LQDWIEPMADANVDQYTFHVE 139 (277)
Q Consensus 75 ~p~~~i~~l~~ag~d~i~~H~e~~d~--------g~~~i~~i~~~~~~~~d~------p~~~i~~~~~~g~d~it~H~E 139 (277)
+|++-.+.+.+.|+|.+.+=+-..-| -.+.++.|++....|+-+ |++.+...+++|+.-|-+..|
T Consensus 157 ~peeA~~Fv~~TgvD~LAvaiGt~HG~Y~~~p~L~~~~L~~I~~~~~iPLVLHGgSG~~~e~~~~ai~~Gi~KiNi~T~ 235 (285)
T PRK07709 157 DPAECKHLVEATGIDCLAPALGSVHGPYKGEPNLGFAEMEQVRDFTGVPLVLHGGTGIPTADIEKAISLGTSKINVNTE 235 (285)
T ss_pred CHHHHHHHHHHhCCCEEEEeecccccCcCCCCccCHHHHHHHHHHHCCCEEEeCCCCCCHHHHHHHHHcCCeEEEeChH
Confidence 89888888888999999765543322 677899999987666533 999999999999999999876
No 271
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=89.00 E-value=7.1 Score=36.36 Aligned_cols=147 Identities=19% Similarity=0.174 Sum_probs=83.6
Q ss_pred HhHHHHHhcCCC-eEEEeccCCC--CCHHHHHHHHhhCCCcccc------h--hhhhHHHHhcCCCeEEeecCCCCChHH
Q psy11600 78 QWIEPMADANVD-QYTFHVEPVD--NVPQVIRQIKEAGMKVGQV------L--QDWIEPMADANVDQYTFHVEPVDNVPQ 146 (277)
Q Consensus 78 ~~i~~l~~ag~d-~i~~H~e~~d--~g~~~i~~i~~~~~~~~d~------p--~~~i~~~~~~g~d~it~H~E~~~~~~~ 146 (277)
+.+..+.++|.= .+ +...++ .-...|+++|+.+..|+-+ | .++++.+.+.|++.|+++.. .+..
T Consensus 26 ~la~avs~aGglG~l--~~~~~~~~~l~~~i~~~~~~t~~pfgvn~~~~~~~~~~~~~~~~~~~v~~v~~~~g---~p~~ 100 (307)
T TIGR03151 26 SLAAAVSNAGGLGII--GAGNAPPDVVRKEIRKVKELTDKPFGVNIMLLSPFVDELVDLVIEEKVPVVTTGAG---NPGK 100 (307)
T ss_pred HHHHHHHhCCCccee--ccccCCHHHHHHHHHHHHHhcCCCcEEeeecCCCCHHHHHHHHHhCCCCEEEEcCC---CcHH
Confidence 355566666532 33 321111 1224466777766655432 2 46778888999999999876 6767
Q ss_pred HHHHHHHhCCccceeeCCCCCHHhHHHHHh-hcCceEEEEecCC-CCCchhhhhhhhhHHHHHhhCCCccEEEeCCCCc-
Q psy11600 147 VIRQIKEAGMKVGLAIKPKTPVDVIAEYIE-SADLVLIMTVEPG-FGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGP- 223 (277)
Q Consensus 147 ~~~~I~~~g~~~g~~i~p~t~~~~i~~~i~-~~d~vl~mav~Pg-t~gq~~~~~~l~kI~~l~~~~~~~~i~vdGgV~~- 223 (277)
.++.+++.|.+. -... ++++......+ -+|.+.+-..+.| ..+. ...+.-+.++++.. ++-+...|||.-
T Consensus 101 ~i~~lk~~g~~v--~~~v-~s~~~a~~a~~~GaD~Ivv~g~eagGh~g~---~~~~~ll~~v~~~~-~iPviaaGGI~~~ 173 (307)
T TIGR03151 101 YIPRLKENGVKV--IPVV-ASVALAKRMEKAGADAVIAEGMESGGHIGE---LTTMALVPQVVDAV-SIPVIAAGGIADG 173 (307)
T ss_pred HHHHHHHcCCEE--EEEc-CCHHHHHHHHHcCCCEEEEECcccCCCCCC---CcHHHHHHHHHHHh-CCCEEEECCCCCH
Confidence 888888876432 1122 23433333322 3676655444443 2221 12344455555433 467899999975
Q ss_pred CcHHHHHHccCCC
Q psy11600 224 NTIDECAKCLTGF 236 (277)
Q Consensus 224 ~tv~~~~~~gpg~ 236 (277)
..+..+...|++.
T Consensus 174 ~~~~~al~~GA~g 186 (307)
T TIGR03151 174 RGMAAAFALGAEA 186 (307)
T ss_pred HHHHHHHHcCCCE
Confidence 3366777788885
No 272
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=88.98 E-value=5.4 Score=36.88 Aligned_cols=128 Identities=15% Similarity=0.138 Sum_probs=95.0
Q ss_pred eeccccCcccHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeee-----------------eee
Q psy11600 10 PSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFET-----------------HMM 72 (277)
Q Consensus 10 ~s~~~~d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~-----------------Hlm 72 (277)
|=.+..|-..--+.+.+..+.|.+++-+|--.-+|=.|+..--++++.-++. ++.+++ .-+
T Consensus 76 PValHLDH~~~~e~i~~ai~~GftSVMiDgS~lp~eeNi~~T~~vv~~Ah~~--gvsVEaElG~igg~e~~~~~~~~~~~ 153 (284)
T PRK12737 76 PLALHLDHHEDLDDIKKKVRAGIRSVMIDGSHLSFEENIAIVKEVVEFCHRY--DASVEAELGRLGGQEDDLVVDEKDAM 153 (284)
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCeEEecCCCCCHHHHHHHHHHHHHHHHHc--CCEEEEEEeeccCccCCccccccccc
Confidence 5556677666557777888889999999877777877888877788777753 333322 123
Q ss_pred ccCcHHhHHHHHhcCCCeEEEeccCCCC--------CHHHHHHHHhhCCCcccc------hhhhhHHHHhcCCCeEEeec
Q psy11600 73 VQNPQQWIEPMADANVDQYTFHVEPVDN--------VPQVIRQIKEAGMKVGQV------LQDWIEPMADANVDQYTFHV 138 (277)
Q Consensus 73 v~~p~~~i~~l~~ag~d~i~~H~e~~d~--------g~~~i~~i~~~~~~~~d~------p~~~i~~~~~~g~d~it~H~ 138 (277)
..+|++-.+.+.+.|+|.+.+=+-..-| -.+.++.|++.+..|+-+ |++.+...+++|+.-|-+..
T Consensus 154 ~T~peeA~~Fv~~TgvD~LAvaiGt~HG~y~~~p~Ld~~~L~~I~~~~~iPLVlHGgSG~~~e~~~kai~~Gi~KiNi~T 233 (284)
T PRK12737 154 YTNPDAAAEFVERTGIDSLAVAIGTAHGLYKGEPKLDFERLAEIREKVSIPLVLHGASGVPDEDVKKAISLGICKVNVAT 233 (284)
T ss_pred CCCHHHHHHHHHHhCCCEEeeccCccccccCCCCcCCHHHHHHHHHHhCCCEEEeCCCCCCHHHHHHHHHCCCeEEEeCc
Confidence 5578888887788999999765544333 677899999987666532 99999999999999999977
Q ss_pred C
Q psy11600 139 E 139 (277)
Q Consensus 139 E 139 (277)
|
T Consensus 234 ~ 234 (284)
T PRK12737 234 E 234 (284)
T ss_pred H
Confidence 6
No 273
>PF03740 PdxJ: Pyridoxal phosphate biosynthesis protein PdxJ; InterPro: IPR004569 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. In Escherichia coli, the pdx genes involved in vitamin B6 have been characterised [, , ]. This entry represents PdxJ, which catalyses the condensation of 1-amino-3-oxo-4-(phosphohydroxy)propan-2-one and 1-deoxy-D-xylulose-5-phosphate to form pyridoxine-5'-phosphate. The product of the PdxJ reaction is then oxidized by PdxH to pyridoxal 5'-phosphate.; GO: 0008615 pyridoxine biosynthetic process, 0005737 cytoplasm; PDB: 3F4N_B 3O6D_A 3O6C_A 1M5W_G 1IXQ_D 1IXP_B 1IXN_A 1HO4_C 1HO1_A 1IXO_D ....
Probab=88.96 E-value=3.9 Score=36.86 Aligned_cols=172 Identities=12% Similarity=0.138 Sum_probs=85.6
Q ss_pred ccCcHHhHHHHHhcCCCeEEEeccCCCC--CHHHHHHHHhhCCCcccc----hhhhhHHHHhcCCCeEEeecCCCCChHH
Q psy11600 73 VQNPQQWIEPMADANVDQYTFHVEPVDN--VPQVIRQIKEAGMKVGQV----LQDWIEPMADANVDQYTFHVEPVDNVPQ 146 (277)
Q Consensus 73 v~~p~~~i~~l~~ag~d~i~~H~e~~d~--g~~~i~~i~~~~~~~~d~----p~~~i~~~~~~g~d~it~H~E~~~~~~~ 146 (277)
.-+|-+.......+|||.||+|.-.--. -.+-+..+|+....++.+ -++.++...+..++++|+=+| ...+
T Consensus 21 ~Pdpv~aA~~a~~aGAdgITvHlReDrRHI~d~Dv~~L~~~~~~~lNlE~a~t~e~~~ia~~~kP~~vtLVPE---~r~e 97 (239)
T PF03740_consen 21 YPDPVEAARIAEEAGADGITVHLREDRRHIQDRDVRRLRELVKTPLNLEMAPTEEMVDIALKVKPDQVTLVPE---KREE 97 (239)
T ss_dssp -S-HHHHHHHHHHTT-SEEEEEB-TT-SSS-HHHHHHHHHH-SSEEEEEEESSHHHHHHHHHH--SEEEEE-----SGGG
T ss_pred CCCHHHHHHHHHHcCCCEEEeccCCCcCcCCHHHHHHHHHHcccCEEeccCCCHHHHHHHHhCCcCEEEECCC---CCCC
Confidence 3467778888899999999999764211 456688888887665543 467888889999999999888 4322
Q ss_pred HHHHHHHhCCccceeeCCCCCHH---hHHHHHhhcCceEEEEecCCCCCchhhhhhhhhHHHHHhhCCCccEEEeCCCCc
Q psy11600 147 VIRQIKEAGMKVGLAIKPKTPVD---VIAEYIESADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGP 223 (277)
Q Consensus 147 ~~~~I~~~g~~~g~~i~p~t~~~---~i~~~i~~~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~~~~~i~vdGgV~~ 223 (277)
+ ...-|+......+ .+...++..++.+-+.++|.. +.|+..++..-. -++ +
T Consensus 98 ~---------TTegGldv~~~~~~l~~~i~~L~~~gIrvSLFiDP~~----------~qi~~A~~~Gad-~VE------L 151 (239)
T PF03740_consen 98 L---------TTEGGLDVAGNRDRLKPVIKRLKDAGIRVSLFIDPDP----------EQIEAAKELGAD-RVE------L 151 (239)
T ss_dssp B---------STTSSB-TCGGHHHHHHHHHHHHHTT-EEEEEE-S-H----------HHHHHHHHTT-S-EEE------E
T ss_pred c---------CCCcCChhhcCHHHHHHHHHHHHhCCCEEEEEeCCCH----------HHHHHHHHcCCC-EEE------E
Confidence 1 1223333333333 334445677888888888852 234444432211 111 1
Q ss_pred CcHHHHHHccCCCCCcccccCHHHHHHHHHhh--CCCCeEEEeCCCCccCHHHhh
Q psy11600 224 NTIDECAKCLTGFGGQKFMQDMMPKVKWLREN--YPTLNIEVDGGVGPNTIDECA 276 (277)
Q Consensus 224 ~tv~~~~~~gpg~ggq~F~~~~~~kI~~l~~~--~~~~~I~VDGGI~~~~~~~~~ 276 (277)
-|-..+-... .+.....+.++++....+. ...+.+..=.|+|.+|+..++
T Consensus 152 hTG~yA~a~~---~~~~~~~ell~~l~~aa~~a~~lGL~VnAGHgL~y~N~~~i~ 203 (239)
T PF03740_consen 152 HTGPYANAFD---DAEEAEEELLERLRDAARYAHELGLGVNAGHGLNYDNVRPIA 203 (239)
T ss_dssp ETHHHHHHSS---HHHHHHHHHHHHHHHHHHHHHHTT-EEEEETT--TTTHHHHH
T ss_pred ehhHhhhhcC---CHHHHHHHHHHHHHHHHHHHHHcCCEEecCCCCCHHHHHHHH
Confidence 2211111000 0000011113444443322 235778888999999988765
No 274
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=88.95 E-value=2.1 Score=39.42 Aligned_cols=79 Identities=11% Similarity=0.055 Sum_probs=54.5
Q ss_pred HHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEEeccCCCCCHHHHHHHHhhC--CCcccc----hhhhhHH
Q psy11600 52 HPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAG--MKVGQV----LQDWIEP 125 (277)
Q Consensus 52 ~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~H~e~~d~g~~~i~~i~~~~--~~~~d~----p~~~i~~ 125 (277)
...++..|+..|..+ +-+-+.+. +++....++|+|++ -+|. .+++.++++.+.. ..++.+ -.+-++.
T Consensus 177 ~~av~~~r~~~~~~~--I~VEv~tl-eea~eA~~~gaD~I--~LD~--~~~e~l~~~v~~~~~~i~leAsGGIt~~ni~~ 249 (277)
T PRK05742 177 AQAVAAAHRIAPGKP--VEVEVESL-DELRQALAAGADIV--MLDE--LSLDDMREAVRLTAGRAKLEASGGINESTLRV 249 (277)
T ss_pred HHHHHHHHHhCCCCe--EEEEeCCH-HHHHHHHHcCCCEE--EECC--CCHHHHHHHHHHhCCCCcEEEECCCCHHHHHH
Confidence 356778887655544 33445564 45666778999999 4553 4688888777654 335544 5778889
Q ss_pred HHhcCCCeEEee
Q psy11600 126 MADANVDQYTFH 137 (277)
Q Consensus 126 ~~~~g~d~it~H 137 (277)
++++|+|.|++-
T Consensus 250 ~a~tGvD~Isvg 261 (277)
T PRK05742 250 IAETGVDYISIG 261 (277)
T ss_pred HHHcCCCEEEEC
Confidence 999999999974
No 275
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=88.95 E-value=8.3 Score=34.83 Aligned_cols=116 Identities=8% Similarity=0.142 Sum_probs=73.2
Q ss_pred ccccCcccHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCC--CCeeeeeeec----------------
Q psy11600 12 ILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIP--KAFFETHMMV---------------- 73 (277)
Q Consensus 12 ~~~~d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~--~~~~d~Hlmv---------------- 73 (277)
++......++ +++++.+.|++. ++|- +... -++..++++.+.+. .+.+.+...-
T Consensus 78 ~~gGGi~s~~-d~~~l~~~G~~~--vvig-s~~~----~~~~~~~~~~~~~~~~~i~vsiD~k~g~~~~~~v~~~gw~~~ 149 (258)
T PRK01033 78 CYGGGIKTLE-QAKKIFSLGVEK--VSIN-TAAL----EDPDLITEAAERFGSQSVVVSIDVKKNLGGKFDVYTHNGTKK 149 (258)
T ss_pred EECCCCCCHH-HHHHHHHCCCCE--EEEC-hHHh----cCHHHHHHHHHHhCCCcEEEEEEEecCCCCcEEEEEcCCeec
Confidence 4445555664 566666789998 5542 2122 25778888887765 3555555432
Q ss_pred --cCcHHhHHHHHhcCCCeEEEeccCCCC-----CHHHHHHHHhhCCCcccc------hhhhhHHHHhcCCCeEE
Q psy11600 74 --QNPQQWIEPMADANVDQYTFHVEPVDN-----VPQVIRQIKEAGMKVGQV------LQDWIEPMADANVDQYT 135 (277)
Q Consensus 74 --~~p~~~i~~l~~ag~d~i~~H~e~~d~-----g~~~i~~i~~~~~~~~d~------p~~~i~~~~~~g~d~it 135 (277)
.+|.+.++.+.+.|++.+.+|--..+| -.+.++++++....|+-. +++..+.+.+.|++-+.
T Consensus 150 ~~~~~~e~~~~~~~~g~~~ii~~~i~~~G~~~G~d~~~i~~~~~~~~ipvIasGGv~s~eD~~~l~~~~GvdgVi 224 (258)
T PRK01033 150 LKKDPLELAKEYEALGAGEILLNSIDRDGTMKGYDLELLKSFRNALKIPLIALGGAGSLDDIVEAILNLGADAAA 224 (258)
T ss_pred CCCCHHHHHHHHHHcCCCEEEEEccCCCCCcCCCCHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHHCCCCEEE
Confidence 247778899999999999999433333 356688888776666533 55555555566777554
No 276
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=88.92 E-value=6.5 Score=35.35 Aligned_cols=117 Identities=11% Similarity=0.169 Sum_probs=70.5
Q ss_pred ccccCcccHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCC--CCeeeeeee-----------------
Q psy11600 12 ILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIP--KAFFETHMM----------------- 72 (277)
Q Consensus 12 ~~~~d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~--~~~~d~Hlm----------------- 72 (277)
+......+.+ .++++...|++.+ +.-..+.. .|+.++++.+.|+ ++.+.+.+.
T Consensus 78 ~~~GGi~s~~-d~~~~~~~Ga~~v---ivgt~~~~----~p~~~~~~~~~~~~~~iv~slD~~~g~~~~~~~~~v~i~gw 149 (254)
T TIGR00735 78 TVGGGIKSIE-DVDKLLRAGADKV---SINTAAVK----NPELIYELADRFGSQCIVVAIDAKRVYVNSYCWYEVYIYGG 149 (254)
T ss_pred EEECCCCCHH-HHHHHHHcCCCEE---EEChhHhh----ChHHHHHHHHHcCCCCEEEEEEeccCCCCCCccEEEEEeCC
Confidence 3344444554 4445556788883 33333432 5788889888886 345555432
Q ss_pred ----ccCcHHhHHHHHhcCCCeEEEeccCCCC-----CHHHHHHHHhhCCCcccc------hhhhhHHHHhcCCCeEEe
Q psy11600 73 ----VQNPQQWIEPMADANVDQYTFHVEPVDN-----VPQVIRQIKEAGMKVGQV------LQDWIEPMADANVDQYTF 136 (277)
Q Consensus 73 ----v~~p~~~i~~l~~ag~d~i~~H~e~~d~-----g~~~i~~i~~~~~~~~d~------p~~~i~~~~~~g~d~it~ 136 (277)
-.++.++++.+.++|++.+.+|--..+| ...+++++++.+..|+-. |++..+.+..-|++.+.+
T Consensus 150 ~~~~~~~~~~~~~~l~~~G~~~iivt~i~~~g~~~g~~~~~~~~i~~~~~ipvia~GGi~s~~di~~~~~~g~~dgv~~ 228 (254)
T TIGR00735 150 RESTGLDAVEWAKEVEKLGAGEILLTSMDKDGTKSGYDLELTKAVSEAVKIPVIASGGAGKPEHFYEAFTKGKADAALA 228 (254)
T ss_pred cccCCCCHHHHHHHHHHcCCCEEEEeCcCcccCCCCCCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCcceeeE
Confidence 1345677899999999999888433332 347788888877665533 454444444333766543
No 277
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=88.92 E-value=16 Score=33.63 Aligned_cols=193 Identities=11% Similarity=0.116 Sum_probs=96.3
Q ss_pred ccCcccHHHHHHHHHHcCCCEEEEecccccc--ccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeE
Q psy11600 14 NSDLSNLHSESQNLLDSGADYLHLDVMDGTF--VPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQY 91 (277)
Q Consensus 14 ~~d~~~l~~~~~~l~~~~~~~~h~DimDg~f--vp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i 91 (277)
+.|+..+..-++..++.+...+ +-+-.++. .+.+..=...++.+.+.++..|+-+||==....+.++...++|.+++
T Consensus 23 ~~n~e~~~avi~aAe~~~~PvI-l~~~~~~~~~~~~~~~~~~~~~~~a~~~~~vpv~lhlDH~~~~e~i~~ai~~Gf~sV 101 (282)
T TIGR01859 23 FNNLEWTQAILEAAEEENSPVI-IQVSEGAIKYMGGYKMAVAMVKTLIERMSIVPVALHLDHGSSYESCIKAIKAGFSSV 101 (282)
T ss_pred ECCHHHHHHHHHHHHHhCCCEE-EEcCcchhhccCcHHHHHHHHHHHHHHCCCCeEEEECCCCCCHHHHHHHHHcCCCEE
Confidence 3455556667777777777653 23333322 11111112455666666433899999965557778888999999998
Q ss_pred EEeccCCCCCHH-HHHHHHhhCCCcccchhhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCCccceeeCCCCCHHh
Q psy11600 92 TFHVEPVDNVPQ-VIRQIKEAGMKVGQVLQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDV 170 (277)
Q Consensus 92 ~~H~e~~d~g~~-~i~~i~~~~~~~~d~p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~i~p~t~~~~ 170 (277)
++|..+...+ .++..++ .++...+.|+ ++..|-+ .... ++ ....| .-..-|+++.
T Consensus 102 --mid~s~l~~~eni~~t~~-----------v~~~a~~~gv---~Ve~ElG-~~gg-----~e-d~~~g-~~~~~t~~ee 157 (282)
T TIGR01859 102 --MIDGSHLPFEENLALTKK-----------VVEIAHAKGV---SVEAELG-TLGG-----IE-DGVDE-KEAELADPDE 157 (282)
T ss_pred --EECCCCCCHHHHHHHHHH-----------HHHHHHHcCC---EEEEeeC-CCcC-----cc-ccccc-cccccCCHHH
Confidence 8776543211 2222211 2222223332 2222200 0000 00 00001 0011345555
Q ss_pred HHHHHh--hcCceEEEEecC---CCCC-chhhhhhhhhHHHHHhhCCCccEEEeC--CCCcCcHHHHHHccCCC
Q psy11600 171 IAEYIE--SADLVLIMTVEP---GFGG-QKFMQDMMPKVKWLRENYPTLNIEVDG--GVGPNTIDECAKCLTGF 236 (277)
Q Consensus 171 i~~~i~--~~d~vl~mav~P---gt~g-q~~~~~~l~kI~~l~~~~~~~~i~vdG--gV~~~tv~~~~~~gpg~ 236 (277)
..++.+ .+|++. .++-| -+.+ ..+- ++.++++++.. .+-++.-| |++.+++.++.++|..-
T Consensus 158 a~~f~~~tgvD~La-vs~Gt~hg~~~~~~~l~---~e~L~~i~~~~-~iPlv~hGgSGi~~e~i~~~i~~Gi~k 226 (282)
T TIGR01859 158 AEQFVKETGVDYLA-AAIGTSHGKYKGEPGLD---FERLKEIKELT-NIPLVLHGASGIPEEQIKKAIKLGIAK 226 (282)
T ss_pred HHHHHHHHCcCEEe-eccCccccccCCCCccC---HHHHHHHHHHh-CCCEEEECCCCCCHHHHHHHHHcCCCE
Confidence 555554 355532 21111 1111 1122 34455555443 36788999 99999999999988773
No 278
>PLN02428 lipoic acid synthase
Probab=88.85 E-value=4.5 Score=38.54 Aligned_cols=86 Identities=22% Similarity=0.373 Sum_probs=54.1
Q ss_pred cCcccHHHHHHHHHHcCCCEEEE------eccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccC---cHHhHHHHHh
Q psy11600 15 SDLSNLHSESQNLLDSGADYLHL------DVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQN---PQQWIEPMAD 85 (277)
Q Consensus 15 ~d~~~l~~~~~~l~~~~~~~~h~------DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~---p~~~i~~l~~ 85 (277)
.|.....+..+.+.+.|++++++ |.-|+.+ ..=.++++.||+..|.+.+.+ .+.+ -.+.++.+.+
T Consensus 130 ~d~~Ep~~vA~~v~~~Glk~vvltSg~rddl~D~ga----~~~~elir~Ir~~~P~i~Ie~--L~pdf~~d~elL~~L~e 203 (349)
T PLN02428 130 PDPDEPENVAEAIASWGVDYVVLTSVDRDDLPDGGS----GHFAETVRRLKQLKPEILVEA--LVPDFRGDLGAVETVAT 203 (349)
T ss_pred CChhhHHHHHHHHHHcCCCEEEEEEcCCCCCCcccH----HHHHHHHHHHHHhCCCcEEEE--eCccccCCHHHHHHHHH
Confidence 45556667778888889999887 3333221 122477888888766543333 2112 1457999999
Q ss_pred cCCCeEEEeccCCCCCHHHHHHHH
Q psy11600 86 ANVDQYTFHVEPVDNVPQVIRQIK 109 (277)
Q Consensus 86 ag~d~i~~H~e~~d~g~~~i~~i~ 109 (277)
+|++.++...|. .+.+-+.++
T Consensus 204 AG~d~i~hnlET---v~rL~~~Ir 224 (349)
T PLN02428 204 SGLDVFAHNIET---VERLQRIVR 224 (349)
T ss_pred cCCCEEccCccC---cHHHHHHhc
Confidence 999998655553 344555454
No 279
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=88.85 E-value=27 Score=34.92 Aligned_cols=69 Identities=14% Similarity=0.326 Sum_probs=43.5
Q ss_pred HHHHHHHHcCCCEEEEeccccc-cccCCCC---C-HHHHHHHHhcCCCCeeeeeeecc-------Cc----HHhHHHHHh
Q psy11600 22 SESQNLLDSGADYLHLDVMDGT-FVPNLTF---G-HPVVKCLRNKIPKAFFETHMMVQ-------NP----QQWIEPMAD 85 (277)
Q Consensus 22 ~~~~~l~~~~~~~~h~DimDg~-fvp~~~~---g-~~~v~~l~~~~~~~~~d~Hlmv~-------~p----~~~i~~l~~ 85 (277)
.-.+.+.+.|++. +.+.=|. |--++.| . .+.++.+|+..|+.++-..+--. .| ...++...+
T Consensus 31 ~ia~~ld~~G~~s--iE~~GGatfd~~~rfl~Edpwerlr~lr~~~~nt~lqmL~Rg~N~vGy~~y~ddvv~~fv~~a~~ 108 (499)
T PRK12330 31 GACEDIDNAGYWS--VECWGGATFDACIRFLNEDPWERLRTFRKLMPNSRLQMLLRGQNLLGYRHYEDEVVDRFVEKSAE 108 (499)
T ss_pred HHHHHHHhcCCCE--EEecCCcchhhhhcccCCCHHHHHHHHHHhCCCCeEEEEEcccccCCccCcchhHHHHHHHHHHH
Confidence 4445566677777 6666332 4333444 3 36799999988888877655211 23 335777788
Q ss_pred cCCCeEE
Q psy11600 86 ANVDQYT 92 (277)
Q Consensus 86 ag~d~i~ 92 (277)
+|+|+++
T Consensus 109 ~Gidi~R 115 (499)
T PRK12330 109 NGMDVFR 115 (499)
T ss_pred cCCCEEE
Confidence 8999983
No 280
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=88.84 E-value=5.4 Score=36.84 Aligned_cols=128 Identities=14% Similarity=0.139 Sum_probs=95.0
Q ss_pred eeccccCcccHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeee-----------------eee
Q psy11600 10 PSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFET-----------------HMM 72 (277)
Q Consensus 10 ~s~~~~d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~-----------------Hlm 72 (277)
|=.+..|-..-.+.+.+..+.|.+++-+|--.-+|=.|+..--++++.-++. ++.+++ .-+
T Consensus 74 PValHLDHg~~~e~i~~ai~~GFtSVM~DgS~lp~eeNi~~T~~vv~~Ah~~--gv~VEaElG~vgg~e~~~~~~~~~~~ 151 (282)
T TIGR01858 74 PLALHLDHHESLDDIRQKVHAGVRSAMIDGSHFPFAQNVKLVKEVVDFCHRQ--DCSVEAELGRLGGVEDDLSVDEEDAL 151 (282)
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCEEeecCCCCCHHHHHHHHHHHHHHHHHc--CCeEEEEEEecCCccCCCccccchhc
Confidence 4556677776667788888899999999877777877887777777776653 333322 123
Q ss_pred ccCcHHhHHHHHhcCCCeEEEeccCCCC--------CHHHHHHHHhhCCCcccc------hhhhhHHHHhcCCCeEEeec
Q psy11600 73 VQNPQQWIEPMADANVDQYTFHVEPVDN--------VPQVIRQIKEAGMKVGQV------LQDWIEPMADANVDQYTFHV 138 (277)
Q Consensus 73 v~~p~~~i~~l~~ag~d~i~~H~e~~d~--------g~~~i~~i~~~~~~~~d~------p~~~i~~~~~~g~d~it~H~ 138 (277)
..+|++-.+.+.+.|+|++.+=+-..-| -.+.++.|++.+..|+-+ |++.+...+++|..-|-+..
T Consensus 152 ~T~peea~~Fv~~TgvD~LAvaiGt~HG~yk~~p~Ldf~~L~~I~~~~~iPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~T 231 (282)
T TIGR01858 152 YTDPQEAKEFVEATGVDSLAVAIGTAHGLYKKTPKLDFDRLAEIREVVDVPLVLHGASDVPDEDVRRTIELGICKVNVAT 231 (282)
T ss_pred cCCHHHHHHHHHHHCcCEEecccCccccCcCCCCccCHHHHHHHHHHhCCCeEEecCCCCCHHHHHHHHHcCCeEEEeCc
Confidence 5578777777778999999765554333 678999999988766533 99999999999999999977
Q ss_pred C
Q psy11600 139 E 139 (277)
Q Consensus 139 E 139 (277)
|
T Consensus 232 ~ 232 (282)
T TIGR01858 232 E 232 (282)
T ss_pred H
Confidence 6
No 281
>PRK08999 hypothetical protein; Provisional
Probab=88.76 E-value=6.5 Score=36.18 Aligned_cols=35 Identities=20% Similarity=0.220 Sum_probs=26.1
Q ss_pred hhHHHHHhhCCCccEEEeCCCCcCcHHHHHHccCCC
Q psy11600 201 PKVKWLRENYPTLNIEVDGGVGPNTIDECAKCLTGF 236 (277)
Q Consensus 201 ~kI~~l~~~~~~~~i~vdGgV~~~tv~~~~~~gpg~ 236 (277)
+.++++++. .++-+...|||+.+|+.++.++|++.
T Consensus 270 ~~~~~~~~~-~~~Pv~AiGGI~~~~~~~~~~~g~~g 304 (312)
T PRK08999 270 EGFAALIAG-VPLPVYALGGLGPGDLEEAREHGAQG 304 (312)
T ss_pred HHHHHHHHh-CCCCEEEECCCCHHHHHHHHHhCCCE
Confidence 344554432 34678899999999999999988764
No 282
>PRK07094 biotin synthase; Provisional
Probab=88.66 E-value=20 Score=33.14 Aligned_cols=163 Identities=14% Similarity=0.170 Sum_probs=88.0
Q ss_pred HhHHHHHhcCCCeEEEeccCCC-C----CHHHHHHHHhhCCCcc--c---chhhhhHHHHhcCCCeEEeecCCCCCh-HH
Q psy11600 78 QWIEPMADANVDQYTFHVEPVD-N----VPQVIRQIKEAGMKVG--Q---VLQDWIEPMADANVDQYTFHVEPVDNV-PQ 146 (277)
Q Consensus 78 ~~i~~l~~ag~d~i~~H~e~~d-~----g~~~i~~i~~~~~~~~--d---~p~~~i~~~~~~g~d~it~H~E~~~~~-~~ 146 (277)
+.++.+.+.|+..+.+...-.. . -.++++.+++.....+ . ...+.++.|.++|++.+.+-+| +. ++
T Consensus 77 ~~~~~~~~~g~~~i~l~gG~~~~~~~~~l~~l~~~i~~~~~l~i~~~~g~~~~e~l~~Lk~aG~~~v~~glE---s~~~~ 153 (323)
T PRK07094 77 ECAKKAYELGYRTIVLQSGEDPYYTDEKIADIIKEIKKELDVAITLSLGERSYEEYKAWKEAGADRYLLRHE---TADKE 153 (323)
T ss_pred HHHHHHHHCCCCEEEEecCCCCCCCHHHHHHHHHHHHccCCceEEEecCCCCHHHHHHHHHcCCCEEEeccc---cCCHH
Confidence 3456666789999977632111 1 3345666666422211 1 2577899999999999999998 65 34
Q ss_pred HHHHHHHhCCccceeeCCCCCHHhHHH---HHhhcCceEEEEecCCCCCchhhhhhhhhHHHHHhhCCCccEEEeCCCCc
Q psy11600 147 VIRQIKEAGMKVGLAIKPKTPVDVIAE---YIESADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGP 223 (277)
Q Consensus 147 ~~~~I~~~g~~~g~~i~p~t~~~~i~~---~i~~~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~~~~~i~vdGgV~~ 223 (277)
+++.++ ++.+.+.+.+ .+.+.++.+...+--|.+|+.. ++..+.++.++++.+.. . +++.
T Consensus 154 ~~~~i~-----------~~~s~~~~~~~i~~l~~~Gi~v~~~~iiGlpget~-ed~~~~l~~l~~l~~~~--v---~~~~ 216 (323)
T PRK07094 154 LYAKLH-----------PGMSFENRIACLKDLKELGYEVGSGFMVGLPGQTL-EDLADDILFLKELDLDM--I---GIGP 216 (323)
T ss_pred HHHHhC-----------CCCCHHHHHHHHHHHHHcCCeecceEEEECCCCCH-HHHHHHHHHHHhCCCCe--e---eeec
Confidence 443332 2334444433 3455666555555556666543 56666666666544321 1 1111
Q ss_pred CcHHHHHHccCCC--CCccc--ccCHHHHHHHHHhhCCCCeEEEeCC
Q psy11600 224 NTIDECAKCLTGF--GGQKF--MQDMMPKVKWLRENYPTLNIEVDGG 266 (277)
Q Consensus 224 ~tv~~~~~~gpg~--ggq~F--~~~~~~kI~~l~~~~~~~~I~VDGG 266 (277)
.+- -||- ..... ..+.++.++.+|...|+..|..-++
T Consensus 217 ~~P------~pgTpl~~~~~~~~~~~~~~~a~~R~~lp~~~i~~~~~ 257 (323)
T PRK07094 217 FIP------HPDTPLKDEKGGSLELTLKVLALLRLLLPDANIPATTA 257 (323)
T ss_pred ccc------CCCCCcccCCCCCHHHHHHHHHHHHHhCcCCCCcccCC
Confidence 111 1331 11111 1234666666777777766655554
No 283
>PLN02389 biotin synthase
Probab=88.65 E-value=12 Score=35.96 Aligned_cols=78 Identities=10% Similarity=0.122 Sum_probs=44.6
Q ss_pred cCcccHHHHHHHHHHcCCCEEEEeccccc--cccCCCC--CHHHHHHHHhcCCCCeeeeeeeccC-cHHhHHHHHhcCCC
Q psy11600 15 SDLSNLHSESQNLLDSGADYLHLDVMDGT--FVPNLTF--GHPVVKCLRNKIPKAFFETHMMVQN-PQQWIEPMADANVD 89 (277)
Q Consensus 15 ~d~~~l~~~~~~l~~~~~~~~h~DimDg~--fvp~~~~--g~~~v~~l~~~~~~~~~d~Hlmv~~-p~~~i~~l~~ag~d 89 (277)
.+...+.+..+.+.+.|+..+|+ +..|. +-+...| =.+.++.+|+ ..+.++.-... ..+.++.|.++|+|
T Consensus 116 Ls~EeIl~~a~~~~~~G~~~~~i-vts~rg~~~e~~~~e~i~eiir~ik~----~~l~i~~s~G~l~~E~l~~LkeAGld 190 (379)
T PLN02389 116 MSKDDVLEAAKRAKEAGSTRFCM-GAAWRDTVGRKTNFNQILEYVKEIRG----MGMEVCCTLGMLEKEQAAQLKEAGLT 190 (379)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEE-EecccCCCCChhHHHHHHHHHHHHhc----CCcEEEECCCCCCHHHHHHHHHcCCC
Confidence 45566677777788889999886 22211 1111112 2245666653 22344432222 34568899999999
Q ss_pred eEEEeccC
Q psy11600 90 QYTFHVEP 97 (277)
Q Consensus 90 ~i~~H~e~ 97 (277)
.++.-+|.
T Consensus 191 ~~~~~LeT 198 (379)
T PLN02389 191 AYNHNLDT 198 (379)
T ss_pred EEEeeecC
Confidence 99544443
No 284
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=88.61 E-value=9.1 Score=34.82 Aligned_cols=108 Identities=25% Similarity=0.327 Sum_probs=67.5
Q ss_pred HHHHHHHHHhCCccceeeCCCCCHHhHHHHH---hhcCceEEEEecCCCCCchhhhhhhhhHHHHHhhCCCccEEE-eCC
Q psy11600 145 PQVIRQIKEAGMKVGLAIKPKTPVDVIAEYI---ESADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEV-DGG 220 (277)
Q Consensus 145 ~~~~~~I~~~g~~~g~~i~p~t~~~~i~~~i---~~~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~~~~~i~v-dGg 220 (277)
+++.+.++++|.. |+-+ |..|+++..++. +..++-++.-+.|.|+. ++++.+.+..+.+-..+ -.|
T Consensus 107 e~f~~~~~~aGvd-Gvii-pDLp~ee~~~~~~~~~~~gl~~I~lvap~t~~--------eri~~i~~~s~gfIY~vs~~G 176 (258)
T PRK13111 107 ERFAADAAEAGVD-GLII-PDLPPEEAEELRAAAKKHGLDLIFLVAPTTTD--------ERLKKIASHASGFVYYVSRAG 176 (258)
T ss_pred HHHHHHHHHcCCc-EEEE-CCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCH--------HHHHHHHHhCCCcEEEEeCCC
Confidence 4566777777622 4444 889998666654 56677777777888762 45666666555543322 111
Q ss_pred CCcCcHHHHHHccCCCCCcccccCHHHHHHHHHhhCCCCeEEEeCCC-CccCHHHhh
Q psy11600 221 VGPNTIDECAKCLTGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGV-GPNTIDECA 276 (277)
Q Consensus 221 V~~~tv~~~~~~gpg~ggq~F~~~~~~kI~~l~~~~~~~~I~VDGGI-~~~~~~~~~ 276 (277)
++ | ....+.++..+.++++|+.. +..+-|-||| |+++++++.
T Consensus 177 vT------------G-~~~~~~~~~~~~i~~vk~~~-~~pv~vGfGI~~~e~v~~~~ 219 (258)
T PRK13111 177 VT------------G-ARSADAADLAELVARLKAHT-DLPVAVGFGISTPEQAAAIA 219 (258)
T ss_pred CC------------C-cccCCCccHHHHHHHHHhcC-CCcEEEEcccCCHHHHHHHH
Confidence 11 1 12344456677888888754 5668899999 568877654
No 285
>cd08562 GDPD_EcUgpQ_like Glycerophosphodiester phosphodiesterase domain in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase UgpQ and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46), UgpQ, and similar proteins. GP-GDE plays an essential role in the metabolic pathway of E. coli. It catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols, which are major sources of carbon and phosphate. E. coli possesses two major G3P uptake systems: Glp and Ugp, which contain genes coding for two distinct GP-GDEs. UgpQ gene from the E. coli ugp operon codes for a cytosolic phosphodiesterase GlpQ, which is the prototype of this family. Various glycerophosphodiesters, such as glycerophosphocholine (GPC), glycerophosphoethanolanmine (GPE), glycerophosphoglycerol (GPG)
Probab=88.53 E-value=3 Score=36.30 Aligned_cols=85 Identities=16% Similarity=0.253 Sum_probs=56.2
Q ss_pred CCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEEeccCCCCCHHHHHHHHhhCCCcc--cc-hhhhhH
Q psy11600 48 LTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVG--QV-LQDWIE 124 (277)
Q Consensus 48 ~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~H~e~~d~g~~~i~~i~~~~~~~~--d~-p~~~i~ 124 (277)
.+|.++.++.+|+..|++++- .+....+....+.+.+.+++.+++++.. ..+++|+.+++.+..+. .+ -...+.
T Consensus 138 ~Sf~~~~l~~~~~~~p~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~g~~v~~wTvn~~~~~~ 214 (229)
T cd08562 138 SSFSLEALRAARRAAPELPLG-LLFDTLPADWLELLAALGAVSIHLNYRG--LTEEQVKALKDAGYKLLVYTVNDPARAA 214 (229)
T ss_pred ECCCHHHHHHHHHhCCCCcEE-EEecCCCcCHHHHHHHcCCeEEecChhh--CCHHHHHHHHHCCCEEEEEeCCCHHHHH
Confidence 468899999999988886552 2333345556666677788877444333 35788888888776533 22 244567
Q ss_pred HHHhcCCCeEE
Q psy11600 125 PMADANVDQYT 135 (277)
Q Consensus 125 ~~~~~g~d~it 135 (277)
.+.+.|+|.|+
T Consensus 215 ~~~~~gVdgii 225 (229)
T cd08562 215 ELLEWGVDAIF 225 (229)
T ss_pred HHHHCCCCEEE
Confidence 77788888765
No 286
>PRK06233 hypothetical protein; Provisional
Probab=88.49 E-value=14 Score=35.39 Aligned_cols=22 Identities=36% Similarity=0.588 Sum_probs=18.3
Q ss_pred HHHHHHHHHHcCCCEEEEeccc
Q psy11600 20 LHSESQNLLDSGADYLHLDVMD 41 (277)
Q Consensus 20 l~~~~~~l~~~~~~~~h~DimD 41 (277)
+.+|++.|.++|+++|.+|==.
T Consensus 173 ~~~Ei~~L~~aG~~~IQiDeP~ 194 (372)
T PRK06233 173 YHDTIQHFYDLGARYIQLDDTT 194 (372)
T ss_pred HHHHHHHHHHCCCCEEEEcCCC
Confidence 5688999999999999998433
No 287
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=88.42 E-value=7 Score=36.22 Aligned_cols=128 Identities=15% Similarity=0.162 Sum_probs=95.6
Q ss_pred eeccccCcccHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeee-----------------eee
Q psy11600 10 PSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFET-----------------HMM 72 (277)
Q Consensus 10 ~s~~~~d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~-----------------Hlm 72 (277)
|=.+..|-..--+.+.+..+.|.+++-+|--.-+|=-|+..--++++.-++. ++.+++ .-+
T Consensus 76 PValHLDHg~~~e~i~~ai~~GFtSVM~DgS~lp~eeNi~~T~evv~~Ah~~--gv~VEaElG~igg~ed~~~~~~~~~~ 153 (286)
T PRK12738 76 PLALHLDHHESLDDIRRKVHAGVRSAMIDGSHFPFAENVKLVKSVVDFCHSQ--DCSVEAELGRLGGVEDDMSVDAESAF 153 (286)
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCeEeecCCCCCHHHHHHHHHHHHHHHHHc--CCeEEEEEEeeCCccCCcccccchhc
Confidence 4456677775566777788889999999988878888888888888777753 333322 122
Q ss_pred ccCcHHhHHHHHhcCCCeEEEeccCCCC--------CHHHHHHHHhhCCCcccc------hhhhhHHHHhcCCCeEEeec
Q psy11600 73 VQNPQQWIEPMADANVDQYTFHVEPVDN--------VPQVIRQIKEAGMKVGQV------LQDWIEPMADANVDQYTFHV 138 (277)
Q Consensus 73 v~~p~~~i~~l~~ag~d~i~~H~e~~d~--------g~~~i~~i~~~~~~~~d~------p~~~i~~~~~~g~d~it~H~ 138 (277)
..+|++-.+...+.|+|++.+=+-..-| -.+.++.|++.++.|+-+ |++.+...+++|..-|-+..
T Consensus 154 ~T~peea~~Fv~~TgvD~LAvaiGt~HG~Y~~~p~Ldfd~l~~I~~~~~vPLVLHGgSG~~~e~~~kai~~GI~KiNi~T 233 (286)
T PRK12738 154 LTDPQEAKRFVELTGVDSLAVAIGTAHGLYSKTPKIDFQRLAEIREVVDVPLVLHGASDVPDEFVRRTIELGVTKVNVAT 233 (286)
T ss_pred CCCHHHHHHHHHHhCCCEEEeccCcccCCCCCCCcCCHHHHHHHHHHhCCCEEEeCCCCCCHHHHHHHHHcCCeEEEeCc
Confidence 4578887877778899999776654333 678899999988776533 89999999999999999977
Q ss_pred C
Q psy11600 139 E 139 (277)
Q Consensus 139 E 139 (277)
|
T Consensus 234 ~ 234 (286)
T PRK12738 234 E 234 (286)
T ss_pred H
Confidence 6
No 288
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=88.35 E-value=20 Score=36.59 Aligned_cols=72 Identities=19% Similarity=0.338 Sum_probs=44.4
Q ss_pred cHHHHHHHHHHcCCCEEEEecccc-ccccCCCC---C-HHHHHHHHhcCCCCeeeeeeeccCc-----------HHhHHH
Q psy11600 19 NLHSESQNLLDSGADYLHLDVMDG-TFVPNLTF---G-HPVVKCLRNKIPKAFFETHMMVQNP-----------QQWIEP 82 (277)
Q Consensus 19 ~l~~~~~~l~~~~~~~~h~DimDg-~fvp~~~~---g-~~~v~~l~~~~~~~~~d~Hlmv~~p-----------~~~i~~ 82 (277)
..-.-++.|.+.|++. +.+.-| +|--++.| . .+.++.+|+..|+.++-+.+-..|. ...++.
T Consensus 27 d~l~ia~~l~~~G~~~--iE~~ggatfd~~~rfl~edp~e~l~~l~~~~~~~~l~~l~Rg~N~~gy~~ypd~vv~~~v~~ 104 (592)
T PRK09282 27 DMLPIAEKLDKVGFWS--LEVWGGATFDVCIRYLNEDPWERLRKLKKALPNTPLQMLLRGQNLVGYRHYPDDVVEKFVEK 104 (592)
T ss_pred HHHHHHHHHHHcCCCE--EEecCCccchhhcccCCccHHHHHHHHHHhCCCCEEEEEeccccccccccccchhhHHHHHH
Confidence 3344555677778887 677544 33322333 2 3557777777788887766554432 234777
Q ss_pred HHhcCCCeEE
Q psy11600 83 MADANVDQYT 92 (277)
Q Consensus 83 l~~ag~d~i~ 92 (277)
..++|+|++.
T Consensus 105 A~~~Gvd~ir 114 (592)
T PRK09282 105 AAENGIDIFR 114 (592)
T ss_pred HHHCCCCEEE
Confidence 7888999884
No 289
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=88.20 E-value=17 Score=32.92 Aligned_cols=74 Identities=16% Similarity=0.138 Sum_probs=44.0
Q ss_pred cccHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcC----CCeEE
Q psy11600 17 LSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADAN----VDQYT 92 (277)
Q Consensus 17 ~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag----~d~i~ 92 (277)
.....+-++.|.+.|++. +.+ |.|+-+=. ..+.++.+++..++..+.+.. .--.+.++...++| ++++.
T Consensus 19 ~~~k~~i~~~L~~~Gv~~--iEv--g~~~~~~~-~~~~~~~l~~~~~~~~~~~l~--r~~~~~v~~a~~~~~~~~~~~i~ 91 (268)
T cd07940 19 PEEKLEIARQLDELGVDV--IEA--GFPAASPG-DFEAVKRIAREVLNAEICGLA--RAVKKDIDAAAEALKPAKVDRIH 91 (268)
T ss_pred HHHHHHHHHHHHHcCCCE--EEE--eCCCCCHH-HHHHHHHHHHhCCCCEEEEEc--cCCHhhHHHHHHhCCCCCCCEEE
Confidence 334455677788888777 444 54541000 126778888755676665544 22245577788888 99986
Q ss_pred EeccC
Q psy11600 93 FHVEP 97 (277)
Q Consensus 93 ~H~e~ 97 (277)
+-.-+
T Consensus 92 i~~~~ 96 (268)
T cd07940 92 TFIAT 96 (268)
T ss_pred EEecC
Confidence 65433
No 290
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=88.07 E-value=4.9 Score=38.91 Aligned_cols=81 Identities=9% Similarity=0.110 Sum_probs=55.0
Q ss_pred eEeeecccc-CcccHHHHHHHHHHcCCCEEEEeccccccccC-CC---C------C----HHHHHHHHhcCCCCeeeeee
Q psy11600 7 MIGPSILNS-DLSNLHSESQNLLDSGADYLHLDVMDGTFVPN-LT---F------G----HPVVKCLRNKIPKAFFETHM 71 (277)
Q Consensus 7 ~~~~s~~~~-d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~-~~---~------g----~~~v~~l~~~~~~~~~d~Hl 71 (277)
.+.+||... +...+.+..+.+++.|+|+ +|+ .-..|| .. + - -++++.+|+. +++|+.+=|
T Consensus 101 p~i~si~g~~~~~~~~~~a~~~~~~g~d~--iel--N~scP~~~~~~~~g~~~~~~~~~~~~i~~~v~~~-~~~Pv~vKl 175 (420)
T PRK08318 101 ALIASIMVECNEEEWKEIAPLVEETGADG--IEL--NFGCPHGMSERGMGSAVGQVPELVEMYTRWVKRG-SRLPVIVKL 175 (420)
T ss_pred eEEEEeccCCCHHHHHHHHHHHHhcCCCE--EEE--eCCCCCCccccCCcccccCCHHHHHHHHHHHHhc-cCCcEEEEc
Confidence 367899887 7888888899999888887 333 223455 11 1 1 2457777764 677877766
Q ss_pred ec--cCcHHhHHHHHhcCCCeEE
Q psy11600 72 MV--QNPQQWIEPMADANVDQYT 92 (277)
Q Consensus 72 mv--~~p~~~i~~l~~ag~d~i~ 92 (277)
=- .+..+..+.+.++|+|.++
T Consensus 176 ~p~~~~~~~~a~~~~~~Gadgi~ 198 (420)
T PRK08318 176 TPNITDIREPARAAKRGGADAVS 198 (420)
T ss_pred CCCcccHHHHHHHHHHCCCCEEE
Confidence 42 2344567778899999998
No 291
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=88.03 E-value=13 Score=33.90 Aligned_cols=163 Identities=13% Similarity=0.148 Sum_probs=97.9
Q ss_pred EeeeccccCcccHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCc-----HHhHHH
Q psy11600 8 IGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNP-----QQWIEP 82 (277)
Q Consensus 8 ~~~s~~~~d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p-----~~~i~~ 82 (277)
+.|.-=..+..++-+.++.|.+.+.|+ +.|-||.--..-.-...+.+.|++. ..++.-+|+-..+- ..++..
T Consensus 5 ~~PP~~~~~~~~l~~~~~~l~~~~pd~--isvT~~~~~~~~~~t~~~a~~l~~~-~g~~~i~Hlt~r~~n~~~l~~~L~~ 81 (272)
T TIGR00676 5 FFPPKTDEGEENLWETVDRLSPLDPDF--VSVTYGAGGSTRDRTVRIVRRIKKE-TGIPTVPHLTCIGATREEIREILRE 81 (272)
T ss_pred EECcCCchhHHHHHHHHHHHhcCCCCE--EEeccCCCCCcHHHHHHHHHHHHHh-cCCCeeEEeeecCCCHHHHHHHHHH
Confidence 444444344578888999999999999 8998876643222234556777754 58899999998873 345677
Q ss_pred HHhcCCCeEE-EeccCC-----------CCCHHHHHHHHhhCC-Ccccc---hh------------hhhHHHHhcCCCeE
Q psy11600 83 MADANVDQYT-FHVEPV-----------DNVPQVIRQIKEAGM-KVGQV---LQ------------DWIEPMADANVDQY 134 (277)
Q Consensus 83 l~~ag~d~i~-~H~e~~-----------d~g~~~i~~i~~~~~-~~~d~---p~------------~~i~~~~~~g~d~i 134 (277)
+.++|++.+- +=-|.. +...++|+.+++... ..+-+ |+ ++++.=.++||+++
T Consensus 82 ~~~~Gi~nvL~l~GD~~~~~~~~~~~~f~~a~~Li~~i~~~~~~f~ig~a~~Peghp~~~~~~~~~~~L~~K~~aGA~f~ 161 (272)
T TIGR00676 82 YRELGIRHILALRGDPPKGEGTPTPGGFNYASELVEFIRNEFGDFDIGVAAYPEKHPEAPNLEEDIENLKRKVDAGADYA 161 (272)
T ss_pred HHHCCCCEEEEeCCCCCCCCCCCCCCCCCCHHHHHHHHHHhcCCeeEEEEeCCCCCCCCCCHHHHHHHHHHHHHcCCCeE
Confidence 7888988663 112221 226678888887632 21110 22 34555568999866
Q ss_pred Eee----cCCCCChHHHHHHHHHhC--CccceeeCCCCCHHhHHHHHh
Q psy11600 135 TFH----VEPVDNVPQVIRQIKEAG--MKVGLAIKPKTPVDVIAEYIE 176 (277)
Q Consensus 135 t~H----~E~~~~~~~~~~~I~~~g--~~~g~~i~p~t~~~~i~~~i~ 176 (277)
.=+ .+ ...+..+.+++.| ...=.|+.|-++...+..+..
T Consensus 162 iTQ~~fd~~---~~~~~~~~~~~~gi~~PIi~Gi~p~~s~k~~~~~~~ 206 (272)
T TIGR00676 162 ITQLFFDND---DYYRFVDRCRAAGIDVPIIPGIMPITNFKQLLRFAE 206 (272)
T ss_pred eeccccCHH---HHHHHHHHHHHcCCCCCEecccCCcCCHHHHHHHHh
Confidence 533 33 3344555555554 233455556666554444443
No 292
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=88.01 E-value=8.9 Score=35.49 Aligned_cols=69 Identities=17% Similarity=0.109 Sum_probs=49.2
Q ss_pred HHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEEeccCCCC
Q psy11600 21 HSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTFHVEPVDN 100 (277)
Q Consensus 21 ~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~H~e~~d~ 100 (277)
-.|.+.|++.|+|++ | .+-++. --.+++..+|++| +.||-+. +.|+++-++. .+.|+|+|.=..+.-++
T Consensus 79 ~~Ea~~L~~~GvDiI--D---eTe~lr--Pade~~~~~K~~f-~vpfmad--~~~l~EAlra-i~~GadmI~Tt~e~gTg 147 (287)
T TIGR00343 79 FVEAQILEALGVDYI--D---ESEVLT--PADWTFHIDKKKF-KVPFVCG--ARDLGEALRR-INEGAAMIRTKGEAGTG 147 (287)
T ss_pred HHHHHHHHHcCCCEE--E---ccCCCC--cHHHHHHHHHHHc-CCCEEcc--CCCHHHHHHH-HHCCCCEEeccccCCCc
Confidence 578899999999994 4 555532 2468888888876 7777665 3577777765 46799999766665444
No 293
>PRK02412 aroD 3-dehydroquinate dehydratase; Provisional
Probab=87.89 E-value=5.8 Score=35.84 Aligned_cols=129 Identities=16% Similarity=0.206 Sum_probs=75.2
Q ss_pred ceEeeeccccCcccHHHHHHHHHHcCCCEE--EEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccC--------
Q psy11600 6 CMIGPSILNSDLSNLHSESQNLLDSGADYL--HLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQN-------- 75 (277)
Q Consensus 6 ~~~~~s~~~~d~~~l~~~~~~l~~~~~~~~--h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~-------- 75 (277)
.+|..++...+...+-++.+.+.+.|+|.+ =+|..+. + ++...-...++++++.++++|+-+++-...
T Consensus 16 ~~i~v~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~-~-~~~~~~~~~~~~l~~~~~~~PiI~T~R~~~eGG~~~~~ 93 (253)
T PRK02412 16 PKIIVPIMGKTLEEVLAEALAISKYDADIIEWRADFLEK-I-SDVESVLAAAPAIREKFAGKPLLFTFRTAKEGGEIALS 93 (253)
T ss_pred cEEEEEeCCCCHHHHHHHHHHHhhcCCCEEEEEechhhc-c-CCHHHHHHHHHHHHHhcCCCcEEEEECChhhCCCCCCC
Confidence 478889998888888888888777777763 3455542 1 122222346677777667889998887553
Q ss_pred cHHh---HHHHHhcC-CCeEEEeccCCCC---CHHHHHHHHhhCCC----cccc---h-----hhhhHHHHhcCCCeEEe
Q psy11600 76 PQQW---IEPMADAN-VDQYTFHVEPVDN---VPQVIRQIKEAGMK----VGQV---L-----QDWIEPMADANVDQYTF 136 (277)
Q Consensus 76 p~~~---i~~l~~ag-~d~i~~H~e~~d~---g~~~i~~i~~~~~~----~~d~---p-----~~~i~~~~~~g~d~it~ 136 (277)
.+++ ++.+.+.| +|++ .+|.... -.++++.+++.+.. .|+. | ..+++.+.+.|||.+=+
T Consensus 94 ~~~~~~ll~~~~~~~~~d~v--DiEl~~~~~~~~~l~~~~~~~~~kvI~S~H~f~~tP~~~~l~~~~~~~~~~gaDivKi 171 (253)
T PRK02412 94 DEEYLALIKAVIKSGLPDYI--DVELFSGKDVVKEMVAFAHEHGVKVVLSYHDFEKTPPKEEIVERLRKMESLGADIVKI 171 (253)
T ss_pred HHHHHHHHHHHHhcCCCCEE--EEeccCChHHHHHHHHHHHHcCCEEEEeeCCCCCCcCHHHHHHHHHHHHHhCCCEEEE
Confidence 2333 44455667 8999 6664221 22233344433322 2332 4 23455666667775544
Q ss_pred ec
Q psy11600 137 HV 138 (277)
Q Consensus 137 H~ 138 (277)
=.
T Consensus 172 a~ 173 (253)
T PRK02412 172 AV 173 (253)
T ss_pred Ee
Confidence 33
No 294
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=87.85 E-value=6.6 Score=35.76 Aligned_cols=191 Identities=13% Similarity=0.156 Sum_probs=110.7
Q ss_pred HHHHHHHHhcCCCCe-eeeeeeccCcHHhHHHHHhcCCCeEEEeccCC--CCCHHHHHHHHhhCCCcccc-----hhhhh
Q psy11600 52 HPVVKCLRNKIPKAF-FETHMMVQNPQQWIEPMADANVDQYTFHVEPV--DNVPQVIRQIKEAGMKVGQV-----LQDWI 123 (277)
Q Consensus 52 ~~~v~~l~~~~~~~~-~d~Hlmv~~p~~~i~~l~~ag~d~i~~H~e~~--d~g~~~i~~i~~~~~~~~d~-----p~~~i 123 (277)
+.+|.++|+.-|..- +..| .+|.++.+.+.++||..+++--|.. .|.++.++.+|.....|+.+ -...|
T Consensus 46 ~~vIAEvKkaSPS~G~ir~d---~dp~~ia~~Ye~~GAa~iSVLTd~~~F~Gs~e~L~~v~~~v~~PvL~KDFiiD~yQI 122 (254)
T COG0134 46 PAVIAEVKKASPSKGLIRED---FDPVEIAKAYEEGGAAAISVLTDPKYFQGSFEDLRAVRAAVDLPVLRKDFIIDPYQI 122 (254)
T ss_pred ceEEEEeecCCCCCCccccc---CCHHHHHHHHHHhCCeEEEEecCccccCCCHHHHHHHHHhcCCCeeeccCCCCHHHH
Confidence 344555555545432 2222 3788899999999999999988874 67999999999999988865 24456
Q ss_pred HHHHhcCCCeEEeecCCCC--ChHHHHHHHHHhCCccceeeCCCCCHHhHHHHHhhcCceEEEEecCCCCCchhhhhhhh
Q psy11600 124 EPMADANVDQYTFHVEPVD--NVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIMTVEPGFGGQKFMQDMMP 201 (277)
Q Consensus 124 ~~~~~~g~d~it~H~E~~~--~~~~~~~~I~~~g~~~g~~i~p~t~~~~i~~~i~~~d~vl~mav~Pgt~gq~~~~~~l~ 201 (277)
..-..+|||.|-+-+..-+ ....+.+..+..||.+=+-+. ..+++...++ .+..+ +.+|-- ....| +--++
T Consensus 123 ~~Ar~~GADavLLI~~~L~~~~l~el~~~A~~LGm~~LVEVh---~~eEl~rAl~-~ga~i-IGINnR-dL~tf-~vdl~ 195 (254)
T COG0134 123 YEARAAGADAVLLIVAALDDEQLEELVDRAHELGMEVLVEVH---NEEELERALK-LGAKI-IGINNR-DLTTL-EVDLE 195 (254)
T ss_pred HHHHHcCcccHHHHHHhcCHHHHHHHHHHHHHcCCeeEEEEC---CHHHHHHHHh-CCCCE-EEEeCC-Ccchh-eecHH
Confidence 6667889998776554000 122344444444433211111 1234444444 33332 444531 11111 11233
Q ss_pred hHHHHHhhCCC-ccEEEeCCCC-cCcHHHHHHccCCC---CCcccc-cCHHHHHHHH
Q psy11600 202 KVKWLRENYPT-LNIEVDGGVG-PNTIDECAKCLTGF---GGQKFM-QDMMPKVKWL 252 (277)
Q Consensus 202 kI~~l~~~~~~-~~i~vdGgV~-~~tv~~~~~~gpg~---ggq~F~-~~~~~kI~~l 252 (277)
.-..+.+..|. .-++.-.||. ...+..+.+.|++. |.+.+. ++..+.++++
T Consensus 196 ~t~~la~~~p~~~~~IsESGI~~~~dv~~l~~~ga~a~LVG~slM~~~~~~~a~~~l 252 (254)
T COG0134 196 TTEKLAPLIPKDVILISESGISTPEDVRRLAKAGADAFLVGEALMRADDPEEALREL 252 (254)
T ss_pred HHHHHHhhCCCCcEEEecCCCCCHHHHHHHHHcCCCEEEecHHHhcCCCHHHHHHHh
Confidence 34455566664 5566677776 67777788888873 666665 3555555554
No 295
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=87.76 E-value=20 Score=32.56 Aligned_cols=150 Identities=15% Similarity=0.097 Sum_probs=0.0
Q ss_pred HhHHHHHhcCCCeEEEeccCCCC-----CHHHHHHHHhhCCCcccc---hhhhhHHHHhc--CCCeE-EeecCCCCC--h
Q psy11600 78 QWIEPMADANVDQYTFHVEPVDN-----VPQVIRQIKEAGMKVGQV---LQDWIEPMADA--NVDQY-TFHVEPVDN--V 144 (277)
Q Consensus 78 ~~i~~l~~ag~d~i~~H~e~~d~-----g~~~i~~i~~~~~~~~d~---p~~~i~~~~~~--g~d~i-t~H~E~~~~--~ 144 (277)
+....+.++|||+|=+=.++... -.++|+.+++.+..|+.+ -...++.-.++ |+++| ++-.| . .
T Consensus 29 ~~A~~~~~~GAdiIDVg~~~~~~eE~~r~~~~v~~l~~~~~~plsIDT~~~~v~eaaL~~~~G~~iINsIs~~---~~~~ 105 (261)
T PRK07535 29 KLALKQAEAGADYLDVNAGTAVEEEPETMEWLVETVQEVVDVPLCIDSPNPAAIEAGLKVAKGPPLINSVSAE---GEKL 105 (261)
T ss_pred HHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHHHHhCCCCEEEeCCCHHHHHHHHHhCCCCCEEEeCCCC---CccC
Q ss_pred HHHHHHHHHhCCccceeeC--CCCCHHhHHHHHhhcCceEEEEecCCCCCchhhhhhhhhHHHHHhh-CCCccEEEeCCC
Q psy11600 145 PQVIRQIKEAGMKVGLAIK--PKTPVDVIAEYIESADLVLIMTVEPGFGGQKFMQDMMPKVKWLREN-YPTLNIEVDGGV 221 (277)
Q Consensus 145 ~~~~~~I~~~g~~~g~~i~--p~t~~~~i~~~i~~~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~-~~~~~i~vdGgV 221 (277)
+...+.+++.|...-+-.. .| .|.|. |..++.+.+.++.+.+. .+.-+|.+|.|+
T Consensus 106 ~~~~~l~~~~g~~vv~m~~~~~g---------------------~P~t~-~~~~~~l~~~v~~a~~~GI~~~~IilDPgi 163 (261)
T PRK07535 106 EVVLPLVKKYNAPVVALTMDDTG---------------------IPKDA-EDRLAVAKELVEKADEYGIPPEDIYIDPLV 163 (261)
T ss_pred HHHHHHHHHhCCCEEEEecCCCC---------------------CCCCH-HHHHHHHHHHHHHHHHcCCCHhHEEEeCCC
Q ss_pred CcCcHHHHHHccCCCCCcccccCHHHHHHHHHhhCCCCeEEE
Q psy11600 222 GPNTIDECAKCLTGFGGQKFMQDMMPKVKWLRENYPTLNIEV 263 (277)
Q Consensus 222 ~~~tv~~~~~~gpg~ggq~F~~~~~~kI~~l~~~~~~~~I~V 263 (277)
||-..++.-.-.+++.++++++.+|.+.+-+
T Consensus 164 -----------~~~~~~~~~~~~~l~~i~~l~~~~pg~p~l~ 194 (261)
T PRK07535 164 -----------LPLSAAQDAGPEVLETIRRIKELYPKVHTTC 194 (261)
T ss_pred -----------CcccCChHHHHHHHHHHHHHHHhCCCCCEEE
No 296
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=87.75 E-value=6.1 Score=36.68 Aligned_cols=126 Identities=14% Similarity=0.106 Sum_probs=88.3
Q ss_pred eeccccCcccHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeee--e-----------eec-cC
Q psy11600 10 PSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFET--H-----------MMV-QN 75 (277)
Q Consensus 10 ~s~~~~d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~--H-----------lmv-~~ 75 (277)
|=.+..|-.+++ .+++..+.|.+++.+|--+-+|-.|+...-++++.-++. ++++.. . .-. .+
T Consensus 79 PV~lHLDH~~~~-~i~~ai~~GftSVm~d~S~l~~eEni~~t~~v~~~a~~~--gv~vE~ElG~i~g~ed~~~g~s~~t~ 155 (293)
T PRK07315 79 PVAIHLDHGHYE-DALECIEVGYTSIMFDGSHLPVEENLKLAKEVVEKAHAK--GISVEAEVGTIGGEEDGIIGKGELAP 155 (293)
T ss_pred cEEEECCCCCHH-HHHHHHHcCCCEEEEcCCCCCHHHHHHHHHHHHHHHHHc--CCEEEEecCcccCcCccccCccCCCC
Confidence 555677877544 667777889999999998888887877766666554432 332221 1 112 46
Q ss_pred cHHhHHHHHhcCCCeEEEeccCC---------CCCHHHHHHHHhhCC-Cccc------chhhhhHHHHhcCCCeEEeecC
Q psy11600 76 PQQWIEPMADANVDQYTFHVEPV---------DNVPQVIRQIKEAGM-KVGQ------VLQDWIEPMADANVDQYTFHVE 139 (277)
Q Consensus 76 p~~~i~~l~~ag~d~i~~H~e~~---------d~g~~~i~~i~~~~~-~~~d------~p~~~i~~~~~~g~d~it~H~E 139 (277)
|++-.+ +.+.|+|++.+=+-.. .-+.+.++.+++... .|+- +|.+-+...+++|+..|.+..+
T Consensus 156 peea~~-f~~tgvD~LAv~iG~vHG~y~t~~k~l~~e~L~~i~~~~~~iPlVlhGGSGi~~e~~~~~i~~Gi~KiNv~T~ 234 (293)
T PRK07315 156 IEDAKA-MVETGIDFLAAGIGNIHGPYPENWEGLDLDHLEKLTEAVPGFPIVLHGGSGIPDDQIQEAIKLGVAKVNVNTE 234 (293)
T ss_pred HHHHHH-HHHcCCCEEeeccccccccCCCCCCcCCHHHHHHHHHhccCCCEEEECCCCCCHHHHHHHHHcCCCEEEEccH
Confidence 766544 5588999996653222 138899999999884 6653 3889999999999999999876
No 297
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=87.71 E-value=12 Score=33.25 Aligned_cols=119 Identities=13% Similarity=0.208 Sum_probs=69.0
Q ss_pred eeccccCcccHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCC--CCeeeeeeec--------------
Q psy11600 10 PSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIP--KAFFETHMMV-------------- 73 (277)
Q Consensus 10 ~s~~~~d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~--~~~~d~Hlmv-------------- 73 (277)
|=+.+....+.++. +.+.+.|++. +.+- ..+. -+|++++++.+.+. ++.+.+..+.
T Consensus 73 pv~~~GGI~s~~d~-~~~l~~G~~~--v~ig-~~~~----~~p~~~~~i~~~~~~~~i~~~ld~k~~~~~~~~v~~~~~~ 144 (243)
T cd04731 73 PLTVGGGIRSLEDA-RRLLRAGADK--VSIN-SAAV----ENPELIREIAKRFGSQCVVVSIDAKRRGDGGYEVYTHGGR 144 (243)
T ss_pred CEEEeCCCCCHHHH-HHHHHcCCce--EEEC-chhh----hChHHHHHHHHHcCCCCEEEEEEeeecCCCceEEEEcCCc
Confidence 44555666666544 4555578888 4332 2222 26788888877665 2555555441
Q ss_pred ----cCcHHhHHHHHhcCCCeEEEeccCCCC-----CHHHHHHHHhhCCCcccc------hhhhhHHHHhcCCCeEEe
Q psy11600 74 ----QNPQQWIEPMADANVDQYTFHVEPVDN-----VPQVIRQIKEAGMKVGQV------LQDWIEPMADANVDQYTF 136 (277)
Q Consensus 74 ----~~p~~~i~~l~~ag~d~i~~H~e~~d~-----g~~~i~~i~~~~~~~~d~------p~~~i~~~~~~g~d~it~ 136 (277)
.+..+.++.+.+.|++.+.+|--..++ ...+++.+++....|+-. |++..+.+...|+|.+.+
T Consensus 145 ~~~~~~~~~~~~~l~~~G~d~i~v~~i~~~g~~~g~~~~~i~~i~~~~~~pvia~GGi~~~~di~~~l~~~g~dgv~v 222 (243)
T cd04731 145 KPTGLDAVEWAKEVEELGAGEILLTSMDRDGTKKGYDLELIRAVSSAVNIPVIASGGAGKPEHFVEAFEEGGADAALA 222 (243)
T ss_pred eecCCCHHHHHHHHHHCCCCEEEEeccCCCCCCCCCCHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHhCCCCEEEE
Confidence 234566788899999999998532222 356677777766555432 444333333346665554
No 298
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=87.58 E-value=4.2 Score=40.63 Aligned_cols=109 Identities=12% Similarity=0.112 Sum_probs=65.9
Q ss_pred HHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEE--eccC-
Q psy11600 21 HSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTF--HVEP- 97 (277)
Q Consensus 21 ~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~--H~e~- 97 (277)
.+-++.|.++|+|.+=+|.-+|+-. .-.+.++++|+.+|+.++-+- -|..++ ....+.++|+|.|.+ |.-.
T Consensus 250 ~~r~~~l~~ag~d~i~iD~~~g~~~----~~~~~i~~ik~~~p~~~vi~g-~v~t~e-~a~~a~~aGaD~i~vg~g~G~~ 323 (505)
T PLN02274 250 KERLEHLVKAGVDVVVLDSSQGDSI----YQLEMIKYIKKTYPELDVIGG-NVVTMY-QAQNLIQAGVDGLRVGMGSGSI 323 (505)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCcH----HHHHHHHHHHHhCCCCcEEEe-cCCCHH-HHHHHHHcCcCEEEECCCCCcc
Confidence 4677788889999999999877643 223679999998877543210 133344 466778899999843 3210
Q ss_pred --C-----CCCH-----HHHHHHHhhCCCcccc------hhhhhHHHHhcCCCeEEe
Q psy11600 98 --V-----DNVP-----QVIRQIKEAGMKVGQV------LQDWIEPMADANVDQYTF 136 (277)
Q Consensus 98 --~-----d~g~-----~~i~~i~~~~~~~~d~------p~~~i~~~~~~g~d~it~ 136 (277)
. -|.| ..+.++.+....|+-+ |.+.++.|+ +||+.+-+
T Consensus 324 ~~t~~~~~~g~~~~~~i~~~~~~~~~~~vpVIadGGI~~~~di~kAla-~GA~~V~v 379 (505)
T PLN02274 324 CTTQEVCAVGRGQATAVYKVASIAAQHGVPVIADGGISNSGHIVKALT-LGASTVMM 379 (505)
T ss_pred ccCccccccCCCcccHHHHHHHHHHhcCCeEEEeCCCCCHHHHHHHHH-cCCCEEEE
Confidence 0 0111 1244444433344322 666666665 68886655
No 299
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=87.44 E-value=4 Score=37.97 Aligned_cols=79 Identities=14% Similarity=0.128 Sum_probs=54.9
Q ss_pred HHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEEeccCCCCCHHHHHHHHhhCC-C-cccc----hhhhhHH
Q psy11600 52 HPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGM-K-VGQV----LQDWIEP 125 (277)
Q Consensus 52 ~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~H~e~~d~g~~~i~~i~~~~~-~-~~d~----p~~~i~~ 125 (277)
.+.++.+|+..|..+ +-+-+.+++ ++....++|+|.| .+|-|+ |+.++++-+... . .+.+ ..+-+..
T Consensus 196 ~~av~~~r~~~~~~k--IeVEv~sle-ea~ea~~~gaDiI--~LDn~s--~e~~~~av~~~~~~~~ieaSGGI~~~ni~~ 268 (296)
T PRK09016 196 RQAVEKAFWLHPDVP--VEVEVENLD-ELDQALKAGADII--MLDNFT--TEQMREAVKRTNGRALLEVSGNVTLETLRE 268 (296)
T ss_pred HHHHHHHHHhCCCCC--EEEEeCCHH-HHHHHHHcCCCEE--EeCCCC--hHHHHHHHHhhcCCeEEEEECCCCHHHHHH
Confidence 367888887767655 455666754 5556778999999 777665 555555544322 2 3333 6889999
Q ss_pred HHhcCCCeEEee
Q psy11600 126 MADANVDQYTFH 137 (277)
Q Consensus 126 ~~~~g~d~it~H 137 (277)
+++.|+|+|+.-
T Consensus 269 yA~tGVD~Is~g 280 (296)
T PRK09016 269 FAETGVDFISVG 280 (296)
T ss_pred HHhcCCCEEEeC
Confidence 999999999974
No 300
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=87.38 E-value=4.8 Score=39.95 Aligned_cols=109 Identities=17% Similarity=0.167 Sum_probs=69.1
Q ss_pred cHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcH--HhHHHHHhcCCCeEEEecc
Q psy11600 19 NLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQ--QWIEPMADANVDQYTFHVE 96 (277)
Q Consensus 19 ~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~--~~i~~l~~ag~d~i~~H~e 96 (277)
+..+.++.|.+.|+|.+=+|.-.|+-. .-.++++++|++||+.+ +|..|-. +..+.+.++|+|.+-+=+-
T Consensus 227 ~~~~~a~~Lv~aGvd~i~~D~a~~~~~----~~~~~i~~ik~~~p~~~----v~agnv~t~~~a~~l~~aGad~v~vgig 298 (479)
T PRK07807 227 DVAAKARALLEAGVDVLVVDTAHGHQE----KMLEALRAVRALDPGVP----IVAGNVVTAEGTRDLVEAGADIVKVGVG 298 (479)
T ss_pred hHHHHHHHHHHhCCCEEEEeccCCccH----HHHHHHHHHHHHCCCCe----EEeeccCCHHHHHHHHHcCCCEEEECcc
Confidence 455778888899999999999999821 33478999999888754 4554432 3466778899999853333
Q ss_pred C----CC----C-CHHHHHHHHhhC------CCcccc------hhhhhHHHHhcCCCeEEe
Q psy11600 97 P----VD----N-VPQVIRQIKEAG------MKVGQV------LQDWIEPMADANVDQYTF 136 (277)
Q Consensus 97 ~----~d----~-g~~~i~~i~~~~------~~~~d~------p~~~i~~~~~~g~d~it~ 136 (277)
+ .. + |...+.++.+.. ..|+-+ |.+..+.++ +||+.+-+
T Consensus 299 ~gsictt~~~~~~~~p~~~av~~~~~~~~~~~~~via~ggi~~~~~~~~al~-~ga~~v~~ 358 (479)
T PRK07807 299 PGAMCTTRMMTGVGRPQFSAVLECAAAARELGAHVWADGGVRHPRDVALALA-AGASNVMI 358 (479)
T ss_pred CCcccccccccCCchhHHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHH-cCCCeeec
Confidence 2 11 1 333444443322 122211 777777776 68876654
No 301
>PF04476 DUF556: Protein of unknown function (DUF556); InterPro: IPR007565 The proteins in this entry are functionally uncharacterised.
Probab=87.19 E-value=22 Score=31.99 Aligned_cols=182 Identities=18% Similarity=0.175 Sum_probs=0.0
Q ss_pred HHHHHHHHcCCCEEEEeccc---cccccCCCCCHHHHHHHHhcCC-CCeeeeee-----eccCcHHhHHHHHhcCCCeEE
Q psy11600 22 SESQNLLDSGADYLHLDVMD---GTFVPNLTFGHPVVKCLRNKIP-KAFFETHM-----MVQNPQQWIEPMADANVDQYT 92 (277)
Q Consensus 22 ~~~~~l~~~~~~~~h~DimD---g~fvp~~~~g~~~v~~l~~~~~-~~~~d~Hl-----mv~~p~~~i~~l~~ag~d~i~ 92 (277)
+|-....+.|+|. +|+=| |..- ...+++|++++...+ +.|+++=+ .-.............|+||+-
T Consensus 11 ~EA~~a~~~gaDi--ID~K~P~~GaLG---A~~~~vi~~i~~~~~~~~pvSAtiGDlp~~p~~~~~aa~~~a~~GvdyvK 85 (235)
T PF04476_consen 11 EEAEEALAGGADI--IDLKNPAEGALG---ALFPWVIREIVAAVPGRKPVSATIGDLPMKPGTASLAALGAAATGVDYVK 85 (235)
T ss_pred HHHHHHHhCCCCE--EEccCCCCCCCC---CCCHHHHHHHHHHcCCCCceEEEecCCCCCchHHHHHHHHHHhcCCCEEE
Q ss_pred EeccCCCCCHHHHHHHHhhCCCcccc---------------------hhhhhHHHHhcCCCeEEeecCCCCChHHHHHHH
Q psy11600 93 FHVEPVDNVPQVIRQIKEAGMKVGQV---------------------LQDWIEPMADANVDQYTFHVEPVDNVPQVIRQI 151 (277)
Q Consensus 93 ~H~e~~d~g~~~i~~i~~~~~~~~d~---------------------p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I 151 (277)
+=+-......+.++.++......-+. |..+.+..+++|++.+-+ ++..
T Consensus 86 vGl~g~~~~~~a~e~l~~v~~av~~~~~~~~vVAv~yAD~~r~~~~~p~~l~~~a~~aG~~gvMl------DTa~----- 154 (235)
T PF04476_consen 86 VGLFGCKDYDEAIEALEAVVRAVKDFDPDKKVVAVGYADAQRVGSISPLDLPEIAAEAGFDGVML------DTAD----- 154 (235)
T ss_pred EecCCCCCHHHHHHHHHHHHHHHhhhCCCcEEEEEEecchhhhcCCCHHHHHHHHHHcCCCEEEE------eccc-----
Q ss_pred HHhCCccceeeCCCCCHHhHHHHHhhcCceEEEEecCCCCCchhhhhhhhhHHHHHhhCCCccEEEeCCCCcCcHHHHHH
Q psy11600 152 KEAGMKVGLAIKPKTPVDVIAEYIESADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAK 231 (277)
Q Consensus 152 ~~~g~~~g~~i~p~t~~~~i~~~i~~~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~~~~~i~vdGgV~~~tv~~~~~ 231 (277)
|-|-.+---.+.+.+..+ ++..+. .++...+.|+++..-++.+..
T Consensus 155 -----Kdg~~L~d~~~~~~L~~F----------------------------v~~ar~--~gL~~aLAGSL~~~di~~L~~ 199 (235)
T PF04476_consen 155 -----KDGGSLFDHLSEEELAEF----------------------------VAQARA--HGLMCALAGSLRFEDIPRLKR 199 (235)
T ss_pred -----CCCCchhhcCCHHHHHHH----------------------------HHHHHH--ccchhhccccCChhHHHHHHh
Q ss_pred ccCCC---------CCcccc-cCHHHHHHHHHh
Q psy11600 232 CLTGF---------GGQKFM-QDMMPKVKWLRE 254 (277)
Q Consensus 232 ~gpg~---------ggq~F~-~~~~~kI~~l~~ 254 (277)
.+|+| ||+.-. .--.++|+++|+
T Consensus 200 l~pD~lGfRGAvC~ggdR~~G~id~~~V~~lr~ 232 (235)
T PF04476_consen 200 LGPDILGFRGAVCGGGDRRAGRIDPELVAALRA 232 (235)
T ss_pred cCCCEEEechhhCCCCCcCccccCHHHHHHHHH
No 302
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=87.16 E-value=9.6 Score=35.37 Aligned_cols=69 Identities=16% Similarity=0.063 Sum_probs=47.9
Q ss_pred HHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEEeccCCCC
Q psy11600 21 HSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTFHVEPVDN 100 (277)
Q Consensus 21 ~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~H~e~~d~ 100 (277)
-.|.+.|++.|+|++ | .+-++. --.+++..+|+.| +.+|-+. +.++++.+.. .+.|+|+|.-.-|+.+|
T Consensus 86 ~~Ea~~L~~~GvDiI--D---~Te~lr--pad~~~~~~K~~f-~~~fmad--~~~l~EAlra-i~~GadmI~Ttge~gtg 154 (293)
T PRK04180 86 FVEAQILEALGVDYI--D---ESEVLT--PADEEYHIDKWDF-TVPFVCG--ARNLGEALRR-IAEGAAMIRTKGEAGTG 154 (293)
T ss_pred HHHHHHHHHcCCCEE--e---ccCCCC--chHHHHHHHHHHc-CCCEEcc--CCCHHHHHHH-HHCCCCeeeccCCCCCc
Confidence 478889999999994 5 455432 2447888888876 6666554 3467776765 55799999767666555
No 303
>PRK12928 lipoyl synthase; Provisional
Probab=86.98 E-value=2.6 Score=39.06 Aligned_cols=92 Identities=13% Similarity=0.255 Sum_probs=57.8
Q ss_pred ccCcccHHHHHHHHHHcCCCEEEEeccccccccCCC--CCHHHHHHHHhcCCCCeeeeeeeccCc----HHhHHHHHhcC
Q psy11600 14 NSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLT--FGHPVVKCLRNKIPKAFFETHMMVQNP----QQWIEPMADAN 87 (277)
Q Consensus 14 ~~d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~--~g~~~v~~l~~~~~~~~~d~Hlmv~~p----~~~i~~l~~ag 87 (277)
+.+.....+.++.+.+.|++.+|+-=.+..-.|+.. .=.++++.+++..|.. -++..+.++ .+.+..+.++|
T Consensus 86 ~~~~eei~~~a~~~~~~G~keivitg~~~dDl~d~g~~~~~ell~~Ik~~~p~~--~I~~ltp~~~~~~~e~L~~l~~Ag 163 (290)
T PRK12928 86 PLDPDEPERVAEAVAALGLRYVVLTSVARDDLPDGGAAHFVATIAAIRARNPGT--GIEVLTPDFWGGQRERLATVLAAK 163 (290)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEEEEeCCcccccCHHHHHHHHHHHHhcCCCC--EEEEeccccccCCHHHHHHHHHcC
Confidence 356777788888888999999888221100012211 1257888998865654 445555554 34688899999
Q ss_pred CCeEEEeccCCCCCHHHHHHHHh
Q psy11600 88 VDQYTFHVEPVDNVPQVIRQIKE 110 (277)
Q Consensus 88 ~d~i~~H~e~~d~g~~~i~~i~~ 110 (277)
++.+..-+| .++.+.+.+++
T Consensus 164 ~~i~~hnlE---t~~~vl~~m~r 183 (290)
T PRK12928 164 PDVFNHNLE---TVPRLQKAVRR 183 (290)
T ss_pred chhhcccCc---CcHHHHHHhCC
Confidence 998753333 24666666654
No 304
>KOG2263|consensus
Probab=86.78 E-value=7.4 Score=38.69 Aligned_cols=128 Identities=20% Similarity=0.279 Sum_probs=73.2
Q ss_pred cHHHHHHHHHHcCCCEEEEeccccccccCCCCC------------HHHHHHHHhcCC----CCeeeeeeeccCcHHhHHH
Q psy11600 19 NLHSESQNLLDSGADYLHLDVMDGTFVPNLTFG------------HPVVKCLRNKIP----KAFFETHMMVQNPQQWIEP 82 (277)
Q Consensus 19 ~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g------------~~~v~~l~~~~~----~~~~d~Hlmv~~p~~~i~~ 82 (277)
.+.+|++.|+++|+..+++|=-- +.-| .+.+.++|=.-+ +-.++.|+-.+|....+..
T Consensus 587 aikDEV~DLEkaGikVIQiDE~A------LREGLPLR~aE~~~Yl~WAv~aFRi~~sgVqd~TQIHtH~CYSdfndi~~~ 660 (765)
T KOG2263|consen 587 AIKDEVEDLEKAGIKVIQIDEAA------LREGLPLRKAEHSFYLDWAVHAFRITNSGVQDSTQIHTHMCYSDFNDIIHS 660 (765)
T ss_pred HHHHHHHHHHHcCceEEEeChHH------HhcCCCcchhhHHHHHHHHHHHhhhccccccccchhhhhhhhhhccHHHHH
Confidence 46789999999999999988321 2222 233444441100 1245555555555555555
Q ss_pred HHhcCCCeEEEeccCCCCCHHHHHHHHhhCCCcccchhhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCCccceee
Q psy11600 83 MADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAI 162 (277)
Q Consensus 83 l~~ag~d~i~~H~e~~d~g~~~i~~i~~~~~~~~d~p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~i 162 (277)
..+..+|.+++..-- +-...+...++ |.+-|.+|
T Consensus 661 I~~mDADVitIEnSr---------------------------------------------sD~kllsvf~~-gvkY~~~I 694 (765)
T KOG2263|consen 661 IIDMDADVITIENSR---------------------------------------------SDEKLLSVFRE-GVKYGAGI 694 (765)
T ss_pred HHhccCcEEEEecCc---------------------------------------------chHHHHHHHhc-cCcccCCc
Confidence 555555555332211 12344444443 56678888
Q ss_pred CCCCCHHhHHHHHhhcCceEEEEecCCCCCchhhhhhhhhHHHHHhhCCCccEEE
Q psy11600 163 KPKTPVDVIAEYIESADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEV 217 (277)
Q Consensus 163 ~p~t~~~~i~~~i~~~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~~~~~i~v 217 (277)
.||.= | --.|--| -.++..++|..+.+.+|.-.+||
T Consensus 695 GpG~~-----------D-----IHSPRiP---s~dE~~erI~~~l~~~~~~~lWv 730 (765)
T KOG2263|consen 695 GPGVY-----------D-----IHSPRIP---STDEIAERINKMLAVLPQNILWV 730 (765)
T ss_pred CCcee-----------c-----ccCCCCC---CHHHHHHHHHHHHHhcccccEEE
Confidence 88841 0 0135443 24577788888888888888887
No 305
>PRK07695 transcriptional regulator TenI; Provisional
Probab=86.68 E-value=11 Score=32.55 Aligned_cols=79 Identities=13% Similarity=0.021 Sum_probs=49.3
Q ss_pred HHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEEec-c-CC--C----CCHHHHHHHHhhCCCcccc----hhhh
Q psy11600 55 VKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTFHV-E-PV--D----NVPQVIRQIKEAGMKVGQV----LQDW 122 (277)
Q Consensus 55 v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~H~-e-~~--d----~g~~~i~~i~~~~~~~~d~----p~~~ 122 (277)
++++|+.+|+..+-+ -+.+++ ++....+.|+|++.++. - .. . .+...++++++....|+-. ..+-
T Consensus 86 ~~~~r~~~~~~~ig~--s~~s~e-~a~~a~~~Gadyi~~g~v~~t~~k~~~~~~g~~~l~~~~~~~~ipvia~GGI~~~~ 162 (201)
T PRK07695 86 VRSVREKFPYLHVGY--SVHSLE-EAIQAEKNGADYVVYGHVFPTDCKKGVPARGLEELSDIARALSIPVIAIGGITPEN 162 (201)
T ss_pred HHHHHHhCCCCEEEE--eCCCHH-HHHHHHHcCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHhCCCCEEEEcCCCHHH
Confidence 456676666655444 344444 56778889999997642 1 11 1 1667888887766555533 2334
Q ss_pred hHHHHhcCCCeEEe
Q psy11600 123 IEPMADANVDQYTF 136 (277)
Q Consensus 123 i~~~~~~g~d~it~ 136 (277)
+..+.++|++.+.+
T Consensus 163 ~~~~~~~Ga~gvav 176 (201)
T PRK07695 163 TRDVLAAGVSGIAV 176 (201)
T ss_pred HHHHHHcCCCEEEE
Confidence 66777888888765
No 306
>COG2108 Uncharacterized conserved protein related to pyruvate formate-lyase activating enzyme [General function prediction only]
Probab=86.66 E-value=3.3 Score=39.01 Aligned_cols=31 Identities=23% Similarity=0.403 Sum_probs=25.1
Q ss_pred eeeeeeec--cCcHH-hHHHHHhcCCCeEEEecc
Q psy11600 66 FFETHMMV--QNPQQ-WIEPMADANVDQYTFHVE 96 (277)
Q Consensus 66 ~~d~Hlmv--~~p~~-~i~~l~~ag~d~i~~H~e 96 (277)
.+++||.+ ..+.+ -++.|.+||.|-+-||..
T Consensus 110 ~fHiHLYT~g~~~~~e~l~~L~eAGLDEIRfHp~ 143 (353)
T COG2108 110 DFHIHLYTTGILATEEALKALAEAGLDEIRFHPP 143 (353)
T ss_pred ceeEEEeeccccCCHHHHHHHHhCCCCeEEecCC
Confidence 48999998 44444 488999999999999985
No 307
>TIGR00559 pdxJ pyridoxine 5'-phosphate synthase. PdxJ is required in the biosynthesis of pyridoxine (vitamin B6), a precursor to the enzyme cofactor pyridoxal phosphate. ECOCYC describes the predicted reaction equation as 1-amino-propan-2-one-3-phosphate + deoxyxylulose-5-phosphate = pyridoxine-5'-phosphate. The product of that reaction is oxidized by PdxH to pyridoxal 5'-phosphate.
Probab=86.60 E-value=20 Score=32.34 Aligned_cols=103 Identities=14% Similarity=0.118 Sum_probs=67.8
Q ss_pred CcHHhHHHHHhcCCCeEEEeccCCCC--CHHHHHHHHhhCCCcc--cc--hhhhhHHHHhcCCCeEEeecCCCCChHHHH
Q psy11600 75 NPQQWIEPMADANVDQYTFHVEPVDN--VPQVIRQIKEAGMKVG--QV--LQDWIEPMADANVDQYTFHVEPVDNVPQVI 148 (277)
Q Consensus 75 ~p~~~i~~l~~ag~d~i~~H~e~~d~--g~~~i~~i~~~~~~~~--d~--p~~~i~~~~~~g~d~it~H~E~~~~~~~~~ 148 (277)
+|-+......++|||.||+|.-.--- -.+-+..+++....++ ++ -+++++...+..++++|+=+| ...++
T Consensus 22 d~v~aA~~a~~aGAdgITvHlReDrRHI~d~Dv~~l~~~~~~~lNlE~a~~~emi~ia~~vkP~~vtLVPE---kr~El- 97 (237)
T TIGR00559 22 DPLRAALIAEQAGADGITVHLREDRRHIQDRDVYDLKEALTTPFNIEMAPTEEMIRIAEEIKPEQVTLVPE---ARDEV- 97 (237)
T ss_pred CHHHHHHHHHHcCCCEEEecCCCCcCcCCHHHHHHHHHHcCCCEEeccCCCHHHHHHHHHcCCCEEEECCC---CCCCc-
Confidence 56777888899999999999763211 4466788888765544 33 467888889999999999888 33221
Q ss_pred HHHHHhCCccceeeCCCCC---HHhHHHHHhhcCceEEEEecCC
Q psy11600 149 RQIKEAGMKVGLAIKPKTP---VDVIAEYIESADLVLIMTVEPG 189 (277)
Q Consensus 149 ~~I~~~g~~~g~~i~p~t~---~~~i~~~i~~~d~vl~mav~Pg 189 (277)
.-.-|+..... +..+...++..++..-+-++|.
T Consensus 98 --------TTegGldv~~~~~~l~~~i~~l~~~gI~VSLFiDP~ 133 (237)
T TIGR00559 98 --------TTEGGLDVARLKDKLCELVKRFHAAGIEVSLFIDAD 133 (237)
T ss_pred --------cCCcCchhhhCHHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 01222222222 2334455677777777888885
No 308
>KOG2550|consensus
Probab=86.56 E-value=3 Score=40.49 Aligned_cols=79 Identities=19% Similarity=0.289 Sum_probs=59.0
Q ss_pred CceEeeeccccCcccHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHH
Q psy11600 5 QCMIGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMA 84 (277)
Q Consensus 5 ~~~~~~s~~~~d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~ 84 (277)
|.+.+++|=.-|.. .+.++.|.++|+|++=+|.--|+-+ |-.++++++|+.||++.+-..=-| -.++.+.|.
T Consensus 239 qll~gAaiGTre~d--K~rl~ll~~aGvdvviLDSSqGnS~----~qiemik~iK~~yP~l~ViaGNVV--T~~qa~nLI 310 (503)
T KOG2550|consen 239 QLLCGAAIGTRDDD--KERLDLLVQAGVDVVILDSSQGNSI----YQLEMIKYIKETYPDLQIIAGNVV--TKEQAANLI 310 (503)
T ss_pred ceeeeeccccccch--hHHHHHhhhcCCcEEEEecCCCcch----hHHHHHHHHHhhCCCceeecccee--eHHHHHHHH
Confidence 33444555444444 3577888999999999999999876 788999999999999765443333 234677899
Q ss_pred hcCCCeE
Q psy11600 85 DANVDQY 91 (277)
Q Consensus 85 ~ag~d~i 91 (277)
++|+|.+
T Consensus 311 ~aGaDgL 317 (503)
T KOG2550|consen 311 AAGADGL 317 (503)
T ss_pred HccCcee
Confidence 9999998
No 309
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=86.26 E-value=7.8 Score=35.25 Aligned_cols=120 Identities=18% Similarity=0.236 Sum_probs=70.3
Q ss_pred cCcccHHHHHHHHHHcCCCEEEEecc--cc---ccccCCCC-CHHHHHHHHhcC-CCCeeeeeeeccC-cHHhHHHHHhc
Q psy11600 15 SDLSNLHSESQNLLDSGADYLHLDVM--DG---TFVPNLTF-GHPVVKCLRNKI-PKAFFETHMMVQN-PQQWIEPMADA 86 (277)
Q Consensus 15 ~d~~~l~~~~~~l~~~~~~~~h~Dim--Dg---~fvp~~~~-g~~~v~~l~~~~-~~~~~d~Hlmv~~-p~~~i~~l~~a 86 (277)
++.....+-.+.|.++|+|+ +++- .+ .+.....| ..+.++++++.. ++.++.++....+ ..+.++...+.
T Consensus 17 f~~~~~~~ia~~L~~~GVd~--IEvG~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~ 94 (266)
T cd07944 17 FGDEFVKAIYRALAAAGIDY--VEIGYRSSPEKEFKGKSAFCDDEFLRRLLGDSKGNTKIAVMVDYGNDDIDLLEPASGS 94 (266)
T ss_pred CCHHHHHHHHHHHHHCCCCE--EEeecCCCCccccCCCccCCCHHHHHHHHhhhccCCEEEEEECCCCCCHHHHHHHhcC
Confidence 33444456677788899888 4442 11 12112223 257788887653 3566666554443 34568888889
Q ss_pred CCCeEEEecc--CCCCCHHHHHHHHhhCCCcc----cc----h---hhhhHHHHhcCCCeEEe
Q psy11600 87 NVDQYTFHVE--PVDNVPQVIRQIKEAGMKVG----QV----L---QDWIEPMADANVDQYTF 136 (277)
Q Consensus 87 g~d~i~~H~e--~~d~g~~~i~~i~~~~~~~~----d~----p---~~~i~~~~~~g~d~it~ 136 (277)
|++++.+=+. ..+...+.++.+|+....+. +. | .++++.+.++|++.|++
T Consensus 95 gv~~iri~~~~~~~~~~~~~i~~ak~~G~~v~~~~~~a~~~~~~~~~~~~~~~~~~g~~~i~l 157 (266)
T cd07944 95 VVDMIRVAFHKHEFDEALPLIKAIKEKGYEVFFNLMAISGYSDEELLELLELVNEIKPDVFYI 157 (266)
T ss_pred CcCEEEEecccccHHHHHHHHHHHHHCCCeEEEEEEeecCCCHHHHHHHHHHHHhCCCCEEEE
Confidence 9998733222 22235667777777764321 11 3 44556778899999877
No 310
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=86.24 E-value=26 Score=31.84 Aligned_cols=167 Identities=18% Similarity=0.199 Sum_probs=88.5
Q ss_pred cHHHHHHHHHHcCCCEEEE--eccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccC--------c------HHhHHH
Q psy11600 19 NLHSESQNLLDSGADYLHL--DVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQN--------P------QQWIEP 82 (277)
Q Consensus 19 ~l~~~~~~l~~~~~~~~h~--DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~--------p------~~~i~~ 82 (277)
++++. ...++.|+|.+.+ +...|-..|+ ..+++..++. .+ +-+|.|+.- . .+.++.
T Consensus 10 s~~~a-~~A~~~GAdRiELc~~L~~GGlTPS----~g~i~~~~~~-~~--ipv~vMIRPR~gdF~Ys~~E~~~M~~di~~ 81 (248)
T PRK11572 10 SMECA-LTAQQAGADRIELCAAPKEGGLTPS----LGVLKSVRER-VT--IPVHPIIRPRGGDFCYSDGEFAAMLEDIAT 81 (248)
T ss_pred CHHHH-HHHHHcCCCEEEEccCcCCCCcCCC----HHHHHHHHHh-cC--CCeEEEEecCCCCCCCCHHHHHHHHHHHHH
Confidence 34444 4556789999765 4455777776 3458888864 44 557888852 1 124677
Q ss_pred HHhcCCCeEEEeccCCCCCHHHHHHHHhhCCCcccchhhhhHHH-HhcCCCeEEeecCCCCChHHHHHHHHHhCCcccee
Q psy11600 83 MADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPM-ADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLA 161 (277)
Q Consensus 83 l~~ag~d~i~~H~e~~d~g~~~i~~i~~~~~~~~d~p~~~i~~~-~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~ 161 (277)
+.+.|+|-+-|=+=..++ .+..+..+.| ..++.--+|||--= +.+.+..+.+++
T Consensus 82 ~~~~GadGvV~G~L~~dg----------------~vD~~~~~~Li~~a~~~~vTFHRAf-D~~~d~~~al~~-------- 136 (248)
T PRK11572 82 VRELGFPGLVTGVLDVDG----------------HVDMPRMRKIMAAAGPLAVTFHRAF-DMCANPLNALKQ-------- 136 (248)
T ss_pred HHHcCCCEEEEeeECCCC----------------CcCHHHHHHHHHHhcCCceEEechh-hccCCHHHHHHH--------
Confidence 778888877442211121 0111222222 23344567888520 001111122221
Q ss_pred eCCCCCHHhHHHHHhhcCceEEEEecCCCCCchhhhhhhhhHHHHHhhCCCccEEEeCCCCcCcHHHHHHccCC
Q psy11600 162 IKPKTPVDVIAEYIESADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKCLTG 235 (277)
Q Consensus 162 i~p~t~~~~i~~~i~~~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~~~~~i~vdGgV~~~tv~~~~~~gpg 235 (277)
+...++--++|- |. ..-..+-++.++++.++.....|..=|||+..|++++.+.|..
T Consensus 137 -------------l~~lG~~rILTS--Gg--~~~a~~g~~~L~~lv~~a~~~~Im~GgGV~~~Nv~~l~~tG~~ 193 (248)
T PRK11572 137 -------------LADLGVARILTS--GQ--QQDAEQGLSLIMELIAASDGPIIMAGAGVRLSNLHKFLDAGVR 193 (248)
T ss_pred -------------HHHcCCCEEECC--CC--CCCHHHHHHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHHcCCC
Confidence 112233333331 21 1224555666777766656555888999999999998765544
No 311
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=85.98 E-value=19 Score=35.25 Aligned_cols=12 Identities=25% Similarity=0.506 Sum_probs=10.1
Q ss_pred CCeEEEeCCCCc
Q psy11600 258 TLNIEVDGGVGP 269 (277)
Q Consensus 258 ~~~I~VDGGI~~ 269 (277)
...|..||||..
T Consensus 327 ~vpviadGGi~~ 338 (450)
T TIGR01302 327 GIPVIADGGIRY 338 (450)
T ss_pred CCeEEEeCCCCC
Confidence 567999999985
No 312
>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder. It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....
Probab=85.97 E-value=21 Score=31.24 Aligned_cols=93 Identities=18% Similarity=0.212 Sum_probs=56.3
Q ss_pred HHHHHHHcCCCEEEEeccccccccCCCCC---------HHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEE
Q psy11600 23 ESQNLLDSGADYLHLDVMDGTFVPNLTFG---------HPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTF 93 (277)
Q Consensus 23 ~~~~l~~~~~~~~h~DimDg~fvp~~~~g---------~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~ 93 (277)
...+..+.|+|+ +||-=+..-|+.+.- .++|+.+++.++++++.++- .+|+-. +...++|++++
T Consensus 24 ~a~~~~~~GAdi--IDIg~~st~p~~~~v~~~eE~~rl~~~l~~i~~~~~~~plSIDT--~~~~v~-~~aL~~g~~~i-- 96 (210)
T PF00809_consen 24 RAREQVEAGADI--IDIGAESTRPGATPVSEEEEMERLVPVLQAIREENPDVPLSIDT--FNPEVA-EAALKAGADII-- 96 (210)
T ss_dssp HHHHHHHTT-SE--EEEESSTSSTTSSSSHHHHHHHHHHHHHHHHHHHHTTSEEEEEE--SSHHHH-HHHHHHTSSEE--
T ss_pred HHHHHHHhcCCE--EEecccccCCCCCcCCHHHHHHHHHHHHHHHhccCCCeEEEEEC--CCHHHH-HHHHHcCcceE--
Confidence 455667789999 888655555554442 24556666534678877764 456544 44445599987
Q ss_pred eccCCCCCHHHHHHHHhhCCCcccchhhhhHHHHhcCCCeEEeecC
Q psy11600 94 HVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPMADANVDQYTFHVE 139 (277)
Q Consensus 94 H~e~~d~g~~~i~~i~~~~~~~~d~p~~~i~~~~~~g~d~it~H~E 139 (277)
.++..+- .-...++..+++|+.+|.+|..
T Consensus 97 -nd~~~~~----------------~~~~~~~l~a~~~~~vV~m~~~ 125 (210)
T PF00809_consen 97 -NDISGFE----------------DDPEMLPLAAEYGAPVVLMHSD 125 (210)
T ss_dssp -EETTTTS----------------SSTTHHHHHHHHTSEEEEESES
T ss_pred -Eeccccc----------------ccchhhhhhhcCCCEEEEEecc
Confidence 2332210 0134567778888888888876
No 313
>PRK01207 methionine synthase; Provisional
Probab=85.79 E-value=26 Score=33.36 Aligned_cols=72 Identities=17% Similarity=0.261 Sum_probs=45.0
Q ss_pred cHHHHHHHHHHc------CCC-EEEEeccccccccCCCCCH----HHHHHHHhcCCCC--eeeeeeecc-CcHHhHHHHH
Q psy11600 19 NLHSESQNLLDS------GAD-YLHLDVMDGTFVPNLTFGH----PVVKCLRNKIPKA--FFETHMMVQ-NPQQWIEPMA 84 (277)
Q Consensus 19 ~l~~~~~~l~~~------~~~-~~h~DimDg~fvp~~~~g~----~~v~~l~~~~~~~--~~d~Hlmv~-~p~~~i~~l~ 84 (277)
-|.+|++.|+++ |++ .+.+|==. ++-++ ..++.++.....+ .+.+|+--. +....++.+.
T Consensus 153 al~~Ev~~L~~a~~~~~~G~~~~IQiDEPa------l~~~~~~l~~av~a~n~~~~gv~~~i~~H~C~g~~~~~i~~~i~ 226 (343)
T PRK01207 153 IINEELKDIKSAWDRKSPGRKLEIQIDEPA------TTTHPDEMDIVVDSINKSVYGIDNEFSIHVCYSSDYRLLYDRIP 226 (343)
T ss_pred HHHHHHHHHHhhhcccccCCceEEEEeCCC------cCCChHHHHHHHHHHHHHHhCCCCcEEEEEEcCCChHHHHHHHH
Confidence 467899999999 898 68888322 22222 2333444332222 455565555 5666788899
Q ss_pred hcCCCeEEEeccCC
Q psy11600 85 DANVDQYTFHVEPV 98 (277)
Q Consensus 85 ~ag~d~i~~H~e~~ 98 (277)
+..+|.+ .+|..
T Consensus 227 ~~~~d~~--~~E~a 238 (343)
T PRK01207 227 ELNIDGY--NLEYS 238 (343)
T ss_pred hCCCCEE--EEEec
Confidence 9999998 44543
No 314
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=85.77 E-value=9.7 Score=35.23 Aligned_cols=128 Identities=14% Similarity=0.116 Sum_probs=94.0
Q ss_pred eeccccCcccHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeee-----------------eee
Q psy11600 10 PSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFET-----------------HMM 72 (277)
Q Consensus 10 ~s~~~~d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~-----------------Hlm 72 (277)
|=.+..|-..--+.+.+..+.|.+++-+|--.-+|=-|+..--++++.-+.. ++.+++ +-.
T Consensus 76 PV~lHLDHg~~~e~i~~Ai~~GftSVM~DgS~l~~eeNi~~T~~vv~~Ah~~--gv~VEaElG~vgg~e~~~~~~~~~~~ 153 (284)
T PRK09195 76 PLALHLDHHEKFDDIAQKVRSGVRSVMIDGSHLPFAQNISLVKEVVDFCHRF--DVSVEAELGRLGGQEDDLQVDEADAL 153 (284)
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCEEEeCCCCCCHHHHHHHHHHHHHHHHHc--CCEEEEEEecccCcccCccccccccc
Confidence 4456677775567777888889999999877777777877777777776653 333322 233
Q ss_pred ccCcHHhHHHHHhcCCCeEEEeccCCCC--------CHHHHHHHHhhCCCcccc------hhhhhHHHHhcCCCeEEeec
Q psy11600 73 VQNPQQWIEPMADANVDQYTFHVEPVDN--------VPQVIRQIKEAGMKVGQV------LQDWIEPMADANVDQYTFHV 138 (277)
Q Consensus 73 v~~p~~~i~~l~~ag~d~i~~H~e~~d~--------g~~~i~~i~~~~~~~~d~------p~~~i~~~~~~g~d~it~H~ 138 (277)
..+|++-.+.+.+.|+|++.+=+-..-| -.+.++.|++....|+-+ |++.+...++.|+.-|-+..
T Consensus 154 ~T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~p~Ld~~~L~~I~~~~~vPLVLHGgSG~~~e~~~~ai~~Gi~KiNi~T 233 (284)
T PRK09195 154 YTDPAQAREFVEATGIDSLAVAIGTAHGMYKGEPKLDFDRLENIRQWVNIPLVLHGASGLPTKDIQQTIKLGICKVNVAT 233 (284)
T ss_pred CCCHHHHHHHHHHHCcCEEeeccCccccccCCCCcCCHHHHHHHHHHhCCCeEEecCCCCCHHHHHHHHHcCCeEEEeCc
Confidence 5678887777778899999765544333 678999999987666532 99999999999999999976
Q ss_pred C
Q psy11600 139 E 139 (277)
Q Consensus 139 E 139 (277)
|
T Consensus 234 ~ 234 (284)
T PRK09195 234 E 234 (284)
T ss_pred H
Confidence 5
No 315
>PLN02363 phosphoribosylanthranilate isomerase
Probab=85.64 E-value=28 Score=31.67 Aligned_cols=148 Identities=14% Similarity=0.163 Sum_probs=80.2
Q ss_pred HhHHHHHhcCCCeEEEeccCCC---CCHHHHHHHHhhCC----Ccc----c-chhhhhHHHHhcCCCeEEeecCCCCChH
Q psy11600 78 QWIEPMADANVDQYTFHVEPVD---NVPQVIRQIKEAGM----KVG----Q-VLQDWIEPMADANVDQYTFHVEPVDNVP 145 (277)
Q Consensus 78 ~~i~~l~~ag~d~i~~H~e~~d---~g~~~i~~i~~~~~----~~~----d-~p~~~i~~~~~~g~d~it~H~E~~~~~~ 145 (277)
+.++.+.++|+|++-|=+.... -.+...++|.+.-. ..+ + .++..++...++|.|.+=+|-. ...
T Consensus 58 eda~~a~~~GaD~iGfIf~~~SpR~Vs~e~a~~I~~~l~~~~~~~VgVfv~~~~~~I~~~~~~~~ld~VQLHG~---e~~ 134 (256)
T PLN02363 58 RDAAMAVEAGADFIGMILWPKSKRSISLSVAKEISQVAREGGAKPVGVFVDDDANTILRAADSSDLELVQLHGN---GSR 134 (256)
T ss_pred HHHHHHHHcCCCEEEEecCCCCCCcCCHHHHHHHHHhccccCccEEEEEeCCCHHHHHHHHHhcCCCEEEECCC---CCH
Confidence 3577788999999987543321 14555566655321 111 1 1677778888999999999964 333
Q ss_pred HHHHHHHHhCCccceeeCCCCC---HHhHHHH-HhhcCceEEEEecCCCCCchhhhhhhhhHHHHHhhCCCccEEEeCCC
Q psy11600 146 QVIRQIKEAGMKVGLAIKPKTP---VDVIAEY-IESADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGV 221 (277)
Q Consensus 146 ~~~~~I~~~g~~~g~~i~p~t~---~~~i~~~-i~~~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~~~~~i~vdGgV 221 (277)
..++.++.. .+.=-+++.... ++.+.++ -..+|.+++=+- .|..|..|.-..+.. ..+.....+.+.||+
T Consensus 135 ~~~~~l~~~-~~iikai~v~~~~~~~~~~~~~~~~~~D~~LlDs~-~GGtG~t~DW~~l~~----~~~~~~~p~iLAGGL 208 (256)
T PLN02363 135 AAFSRLVRE-RKVIYVLNANEDGKLLNVVPEEDCHLADWILVDSA-TGGSGKGFNWQNFKL----PSVRSRNGWLLAGGL 208 (256)
T ss_pred HHHHHhhcC-CcEEEEEEECchHHHHHHHHhhccccCCEEEEeCC-CCCCCCccCHHHhcc----cccccCCCEEEECCC
Confidence 444444421 122223333222 1222221 123676664442 344455554322210 011122357899999
Q ss_pred CcCcHHHHHH-ccC
Q psy11600 222 GPNTIDECAK-CLT 234 (277)
Q Consensus 222 ~~~tv~~~~~-~gp 234 (277)
+.+|+.+... .+|
T Consensus 209 ~peNV~~ai~~~~P 222 (256)
T PLN02363 209 TPENVHEAVSLLKP 222 (256)
T ss_pred CHHHHHHHHHhcCC
Confidence 9999998764 566
No 316
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=85.48 E-value=9.4 Score=33.77 Aligned_cols=96 Identities=13% Similarity=0.172 Sum_probs=57.1
Q ss_pred EeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEEe-ccCCCC---CHHHHHHHHhhC
Q psy11600 37 LDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTFH-VEPVDN---VPQVIRQIKEAG 112 (277)
Q Consensus 37 ~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~H-~e~~d~---g~~~i~~i~~~~ 112 (277)
+|++||..|.-.. |- ++.+..+. ..-....+|.+.++.+.+.|++++|+= +|...+ ...+|+++.+..
T Consensus 7 iDl~~g~~Vr~~~-G~------~~~~~~~~-~~~~~~~dP~~~a~~~~~~g~~~l~ivDLd~~~~~~~n~~~i~~i~~~~ 78 (221)
T TIGR00734 7 IDLKDGIAVAGKS-GE------RESYPPLE-SVSRLSSSPDDAAKVIEEIGARFIYIADLDRIVGLGDNFSLLSKLSKRV 78 (221)
T ss_pred EEeeCCEEEEccc-cC------cccccccc-cceecCCCHHHHHHHHHHcCCCEEEEEEcccccCCcchHHHHHHHHhhC
Confidence 7999999885321 11 11111110 223457899999999999999999321 233222 457788888764
Q ss_pred CCcccc------hhhhhHHHHh--cCCCeEEeecCCCCC
Q psy11600 113 MKVGQV------LQDWIEPMAD--ANVDQYTFHVEPVDN 143 (277)
Q Consensus 113 ~~~~d~------p~~~i~~~~~--~g~d~it~H~E~~~~ 143 (277)
|+.+ +++ ++.+.. .+|+.+.+-.++.++
T Consensus 79 --~v~vgGGirs~e~-~~~~~~~l~~a~rvvigT~a~~~ 114 (221)
T TIGR00734 79 --ELIADCGVRSPED-LETLPFTLEFASRVVVATETLDI 114 (221)
T ss_pred --cEEEcCccCCHHH-HHHHHhhhccceEEeecChhhCC
Confidence 4443 333 333322 359999998874333
No 317
>TIGR00284 dihydropteroate synthase-related protein. This protein has been found so far only in the Archaea, and in particular in those archaea that lack a bacterial-type dihydropteroate synthase. The central region of this protein shows considerable homology to the amino-terminal half of dihydropteroate synthases, while the carboxyl-terminal region shows homology to the small, uncharacterized protein slr0651 of Synechocystis PCC6803.
Probab=85.46 E-value=42 Score=33.58 Aligned_cols=108 Identities=9% Similarity=-0.004 Sum_probs=63.6
Q ss_pred ceEeeeccccCcc-cHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHH
Q psy11600 6 CMIGPSILNSDLS-NLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMA 84 (277)
Q Consensus 6 ~~~~~s~~~~d~~-~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~ 84 (277)
++|..-|..+-.. .+.+..+.+.+.|+|. +||-=+...|+..-=.+.|+.+++. .+.+++++ +.+|.. ++...
T Consensus 152 ~~v~aEI~~a~~l~~i~~~A~~~~~~GADI--IDIG~~st~p~~~~v~~~V~~l~~~-~~~pISID--T~~~~v-~eaAL 225 (499)
T TIGR00284 152 LRVVAEIPPTVAEDGIEGLAARMERDGADM--VALGTGSFDDDPDVVKEKVKTALDA-LDSPVIAD--TPTLDE-LYEAL 225 (499)
T ss_pred eEEEEEEcCCcchHHHHHHHHHHHHCCCCE--EEECCCcCCCcHHHHHHHHHHHHhh-CCCcEEEe--CCCHHH-HHHHH
Confidence 4454455433333 3456666677889999 8887555555322112567777764 46776665 345543 55566
Q ss_pred hcCCCeEEEeccCCCCCHHHHHHHHhhCCCcccchhhhhHHHHhcCCCeEEeecC
Q psy11600 85 DANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPMADANVDQYTFHVE 139 (277)
Q Consensus 85 ~ag~d~i~~H~e~~d~g~~~i~~i~~~~~~~~d~p~~~i~~~~~~g~d~it~H~E 139 (277)
++|+++|- ++..+. -+..++..+++|+..|.+|..
T Consensus 226 ~aGAdiIN---sVs~~~-----------------~d~~~~l~a~~g~~vVlm~~~ 260 (499)
T TIGR00284 226 KAGASGVI---MPDVEN-----------------AVELASEKKLPEDAFVVVPGN 260 (499)
T ss_pred HcCCCEEE---ECCccc-----------------hhHHHHHHHHcCCeEEEEcCC
Confidence 67999882 321110 013345567789999999954
No 318
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=85.39 E-value=14 Score=34.85 Aligned_cols=118 Identities=15% Similarity=0.191 Sum_probs=73.4
Q ss_pred CcccHHHHHHHHHHcCCCEEEEecc--c----cccccCCC-C-CHHHHHHHHhcCCCCeeeeeeec--cCcHHhHHHHHh
Q psy11600 16 DLSNLHSESQNLLDSGADYLHLDVM--D----GTFVPNLT-F-GHPVVKCLRNKIPKAFFETHMMV--QNPQQWIEPMAD 85 (277)
Q Consensus 16 d~~~l~~~~~~l~~~~~~~~h~Dim--D----g~fvp~~~-~-g~~~v~~l~~~~~~~~~d~Hlmv--~~p~~~i~~l~~ 85 (277)
......+-++.|.++|+++ +.+- | ..|..+++ + ..+.++++++..++..+-+.+.- .+ .+.++...+
T Consensus 22 ~~~~~~~ia~~Ld~aGV~~--IEvg~g~gl~g~s~~~G~~~~~~~e~i~~~~~~~~~~~~~~ll~pg~~~-~~dl~~a~~ 98 (333)
T TIGR03217 22 TIEQVRAIAAALDEAGVDA--IEVTHGDGLGGSSFNYGFSAHTDLEYIEAAADVVKRAKVAVLLLPGIGT-VHDLKAAYD 98 (333)
T ss_pred CHHHHHHHHHHHHHcCCCE--EEEecCCCCCCccccCCCCCCChHHHHHHHHHhCCCCEEEEEeccCccC-HHHHHHHHH
Confidence 3345556677888999988 4442 2 14442222 2 34677788776667666665532 23 356888899
Q ss_pred cCCCeEEE--eccCCCCCHHHHHHHHhhCCCcc----cc----hh---hhhHHHHhcCCCeEEe
Q psy11600 86 ANVDQYTF--HVEPVDNVPQVIRQIKEAGMKVG----QV----LQ---DWIEPMADANVDQYTF 136 (277)
Q Consensus 86 ag~d~i~~--H~e~~d~g~~~i~~i~~~~~~~~----d~----p~---~~i~~~~~~g~d~it~ 136 (277)
+|++++.+ |..-.+...+.++.+|+...... +. |+ ++++.+.++|++.|++
T Consensus 99 ~gvd~iri~~~~~e~d~~~~~i~~ak~~G~~v~~~l~~s~~~~~e~l~~~a~~~~~~Ga~~i~i 162 (333)
T TIGR03217 99 AGARTVRVATHCTEADVSEQHIGMARELGMDTVGFLMMSHMTPPEKLAEQAKLMESYGADCVYI 162 (333)
T ss_pred CCCCEEEEEeccchHHHHHHHHHHHHHcCCeEEEEEEcccCCCHHHHHHHHHHHHhcCCCEEEE
Confidence 99998853 32222346778888888875422 11 44 4456778889999877
No 319
>cd04824 eu_ALAD_PBGS_cysteine_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. The eukaryotic PBGSs represented by this model, which contain a cysteine-rich zinc binding motif (DXCXCX(Y/F)X3G(H/Q)CG), require zinc for their activity, they
Probab=85.36 E-value=33 Score=32.24 Aligned_cols=172 Identities=19% Similarity=0.233 Sum_probs=95.8
Q ss_pred eeccccCcccHHHHHHHHHHcCCCEEEE-ec-----cc-----cccccCCCCCHHHHHHHHhcCCCCeeeeee-------
Q psy11600 10 PSILNSDLSNLHSESQNLLDSGADYLHL-DV-----MD-----GTFVPNLTFGHPVVKCLRNKIPKAFFETHM------- 71 (277)
Q Consensus 10 ~s~~~~d~~~l~~~~~~l~~~~~~~~h~-Di-----mD-----g~fvp~~~~g~~~v~~l~~~~~~~~~d~Hl------- 71 (277)
|.+...-...+.++++++.+.|+..+=+ =| =| ..+-|| +.=.+.++.+|+.+|++.+-++.
T Consensus 43 PG~~r~s~d~l~~~~~~~~~~Gi~~v~LFgv~~~~~Kd~~~gs~a~~~~-g~v~~air~iK~~~pdl~vi~Dvclc~YT~ 121 (320)
T cd04824 43 PGINRYGVNRLEEFLRPLVAKGLRSVILFGVPLKPGKDDRSGSAADDED-GPVIQAIKLIREEFPELLIACDVCLCEYTS 121 (320)
T ss_pred CCceeeCHHHHHHHHHHHHHCCCCEEEEeCCCccccCCcCccccccCCC-ChHHHHHHHHHHhCCCcEEEEeeeccCCCC
Confidence 5666666678999999999999998422 01 11 113333 22368999999999997665433
Q ss_pred ------ec-----cC------cHHhHHHHHhcCCCeEEEeccCCCCCHHHHHHHHhh---CCCcccc---------hhhh
Q psy11600 72 ------MV-----QN------PQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEA---GMKVGQV---------LQDW 122 (277)
Q Consensus 72 ------mv-----~~------p~~~i~~l~~ag~d~i~~H~e~~d~g~~~i~~i~~~---~~~~~d~---------p~~~ 122 (277)
.- .| +.+..-...++|||.+. ..|.|||- |.+||+. ...-.++ -..|
T Consensus 122 hGHcGil~~~g~vdND~Tl~~L~k~Avs~A~AGADiVA-PSdMMDGr---V~aIR~aLD~~G~~~~v~ImSYsaKyaS~f 197 (320)
T cd04824 122 HGHCGILYEDGTINNEASVKRLAEVALAYAKAGAHIVA-PSDMMDGR---VRAIKQALIQAGLGNKVSVMSYSAKFASCL 197 (320)
T ss_pred CCcceeECCCCcCcCHHHHHHHHHHHHHHHHhCCCEEe-cccccccH---HHHHHHHHHHCCCccCCeeeehHHHhhhhc
Confidence 21 11 12223334678999986 78889974 4445443 2220122 1223
Q ss_pred hHHHHhcC------CCeEEeecCCCCChHHHHHHHHHhCCccceeeCCCCCHHhHHHHHhhcCceEEEEecCCCCCchhh
Q psy11600 123 IEPMADAN------VDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIMTVEPGFGGQKFM 196 (277)
Q Consensus 123 i~~~~~~g------~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~i~p~t~~~~i~~~i~~~d~vl~mav~Pgt~gq~~~ 196 (277)
-.+|.++- .|.=|.+.. +.+--+.+++. ..+.-+-+|++ -|.|+.+
T Consensus 198 YGPFRdAa~Sap~~gDRksYQmd----p~n~~eAlre~----------------~~D~~EGAD~l---MVKPal~----- 249 (320)
T cd04824 198 YGPFRDAACSAPSFGDRRCYQLP----PGARGLALRAV----------------ERDVSEGADMI---MVKPGTP----- 249 (320)
T ss_pred cchHHHHhcCCCCCCCccccCCC----CcCHHHHHHHH----------------HhhHHhCCCEE---EEcCCch-----
Confidence 34444331 244455543 22222233321 11223446664 4799875
Q ss_pred hhhhhhHHHHHhhCCCccEE
Q psy11600 197 QDMMPKVKWLRENYPTLNIE 216 (277)
Q Consensus 197 ~~~l~kI~~l~~~~~~~~i~ 216 (277)
+|+-|+.+++..|++-+.
T Consensus 250 --YLDIi~~~k~~~~~~Pva 267 (320)
T cd04824 250 --YLDIVREAKDKHPDLPLA 267 (320)
T ss_pred --HHHHHHHHHHhccCCCEE
Confidence 688888888877555443
No 320
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=85.36 E-value=6 Score=36.73 Aligned_cols=103 Identities=15% Similarity=0.089 Sum_probs=63.7
Q ss_pred HHcCCCEEEEeccccccccCC---CCC--HHHHHHHHhcCC-CCeeeeeeeccCcHHhHHHHHhcCCCeEEEeccCCCCC
Q psy11600 28 LDSGADYLHLDVMDGTFVPNL---TFG--HPVVKCLRNKIP-KAFFETHMMVQNPQQWIEPMADANVDQYTFHVEPVDNV 101 (277)
Q Consensus 28 ~~~~~~~~h~DimDg~fvp~~---~~g--~~~v~~l~~~~~-~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~H~e~~d~g 101 (277)
...|...--++.-|+..+..= .+| .+.++++|++.| ..++. +-|.++ +++....++|+|.+ .+|-|+
T Consensus 155 ~~GGG~~HR~gLsD~iLIkdNHi~~~g~i~~av~~~r~~~~~~~kIe--VEv~tl-eea~~a~~agaDiI--mLDnms-- 227 (290)
T PRK06559 155 RVGGGYNHRFNLSDAIMLKDNHIAAVGSVQKAIAQARAYAPFVKMVE--VEVESL-AAAEEAAAAGADII--MLDNMS-- 227 (290)
T ss_pred HhcCCcccCCCCcceEEEcHHHHHhhccHHHHHHHHHHhCCCCCeEE--EECCCH-HHHHHHHHcCCCEE--EECCCC--
Confidence 334444333555554433221 134 477888888765 34433 345666 55666778999999 777655
Q ss_pred HHHHHHHHhhC--CCcccc----hhhhhHHHHhcCCCeEEee
Q psy11600 102 PQVIRQIKEAG--MKVGQV----LQDWIEPMADANVDQYTFH 137 (277)
Q Consensus 102 ~~~i~~i~~~~--~~~~d~----p~~~i~~~~~~g~d~it~H 137 (277)
|+.++++-+.- ...+.+ ..+-++.+++.|+|+|+.-
T Consensus 228 pe~l~~av~~~~~~~~leaSGGI~~~ni~~yA~tGVD~Is~g 269 (290)
T PRK06559 228 LEQIEQAITLIAGRSRIECSGNIDMTTISRFRGLAIDYVSSG 269 (290)
T ss_pred HHHHHHHHHHhcCceEEEEECCCCHHHHHHHHhcCCCEEEeC
Confidence 56665554432 223333 6888999999999999974
No 321
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=85.32 E-value=25 Score=31.85 Aligned_cols=76 Identities=14% Similarity=0.081 Sum_probs=40.2
Q ss_pred cHHhHHHHHhcCCCeEEEeccCC-CC------------CHHHHHHHHhhCCCcccc---hhhhhHHHHhcCCCeEE-eec
Q psy11600 76 PQQWIEPMADANVDQYTFHVEPV-DN------------VPQVIRQIKEAGMKVGQV---LQDWIEPMADANVDQYT-FHV 138 (277)
Q Consensus 76 p~~~i~~l~~ag~d~i~~H~e~~-d~------------g~~~i~~i~~~~~~~~d~---p~~~i~~~~~~g~d~it-~H~ 138 (277)
..+.+..+.++|||+|=+=.+.. .+ -.++|+.+++..+.|+.+ -.+.++.-.++|+++|- +-.
T Consensus 26 ~~~~a~~~~~~GAdiIDIG~~st~p~~~~i~~~~E~~rl~~~v~~i~~~~~~plSIDT~~~~v~e~al~~G~~iINdisg 105 (257)
T cd00739 26 AVAHAEKMIAEGADIIDIGGESTRPGADPVSVEEELERVIPVLEALRGELDVLISVDTFRAEVARAALEAGADIINDVSG 105 (257)
T ss_pred HHHHHHHHHHCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCcEEEeCCCHHHHHHHHHhCCCEEEeCCC
Confidence 34456777889999992222222 11 223567777665555443 24455555666877765 333
Q ss_pred CCCCCh-HHHHHHHHHh
Q psy11600 139 EPVDNV-PQVIRQIKEA 154 (277)
Q Consensus 139 E~~~~~-~~~~~~I~~~ 154 (277)
+ .- ....+.+++.
T Consensus 106 ~---~~~~~~~~l~~~~ 119 (257)
T cd00739 106 G---SDDPAMLEVAAEY 119 (257)
T ss_pred C---CCChHHHHHHHHc
Confidence 3 11 3445555544
No 322
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=85.29 E-value=9.2 Score=33.67 Aligned_cols=117 Identities=9% Similarity=-0.100 Sum_probs=68.7
Q ss_pred ccCcccHHHHHHHHHHcCCCEEEEeccc--cccccCCCCCHHHHHHHHhcC--CCCe--eeeee--------ecc-CcHH
Q psy11600 14 NSDLSNLHSESQNLLDSGADYLHLDVMD--GTFVPNLTFGHPVVKCLRNKI--PKAF--FETHM--------MVQ-NPQQ 78 (277)
Q Consensus 14 ~~d~~~l~~~~~~l~~~~~~~~h~DimD--g~fvp~~~~g~~~v~~l~~~~--~~~~--~d~Hl--------mv~-~p~~ 78 (277)
..+...+..+++.+.+.|++. +|++. +..- -..-.+.++++++.. -+++ +++|+ ... ...+
T Consensus 72 ~~~~~~~~~~v~~a~~~Ga~~--v~~~~~~~~~~--~~~~~~~i~~v~~~~~~~g~~~iie~~~~g~~~~~~~~~~~i~~ 147 (235)
T cd00958 72 DDNDKVLVASVEDAVRLGADA--VGVTVYVGSEE--EREMLEELARVAAEAHKYGLPLIAWMYPRGPAVKNEKDPDLIAY 147 (235)
T ss_pred CCCchhhhcCHHHHHHCCCCE--EEEEEecCCch--HHHHHHHHHHHHHHHHHcCCCEEEEEeccCCcccCccCHHHHHH
Confidence 456667777889999999999 66655 3221 011112344444311 1333 34444 111 1111
Q ss_pred hHHHHHhcCCCeEEEeccCCCCCHHHHHHHHhhCCCcccc--------hh---hhhHHHHhcCCCeEEee
Q psy11600 79 WIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQV--------LQ---DWIEPMADANVDQYTFH 137 (277)
Q Consensus 79 ~i~~l~~ag~d~i~~H~e~~d~g~~~i~~i~~~~~~~~d~--------p~---~~i~~~~~~g~d~it~H 137 (277)
..+...++|+|++-+.+ .++.+.++++.+.+..|+-+ ++ +-++.+.++||+.+++-
T Consensus 148 ~~~~a~~~GaD~Ik~~~---~~~~~~~~~i~~~~~~pvv~~GG~~~~~~~~~l~~~~~~~~~Ga~gv~vg 214 (235)
T cd00958 148 AARIGAELGADIVKTKY---TGDAESFKEVVEGCPVPVVIAGGPKKDSEEEFLKMVYDAMEAGAAGVAVG 214 (235)
T ss_pred HHHHHHHHCCCEEEecC---CCCHHHHHHHHhcCCCCEEEeCCCCCCCHHHHHHHHHHHHHcCCcEEEec
Confidence 24447788999998753 33678888888877665532 22 34677889999988763
No 323
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=85.16 E-value=23 Score=32.74 Aligned_cols=72 Identities=17% Similarity=0.093 Sum_probs=40.5
Q ss_pred CCCeeeeeee--ccCcHHhHHHHHhcCCCeEEEeccCC-CC------------CHHHHHHHHhhCCCcccc---hhhhhH
Q psy11600 63 PKAFFETHMM--VQNPQQWIEPMADANVDQYTFHVEPV-DN------------VPQVIRQIKEAGMKVGQV---LQDWIE 124 (277)
Q Consensus 63 ~~~~~d~Hlm--v~~p~~~i~~l~~ag~d~i~~H~e~~-d~------------g~~~i~~i~~~~~~~~d~---p~~~i~ 124 (277)
|+-+.|=... .....+.+..+.+.|||+|=+=.++. .| -..+|+.+++....++.+ -.+.++
T Consensus 25 pDSFsdgg~~~~~~~a~~~a~~~~~~GAdIIDIGgeSTrPg~~~v~~eeE~~Rv~pvI~~l~~~~~~~ISIDT~~~~va~ 104 (282)
T PRK11613 25 PDSFSDGGTHNSLIDAVKHANLMINAGATIIDVGGESTRPGAAEVSVEEELDRVIPVVEAIAQRFEVWISVDTSKPEVIR 104 (282)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEECCCHHHHH
Confidence 4444444332 22334457777889999993333332 22 222556666544445544 455666
Q ss_pred HHHhcCCCeE
Q psy11600 125 PMADANVDQY 134 (277)
Q Consensus 125 ~~~~~g~d~i 134 (277)
.-.++||++|
T Consensus 105 ~AL~~GadiI 114 (282)
T PRK11613 105 ESAKAGAHII 114 (282)
T ss_pred HHHHcCCCEE
Confidence 6677899988
No 324
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=85.07 E-value=2.9 Score=39.66 Aligned_cols=65 Identities=15% Similarity=0.216 Sum_probs=47.5
Q ss_pred HHHHHHHH--cCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCc--HHhHHHHHhcCCCeEEEe
Q psy11600 22 SESQNLLD--SGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNP--QQWIEPMADANVDQYTFH 94 (277)
Q Consensus 22 ~~~~~l~~--~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p--~~~i~~l~~ag~d~i~~H 94 (277)
+-++.|.+ .|+|++=+|+-.|+-. +-.+.|+++|+.+|+++ ++..|- .+..+.|.++|+|.+-+=
T Consensus 111 er~~~L~~~~~g~D~iviD~AhGhs~----~~i~~ik~ik~~~P~~~----vIaGNV~T~e~a~~Li~aGAD~vKVG 179 (346)
T PRK05096 111 EKTKQILALSPALNFICIDVANGYSE----HFVQFVAKAREAWPDKT----ICAGNVVTGEMVEELILSGADIVKVG 179 (346)
T ss_pred HHHHHHHhcCCCCCEEEEECCCCcHH----HHHHHHHHHHHhCCCCc----EEEecccCHHHHHHHHHcCCCEEEEc
Confidence 34445555 5899999999999764 44578999999998865 444552 235778999999988433
No 325
>COG0191 Fba Fructose/tagatose bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=85.06 E-value=7.2 Score=36.09 Aligned_cols=106 Identities=14% Similarity=0.160 Sum_probs=81.1
Q ss_pred CcccHHHHHHHHHHcCCCEEEEeccc--ccccc-CCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEE
Q psy11600 16 DLSNLHSESQNLLDSGADYLHLDVMD--GTFVP-NLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYT 92 (277)
Q Consensus 16 d~~~l~~~~~~l~~~~~~~~h~DimD--g~fvp-~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~ 92 (277)
++.+.+++.+.++..|+|.|=+=|=- |.|-| +-.+.++.++++++. +++|+..|==..-|.+++++..+.|+--+-
T Consensus 154 ~~tdp~ea~~fv~~tgiD~LA~aiGn~HG~Yk~~~p~L~~~~L~~i~~~-~~~PlVlHGgSGip~~eI~~aI~~GV~KvN 232 (286)
T COG0191 154 DLTDPEEALEFVERTGIDALAAAIGNVHGVYKPGNPKLDFDRLKEIQEA-VSLPLVLHGGSGIPDEEIREAIKLGVAKVN 232 (286)
T ss_pred hhCCHHHHHHHHhccCcceeeeeccccccCCCCCCCCCCHHHHHHHHHH-hCCCEEEeCCCCCCHHHHHHHHHhCceEEe
Confidence 47788999999999999998888877 77865 666889999999985 889999999999999999999999999885
Q ss_pred EeccCCCCCHHHHHHHHhhCCC-c-ccchhhhhHH
Q psy11600 93 FHVEPVDNVPQVIRQIKEAGMK-V-GQVLQDWIEP 125 (277)
Q Consensus 93 ~H~e~~d~g~~~i~~i~~~~~~-~-~d~p~~~i~~ 125 (277)
+.-| .-.-+..++|+.-.. + .--|..|+..
T Consensus 233 i~Td---~~~A~~~avr~~~~~~~k~~DpR~~l~~ 264 (286)
T COG0191 233 IDTD---LQLAFTAAVREYLAENPKEYDPRKYLKP 264 (286)
T ss_pred eCcH---HHHHHHHHHHHHHHhCcccCCHHHHHHH
Confidence 5533 233455666665321 1 1116666654
No 326
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=85.03 E-value=29 Score=31.28 Aligned_cols=100 Identities=17% Similarity=0.233 Sum_probs=59.9
Q ss_pred cCcccHHHHHHHHHHcCCCEEEEeccccccccCCCC-C--------HHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHh
Q psy11600 15 SDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTF-G--------HPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMAD 85 (277)
Q Consensus 15 ~d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~-g--------~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ 85 (277)
.|.....+..+.+.+.|+|. +||==+..-|+-.. + .+.|+.+++. ++.++ -+-+.+|+- ++...+
T Consensus 21 ~~~~~~~~~a~~~~~~GAdi--IDvG~~st~p~~~~~~~~~E~~rl~~~v~~l~~~-~~~pi--SIDT~~~~v-~~aaL~ 94 (258)
T cd00423 21 LSLDKALEHARRMVEEGADI--IDIGGESTRPGAEPVSVEEELERVIPVLRALAGE-PDVPI--SVDTFNAEV-AEAALK 94 (258)
T ss_pred CCHHHHHHHHHHHHHCCCCE--EEECCCcCCCCCCcCCHHHHHHHHHHHHHHHHhc-CCCeE--EEeCCcHHH-HHHHHH
Confidence 46666667777778889999 78764444454211 0 2456666653 45554 445556654 555566
Q ss_pred cCCCeEEEeccCCCCCHHHHHHHHhhCCCcccchhhhhHHHHhcCCCeEEeecC
Q psy11600 86 ANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPMADANVDQYTFHVE 139 (277)
Q Consensus 86 ag~d~i~~H~e~~d~g~~~i~~i~~~~~~~~d~p~~~i~~~~~~g~d~it~H~E 139 (277)
+|+++| .++.-+. . ....++..+++|+.+|.+|..
T Consensus 95 ~g~~iI---Ndis~~~--------------~--~~~~~~l~~~~~~~vV~m~~~ 129 (258)
T cd00423 95 AGADII---NDVSGGR--------------G--DPEMAPLAAEYGAPVVLMHMD 129 (258)
T ss_pred hCCCEE---EeCCCCC--------------C--ChHHHHHHHHcCCCEEEECcC
Confidence 788887 2322110 0 123456677889999999864
No 327
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=84.90 E-value=10 Score=35.05 Aligned_cols=128 Identities=13% Similarity=0.165 Sum_probs=89.1
Q ss_pred eeccccCcccHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeee---------------eeecc
Q psy11600 10 PSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFET---------------HMMVQ 74 (277)
Q Consensus 10 ~s~~~~d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~---------------Hlmv~ 74 (277)
|=.+..|-..--+.+.+..+.|.+++-+|--.=+|-.|+..--++++.-++. ++++++ .-...
T Consensus 76 PV~lHLDH~~~~e~i~~Ai~~GftSVM~DgS~l~~eeNi~~T~~vve~Ah~~--gv~VEaElG~vgg~ed~~~~~~~~~T 153 (283)
T PRK07998 76 PVSLHLDHGKTFEDVKQAVRAGFTSVMIDGAALPFEENIAFTKEAVDFAKSY--GVPVEAELGAILGKEDDHVSEADCKT 153 (283)
T ss_pred CEEEECcCCCCHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHc--CCEEEEEeccCCCccccccccccccC
Confidence 3345566665556677777889999998765556656777666666665543 554422 12245
Q ss_pred CcHHhHHHHHhcCCCeEEEeccCCCC-------CHHHHHHHHhhCCCcccc------hhhhhHHHHhcCCCeEEeecC
Q psy11600 75 NPQQWIEPMADANVDQYTFHVEPVDN-------VPQVIRQIKEAGMKVGQV------LQDWIEPMADANVDQYTFHVE 139 (277)
Q Consensus 75 ~p~~~i~~l~~ag~d~i~~H~e~~d~-------g~~~i~~i~~~~~~~~d~------p~~~i~~~~~~g~d~it~H~E 139 (277)
+|++-.+.+.+.|+|++.+=+-..-| -.+.++.|++.+..|+-+ |++.+...+++|+.-|.+..|
T Consensus 154 ~pe~a~~Fv~~TgvD~LAvaiGt~HG~Y~~p~l~~~~l~~I~~~~~vPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~Te 231 (283)
T PRK07998 154 EPEKVKDFVERTGCDMLAVSIGNVHGLEDIPRIDIPLLKRIAEVSPVPLVIHGGSGIPPEILRSFVNYKVAKVNIASD 231 (283)
T ss_pred CHHHHHHHHHHhCcCeeehhccccccCCCCCCcCHHHHHHHHhhCCCCEEEeCCCCCCHHHHHHHHHcCCcEEEECHH
Confidence 78887877788999998655533222 367899998887666533 888899999999999999776
No 328
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=84.87 E-value=23 Score=35.33 Aligned_cols=75 Identities=20% Similarity=0.313 Sum_probs=40.4
Q ss_pred ccHHHHHHHHHHcCCCEEEEeccc--cccccCCCCCHHHHHHHHhcCCCCeee------eeeeccC-c--HHhHHHHHhc
Q psy11600 18 SNLHSESQNLLDSGADYLHLDVMD--GTFVPNLTFGHPVVKCLRNKIPKAFFE------THMMVQN-P--QQWIEPMADA 86 (277)
Q Consensus 18 ~~l~~~~~~l~~~~~~~~h~DimD--g~fvp~~~~g~~~v~~l~~~~~~~~~d------~Hlmv~~-p--~~~i~~l~~a 86 (277)
..+.+.++.+.+.+..++ =|.| |.++--++.. ++++. +. +|+...| |-.-+.. + .+.++.+.++
T Consensus 178 ~sl~eAl~lm~e~~i~~L--PVVd~~g~liGIIT~~-DIl~~-~~-~p~a~~D~~GrL~Vgaavg~~~~~~~~~~~l~~a 252 (495)
T PTZ00314 178 ISLEEANEVLRESRKGKL--PIVNDNGELVALVSRS-DLKKN-RG-YPNASLDSNGQLLVGAAISTRPEDIERAAALIEA 252 (495)
T ss_pred CCHHHHHHHHHHcCCCeE--EEEcCCCcEEEEEEeh-Hhhhc-cc-CchhhhccCCCEEEEEEECCCHHHHHHHHHHHHC
Confidence 466788888888877773 3454 4443223332 22222 21 3432222 3333332 2 2457778888
Q ss_pred CCCeEEEeccCCC
Q psy11600 87 NVDQYTFHVEPVD 99 (277)
Q Consensus 87 g~d~i~~H~e~~d 99 (277)
|+|.+ |+|...
T Consensus 253 g~d~i--~id~a~ 263 (495)
T PTZ00314 253 GVDVL--VVDSSQ 263 (495)
T ss_pred CCCEE--EEecCC
Confidence 88888 666544
No 329
>COG0284 PyrF Orotidine-5'-phosphate decarboxylase [Nucleotide transport and metabolism]
Probab=84.72 E-value=6.4 Score=35.53 Aligned_cols=92 Identities=18% Similarity=0.164 Sum_probs=65.1
Q ss_pred eccccCcccHHHHHHHHHHcCCCEEEEeccccccccCC-CCCHHHHHHHHhcCCCCeeeeeeeccCcHHh----HHHHHh
Q psy11600 11 SILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNL-TFGHPVVKCLRNKIPKAFFETHMMVQNPQQW----IEPMAD 85 (277)
Q Consensus 11 s~~~~d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~-~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~----i~~l~~ 85 (277)
=|.+.|+.+.++.++.+++.+- + +|..= .+-|.+ .||+.+++++++.. .++-++++..|..+. .+.+.+
T Consensus 14 livaLD~~~~~~~~~~~~~~~~-~--~~~~K-vg~~l~~~~g~~~~~el~~~~--~~VflDlK~~DIpnT~~~~~~~~~~ 87 (240)
T COG0284 14 LIVALDVPTEEEALAFVDKLGP-T--VDFVK-VGKPLVAFFGADILEELKARG--KKVFLDLKLADIPNTVALAAKAAAD 87 (240)
T ss_pred eEEEECCCCHHHHHHHHHHhhc-c--ccEEE-EchHHHHhccHHHHHHHHHhC--CceEEeeecccchHHHHHHHHHhhh
Confidence 4788999999999888877632 2 44333 123333 46999999999863 378888999997664 555566
Q ss_pred cCCCeEEEeccCCCCCHHHHHHHHhh
Q psy11600 86 ANVDQYTFHVEPVDNVPQVIRQIKEA 111 (277)
Q Consensus 86 ag~d~i~~H~e~~d~g~~~i~~i~~~ 111 (277)
.|+|++|+|. -+|.+.++.+++.
T Consensus 88 ~g~d~vtvH~---~~G~~~~~~~~e~ 110 (240)
T COG0284 88 LGADAVTVHA---FGGFDMLRAAKEA 110 (240)
T ss_pred cCCcEEEEeC---cCCHHHHHHHHHH
Confidence 7999999995 3466666666654
No 330
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=84.53 E-value=12 Score=33.63 Aligned_cols=119 Identities=17% Similarity=0.175 Sum_probs=72.4
Q ss_pred CcccHHHHHHHHHHcCCCEEEEeccccccccC-------CCCCH----HHHHHHHhcC---CCCeeeee---eec--cCc
Q psy11600 16 DLSNLHSESQNLLDSGADYLHLDVMDGTFVPN-------LTFGH----PVVKCLRNKI---PKAFFETH---MMV--QNP 76 (277)
Q Consensus 16 d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~-------~~~g~----~~v~~l~~~~---~~~~~d~H---lmv--~~p 76 (277)
|..+..+.++++.+.|++.+|+ -|+.+-+. -.+.+ ..++..++.. +++++-+- +.+ ...
T Consensus 82 ~~~~~~~~v~~~~~~G~~gv~i--ED~~~~k~~g~~~~~~~~~~ee~~~ki~aa~~a~~~~~~~~IiARTDa~~~~~~~~ 159 (243)
T cd00377 82 NALNVARTVRELEEAGAAGIHI--EDQVGPKKCGHHGGKVLVPIEEFVAKIKAARDARDDLPDFVIIARTDALLAGEEGL 159 (243)
T ss_pred CHHHHHHHHHHHHHcCCEEEEE--ecCCCCccccCCCCCeecCHHHHHHHHHHHHHHHhccCCeEEEEEcCchhccCCCH
Confidence 4446777888999999999776 35444221 11121 2333333322 24444443 111 122
Q ss_pred HH---hHHHHHhcCCCeEEEeccCCCCCHHHHHHHHhhCCCcccc---hh---hhhHHHHhcCCCeEEeecC
Q psy11600 77 QQ---WIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQV---LQ---DWIEPMADANVDQYTFHVE 139 (277)
Q Consensus 77 ~~---~i~~l~~ag~d~i~~H~e~~d~g~~~i~~i~~~~~~~~d~---p~---~~i~~~~~~g~d~it~H~E 139 (277)
++ -.+.+.++|||.+.+|.-. ..+.++.+.+....|+.+ |. .-.+.|.+.|+.+++++.-
T Consensus 160 ~eai~Ra~ay~~AGAD~v~v~~~~---~~~~~~~~~~~~~~Pl~~~~~~~~~~~~~~~l~~lG~~~v~~~~~ 228 (243)
T cd00377 160 DEAIERAKAYAEAGADGIFVEGLK---DPEEIRAFAEAPDVPLNVNMTPGGNLLTVAELAELGVRRVSYGLA 228 (243)
T ss_pred HHHHHHHHHHHHcCCCEEEeCCCC---CHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHCCCeEEEEChH
Confidence 23 3666788999999766322 457777887776666644 32 3689999999999999763
No 331
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=84.50 E-value=2.8 Score=38.68 Aligned_cols=72 Identities=17% Similarity=0.140 Sum_probs=42.2
Q ss_pred hhhhHHHHHhhCC-CccEEEeCCCCcCcHHHHH---HccCCCCCcccccCHHHHHHHHHhh-CCCCeEEEeCCCCccCHH
Q psy11600 199 MMPKVKWLRENYP-TLNIEVDGGVGPNTIDECA---KCLTGFGGQKFMQDMMPKVKWLREN-YPTLNIEVDGGVGPNTID 273 (277)
Q Consensus 199 ~l~kI~~l~~~~~-~~~i~vdGgV~~~tv~~~~---~~gpg~ggq~F~~~~~~kI~~l~~~-~~~~~I~VDGGI~~~~~~ 273 (277)
+.+.++.+++..+ ...|+| .++|.+++. ++|++. =.+..-+.+.+++..+. .....|++-||||.+|++
T Consensus 179 i~~av~~~r~~~~~~~kIeV----Ev~slee~~ea~~~gaDi--ImLDn~s~e~l~~av~~~~~~~~leaSGgI~~~ni~ 252 (281)
T PRK06543 179 LTEALRHVRAQLGHTTHVEV----EVDRLDQIEPVLAAGVDT--IMLDNFSLDDLREGVELVDGRAIVEASGNVNLNTVG 252 (281)
T ss_pred HHHHHHHHHHhCCCCCcEEE----EeCCHHHHHHHHhcCCCE--EEECCCCHHHHHHHHHHhCCCeEEEEECCCCHHHHH
Confidence 4556777777765 233443 245665554 466653 11112234444544443 235679999999999998
Q ss_pred Hhh
Q psy11600 274 ECA 276 (277)
Q Consensus 274 ~~~ 276 (277)
+++
T Consensus 253 ~yA 255 (281)
T PRK06543 253 AIA 255 (281)
T ss_pred HHH
Confidence 876
No 332
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=84.42 E-value=15 Score=32.76 Aligned_cols=116 Identities=10% Similarity=0.085 Sum_probs=74.0
Q ss_pred cHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEEeccCC
Q psy11600 19 NLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTFHVEPV 98 (277)
Q Consensus 19 ~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~H~e~~ 98 (277)
+..+-.+.+++.|++++|+==.|..-- .-....+.++++++. .++|+.+-==+.++++ ++.+.+.|++.+.+--...
T Consensus 31 d~~~~a~~~~~~G~~~i~i~dl~~~~~-~~~~~~~~i~~i~~~-~~ipv~~~GGi~s~~~-~~~~l~~Ga~~Viigt~~l 107 (253)
T PRK02083 31 DPVELAKRYNEEGADELVFLDITASSE-GRDTMLDVVERVAEQ-VFIPLTVGGGIRSVED-ARRLLRAGADKVSINSAAV 107 (253)
T ss_pred CHHHHHHHHHHcCCCEEEEEeCCcccc-cCcchHHHHHHHHHh-CCCCEEeeCCCCCHHH-HHHHHHcCCCEEEEChhHh
Confidence 455666677789999999733332211 113566889999886 5666555444555554 4455668999985543332
Q ss_pred CCCHHHHHHHHhhCC---C--cccc-----------------------hhhhhHHHHhcCCCeEEeec
Q psy11600 99 DNVPQVIRQIKEAGM---K--VGQV-----------------------LQDWIEPMADANVDQYTFHV 138 (277)
Q Consensus 99 d~g~~~i~~i~~~~~---~--~~d~-----------------------p~~~i~~~~~~g~d~it~H~ 138 (277)
. .|..++++.+.-. . -+|+ +.++++.+.++|++.+++|.
T Consensus 108 ~-~p~~~~ei~~~~g~~~iv~slD~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~ii~~~ 174 (253)
T PRK02083 108 A-NPELISEAADRFGSQCIVVAIDAKRDPEPGRWEVYTHGGRKPTGLDAVEWAKEVEELGAGEILLTS 174 (253)
T ss_pred h-CcHHHHHHHHHcCCCCEEEEEEeccCCCCCCEEEEEcCCceecCCCHHHHHHHHHHcCCCEEEEcC
Confidence 2 5778888877531 1 1221 46778889999999999874
No 333
>cd00537 MTHFR Methylenetetrahydrofolate reductase (MTHFR). 5,10-Methylenetetrahydrofolate is reduced to 5-methyltetrahydrofolate by methylenetetrahydrofolate reductase, a cytoplasmic, NAD(P)-dependent enzyme. 5-methyltetrahydrofolate is utilized by methionine synthase to convert homocysteine to methionine. The enzymatic mechanism is a ping-pong bi-bi mechanism, in which NAD(P)+ release precedes the binding of methylenetetrahydrofolate and the acceptor is free FAD. The family includes the 5,10-methylenetetrahydrofolate reductase EC:1.7.99.5 from prokaryotes and methylenetetrahydrofolate reductase EC: 1.5.1.20 from eukaryotes. The bacterial enzyme is a homotetramer and NADH is the preferred reductant while the eukaryotic enzyme is a homodimer and NADPH is the preferred reductant. In humans, there are several clinically significant mutations in MTHFR that result in hyperhomocysteinemia, which is a risk factor for the development of cardiovascular disease.
Probab=84.36 E-value=31 Score=31.20 Aligned_cols=155 Identities=13% Similarity=0.095 Sum_probs=92.7
Q ss_pred cccHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccC-----cHHhHHHHHhcCCCeE
Q psy11600 17 LSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQN-----PQQWIEPMADANVDQY 91 (277)
Q Consensus 17 ~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~-----p~~~i~~l~~ag~d~i 91 (277)
...+.+..+.+...+.|. +.|-|+.--....-.....+.+++. .+++.-+|+-..+ ...++..+.++|++-+
T Consensus 14 ~~~l~~~~~~~~~~~~d~--v~Vt~~~~g~~~~~t~~~a~~l~~~-~g~~~i~Hlt~r~~n~~~l~~~L~~~~~~Gi~~i 90 (274)
T cd00537 14 EENLEAAADLLGALDPDF--VSVTDGAGGSTRDMTLLAAARILQE-GGIEPIPHLTCRDRNRIELQSILLGAHALGIRNI 90 (274)
T ss_pred HHHHHHHHHHhhcCCCCE--EEeCCCCCCchhhhHHHHHHHHHHh-cCCCeeeecccCCCCHHHHHHHHHHHHHCCCCeE
Confidence 345555556565555888 8888876633334455667778875 5788999999886 4445777888898855
Q ss_pred EEe-ccCCC---------C----CHHHHHHHHhhC--CCcccc-------h--------hhhhHHHHhcCCCeEEeec--
Q psy11600 92 TFH-VEPVD---------N----VPQVIRQIKEAG--MKVGQV-------L--------QDWIEPMADANVDQYTFHV-- 138 (277)
Q Consensus 92 ~~H-~e~~d---------~----g~~~i~~i~~~~--~~~~d~-------p--------~~~i~~~~~~g~d~it~H~-- 138 (277)
-+= -|... + +.++|+.+++.. ...+-+ | .++++.=.++||+++.=++
T Consensus 91 L~l~GD~~~~~~~~~~~~~~~~~a~~Li~~i~~~~~~~~~igva~yPe~hp~~~~~~~~~~~L~~Ki~aGA~f~iTQ~~f 170 (274)
T cd00537 91 LALRGDPPKGGDQPGAKPVGFVYAVDLVELIRKENGGGFSIGVAAYPEGHPEAPSLEEDIKRLKRKVDAGADFIITQLFF 170 (274)
T ss_pred EEeCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHhcCCCCccccccCCCcCCCCCCHHHHHHHHHHHHHCCCCEEeecccc
Confidence 322 22211 1 678899888753 111111 1 2455555788999776543
Q ss_pred --CCCCChHHHHHHHHHhC--CccceeeCCCCCHHhHHHHHhh
Q psy11600 139 --EPVDNVPQVIRQIKEAG--MKVGLAIKPKTPVDVIAEYIES 177 (277)
Q Consensus 139 --E~~~~~~~~~~~I~~~g--~~~g~~i~p~t~~~~i~~~i~~ 177 (277)
+ ...+..+.+++.| ...=.|+.|-++...+..+...
T Consensus 171 d~~---~~~~~~~~~~~~gi~vPIi~GI~p~~s~~~l~~~~~~ 210 (274)
T cd00537 171 DND---AFLRFVDRCRAAGITVPIIPGIMPLTSYKQAKRFAKL 210 (274)
T ss_pred cHH---HHHHHHHHHHHcCCCCCEEeeccccCCHHHHHHHHHh
Confidence 3 3334445555554 3345566666666555554444
No 334
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=84.33 E-value=14 Score=34.08 Aligned_cols=128 Identities=13% Similarity=0.120 Sum_probs=92.5
Q ss_pred eeccccCcccHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeee-----------------ee
Q psy11600 10 PSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETH-----------------MM 72 (277)
Q Consensus 10 ~s~~~~d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~H-----------------lm 72 (277)
|=.+..|-..--+.+.+..+.|.+++-+|--.-+|=-|+..--++++.-+.. ++.+++= -.
T Consensus 76 PValHLDH~~~~e~i~~ai~~GftSVM~DgS~lp~eeNi~~T~~vv~~Ah~~--gvsVEaElG~vgg~e~~~~~~~~~~~ 153 (284)
T PRK12857 76 PVALHLDHGTDFEQVMKCIRNGFTSVMIDGSKLPLEENIALTKKVVEIAHAV--GVSVEAELGKIGGTEDDITVDEREAA 153 (284)
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCeEEEeCCCCCHHHHHHHHHHHHHHHHHc--CCEEEEEeeecCCccCCCCcccchhh
Confidence 4456667765556677777889999999877777777877777777776643 3333221 12
Q ss_pred ccCcHHhHHHHHhcCCCeEEEeccCCCC--------CHHHHHHHHhhCCCcccc------hhhhhHHHHhcCCCeEEeec
Q psy11600 73 VQNPQQWIEPMADANVDQYTFHVEPVDN--------VPQVIRQIKEAGMKVGQV------LQDWIEPMADANVDQYTFHV 138 (277)
Q Consensus 73 v~~p~~~i~~l~~ag~d~i~~H~e~~d~--------g~~~i~~i~~~~~~~~d~------p~~~i~~~~~~g~d~it~H~ 138 (277)
..+|++-.+.+.+.|+|.+.+=+-..-| -++.++.|++....|+-+ |++.+...+++|..-|-+..
T Consensus 154 ~T~pe~a~~Fv~~TgvD~LAvaiGt~HG~y~~~p~Ld~~~L~~i~~~~~vPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~T 233 (284)
T PRK12857 154 MTDPEEARRFVEETGVDALAIAIGTAHGPYKGEPKLDFDRLAKIKELVNIPIVLHGSSGVPDEAIRKAISLGVRKVNIDT 233 (284)
T ss_pred cCCHHHHHHHHHHHCCCEEeeccCccccccCCCCcCCHHHHHHHHHHhCCCEEEeCCCCCCHHHHHHHHHcCCeEEEeCc
Confidence 4578877777778899999766544332 678999999987666532 89999999999999999987
Q ss_pred C
Q psy11600 139 E 139 (277)
Q Consensus 139 E 139 (277)
|
T Consensus 234 ~ 234 (284)
T PRK12857 234 N 234 (284)
T ss_pred H
Confidence 6
No 335
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=84.29 E-value=6.4 Score=41.21 Aligned_cols=114 Identities=13% Similarity=0.198 Sum_probs=70.7
Q ss_pred HHHHHHHHHcCCCEEEEeccc----------------------cccccCCCCCHHHHHHHHhcCC-CCeeeeeeeccC--
Q psy11600 21 HSESQNLLDSGADYLHLDVMD----------------------GTFVPNLTFGHPVVKCLRNKIP-KAFFETHMMVQN-- 75 (277)
Q Consensus 21 ~~~~~~l~~~~~~~~h~DimD----------------------g~fvp~~~~g~~~v~~l~~~~~-~~~~d~Hlmv~~-- 75 (277)
.+..+++.++|.|. |+|-= |.+-..+.|..++++.+|+.++ ++++-+-+-..+
T Consensus 554 ~~aA~~a~~aGfDg--veih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~~~~~~~v~~ri~~~~~~ 631 (765)
T PRK08255 554 VAAARRAAEAGFDW--LELHCAHGYLLSSFISPLTNQRTDEYGGSLENRLRYPLEVFRAVRAVWPAEKPMSVRISAHDWV 631 (765)
T ss_pred HHHHHHHHHcCCCE--EEEecccchHHHHhcCCCCCCCCCCCCCCHHHHhHHHHHHHHHHHHhcCCCCeeEEEEcccccc
Confidence 34556678889999 55532 2222335566799999999874 567776655421
Q ss_pred -----cH---HhHHHHHhcCCCeEEEeccCC------C----CCHHHHHHHHhhCCCcccc------hhhhhHHHHhcCC
Q psy11600 76 -----PQ---QWIEPMADANVDQYTFHVEPV------D----NVPQVIRQIKEAGMKVGQV------LQDWIEPMADANV 131 (277)
Q Consensus 76 -----p~---~~i~~l~~ag~d~i~~H~e~~------d----~g~~~i~~i~~~~~~~~d~------p~~~i~~~~~~g~ 131 (277)
++ +.++.+.++|+|++++|.-.. . ......+.+|+..+.|+-. |+.--+.+.+-++
T Consensus 632 ~~g~~~~~~~~~~~~l~~~g~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~ik~~~~~pv~~~G~i~~~~~a~~~l~~g~~ 711 (765)
T PRK08255 632 EGGNTPDDAVEIARAFKAAGADLIDVSSGQVSKDEKPVYGRMYQTPFADRIRNEAGIATIAVGAISEADHVNSIIAAGRA 711 (765)
T ss_pred CCCCCHHHHHHHHHHHHhcCCcEEEeCCCCCCcCCCCCcCccccHHHHHHHHHHcCCEEEEeCCCCCHHHHHHHHHcCCc
Confidence 22 346778889999998883211 0 1234566777776655422 5554444555558
Q ss_pred CeEEe
Q psy11600 132 DQYTF 136 (277)
Q Consensus 132 d~it~ 136 (277)
|.|.+
T Consensus 712 D~v~~ 716 (765)
T PRK08255 712 DLCAL 716 (765)
T ss_pred ceeeE
Confidence 88887
No 336
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=84.24 E-value=2.3 Score=39.34 Aligned_cols=74 Identities=14% Similarity=0.100 Sum_probs=42.9
Q ss_pred hhhhHHHHHhhCC---CccEEEeCCCCcCcHHHHHHccCCCCCcccccCHHHHHHHHHhhC-CCCeEEEeCCCCccCHHH
Q psy11600 199 MMPKVKWLRENYP---TLNIEVDGGVGPNTIDECAKCLTGFGGQKFMQDMMPKVKWLRENY-PTLNIEVDGGVGPNTIDE 274 (277)
Q Consensus 199 ~l~kI~~l~~~~~---~~~i~vdGgV~~~tv~~~~~~gpg~ggq~F~~~~~~kI~~l~~~~-~~~~I~VDGGI~~~~~~~ 274 (277)
..+.++.+++..+ ++.++++ +++-+.+..++|++. =.+..-+.+.+++..+.. ....+++-||||.+|++.
T Consensus 180 i~~ai~~~r~~~~~~~kIeVEv~---tleea~ea~~~gaDi--I~LDn~s~e~l~~av~~~~~~~~leaSGGI~~~ni~~ 254 (281)
T PRK06106 180 VREAIRRARAGVGHLVKIEVEVD---TLDQLEEALELGVDA--VLLDNMTPDTLREAVAIVAGRAITEASGRITPETAPA 254 (281)
T ss_pred HHHHHHHHHHhCCCCCcEEEEeC---CHHHHHHHHHcCCCE--EEeCCCCHHHHHHHHHHhCCCceEEEECCCCHHHHHH
Confidence 3455677777665 3455543 333444445566663 111122345555554432 345699999999999998
Q ss_pred hhC
Q psy11600 275 CAK 277 (277)
Q Consensus 275 ~~~ 277 (277)
+++
T Consensus 255 yA~ 257 (281)
T PRK06106 255 IAA 257 (281)
T ss_pred HHh
Confidence 763
No 337
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=84.21 E-value=35 Score=31.62 Aligned_cols=211 Identities=12% Similarity=0.104 Sum_probs=106.7
Q ss_pred ccccCcccHHHHHHHHHHcCCCEEEEecccccc--ccCCCCCHHHHHHHHhcCC-CCeeeeeeeccCcHHhHHHHHhcCC
Q psy11600 12 ILNSDLSNLHSESQNLLDSGADYLHLDVMDGTF--VPNLTFGHPVVKCLRNKIP-KAFFETHMMVQNPQQWIEPMADANV 88 (277)
Q Consensus 12 ~~~~d~~~l~~~~~~l~~~~~~~~h~DimDg~f--vp~~~~g~~~v~~l~~~~~-~~~~d~Hlmv~~p~~~i~~l~~ag~ 88 (277)
.=+.|+..+..-++..++.+...+ +.+-.|+. ...+.+-...++++.+... ++|+-+||==. -.+.+.+..++|.
T Consensus 23 fN~~n~e~~~avi~aAe~~~sPvI-lq~s~~~~~~~~~~~~~~~~~~~~a~~~~~~vPV~lHLDH~-~~~~i~~ai~~Gf 100 (293)
T PRK07315 23 FNTNNLEWTQAILRAAEAKKAPVL-IQTSMGAAKYMGGYKVCKNLIENLVESMGITVPVAIHLDHG-HYEDALECIEVGY 100 (293)
T ss_pred EEECCHHHHHHHHHHHHHHCCCEE-EEcCccHHhhcCcHHHHHHHHHHHHHHcCCCCcEEEECCCC-CHHHHHHHHHcCC
Confidence 333445555566777777777753 45545433 1111111344556665521 67999999877 4557888889999
Q ss_pred CeEEEeccCCCC-CHHHHHHHHhhCCCcccchhhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCCcc-ceeeCCCC
Q psy11600 89 DQYTFHVEPVDN-VPQVIRQIKEAGMKVGQVLQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKV-GLAIKPKT 166 (277)
Q Consensus 89 d~i~~H~e~~d~-g~~~i~~i~~~~~~~~d~p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~~-g~~i~p~t 166 (277)
+++ .+|.... -.+-++..|+ ..+.....|+ +|=.| +.. + .|..- -.+...-|
T Consensus 101 tSV--m~d~S~l~~eEni~~t~~-----------v~~~a~~~gv---~vE~E----lG~----i--~g~ed~~~g~s~~t 154 (293)
T PRK07315 101 TSI--MFDGSHLPVEENLKLAKE-----------VVEKAHAKGI---SVEAE----VGT----I--GGEEDGIIGKGELA 154 (293)
T ss_pred CEE--EEcCCCCCHHHHHHHHHH-----------HHHHHHHcCC---EEEEe----cCc----c--cCcCccccCccCCC
Confidence 999 7776443 1112222211 1111222222 11111 000 0 00000 01111124
Q ss_pred CHHhHHHHH-hhcCceEEEEecCC---CCC-chhhhhhhhhHHHHHhhCCCccEEEeCC--CCcCcHHHHHHccCCC---
Q psy11600 167 PVDVIAEYI-ESADLVLIMTVEPG---FGG-QKFMQDMMPKVKWLRENYPTLNIEVDGG--VGPNTIDECAKCLTGF--- 236 (277)
Q Consensus 167 ~~~~i~~~i-~~~d~vl~mav~Pg---t~g-q~~~~~~l~kI~~l~~~~~~~~i~vdGg--V~~~tv~~~~~~gpg~--- 236 (277)
.++....+. ..+|++.+ ++-|- +++ .+ .--++.++++++..+++-+++-|| ++.+.+.++.+.|..-
T Consensus 155 ~peea~~f~~tgvD~LAv-~iG~vHG~y~t~~k--~l~~e~L~~i~~~~~~iPlVlhGGSGi~~e~~~~~i~~Gi~KiNv 231 (293)
T PRK07315 155 PIEDAKAMVETGIDFLAA-GIGNIHGPYPENWE--GLDLDHLEKLTEAVPGFPIVLHGGSGIPDDQIQEAIKLGVAKVNV 231 (293)
T ss_pred CHHHHHHHHHcCCCEEee-ccccccccCCCCCC--cCCHHHHHHHHHhccCCCEEEECCCCCCHHHHHHHHHcCCCEEEE
Confidence 454444443 23455332 21121 211 01 112445666666555577899999 9999999999998874
Q ss_pred CCcccccCHHHHHHHHHh
Q psy11600 237 GGQKFMQDMMPKVKWLRE 254 (277)
Q Consensus 237 ggq~F~~~~~~kI~~l~~ 254 (277)
++..+. +..+.++++.+
T Consensus 232 ~T~i~~-~~~~~~~~~~~ 248 (293)
T PRK07315 232 NTECQI-AFANATRKFAR 248 (293)
T ss_pred ccHHHH-HHHHHHHHHHH
Confidence 444333 56666666554
No 338
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=84.10 E-value=6.2 Score=34.75 Aligned_cols=68 Identities=9% Similarity=0.043 Sum_probs=52.8
Q ss_pred HHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEE
Q psy11600 20 LHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYT 92 (277)
Q Consensus 20 l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~ 92 (277)
........+..|++++|++--+|..- .-.++.++.+|+. +++|+-+---+.++++ ++.+.++|+|.+.
T Consensus 136 ~~~~a~aa~~~G~~~i~Le~~sGa~~---~v~~e~i~~Vk~~-~~~Pv~vGGGIrs~e~-a~~l~~~GAD~VV 203 (205)
T TIGR01769 136 AAAYCLAAKYFGMKWVYLEAGSGASY---PVNPETISLVKKA-SGIPLIVGGGIRSPEI-AYEIVLAGADAIV 203 (205)
T ss_pred HHHHHHHHHHcCCCEEEEEcCCCCCC---CCCHHHHHHHHHh-hCCCEEEeCCCCCHHH-HHHHHHcCCCEEE
Confidence 34445556778999999988888642 2458999999985 7899999999988875 4567778999874
No 339
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=84.08 E-value=6.4 Score=35.49 Aligned_cols=103 Identities=18% Similarity=0.289 Sum_probs=67.5
Q ss_pred EeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEEeccCC---CC---CHHHHHHHHh
Q psy11600 37 LDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTFHVEPV---DN---VPQVIRQIKE 110 (277)
Q Consensus 37 ~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~H~e~~---d~---g~~~i~~i~~ 110 (277)
+||-||..|+...|- .+| -+.+|-+..+.+.+.|+|-+.| +|+. ++ -.++|+..-+
T Consensus 10 LDVk~GrVVKGv~F~-----~lr------------d~GDpVelA~~Y~e~GADElvF-lDItAs~~gr~~~~~vv~r~A~ 71 (256)
T COG0107 10 LDVKDGRVVKGVNFK-----NLR------------DAGDPVELAKRYNEEGADELVF-LDITASSEGRETMLDVVERVAE 71 (256)
T ss_pred EEccCCEEEeccccc-----chh------------hcCChHHHHHHHHHcCCCeEEE-EecccccccchhHHHHHHHHHh
Confidence 677899999876651 223 3579999999999999998764 4543 22 3344444444
Q ss_pred hCCCcccc-----hhhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCCc
Q psy11600 111 AGMKVGQV-----LQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMK 157 (277)
Q Consensus 111 ~~~~~~d~-----p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~ 157 (277)
....|+-+ -.+-++.+..+|||-||+..-+..+++-+.+.-+..|.+
T Consensus 72 ~vfiPltVGGGI~s~eD~~~ll~aGADKVSINsaAv~~p~lI~~~a~~FGsQ 123 (256)
T COG0107 72 QVFIPLTVGGGIRSVEDARKLLRAGADKVSINSAAVKDPELITEAADRFGSQ 123 (256)
T ss_pred hceeeeEecCCcCCHHHHHHHHHcCCCeeeeChhHhcChHHHHHHHHHhCCc
Confidence 45556655 345567888999999999876444444333444445544
No 340
>PLN02591 tryptophan synthase
Probab=83.99 E-value=27 Score=31.62 Aligned_cols=107 Identities=21% Similarity=0.281 Sum_probs=69.0
Q ss_pred HHHHHHHHHhCCccceeeCCCCCHHhHHHH---HhhcCceEEEEecCCCCCchhhhhhhhhHHHHHhhCCCccEEEe-CC
Q psy11600 145 PQVIRQIKEAGMKVGLAIKPKTPVDVIAEY---IESADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVD-GG 220 (277)
Q Consensus 145 ~~~~~~I~~~g~~~g~~i~p~t~~~~i~~~---i~~~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~~~~~i~vd-Gg 220 (277)
++..+.+++.| ..--|-|..|+++..++ ++..++-++..+.|.|+ -++++.+.+..+.+-..|- .|
T Consensus 96 ~~F~~~~~~aG--v~GviipDLP~ee~~~~~~~~~~~gl~~I~lv~Ptt~--------~~ri~~ia~~~~gFIY~Vs~~G 165 (250)
T PLN02591 96 DKFMATIKEAG--VHGLVVPDLPLEETEALRAEAAKNGIELVLLTTPTTP--------TERMKAIAEASEGFVYLVSSTG 165 (250)
T ss_pred HHHHHHHHHcC--CCEEEeCCCCHHHHHHHHHHHHHcCCeEEEEeCCCCC--------HHHHHHHHHhCCCcEEEeeCCC
Confidence 34566666666 33456688998766555 46778888888889886 2456677666666544431 23
Q ss_pred CCcCcHHHHHHccCCCCC-cccccCHHHHHHHHHhhCCCCeEEEeCCCC-ccCHHHhh
Q psy11600 221 VGPNTIDECAKCLTGFGG-QKFMQDMMPKVKWLRENYPTLNIEVDGGVG-PNTIDECA 276 (277)
Q Consensus 221 V~~~tv~~~~~~gpg~gg-q~F~~~~~~kI~~l~~~~~~~~I~VDGGI~-~~~~~~~~ 276 (277)
++ |. ..+.++..+.++++|+. .+.-+.|--||+ +++++++.
T Consensus 166 vT--------------G~~~~~~~~~~~~i~~vk~~-~~~Pv~vGFGI~~~e~v~~~~ 208 (250)
T PLN02591 166 VT--------------GARASVSGRVESLLQELKEV-TDKPVAVGFGISKPEHAKQIA 208 (250)
T ss_pred Cc--------------CCCcCCchhHHHHHHHHHhc-CCCceEEeCCCCCHHHHHHHH
Confidence 32 22 23334555568888875 467788988999 78887764
No 341
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=83.96 E-value=11 Score=33.35 Aligned_cols=136 Identities=19% Similarity=0.217 Sum_probs=69.7
Q ss_pred hHHHHhcCCCeEEeecCCCC----ChHHHHHHHHHhCCccceeeCCCCCHHhHHHHHhhc--CceEEEEecCCCCCchhh
Q psy11600 123 IEPMADANVDQYTFHVEPVD----NVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESA--DLVLIMTVEPGFGGQKFM 196 (277)
Q Consensus 123 i~~~~~~g~d~it~H~E~~~----~~~~~~~~I~~~g~~~g~~i~p~t~~~~i~~~i~~~--d~vl~mav~Pgt~gq~~~ 196 (277)
+....++|||++-|=.++-. ++....++........-+|+-...+++.+...+... |.+.+..-++
T Consensus 15 a~~a~~~gad~iG~If~~~SpR~Vs~~~a~~i~~~v~~~~~VgVf~n~~~~~i~~i~~~~~ld~VQlHG~e~-------- 86 (208)
T COG0135 15 AKAAAKAGADYIGFIFVPKSPRYVSPEQAREIASAVPKVKVVGVFVNESIEEILEIAEELGLDAVQLHGDED-------- 86 (208)
T ss_pred HHHHHHcCCCEEEEEEcCCCCCcCCHHHHHHHHHhCCCCCEEEEECCCCHHHHHHHHHhcCCCEEEECCCCC--------
Confidence 45678899999988765311 122333333333212357777777888888887765 5555443222
Q ss_pred hhhhhhHHHHHhhCCCccEE----EeCCCCcCcHHH--------HHHc----cCCCCCcccccCHHHHHHHHHhhCCCCe
Q psy11600 197 QDMMPKVKWLRENYPTLNIE----VDGGVGPNTIDE--------CAKC----LTGFGGQKFMQDMMPKVKWLRENYPTLN 260 (277)
Q Consensus 197 ~~~l~kI~~l~~~~~~~~i~----vdGgV~~~tv~~--------~~~~----gpg~ggq~F~~~~~~kI~~l~~~~~~~~ 260 (277)
.+.+++++..+ ++.++ +..+-..+.... +..+ .+|..|+.|.=+.+.+. .....
T Consensus 87 ---~~~~~~l~~~~-~~~v~kai~v~~~~~~~~~~~~~~~~d~~LlDa~~~~~~GGtG~~fDW~~l~~~------~~~~~ 156 (208)
T COG0135 87 ---PEYIDQLKEEL-GVPVIKAISVSEEGDLELAAREEGPVDAILLDAKVPGLPGGTGQTFDWNLLPKL------RLSKP 156 (208)
T ss_pred ---HHHHHHHHhhc-CCceEEEEEeCCccchhhhhhccCCccEEEEcCCCCCCCCCCCcEECHHHhccc------cccCC
Confidence 23344444432 11111 111000000000 1112 14556788875544333 22334
Q ss_pred EEEeCCCCccCHHHhh
Q psy11600 261 IEVDGGVGPNTIDECA 276 (277)
Q Consensus 261 I~VDGGI~~~~~~~~~ 276 (277)
+..-||+|++|+.+..
T Consensus 157 ~~LAGGL~p~NV~~ai 172 (208)
T COG0135 157 VMLAGGLNPDNVAEAI 172 (208)
T ss_pred EEEECCCCHHHHHHHH
Confidence 8889999999998765
No 342
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=83.94 E-value=24 Score=31.79 Aligned_cols=57 Identities=18% Similarity=0.103 Sum_probs=29.6
Q ss_pred HhHHHHHhcCCCeEEEeccCCC-C------------CHHHHHHHHhhCCCcccc---hhhhhHHHHhcCCCeE
Q psy11600 78 QWIEPMADANVDQYTFHVEPVD-N------------VPQVIRQIKEAGMKVGQV---LQDWIEPMADANVDQY 134 (277)
Q Consensus 78 ~~i~~l~~ag~d~i~~H~e~~d-~------------g~~~i~~i~~~~~~~~d~---p~~~i~~~~~~g~d~i 134 (277)
+.+..+.+.|||+|-+=.+... + -.++|+.+++.++.++.+ -.+.++.-.++|+++|
T Consensus 28 ~~a~~~~~~GAdiIDvG~~st~p~~~~~~~~~E~~rl~~~v~~l~~~~~~piSIDT~~~~v~~aaL~~g~~iI 100 (258)
T cd00423 28 EHARRMVEEGADIIDIGGESTRPGAEPVSVEEELERVIPVLRALAGEPDVPISVDTFNAEVAEAALKAGADII 100 (258)
T ss_pred HHHHHHHHCCCCEEEECCCcCCCCCCcCCHHHHHHHHHHHHHHHHhcCCCeEEEeCCcHHHHHHHHHhCCCEE
Confidence 3466778899999944344331 1 224555555544444332 2334444445555544
No 343
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=83.91 E-value=11 Score=35.70 Aligned_cols=114 Identities=16% Similarity=0.156 Sum_probs=67.0
Q ss_pred HHHHHHHHHcCCCEEEEeccccc------c-cc--C-------------CCCCHHHHHHHHhcCC-CCeeeeeeecc---
Q psy11600 21 HSESQNLLDSGADYLHLDVMDGT------F-VP--N-------------LTFGHPVVKCLRNKIP-KAFFETHMMVQ--- 74 (277)
Q Consensus 21 ~~~~~~l~~~~~~~~h~DimDg~------f-vp--~-------------~~~g~~~v~~l~~~~~-~~~~d~Hlmv~--- 74 (277)
.+..+++.++|.|. |+|.=++ | .| | ..|-.++++.+|+.++ +.++-+-|-..
T Consensus 140 ~~aA~~a~~aGfDg--Veih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~aIR~~vG~d~~v~iRi~~~D~~ 217 (353)
T cd02930 140 ARCAALAREAGYDG--VEIMGSEGYLINQFLAPRTNKRTDEWGGSFENRMRFPVEIVRAVRAAVGEDFIIIYRLSMLDLV 217 (353)
T ss_pred HHHHHHHHHcCCCE--EEEecccchHHHHhcCCccCCCcCccCCCHHHHhHHHHHHHHHHHHHcCCCceEEEEecccccC
Confidence 34555678889999 6664321 2 12 2 4566789999999864 44554333211
Q ss_pred ----CcH---HhHHHHHhcCCCeEEE----eccCC--C---C----CHHHHHHHHhhCCCcccc------hhhhhHHHHh
Q psy11600 75 ----NPQ---QWIEPMADANVDQYTF----HVEPV--D---N----VPQVIRQIKEAGMKVGQV------LQDWIEPMAD 128 (277)
Q Consensus 75 ----~p~---~~i~~l~~ag~d~i~~----H~e~~--d---~----g~~~i~~i~~~~~~~~d~------p~~~i~~~~~ 128 (277)
+++ +.++.+.++|+|++++ |-+.. . . -....+++|+.+..|+-. |+..-+.+.+
T Consensus 218 ~~g~~~~e~~~i~~~Le~~G~d~i~vs~g~~e~~~~~~~~~~~~~~~~~~~~~ik~~v~iPVi~~G~i~~~~~a~~~i~~ 297 (353)
T cd02930 218 EGGSTWEEVVALAKALEAAGADILNTGIGWHEARVPTIATSVPRGAFAWATAKLKRAVDIPVIASNRINTPEVAERLLAD 297 (353)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEeCCCcCCCCCccccccCCchhhHHHHHHHHHhCCCCEEEcCCCCCHHHHHHHHHC
Confidence 223 3577888899999966 21111 0 0 133467788887766533 5555555555
Q ss_pred cCCCeEEe
Q psy11600 129 ANVDQYTF 136 (277)
Q Consensus 129 ~g~d~it~ 136 (277)
-++|.|.+
T Consensus 298 g~~D~V~~ 305 (353)
T cd02930 298 GDADMVSM 305 (353)
T ss_pred CCCChhHh
Confidence 55887766
No 344
>PRK14340 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=83.86 E-value=6.6 Score=38.50 Aligned_cols=92 Identities=11% Similarity=0.275 Sum_probs=56.3
Q ss_pred ccCcccHHHHHHHHHHcCCCEEEEeccccccc--cCCCCC---HHHHHHHHhcCCCCeeeeeeeccCc----HHhHHHHH
Q psy11600 14 NSDLSNLHSESQNLLDSGADYLHLDVMDGTFV--PNLTFG---HPVVKCLRNKIPKAFFETHMMVQNP----QQWIEPMA 84 (277)
Q Consensus 14 ~~d~~~l~~~~~~l~~~~~~~~h~DimDg~fv--p~~~~g---~~~v~~l~~~~~~~~~d~Hlmv~~p----~~~i~~l~ 84 (277)
+-+..++-+|++.+.+.|+..+.+ .|.++. .+-.++ .+.++.+.+..+ .+.+.+++.+| .+.++.+.
T Consensus 177 sr~~e~Vv~Ei~~l~~~G~~ei~l--~~~~~~~y~d~~~~~~l~~Ll~~l~~~~~--~~rir~~~~~p~~l~~ell~~~~ 252 (445)
T PRK14340 177 SHPFASVLDEVRALAEAGYREITL--LGQNVNSYSDPEAGADFAGLLDAVSRAAP--EMRIRFTTSHPKDISESLVRTIA 252 (445)
T ss_pred CCCHHHHHHHHHHHHHCCCeEEEE--eecccchhhccCCCchHHHHHHHHhhcCC--CcEEEEccCChhhcCHHHHHHHH
Confidence 445567778999999989887554 322111 110111 356666665322 34677777776 34577777
Q ss_pred hc--CCCeEEEeccCCCCCHHHHHHHHhh
Q psy11600 85 DA--NVDQYTFHVEPVDNVPQVIRQIKEA 111 (277)
Q Consensus 85 ~a--g~d~i~~H~e~~d~g~~~i~~i~~~ 111 (277)
++ |+.++ |+-.-.|...+++.+++.
T Consensus 253 ~~~~g~~~l--~iglQSgsd~vLk~m~R~ 279 (445)
T PRK14340 253 ARPNICNHI--HLPVQSGSSRMLRRMNRG 279 (445)
T ss_pred hCCCCCCeE--EECCCcCCHHHHHhcCCC
Confidence 75 68888 555555667888887664
No 345
>cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases. FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase.
Probab=83.82 E-value=7.2 Score=34.34 Aligned_cols=89 Identities=20% Similarity=0.087 Sum_probs=57.7
Q ss_pred ccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEEeccCCCC----CHHHHHHHHhhCCC---c--
Q psy11600 45 VPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTFHVEPVDN----VPQVIRQIKEAGMK---V-- 115 (277)
Q Consensus 45 vp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~H~e~~d~----g~~~i~~i~~~~~~---~-- 115 (277)
+|.-.-|.+.++.|++. ++++-+-. |-++. +.....++|+++++..+.-++. |..+++++.+.... +
T Consensus 84 IP~T~~gl~ai~~L~~~--gi~v~~T~-V~s~~-Qa~~Aa~AGA~yvsP~vgR~~~~g~dg~~~i~~i~~~~~~~~~~tk 159 (211)
T cd00956 84 IPVTEDGLKAIKKLSEE--GIKTNVTA-IFSAA-QALLAAKAGATYVSPFVGRIDDLGGDGMELIREIRTIFDNYGFDTK 159 (211)
T ss_pred EcCcHhHHHHHHHHHHc--CCceeeEE-ecCHH-HHHHHHHcCCCEEEEecChHhhcCCCHHHHHHHHHHHHHHcCCCce
Confidence 45545688888888874 55554433 33444 4445678999999999876432 66777777665321 1
Q ss_pred ccc-----hhhhhHHHHhcCCCeEEeec
Q psy11600 116 GQV-----LQDWIEPMADANVDQYTFHV 138 (277)
Q Consensus 116 ~d~-----p~~~i~~~~~~g~d~it~H~ 138 (277)
+.. |.++.. ..++|||.+|+.+
T Consensus 160 il~As~r~~~ei~~-a~~~Gad~vTv~~ 186 (211)
T cd00956 160 ILAASIRNPQHVIE-AALAGADAITLPP 186 (211)
T ss_pred EEecccCCHHHHHH-HHHcCCCEEEeCH
Confidence 111 666665 6789999999854
No 346
>PF00697 PRAI: N-(5'phosphoribosyl)anthranilate (PRA) isomerase; InterPro: IPR001240 Indole-3-glycerol phosphate synthase (IGPS) (see IPR001468 from INTERPRO) catalyzes the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyzes N-(5-phosphoribosyl)anthranilate isomerase (PRAI) activity, the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (GATase) N-terminal domain (see IPR000991 from INTERPRO). Phosphoribosylanthranilate isomerase (PRAI) is monomeric and labile in most mesophilic microorganisms, but dimeric and stable in the hyperthermophile Thermotoga maritima (tPRAI) []. The comparison to the known 2.0 A structure of PRAI from Escherichia coli (ePRAI) shows that tPRAI has the complete TIM- or (beta alp ha)8-barrel fold, whereas helix alpha5 in ePRAI is replaced by a loop. The subunits of tPRAI associate via the N-terminal faces of their central beta-barrels. Two long, symmetry-related loops that protrude reciprocally into cavities of the other subunit provide for multiple hydrophobic interactions. Moreover, the side chains of the N-terminal methionines and the C-terminal leucines of both subunits are immobilized in a hydrophobic cluster, and the number of salt bridges is increased in tPRAI. These features appear to be mainly responsible for the high thermostability of tPRAI []. ; GO: 0004640 phosphoribosylanthranilate isomerase activity, 0006568 tryptophan metabolic process; PDB: 1V5X_A 1PII_A 1JCM_P 2KZH_A 1LBM_A 1DL3_A 1NSJ_A.
Probab=83.56 E-value=3.2 Score=35.96 Aligned_cols=137 Identities=20% Similarity=0.267 Sum_probs=65.6
Q ss_pred hHHHHhcCCCeEEeecCCCC----ChHHHHHHHHHhCCccceeeCCCCCHHhHHHHHhhc--CceEEEEecCCCCCchhh
Q psy11600 123 IEPMADANVDQYTFHVEPVD----NVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESA--DLVLIMTVEPGFGGQKFM 196 (277)
Q Consensus 123 i~~~~~~g~d~it~H~E~~~----~~~~~~~~I~~~g~~~g~~i~p~t~~~~i~~~i~~~--d~vl~mav~Pgt~gq~~~ 196 (277)
+....++|+|++.|-..|.. ++....++.+... ..-+|+-...+++.+...+... |++.+..-.+
T Consensus 12 a~~~~~~g~d~~Gfi~~~~S~R~v~~~~a~~l~~~~~-~~~VgVf~~~~~~~I~~~~~~~~ld~vQLHG~e~-------- 82 (197)
T PF00697_consen 12 ARLAAELGADYLGFIFYPKSPRYVSPDQARELVSAVP-PKIVGVFVNQSPEEILEIVEELGLDVVQLHGDES-------- 82 (197)
T ss_dssp HHHHHHHTSSEEEEE--TTCTTB--HHHHHHHHCCSS-SSEEEEESSS-HHHHHHHHHHCTESEEEE-SGG---------
T ss_pred HHHHHHcCCCEEeeecCCCCCCccCHHHHHHHHHhcC-CCEEEEEcCCCHHHHHHHHHHcCCCEEEECCCCC--------
Confidence 45678899999999877532 1112222222222 2367777788888888888765 7766554332
Q ss_pred hhhhhhHHHHHhhCCCc-cEEEeCCCCcCcHHHHHH----------ccCCCCCcccccCHHHHHHHHHhhCCCCeEEEeC
Q psy11600 197 QDMMPKVKWLRENYPTL-NIEVDGGVGPNTIDECAK----------CLTGFGGQKFMQDMMPKVKWLRENYPTLNIEVDG 265 (277)
Q Consensus 197 ~~~l~kI~~l~~~~~~~-~i~vdGgV~~~tv~~~~~----------~gpg~ggq~F~~~~~~kI~~l~~~~~~~~I~VDG 265 (277)
.+ .++.++...+-+ .+.+...+. ....+.. .+.|..|..|.-+.+.++.+... ...+.+-|
T Consensus 83 ~e---~~~~l~~~~~vi~~~~v~~~~~--~~~~~~~~~~~d~~LlD~~~GgtG~~~dw~~~~~~~~~~~---~~p~iLAG 154 (197)
T PF00697_consen 83 PE---YIKLLRAGLPVIKAIHVDKDID--LLDYLERYESVDYFLLDSGSGGTGKTFDWSLLKKIVESYS---PKPVILAG 154 (197)
T ss_dssp HH---HHHHHHTTSEEEEEEEESSCHS--CCHHCHCSTT-SEEEEESSSTSSSS---GGGGCCCHHT-G---TSTEEEES
T ss_pred HH---HHHHhhcCceEEEEEEeCCccc--hHHHHHhcccccEEeEccCCCcCCcccCHHHhhhhhhhcc---cCcEEEEc
Confidence 11 222232111111 111211111 1111111 13444577887766655554322 45689999
Q ss_pred CCCccCHHHhh
Q psy11600 266 GVGPNTIDECA 276 (277)
Q Consensus 266 GI~~~~~~~~~ 276 (277)
|+|++|++++.
T Consensus 155 Gl~p~NV~~ai 165 (197)
T PF00697_consen 155 GLNPENVREAI 165 (197)
T ss_dssp S--TTTHHHHH
T ss_pred CCChHHHHHHH
Confidence 99999998764
No 347
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=83.55 E-value=38 Score=31.79 Aligned_cols=139 Identities=12% Similarity=0.172 Sum_probs=68.9
Q ss_pred hHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCCccceeeCCCCCH---HhHHHHHhhcCceEEEEecCCCCCchhhhhh
Q psy11600 123 IEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPV---DVIAEYIESADLVLIMTVEPGFGGQKFMQDM 199 (277)
Q Consensus 123 i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~i~p~t~~---~~i~~~i~~~d~vl~mav~Pgt~gq~~~~~~ 199 (277)
...++++|.=-+ +|.+ .++++..+.+++......++...++.. +.+...++ .+. -++.++...+. + +..
T Consensus 51 a~ava~~GglGv-i~~~--~~~~~~~~~i~~vk~~l~v~~~~~~~~~~~~~~~~l~e-agv-~~I~vd~~~G~-~--~~~ 122 (325)
T cd00381 51 AIAMARLGGIGV-IHRN--MSIEEQAEEVRKVKGRLLVGAAVGTREDDKERAEALVE-AGV-DVIVIDSAHGH-S--VYV 122 (325)
T ss_pred HHHHHHCCCEEE-EeCC--CCHHHHHHHHHHhccCceEEEecCCChhHHHHHHHHHh-cCC-CEEEEECCCCC-c--HHH
Confidence 345566665322 2332 144555556665533334444444432 22333333 332 22334443321 1 345
Q ss_pred hhhHHHHHhhCCCccEEEeCCCCcCcHHHHHHccCCC---C---Cccc--------ccCHHHHHHHHHhhC--CCCeEEE
Q psy11600 200 MPKVKWLRENYPTLNIEVDGGVGPNTIDECAKCLTGF---G---GQKF--------MQDMMPKVKWLRENY--PTLNIEV 263 (277)
Q Consensus 200 l~kI~~l~~~~~~~~i~vdGgV~~~tv~~~~~~gpg~---g---gq~F--------~~~~~~kI~~l~~~~--~~~~I~V 263 (277)
.+.++++++..|++.+.+-...+.+.+..+.++|+++ | |... ....+.-+.++.+.. .+..+-.
T Consensus 123 ~~~i~~ik~~~p~v~Vi~G~v~t~~~A~~l~~aGaD~I~vg~g~G~~~~t~~~~g~g~p~~~~i~~v~~~~~~~~vpVIA 202 (325)
T cd00381 123 IEMIKFIKKKYPNVDVIAGNVVTAEAARDLIDAGADGVKVGIGPGSICTTRIVTGVGVPQATAVADVAAAARDYGVPVIA 202 (325)
T ss_pred HHHHHHHHHHCCCceEEECCCCCHHHHHHHHhcCCCEEEECCCCCcCcccceeCCCCCCHHHHHHHHHHHHhhcCCcEEe
Confidence 6667788877776666552233446677788888886 1 1111 112333334433321 1456889
Q ss_pred eCCCCc
Q psy11600 264 DGGVGP 269 (277)
Q Consensus 264 DGGI~~ 269 (277)
||||+.
T Consensus 203 ~GGI~~ 208 (325)
T cd00381 203 DGGIRT 208 (325)
T ss_pred cCCCCC
Confidence 999985
No 348
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=83.53 E-value=8.3 Score=35.84 Aligned_cols=110 Identities=10% Similarity=0.087 Sum_probs=69.2
Q ss_pred HHHcCCCEEEEeccccccccCCCCCHHHHHH-HHhcCCCCeeeeeeeccCcHHhH---HHHHhcCCCeEEEeccCC----
Q psy11600 27 LLDSGADYLHLDVMDGTFVPNLTFGHPVVKC-LRNKIPKAFFETHMMVQNPQQWI---EPMADANVDQYTFHVEPV---- 98 (277)
Q Consensus 27 l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~-l~~~~~~~~~d~Hlmv~~p~~~i---~~l~~ag~d~i~~H~e~~---- 98 (277)
+.+.|++.++---+- ...+....+..+. +...-.+.|+-+-|+-.+|+++. +.+.++|+|.|-+|.-.-
T Consensus 27 ~~~~g~~~~~temi~---~~~l~~~~~~~~~~~~~~~~~~p~i~ql~g~~~~~~~~aa~~~~~~G~d~IelN~gcP~~~~ 103 (319)
T TIGR00737 27 VAEYGAGLTVCEMVS---SEAIVYDSQRTMRLLDIAEDETPISVQLFGSDPDTMAEAAKINEELGADIIDINMGCPVPKI 103 (319)
T ss_pred HHHHCCCEEEECCEE---EhhhhcCCHHHHHHhhcCCccceEEEEEeCCCHHHHHHHHHHHHhCCCCEEEEECCCCHHHh
Confidence 455677765543322 2223333322322 33222367899999999998874 445678999998886532
Q ss_pred -C--CC----------HHHHHHHHhhCCCcccc------------hhhhhHHHHhcCCCeEEeecC
Q psy11600 99 -D--NV----------PQVIRQIKEAGMKVGQV------------LQDWIEPMADANVDQYTFHVE 139 (277)
Q Consensus 99 -d--~g----------~~~i~~i~~~~~~~~d~------------p~~~i~~~~~~g~d~it~H~E 139 (277)
+ +| -++++++|+.+..|+.+ ..++++.+.++|+|.+++|.-
T Consensus 104 ~~~~~Gs~l~~~~~~~~ei~~~vr~~~~~pv~vKir~g~~~~~~~~~~~a~~l~~~G~d~i~vh~r 169 (319)
T TIGR00737 104 TKKGAGSALLRDPDLIGKIVKAVVDAVDIPVTVKIRIGWDDAHINAVEAARIAEDAGAQAVTLHGR 169 (319)
T ss_pred cCCCccchHhCCHHHHHHHHHHHHhhcCCCEEEEEEcccCCCcchHHHHHHHHHHhCCCEEEEEcc
Confidence 1 12 35677888776655543 346778889999999999964
No 349
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=83.53 E-value=2.8 Score=36.92 Aligned_cols=75 Identities=21% Similarity=0.302 Sum_probs=51.7
Q ss_pred cccCcccHHHHHHHHHHcCCCEEEEeccc--cccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHH--HHhcCC
Q psy11600 13 LNSDLSNLHSESQNLLDSGADYLHLDVMD--GTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEP--MADANV 88 (277)
Q Consensus 13 ~~~d~~~l~~~~~~l~~~~~~~~h~DimD--g~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~--l~~ag~ 88 (277)
-..++..+.+..+.+.+.|+|. +=+.| |...|+-. .+.++.+|+.+|++++.+|.=-..-...... ..++|+
T Consensus 132 ~~~~~~~~~~~~~~~~~~g~~~--i~l~Dt~G~~~P~~v--~~lv~~~~~~~~~~~l~~H~Hnd~Gla~An~laA~~aGa 207 (237)
T PF00682_consen 132 SRTDPEELLELAEALAEAGADI--IYLADTVGIMTPEDV--AELVRALREALPDIPLGFHAHNDLGLAVANALAALEAGA 207 (237)
T ss_dssp GGSSHHHHHHHHHHHHHHT-SE--EEEEETTS-S-HHHH--HHHHHHHHHHSTTSEEEEEEBBTTS-HHHHHHHHHHTT-
T ss_pred ccccHHHHHHHHHHHHHcCCeE--EEeeCccCCcCHHHH--HHHHHHHHHhccCCeEEEEecCCccchhHHHHHHHHcCC
Confidence 3456677888888999999999 55666 77777632 2789999999998999999987553333222 346899
Q ss_pred CeE
Q psy11600 89 DQY 91 (277)
Q Consensus 89 d~i 91 (277)
+++
T Consensus 208 ~~i 210 (237)
T PF00682_consen 208 DRI 210 (237)
T ss_dssp SEE
T ss_pred CEE
Confidence 998
No 350
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=83.41 E-value=7.4 Score=34.74 Aligned_cols=77 Identities=18% Similarity=0.197 Sum_probs=47.7
Q ss_pred CCceEeeeccccCcccHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHH
Q psy11600 4 VQCMIGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPM 83 (277)
Q Consensus 4 ~~~~~~~s~~~~d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l 83 (277)
+.+++.+.. | .+..+-.+.+++.|+|.+|+|-+.... ....+.+++++ +++|+-.-=-+.++++..+.+
T Consensus 142 VsvKir~g~---~-~~~~~la~~l~~aG~d~ihv~~~~~g~----~ad~~~I~~i~---~~ipVIgnGgI~s~eda~~~l 210 (233)
T cd02911 142 VSVKIRAGV---D-VDDEELARLIEKAGADIIHVDAMDPGN----HADLKKIRDIS---TELFIIGNNSVTTIESAKEMF 210 (233)
T ss_pred EEEEEcCCc---C-cCHHHHHHHHHHhCCCEEEECcCCCCC----CCcHHHHHHhc---CCCEEEEECCcCCHHHHHHHH
Confidence 344555542 2 345556677889999999998765321 22346666665 466765544455666666655
Q ss_pred HhcCCCeEE
Q psy11600 84 ADANVDQYT 92 (277)
Q Consensus 84 ~~ag~d~i~ 92 (277)
+.|+|.+.
T Consensus 211 -~~GaD~Vm 218 (233)
T cd02911 211 -SYGADMVS 218 (233)
T ss_pred -HcCCCEEE
Confidence 48999883
No 351
>TIGR02127 pyrF_sub2 orotidine 5'-phosphate decarboxylase, subfamily 2. This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. See TIGR01740 for a related but distinct subfamily of the same enzyme.
Probab=83.37 E-value=27 Score=31.89 Aligned_cols=57 Identities=12% Similarity=0.031 Sum_probs=40.2
Q ss_pred CCCHHHH-------HHHHhcCCCCeeeeeeeccCcHH----hHHHHH-hcCCCeEEEeccCCCCCHHHHHHHHh
Q psy11600 49 TFGHPVV-------KCLRNKIPKAFFETHMMVQNPQQ----WIEPMA-DANVDQYTFHVEPVDNVPQVIRQIKE 110 (277)
Q Consensus 49 ~~g~~~v-------~~l~~~~~~~~~d~Hlmv~~p~~----~i~~l~-~ag~d~i~~H~e~~d~g~~~i~~i~~ 110 (277)
.+|++.+ +.+++. ++++-.+++-.|..+ |.+.+. ..|+|.+|+|. -+|.+.++...+
T Consensus 66 ~~G~~gi~~l~~~~~~~~~~--g~~VilD~K~~DIpnTv~~~a~a~~~~~g~D~vTvh~---~~G~d~l~~~~~ 134 (261)
T TIGR02127 66 RFGSEGFKALEEVIAHARSL--GLPVLADVKRGDIGSTASAYAKAWLGHLHADALTVSP---YLGLDSLRPFLE 134 (261)
T ss_pred hcCHHHHHHHHHHHHHHHHC--CCeEEEEeeccChHHHHHHHHHHHHhhcCCCEEEECC---cCCHHHHHHHHH
Confidence 3588888 555543 678899999999764 555655 67899999995 445666655443
No 352
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=83.36 E-value=10 Score=35.57 Aligned_cols=126 Identities=14% Similarity=0.099 Sum_probs=72.2
Q ss_pred ceEeeeccccC-------cccHHHHHHHHHHcCCCEEEEeccccccccCCC---------CCHHHHHHHHhcCC----CC
Q psy11600 6 CMIGPSILNSD-------LSNLHSESQNLLDSGADYLHLDVMDGTFVPNLT---------FGHPVVKCLRNKIP----KA 65 (277)
Q Consensus 6 ~~~~~s~~~~d-------~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~---------~g~~~v~~l~~~~~----~~ 65 (277)
.-+..||..-+ +.++.+.++.+.. ++|++=+.+ .+||.. .=.++++++|+... ++
T Consensus 129 ~plivsi~g~~~~~~~~~~~d~~~~~~~~~~-~ad~ielN~----scP~~~g~~~~~~~~~~~~iv~av~~~~~~~~~~~ 203 (327)
T cd04738 129 GPLGVNIGKNKDTPLEDAVEDYVIGVRKLGP-YADYLVVNV----SSPNTPGLRDLQGKEALRELLTAVKEERNKLGKKV 203 (327)
T ss_pred CeEEEEEeCCCCCcccccHHHHHHHHHHHHh-hCCEEEEEC----CCCCCCccccccCHHHHHHHHHHHHHHHhhcccCC
Confidence 34677886555 3344455555544 366633333 355532 11267788887632 37
Q ss_pred eeeeeeecc----CcHHhHHHHHhcCCCeEEEeccCC-------------C-C--C-------HHHHHHHHhhC--CCcc
Q psy11600 66 FFETHMMVQ----NPQQWIEPMADANVDQYTFHVEPV-------------D-N--V-------PQVIRQIKEAG--MKVG 116 (277)
Q Consensus 66 ~~d~Hlmv~----~p~~~i~~l~~ag~d~i~~H~e~~-------------d-~--g-------~~~i~~i~~~~--~~~~ 116 (277)
|+.+=|--. +..+..+.+.++|+|.+++|--.. . | | .+.++++++.. ..++
T Consensus 204 Pv~vKl~~~~~~~~~~~ia~~l~~aGad~I~~~n~~~~~~~~~~~~~~~~~gG~sG~~~~~~~l~~v~~l~~~~~~~ipI 283 (327)
T cd04738 204 PLLVKIAPDLSDEELEDIADVALEHGVDGIIATNTTISRPGLLRSPLANETGGLSGAPLKERSTEVLRELYKLTGGKIPI 283 (327)
T ss_pred CeEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEECCcccccccccccccCCCCccCChhhhHHHHHHHHHHHHHhCCCCcE
Confidence 777766422 234456778889999999885321 0 1 2 35666776665 3333
Q ss_pred cc------hhhhhHHHHhcCCCeEEee
Q psy11600 117 QV------LQDWIEPMADANVDQYTFH 137 (277)
Q Consensus 117 d~------p~~~i~~~~~~g~d~it~H 137 (277)
-. +++..+.+. +|||.+-+.
T Consensus 284 i~~GGI~t~~da~e~l~-aGAd~V~vg 309 (327)
T cd04738 284 IGVGGISSGEDAYEKIR-AGASLVQLY 309 (327)
T ss_pred EEECCCCCHHHHHHHHH-cCCCHHhcc
Confidence 21 666666654 888877765
No 353
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=83.33 E-value=18 Score=31.66 Aligned_cols=101 Identities=14% Similarity=0.176 Sum_probs=65.5
Q ss_pred HHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEEeccCCCCC
Q psy11600 22 SESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTFHVEPVDNV 101 (277)
Q Consensus 22 ~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~H~e~~d~g 101 (277)
++.+...++|+++ -..|+ |.+++++.-+++ ++++--..| .|.+.. ...++|++.+=+-.-..-||
T Consensus 71 e~a~~a~~aGA~F--------ivSP~--~~~~v~~~~~~~--~i~~iPG~~--TptEi~-~A~~~G~~~vK~FPA~~~GG 135 (196)
T PF01081_consen 71 EQAEAAIAAGAQF--------IVSPG--FDPEVIEYAREY--GIPYIPGVM--TPTEIM-QALEAGADIVKLFPAGALGG 135 (196)
T ss_dssp HHHHHHHHHT-SE--------EEESS----HHHHHHHHHH--TSEEEEEES--SHHHHH-HHHHTT-SEEEETTTTTTTH
T ss_pred HHHHHHHHcCCCE--------EECCC--CCHHHHHHHHHc--CCcccCCcC--CHHHHH-HHHHCCCCEEEEecchhcCc
Confidence 5777788889998 56787 899999998875 777777665 466544 55678999995554434457
Q ss_pred HHHHHHHHhhCCCcccc-----hhhhhHHHHhcCCCeEEee
Q psy11600 102 PQVIRQIKEAGMKVGQV-----LQDWIEPMADANVDQYTFH 137 (277)
Q Consensus 102 ~~~i~~i~~~~~~~~d~-----p~~~i~~~~~~g~d~it~H 137 (277)
+..+|+++..-...--+ ..+=+..+.++|+..+..-
T Consensus 136 ~~~ik~l~~p~p~~~~~ptGGV~~~N~~~~l~ag~~~vg~G 176 (196)
T PF01081_consen 136 PSYIKALRGPFPDLPFMPTGGVNPDNLAEYLKAGAVAVGGG 176 (196)
T ss_dssp HHHHHHHHTTTTT-EEEEBSS--TTTHHHHHTSTTBSEEEE
T ss_pred HHHHHHHhccCCCCeEEEcCCCCHHHHHHHHhCCCEEEEEC
Confidence 99999998754321112 3445666677776666554
No 354
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=83.23 E-value=26 Score=31.20 Aligned_cols=109 Identities=14% Similarity=0.173 Sum_probs=68.0
Q ss_pred HHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCC-Ceeeeeeecc-------------CcHHhHHHHHhc
Q psy11600 21 HSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPK-AFFETHMMVQ-------------NPQQWIEPMADA 86 (277)
Q Consensus 21 ~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~-~~~d~Hlmv~-------------~p~~~i~~l~~a 86 (277)
.++++++.+.|++.+ |..+.... .|++++++.+.|++ +-+.+...-. +|.++++.+.+.
T Consensus 88 ~e~v~~~l~~Ga~kv---vigt~a~~----~~~~l~~~~~~fg~~ivvslD~~~g~v~~~gw~~~~~~~~~~~~~~~~~~ 160 (234)
T PRK13587 88 KSQIMDYFAAGINYC---IVGTKGIQ----DTDWLKEMAHTFPGRIYLSVDAYGEDIKVNGWEEDTELNLFSFVRQLSDI 160 (234)
T ss_pred HHHHHHHHHCCCCEE---EECchHhc----CHHHHHHHHHHcCCCEEEEEEeeCCEEEecCCcccCCCCHHHHHHHHHHc
Confidence 356777778899993 44333332 57889999988864 3344443221 257789999999
Q ss_pred CCCeEEEeccCCCC-----CHHHHHHHHhhCCCcccc-----hhhhhHHHHhcCCCeEEe
Q psy11600 87 NVDQYTFHVEPVDN-----VPQVIRQIKEAGMKVGQV-----LQDWIEPMADANVDQYTF 136 (277)
Q Consensus 87 g~d~i~~H~e~~d~-----g~~~i~~i~~~~~~~~d~-----p~~~i~~~~~~g~d~it~ 136 (277)
|+..+.+---..|| ..++++++++.+..|+.+ -.+-+..+.+.|++.+.+
T Consensus 161 g~~~ii~tdi~~dGt~~G~~~~li~~l~~~~~ipvi~~GGi~s~edi~~l~~~G~~~viv 220 (234)
T PRK13587 161 PLGGIIYTDIAKDGKMSGPNFELTGQLVKATTIPVIASGGIRHQQDIQRLASLNVHAAII 220 (234)
T ss_pred CCCEEEEecccCcCCCCccCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 98764322111233 466788888877666654 233344444678887776
No 355
>TIGR00190 thiC thiamine biosynthesis protein ThiC. The thiC ortholog is designated thiA in Bacillus subtilis.
Probab=83.22 E-value=12 Score=36.26 Aligned_cols=85 Identities=16% Similarity=0.192 Sum_probs=49.9
Q ss_pred ccCcHHhHHHH---HhcCCCeEEEeccCCCCCHHHHHHHHhh----CCCcc-----------------cc-hhhhh---H
Q psy11600 73 VQNPQQWIEPM---ADANVDQYTFHVEPVDNVPQVIRQIKEA----GMKVG-----------------QV-LQDWI---E 124 (277)
Q Consensus 73 v~~p~~~i~~l---~~ag~d~i~~H~e~~d~g~~~i~~i~~~----~~~~~-----------------d~-p~~~i---~ 124 (277)
..+++.+++++ .++|+|.+ -|-.+|| -+..+|+. +..|+ ++ ++.++ +
T Consensus 73 ~~d~~~E~~K~~~A~~~GADti---MDLStGg--dl~~iR~~il~~s~vpvGTVPiYqa~~~~~~~~~~mt~d~~~~~ie 147 (423)
T TIGR00190 73 TSDIEEEVEKALIAIKYGADTV---MDLSTGG--DLDEIRKAILDAVPVPVGTVPIYQAAEKVHGAVEDMDEDDMFRAIE 147 (423)
T ss_pred CCCHHHHHHHHHHHHHcCCCeE---eeccCCC--CHHHHHHHHHHcCCCCccCccHHHHHHHhcCChhhCCHHHHHHHHH
Confidence 34677776666 56799998 2333332 13334333 33222 22 44444 4
Q ss_pred HHHhcCCCeEEeecCCCCChHHHHHHHHHhCCccceeeCCC
Q psy11600 125 PMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPK 165 (277)
Q Consensus 125 ~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~i~p~ 165 (277)
.=++.|+|++|+|.. -..+.++.+++.+=..|+.-+-|
T Consensus 148 ~qa~dGVDfmTiH~G---i~~~~~~~~~~~~R~~giVSRGG 185 (423)
T TIGR00190 148 KQAKDGVDFMTIHAG---VLLEYVERLKRSGRITGIVSRGG 185 (423)
T ss_pred HHHHhCCCEEEEccc---hhHHHHHHHHhCCCccCeecCcH
Confidence 447889999999987 66677777776543345544444
No 356
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=83.18 E-value=16 Score=33.58 Aligned_cols=128 Identities=14% Similarity=0.115 Sum_probs=92.5
Q ss_pred eeccccCcccHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeee---------------eeecc
Q psy11600 10 PSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFET---------------HMMVQ 74 (277)
Q Consensus 10 ~s~~~~d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~---------------Hlmv~ 74 (277)
|=.+..|-..--+.+.+..+.|.+++-+|--.-+|=.|+..--++++.-++. ++.+++ .....
T Consensus 71 PV~lHLDH~~~~~~i~~ai~~GftSVMiD~S~l~~eeNi~~t~~vv~~ah~~--gv~VEaElG~i~g~e~~~~~~~~~~T 148 (276)
T cd00947 71 PVALHLDHGSSFELIKRAIRAGFSSVMIDGSHLPFEENVAKTKEVVELAHAY--GVSVEAELGRIGGEEDGVVGDEGLLT 148 (276)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCEEEeCCCCCCHHHHHHHHHHHHHHHHHc--CCeEEEEEeeecCccCCcccccccCC
Confidence 4455667665456666777789999999987777877888877777777753 333332 12355
Q ss_pred CcHHhHHHHHhcCCCeEEEeccCCC---------CCHHHHHHHHhhCCCcccc------hhhhhHHHHhcCCCeEEeecC
Q psy11600 75 NPQQWIEPMADANVDQYTFHVEPVD---------NVPQVIRQIKEAGMKVGQV------LQDWIEPMADANVDQYTFHVE 139 (277)
Q Consensus 75 ~p~~~i~~l~~ag~d~i~~H~e~~d---------~g~~~i~~i~~~~~~~~d~------p~~~i~~~~~~g~d~it~H~E 139 (277)
+|++-.+.+.+.|+|++.+=+-..- .-.+.++.|++....|+-+ |++.+...++.|+.-|-+..+
T Consensus 149 ~pe~a~~Fv~~TgvD~LAvsiGt~HG~Y~~~~p~L~~~~L~~i~~~~~vPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~T~ 228 (276)
T cd00947 149 DPEEAEEFVEETGVDALAVAIGTSHGAYKGGEPKLDFDRLKEIAERVNVPLVLHGGSGIPDEQIRKAIKLGVCKININTD 228 (276)
T ss_pred CHHHHHHHHHHHCCCEEEeccCccccccCCCCCccCHHHHHHHHHHhCCCEEEeCCCCCCHHHHHHHHHcCCeEEEeChH
Confidence 7887777777789999975543322 2578899999987665532 888899999999999999775
No 357
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=83.16 E-value=24 Score=38.91 Aligned_cols=80 Identities=20% Similarity=0.162 Sum_probs=42.9
Q ss_pred CCCCCchhhhhhhhhHHHHHhhCCCccEEE----eCCCCcCcHHHHHHccCCC--------CCcccccCHHHHHHHHHhh
Q psy11600 188 PGFGGQKFMQDMMPKVKWLRENYPTLNIEV----DGGVGPNTIDECAKCLTGF--------GGQKFMQDMMPKVKWLREN 255 (277)
Q Consensus 188 Pgt~gq~~~~~~l~kI~~l~~~~~~~~i~v----dGgV~~~tv~~~~~~gpg~--------ggq~F~~~~~~kI~~l~~~ 255 (277)
+++.|...=..+.+-++.+++.. ++.+.+ +-|.-..|.-...++|++. ||..+.+.+..-+..|+..
T Consensus 709 kDt~Gll~P~~~~~Lv~~lk~~~-~~pi~~H~Hdt~Gla~an~laA~eaGad~vD~ai~gl~G~ts~p~~e~~v~~L~~~ 787 (1143)
T TIGR01235 709 KDMAGLLKPAAAKLLIKALREKT-DLPIHFHTHDTSGIAVASMLAAVEAGVDVVDVAVDSMSGLTSQPSLGAIVAALEGS 787 (1143)
T ss_pred CCCcCCcCHHHHHHHHHHHHHhc-CCeEEEEECCCCCcHHHHHHHHHHhCCCEEEecchhhcCCCCCHhHHHHHHHHHhC
Confidence 45555433344445566666543 344443 3455556665566677764 6677777665555555532
Q ss_pred CCCCeEEEeCCCCccCHHH
Q psy11600 256 YPTLNIEVDGGVGPNTIDE 274 (277)
Q Consensus 256 ~~~~~I~VDGGI~~~~~~~ 274 (277)
..|=|++.+.+.+
T Consensus 788 ------~~~tgidl~~l~~ 800 (1143)
T TIGR01235 788 ------ERDPGLNVAWIRE 800 (1143)
T ss_pred ------CCCCCcCHHHHHH
Confidence 2334566555444
No 358
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=83.14 E-value=3.2 Score=38.29 Aligned_cols=73 Identities=12% Similarity=0.180 Sum_probs=53.4
Q ss_pred cCcccHHHHHHHHHHcCCCEEEEeccc--cccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHH--HHhcCCCe
Q psy11600 15 SDLSNLHSESQNLLDSGADYLHLDVMD--GTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEP--MADANVDQ 90 (277)
Q Consensus 15 ~d~~~l~~~~~~l~~~~~~~~h~DimD--g~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~--l~~ag~d~ 90 (277)
.|...+.+..+.+.+.|+|. +=+-| |...|.=. .+.++.+|+.++++++.+|.=-..-...... ..++|+++
T Consensus 152 ~~~~~~~~~~~~~~~~G~d~--i~l~DT~G~~~P~~v--~~lv~~l~~~~~~~~i~~H~Hn~~Gla~AN~laA~~aG~~~ 227 (287)
T PRK05692 152 VPPEAVADVAERLFALGCYE--ISLGDTIGVGTPGQV--RAVLEAVLAEFPAERLAGHFHDTYGQALANIYASLEEGITV 227 (287)
T ss_pred CCHHHHHHHHHHHHHcCCcE--EEeccccCccCHHHH--HHHHHHHHHhCCCCeEEEEecCCCCcHHHHHHHHHHhCCCE
Confidence 46778888999999999999 66777 55555422 2678889988888899999877653333332 24689999
Q ss_pred E
Q psy11600 91 Y 91 (277)
Q Consensus 91 i 91 (277)
+
T Consensus 228 i 228 (287)
T PRK05692 228 F 228 (287)
T ss_pred E
Confidence 8
No 359
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=83.02 E-value=16 Score=33.76 Aligned_cols=128 Identities=14% Similarity=0.167 Sum_probs=93.3
Q ss_pred eeccccCcccHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeee---------------eecc
Q psy11600 10 PSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETH---------------MMVQ 74 (277)
Q Consensus 10 ~s~~~~d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~H---------------lmv~ 74 (277)
|=.+..|-..--+.+.+..+.|.+++-+|--.=+|=.|+..--++++.-+.. ++.+++= -...
T Consensus 79 PV~lHLDHg~~~e~i~~ai~~GftSVM~DgS~l~~eeNi~~T~~vve~Ah~~--gv~VEaElG~vgg~ed~~~~~~~~yT 156 (286)
T PRK08610 79 PVAIHLDHGSSFEKCKEAIDAGFTSVMIDASHSPFEENVATTKKVVEYAHEK--GVSVEAELGTVGGQEDDVVADGIIYA 156 (286)
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHc--CCEEEEEEeccCCccCCCCCcccccC
Confidence 5556677775566777777889999999877777777877777777766643 3333321 2246
Q ss_pred CcHHhHHHHHhcCCCeEEEeccCCCC--------CHHHHHHHHhhCCCcccc------hhhhhHHHHhcCCCeEEeecC
Q psy11600 75 NPQQWIEPMADANVDQYTFHVEPVDN--------VPQVIRQIKEAGMKVGQV------LQDWIEPMADANVDQYTFHVE 139 (277)
Q Consensus 75 ~p~~~i~~l~~ag~d~i~~H~e~~d~--------g~~~i~~i~~~~~~~~d~------p~~~i~~~~~~g~d~it~H~E 139 (277)
+|++-.+.+.+.|+|++.+=+-..-| -.+.++.|++.+..|+-+ |++.+...+++|+.-|-+..|
T Consensus 157 ~peea~~Fv~~TgvD~LAvaiGt~HG~Y~~~p~Ld~~~L~~I~~~~~vPLVLHGgSG~~~e~~~~ai~~GI~KiNi~T~ 235 (286)
T PRK08610 157 DPKECQELVEKTGIDALAPALGSVHGPYKGEPKLGFKEMEEIGLSTGLPLVLHGGTGIPTKDIQKAIPFGTAKINVNTE 235 (286)
T ss_pred CHHHHHHHHHHHCCCEEEeeccccccccCCCCCCCHHHHHHHHHHHCCCEEEeCCCCCCHHHHHHHHHCCCeEEEeccH
Confidence 78887777778899999766544333 578899998887666533 888899999999999998765
No 360
>KOG2794|consensus
Probab=82.96 E-value=35 Score=31.50 Aligned_cols=94 Identities=21% Similarity=0.285 Sum_probs=59.4
Q ss_pred eeccccCcccHHHHHHHHHHcCCCEEEE-ecc-----c--c--ccccCCCCCHHHHHHHHhcCCCCeeeeeeecc-----
Q psy11600 10 PSILNSDLSNLHSESQNLLDSGADYLHL-DVM-----D--G--TFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQ----- 74 (277)
Q Consensus 10 ~s~~~~d~~~l~~~~~~l~~~~~~~~h~-Dim-----D--g--~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~----- 74 (277)
|.+.-.-+.+|.++++.|.+.|...+-+ -+. | | .+-+| +--++.|+-||+.||++.+-++.-.+
T Consensus 61 Pg~~r~G~~rL~e~l~plv~~Gl~sViLfgvv~~~~Kd~~gs~Ads~~-gpvi~ai~~lr~~fPdL~i~cDVclc~Yssh 139 (340)
T KOG2794|consen 61 PGIYRLGVNRLKEELAPLVAKGLRSVILFGVVPEALKDPTGSEADSDN-GPVIRAIRLLRDRFPDLVIACDVCLCEYSSH 139 (340)
T ss_pred CchhHHHHHHHHHHHHHHHHhccceEEEecCCCccccCcccccccCCC-CcHHHHHHHHHHhCcceEEEeeeeeccccCC
Confidence 5555566678999999999999988432 111 1 1 11122 22358899999999999887765432
Q ss_pred ------------CcHHhHH-------HHHhcCCCeEEEeccCCCCCHHHH
Q psy11600 75 ------------NPQQWIE-------PMADANVDQYTFHVEPVDNVPQVI 105 (277)
Q Consensus 75 ------------~p~~~i~-------~l~~ag~d~i~~H~e~~d~g~~~i 105 (277)
|-.+-+. .+.++||+.+. ..|.|||--..|
T Consensus 140 GHcGll~EdG~i~~~esv~rlaevAv~yAkAGa~vVa-pSDmmDgRV~aI 188 (340)
T KOG2794|consen 140 GHCGLLGEDGVINNDESVHRLAEVAVSYAKAGADVVA-PSDMMDGRVGAI 188 (340)
T ss_pred CccceecccccccCHHHHHHHHHHHHHHHhcCCceec-chHhhcchHHHH
Confidence 1222233 34568999885 678888743333
No 361
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=82.86 E-value=12 Score=35.41 Aligned_cols=114 Identities=13% Similarity=0.158 Sum_probs=68.5
Q ss_pred HHHHHHHHHcCCCEEEEeccccc------cc----------------cCCCCCHHHHHHHHhcCCCCeeeeeeecc----
Q psy11600 21 HSESQNLLDSGADYLHLDVMDGT------FV----------------PNLTFGHPVVKCLRNKIPKAFFETHMMVQ---- 74 (277)
Q Consensus 21 ~~~~~~l~~~~~~~~h~DimDg~------fv----------------p~~~~g~~~v~~l~~~~~~~~~d~Hlmv~---- 74 (277)
.+..+++.++|.|. |+|-=++ |. .-..|-.++++++|+..+.-++-+-+-..
T Consensus 155 ~~aA~~a~~aGfDg--Veih~ahGyLl~qFlSp~~N~R~D~yGGslenR~rf~~eii~air~~vg~d~v~vRis~~~~~~ 232 (338)
T cd02933 155 RQAARNAIEAGFDG--VEIHGANGYLIDQFLRDGSNKRTDEYGGSIENRARFLLEVVDAVAEAIGADRVGIRLSPFGTFN 232 (338)
T ss_pred HHHHHHHHHcCCCE--EEEccccchhHHHhcCCccCCCCCcCCCcHHHhhhHHHHHHHHHHHHhCCCceEEEECccccCC
Confidence 35556788899999 4443322 21 12334468999999875432455544322
Q ss_pred ------CcH---HhHHHHHhcCCCeEEE-eccC---C-CCCHHHHHHHHhhCCCcccc-----hhhhhHHHHhcCCCeEE
Q psy11600 75 ------NPQ---QWIEPMADANVDQYTF-HVEP---V-DNVPQVIRQIKEAGMKVGQV-----LQDWIEPMADANVDQYT 135 (277)
Q Consensus 75 ------~p~---~~i~~l~~ag~d~i~~-H~e~---~-d~g~~~i~~i~~~~~~~~d~-----p~~~i~~~~~~g~d~it 135 (277)
.++ +.++.+.++|+|++++ |... . ....+..+.+|+....|+-+ |+..-+.+.+-++|.|.
T Consensus 233 ~~~~~~~~ee~~~~~~~l~~~g~d~i~vs~g~~~~~~~~~~~~~~~~ik~~~~ipvi~~G~i~~~~a~~~l~~g~~D~V~ 312 (338)
T cd02933 233 DMGDSDPEATFSYLAKELNKRGLAYLHLVEPRVAGNPEDQPPDFLDFLRKAFKGPLIAAGGYDAESAEAALADGKADLVA 312 (338)
T ss_pred CCCCCCCHHHHHHHHHHHHHcCCcEEEEecCCCCCcccccchHHHHHHHHHcCCCEEEECCCCHHHHHHHHHcCCCCEEE
Confidence 122 3467788889999976 4221 1 12556788888887665532 55544444445588888
Q ss_pred e
Q psy11600 136 F 136 (277)
Q Consensus 136 ~ 136 (277)
+
T Consensus 313 ~ 313 (338)
T cd02933 313 F 313 (338)
T ss_pred e
Confidence 7
No 362
>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....
Probab=82.62 E-value=5.6 Score=36.81 Aligned_cols=128 Identities=16% Similarity=0.181 Sum_probs=93.6
Q ss_pred eeccccCcccHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeee------------------ee
Q psy11600 10 PSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFET------------------HM 71 (277)
Q Consensus 10 ~s~~~~d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~------------------Hl 71 (277)
|=.+..|-..--+.+++..+.|.+++-+|--.-+|=.|+..--++++.-++. ++.+++ .-
T Consensus 75 PValHLDH~~~~e~i~~ai~~GftSVM~DgS~l~~eeNi~~T~~vv~~ah~~--gv~VEaElG~i~g~ed~~~~~~~~~~ 152 (287)
T PF01116_consen 75 PVALHLDHGKDFEDIKRAIDAGFTSVMIDGSALPFEENIAITREVVEYAHAY--GVSVEAELGHIGGKEDGIESEEETES 152 (287)
T ss_dssp EEEEEEEEE-SHHHHHHHHHHTSSEEEEE-TTS-HHHHHHHHHHHHHHHHHT--T-EEEEEESBSSSSCTTCSSSTT-TT
T ss_pred CEEeecccCCCHHHHHHHHHhCcccccccCCcCCHHHHHHHHHHHHHhhhhh--CCEEEEEeeeeeccCCCccccccccc
Confidence 4455566666667778878889999999999888988988888888887763 332221 34
Q ss_pred eccCcHHhHHHHHhcCCCeEEEeccCCCC----------CHHHHHHHHhhC-CCcccc------hhhhhHHHHhcCCCeE
Q psy11600 72 MVQNPQQWIEPMADANVDQYTFHVEPVDN----------VPQVIRQIKEAG-MKVGQV------LQDWIEPMADANVDQY 134 (277)
Q Consensus 72 mv~~p~~~i~~l~~ag~d~i~~H~e~~d~----------g~~~i~~i~~~~-~~~~d~------p~~~i~~~~~~g~d~i 134 (277)
+..+|++-.+.+.+.|+|++.+=+-..-| -.+.+++|++.. ..|+-+ |++.+...+++|+.-|
T Consensus 153 ~~TdP~~a~~Fv~~TgvD~LAvaiGt~HG~y~~~~~p~Ld~~~L~~I~~~~~~iPLVlHGgSG~~~e~~~~ai~~Gi~Ki 232 (287)
T PF01116_consen 153 LYTDPEEAKEFVEETGVDALAVAIGTAHGMYKGGKKPKLDFDRLKEIREAVPDIPLVLHGGSGLPDEQIRKAIKNGISKI 232 (287)
T ss_dssp CSSSHHHHHHHHHHHTTSEEEE-SSSBSSSBSSSSSTC--HHHHHHHHHHHHTSEEEESSCTTS-HHHHHHHHHTTEEEE
T ss_pred cccCHHHHHHHHHHhCCCEEEEecCccccccCCCCCcccCHHHHHHHHHhcCCCCEEEECCCCCCHHHHHHHHHcCceEE
Confidence 55688888888889999999776554332 478999999988 776543 9999999999999999
Q ss_pred EeecC
Q psy11600 135 TFHVE 139 (277)
Q Consensus 135 t~H~E 139 (277)
-+..|
T Consensus 233 Ni~T~ 237 (287)
T PF01116_consen 233 NIGTE 237 (287)
T ss_dssp EESHH
T ss_pred EEehH
Confidence 99765
No 363
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=82.53 E-value=12 Score=36.02 Aligned_cols=80 Identities=9% Similarity=0.016 Sum_probs=47.0
Q ss_pred HHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEEeccC-------CCCCHHHHHHHHhhCCCcc---cc--hh
Q psy11600 53 PVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTFHVEP-------VDNVPQVIRQIKEAGMKVG---QV--LQ 120 (277)
Q Consensus 53 ~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~H~e~-------~d~g~~~i~~i~~~~~~~~---d~--p~ 120 (277)
+.++++|+. .+.+-+-+--.+..++.+.+.++|+|.+++|--. ..+-|..+.++++....|+ ++ ++
T Consensus 123 ~ii~~vr~a--~VtvkiRl~~~~~~e~a~~l~eAGad~I~ihgrt~~q~~~sg~~~p~~l~~~i~~~~IPVI~G~V~t~e 200 (369)
T TIGR01304 123 ERIAEVRDS--GVITAVRVSPQNAREIAPIVVKAGADLLVIQGTLVSAEHVSTSGEPLNLKEFIGELDVPVIAGGVNDYT 200 (369)
T ss_pred HHHHHHHhc--ceEEEEecCCcCHHHHHHHHHHCCCCEEEEeccchhhhccCCCCCHHHHHHHHHHCCCCEEEeCCCCHH
Confidence 567888874 2443443322466778999999999999999322 1223555666655544433 22 33
Q ss_pred hhhHHHHhcCCCeEE
Q psy11600 121 DWIEPMADANVDQYT 135 (277)
Q Consensus 121 ~~i~~~~~~g~d~it 135 (277)
. +..+.++|||.|.
T Consensus 201 ~-A~~~~~aGaDgV~ 214 (369)
T TIGR01304 201 T-ALHLMRTGAAGVI 214 (369)
T ss_pred H-HHHHHHcCCCEEE
Confidence 3 3333346777665
No 364
>PRK05927 hypothetical protein; Provisional
Probab=82.49 E-value=4.9 Score=38.23 Aligned_cols=120 Identities=18% Similarity=0.218 Sum_probs=70.1
Q ss_pred cCcccHHHHHHHHHHcCCCEEEEeccccccccCCCC--CHHHHHHHHhcCCCCee------eeee----eccCcHHhHHH
Q psy11600 15 SDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTF--GHPVVKCLRNKIPKAFF------ETHM----MVQNPQQWIEP 82 (277)
Q Consensus 15 ~d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~--g~~~v~~l~~~~~~~~~------d~Hl----mv~~p~~~i~~ 82 (277)
.+...+.+.++...+.|+..+|+ . |---|+..+ =.+.++.+|+.+|++.+ .+.. .=.-..+.+++
T Consensus 76 ls~eei~~~a~~~~~~G~~~i~i--~-gG~~p~~~~e~~~~~i~~ik~~~p~l~~~~~s~~ei~~~~~~~G~~~~e~l~~ 152 (350)
T PRK05927 76 LSFDEFRSLMQRYVSAGVKTVLL--Q-GGVHPQLGIDYLEELVRITVKEFPSLHPHFFSAVEIAHAAQVSGISTEQALER 152 (350)
T ss_pred cCHHHHHHHHHHHHHCCCCEEEE--e-CCCCCCCCHHHHHHHHHHHHHHCCCCcccCCCHHHHHHHHHhcCCCHHHHHHH
Confidence 45566777788888899999886 3 444466433 23677888876665421 1110 11125567889
Q ss_pred HHhcCCCeEEEe--ccCCCCCHHHHHHHHhhCCCcccc-hhhhhHHHHhc---C----CCeEEeecCCCCChHHHH
Q psy11600 83 MADANVDQYTFH--VEPVDNVPQVIRQIKEAGMKVGQV-LQDWIEPMADA---N----VDQYTFHVEPVDNVPQVI 148 (277)
Q Consensus 83 l~~ag~d~i~~H--~e~~d~g~~~i~~i~~~~~~~~d~-p~~~i~~~~~~---g----~d~it~H~E~~~~~~~~~ 148 (277)
|.++|+++++ | .|+.+ ..+++. -.++.. |++|++-+..+ | +-++.=|.| +..+.+
T Consensus 153 Lk~aGl~~l~-g~~~Et~~------~~~~~~-~~p~k~~~~~rl~~i~~A~~lGi~~~sg~l~G~gE---t~e~ri 217 (350)
T PRK05927 153 LWDAGQRTIP-GGGAEILS------ERVRKI-ISPKKMGPDGWIQFHKLAHRLGFRSTATMMFGHVE---SPEDIL 217 (350)
T ss_pred HHHcCcccCC-CCCchhCC------HHHhhc-cCCCCCCHHHHHHHHHHHHHcCCCcCceeEEeeCC---CHHHHH
Confidence 9999999882 2 45444 122222 125554 67777666433 2 345666677 665433
No 365
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=82.34 E-value=1.7 Score=40.27 Aligned_cols=72 Identities=14% Similarity=0.119 Sum_probs=42.8
Q ss_pred hhhhhHHHHHhhCC-CccEEEeCCCCcCcHHHH---HHccCCC-CCcccccCHHHHHHHHHhh-CCCCeEEEeCCCCccC
Q psy11600 198 DMMPKVKWLRENYP-TLNIEVDGGVGPNTIDEC---AKCLTGF-GGQKFMQDMMPKVKWLREN-YPTLNIEVDGGVGPNT 271 (277)
Q Consensus 198 ~~l~kI~~l~~~~~-~~~i~vdGgV~~~tv~~~---~~~gpg~-ggq~F~~~~~~kI~~l~~~-~~~~~I~VDGGI~~~~ 271 (277)
.+.+.++.+++..+ ...|+| .++|.+++ .++|++. =--.|. .+.+++..+. ..+..+++-||||.+|
T Consensus 182 ~i~~av~~~r~~~~~~~kIeV----Ev~tleea~~a~~agaDiImLDnms---pe~l~~av~~~~~~~~leaSGGI~~~n 254 (290)
T PRK06559 182 SVQKAIAQARAYAPFVKMVEV----EVESLAAAEEAAAAGADIIMLDNMS---LEQIEQAITLIAGRSRIECSGNIDMTT 254 (290)
T ss_pred cHHHHHHHHHHhCCCCCeEEE----ECCCHHHHHHHHHcCCCEEEECCCC---HHHHHHHHHHhcCceEEEEECCCCHHH
Confidence 34456777777665 344444 34565554 4566653 112333 3444444433 2357899999999999
Q ss_pred HHHhh
Q psy11600 272 IDECA 276 (277)
Q Consensus 272 ~~~~~ 276 (277)
++.++
T Consensus 255 i~~yA 259 (290)
T PRK06559 255 ISRFR 259 (290)
T ss_pred HHHHH
Confidence 98876
No 366
>PF01136 Peptidase_U32: Peptidase family U32 This is family U32 in the peptidase classification. ; InterPro: IPR001539 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belonging to MEROPS peptidase family U32 (clan U-). The type example is collagenase (gene prtC) from Porphyromonas gingivalis (Bacteroides gingivalis) [], which is an enzyme that degrades type I collagen and that seems to require a metal cofactor. The product of PrtC is evolutionary related to a number of uncharacterised proteins with a well conserved region containing two cysteines.; GO: 0008233 peptidase activity, 0006508 proteolysis
Probab=82.32 E-value=15 Score=32.09 Aligned_cols=78 Identities=18% Similarity=0.184 Sum_probs=56.1
Q ss_pred cHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeee--eeeccCcHHhHHHHHhcCCCeEEEecc
Q psy11600 19 NLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFET--HMMVQNPQQWIEPMADANVDQYTFHVE 96 (277)
Q Consensus 19 ~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~--Hlmv~~p~~~i~~l~~ag~d~i~~H~e 96 (277)
.+++.++.+.+.|+|.+. |. .+..++.+|+.+|++++.+ .+.+.|+. .++.+.+.|++.+++..|
T Consensus 3 ~~~~~l~~l~~~g~dgi~--------v~----~~g~~~~~k~~~~~~~i~~~~~~nv~N~~-s~~~~~~~G~~~i~ls~E 69 (233)
T PF01136_consen 3 ELEKYLDKLKELGVDGIL--------VS----NPGLLELLKELGPDLKIIADYSLNVFNSE-SARFLKELGASRITLSPE 69 (233)
T ss_pred HHHHHHHHHHhCCCCEEE--------Ec----CHHHHHHHHHhCCCCcEEEecCccCCCHH-HHHHHHHcCCCEEEECcc
Confidence 577889999999988733 32 3445778888778665554 45555554 477888899999999998
Q ss_pred CCCCCHHHHHHHHhhC
Q psy11600 97 PVDNVPQVIRQIKEAG 112 (277)
Q Consensus 97 ~~d~g~~~i~~i~~~~ 112 (277)
.. .+-|+++.+.+
T Consensus 70 L~---~~ei~~i~~~~ 82 (233)
T PF01136_consen 70 LS---LEEIKEIAENS 82 (233)
T ss_pred CC---HHHHHHHHHhC
Confidence 72 45677777666
No 367
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=82.28 E-value=38 Score=32.18 Aligned_cols=141 Identities=14% Similarity=0.241 Sum_probs=87.1
Q ss_pred CCeeeeeeeccCc-------HHhHHHHHhcCCCeEEEeccCCCCCHHHHHHHHhhCCCcc--cc--hhhhhHHHHhcCCC
Q psy11600 64 KAFFETHMMVQNP-------QQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVG--QV--LQDWIEPMADANVD 132 (277)
Q Consensus 64 ~~~~d~Hlmv~~p-------~~~i~~l~~ag~d~i~~H~e~~d~g~~~i~~i~~~~~~~~--d~--p~~~i~~~~~~g~d 132 (277)
+.|+.+.=|+... -+++..|.++|+|.+-+-+.-++ ....++.|++....|+ |. --+++-..+++|++
T Consensus 19 daPI~VQSMTnT~T~Dv~aTv~QI~~L~~aG~dIVRvtv~~~e-~A~A~~~Ik~~~~vPLVaDiHf~~rla~~~~~~g~~ 97 (361)
T COG0821 19 DAPIVVQSMTNTDTADVEATVAQIKALERAGCDIVRVTVPDME-AAEALKEIKQRLNVPLVADIHFDYRLALEAAECGVD 97 (361)
T ss_pred CCceEEEeccCCCcccHHHHHHHHHHHHHcCCCEEEEecCCHH-HHHHHHHHHHhCCCCEEEEeeccHHHHHHhhhcCcc
Confidence 5677777776532 33688899999999966544332 5667888888876655 33 45566777899999
Q ss_pred eEEeecCCCCC---hHHHHHHHHHhCCccceeeCCCCCHHhHHHHHhhcCceEEEEecCCCCCchhhhhhhhhHHHHHhh
Q psy11600 133 QYTFHVEPVDN---VPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIMTVEPGFGGQKFMQDMMPKVKWLREN 209 (277)
Q Consensus 133 ~it~H~E~~~~---~~~~~~~I~~~g~~~g~~i~p~t~~~~i~~~i~~~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~ 209 (277)
.+-+.+.--+. ...+.+..+..|...-+|.|.|. ++ .++++... .| | .+.++++.+..++.+.++
T Consensus 98 k~RINPGNig~~~~v~~vVe~Ak~~g~piRIGVN~GS-Le--k~~~~ky~-------~p-t-~ealveSAl~~a~~~e~l 165 (361)
T COG0821 98 KVRINPGNIGFKDRVREVVEAAKDKGIPIRIGVNAGS-LE--KRLLEKYG-------GP-T-PEALVESALEHAELLEEL 165 (361)
T ss_pred eEEECCcccCcHHHHHHHHHHHHHcCCCEEEecccCc-hh--HHHHHHhc-------CC-C-HHHHHHHHHHHHHHHHHC
Confidence 99998761111 23566677777888889999883 32 11122211 23 2 234566666666665554
Q ss_pred -CCCccEEE
Q psy11600 210 -YPTLNIEV 217 (277)
Q Consensus 210 -~~~~~i~v 217 (277)
++++.+++
T Consensus 166 ~f~~i~iS~ 174 (361)
T COG0821 166 GFDDIKVSV 174 (361)
T ss_pred CCCcEEEEE
Confidence 23444444
No 368
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=82.22 E-value=46 Score=31.45 Aligned_cols=75 Identities=13% Similarity=0.166 Sum_probs=44.0
Q ss_pred cccHHHHHHHHHHcCCCEEEEecccc----ccccCCC-C-CHHHHHHHHhcCCCCeeeeeeec--cCcHHhHHHHHhcCC
Q psy11600 17 LSNLHSESQNLLDSGADYLHLDVMDG----TFVPNLT-F-GHPVVKCLRNKIPKAFFETHMMV--QNPQQWIEPMADANV 88 (277)
Q Consensus 17 ~~~l~~~~~~l~~~~~~~~h~DimDg----~fvp~~~-~-g~~~v~~l~~~~~~~~~d~Hlmv--~~p~~~i~~l~~ag~ 88 (277)
.....+-++.|.++|++++=+=--|| .|..++. + ..+.++.+++..++..+.+.+.- .+ .+.++...++|+
T Consensus 24 ~~~~~~i~~~L~~aGv~~IEvg~~~g~g~~s~~~g~~~~~~~e~i~~~~~~~~~~~~~~ll~pg~~~-~~dl~~a~~~gv 102 (337)
T PRK08195 24 LEQVRAIARALDAAGVPVIEVTHGDGLGGSSFNYGFGAHTDEEYIEAAAEVVKQAKIAALLLPGIGT-VDDLKMAYDAGV 102 (337)
T ss_pred HHHHHHHHHHHHHcCCCEEEeecCCCCCCccccCCCCCCCHHHHHHHHHHhCCCCEEEEEeccCccc-HHHHHHHHHcCC
Confidence 33445667778889988832211121 3331211 1 24678888766677777665532 23 356888888899
Q ss_pred CeEE
Q psy11600 89 DQYT 92 (277)
Q Consensus 89 d~i~ 92 (277)
+++.
T Consensus 103 d~ir 106 (337)
T PRK08195 103 RVVR 106 (337)
T ss_pred CEEE
Confidence 9863
No 369
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=82.21 E-value=3.1 Score=38.30 Aligned_cols=70 Identities=20% Similarity=0.185 Sum_probs=42.9
Q ss_pred hHHHHHhhCCCccEEEeCCCCcCcHHHH---HHccCCC-CCcccccCHHHHHHHHHhhCCCCeEEEeCCCCccCHHHhhC
Q psy11600 202 KVKWLRENYPTLNIEVDGGVGPNTIDEC---AKCLTGF-GGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAK 277 (277)
Q Consensus 202 kI~~l~~~~~~~~i~vdGgV~~~tv~~~---~~~gpg~-ggq~F~~~~~~kI~~l~~~~~~~~I~VDGGI~~~~~~~~~~ 277 (277)
-++.+++..+...|.| ...|.+++ .++||++ .-..|.++.++++.+.. .++..+++=||||.+|++.+++
T Consensus 179 av~~~r~~~~~~~I~V----Ev~tleea~eA~~~gaD~I~LD~~~~e~l~~~v~~~--~~~i~leAsGGIt~~ni~~~a~ 252 (277)
T PRK05742 179 AVAAAHRIAPGKPVEV----EVESLDELRQALAAGADIVMLDELSLDDMREAVRLT--AGRAKLEASGGINESTLRVIAE 252 (277)
T ss_pred HHHHHHHhCCCCeEEE----EeCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh--CCCCcEEEECCCCHHHHHHHHH
Confidence 3556666666555554 45666664 4567775 22344444444433322 2567899999999999988763
No 370
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=82.07 E-value=6.8 Score=38.08 Aligned_cols=12 Identities=33% Similarity=0.531 Sum_probs=9.9
Q ss_pred CCeEEEeCCCCc
Q psy11600 258 TLNIEVDGGVGP 269 (277)
Q Consensus 258 ~~~I~VDGGI~~ 269 (277)
...|-.||||+.
T Consensus 256 ~vpVIAdGGI~~ 267 (404)
T PRK06843 256 NICIIADGGIRF 267 (404)
T ss_pred CCeEEEeCCCCC
Confidence 467999999974
No 371
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=82.06 E-value=6.8 Score=39.11 Aligned_cols=73 Identities=19% Similarity=0.278 Sum_probs=53.0
Q ss_pred cCcccHHHHHHHHHHcCCCEEEEeccc--cccccCCCCCHHHHHHHHhcCC-CCeeeeeeeccCcHHhHH--HHHhcCCC
Q psy11600 15 SDLSNLHSESQNLLDSGADYLHLDVMD--GTFVPNLTFGHPVVKCLRNKIP-KAFFETHMMVQNPQQWIE--PMADANVD 89 (277)
Q Consensus 15 ~d~~~l~~~~~~l~~~~~~~~h~DimD--g~fvp~~~~g~~~v~~l~~~~~-~~~~d~Hlmv~~p~~~i~--~l~~ag~d 89 (277)
.|+..+.+..+++.+.|+|. +=|-| |...|.-. -+.++.||+.++ ++++.+|.=-..-..... ...++|+|
T Consensus 152 ~t~e~~~~~a~~l~~~Gad~--I~IkDtaGll~P~~~--~~LV~~Lk~~~~~~ipI~~H~Hnt~GlA~An~laAieAGad 227 (499)
T PRK12330 152 HTVEGFVEQAKRLLDMGADS--ICIKDMAALLKPQPA--YDIVKGIKEACGEDTRINLHCHSTTGVTLVSLMKAIEAGVD 227 (499)
T ss_pred CCHHHHHHHHHHHHHcCCCE--EEeCCCccCCCHHHH--HHHHHHHHHhCCCCCeEEEEeCCCCCcHHHHHHHHHHcCCC
Confidence 35666777788899999999 66777 66666533 377999998875 899999987654333322 23578999
Q ss_pred eE
Q psy11600 90 QY 91 (277)
Q Consensus 90 ~i 91 (277)
++
T Consensus 228 ~v 229 (499)
T PRK12330 228 VV 229 (499)
T ss_pred EE
Confidence 98
No 372
>PRK07360 FO synthase subunit 2; Reviewed
Probab=81.98 E-value=29 Score=33.07 Aligned_cols=72 Identities=14% Similarity=0.348 Sum_probs=47.2
Q ss_pred cCcccHHHHHHHHHHcCCCEEEEeccccccccCCC---CCHHHHHHHHhcCCCCeeeeeeec------------cCcHHh
Q psy11600 15 SDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLT---FGHPVVKCLRNKIPKAFFETHMMV------------QNPQQW 79 (277)
Q Consensus 15 ~d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~---~g~~~v~~l~~~~~~~~~d~Hlmv------------~~p~~~ 79 (277)
.+...+.+..+.+.+.|+..+|+ .-| .-|+.. +=.++++.+|+.+|++ .+|.+. ....+.
T Consensus 91 ls~eeI~~~a~~a~~~G~~~i~l--~~G-~~p~~~~~e~~~~~i~~ik~~~~~i--~i~a~s~~ei~~~~~~~G~~~~e~ 165 (371)
T PRK07360 91 LTIAEILEKAAEAVKRGATEVCI--QGG-LHPAADSLEFYLEILEAIKEEFPDI--HLHAFSPMEVYFAAREDGLSYEEV 165 (371)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEE--ccC-CCCCCCcHHHHHHHHHHHHHhCCCc--ceeeCCHHHHHHHHhhcCCCHHHH
Confidence 45566777788888999999554 555 345543 2246788888765553 333221 123566
Q ss_pred HHHHHhcCCCeE
Q psy11600 80 IEPMADANVDQY 91 (277)
Q Consensus 80 i~~l~~ag~d~i 91 (277)
++.|.+||++.+
T Consensus 166 l~~LkeAGld~~ 177 (371)
T PRK07360 166 LKALKDAGLDSM 177 (371)
T ss_pred HHHHHHcCCCcC
Confidence 899999999998
No 373
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=81.71 E-value=4.1 Score=37.92 Aligned_cols=71 Identities=21% Similarity=0.165 Sum_probs=41.6
Q ss_pred hhhHHHHHhhCCCccEEEeCCCCcCcHHH---HHHccCCC-CCcccccCHHHHHHHHHhh-CCCCeEEEeCCCCccCHHH
Q psy11600 200 MPKVKWLRENYPTLNIEVDGGVGPNTIDE---CAKCLTGF-GGQKFMQDMMPKVKWLREN-YPTLNIEVDGGVGPNTIDE 274 (277)
Q Consensus 200 l~kI~~l~~~~~~~~i~vdGgV~~~tv~~---~~~~gpg~-ggq~F~~~~~~kI~~l~~~-~~~~~I~VDGGI~~~~~~~ 274 (277)
.+.++.++...+...|+| .++|.++ ..++|++. =--.|. .+.++++.+. ..+..|++-||||.+|+++
T Consensus 196 ~~av~~~r~~~~~~kIeV----Ev~sleea~ea~~~gaDiI~LDn~s---~e~~~~av~~~~~~~~ieaSGGI~~~ni~~ 268 (296)
T PRK09016 196 RQAVEKAFWLHPDVPVEV----EVENLDELDQALKAGADIIMLDNFT---TEQMREAVKRTNGRALLEVSGNVTLETLRE 268 (296)
T ss_pred HHHHHHHHHhCCCCCEEE----EeCCHHHHHHHHHcCCCEEEeCCCC---hHHHHHHHHhhcCCeEEEEECCCCHHHHHH
Confidence 345666666665544443 3445554 45566663 112222 3444444332 3467899999999999998
Q ss_pred hhC
Q psy11600 275 CAK 277 (277)
Q Consensus 275 ~~~ 277 (277)
+++
T Consensus 269 yA~ 271 (296)
T PRK09016 269 FAE 271 (296)
T ss_pred HHh
Confidence 763
No 374
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=81.67 E-value=13 Score=34.29 Aligned_cols=80 Identities=16% Similarity=0.263 Sum_probs=55.3
Q ss_pred HHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEEeccCCCCCHHHHHHHHhhCCC--cccc----hhhhhHH
Q psy11600 52 HPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMK--VGQV----LQDWIEP 125 (277)
Q Consensus 52 ~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~H~e~~d~g~~~i~~i~~~~~~--~~d~----p~~~i~~ 125 (277)
.+.++..|+..+.- .-+-+-+.++++ +....++|+||+-+ | ..+++.++++++.... ++.+ -.+-+++
T Consensus 175 ~~~v~~aR~~~~~~-~~Igvsv~tlee-a~~A~~~gaDyI~l--D--~~~~e~l~~~~~~~~~~i~i~AiGGIt~~ni~~ 248 (277)
T PRK08072 175 TKAVTSVREKLGHM-VKIEVETETEEQ-VREAVAAGADIIMF--D--NRTPDEIREFVKLVPSAIVTEASGGITLENLPA 248 (277)
T ss_pred HHHHHHHHHhCCCC-CEEEEEeCCHHH-HHHHHHcCCCEEEE--C--CCCHHHHHHHHHhcCCCceEEEECCCCHHHHHH
Confidence 35677888765521 224444556654 55567899999955 4 3678889988876543 3333 6788899
Q ss_pred HHhcCCCeEEee
Q psy11600 126 MADANVDQYTFH 137 (277)
Q Consensus 126 ~~~~g~d~it~H 137 (277)
++++|+|.|++-
T Consensus 249 ~a~~Gvd~IAvg 260 (277)
T PRK08072 249 YGGTGVDYISLG 260 (277)
T ss_pred HHHcCCCEEEEC
Confidence 999999999884
No 375
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=81.64 E-value=3.4 Score=36.38 Aligned_cols=60 Identities=13% Similarity=-0.007 Sum_probs=45.1
Q ss_pred CcHHhHHHHHhcCCCeEEEeccCCCC-----CHHHHHHHHhhCCCcccc-----hhhhhHHHHhcCCCeEEe
Q psy11600 75 NPQQWIEPMADANVDQYTFHVEPVDN-----VPQVIRQIKEAGMKVGQV-----LQDWIEPMADANVDQYTF 136 (277)
Q Consensus 75 ~p~~~i~~l~~ag~d~i~~H~e~~d~-----g~~~i~~i~~~~~~~~d~-----p~~~i~~~~~~g~d~it~ 136 (277)
....|.......|.+++ |+|..+| .+++++.+|+.+..|+.+ -.+.++.+.++|||.+.+
T Consensus 135 ~~~~~a~aa~~~G~~~i--~Le~~sGa~~~v~~e~i~~Vk~~~~~Pv~vGGGIrs~e~a~~l~~~GAD~VVV 204 (205)
T TIGR01769 135 IAAAYCLAAKYFGMKWV--YLEAGSGASYPVNPETISLVKKASGIPLIVGGGIRSPEIAYEIVLAGADAIVT 204 (205)
T ss_pred HHHHHHHHHHHcCCCEE--EEEcCCCCCCCCCHHHHHHHHHhhCCCEEEeCCCCCHHHHHHHHHcCCCEEEe
Confidence 34445666667799999 7777554 699999999998777766 355667788889998754
No 376
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=81.40 E-value=44 Score=30.69 Aligned_cols=123 Identities=20% Similarity=0.302 Sum_probs=75.1
Q ss_pred ceEeeeccccCcc--cHHHHHHHHHHcCCCEEEEe------ccccccc---------cCCCC--CHHHHHHHHhcCCCCe
Q psy11600 6 CMIGPSILNSDLS--NLHSESQNLLDSGADYLHLD------VMDGTFV---------PNLTF--GHPVVKCLRNKIPKAF 66 (277)
Q Consensus 6 ~~~~~s~~~~d~~--~l~~~~~~l~~~~~~~~h~D------imDg~fv---------p~~~~--g~~~v~~l~~~~~~~~ 66 (277)
+.+.|=+.+.|+. ...+-++.|.+.|+|.+-+= +.||+.+ .+++. -.+.++.+|+..+++|
T Consensus 17 ~a~i~yit~GdP~~e~s~e~i~~L~~~GaD~iELGvPfSDPvADGP~Iq~A~~rAL~~g~t~~~~lel~~~~r~~~~~~P 96 (265)
T COG0159 17 GALIPYVTAGDPDLETSLEIIKTLVEAGADILELGVPFSDPVADGPTIQAAHLRALAAGVTLEDTLELVEEIRAKGVKVP 96 (265)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHhCCCCEEEecCCCCCcCccCHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCCCC
Confidence 4577888888754 55567777889999997664 3666653 12232 2467888887778888
Q ss_pred eeeeeeccCc------HHhHHHHHhcCCCeEEEeccC-CCCCHHHHHHHHhhCCCcccc-----hhhhhHHHHhcC
Q psy11600 67 FETHMMVQNP------QQWIEPMADANVDQYTFHVEP-VDNVPQVIRQIKEAGMKVGQV-----LQDWIEPMADAN 130 (277)
Q Consensus 67 ~d~Hlmv~~p------~~~i~~l~~ag~d~i~~H~e~-~d~g~~~i~~i~~~~~~~~d~-----p~~~i~~~~~~g 130 (277)
+-. |...|| +++++.+.++|+|-+.+- |. .+....+.+..+++...++.. |.++++..++..
T Consensus 97 ivl-m~Y~Npi~~~Gie~F~~~~~~~GvdGlivp-DLP~ee~~~~~~~~~~~gi~~I~lvaPtt~~~rl~~i~~~a 170 (265)
T COG0159 97 IVL-MTYYNPIFNYGIEKFLRRAKEAGVDGLLVP-DLPPEESDELLKAAEKHGIDPIFLVAPTTPDERLKKIAEAA 170 (265)
T ss_pred EEE-EEeccHHHHhhHHHHHHHHHHcCCCEEEeC-CCChHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhC
Confidence 766 555676 445778889999987432 32 122333444444444333221 455555555554
No 377
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=81.02 E-value=10 Score=35.99 Aligned_cols=86 Identities=15% Similarity=0.122 Sum_probs=59.5
Q ss_pred HHHHHHHhcCCCCeeeeeeeccCc-----HHhHHHHHhcCCCeEEEeccCC-----CC---CH----HHHHHHHhhCCCc
Q psy11600 53 PVVKCLRNKIPKAFFETHMMVQNP-----QQWIEPMADANVDQYTFHVEPV-----DN---VP----QVIRQIKEAGMKV 115 (277)
Q Consensus 53 ~~v~~l~~~~~~~~~d~Hlmv~~p-----~~~i~~l~~ag~d~i~~H~e~~-----d~---g~----~~i~~i~~~~~~~ 115 (277)
+.++.+|+..|+.|+-+-|.+..+ ++..+.....++|.+.+|+... .. .. +.|+++++..+.|
T Consensus 109 ~~~~~vr~~~p~~p~~aNl~~~~~~~~~~~~~~~~~~~~~adal~l~l~~~qe~~~p~g~~~f~~~le~i~~i~~~~~vP 188 (352)
T PRK05437 109 DSFSVVRKVAPDGLLFANLGAVQLYGYGVEEAQRAVEMIEADALQIHLNPLQELVQPEGDRDFRGWLDNIAEIVSALPVP 188 (352)
T ss_pred HHHHHHHHHCCCceEEeecCccccCCCCHHHHHHHHHhcCCCcEEEeCccchhhcCCCCcccHHHHHHHHHHHHHhhCCC
Confidence 345667776578998888877655 4555566667899999998441 11 12 5677787776555
Q ss_pred ccc-------hhhhhHHHHhcCCCeEEeec
Q psy11600 116 GQV-------LQDWIEPMADANVDQYTFHV 138 (277)
Q Consensus 116 ~d~-------p~~~i~~~~~~g~d~it~H~ 138 (277)
+-+ ..+.++.+.++|+|.|.++-
T Consensus 189 VivK~~g~g~s~~~a~~l~~~Gvd~I~Vsg 218 (352)
T PRK05437 189 VIVKEVGFGISKETAKRLADAGVKAIDVAG 218 (352)
T ss_pred EEEEeCCCCCcHHHHHHHHHcCCCEEEECC
Confidence 543 45677888899999999864
No 378
>PRK08575 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional
Probab=80.89 E-value=38 Score=31.72 Aligned_cols=74 Identities=8% Similarity=0.103 Sum_probs=41.9
Q ss_pred HHHHHHHHHHcCCCEEEEecccccc-ccCCC-----CCHHHHHHHHhcCCCCeeeeeeeccCc-HHhHHHHHhcCCCeEE
Q psy11600 20 LHSESQNLLDSGADYLHLDVMDGTF-VPNLT-----FGHPVVKCLRNKIPKAFFETHMMVQNP-QQWIEPMADANVDQYT 92 (277)
Q Consensus 20 l~~~~~~l~~~~~~~~h~DimDg~f-vp~~~-----~g~~~v~~l~~~~~~~~~d~Hlmv~~p-~~~i~~l~~ag~d~i~ 92 (277)
|.++++.|.+ |++|+++| |-.+ +-.+. .+.+.++.+.+.. +.++.+|..-..+ ...++.+.+..+|.+
T Consensus 163 l~~e~~~L~~-G~~~IQiD--EP~L~~~~~~~~~~~~~~~a~~~~~~~~-~~~i~l~tyfg~~~~~~~~~l~~~~vd~l- 237 (326)
T PRK08575 163 VNSLIKELSS-VVDAVEIH--EPSIFAKGIKRDTLEKLPEVYKTMAKNV-NIEKHLMTYFEINNLKRLDILFSLPVTYF- 237 (326)
T ss_pred HHHHHHHHHc-CCCEEEec--CcceeCCCCCHHHHHHHHHHHHHHHhcC-CCCEEEECCCCCccccHHHHHhcCCCcEE-
Confidence 3456666666 99999888 3223 21211 1223444444432 3445444443332 236888889999999
Q ss_pred EeccCCC
Q psy11600 93 FHVEPVD 99 (277)
Q Consensus 93 ~H~e~~d 99 (277)
|+|...
T Consensus 238 -~ld~~~ 243 (326)
T PRK08575 238 -GIDVIE 243 (326)
T ss_pred -EEEecC
Confidence 777654
No 379
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=80.86 E-value=26 Score=32.54 Aligned_cols=118 Identities=14% Similarity=0.139 Sum_probs=68.6
Q ss_pred CcccHHHHHHHHHHcCCCEEEEeccccccccCCC-------CC-HHHHHHHH---hc--CCCCeeeee---eeccCcHHh
Q psy11600 16 DLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLT-------FG-HPVVKCLR---NK--IPKAFFETH---MMVQNPQQW 79 (277)
Q Consensus 16 d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~-------~g-~~~v~~l~---~~--~~~~~~d~H---lmv~~p~~~ 79 (277)
+..|..+.+++++++|+--+|+ -|..|-+.-+ .. .+.++.|| +. -+++.+-+= +.....++-
T Consensus 91 ~~~~v~r~V~~~~~aGaagi~I--EDq~~pK~cg~~~~~~lv~~ee~~~kI~Aa~~a~~~~d~~IiARTDa~~~~g~deA 168 (292)
T PRK11320 91 GAFNIARTVKSMIKAGAAAVHI--EDQVGAKRCGHRPNKEIVSQEEMVDRIKAAVDARTDPDFVIMARTDALAVEGLDAA 168 (292)
T ss_pred CHHHHHHHHHHHHHcCCeEEEE--ecCCCccccCCCCCCcccCHHHHHHHHHHHHHhccCCCeEEEEecCcccccCHHHH
Confidence 5557888899999999999887 3432210000 01 13344443 21 123322111 011123333
Q ss_pred ---HHHHHhcCCCeEEEeccCCCCCHHHHHHHHhhCCCcc--cc------hhhhhHHHHhcCCCeEEeec
Q psy11600 80 ---IEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVG--QV------LQDWIEPMADANVDQYTFHV 138 (277)
Q Consensus 80 ---i~~l~~ag~d~i~~H~e~~d~g~~~i~~i~~~~~~~~--d~------p~~~i~~~~~~g~d~it~H~ 138 (277)
.+.+.++|||.+.+|. .. .+..++.+.+....|+ .+ |..=+++|.++|+..+++..
T Consensus 169 I~Ra~aY~eAGAD~ifi~~--~~-~~~~i~~~~~~~~~Pl~~n~~~~~~~p~~s~~~L~~lGv~~v~~~~ 235 (292)
T PRK11320 169 IERAQAYVEAGADMIFPEA--MT-ELEMYRRFADAVKVPILANITEFGATPLFTTEELASAGVAMVLYPL 235 (292)
T ss_pred HHHHHHHHHcCCCEEEecC--CC-CHHHHHHHHHhcCCCEEEEeccCCCCCCCCHHHHHHcCCcEEEECh
Confidence 4567789999997764 22 3566777766555555 22 33458899999999999965
No 380
>PF01645 Glu_synthase: Conserved region in glutamate synthase; InterPro: IPR002932 Ferredoxin-dependent glutamate synthases have been implicated in a number of functions including photorespiration in Arabidopsis where they may also play a role in primary nitrogen assimilation in roots []. This region is expressed as a seperate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.; GO: 0015930 glutamate synthase activity, 0016638 oxidoreductase activity, acting on the CH-NH2 group of donors, 0006537 glutamate biosynthetic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.
Probab=80.82 E-value=5.2 Score=38.40 Aligned_cols=81 Identities=16% Similarity=0.129 Sum_probs=50.5
Q ss_pred HHHHHHHhcCCCCeeeeeeeccCcHHhHHH-HHhcCCCeEEEeccCCCC-------------CHHHHHHHHhh-------
Q psy11600 53 PVVKCLRNKIPKAFFETHMMVQNPQQWIEP-MADANVDQYTFHVEPVDN-------------VPQVIRQIKEA------- 111 (277)
Q Consensus 53 ~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~-l~~ag~d~i~~H~e~~d~-------------g~~~i~~i~~~------- 111 (277)
..|.+||+..+.+|+-+=+.+.++.+.+.. ..++|+|+|| +|-.+| |..++..+++.
T Consensus 192 ~~I~~Lr~~~~~~pVgvKl~~~~~~~~~~~~~~~ag~D~It--IDG~~GGTGAap~~~~d~~GlP~~~~l~~a~~~L~~~ 269 (368)
T PF01645_consen 192 QLIEELRELNPGKPVGVKLVAGRGVEDIAAGAAKAGADFIT--IDGAEGGTGAAPLTSMDHVGLPTEYALARAHQALVKN 269 (368)
T ss_dssp HHHHHHHHH-TTSEEEEEEE-STTHHHHHHHHHHTT-SEEE--EE-TT---SSEECCHHHHC---HHHHHHHHHHHHHCT
T ss_pred HHHHHHHhhCCCCcEEEEECCCCcHHHHHHhhhhccCCEEE--EeCCCCCCCCCchhHHhhCCCcHHHHHHHHHHHHHHc
Confidence 678999998779999999999999998777 7889999994 444333 43344444332
Q ss_pred C-CCcccc--------hhhhhHHHHhcCCCeEEe
Q psy11600 112 G-MKVGQV--------LQDWIEPMADANVDQYTF 136 (277)
Q Consensus 112 ~-~~~~d~--------p~~~i~~~~~~g~d~it~ 136 (277)
. ...+.+ |.+.++.++ +|||.+.+
T Consensus 270 glr~~V~Li~sGgl~t~~dv~kala-LGAD~v~i 302 (368)
T PF01645_consen 270 GLRDRVSLIASGGLRTGDDVAKALA-LGADAVYI 302 (368)
T ss_dssp T-CCCSEEEEESS--SHHHHHHHHH-CT-SEEE-
T ss_pred CCCCceEEEEeCCccCHHHHHHHHh-cCCCeeEe
Confidence 2 112222 777776654 79999988
No 381
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=80.82 E-value=1.8 Score=40.27 Aligned_cols=68 Identities=13% Similarity=0.041 Sum_probs=38.1
Q ss_pred HHHHHhhCCCccEEEeCCCCcCcHHHH---HHccCCC-CCcccccCHHHHHHHHHhh-CCCCeEEEeCCCCccCHHHhhC
Q psy11600 203 VKWLRENYPTLNIEVDGGVGPNTIDEC---AKCLTGF-GGQKFMQDMMPKVKWLREN-YPTLNIEVDGGVGPNTIDECAK 277 (277)
Q Consensus 203 I~~l~~~~~~~~i~vdGgV~~~tv~~~---~~~gpg~-ggq~F~~~~~~kI~~l~~~-~~~~~I~VDGGI~~~~~~~~~~ 277 (277)
++.++++.+...|+| .++|.+++ .++|++. =--.|.+ +.+++..+. ..+..+++-||||++|++.+++
T Consensus 196 v~~~r~~~~~~kIeV----Evetleea~eA~~aGaDiImLDnmsp---e~l~~av~~~~~~~~lEaSGGIt~~ni~~yA~ 268 (294)
T PRK06978 196 LDAAFALNAGVPVQI----EVETLAQLETALAHGAQSVLLDNFTL---DMMREAVRVTAGRAVLEVSGGVNFDTVRAFAE 268 (294)
T ss_pred HHHHHHhCCCCcEEE----EcCCHHHHHHHHHcCCCEEEECCCCH---HHHHHHHHhhcCCeEEEEECCCCHHHHHHHHh
Confidence 444444433333443 34555554 5566663 1123333 444443332 2367899999999999988763
No 382
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=80.71 E-value=4.1 Score=37.38 Aligned_cols=73 Identities=21% Similarity=0.302 Sum_probs=45.4
Q ss_pred hhhHHHHHhhCCCccEEEeCCCCcCcHHHH---HHccCCC-CCcccccCHHHHHHH-HHhhCCCCeEEEeCCCCccCHHH
Q psy11600 200 MPKVKWLRENYPTLNIEVDGGVGPNTIDEC---AKCLTGF-GGQKFMQDMMPKVKW-LRENYPTLNIEVDGGVGPNTIDE 274 (277)
Q Consensus 200 l~kI~~l~~~~~~~~i~vdGgV~~~tv~~~---~~~gpg~-ggq~F~~~~~~kI~~-l~~~~~~~~I~VDGGI~~~~~~~ 274 (277)
.+.++.+++..+...+.| ...|.+++ .++|+++ +=..|.+..+++..+ +++..++..+++=||||++|+.+
T Consensus 171 ~~av~~~R~~~~~~~IgV----ev~t~eea~~A~~~gaD~I~ld~~~p~~l~~~~~~~~~~~~~i~i~AsGGI~~~ni~~ 246 (272)
T cd01573 171 LKALARLRATAPEKKIVV----EVDSLEEALAAAEAGADILQLDKFSPEELAELVPKLRSLAPPVLLAAAGGINIENAAA 246 (272)
T ss_pred HHHHHHHHHhCCCCeEEE----EcCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhccCCCceEEEECCCCHHHHHH
Confidence 345666666666554443 46677665 4466775 223455544444433 44444578899999999999988
Q ss_pred hh
Q psy11600 275 CA 276 (277)
Q Consensus 275 ~~ 276 (277)
++
T Consensus 247 ~~ 248 (272)
T cd01573 247 YA 248 (272)
T ss_pred HH
Confidence 75
No 383
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=80.69 E-value=20 Score=33.19 Aligned_cols=128 Identities=15% Similarity=0.138 Sum_probs=92.6
Q ss_pred eeccccCcccHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeee-----------------ee
Q psy11600 10 PSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETH-----------------MM 72 (277)
Q Consensus 10 ~s~~~~d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~H-----------------lm 72 (277)
|=.+..|-..-.+.+.+..+.|.+++-+|--.-+|-.|+..--++++.-+.. ++.+++= -.
T Consensus 79 PV~lHLDHg~~~e~i~~ai~~GftSVMiDgS~lp~eeNi~~T~~vv~~Ah~~--gv~VEaElG~vgg~e~~~~~~~~~~~ 156 (288)
T TIGR00167 79 PVALHLDHGASEEDCAQAVKAGFSSVMIDGSHEPFEENIELTKKVVERAHKM--GVSVEAELGTLGGEEDGVSVADESAL 156 (288)
T ss_pred cEEEECCCCCCHHHHHHHHHcCCCEEEecCCCCCHHHHHHHHHHHHHHHHHc--CCEEEEEEeeccCccCCccccccccc
Confidence 4456677776667788888889999999877777777877777777766643 4444332 22
Q ss_pred ccCcHHhHHHHHhcCCCeEEEeccCCCC---------CHHHHHHHHhhCCCcccc------hhhhhHHHHhcCCCeEEee
Q psy11600 73 VQNPQQWIEPMADANVDQYTFHVEPVDN---------VPQVIRQIKEAGMKVGQV------LQDWIEPMADANVDQYTFH 137 (277)
Q Consensus 73 v~~p~~~i~~l~~ag~d~i~~H~e~~d~---------g~~~i~~i~~~~~~~~d~------p~~~i~~~~~~g~d~it~H 137 (277)
..+|++..+.+.+.|+|.+.+=+-..-| -++.++.|++....|+-+ |++-+...+++|+.-|-+.
T Consensus 157 ~T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~p~~Ld~~~L~~I~~~v~vPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~ 236 (288)
T TIGR00167 157 YTDPEEAKEFVKLTGVDSLAAAIGNVHGVYKGEPKGLDFERLEEIQKYVNLPLVLHGGSGIPDEEIKKAISLGVVKVNID 236 (288)
T ss_pred CCCHHHHHHHHhccCCcEEeeccCccccccCCCCCccCHHHHHHHHHHhCCCEEEeCCCCCCHHHHHHHHHcCCeEEEcC
Confidence 4578877777777899999766543222 467889998887666533 8888999999999999887
Q ss_pred cC
Q psy11600 138 VE 139 (277)
Q Consensus 138 ~E 139 (277)
.|
T Consensus 237 T~ 238 (288)
T TIGR00167 237 TE 238 (288)
T ss_pred hH
Confidence 65
No 384
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=80.59 E-value=5.3 Score=36.57 Aligned_cols=74 Identities=18% Similarity=0.265 Sum_probs=52.8
Q ss_pred CcccHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHH--HHhcCCCeE
Q psy11600 16 DLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEP--MADANVDQY 91 (277)
Q Consensus 16 d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~--l~~ag~d~i 91 (277)
|...+.+..+.+.+.|++.+.+==+-|...|.-. .+.++.+|+.+|++++.+|.=-..-...... ..++|++++
T Consensus 147 ~~~~~~~~~~~~~~~Ga~~i~l~DT~G~~~P~~v--~~lv~~l~~~~~~~~i~~H~Hnd~GlA~AN~laA~~aGa~~i 222 (274)
T cd07938 147 PPERVAEVAERLLDLGCDEISLGDTIGVATPAQV--RRLLEAVLERFPDEKLALHFHDTRGQALANILAALEAGVRRF 222 (274)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCCccCHHHH--HHHHHHHHHHCCCCeEEEEECCCCChHHHHHHHHHHhCCCEE
Confidence 5566777888889999999444333377777633 3678899988888999999877654433332 346899988
No 385
>PRK09454 ugpQ cytoplasmic glycerophosphodiester phosphodiesterase; Provisional
Probab=80.41 E-value=12 Score=33.49 Aligned_cols=85 Identities=15% Similarity=0.189 Sum_probs=56.3
Q ss_pred CCCCHHHHHHHHhcCCCCeeeeeeecc-CcHHhHHHHHhcCCCeEEEeccCCCCCHHHHHHHHhhCCCcc--cc-hhhhh
Q psy11600 48 LTFGHPVVKCLRNKIPKAFFETHMMVQ-NPQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVG--QV-LQDWI 123 (277)
Q Consensus 48 ~~~g~~~v~~l~~~~~~~~~d~Hlmv~-~p~~~i~~l~~ag~d~i~~H~e~~d~g~~~i~~i~~~~~~~~--d~-p~~~i 123 (277)
.+|.+..++.+|+..|+++.-. ++. .+..+...+.+.++..+ |.+.....+.+++.+++.+..++ .+ -..-+
T Consensus 148 ~SF~~~~l~~l~~~~p~~~~~~--l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~v~~~~~~g~~v~~WTvn~~~~~ 223 (249)
T PRK09454 148 SSFSEDALEAARQAAPELPRGL--LLDEWPDDWLELTRRLGCVSL--HLNHKLLDEARVAALKAAGLRILVYTVNDPARA 223 (249)
T ss_pred EeCCHHHHHHHHHhCCCCcEEE--EeccccccHHHHHHhcCCeEE--ecccccCCHHHHHHHHHCCCEEEEEeCCCHHHH
Confidence 4689999999999888866433 222 23344455556677767 54433335889999998876633 33 23456
Q ss_pred HHHHhcCCCeEEe
Q psy11600 124 EPMADANVDQYTF 136 (277)
Q Consensus 124 ~~~~~~g~d~it~ 136 (277)
+.+.+.|+|.|+-
T Consensus 224 ~~l~~~GVdgIiT 236 (249)
T PRK09454 224 RELLRWGVDCICT 236 (249)
T ss_pred HHHHHcCCCEEEe
Confidence 7888889998775
No 386
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=80.40 E-value=30 Score=32.97 Aligned_cols=118 Identities=16% Similarity=0.092 Sum_probs=72.5
Q ss_pred cCcccHHHHHHHHHHcCCCEEEEec---------cc---ccccc------------------------C--CCCCHHHHH
Q psy11600 15 SDLSNLHSESQNLLDSGADYLHLDV---------MD---GTFVP------------------------N--LTFGHPVVK 56 (277)
Q Consensus 15 ~d~~~l~~~~~~l~~~~~~~~h~Di---------mD---g~fvp------------------------~--~~~g~~~v~ 56 (277)
-|.....+.+++.+++|+..+=+.+ -| |--.| . -.+..+.++
T Consensus 135 ~d~~~~~~ll~rA~~aG~~alvlTvD~p~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 214 (351)
T cd04737 135 KDDGFNRSLLDRAKAAGAKAIILTADATVGGNREADIRNKFQFPFGMPNLNHFSEGTGKGKGISEIYAAAKQKLSPADIE 214 (351)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCCCCCcchHHHHhcCCCCcccchhhhhccccccCcchhhhhhhccCCCCHHHHH
Confidence 3666777788888888877666655 00 00001 0 024678899
Q ss_pred HHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEE--eccC-CCCCHH---HHHHHHhhC--CCcccc------hhhh
Q psy11600 57 CLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTF--HVEP-VDNVPQ---VIRQIKEAG--MKVGQV------LQDW 122 (277)
Q Consensus 57 ~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~--H~e~-~d~g~~---~i~~i~~~~--~~~~d~------p~~~ 122 (277)
++|+. +++|+-+=- +.++ +..+.+.++|+|.|.+ |--- .|+++. .+.++++.. +.++-. ..+.
T Consensus 215 ~lr~~-~~~PvivKg-v~~~-~dA~~a~~~G~d~I~vsnhGGr~ld~~~~~~~~l~~i~~a~~~~i~vi~dGGIr~g~Di 291 (351)
T cd04737 215 FIAKI-SGLPVIVKG-IQSP-EDADVAINAGADGIWVSNHGGRQLDGGPASFDSLPEIAEAVNHRVPIIFDSGVRRGEHV 291 (351)
T ss_pred HHHHH-hCCcEEEec-CCCH-HHHHHHHHcCCCEEEEeCCCCccCCCCchHHHHHHHHHHHhCCCCeEEEECCCCCHHHH
Confidence 99985 778877652 3444 5677889999999988 6321 244443 344444333 223221 6777
Q ss_pred hHHHHhcCCCeEEe
Q psy11600 123 IEPMADANVDQYTF 136 (277)
Q Consensus 123 i~~~~~~g~d~it~ 136 (277)
++.++ +||+.+.+
T Consensus 292 ~kaLa-lGA~~V~i 304 (351)
T cd04737 292 FKALA-SGADAVAV 304 (351)
T ss_pred HHHHH-cCCCEEEE
Confidence 77777 88887776
No 387
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=80.34 E-value=12 Score=34.66 Aligned_cols=79 Identities=14% Similarity=0.190 Sum_probs=53.4
Q ss_pred HHHHHHHHhcCC-CCeeeeeeeccCcHHhHHHHHhcCCCeEEEeccCCCCCHHHHHHHHhhC--CCcccc----hhhhhH
Q psy11600 52 HPVVKCLRNKIP-KAFFETHMMVQNPQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAG--MKVGQV----LQDWIE 124 (277)
Q Consensus 52 ~~~v~~l~~~~~-~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~H~e~~d~g~~~i~~i~~~~--~~~~d~----p~~~i~ 124 (277)
...++++|++.| ..++. .-|.+++ ++....++|+|.| .+|-|+ |+.+++.-+.- ..++.+ ..+-++
T Consensus 181 ~~ai~~~r~~~~~~~kIe--VEv~tle-ea~ea~~~gaDiI--~LDn~s--~e~l~~av~~~~~~~~leaSGGI~~~ni~ 253 (281)
T PRK06106 181 REAIRRARAGVGHLVKIE--VEVDTLD-QLEEALELGVDAV--LLDNMT--PDTLREAVAIVAGRAITEASGRITPETAP 253 (281)
T ss_pred HHHHHHHHHhCCCCCcEE--EEeCCHH-HHHHHHHcCCCEE--EeCCCC--HHHHHHHHHHhCCCceEEEECCCCHHHHH
Confidence 478888998765 23333 3455776 4556678999999 777665 55555544432 224444 678899
Q ss_pred HHHhcCCCeEEee
Q psy11600 125 PMADANVDQYTFH 137 (277)
Q Consensus 125 ~~~~~g~d~it~H 137 (277)
.+++.|+|+|+.-
T Consensus 254 ~yA~tGVD~Is~G 266 (281)
T PRK06106 254 AIAASGVDLISVG 266 (281)
T ss_pred HHHhcCCCEEEeC
Confidence 9999999999974
No 388
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=80.28 E-value=25 Score=31.16 Aligned_cols=100 Identities=13% Similarity=-0.049 Sum_probs=58.0
Q ss_pred HHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcC-CCCeeeeeeeccCcHHhHHHHHhcCCCeEEEe-ccC----
Q psy11600 24 SQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKI-PKAFFETHMMVQNPQQWIEPMADANVDQYTFH-VEP---- 97 (277)
Q Consensus 24 ~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~-~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~H-~e~---- 97 (277)
++...+.|+|-+|+-=-|.. +...|+.. ++. -+..-+.+-.+......+.|+||+.|= +..
T Consensus 80 ~dlA~~~~adGVHLg~~d~~-----------~~~~r~~~~~~~--iiG~s~~~s~~~a~~A~~~gaDYv~~Gpv~t~tK~ 146 (221)
T PRK06512 80 SRIAGRVKADGLHIEGNLAA-----------LAEAIEKHAPKM--IVGFGNLRDRHGAMEIGELRPDYLFFGKLGADNKP 146 (221)
T ss_pred HHHHHHhCCCEEEECccccC-----------HHHHHHhcCCCC--EEEecCCCCHHHHHHhhhcCCCEEEECCCCCCCCC
Confidence 34444556677776433321 34555442 333 233333344444555567899999873 211
Q ss_pred --CCCCHHHHHHHHhhCCCcccc----hhhhhHHHHhcCCCeEEe
Q psy11600 98 --VDNVPQVIRQIKEAGMKVGQV----LQDWIEPMADANVDQYTF 136 (277)
Q Consensus 98 --~d~g~~~i~~i~~~~~~~~d~----p~~~i~~~~~~g~d~it~ 136 (277)
...|...++++++....|+-. -.+-++.+.++|++.|.+
T Consensus 147 ~~~p~gl~~l~~~~~~~~iPvvAIGGI~~~n~~~~~~~GA~giAv 191 (221)
T PRK06512 147 EAHPRNLSLAEWWAEMIEIPCIVQAGSDLASAVEVAETGAEFVAL 191 (221)
T ss_pred CCCCCChHHHHHHHHhCCCCEEEEeCCCHHHHHHHHHhCCCEEEE
Confidence 112777888887776666543 466677788888888876
No 389
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=80.19 E-value=12 Score=37.48 Aligned_cols=45 Identities=22% Similarity=0.292 Sum_probs=27.5
Q ss_pred cHHHHHHHHHHcC--CCEEEEeccccccccCCC--CCHHHHHHHHhcCCC
Q psy11600 19 NLHSESQNLLDSG--ADYLHLDVMDGTFVPNLT--FGHPVVKCLRNKIPK 64 (277)
Q Consensus 19 ~l~~~~~~l~~~~--~~~~h~DimDg~fvp~~~--~g~~~v~~l~~~~~~ 64 (277)
.....++.|++.| +|.+-+=+|+|+|. .+. +-.++++.+.+.+++
T Consensus 119 q~~~rl~~l~~~g~~~~kvE~i~~GGTft-~l~~~y~~~fl~~~~~a~~~ 167 (522)
T TIGR01211 119 QVTARLEQLEQIGHPVDKVELIIMGGTFP-ARDLDYQEWFIKRCLNAMNG 167 (522)
T ss_pred HHHHHHHHHHHhCCCCceEEEEEECCCcc-cCCHHHHHHHHHHHHHHhcc
Confidence 3445677888766 44555569999995 111 234566666665544
No 390
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=80.17 E-value=6.1 Score=37.90 Aligned_cols=115 Identities=12% Similarity=0.104 Sum_probs=69.1
Q ss_pred HHHHHHHHcCCCEEEEeccc-cc----c----------------ccCCCCCHHHHHHHHhcCC-CCeeeeeeecc-----
Q psy11600 22 SESQNLLDSGADYLHLDVMD-GT----F----------------VPNLTFGHPVVKCLRNKIP-KAFFETHMMVQ----- 74 (277)
Q Consensus 22 ~~~~~l~~~~~~~~h~DimD-g~----f----------------vp~~~~g~~~v~~l~~~~~-~~~~d~Hlmv~----- 74 (277)
+.-++++++|.|.+-+---- |- | -....|-.++|+.+|+..+ +.++-+-+-..
T Consensus 154 ~AA~ra~~AGfDgVEih~ah~GyLl~qFLSp~~N~RtDeyGGslenR~rf~~eii~~vr~~~g~~f~v~vri~~~~~~~~ 233 (382)
T cd02931 154 ESAVIAKEAGFDGVEIHAVHEGYLLDQFTISLFNKRTDKYGGSLENRLRFAIEIVEEIKARCGEDFPVSLRYSVKSYIKD 233 (382)
T ss_pred HHHHHHHHcCCCEEEEeccccChHHHHhcCCccCCCCCcCCCCHHHHhHHHHHHHHHHHHhcCCCceEEEEEechhhccc
Confidence 44456778899994332222 21 2 2223455689999999864 55666655421
Q ss_pred ----------------CcH---HhHHHHHhcCCCeEEEeccCC----------CC--C--HHHHHHHHhhCCCcccc---
Q psy11600 75 ----------------NPQ---QWIEPMADANVDQYTFHVEPV----------DN--V--PQVIRQIKEAGMKVGQV--- 118 (277)
Q Consensus 75 ----------------~p~---~~i~~l~~ag~d~i~~H~e~~----------d~--g--~~~i~~i~~~~~~~~d~--- 118 (277)
.++ +.++.+.++|+|++++|.-.. .. + ..+.+.+|+....|+-.
T Consensus 234 ~~~~~~~~~~~~~~g~~~e~~~~~~~~l~~~gvD~l~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~pvi~~G~ 313 (382)
T cd02931 234 LRQGALPGEEFQEKGRDLEEGLKAAKILEEAGYDALDVDAGSYDAWYWNHPPMYQKKGMYLPYCKALKEVVDVPVIMAGR 313 (382)
T ss_pred cccccccccccccCCCCHHHHHHHHHHHHHhCCCEEEeCCCCCcccccccCCccCCcchhHHHHHHHHHHCCCCEEEeCC
Confidence 123 346777889999998884221 00 1 24677888876655432
Q ss_pred ---hhhhhHHHHhcCCCeEEe
Q psy11600 119 ---LQDWIEPMADANVDQYTF 136 (277)
Q Consensus 119 ---p~~~i~~~~~~g~d~it~ 136 (277)
|+..-+.+.+-++|.|.+
T Consensus 314 i~~~~~~~~~l~~g~~D~V~~ 334 (382)
T cd02931 314 MEDPELASEAINEGIADMISL 334 (382)
T ss_pred CCCHHHHHHHHHcCCCCeeee
Confidence 555555555556888887
No 391
>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=79.97 E-value=19 Score=35.07 Aligned_cols=70 Identities=17% Similarity=0.204 Sum_probs=48.8
Q ss_pred ChHHHHHHHHHhCCccceeeCCCCCHHhHHHHHhhcCceEEEEecCCCCCchhhhhhhhhHHHHHhhCCCccEEEeCCCC
Q psy11600 143 NVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVG 222 (277)
Q Consensus 143 ~~~~~~~~I~~~g~~~g~~i~p~t~~~~i~~~i~~~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~~~~~i~vdGgV~ 222 (277)
+....-+++++.+ .+--+.|..+++++-..|+. ....++-|..|++. =..|++|++++.+=||.+|||=.
T Consensus 35 t~~ktd~f~~~~~--~~k~i~~~~sieefV~~Le~-PRkI~lMVkAG~~V-------D~~I~~L~p~Le~gDIiIDGGNs 104 (473)
T COG0362 35 TTEKTDEFLAERA--KGKNIVPAYSIEEFVASLEK-PRKILLMVKAGTPV-------DAVIEQLLPLLEKGDIIIDGGNS 104 (473)
T ss_pred CHHHHHHHHHhCc--cCCCccccCcHHHHHHHhcC-CceEEEEEecCCcH-------HHHHHHHHhhcCCCCEEEeCCCc
Confidence 5556666777653 35578888898888887777 44444556888753 23467778888888999997754
No 392
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=79.94 E-value=8.6 Score=35.01 Aligned_cols=63 Identities=10% Similarity=0.007 Sum_probs=46.3
Q ss_pred HHHHHHHHHcCCCEEEE-eccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEEe
Q psy11600 21 HSESQNLLDSGADYLHL-DVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTFH 94 (277)
Q Consensus 21 ~~~~~~l~~~~~~~~h~-DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~H 94 (277)
.+..+..++.|++|+|+ |. |. . ..+.++++.+. +++++.+-==+. . +.++.+.++|++.+.+=
T Consensus 41 ~~~A~~~~~~Ga~~lHvVDL--g~-----~-n~~~i~~i~~~-~~~~v~vGGGIr-~-e~v~~~l~aGa~rVvIG 104 (253)
T TIGR02129 41 SYYAKLYKDDGVKGCHVIML--GP-----N-NDDAAKEALHA-YPGGLQVGGGIN-D-TNAQEWLDEGASHVIVT 104 (253)
T ss_pred HHHHHHHHHcCCCEEEEEEC--CC-----C-cHHHHHHHHHh-CCCCEEEeCCcC-H-HHHHHHHHcCCCEEEEC
Confidence 35566778899999995 66 22 1 45889999875 666666655554 5 88999999999999554
No 393
>PF02219 MTHFR: Methylenetetrahydrofolate reductase; InterPro: IPR003171 This family includes the 5,10-methylenetetrahydrofolate reductase 1.7.99.5 from EC from bacteria and methylenetetrahydrofolate reductase 1.5.1.20 from EC from eukaryotes. The structure for this domain is known [] to be a TIM barrel.; GO: 0004489 methylenetetrahydrofolate reductase (NADPH) activity, 0006555 methionine metabolic process, 0055114 oxidation-reduction process; PDB: 3IJD_B 1B5T_B 3FSU_C 1ZPT_C 2FMO_B 3FST_C 2FMN_C 1ZP3_A 1ZP4_B 1ZRQ_B ....
Probab=79.93 E-value=20 Score=32.82 Aligned_cols=158 Identities=16% Similarity=0.106 Sum_probs=85.4
Q ss_pred ccHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccC-----cHHhHHHHHhcCCCeEE
Q psy11600 18 SNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQN-----PQQWIEPMADANVDQYT 92 (277)
Q Consensus 18 ~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~-----p~~~i~~l~~ag~d~i~ 92 (277)
.+|.+.++.+.+.+.|+ +.|-|+.--............+++. ..++.-+||-..+ .+..+..+.++|++-+-
T Consensus 27 ~~l~~~~~~l~~~~pd~--vsVTd~~~~~~~~~s~~~a~~l~~~-~g~~~i~Hlt~rd~n~~~l~~~L~~~~~~Gi~niL 103 (287)
T PF02219_consen 27 EKLLEAAERLKDLGPDF--VSVTDNPGGSSRMMSLLAAAKLLKE-TGIEPIPHLTCRDRNREALQSDLLGAHALGIRNIL 103 (287)
T ss_dssp HHHHHHHHHHHTT--SE--EEE---GCGTTHHHHHHHHHHHHHH-TT--EEEEEESTTSBHHHHHHHHHHHHHTT--EEE
T ss_pred HHHHHHHHHhcCCCCCE--EEeecCCCCcccCCcHHHHHHHHHH-hCCceEEeecccCCCHHHHHHHHHHHHHcCCCeEE
Confidence 35778888888888899 8888976654444556667778765 6899999999976 34457777888998763
Q ss_pred Ee-ccCCC-------------CCHHHHHHHHhh-CC-Ccccc---h------------hhhhHHHHhcCCCeEEeecCCC
Q psy11600 93 FH-VEPVD-------------NVPQVIRQIKEA-GM-KVGQV---L------------QDWIEPMADANVDQYTFHVEPV 141 (277)
Q Consensus 93 ~H-~e~~d-------------~g~~~i~~i~~~-~~-~~~d~---p------------~~~i~~~~~~g~d~it~H~E~~ 141 (277)
+= -|... ...++|+.+++. .. ..+.+ | ..+++.=.++||+++.=++=-+
T Consensus 104 ~l~GD~~~~g~~~~~~~~~~~~~~~Li~~i~~~~~~~~~i~va~~P~~hp~~~~~~~~~~~l~~Ki~aGA~f~iTQ~~fd 183 (287)
T PF02219_consen 104 ALTGDPPKGGDHFAKPVFDFDYALDLIRLIRQEYGDDFSIGVAGYPEGHPEAPDFEAELKRLKKKIDAGADFIITQPFFD 183 (287)
T ss_dssp EESS-TSTTSSS----TTS-SSHHHHHHHHHHHHGGGSEEEEEE-TTHHTTCSSHHHHHHHHHHHHHTTESEEEEEE-SS
T ss_pred EecCCCCCCCccccCCCchhHHHHHHHHHHHHhcCcccccccccCCCCCccccCHHHHHHHHHHHHHCCCCEEeccccCC
Confidence 22 12110 145788888853 22 11111 1 2345555788998766543100
Q ss_pred C-ChHHHHHHHHHhCC--ccceeeCCCCCHHhHHHHHhhc
Q psy11600 142 D-NVPQVIRQIKEAGM--KVGLAIKPKTPVDVIAEYIESA 178 (277)
Q Consensus 142 ~-~~~~~~~~I~~~g~--~~g~~i~p~t~~~~i~~~i~~~ 178 (277)
- ...+..+.+++.|. ..=.|+.|=++...+..+...+
T Consensus 184 ~~~~~~~~~~~~~~g~~~pIi~GI~p~~s~~~~~~~~~~~ 223 (287)
T PF02219_consen 184 AEAFERFLDRLREAGIDVPIIPGIMPLTSAKSARFLAKLC 223 (287)
T ss_dssp HHHHHHHHHHHHHTTHTSEEEEEEE-HCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCcEEEEEeccCCHHHHHHHHhcc
Confidence 0 22344455555543 3345555656655555544433
No 394
>PF04055 Radical_SAM: Radical SAM superfamily; InterPro: IPR007197 Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].; GO: 0003824 catalytic activity, 0051536 iron-sulfur cluster binding; PDB: 2A5H_D 3T7V_A 3C8F_A 3CB8_A 2FB2_A 2FB3_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A ....
Probab=79.92 E-value=28 Score=27.47 Aligned_cols=80 Identities=15% Similarity=0.155 Sum_probs=53.3
Q ss_pred cccHHHHHHHH-HHcCCCEEEEeccccccccCCCCCHHHHHHHHhcC-CCCeeeeeeeccCc-HHhHHHHHhcCCCeEEE
Q psy11600 17 LSNLHSESQNL-LDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKI-PKAFFETHMMVQNP-QQWIEPMADANVDQYTF 93 (277)
Q Consensus 17 ~~~l~~~~~~l-~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~-~~~~~d~Hlmv~~p-~~~i~~l~~ag~d~i~~ 93 (277)
...+.++++.+ ...|... +-+..|.+..+..+. ..+..+++.. ....+.+..--..+ .++++.+.++|.+++.+
T Consensus 30 ~e~i~~~~~~~~~~~~~~~--i~~~~gep~~~~~~~-~~~~~~~~~~~~~~~i~~~t~~~~~~~~~l~~l~~~~~~~i~~ 106 (166)
T PF04055_consen 30 PEEILEEIKELKQDKGVKE--IFFGGGEPTLHPDFI-ELLELLRKIKKRGIRISINTNGTLLDEELLDELKKLGVDRIRI 106 (166)
T ss_dssp HHHHHHHHHHHHHHTTHEE--EEEESSTGGGSCHHH-HHHHHHHHCTCTTEEEEEEEESTTHCHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHHHhHhcCCcE--EEEeecCCCcchhHH-HHHHHHHHhhccccceeeeccccchhHHHHHHHHhcCccEEec
Confidence 34556677777 4656555 555677766543343 3444444432 45666666666666 78899999999999999
Q ss_pred eccCCC
Q psy11600 94 HVEPVD 99 (277)
Q Consensus 94 H~e~~d 99 (277)
.++..+
T Consensus 107 ~l~s~~ 112 (166)
T PF04055_consen 107 SLESLD 112 (166)
T ss_dssp EEBSSS
T ss_pred ccccCC
Confidence 998876
No 395
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=79.82 E-value=47 Score=30.13 Aligned_cols=86 Identities=13% Similarity=-0.039 Sum_probs=43.3
Q ss_pred CCCCCchhhhhhhhhHHHHHhhCCCccEEE----eCCCCcCcHHHHHHccCCC-----CC--cccccCHHHHHHHHHhhC
Q psy11600 188 PGFGGQKFMQDMMPKVKWLRENYPTLNIEV----DGGVGPNTIDECAKCLTGF-----GG--QKFMQDMMPKVKWLRENY 256 (277)
Q Consensus 188 Pgt~gq~~~~~~l~kI~~l~~~~~~~~i~v----dGgV~~~tv~~~~~~gpg~-----gg--q~F~~~~~~kI~~l~~~~ 256 (277)
++|.|...=..+.+.++.+++..+ +.+.+ |.|.-..|.-..+++|+++ +| ..-....++.+-..-+..
T Consensus 161 ~Dt~G~~~P~~v~~~~~~~~~~~~-~~i~~H~Hn~~Gla~an~~~a~~aG~~~vd~s~~GlGeraGn~~~e~~~~~l~~~ 239 (262)
T cd07948 161 ADTVGIATPRQVYELVRTLRGVVS-CDIEFHGHNDTGCAIANAYAALEAGATHIDTTVLGIGERNGITPLGGLIARMYTA 239 (262)
T ss_pred CCcCCCCCHHHHHHHHHHHHHhcC-CeEEEEECCCCChHHHHHHHHHHhCCCEEEEeccccccccCCccHHHHHHHHHhc
Confidence 566665555555666666666554 44444 4455555555666777764 11 111112344443322221
Q ss_pred CCCeEEEeCCCCccCHHHhh
Q psy11600 257 PTLNIEVDGGVGPNTIDECA 276 (277)
Q Consensus 257 ~~~~I~VDGGI~~~~~~~~~ 276 (277)
.. ..++.+++.+.+.++.
T Consensus 240 ~~--~~~~~~~~l~~l~~~~ 257 (262)
T cd07948 240 DP--EYVVSKYKLELLPELE 257 (262)
T ss_pred cc--cCCCCCcCHHHHHHHH
Confidence 11 1455577777766543
No 396
>COG0620 MetE Methionine synthase II (cobalamin-independent) [Amino acid transport and metabolism]
Probab=79.81 E-value=52 Score=31.10 Aligned_cols=85 Identities=14% Similarity=0.189 Sum_probs=48.5
Q ss_pred eeccccCcc-cHHHHHHHHHHcCCCEEEEeccc-cccccCCC---CCHHHHHHHHhcC----CCCeeeeeeeccCcHHhH
Q psy11600 10 PSILNSDLS-NLHSESQNLLDSGADYLHLDVMD-GTFVPNLT---FGHPVVKCLRNKI----PKAFFETHMMVQNPQQWI 80 (277)
Q Consensus 10 ~s~~~~d~~-~l~~~~~~l~~~~~~~~h~DimD-g~fvp~~~---~g~~~v~~l~~~~----~~~~~d~Hlmv~~p~~~i 80 (277)
+..++.|+. -+.++++.|+++|+..+.+|=-- +...|... +=...+..++... .+..+..|+--.+.....
T Consensus 149 ~~el~~~iA~al~~ev~~l~~agi~~iQiDEpal~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~i~~HiCy~e~~~~~ 228 (330)
T COG0620 149 REELAKDIALALRDEVKDLEDAGIKIIQIDEPALREGLPLRRDDDYLEWAVEAINLAAAGVGADTQIHLHICYSEFNDIP 228 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCEEeechhhhhcCCccccchHHHHHHHHHHHHHHhcCCCCcEEEEEEECCcccchh
Confidence 334444444 47789999999999998887432 33334433 2223343444322 255666665555555555
Q ss_pred HHHHhcCCCeEEEe
Q psy11600 81 EPMADANVDQYTFH 94 (277)
Q Consensus 81 ~~l~~ag~d~i~~H 94 (277)
+.+.+..+|.+++.
T Consensus 229 ~~i~~ld~dv~~~e 242 (330)
T COG0620 229 DAIEALDADVIDIE 242 (330)
T ss_pred HHHhhcCCcEEeee
Confidence 66666666666433
No 397
>PF01487 DHquinase_I: Type I 3-dehydroquinase; InterPro: IPR001381 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. The best studied type I enzyme is from Escherichia coli (gene aroD) and related bacteria where it is a homodimeric protein. In fungi, dehydroquinase is part of a multifunctional enzyme which catalyzes five consecutive steps in the shikimate pathway. A histidine [] is involved in the catalytic mechanism.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 2O7Q_A 2GPT_A 2O7S_A 1SFL_A 2OCZ_A 2OX1_C 1GQN_A 1QFE_B 1L9W_D 3L9C_A ....
Probab=79.80 E-value=25 Score=30.76 Aligned_cols=133 Identities=17% Similarity=0.181 Sum_probs=75.6
Q ss_pred eeccccCcccHHHHHHHHHHcCCCEEE--EeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeecc--------CcHHh
Q psy11600 10 PSILNSDLSNLHSESQNLLDSGADYLH--LDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQ--------NPQQW 79 (277)
Q Consensus 10 ~s~~~~d~~~l~~~~~~l~~~~~~~~h--~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~--------~p~~~ 79 (277)
.|+..-|...+.++++.+...|+|.+= +|-.++ .+...-.+.++.+|+. .++|+-+++-.. ..+.+
T Consensus 2 v~l~~~~~~~~~~~~~~~~~~~~D~vElRlD~l~~---~~~~~~~~~l~~lr~~-~~~piI~T~R~~~eGG~~~~~~~~~ 77 (224)
T PF01487_consen 2 VPLTGSTLEELLAELEEAESSGADAVELRLDYLEN---DSAEDISEQLAELRRS-LDLPIIFTVRTKEEGGRFQGSEEEY 77 (224)
T ss_dssp EEE--SSHHHHHHHHHHHHHTTTSEEEEEGGGSTT---TSHHHHHHHHHHHHHH-CTSEEEEE--BGGGTSSBSS-HHHH
T ss_pred EeeCCCCHHHHHHHHHHHHhcCCCEEEEEeccccc---cChHHHHHHHHHHHHh-CCCCEEEEecccccCCCCcCCHHHH
Confidence 466777888888899998887888854 455554 2233445789999986 599999998864 23344
Q ss_pred ---HHHHHhcCCCeEEEeccCCCCCHHH---HHHHHhhCCC----cccc---h-----hhhhHHHHhcCCCeEEe--ecC
Q psy11600 80 ---IEPMADANVDQYTFHVEPVDNVPQV---IRQIKEAGMK----VGQV---L-----QDWIEPMADANVDQYTF--HVE 139 (277)
Q Consensus 80 ---i~~l~~ag~d~i~~H~e~~d~g~~~---i~~i~~~~~~----~~d~---p-----~~~i~~~~~~g~d~it~--H~E 139 (277)
++.+.+.|++++ .+|.... ++. ....++.... .|+. | ...++.+.+.|||.+=+ ...
T Consensus 78 ~~ll~~~~~~~~d~i--DiE~~~~-~~~~~~~~~~~~~~~~iI~S~H~f~~tp~~~~l~~~~~~~~~~gadivKia~~~~ 154 (224)
T PF01487_consen 78 LELLERAIRLGPDYI--DIELDLF-PDDLKSRLAARKGGTKIILSYHDFEKTPSWEELIELLEEMQELGADIVKIAVMAN 154 (224)
T ss_dssp HHHHHHHHHHTSSEE--EEEGGCC-HHHHHHHHHHHHTTSEEEEEEEESS---THHHHHHHHHHHHHTT-SEEEEEEE-S
T ss_pred HHHHHHHHHcCCCEE--EEEcccc-hhHHHHHHHHhhCCCeEEEEeccCCCCCCHHHHHHHHHHHHhcCCCeEEEEeccC
Confidence 556667799999 5554322 222 2222333322 2322 3 34567777888886544 443
Q ss_pred CCCChHHHHHHHH
Q psy11600 140 PVDNVPQVIRQIK 152 (277)
Q Consensus 140 ~~~~~~~~~~~I~ 152 (277)
+..+..+.++
T Consensus 155 ---~~~D~~~l~~ 164 (224)
T PF01487_consen 155 ---SPEDVLRLLR 164 (224)
T ss_dssp ---SHHHHHHHHH
T ss_pred ---CHHHHHHHHH
Confidence 4555555443
No 398
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=79.80 E-value=30 Score=33.06 Aligned_cols=106 Identities=14% Similarity=0.267 Sum_probs=58.5
Q ss_pred ccceeeCCCC-CHHhHHHHHh-hcCceEEEEecCCCCCchhhhhhhhhHHHHHhhCCCccEEEeCCCCcCcHHHHHHccC
Q psy11600 157 KVGLAIKPKT-PVDVIAEYIE-SADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKCLT 234 (277)
Q Consensus 157 ~~g~~i~p~t-~~~~i~~~i~-~~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~~~~~i~vdGgV~~~tv~~~~~~gp 234 (277)
..+.++.+.. ..+....+++ .+|++++=+-+ | ..+..++.++++++.+|++.+..=.=++.+....|+++|+
T Consensus 98 ~V~aavg~~~~~~er~~~L~~agvD~ivID~a~-g-----~s~~~~~~ik~ik~~~~~~~viaGNV~T~e~a~~L~~aGa 171 (352)
T PF00478_consen 98 LVAAAVGTRDDDFERAEALVEAGVDVIVIDSAH-G-----HSEHVIDMIKKIKKKFPDVPVIAGNVVTYEGAKDLIDAGA 171 (352)
T ss_dssp CEEEEEESSTCHHHHHHHHHHTT-SEEEEE-SS-T-----TSHHHHHHHHHHHHHSTTSEEEEEEE-SHHHHHHHHHTT-
T ss_pred eEEEEecCCHHHHHHHHHHHHcCCCEEEccccC-c-----cHHHHHHHHHHHHHhCCCceEEecccCCHHHHHHHHHcCC
Confidence 3455665554 3455556553 46665432211 2 2345566788888889988776432345677778888888
Q ss_pred CC-----CCccc----------cc--CHHHHHHHHHhhCCCCeEEEeCCCCc
Q psy11600 235 GF-----GGQKF----------MQ--DMMPKVKWLRENYPTLNIEVDGGVGP 269 (277)
Q Consensus 235 g~-----ggq~F----------~~--~~~~kI~~l~~~~~~~~I~VDGGI~~ 269 (277)
+. |+.+- .| .....+.+.++.+ ...|-.||||+.
T Consensus 172 d~vkVGiGpGsiCtTr~v~GvG~PQ~tAv~~~a~~a~~~-~v~iIADGGi~~ 222 (352)
T PF00478_consen 172 DAVKVGIGPGSICTTREVTGVGVPQLTAVYECAEAARDY-GVPIIADGGIRT 222 (352)
T ss_dssp SEEEESSSSSTTBHHHHHHSBSCTHHHHHHHHHHHHHCT-TSEEEEESS-SS
T ss_pred CEEEEeccCCcccccccccccCCcHHHHHHHHHHHhhhc-cCceeecCCcCc
Confidence 85 32221 11 2333334444333 578999999985
No 399
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=79.77 E-value=17 Score=36.10 Aligned_cols=132 Identities=17% Similarity=0.269 Sum_probs=80.3
Q ss_pred CcccHHHHHHHHHHcCCCEEEEeccc--cccccCCCCCHHHHHHHHhcCCCCeeeeeeeccC---cHHhHHHHHhcCCCe
Q psy11600 16 DLSNLHSESQNLLDSGADYLHLDVMD--GTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQN---PQQWIEPMADANVDQ 90 (277)
Q Consensus 16 d~~~l~~~~~~l~~~~~~~~h~DimD--g~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~---p~~~i~~l~~ag~d~ 90 (277)
+...+.+..+++++.|+|. +=|-| |...|.-. .+.++.+|+.+ ++++.+|.=-.. ..+++.. .++|+++
T Consensus 151 t~e~~~~~a~~l~~~Gad~--I~i~Dt~G~l~P~~v--~~Lv~~lk~~~-~vpI~~H~Hnt~GlA~AN~laA-ieaGad~ 224 (467)
T PRK14041 151 TLEYYLEFARELVDMGVDS--ICIKDMAGLLTPKRA--YELVKALKKKF-GVPVEVHSHCTTGLASLAYLAA-VEAGADM 224 (467)
T ss_pred CHHHHHHHHHHHHHcCCCE--EEECCccCCcCHHHH--HHHHHHHHHhc-CCceEEEecCCCCcHHHHHHHH-HHhCCCE
Confidence 4556777788899999999 55677 66666532 37788999875 489999987655 3334433 4689999
Q ss_pred EEEeccCC--CC------CHHHHHHHHhhCCC-cccc-----hhhhhHHHHhc---------C-CCeEEeecCCCCChHH
Q psy11600 91 YTFHVEPV--DN------VPQVIRQIKEAGMK-VGQV-----LQDWIEPMADA---------N-VDQYTFHVEPVDNVPQ 146 (277)
Q Consensus 91 i~~H~e~~--d~------g~~~i~~i~~~~~~-~~d~-----p~~~i~~~~~~---------g-~d~it~H~E~~~~~~~ 146 (277)
+ |.-+. -+ -..++..++..... -+|. -.+|++.+.+. + -..+..|-=|++...+
T Consensus 225 v--D~sv~~~g~gagN~atE~lv~~L~~~g~~tgiDl~~L~~~~~~~~~vr~~y~~~~~~~~~~~~~v~~~q~PGG~~sn 302 (467)
T PRK14041 225 F--DTAISPFSMGTSQPPFESMYYAFRENGKETDFDRKALKFLVEYFTKVREKYSEYDVGMKSPDSRILVSQIPGGMYSN 302 (467)
T ss_pred E--EeeccccCCCCCChhHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcCeeeCCCCcchHHH
Confidence 8 54332 21 23456666654433 2333 23444444321 1 1246666666666666
Q ss_pred HHHHHHHhC
Q psy11600 147 VIRQIKEAG 155 (277)
Q Consensus 147 ~~~~I~~~g 155 (277)
+.+.+++.|
T Consensus 303 l~~Ql~~~g 311 (467)
T PRK14041 303 LVKQLKEQK 311 (467)
T ss_pred HHHHHHHCC
Confidence 666666643
No 400
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=79.73 E-value=9.2 Score=33.95 Aligned_cols=74 Identities=22% Similarity=0.255 Sum_probs=53.4
Q ss_pred cCcccHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCc---HHhHHHHHhcCCCeE
Q psy11600 15 SDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNP---QQWIEPMADANVDQY 91 (277)
Q Consensus 15 ~d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p---~~~i~~l~~ag~d~i 91 (277)
.++..+.+-++.+.+.|++.+.+==..|...|+- =.+.++.+|+..+++++.+|.=-..- .+.+.. .++|++++
T Consensus 143 ~~~~~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~--v~~li~~l~~~~~~~~~~~H~Hn~~gla~an~laA-~~aG~~~i 219 (265)
T cd03174 143 TDPEYVLEVAKALEEAGADEISLKDTVGLATPEE--VAELVKALREALPDVPLGLHTHNTLGLAVANSLAA-LEAGADRV 219 (265)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEechhcCCcCHHH--HHHHHHHHHHhCCCCeEEEEeCCCCChHHHHHHHH-HHcCCCEE
Confidence 6777788999999999999977432336666652 23678888988787999999876553 333433 46899998
No 401
>cd08556 GDPD Glycerophosphodiester phosphodiesterase domain as found in prokaryota and eukaryota, and similar proteins. The typical glycerophosphodiester phosphodiesterase domain (GDPD) consists of a TIM barrel and a small insertion domain named the GDPD-insertion (GDPD-I) domain, which is specific for GDPD proteins. This family corresponds to both typical GDPD domain and GDPD-like domain which lacks the GDPD-I region. Members in this family mainly consist of a large family of prokaryotic and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), and a number of uncharacterized homologs. Sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria are also included in this family. GDPD plays an essential role in glycerol metabolism and catalyzes the hydrolysis of glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcoho
Probab=79.69 E-value=11 Score=31.21 Aligned_cols=85 Identities=19% Similarity=0.197 Sum_probs=54.2
Q ss_pred CCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHH--HHHhcCCCeEEEeccCCCCCHHHHHHHHhhCCCcc--cc-hhhh
Q psy11600 48 LTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIE--PMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVG--QV-LQDW 122 (277)
Q Consensus 48 ~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~--~l~~ag~d~i~~H~e~~d~g~~~i~~i~~~~~~~~--d~-p~~~ 122 (277)
.+|.+..++++|+..|++++-.=.. .....+.. .....|++.+.+++.. ..++.++.+++++..+. -+ -...
T Consensus 97 ~s~~~~~l~~~~~~~p~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~i~~~~~~g~~v~~wtvn~~~~ 173 (189)
T cd08556 97 SSFDHEALRALKELDPEVPTGLLVD-KPPLDPLLAELARALGADAVNPHYKL--LTPELVRAAHAAGLKVYVWTVNDPED 173 (189)
T ss_pred EeCCHHHHHHHHHhCCCCcEEEEee-cCcccchhhhHHHhcCCeEEccChhh--CCHHHHHHHHHcCCEEEEEcCCCHHH
Confidence 3577899999999878876533221 22222222 4567789988555443 46888999988765532 22 3445
Q ss_pred hHHHHhcCCCeEE
Q psy11600 123 IEPMADANVDQYT 135 (277)
Q Consensus 123 i~~~~~~g~d~it 135 (277)
++.+.+.|+|.|+
T Consensus 174 ~~~~~~~GVdgI~ 186 (189)
T cd08556 174 ARRLLALGVDGII 186 (189)
T ss_pred HHHHHHCCCCEEe
Confidence 6667788888776
No 402
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=79.66 E-value=7.8 Score=36.48 Aligned_cols=76 Identities=18% Similarity=0.267 Sum_probs=56.5
Q ss_pred CCCeeeeeeeccCcHHhH---HHHHhcCCCeEEEeccCC------CC-----------CHHHHHHHHhhCCCcccc----
Q psy11600 63 PKAFFETHMMVQNPQQWI---EPMADANVDQYTFHVEPV------DN-----------VPQVIRQIKEAGMKVGQV---- 118 (277)
Q Consensus 63 ~~~~~d~Hlmv~~p~~~i---~~l~~ag~d~i~~H~e~~------d~-----------g~~~i~~i~~~~~~~~d~---- 118 (277)
...|+-+.|.-.+|+.+. +.+.++|+|.|-+|...- ++ ..++++++|+....++++
T Consensus 63 ~e~p~~vQl~g~~p~~~~~aA~~~~~~g~d~IdlN~gCP~~~v~~~~~Gs~L~~~p~~~~eiv~avr~~v~~pVsvKiR~ 142 (333)
T PRK11815 63 EEHPVALQLGGSDPADLAEAAKLAEDWGYDEINLNVGCPSDRVQNGRFGACLMAEPELVADCVKAMKDAVSIPVTVKHRI 142 (333)
T ss_pred CCCcEEEEEeCCCHHHHHHHHHHHHhcCCCEEEEcCCCCHHHccCCCeeeHHhcCHHHHHHHHHHHHHHcCCceEEEEEe
Confidence 367899999999999874 445567999998886531 21 347888888876556554
Q ss_pred ----------hhhhhHHHHhcCCCeEEeec
Q psy11600 119 ----------LQDWIEPMADANVDQYTFHV 138 (277)
Q Consensus 119 ----------p~~~i~~~~~~g~d~it~H~ 138 (277)
..++++.+.++|++.+++|.
T Consensus 143 g~~~~~t~~~~~~~~~~l~~aG~d~i~vh~ 172 (333)
T PRK11815 143 GIDDQDSYEFLCDFVDTVAEAGCDTFIVHA 172 (333)
T ss_pred eeCCCcCHHHHHHHHHHHHHhCCCEEEEcC
Confidence 13567888999999999995
No 403
>PLN02460 indole-3-glycerol-phosphate synthase
Probab=79.66 E-value=19 Score=34.12 Aligned_cols=191 Identities=10% Similarity=0.052 Sum_probs=106.2
Q ss_pred HHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEEeccCC--CCCHHHHHHHHhh-CCCcccc-----hhhhh
Q psy11600 52 HPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTFHVEPV--DNVPQVIRQIKEA-GMKVGQV-----LQDWI 123 (277)
Q Consensus 52 ~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~H~e~~--d~g~~~i~~i~~~-~~~~~d~-----p~~~i 123 (277)
+.+|.++|+.-|..-+-. ---+|.+..+.+.++||..+++--|.. .|+...++++|+. ...|+.. -...|
T Consensus 119 ~~vIAEvKrASPSkG~I~--~~~dp~~iA~~Ye~~GA~aISVLTd~~~F~Gs~e~L~~vr~~~v~lPvLrKDFIID~yQI 196 (338)
T PLN02460 119 PGLIAEVKKASPSRGVLR--ENFDPVEIAQAYEKGGAACLSVLTDEKYFQGSFENLEAIRNAGVKCPLLCKEFIVDAWQI 196 (338)
T ss_pred cceEeeeccCCCCCCccC--CCCCHHHHHHHHHhCCCcEEEEecCcCcCCCCHHHHHHHHHcCCCCCEeeccccCCHHHH
Confidence 456666776555432111 113789999999999999999998864 5699999999997 7777755 34456
Q ss_pred HHHHhcCCCeEEeecCCCC--ChHHHHHHHHHhCCccceeeCCCCCH---HhHHHHHhhcCceEEEEecCCCCCchhhhh
Q psy11600 124 EPMADANVDQYTFHVEPVD--NVPQVIRQIKEAGMKVGLAIKPKTPV---DVIAEYIESADLVLIMTVEPGFGGQKFMQD 198 (277)
Q Consensus 124 ~~~~~~g~d~it~H~E~~~--~~~~~~~~I~~~g~~~g~~i~p~t~~---~~i~~~i~~~d~vl~mav~Pgt~gq~~~~~ 198 (277)
.+-..+|||.|-+-+..-. .+..+.+..+.+| +.+=+-+ +++...+...+ .-++.||-- ....|--+
T Consensus 197 ~eAr~~GADAVLLIaaiL~~~~L~~l~~~A~~LG------me~LVEVH~~~ElerAl~~~g-a~iIGINNR-dL~Tf~vD 268 (338)
T PLN02460 197 YYARSKGADAILLIAAVLPDLDIKYMLKICKSLG------MAALIEVHDEREMDRVLGIEG-VELIGINNR-SLETFEVD 268 (338)
T ss_pred HHHHHcCCCcHHHHHHhCCHHHHHHHHHHHHHcC------CeEEEEeCCHHHHHHHHhcCC-CCEEEEeCC-CCCcceEC
Confidence 6667889998877653000 1223334444444 3332222 23333343212 223455531 11112111
Q ss_pred hhhhHHHHHh-----hCC--CccEEEeCCCC-cCcHHHHHHccCCC---CCcccc-cCHHHHHHHHH
Q psy11600 199 MMPKVKWLRE-----NYP--TLNIEVDGGVG-PNTIDECAKCLTGF---GGQKFM-QDMMPKVKWLR 253 (277)
Q Consensus 199 ~l~kI~~l~~-----~~~--~~~i~vdGgV~-~~tv~~~~~~gpg~---ggq~F~-~~~~~kI~~l~ 253 (277)
++.-.++.+ ..+ ++-++--.|+. .+.+..+.++|++. |...+. ++.-..+++|.
T Consensus 269 -l~~t~~L~~~~~~~~i~~~~~~~VsESGI~t~~Dv~~l~~~GadAvLVGEsLMr~~dp~~~l~~L~ 334 (338)
T PLN02460 269 -ISNTKKLLEGERGEQIREKGIIVVGESGLFTPDDVAYVQNAGVKAVLVGESLVKQDDPGKGIAGLF 334 (338)
T ss_pred -HHHHHHHhhhccccccCCCCeEEEECCCCCCHHHHHHHHHCCCCEEEECHHHhCCCCHHHHHHHHh
Confidence 223334444 332 33333446664 24466677777774 665555 56777777664
No 404
>TIGR03326 rubisco_III ribulose bisphosphate carboxylase, type III. Members of this protein family are the archaeal, single chain, type III form of ribulose bisphosphate carboxylase, or RuBisCO. Members act is a three-step pathway for conversion of the sugar moiety of AMP to two molecules of 3-phosphoglycerate. Many of these species use ADP-dependent sugar kinases, which form AMP, for glycolysis.
Probab=79.64 E-value=21 Score=34.79 Aligned_cols=94 Identities=18% Similarity=0.244 Sum_probs=64.6
Q ss_pred EeeeccccCcccHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhc--CCCCeeeeee-----eccCcH---
Q psy11600 8 IGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNK--IPKAFFETHM-----MVQNPQ--- 77 (277)
Q Consensus 8 ~~~s~~~~d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~--~~~~~~d~Hl-----mv~~p~--- 77 (277)
-+|.|- ++...+.+..+.+.+.|++.+.+|++ +.|...++.||+. .+++++.+|= ++.+|.
T Consensus 215 ya~NiT-~~~~em~~ra~~~~~~G~~~~mv~~~--------~~G~~~l~~l~~~~~~~~l~ih~Hra~~ga~~~~~~~Gi 285 (412)
T TIGR03326 215 YLANIT-APVREMERRAELVADLGGQYVMVDVV--------VCGWSALQYIRELTEDLGLAIHAHRAMHAAFTRNPKHGI 285 (412)
T ss_pred EEEEec-CCHHHHHHHHHHHHHhCCCeEEEEee--------ccchHHHHHHHHhhccCCeEEEEcCCcccccccCCCCcC
Confidence 344444 66788889999999999999888864 3566778898873 4688999983 444443
Q ss_pred ---HhHHHHHhcCCCeEEEeccCC-CC----CHHHHHHHHhhC
Q psy11600 78 ---QWIEPMADANVDQYTFHVEPV-DN----VPQVIRQIKEAG 112 (277)
Q Consensus 78 ---~~i~~l~~ag~d~i~~H~e~~-d~----g~~~i~~i~~~~ 112 (277)
-+-+.+.-+|+|.+ |+-.. -| ..+.+.++.+..
T Consensus 286 s~~vl~kl~RLaGaD~~--~~~t~~~Gk~~~~~~~~~~~~~~~ 326 (412)
T TIGR03326 286 SMFALAKLYRLIGVDQL--HTGTAGVGKLEGGKEDTKQINDFL 326 (412)
T ss_pred cHHHHHHHHHHcCCCee--eeCCCccCCCCCCHHHHHHHHHHH
Confidence 13444556899999 66655 32 455565665544
No 405
>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme. This clade is a member of a subfamily (TIGR00089) and spans low GC Gram positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium.
Probab=79.63 E-value=21 Score=34.43 Aligned_cols=93 Identities=14% Similarity=0.274 Sum_probs=57.0
Q ss_pred cccCcccHHHHHHHHHHcCCCEEEEeccc---cccccCC---CCCHHHHHHHHhcCCCCeeeeeeeccCcHH----hHHH
Q psy11600 13 LNSDLSNLHSESQNLLDSGADYLHLDVMD---GTFVPNL---TFGHPVVKCLRNKIPKAFFETHMMVQNPQQ----WIEP 82 (277)
Q Consensus 13 ~~~d~~~l~~~~~~l~~~~~~~~h~DimD---g~fvp~~---~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~----~i~~ 82 (277)
-+-+..++-+|++.+.+.|+..+.+ .| +.|.+.+ ..-.++++.+++ .+.. .-+++...+|.. .++.
T Consensus 165 r~r~~e~I~~Ei~~l~~~g~~ei~l--~~~~~~~y~~d~~~~~~l~~Ll~~l~~-~~~~-~~ir~~~~~p~~~~~ell~~ 240 (414)
T TIGR01579 165 RSVPMEAILKQVKILVAKGYKEIVL--TGVNLGSYGDDLKNGTSLAKLLEQILQ-IPGI-KRIRLSSIDPEDIDEELLEA 240 (414)
T ss_pred ccCCHHHHHHHHHHHHHCCCceEEE--eeEccchhccCCCCCCcHHHHHHHHhc-CCCC-cEEEEeCCChhhCCHHHHHH
Confidence 4456677889999999989888553 34 2232221 112356666665 3443 235555556553 5777
Q ss_pred HHhcC--CCeEEEeccCCCCCHHHHHHHHhh
Q psy11600 83 MADAN--VDQYTFHVEPVDNVPQVIRQIKEA 111 (277)
Q Consensus 83 l~~ag--~d~i~~H~e~~d~g~~~i~~i~~~ 111 (277)
+.++| +.++ |+-+-.+.+++++.+++.
T Consensus 241 m~~~~~~~~~l--~lglESgs~~vLk~m~R~ 269 (414)
T TIGR01579 241 IASEKRLCPHL--HLSLQSGSDRVLKRMRRK 269 (414)
T ss_pred HHhcCccCCCe--EECCCcCChHHHHhcCCC
Confidence 77776 6677 655556678888887664
No 406
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=79.60 E-value=56 Score=30.81 Aligned_cols=106 Identities=15% Similarity=0.193 Sum_probs=59.3
Q ss_pred ceeeCCCCCHHhHHHHHhhcCc---eEEEEecCCCCCchhhhhhhhhHHHHHhhCCCccEEEeCCC-CcCcHHHHHHccC
Q psy11600 159 GLAIKPKTPVDVIAEYIESADL---VLIMTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGV-GPNTIDECAKCLT 234 (277)
Q Consensus 159 g~~i~p~t~~~~i~~~i~~~d~---vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~~~~~i~vdGgV-~~~tv~~~~~~gp 234 (277)
-+++..|+..+.++.....++. .-.+.+.+.-+ --..+++.++++++..|...+ +.|+| +.+.++.+.++|+
T Consensus 84 ~v~~SvG~t~e~~~r~~~lv~a~~~~d~i~~D~ahg---~s~~~~~~i~~i~~~~p~~~v-i~GnV~t~e~a~~l~~aGa 159 (321)
T TIGR01306 84 FASISVGVKACEYEFVTQLAEEALTPEYITIDIAHG---HSNSVINMIKHIKTHLPDSFV-IAGNVGTPEAVRELENAGA 159 (321)
T ss_pred EEEEEcCCCHHHHHHHHHHHhcCCCCCEEEEeCccC---chHHHHHHHHHHHHhCCCCEE-EEecCCCHHHHHHHHHcCc
Confidence 3555667766544333222211 12244555322 235667888888887776543 45544 4456667888888
Q ss_pred CC-------CCcc---------cccCHHHHHHHHHhhCCCCeEEEeCCCCc
Q psy11600 235 GF-------GGQK---------FMQDMMPKVKWLRENYPTLNIEVDGGVGP 269 (277)
Q Consensus 235 g~-------ggq~---------F~~~~~~kI~~l~~~~~~~~I~VDGGI~~ 269 (277)
+. |+.. +..-.+.-|.+.++.. +..|..||||.-
T Consensus 160 d~I~V~~G~G~~~~tr~~~g~g~~~~~l~ai~ev~~a~-~~pVIadGGIr~ 209 (321)
T TIGR01306 160 DATKVGIGPGKVCITKIKTGFGTGGWQLAALRWCAKAA-RKPIIADGGIRT 209 (321)
T ss_pred CEEEECCCCCccccceeeeccCCCchHHHHHHHHHHhc-CCeEEEECCcCc
Confidence 74 2221 2111345566655543 577999999985
No 407
>cd08567 GDPD_SpGDE_like Glycerophosphodiester phosphodiesterase domain of putative Silicibacter pomeroyi glycerophosphodiester phosphodiesterase and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) and similar proteins. The prototype of this CD is a putative GP-GDE from Silicibacter pomeroyi (SpGDE). It shows high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=79.47 E-value=10 Score=33.77 Aligned_cols=84 Identities=13% Similarity=0.099 Sum_probs=48.4
Q ss_pred CCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEEeccCCCCCHHHHHHHHhhCCCcc--cc--hhhhhH
Q psy11600 49 TFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVG--QV--LQDWIE 124 (277)
Q Consensus 49 ~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~H~e~~d~g~~~i~~i~~~~~~~~--d~--p~~~i~ 124 (277)
+|.++.++.+|+..|+.++-.-.......+..+.+...|++.++.++. .-.+.+++.+++.+...+ -+ |+ .+.
T Consensus 170 Sf~~~~l~~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~G~~v~vwtvn~~~-~~~ 246 (263)
T cd08567 170 SFDWRTLQEVRRLAPDIPTVALTEETTLGNLPRAAKKLGADIWSPYFT--LVTKELVDEAHALGLKVVPWTVNDPE-DMA 246 (263)
T ss_pred eCCHHHHHHHHHHCCCccEEEEecCCcccCHHHHHHHhCCcEEecchh--hcCHHHHHHHHHCCCEEEEecCCCHH-HHH
Confidence 477888888888777766544332221124444555678877743322 235677777777764422 22 33 345
Q ss_pred HHHhcCCCeEE
Q psy11600 125 PMADANVDQYT 135 (277)
Q Consensus 125 ~~~~~g~d~it 135 (277)
.+.+.|+|.|+
T Consensus 247 ~~~~~Gvdgi~ 257 (263)
T cd08567 247 RLIDLGVDGII 257 (263)
T ss_pred HHHHcCCCEEE
Confidence 66677777665
No 408
>PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=79.31 E-value=19 Score=34.30 Aligned_cols=101 Identities=15% Similarity=0.230 Sum_probs=75.7
Q ss_pred cccHHHHHHHHHHcCCCEEEEeccc--cccc----cC-CCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCC
Q psy11600 17 LSNLHSESQNLLDSGADYLHLDVMD--GTFV----PN-LTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVD 89 (277)
Q Consensus 17 ~~~l~~~~~~l~~~~~~~~h~DimD--g~fv----p~-~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d 89 (277)
+.+.++..+.+++.|+|+|=+-|=- |.|- |+ =.+..+.++++++..+++|+..|==..-|.+.++.+.+.|-|
T Consensus 172 ~T~PeeA~~Fv~~TgvD~LAvaiGT~HG~Yk~~~~p~~~~LdfdrL~eI~~~v~~vPLVLHGgSG~~~~~~~~~~~~g~~ 251 (347)
T PRK09196 172 LTDPEEAADFVKKTQVDALAIAIGTSHGAYKFTRKPTGDVLAIDRIKEIHARLPNTHLVMHGSSSVPQELLDIINEYGGD 251 (347)
T ss_pred CCCHHHHHHHHHHhCcCeEhhhhccccCCCCCCCCCChhhccHHHHHHHHhcCCCCCEEEeCCCCCCHHHHHHHHHhcCC
Confidence 6788899999999999998888844 7774 33 013447899999985589999999999999999999999987
Q ss_pred eEEEeccCCCCCHHHHHHHHhhCCCcccchhhhhHHHHhcCCCeEEeecC
Q psy11600 90 QYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPMADANVDQYTFHVE 139 (277)
Q Consensus 90 ~i~~H~e~~d~g~~~i~~i~~~~~~~~d~p~~~i~~~~~~g~d~it~H~E 139 (277)
+ | ++ -| +|.+-+...+++|+.-|-+-.|
T Consensus 252 ~---~-~~-~G-----------------~~~e~i~~ai~~GI~KINi~Td 279 (347)
T PRK09196 252 M---P-ET-YG-----------------VPVEEIQEGIKHGVRKVNIDTD 279 (347)
T ss_pred c---c-cc-CC-----------------CCHHHHHHHHHCCCceEEeChH
Confidence 4 2 11 22 2455666677777777777544
No 409
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=79.29 E-value=29 Score=32.09 Aligned_cols=120 Identities=11% Similarity=0.094 Sum_probs=69.1
Q ss_pred cCcccHHHHHHHHHHcCCCEEEEecccccccc------C------CCC--CHHHHHHHHhc--CCCCeeeee----eecc
Q psy11600 15 SDLSNLHSESQNLLDSGADYLHLDVMDGTFVP------N------LTF--GHPVVKCLRNK--IPKAFFETH----MMVQ 74 (277)
Q Consensus 15 ~d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp------~------~~~--g~~~v~~l~~~--~~~~~~d~H----lmv~ 74 (277)
.|..++.+.++++.+.|+.-+|+ -|..|-+ + ++. -...|+..++. -+++++-+. +...
T Consensus 89 g~~~~v~r~V~~l~~aGvaGi~i--EDq~~pk~cg~~~~~~~~~l~s~ee~~~kI~Aa~~a~~~~~~~IiARTDa~~~~~ 166 (285)
T TIGR02320 89 GNFEHFRRLVRKLERRGVSAVCI--EDKLGLKKNSLFGNDVAQPQASVEEFCGKIRAGKDAQTTEDFMIIARVESLILGK 166 (285)
T ss_pred CCHHHHHHHHHHHHHcCCeEEEE--eccCCCccccccCCCCcccccCHHHHHHHHHHHHHhccCCCeEEEEecccccccC
Confidence 46678889999999999999777 2332211 0 111 12233333321 245666666 3332
Q ss_pred CcHHh---HHHHHhcCCCeEEEeccCCCCCHHHHHHHHhhC-----CCcccc-----hhhhhHHHHhcCCCeEEeec
Q psy11600 75 NPQQW---IEPMADANVDQYTFHVEPVDNVPQVIRQIKEAG-----MKVGQV-----LQDWIEPMADANVDQYTFHV 138 (277)
Q Consensus 75 ~p~~~---i~~l~~ag~d~i~~H~e~~d~g~~~i~~i~~~~-----~~~~d~-----p~~~i~~~~~~g~d~it~H~ 138 (277)
..++- .+.+.++|||.+.++.-.. .++.++++.+.. ..|+-+ |..=+++|.++|++.+++..
T Consensus 167 ~~~eAi~Ra~ay~eAGAD~ifv~~~~~--~~~ei~~~~~~~~~~~p~~pl~~~~~~~~~~~~~eL~~lG~~~v~~~~ 241 (285)
T TIGR02320 167 GMEDALKRAEAYAEAGADGIMIHSRKK--DPDEILEFARRFRNHYPRTPLVIVPTSYYTTPTDEFRDAGISVVIYAN 241 (285)
T ss_pred CHHHHHHHHHHHHHcCCCEEEecCCCC--CHHHHHHHHHHhhhhCCCCCEEEecCCCCCCCHHHHHHcCCCEEEEhH
Confidence 33343 5667889999997773111 233344443332 123322 33347999999999999954
No 410
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=79.21 E-value=18 Score=34.40 Aligned_cols=125 Identities=13% Similarity=0.225 Sum_probs=63.7
Q ss_pred cHHHHHHHHHHc---CCCEEEEeccccccccCCCCCH----HHHHHHHhcCCCCe-eeeeeeccCc----HHhHHHHHhc
Q psy11600 19 NLHSESQNLLDS---GADYLHLDVMDGTFVPNLTFGH----PVVKCLRNKIPKAF-FETHMMVQNP----QQWIEPMADA 86 (277)
Q Consensus 19 ~l~~~~~~l~~~---~~~~~h~DimDg~fvp~~~~g~----~~v~~l~~~~~~~~-~d~Hlmv~~p----~~~i~~l~~a 86 (277)
.+.+|++.+... +++. +-+-+|++. .+.+ ++++.+++.++-.. ..+.+. .|| .+.++.+.++
T Consensus 36 ~l~~Ei~~~~~~~~~~i~~--i~~gGGtpt---~l~~~~l~~ll~~i~~~~~~~~~~eit~e-~~p~~l~~e~l~~l~~~ 109 (377)
T PRK08599 36 ALIKEMNTYAIRPFDKLKT--IYIGGGTPT---ALSAEQLERLLTAIHRNLPLSGLEEFTFE-ANPGDLTKEKLQVLKDS 109 (377)
T ss_pred HHHHHHHHhhhcCCCceeE--EEeCCCCcc---cCCHHHHHHHHHHHHHhCCCCCCCEEEEE-eCCCCCCHHHHHHHHHc
Confidence 456677655443 2444 333455543 2333 45555666432111 122222 243 3568999999
Q ss_pred CCCeEEEeccCCCCCHHHHHHHHhhCCCcccchhhhhHHHHhcCCCeEEeec--C-CCCChHHHHHHHHH
Q psy11600 87 NVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPMADANVDQYTFHV--E-PVDNVPQVIRQIKE 153 (277)
Q Consensus 87 g~d~i~~H~e~~d~g~~~i~~i~~~~~~~~d~p~~~i~~~~~~g~d~it~H~--E-~~~~~~~~~~~I~~ 153 (277)
|++++++=++..+ +++++.+++... .+-..+-++.+.++|.+.++++. . |.++..++.+.++.
T Consensus 110 G~~rvsiGvqS~~--~~~l~~l~r~~~--~~~~~~~i~~l~~~g~~~v~~dli~GlPgqt~~~~~~~l~~ 175 (377)
T PRK08599 110 GVNRISLGVQTFN--DELLKKIGRTHN--EEDVYEAIANAKKAGFDNISIDLIYALPGQTIEDFKESLAK 175 (377)
T ss_pred CCCEEEEecccCC--HHHHHHcCCCCC--HHHHHHHHHHHHHcCCCcEEEeeecCCCCCCHHHHHHHHHH
Confidence 9999966565544 666666644211 11244556666777755443332 1 22255555555444
No 411
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=79.17 E-value=2.4 Score=38.85 Aligned_cols=69 Identities=20% Similarity=0.243 Sum_probs=42.9
Q ss_pred hHHHHHhhCC-CccEEEeCCCCcCcHHHH---HHccCCC-CCcccccCHHHHHHHHHhhCC-CCeEEEeCCCCccCHHHh
Q psy11600 202 KVKWLRENYP-TLNIEVDGGVGPNTIDEC---AKCLTGF-GGQKFMQDMMPKVKWLRENYP-TLNIEVDGGVGPNTIDEC 275 (277)
Q Consensus 202 kI~~l~~~~~-~~~i~vdGgV~~~tv~~~---~~~gpg~-ggq~F~~~~~~kI~~l~~~~~-~~~I~VDGGI~~~~~~~~ 275 (277)
.++.+++..+ ...|.| ...|.+++ .++|+++ +=..|.+ +.++++.+..+ +..+++=||||++|++++
T Consensus 171 ~v~~~r~~~~~~~~Igv----ev~s~eea~~A~~~gaDyI~ld~~~~---e~l~~~~~~~~~~ipi~AiGGI~~~ni~~~ 243 (268)
T cd01572 171 AVRRARAAAPFTLKIEV----EVETLEQLKEALEAGADIIMLDNMSP---EELREAVALLKGRVLLEASGGITLENIRAY 243 (268)
T ss_pred HHHHHHHhCCCCCeEEE----EECCHHHHHHHHHcCCCEEEECCcCH---HHHHHHHHHcCCCCcEEEECCCCHHHHHHH
Confidence 4666777665 333433 45565554 5567776 2234444 55555555432 567999999999999887
Q ss_pred hC
Q psy11600 276 AK 277 (277)
Q Consensus 276 ~~ 277 (277)
++
T Consensus 244 a~ 245 (268)
T cd01572 244 AE 245 (268)
T ss_pred HH
Confidence 63
No 412
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=79.04 E-value=31 Score=30.28 Aligned_cols=100 Identities=8% Similarity=0.076 Sum_probs=64.0
Q ss_pred HHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEEeccCCCCC
Q psy11600 22 SESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTFHVEPVDNV 101 (277)
Q Consensus 22 ~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~H~e~~d~g 101 (277)
++.+.+.++|++++ ..|+ +.+++++.-++. +++.-... ..|.+-. ...++|++.+=+-.-..-||
T Consensus 71 ~~a~~a~~aGA~Fi--------vsP~--~~~~v~~~~~~~--~i~~iPG~--~TptEi~-~A~~~Ga~~vKlFPA~~~GG 135 (204)
T TIGR01182 71 EQLRQAVDAGAQFI--------VSPG--LTPELAKHAQDH--GIPIIPGV--ATPSEIM-LALELGITALKLFPAEVSGG 135 (204)
T ss_pred HHHHHHHHcCCCEE--------ECCC--CCHHHHHHHHHc--CCcEECCC--CCHHHHH-HHHHCCCCEEEECCchhcCC
Confidence 56777888899993 6676 688999888864 66666644 4566554 56678999985554333457
Q ss_pred HHHHHHHHhhCCC-ccc----chhhhhHHHHhcCCCeEEe
Q psy11600 102 PQVIRQIKEAGMK-VGQ----VLQDWIEPMADANVDQYTF 136 (277)
Q Consensus 102 ~~~i~~i~~~~~~-~~d----~p~~~i~~~~~~g~d~it~ 136 (277)
+..+++++..-.. ++- +..+=+..+.++|+..+.+
T Consensus 136 ~~yikal~~plp~i~~~ptGGV~~~N~~~~l~aGa~~vg~ 175 (204)
T TIGR01182 136 VKMLKALAGPFPQVRFCPTGGINLANVRDYLAAPNVACGG 175 (204)
T ss_pred HHHHHHHhccCCCCcEEecCCCCHHHHHHHHhCCCEEEEE
Confidence 9999999875322 111 1234445555555555444
No 413
>PRK14331 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=78.82 E-value=29 Score=33.82 Aligned_cols=92 Identities=16% Similarity=0.291 Sum_probs=55.4
Q ss_pred ccCcccHHHHHHHHHHcCCCEEEEeccccccccC-CCCC----HHHHHHHHhcCCCCeeeeeeeccCc----HHhHHHHH
Q psy11600 14 NSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPN-LTFG----HPVVKCLRNKIPKAFFETHMMVQNP----QQWIEPMA 84 (277)
Q Consensus 14 ~~d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~-~~~g----~~~v~~l~~~~~~~~~d~Hlmv~~p----~~~i~~l~ 84 (277)
+-+..++-+|++.+.+.|+..+.+ .|.+|... ..++ .+.++.+.+. +.. ..+.+...+| .+.++.+.
T Consensus 174 sr~~e~V~~Ei~~l~~~g~~eI~l--~d~~~~~y~~~~~~~~~~~Ll~~l~~~-~g~-~~i~~~~~~p~~l~~ell~~~~ 249 (437)
T PRK14331 174 SRRLGSILDEVQWLVDDGVKEIHL--IGQNVTAYGKDIGDVPFSELLYAVAEI-DGV-ERIRFTTGHPRDLDEDIIKAMA 249 (437)
T ss_pred cCCHHHHHHHHHHHHHCCCeEEEE--eeeccccccCCCCCCCHHHHHHHHhcC-CCc-cEEEEeccCcccCCHHHHHHHH
Confidence 345667778899888888887544 55444210 0011 2556666552 432 2455555565 34678888
Q ss_pred hc--CCCeEEEeccCCCCCHHHHHHHHhh
Q psy11600 85 DA--NVDQYTFHVEPVDNVPQVIRQIKEA 111 (277)
Q Consensus 85 ~a--g~d~i~~H~e~~d~g~~~i~~i~~~ 111 (277)
++ |+.++ |+-.-.|.+.+++.+++.
T Consensus 250 ~~~~~~~~l--~igiqSgsd~vLk~m~R~ 276 (437)
T PRK14331 250 DIPQVCEHL--HLPFQAGSDRILKLMDRG 276 (437)
T ss_pred cCCccCCce--ecccccCChHHHHHcCCC
Confidence 77 47877 555556678888887664
No 414
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=78.81 E-value=27 Score=31.56 Aligned_cols=125 Identities=14% Similarity=0.150 Sum_probs=65.5
Q ss_pred ccHHHHHHHHHHcCCCEEEEeccccccccCCCCCHH----HHHHHHhcCCCCeeeeeee------ccCcHHh---HHHHH
Q psy11600 18 SNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHP----VVKCLRNKIPKAFFETHMM------VQNPQQW---IEPMA 84 (277)
Q Consensus 18 ~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~----~v~~l~~~~~~~~~d~Hlm------v~~p~~~---i~~l~ 84 (277)
..+.+.++.+++.|.+. +-|.||..- +..+ .|+.+++.--...-+++.+ ...|.+. ++...
T Consensus 71 ~~~~~Yl~~~k~lGf~~--IEiS~G~~~----i~~~~~~rlI~~~~~~g~~v~~EvG~K~~~~~~~~~~~~~i~~~~~~L 144 (237)
T TIGR03849 71 GKFDEYLNECDELGFEA--VEISDGSME----ISLEERCNLIERAKDNGFMVLSEVGKKSPEKDSELTPDDRIKLINKDL 144 (237)
T ss_pred hhHHHHHHHHHHcCCCE--EEEcCCccC----CCHHHHHHHHHHHHhCCCeEeccccccCCcccccCCHHHHHHHHHHHH
Confidence 46778888999999999 999998654 4443 3444442211111111111 2345555 44458
Q ss_pred hcCCCeEEEeccCCCCCHHHHHHHHhhCCCcccchhhhhH-HHHhcCCCeEEeecCCCCChHHHHHHHHHhCCcc
Q psy11600 85 DANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIE-PMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKV 158 (277)
Q Consensus 85 ~ag~d~i~~H~e~~d~g~~~i~~i~~~~~~~~d~p~~~i~-~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~~ 158 (277)
+|||+++ -+|+...|.. --.+......-.+.+. -+...+.+.+.|-+- +......+|++.|-..
T Consensus 145 eAGA~~V--iiEarEsg~~-----~Gi~~~~g~~r~d~v~~i~~~l~~eklifEAp---~k~~q~~~I~~~G~~V 209 (237)
T TIGR03849 145 EAGADYV--IIEGRESGKN-----IGLFDEKGNVKEDELDVLAENVDINKVIFEAP---QKNQQVEFILKFGPDV 209 (237)
T ss_pred HCCCcEE--EEeehhcCCC-----cceeCCCCCCchHHHHHHHhhCChhcEEEECC---CHHHHHHHHHHhCCCc
Confidence 9999999 4454211000 0000001111112222 234567788888764 5555666777765433
No 415
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=78.77 E-value=14 Score=34.81 Aligned_cols=80 Identities=6% Similarity=0.101 Sum_probs=57.0
Q ss_pred HHHHHHhcCCCCeeeeeeecc--Cc--HHhHHHHHhcCCCeEEEeccCCCCCHHHHHHHHhhCCCcc-cch-hhhhHHHH
Q psy11600 54 VVKCLRNKIPKAFFETHMMVQ--NP--QQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVG-QVL-QDWIEPMA 127 (277)
Q Consensus 54 ~v~~l~~~~~~~~~d~Hlmv~--~p--~~~i~~l~~ag~d~i~~H~e~~d~g~~~i~~i~~~~~~~~-d~p-~~~i~~~~ 127 (277)
.++.+|+..|+.||=|-|+.. ++ .++++.+.+.++..++++. |.|..++.+++.....+ .+| ....+.+.
T Consensus 45 ~i~~~~~l~tdkPfGVnl~~~~~~~~~~~~l~vi~e~~v~~V~~~~----G~P~~~~~lk~~Gi~v~~~v~s~~~A~~a~ 120 (320)
T cd04743 45 LLEETAELLGDKPWGVGILGFVDTELRAAQLAVVRAIKPTFALIAG----GRPDQARALEAIGISTYLHVPSPGLLKQFL 120 (320)
T ss_pred HHHHHHHhccCCCeEEEEeccCCCcchHHHHHHHHhcCCcEEEEcC----CChHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 455566544788999998654 33 4578888899999998774 33445788888776643 444 45678889
Q ss_pred hcCCCeEEee
Q psy11600 128 DANVDQYTFH 137 (277)
Q Consensus 128 ~~g~d~it~H 137 (277)
++|||.+.+.
T Consensus 121 ~~GaD~vVaq 130 (320)
T cd04743 121 ENGARKFIFE 130 (320)
T ss_pred HcCCCEEEEe
Confidence 9999988874
No 416
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=78.69 E-value=7.8 Score=36.77 Aligned_cols=66 Identities=18% Similarity=0.236 Sum_probs=47.3
Q ss_pred HHHHHHHHc--CCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEE
Q psy11600 22 SESQNLLDS--GADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTF 93 (277)
Q Consensus 22 ~~~~~l~~~--~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~ 93 (277)
+-++.|.++ ++|++=+|+-.|+-. +-.+.|+++|+.+|+.++-+. -|..|+ ..+.+.++|+|.+-+
T Consensus 110 er~~~L~~a~~~~d~iviD~AhGhs~----~~i~~ik~ir~~~p~~~viaG-NV~T~e-~a~~Li~aGAD~ikV 177 (343)
T TIGR01305 110 EKMTSILEAVPQLKFICLDVANGYSE----HFVEFVKLVREAFPEHTIMAG-NVVTGE-MVEELILSGADIVKV 177 (343)
T ss_pred HHHHHHHhcCCCCCEEEEECCCCcHH----HHHHHHHHHHhhCCCCeEEEe-cccCHH-HHHHHHHcCCCEEEE
Confidence 455666666 499999999999764 345789999999888665554 123343 355778899998843
No 417
>cd08583 PI-PLCc_GDPD_SF_unchar1 Uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipaseand Glycerophosphodiester phosphodiesterases. This subfamily corresponds to a group of uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipase C (PI-PLC), and glycerophosphodiester phosphodiesterases (GP-GDE), and also sphingomyelinases D (SMases D) and similar proteins. They hydrolyze the 3'-5' phosphodiester bonds in different substrates, utilizing a similar mechanism of general base and acid catalysis involving two conserved histidine residues.
Probab=78.68 E-value=15 Score=32.30 Aligned_cols=86 Identities=9% Similarity=0.030 Sum_probs=51.3
Q ss_pred CCCCHHHHHHHHhcCCCCeeeeeeec---cCcHHhHHHHHhcCCCeEEEeccCCCCCHHHHHHHHhhCCCc--ccc-hhh
Q psy11600 48 LTFGHPVVKCLRNKIPKAFFETHMMV---QNPQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKV--GQV-LQD 121 (277)
Q Consensus 48 ~~~g~~~v~~l~~~~~~~~~d~Hlmv---~~p~~~i~~l~~ag~d~i~~H~e~~d~g~~~i~~i~~~~~~~--~d~-p~~ 121 (277)
.+|.++.++.+|+..|....-.-+.. ..+....+.+...|+..++.++.. ..+.+++.+++.+..+ .-+ -..
T Consensus 140 ~SF~~~~L~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~Gl~v~vwTVn~~~ 217 (237)
T cd08583 140 QIYNEEMYEAIMSIYPFKSVIYTLYRQDSIRLDEIIAFCYENGIKAVTISKNY--VNDKLIEKLNKAGIYVYVYTINDLK 217 (237)
T ss_pred EecCHHHHHHHHHhCCCcceeeEeccccccchHHHHHHHHHcCCcEEEechhh--cCHHHHHHHHHCCCEEEEEeCCCHH
Confidence 46888889998887665322222211 233444555566788887655543 3477788877776542 223 244
Q ss_pred hhHHHHhcCCCeEE
Q psy11600 122 WIEPMADANVDQYT 135 (277)
Q Consensus 122 ~i~~~~~~g~d~it 135 (277)
.+..+.+.|+|.|+
T Consensus 218 ~~~~l~~~GVdgii 231 (237)
T cd08583 218 DAQEYKKLGVYGIY 231 (237)
T ss_pred HHHHHHHcCCCEEE
Confidence 56777777777654
No 418
>PRK14336 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=78.68 E-value=11 Score=36.54 Aligned_cols=92 Identities=13% Similarity=0.272 Sum_probs=58.2
Q ss_pred ccCcccHHHHHHHHHHcCCCEEEEecccccccc---CCCC---CHHHHHHHHhcCCCCeeeeeeeccCc----HHhHHHH
Q psy11600 14 NSDLSNLHSESQNLLDSGADYLHLDVMDGTFVP---NLTF---GHPVVKCLRNKIPKAFFETHMMVQNP----QQWIEPM 83 (277)
Q Consensus 14 ~~d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp---~~~~---g~~~v~~l~~~~~~~~~d~Hlmv~~p----~~~i~~l 83 (277)
+-...++-+|++.+.+.|+..+. +.|.+|.- ++.- =.+.++.+++ ++.. ..+.+...+| .+.++.+
T Consensus 152 srs~e~Iv~Ei~~l~~~G~~ei~--l~~~~~~~yg~d~~~~~~l~~Ll~~l~~-~~~~-~~ir~~~~~p~~i~~ell~~l 227 (418)
T PRK14336 152 SRSIAEIGCEVAELVRRGSREVV--LLGQNVDSYGHDLPEKPCLADLLSALHD-IPGL-LRIRFLTSHPKDISQKLIDAM 227 (418)
T ss_pred cCCHHHHHHHHHHHHHCCCeEEE--EEecCccccccCCCCcccHHHHHHHHHh-cCCc-cEEEEeccChhhcCHHHHHHH
Confidence 55667788899999999998854 46655421 1100 1245666665 3543 3566667777 4457777
Q ss_pred Hhc--CCCeEEEeccCCCCCHHHHHHHHhh
Q psy11600 84 ADA--NVDQYTFHVEPVDNVPQVIRQIKEA 111 (277)
Q Consensus 84 ~~a--g~d~i~~H~e~~d~g~~~i~~i~~~ 111 (277)
.+. ++.++ |+-+-.+.+++++.+++.
T Consensus 228 ~~~~~~~~~l--~lglQSgsd~vLk~M~R~ 255 (418)
T PRK14336 228 AHLPKVCRSL--SLPVQAGDDTILAAMRRG 255 (418)
T ss_pred HhcCccCCce--ecCCCcCCHHHHHHhCCC
Confidence 774 46766 655556678888888764
No 419
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=78.66 E-value=44 Score=30.95 Aligned_cols=68 Identities=18% Similarity=0.073 Sum_probs=45.5
Q ss_pred HHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEEeccCCC
Q psy11600 21 HSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTFHVEPVD 99 (277)
Q Consensus 21 ~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~H~e~~d 99 (277)
-.|.+.|.+.|+|++ | .+-.+.- -.++++.+|.+| +.+|-+.. .+.++-+. -.+.|+|+|.-..+.-+
T Consensus 77 ~~Ea~~L~eaGvDiI--D---aT~r~rP--~~~~~~~iK~~~-~~l~MAD~--stleEal~-a~~~Gad~I~TTl~gyT 144 (283)
T cd04727 77 FVEAQILEALGVDMI--D---ESEVLTP--ADEEHHIDKHKF-KVPFVCGA--RNLGEALR-RISEGAAMIRTKGEAGT 144 (283)
T ss_pred HHHHHHHHHcCCCEE--e---ccCCCCc--HHHHHHHHHHHc-CCcEEccC--CCHHHHHH-HHHCCCCEEEecCCCCC
Confidence 678889999999994 4 5554332 357889998876 65555442 34555554 46679999977765433
No 420
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=78.41 E-value=15 Score=33.60 Aligned_cols=77 Identities=21% Similarity=0.214 Sum_probs=52.5
Q ss_pred HHHHHHHhcCC-CCeeeeeeeccCcHHhHHHHHhcCCCeEEEeccCCCCCHHHHHHHHhhCC--Ccccc----hhhhhHH
Q psy11600 53 PVVKCLRNKIP-KAFFETHMMVQNPQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGM--KVGQV----LQDWIEP 125 (277)
Q Consensus 53 ~~v~~l~~~~~-~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~H~e~~d~g~~~i~~i~~~~~--~~~d~----p~~~i~~ 125 (277)
..++..|+..+ +.+ +-+-+.++++ +....++|+|++ -+|.+ +++.++++.+... .|+.+ -.+-++.
T Consensus 166 ~av~~~r~~~~~~~~--Igvev~t~ee-a~~A~~~gaDyI--~ld~~--~~e~lk~~v~~~~~~ipi~AsGGI~~~ni~~ 238 (265)
T TIGR00078 166 KAVKRARAAAPFALK--IEVEVESLEE-AEEAAEAGADII--MLDNM--KPEEIKEAVQLLKGRVLLEASGGITLDNLEE 238 (265)
T ss_pred HHHHHHHHhCCCCCe--EEEEeCCHHH-HHHHHHcCCCEE--EECCC--CHHHHHHHHHHhcCCCcEEEECCCCHHHHHH
Confidence 45778887655 332 4444556655 445678999999 55544 4677777666432 35544 5788899
Q ss_pred HHhcCCCeEEe
Q psy11600 126 MADANVDQYTF 136 (277)
Q Consensus 126 ~~~~g~d~it~ 136 (277)
++++|+|.|++
T Consensus 239 ~a~~Gvd~Isv 249 (265)
T TIGR00078 239 YAETGVDVISS 249 (265)
T ss_pred HHHcCCCEEEe
Confidence 99999999998
No 421
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=78.40 E-value=15 Score=34.18 Aligned_cols=78 Identities=13% Similarity=0.124 Sum_probs=52.0
Q ss_pred HHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEEeccCCCCCHHHHHHHHhhCC--Ccccc----hhhhhHHH
Q psy11600 53 PVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGM--KVGQV----LQDWIEPM 126 (277)
Q Consensus 53 ~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~H~e~~d~g~~~i~~i~~~~~--~~~d~----p~~~i~~~ 126 (277)
+.++.+|+..+..+ +=+-|.++++ +....++|+|.| .+|-|+ |+.+++.-+... ..+.+ ..+-+..+
T Consensus 194 ~av~~~r~~~~~~k--IeVEvetlee-a~eA~~aGaDiI--mLDnms--pe~l~~av~~~~~~~~lEaSGGIt~~ni~~y 266 (294)
T PRK06978 194 AALDAAFALNAGVP--VQIEVETLAQ-LETALAHGAQSV--LLDNFT--LDMMREAVRVTAGRAVLEVSGGVNFDTVRAF 266 (294)
T ss_pred HHHHHHHHhCCCCc--EEEEcCCHHH-HHHHHHcCCCEE--EECCCC--HHHHHHHHHhhcCCeEEEEECCCCHHHHHHH
Confidence 67888887544333 4445566654 445678999999 777655 555555544322 23333 68889999
Q ss_pred HhcCCCeEEee
Q psy11600 127 ADANVDQYTFH 137 (277)
Q Consensus 127 ~~~g~d~it~H 137 (277)
++.|+|+|+.-
T Consensus 267 A~tGVD~IS~g 277 (294)
T PRK06978 267 AETGVDRISIG 277 (294)
T ss_pred HhcCCCEEEeC
Confidence 99999999974
No 422
>PRK13753 dihydropteroate synthase; Provisional
Probab=78.28 E-value=8.1 Score=35.68 Aligned_cols=59 Identities=7% Similarity=0.016 Sum_probs=31.4
Q ss_pred cHHhHHHHHhcCCCeEEEeccCC-CC------------CHHHHHHHHhhCCCcccc---hhhhhHHHHhcCCCeEE
Q psy11600 76 PQQWIEPMADANVDQYTFHVEPV-DN------------VPQVIRQIKEAGMKVGQV---LQDWIEPMADANVDQYT 135 (277)
Q Consensus 76 p~~~i~~l~~ag~d~i~~H~e~~-d~------------g~~~i~~i~~~~~~~~d~---p~~~i~~~~~~g~d~it 135 (277)
..+.++.+.+.|||+|=+=.++. .+ --.+|+++++. ..++.+ -.+.++.-.++|||+|-
T Consensus 27 a~~~a~~m~~~GAdIIDIGgeSTrPga~~vs~eeE~~Rv~pvI~~l~~~-~~~ISIDT~~~~va~~al~aGadiIN 101 (279)
T PRK13753 27 AVTAAIEMLRVGSDVVDVGPAASHPDARPVSPADEIRRIAPLLDALSDQ-MHRVSIDSFQPETQRYALKRGVGYLN 101 (279)
T ss_pred HHHHHHHHHHCCCcEEEECCCCCCCCCCcCCHHHHHHHHHHHHHHHHhC-CCcEEEECCCHHHHHHHHHcCCCEEE
Confidence 34456777889999994334433 22 11455555543 223333 34455555666776543
No 423
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=78.27 E-value=4.1 Score=38.46 Aligned_cols=111 Identities=13% Similarity=0.181 Sum_probs=66.9
Q ss_pred HHHHHHHHcCCCEEEEecccc------ccc----------------cCCCCCHHHHHHHHhcCCCCeeeeeeecc-----
Q psy11600 22 SESQNLLDSGADYLHLDVMDG------TFV----------------PNLTFGHPVVKCLRNKIPKAFFETHMMVQ----- 74 (277)
Q Consensus 22 ~~~~~l~~~~~~~~h~DimDg------~fv----------------p~~~~g~~~v~~l~~~~~~~~~d~Hlmv~----- 74 (277)
+..+++.++|.|. |+|-=| +|. ....|-.++++.+|+.. +.++-+-+-..
T Consensus 146 ~aA~~a~~aGfDg--Veih~ahGyLl~qFlSp~~N~RtD~yGGslenR~Rf~~eii~~ir~~~-~~~v~vRis~~d~~~~ 222 (337)
T PRK13523 146 QAAVRAKEAGFDV--IEIHGAHGYLINEFLSPLSNKRTDEYGGSPENRYRFLREIIDAVKEVW-DGPLFVRISASDYHPG 222 (337)
T ss_pred HHHHHHHHcCCCE--EEEccccchHHHHhcCCccCCcCCCCCCCHHHHHHHHHHHHHHHHHhc-CCCeEEEecccccCCC
Confidence 4455678889999 444322 121 22334467999999974 66666655432
Q ss_pred --CcH---HhHHHHHhcCCCeEEEeccC-----CC---C-CHHHHHHHHhhCCCcccc------hhhhhHHHHhc-CCCe
Q psy11600 75 --NPQ---QWIEPMADANVDQYTFHVEP-----VD---N-VPQVIRQIKEAGMKVGQV------LQDWIEPMADA-NVDQ 133 (277)
Q Consensus 75 --~p~---~~i~~l~~ag~d~i~~H~e~-----~d---~-g~~~i~~i~~~~~~~~d~------p~~~i~~~~~~-g~d~ 133 (277)
+++ +.++.+.++|+|++++|.-. .. + -..+.+.+|+..+.|+-. |+. ++.+.+. ++|.
T Consensus 223 G~~~~e~~~i~~~l~~~gvD~i~vs~g~~~~~~~~~~~~~~~~~~~~ik~~~~ipVi~~G~i~~~~~-a~~~l~~g~~D~ 301 (337)
T PRK13523 223 GLTVQDYVQYAKWMKEQGVDLIDVSSGAVVPARIDVYPGYQVPFAEHIREHANIATGAVGLITSGAQ-AEEILQNNRADL 301 (337)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccHHHHHHHHhhcCCcEEEeCCCCCHHH-HHHHHHcCCCCh
Confidence 233 34678888999999888542 11 1 245677788876665422 444 4444444 4777
Q ss_pred EEe
Q psy11600 134 YTF 136 (277)
Q Consensus 134 it~ 136 (277)
|.+
T Consensus 302 V~~ 304 (337)
T PRK13523 302 IFI 304 (337)
T ss_pred HHh
Confidence 665
No 424
>PRK13305 sgbH 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional
Probab=78.26 E-value=25 Score=31.17 Aligned_cols=69 Identities=9% Similarity=-0.003 Sum_probs=43.4
Q ss_pred eeccCcHHhHHHHHhc--CCCeEEEeccC-CCCCHHHHHHHHhh--CCC------cccchhhhhHHHHhcCCCeEEeecC
Q psy11600 71 MMVQNPQQWIEPMADA--NVDQYTFHVEP-VDNVPQVIRQIKEA--GMK------VGQVLQDWIEPMADANVDQYTFHVE 139 (277)
Q Consensus 71 lmv~~p~~~i~~l~~a--g~d~i~~H~e~-~d~g~~~i~~i~~~--~~~------~~d~p~~~i~~~~~~g~d~it~H~E 139 (277)
|=+.+..+.++.+.+. .++++-+=.+. ..+|+.+|+.+++. ... .+|.|........++|+|++|+|.-
T Consensus 10 LD~~~~~~A~~l~~~l~~~v~~iKVG~~L~~~~G~~~i~~lk~~~~~~~IflDlKl~DIp~tv~~~~~~~Gad~~tv~~~ 89 (218)
T PRK13305 10 LDHTSLEAAQRDVTLLKDHVDIVEAGTILCLNEGLGAVKALREQCPDKIIVADWKVADAGETLAQQAFGAGANWMTIICA 89 (218)
T ss_pred eCCCCHHHHHHHHHHccccCCEEEECHHHHHHhCHHHHHHHHHhCCCCEEEEEeecccChHHHHHHHHHcCCCEEEEecC
Confidence 3334555555544443 23444211111 23499999999997 322 3355988888889999999999975
No 425
>PRK05481 lipoyl synthase; Provisional
Probab=78.22 E-value=12 Score=34.42 Aligned_cols=90 Identities=14% Similarity=0.317 Sum_probs=57.4
Q ss_pred cCcccHHHHHHHHHHcCCCEEEEeccccccccC--CCCCHHHHHHHHhcCCCCeeeeeeeccCcH---HhHHHHHhcCCC
Q psy11600 15 SDLSNLHSESQNLLDSGADYLHLDVMDGTFVPN--LTFGHPVVKCLRNKIPKAFFETHMMVQNPQ---QWIEPMADANVD 89 (277)
Q Consensus 15 ~d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~--~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~---~~i~~l~~ag~d 89 (277)
.+...+.++++.+.+.|+..+|+==-|..-.|. ...=.+.++.+++.+|.+ -+++...+|. +.+..+.++|++
T Consensus 80 ~~~eeI~~ea~~l~~~G~kEI~L~gg~~~d~~~~~~~~l~~Ll~~I~~~~p~i--rI~~l~~~~~~~~e~L~~l~~ag~~ 157 (289)
T PRK05481 80 LDPDEPERVAEAVARMGLKYVVITSVDRDDLPDGGAQHFAETIRAIRELNPGT--TIEVLIPDFRGRMDALLTVLDARPD 157 (289)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEEeeCCCcccccHHHHHHHHHHHHhhCCCc--EEEEEccCCCCCHHHHHHHHhcCcc
Confidence 566777889999999999998875333110111 111246788888766665 3666776653 567778889999
Q ss_pred eEEEeccCCCCCHHHHHHHH
Q psy11600 90 QYTFHVEPVDNVPQVIRQIK 109 (277)
Q Consensus 90 ~i~~H~e~~d~g~~~i~~i~ 109 (277)
.+.+..|+ ++.+.+.++
T Consensus 158 i~~~~~et---s~~vlk~m~ 174 (289)
T PRK05481 158 VFNHNLET---VPRLYKRVR 174 (289)
T ss_pred eeeccccC---hHHHHHHhC
Confidence 88644444 355555554
No 426
>cd08207 RLP_NonPhot Ribulose bisphosphate carboxylase like proteins from nonphototrophic bacteria. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions. The specific function of this subgroup is unknown.
Probab=78.20 E-value=54 Score=31.97 Aligned_cols=117 Identities=15% Similarity=0.189 Sum_probs=76.8
Q ss_pred EeeeccccCcccHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeee-----eccCcH-----
Q psy11600 8 IGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHM-----MVQNPQ----- 77 (277)
Q Consensus 8 ~~~s~~~~d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hl-----mv~~p~----- 77 (277)
-+|.|- +|...+.+..+.+.+.|++.+.+|++ +.|...++.||+ .+++++.+|= +..+|.
T Consensus 214 y~~NiT-~~~~em~~ra~~~~~~G~~~~mv~~~--------~~G~~~l~~l~~-~~~l~IhaHra~~ga~~r~p~~Gis~ 283 (406)
T cd08207 214 YAFNIT-DDIDEMRRNHDLVVEAGGTCVMVSLN--------SVGLSGLAALRR-HSQLPIHGHRNGWGMLTRSPALGISF 283 (406)
T ss_pred EEEecC-CCHHHHHHHHHHHHHhCCCeEEEecc--------ccchHHHHHHHh-cCCceEEECCCcceecccCCCCCCcH
Confidence 345444 66788888888899999999988865 367778999998 5899999883 444443
Q ss_pred -HhHHHHHhcCCCeEEEeccCCCC----CHHHHHHHHhhCCCc--------ccc------hhhhhHHHHhcC-CCeEEe
Q psy11600 78 -QWIEPMADANVDQYTFHVEPVDN----VPQVIRQIKEAGMKV--------GQV------LQDWIEPMADAN-VDQYTF 136 (277)
Q Consensus 78 -~~i~~l~~ag~d~i~~H~e~~d~----g~~~i~~i~~~~~~~--------~d~------p~~~i~~~~~~g-~d~it~ 136 (277)
-+-+.+.-+|+|.+ |+-..-| +.+...++.+....+ +-+ |...-+.+...| .|.+..
T Consensus 284 ~vl~kl~RLaGaD~~--~~~~~~Gkf~~~~~~~~~~~~~~~~p~~~~~k~~~Pv~sgG~~~~~vp~~~~~~G~~Dvi~~ 360 (406)
T cd08207 284 QAYQKLWRLAGVDHL--HVNGLASKFWESDDSVIESARACLTPLGGPDDAAMPVFSSGQWGGQAPPTYRRLGSVDLLYL 360 (406)
T ss_pred HHHHHHHHHcCCCcc--ccCCCcCCcCCCcHHHHHHHHHHhCchhccCCCeeEeccCCCCHhHHHHHHHHhCCCceEEe
Confidence 24455566899999 6554433 333444443332221 111 566666778888 577665
No 427
>TIGR01093 aroD 3-dehydroquinate dehydratase, type I. Type II 3-dehydroquinate dehydratase, designated AroQ, is described by TIGR01088.
Probab=77.98 E-value=24 Score=31.18 Aligned_cols=127 Identities=17% Similarity=0.195 Sum_probs=69.7
Q ss_pred eEeeeccccCcccHHHHHHHHHHcCCCEE--EEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccC--------c
Q psy11600 7 MIGPSILNSDLSNLHSESQNLLDSGADYL--HLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQN--------P 76 (277)
Q Consensus 7 ~~~~s~~~~d~~~l~~~~~~l~~~~~~~~--h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~--------p 76 (277)
+|..|+...+......+++.+ ..|+|.+ =+|-.+...-.+ .-....++++...+++|+-+++-... .
T Consensus 1 ~i~v~~~~~~~~~~~~~~~~~-~~~aD~vElRlD~l~~~~~~~--~~~~~~~~~~~~~~~~piI~T~R~~~eGG~~~~~~ 77 (228)
T TIGR01093 1 KIFVPLTAPDLEEALATAEKI-CKGADIVELRVDLLKDPSSNN--DVDALIEQLSQLRPDKPLIFTIRTISEGGKFPGNE 77 (228)
T ss_pred CEEEEccCCCHHHHHHHHHHh-ccCCCEEEEEechhcccCcHH--HHHHHHHHHHHhcCCCcEEEEECChhhCCCCCCCH
Confidence 356777777777777788887 5688873 345543211100 01234555554336789999888653 3
Q ss_pred HHhHHHHH----hcCCCeEEEeccCCCC---CHHHHHHHHhhCCC----cccc---h-----hhhhHHHHhcCCCeEEee
Q psy11600 77 QQWIEPMA----DANVDQYTFHVEPVDN---VPQVIRQIKEAGMK----VGQV---L-----QDWIEPMADANVDQYTFH 137 (277)
Q Consensus 77 ~~~i~~l~----~ag~d~i~~H~e~~d~---g~~~i~~i~~~~~~----~~d~---p-----~~~i~~~~~~g~d~it~H 137 (277)
++|++.+. ..++|++ .+|..-. -.++++++++.+.+ .|+. | ...+..+.+.|||.+=+=
T Consensus 78 ~~~~~ll~~~~~~~~~d~v--DiEl~~~~~~~~~l~~~~~~~~~kvI~S~H~f~~tp~~~~l~~~~~~~~~~gaDivKia 155 (228)
T TIGR01093 78 EEYLEELKRAADSPGPDFV--DIELFLPDDAVKELINIAKKGGTKIIMSYHDFQKTPSWEEIVERLEKALSYGADIVKIA 155 (228)
T ss_pred HHHHHHHHHHHHhCCCCEE--EEEccCCHHHHHHHHHHHHHCCCEEEEeccCCCCCCCHHHHHHHHHHHHHhCCCEEEEE
Confidence 45555543 4578999 5553211 22233333333322 2332 3 235666677777766554
Q ss_pred c
Q psy11600 138 V 138 (277)
Q Consensus 138 ~ 138 (277)
.
T Consensus 156 ~ 156 (228)
T TIGR01093 156 V 156 (228)
T ss_pred e
Confidence 3
No 428
>PRK04302 triosephosphate isomerase; Provisional
Probab=77.94 E-value=48 Score=29.09 Aligned_cols=166 Identities=16% Similarity=0.181 Sum_probs=81.0
Q ss_pred eeeeccCcHHhHHHHHhc-CCCeEEEeccCCCCCHHHHHHHHhhCCCcccchhhhhHHHHhcCCCeEEee-cCCCCC---
Q psy11600 69 THMMVQNPQQWIEPMADA-NVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPMADANVDQYTFH-VEPVDN--- 143 (277)
Q Consensus 69 ~Hlmv~~p~~~i~~l~~a-g~d~i~~H~e~~d~g~~~i~~i~~~~~~~~d~p~~~i~~~~~~g~d~it~H-~E~~~~--- 143 (277)
+.+.+.-|..++..+.+. +.....-|++..+.|. ...+..++.+.++|+|++.+- .|.-..
T Consensus 37 ~~~~~~p~~~~l~~v~~~~~i~v~aq~~~~~~~G~--------------~tg~~~~~~l~~~G~~~vii~~ser~~~~~e 102 (223)
T PRK04302 37 VRIAVAPQALDIRRVAEEVDIPVYAQHVDPVEPGS--------------HTGHILPEAVKDAGAVGTLINHSERRLTLAD 102 (223)
T ss_pred CEEEEECCHHHHHHHHHhcCCeEEeccCCCCCCCC--------------chhhhHHHHHHHcCCCEEEEeccccccCHHH
Confidence 456666777777766543 3333333433322110 012345778888999876654 231111
Q ss_pred hHHHHHHHHHhCCccceeeCCCCCHHhHHHHHhhcCceEEEEecC----CCC-C-chhhhh-hhhhHHHHHhhCCCccEE
Q psy11600 144 VPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIMTVEP----GFG-G-QKFMQD-MMPKVKWLRENYPTLNIE 216 (277)
Q Consensus 144 ~~~~~~~I~~~g~~~g~~i~p~t~~~~i~~~i~~~d~vl~mav~P----gt~-g-q~~~~~-~l~kI~~l~~~~~~~~i~ 216 (277)
.....+..++.|+..= +..++ .+.+.. +...+. .+++++| ||+ + +...++ ..+.++.+++...++.+.
T Consensus 103 ~~~~v~~a~~~Gl~~I--~~v~~-~~~~~~-~~~~~~-~~I~~~p~~~igt~~~~~~~~~~~i~~~~~~ir~~~~~~pvi 177 (223)
T PRK04302 103 IEAVVERAKKLGLESV--VCVNN-PETSAA-AAALGP-DYVAVEPPELIGTGIPVSKAKPEVVEDAVEAVKKVNPDVKVL 177 (223)
T ss_pred HHHHHHHHHHCCCeEE--EEcCC-HHHHHH-HhcCCC-CEEEEeCccccccCCCCCcCCHHHHHHHHHHHHhccCCCEEE
Confidence 2233334444443322 24444 333333 222221 2345555 222 1 101122 222234455444567888
Q ss_pred EeCCC-CcCcHHHHHHccCCC---CCcccc-cCHHHHHHHHH
Q psy11600 217 VDGGV-GPNTIDECAKCLTGF---GGQKFM-QDMMPKVKWLR 253 (277)
Q Consensus 217 vdGgV-~~~tv~~~~~~gpg~---ggq~F~-~~~~~kI~~l~ 253 (277)
.-||| +.+.+..+.+.|++. |+.... ++..+.++++.
T Consensus 178 ~GggI~~~e~~~~~~~~gadGvlVGsa~l~~~~~~~~~~~~~ 219 (223)
T PRK04302 178 CGAGISTGEDVKAALELGADGVLLASGVVKAKDPEAALRDLV 219 (223)
T ss_pred EECCCCCHHHHHHHHcCCCCEEEEehHHhCCcCHHHHHHHHH
Confidence 89999 556666677777773 666665 45655566554
No 429
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=77.92 E-value=5.3 Score=38.80 Aligned_cols=72 Identities=21% Similarity=0.365 Sum_probs=54.4
Q ss_pred CcccHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccC---cHHhHHHHHhcCCCeE
Q psy11600 16 DLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQN---PQQWIEPMADANVDQY 91 (277)
Q Consensus 16 d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~---p~~~i~~l~~ag~d~i 91 (277)
+...+-+-.++|.+.|+|++-+-=|-|...|+-.+ +.|+.+|+. .++++.+|--... +..|+.. .+||+|.|
T Consensus 154 t~e~yv~~akel~~~g~DSIciKDmaGlltP~~ay--elVk~iK~~-~~~pv~lHtH~TsG~a~m~ylkA-vEAGvD~i 228 (472)
T COG5016 154 TLEYYVELAKELLEMGVDSICIKDMAGLLTPYEAY--ELVKAIKKE-LPVPVELHTHATSGMAEMTYLKA-VEAGVDGI 228 (472)
T ss_pred cHHHHHHHHHHHHHcCCCEEEeecccccCChHHHH--HHHHHHHHh-cCCeeEEecccccchHHHHHHHH-HHhCcchh
Confidence 33445566677888999997777777999998666 889999997 5688888876654 4455653 56899988
No 430
>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)
Probab=77.88 E-value=4.2 Score=38.04 Aligned_cols=32 Identities=19% Similarity=0.156 Sum_probs=22.6
Q ss_pred HHHHHHHHHhh-CCCCeEEEeCCCCccCHHHhh
Q psy11600 245 MMPKVKWLREN-YPTLNIEVDGGVGPNTIDECA 276 (277)
Q Consensus 245 ~~~kI~~l~~~-~~~~~I~VDGGI~~~~~~~~~ 276 (277)
..+.+++..+. .....+++-||||.+|++.++
T Consensus 248 ~~e~l~~av~~~~~~~~lEaSGGIt~~ni~~yA 280 (308)
T PLN02716 248 DVSMLKEAVELINGRFETEASGNVTLDTVHKIG 280 (308)
T ss_pred CHHHHHHHHHhhCCCceEEEECCCCHHHHHHHH
Confidence 45555554443 234669999999999998876
No 431
>TIGR00284 dihydropteroate synthase-related protein. This protein has been found so far only in the Archaea, and in particular in those archaea that lack a bacterial-type dihydropteroate synthase. The central region of this protein shows considerable homology to the amino-terminal half of dihydropteroate synthases, while the carboxyl-terminal region shows homology to the small, uncharacterized protein slr0651 of Synechocystis PCC6803.
Probab=77.81 E-value=74 Score=31.89 Aligned_cols=60 Identities=12% Similarity=0.021 Sum_probs=37.6
Q ss_pred cHHhHHHHHhcCCCeEEEeccCC-CC---CHHHHHHHHhhCCCcccc---hhhhhHHHHhcCCCeEE
Q psy11600 76 PQQWIEPMADANVDQYTFHVEPV-DN---VPQVIRQIKEAGMKVGQV---LQDWIEPMADANVDQYT 135 (277)
Q Consensus 76 p~~~i~~l~~ag~d~i~~H~e~~-d~---g~~~i~~i~~~~~~~~d~---p~~~i~~~~~~g~d~it 135 (277)
..+....+.+.|||+|=+=.++. ++ -.+.|+.+++.+..++.+ -.+.++.-.++||++|-
T Consensus 167 i~~~A~~~~~~GADIIDIG~~st~p~~~~v~~~V~~l~~~~~~pISIDT~~~~v~eaAL~aGAdiIN 233 (499)
T TIGR00284 167 IEGLAARMERDGADMVALGTGSFDDDPDVVKEKVKTALDALDSPVIADTPTLDELYEALKAGASGVI 233 (499)
T ss_pred HHHHHHHHHHCCCCEEEECCCcCCCcHHHHHHHHHHHHhhCCCcEEEeCCCHHHHHHHHHcCCCEEE
Confidence 45567788899999993333333 22 235666666665555544 34566666777988765
No 432
>PRK13352 thiamine biosynthesis protein ThiC; Provisional
Probab=77.69 E-value=74 Score=31.14 Aligned_cols=44 Identities=23% Similarity=0.348 Sum_probs=29.0
Q ss_pred hhhhh---HHHHhcCCCeEEeecCCCCChHHHHHHHHHhCCccceeeCCC
Q psy11600 119 LQDWI---EPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPK 165 (277)
Q Consensus 119 p~~~i---~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~i~p~ 165 (277)
++.++ +.=++.|+|++|+|.. -..+.++.+++.+=.-|+.-+-|
T Consensus 142 ~d~~~~~ie~qa~~GVDfmTiHcG---i~~~~~~~~~~~~R~~giVSRGG 188 (431)
T PRK13352 142 EDDLFDVIEKQAKDGVDFMTIHCG---VTRETLERLKKSGRIMGIVSRGG 188 (431)
T ss_pred HHHHHHHHHHHHHhCCCEEEEccc---hhHHHHHHHHhcCCccCeecCCH
Confidence 44444 4447889999999987 66677777776543345544444
No 433
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=77.67 E-value=42 Score=28.37 Aligned_cols=32 Identities=13% Similarity=0.104 Sum_probs=23.8
Q ss_pred HHHHHHHHHhhCCCCeEEEeCCCCccCHHHhh
Q psy11600 245 MMPKVKWLRENYPTLNIEVDGGVGPNTIDECA 276 (277)
Q Consensus 245 ~~~kI~~l~~~~~~~~I~VDGGI~~~~~~~~~ 276 (277)
.++.++++.+..++..+.+=||||.+|++++.
T Consensus 139 g~~~l~~~~~~~~~~pv~a~GGI~~~~~~~~~ 170 (196)
T TIGR00693 139 GVELLREIAATSIDIPIVAIGGITLENAAEVL 170 (196)
T ss_pred CHHHHHHHHHhcCCCCEEEECCcCHHHHHHHH
Confidence 35667776665555668888999999998764
No 434
>COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism]
Probab=77.64 E-value=13 Score=35.24 Aligned_cols=181 Identities=17% Similarity=0.154 Sum_probs=100.6
Q ss_pred cHHHHHHHHHHcCCCEEEEeccccccccCCCCC---HHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEEec
Q psy11600 19 NLHSESQNLLDSGADYLHLDVMDGTFVPNLTFG---HPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTFHV 95 (277)
Q Consensus 19 ~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g---~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~H~ 95 (277)
.+-++-+..++.|+-. -+.+.=|.= +. ... .+.++.+++. +++.+-+-+= +-..++++++.++|+|++.--.
T Consensus 88 eIle~Ak~ak~~Ga~r-~c~~aagr~-~~-~~~~~i~~~v~~Vk~~-~~le~c~slG-~l~~eq~~~L~~aGvd~ynhNL 162 (335)
T COG0502 88 EILEAAKKAKAAGATR-FCMGAAGRG-PG-RDMEEVVEAIKAVKEE-LGLEVCASLG-MLTEEQAEKLADAGVDRYNHNL 162 (335)
T ss_pred HHHHHHHHHHHcCCce-EEEEEeccC-CC-ccHHHHHHHHHHHHHh-cCcHHhhccC-CCCHHHHHHHHHcChhheeccc
Confidence 3446667778888432 133333432 11 122 2455566643 5555555444 2345678899999999986336
Q ss_pred cCCCCCHHHHHHHHhhCCCcccchhhhhHHHHhcCCCeEEee-cCCCCChHHHHHHHHHhCCccceeeCCCCC--HHh-H
Q psy11600 96 EPVDNVPQVIRQIKEAGMKVGQVLQDWIEPMADANVDQYTFH-VEPVDNVPQVIRQIKEAGMKVGLAIKPKTP--VDV-I 171 (277)
Q Consensus 96 e~~d~g~~~i~~i~~~~~~~~d~p~~~i~~~~~~g~d~it~H-~E~~~~~~~~~~~I~~~g~~~g~~i~p~t~--~~~-i 171 (277)
|+. +.+-+.| +|=| +| +--+.++..++.|++.+.|.-.|.. .+. +
T Consensus 163 eTs---~~~y~~I-------------------------~tt~t~e---dR~~tl~~vk~~Gi~vcsGgI~GlGEs~eDri 211 (335)
T COG0502 163 ETS---PEFYENI-------------------------ITTRTYE---DRLNTLENVREAGIEVCSGGIVGLGETVEDRA 211 (335)
T ss_pred ccC---HHHHccc-------------------------CCCCCHH---HHHHHHHHHHHcCCccccceEecCCCCHHHHH
Confidence 652 2211111 1111 01 2234666677888887776666643 222 2
Q ss_pred HHH--H---hhcCceEEEEecC--CCCCchh----hhhhhhhHHHHHhhCCCccEEEeCCCCcCcHH---HHHHccCC
Q psy11600 172 AEY--I---ESADLVLIMTVEP--GFGGQKF----MQDMMPKVKWLRENYPTLNIEVDGGVGPNTID---ECAKCLTG 235 (277)
Q Consensus 172 ~~~--i---~~~d~vl~mav~P--gt~gq~~----~~~~l~kI~~l~~~~~~~~i~vdGgV~~~tv~---~~~~~gpg 235 (277)
... + ...|.|.++.++| |||-+.. .-+.+.-|...|-.+|+..|-+.||...+.-. .+..+|++
T Consensus 212 ~~l~~L~~l~~pdsVPIn~l~P~~GTPle~~~~~~~~e~lk~IA~~Ri~~P~~~Ir~s~gr~~~~~~~q~~~~~aGan 289 (335)
T COG0502 212 ELLLELANLPTPDSVPINFLNPIPGTPLENAKPLDPFEFLKTIAVARIIMPKSMIRLSAGRETMLPELQALAFMAGAN 289 (335)
T ss_pred HHHHHHHhCCCCCeeeeeeecCCCCCccccCCCCCHHHHHHHHHHHHHHCCcceeEccCCcccccHHHHHHHHHhccc
Confidence 211 1 2278899999997 7876521 12344445555567899999888888665533 35556666
No 435
>COG0191 Fba Fructose/tagatose bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=77.61 E-value=34 Score=31.76 Aligned_cols=129 Identities=15% Similarity=0.162 Sum_probs=95.6
Q ss_pred eeeccccCcccHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeee-----------------
Q psy11600 9 GPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHM----------------- 71 (277)
Q Consensus 9 ~~s~~~~d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hl----------------- 71 (277)
.|=.|..|-..-.+.+.+..+.|..++=+|--.=+|=-|+...-+.++...+. ++.+++=|
T Consensus 76 vPV~lHlDHg~~~~~~~~ai~~GFsSvMiDgS~~~~eENi~~tkevv~~ah~~--gvsVEaElG~~GG~Edg~~~~~~~~ 153 (286)
T COG0191 76 VPVALHLDHGASFEDCKQAIRAGFSSVMIDGSHLPFEENIAITKEVVEFAHAY--GVSVEAELGTLGGEEDGVVLYTDPA 153 (286)
T ss_pred CCEEEECCCCCCHHHHHHHHhcCCceEEecCCcCCHHHHHHHHHHHHHHHHHc--CCcEEEEeccccCccCCcccccchh
Confidence 46677788886666666667789999777666666777888877888777653 55554433
Q ss_pred eccCcHHhHHHHHhcCCCeEEEeccCC---------CCCHHHHHHHHhhCCCcccc------hhhhhHHHHhcCCCeEEe
Q psy11600 72 MVQNPQQWIEPMADANVDQYTFHVEPV---------DNVPQVIRQIKEAGMKVGQV------LQDWIEPMADANVDQYTF 136 (277)
Q Consensus 72 mv~~p~~~i~~l~~ag~d~i~~H~e~~---------d~g~~~i~~i~~~~~~~~d~------p~~~i~~~~~~g~d~it~ 136 (277)
+..+|++..+.....|+|.+.+=+-.. ...+..++.+++.+..|+-+ |.+-|..-+++|+--|-+
T Consensus 154 ~~tdp~ea~~fv~~tgiD~LA~aiGn~HG~Yk~~~p~L~~~~L~~i~~~~~~PlVlHGgSGip~~eI~~aI~~GV~KvNi 233 (286)
T COG0191 154 DLTDPEEALEFVERTGIDALAAAIGNVHGVYKPGNPKLDFDRLKEIQEAVSLPLVLHGGSGIPDEEIREAIKLGVAKVNI 233 (286)
T ss_pred hhCCHHHHHHHHhccCcceeeeeccccccCCCCCCCCCCHHHHHHHHHHhCCCEEEeCCCCCCHHHHHHHHHhCceEEee
Confidence 355788888888888899885543322 23789999999999877533 999999999999999999
Q ss_pred ecC
Q psy11600 137 HVE 139 (277)
Q Consensus 137 H~E 139 (277)
..|
T Consensus 234 ~Td 236 (286)
T COG0191 234 DTD 236 (286)
T ss_pred CcH
Confidence 766
No 436
>PTZ00413 lipoate synthase; Provisional
Probab=77.58 E-value=28 Score=33.77 Aligned_cols=79 Identities=16% Similarity=0.245 Sum_probs=49.8
Q ss_pred cCcccHHHHHHHHHHcCCCEEEEecccccc--ccCCCC--CHHHHHHHHhcCCCCeeeeeeeccCc---HHhHHHHHhcC
Q psy11600 15 SDLSNLHSESQNLLDSGADYLHLDVMDGTF--VPNLTF--GHPVVKCLRNKIPKAFFETHMMVQNP---QQWIEPMADAN 87 (277)
Q Consensus 15 ~d~~~l~~~~~~l~~~~~~~~h~DimDg~f--vp~~~~--g~~~v~~l~~~~~~~~~d~Hlmv~~p---~~~i~~l~~ag 87 (277)
.|.....+.-+...+.|+.+ +=|.-|.= .|.=.+ =.+.|+.+|+..|++.+.+- +.+. .+.++.+.++|
T Consensus 177 lD~eEp~~vA~av~~~Gl~~--~VVTSv~RDDL~D~ga~~~a~~I~~Ir~~~p~~~Ievl--igDf~g~~e~l~~L~eAG 252 (398)
T PTZ00413 177 LDPNEPEKVAKAVAEMGVDY--IVMTMVDRDDLPDGGASHVARCVELIKESNPELLLEAL--VGDFHGDLKSVEKLANSP 252 (398)
T ss_pred CCHHHHHHHHHHHHHcCCCE--EEEEEEcCCCCChhhHHHHHHHHHHHHccCCCCeEEEc--CCccccCHHHHHHHHhcC
Confidence 46666777777788888874 52222221 233112 13678888875566665554 3322 35899999999
Q ss_pred CCeEEEeccC
Q psy11600 88 VDQYTFHVEP 97 (277)
Q Consensus 88 ~d~i~~H~e~ 97 (277)
+|.++-++|+
T Consensus 253 ~dvynHNLET 262 (398)
T PTZ00413 253 LSVYAHNIEC 262 (398)
T ss_pred CCEEeccccc
Confidence 9999755665
No 437
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=77.54 E-value=10 Score=35.02 Aligned_cols=71 Identities=15% Similarity=0.113 Sum_probs=46.9
Q ss_pred cHHHHHHHHHHcCCCEEEEeccccccccC---------CCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCC
Q psy11600 19 NLHSESQNLLDSGADYLHLDVMDGTFVPN---------LTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVD 89 (277)
Q Consensus 19 ~l~~~~~~l~~~~~~~~h~DimDg~fvp~---------~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d 89 (277)
...+-++.|++.|+|++|+--..... +. -.+..+.++.+|+. .++|+-+-=-+.++++..+.+.+.|+|
T Consensus 229 e~~~la~~l~~~G~d~i~vs~g~~~~-~~~~~~~~~~~~~~~~~~~~~ir~~-~~iPVi~~Ggi~t~~~a~~~l~~g~aD 306 (327)
T cd02803 229 EAIEIAKALEEAGVDALHVSGGSYES-PPPIIPPPYVPEGYFLELAEKIKKA-VKIPVIAVGGIRDPEVAEEILAEGKAD 306 (327)
T ss_pred HHHHHHHHHHHcCCCEEEeCCCCCcc-cccccCCCCCCcchhHHHHHHHHHH-CCCCEEEeCCCCCHHHHHHHHHCCCCC
Confidence 33445678899999998876544211 11 13455788999986 678887766666677655555544899
Q ss_pred eE
Q psy11600 90 QY 91 (277)
Q Consensus 90 ~i 91 (277)
.+
T Consensus 307 ~V 308 (327)
T cd02803 307 LV 308 (327)
T ss_pred ee
Confidence 88
No 438
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=77.45 E-value=38 Score=32.14 Aligned_cols=25 Identities=24% Similarity=0.291 Sum_probs=16.7
Q ss_pred HHHHHHHHHhhCCCCeEEEeCCCCc
Q psy11600 245 MMPKVKWLRENYPTLNIEVDGGVGP 269 (277)
Q Consensus 245 ~~~kI~~l~~~~~~~~I~VDGGI~~ 269 (277)
+.+-+.++++...++.|..+|||.-
T Consensus 248 t~~~l~~i~~~~~~ipvia~GGI~~ 272 (352)
T PRK05437 248 TAQSLLEARSLLPDLPIIASGGIRN 272 (352)
T ss_pred HHHHHHHHHHhcCCCeEEEECCCCC
Confidence 3445555555435688999999984
No 439
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2. Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.
Probab=77.35 E-value=46 Score=31.29 Aligned_cols=74 Identities=14% Similarity=0.106 Sum_probs=45.7
Q ss_pred HHHHHHHHHHcCCCEEEEeccccccccCC--CCC--HHHHHHHHhcCCCCeeeeeeec-cCcHHhHHHHHhcCCCeEEEe
Q psy11600 20 LHSESQNLLDSGADYLHLDVMDGTFVPNL--TFG--HPVVKCLRNKIPKAFFETHMMV-QNPQQWIEPMADANVDQYTFH 94 (277)
Q Consensus 20 l~~~~~~l~~~~~~~~h~DimDg~fvp~~--~~g--~~~v~~l~~~~~~~~~d~Hlmv-~~p~~~i~~l~~ag~d~i~~H 94 (277)
..+.++.+ ++.+..+|+..+-...-|+- .|. .+.++.+++. .++|+-+..-- ....+.++.+.++|+|.|+++
T Consensus 133 ~~~~i~~i-~adal~i~ln~~q~~~~p~g~~~f~~~le~i~~i~~~-~~vPVivK~~g~g~~~~~a~~L~~aGvd~I~Vs 210 (333)
T TIGR02151 133 AQEAIDMI-EADALAIHLNVLQELVQPEGDRNFKGWLEKIAEICSQ-LSVPVIVKEVGFGISKEVAKLLADAGVSAIDVA 210 (333)
T ss_pred HHHHHHHh-cCCCEEEcCcccccccCCCCCcCHHHHHHHHHHHHHh-cCCCEEEEecCCCCCHHHHHHHHHcCCCEEEEC
Confidence 55555555 34566667754332222221 131 2678889986 57888876431 134567889999999999887
Q ss_pred c
Q psy11600 95 V 95 (277)
Q Consensus 95 ~ 95 (277)
-
T Consensus 211 g 211 (333)
T TIGR02151 211 G 211 (333)
T ss_pred C
Confidence 4
No 440
>cd08148 RuBisCO_large Ribulose bisphosphate carboxylase large chain. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions.
Probab=77.32 E-value=27 Score=33.48 Aligned_cols=93 Identities=16% Similarity=0.174 Sum_probs=62.8
Q ss_pred EeeeccccCcccHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcC-CCCeeeeeee-----ccCcH----
Q psy11600 8 IGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKI-PKAFFETHMM-----VQNPQ---- 77 (277)
Q Consensus 8 ~~~s~~~~d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~-~~~~~d~Hlm-----v~~p~---- 77 (277)
-+|.|- +|...+.+..+.+.+.|++.+.+|++= .|...++.|++.. .++++.+|-- ..+|.
T Consensus 198 y~~NiT-~~~~em~~ra~~~~~~G~~~~mv~~~~--------~G~~~l~~l~~~~~~~l~IhaHrA~~ga~~~~~~~G~~ 268 (366)
T cd08148 198 YAVNVT-AGTFEIIERAERALELGANMLMVDVLT--------AGFSALQALAEDFEIDLPIHVHRAMHGAVTRSKFHGIS 268 (366)
T ss_pred EEEEcc-CCHHHHHHHHHHHHHhCCCEEEEeccc--------cchHHHHHHHHhCcCCcEEEeccccccccccCCCCCcC
Confidence 345554 666888899999999999999888754 5666789999742 3899999953 33333
Q ss_pred -H-hHHHHHhcCCCeEEEeccCCCC----CHHHHHHHHhh
Q psy11600 78 -Q-WIEPMADANVDQYTFHVEPVDN----VPQVIRQIKEA 111 (277)
Q Consensus 78 -~-~i~~l~~ag~d~i~~H~e~~d~----g~~~i~~i~~~ 111 (277)
. +-+.+.-+|+|.+ |+-..-| ..+.+.++.+.
T Consensus 269 ~~~l~kl~RLaGaD~~--~~~t~~Gk~~~~~~~~~~~~~~ 306 (366)
T cd08148 269 MLVLAKLLRMAGGDFI--HTGTVVGKMALEREEALGIADA 306 (366)
T ss_pred HHHHHHHHHHcCCCcc--ccCCcccCcCCCHHHHHHHHHH
Confidence 2 3444456799999 7665433 55555555444
No 441
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=77.18 E-value=47 Score=29.56 Aligned_cols=54 Identities=11% Similarity=0.098 Sum_probs=37.7
Q ss_pred ccHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcC--CCCeeeeee
Q psy11600 18 SNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKI--PKAFFETHM 71 (277)
Q Consensus 18 ~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~--~~~~~d~Hl 71 (277)
..+++.++.+.+.|.+.+.+....-++.....+.+..++++++.. .++++.+|.
T Consensus 10 ~~~~~~~~~~~~~G~~~vel~~~~~~~~~~~~~~~~~~~~l~~~~~~~gl~ls~h~ 65 (273)
T smart00518 10 GGLYKAFIEAVDIGARSFQLFLGNPRSWKGVRLSEETAEKFKEALKENNIDVSVHA 65 (273)
T ss_pred CcHhHHHHHHHHcCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHcCCCEEEEC
Confidence 357899999999999999998888666433345555566655432 356677764
No 442
>PLN03228 methylthioalkylmalate synthase; Provisional
Probab=76.85 E-value=11 Score=37.71 Aligned_cols=73 Identities=21% Similarity=0.206 Sum_probs=51.2
Q ss_pred ccCcccHHHHHHHHHHcCCCEEEEeccc--cccccCCCCCHHHHHHHHhcCC---CCeeeeeeeccCcHH---hHHHHHh
Q psy11600 14 NSDLSNLHSESQNLLDSGADYLHLDVMD--GTFVPNLTFGHPVVKCLRNKIP---KAFFETHMMVQNPQQ---WIEPMAD 85 (277)
Q Consensus 14 ~~d~~~l~~~~~~l~~~~~~~~h~DimD--g~fvp~~~~g~~~v~~l~~~~~---~~~~d~Hlmv~~p~~---~i~~l~~ 85 (277)
..|+..+.+.++.+.+.|++. +=+-| |...|.-. .+.++.+++.++ ++++.+|.=-..-.. .+.. .+
T Consensus 235 Rtd~efl~~~~~~a~~~Gad~--I~l~DTvG~~tP~~v--~~lV~~l~~~~~~~~~i~I~~H~HND~GlAvANslaA-i~ 309 (503)
T PLN03228 235 RSDKEFLCKILGEAIKAGATS--VGIADTVGINMPHEF--GELVTYVKANTPGIDDIVFSVHCHNDLGLATANTIAG-IC 309 (503)
T ss_pred ccCHHHHHHHHHHHHhcCCCE--EEEecCCCCCCHHHH--HHHHHHHHHHhccccCceeEecccCCcChHHHHHHHH-HH
Confidence 356667788888999999998 67788 66666532 367888887665 467888876544322 3433 37
Q ss_pred cCCCeE
Q psy11600 86 ANVDQY 91 (277)
Q Consensus 86 ag~d~i 91 (277)
+|++++
T Consensus 310 aGa~~V 315 (503)
T PLN03228 310 AGARQV 315 (503)
T ss_pred hCCCEE
Confidence 899998
No 443
>KOG2335|consensus
Probab=76.72 E-value=46 Score=31.78 Aligned_cols=125 Identities=15% Similarity=0.102 Sum_probs=79.5
Q ss_pred EeeeccccCcccHHHHHHHHHHcCCCEEEEecc---------ccccccCCCCCHH----HHHHHHhcCCCCeeeeeeecc
Q psy11600 8 IGPSILNSDLSNLHSESQNLLDSGADYLHLDVM---------DGTFVPNLTFGHP----VVKCLRNKIPKAFFETHMMVQ 74 (277)
Q Consensus 8 ~~~s~~~~d~~~l~~~~~~l~~~~~~~~h~Dim---------Dg~fvp~~~~g~~----~v~~l~~~~~~~~~d~Hlmv~ 74 (277)
+..-+..-|..+|.++.+.+... +|. +|+- -|.|---+...++ +|+.++.. ++.|+.+-+-+.
T Consensus 76 LIvQf~~ndp~~ll~Aa~lv~~y-~D~--idlNcGCPq~~a~~g~yGa~L~~~~eLv~e~V~~v~~~-l~~pVs~KIRI~ 151 (358)
T KOG2335|consen 76 LIVQFGGNDPENLLKAARLVQPY-CDG--IDLNCGCPQKVAKRGGYGAFLMDNPELVGEMVSAVRAN-LNVPVSVKIRIF 151 (358)
T ss_pred eEEEEcCCCHHHHHHHHHHhhhh-cCc--ccccCCCCHHHHhcCCccceeccCHHHHHHHHHHHHhh-cCCCeEEEEEec
Confidence 44456667888999999888876 487 6652 3556544555554 45666664 677777766665
Q ss_pred C-cHH---hHHHHHhcCCCeEEEeccCCC--C------CHHHHHHHHhhCC-Ccccc------hhhhhHHHHhcCCCeEE
Q psy11600 75 N-PQQ---WIEPMADANVDQYTFHVEPVD--N------VPQVIRQIKEAGM-KVGQV------LQDWIEPMADANVDQYT 135 (277)
Q Consensus 75 ~-p~~---~i~~l~~ag~d~i~~H~e~~d--~------g~~~i~~i~~~~~-~~~d~------p~~~i~~~~~~g~d~it 135 (277)
. +++ |.+.+.++|++++|+|--.-+ | --+.|+++|+.-. .|+-+ +.+--..+...|+|-|-
T Consensus 152 ~d~~kTvd~ak~~e~aG~~~ltVHGRtr~~kg~~~~pad~~~i~~v~~~~~~ipviaNGnI~~~~d~~~~~~~tG~dGVM 231 (358)
T KOG2335|consen 152 VDLEKTVDYAKMLEDAGVSLLTVHGRTREQKGLKTGPADWEAIKAVRENVPDIPVIANGNILSLEDVERCLKYTGADGVM 231 (358)
T ss_pred CcHHHHHHHHHHHHhCCCcEEEEecccHHhcCCCCCCcCHHHHHHHHHhCcCCcEEeeCCcCcHHHHHHHHHHhCCceEE
Confidence 3 333 678888999999999965421 1 3567777777654 44432 34444444446666654
Q ss_pred e
Q psy11600 136 F 136 (277)
Q Consensus 136 ~ 136 (277)
.
T Consensus 232 ~ 232 (358)
T KOG2335|consen 232 S 232 (358)
T ss_pred e
Confidence 3
No 444
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=76.64 E-value=13 Score=34.76 Aligned_cols=76 Identities=13% Similarity=0.080 Sum_probs=55.1
Q ss_pred CCeeeeeeeccCcHHhHH---HHHhcCCCeEEEeccCC------CC-----------CHHHHHHHHhhCC--Ccccc---
Q psy11600 64 KAFFETHMMVQNPQQWIE---PMADANVDQYTFHVEPV------DN-----------VPQVIRQIKEAGM--KVGQV--- 118 (277)
Q Consensus 64 ~~~~d~Hlmv~~p~~~i~---~l~~ag~d~i~~H~e~~------d~-----------g~~~i~~i~~~~~--~~~d~--- 118 (277)
..|+-+.|+-.+|+...+ .+.+.|+|.|-+|.-.- .| .-++++++|+... .|+.+
T Consensus 62 e~p~~vQl~g~~p~~~~~aA~~~~~~g~d~IdiN~GCP~~~v~~~g~Gs~Ll~~~~~~~eiv~avr~~~~~~~pVsvKiR 141 (312)
T PRK10550 62 GTLVRIQLLGQYPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREAVPAHLPVTVKVR 141 (312)
T ss_pred CCcEEEEeccCCHHHHHHHHHHHHHcCCCEEEEeCCCCchHHhcCCCchHhhcCHHHHHHHHHHHHHhcCCCcceEEEEE
Confidence 478999999999988754 56678999998886542 11 3456777777652 45544
Q ss_pred --------hhhhhHHHHhcCCCeEEeecC
Q psy11600 119 --------LQDWIEPMADANVDQYTFHVE 139 (277)
Q Consensus 119 --------p~~~i~~~~~~g~d~it~H~E 139 (277)
-.++++.+.++|+|.+++|.-
T Consensus 142 ~g~~~~~~~~~~a~~l~~~Gvd~i~Vh~R 170 (312)
T PRK10550 142 LGWDSGERKFEIADAVQQAGATELVVHGR 170 (312)
T ss_pred CCCCCchHHHHHHHHHHhcCCCEEEECCC
Confidence 235667888999999999975
No 445
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=76.62 E-value=48 Score=31.72 Aligned_cols=141 Identities=16% Similarity=0.237 Sum_probs=86.3
Q ss_pred CCeeeeeeeccCcH-------HhHHHHHhcCCCeEEEeccCCCCCHHHHHHHHhhCCCcc--cc--hhhhhHHHHhcCCC
Q psy11600 64 KAFFETHMMVQNPQ-------QWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVG--QV--LQDWIEPMADANVD 132 (277)
Q Consensus 64 ~~~~d~Hlmv~~p~-------~~i~~l~~ag~d~i~~H~e~~d~g~~~i~~i~~~~~~~~--d~--p~~~i~~~~~~g~d 132 (277)
+.|+.+-=|+..+- +++..|.++||+.+-+=+--++ ..+.++.|++....|+ |. --+..-.-+++|+|
T Consensus 25 ~~Pi~VQSMt~t~T~Dv~atv~Qi~~L~~aGceiVRvav~~~~-~a~al~~I~~~~~iPlvADIHFd~~lAl~a~~~G~~ 103 (360)
T PRK00366 25 DAPIVVQSMTNTDTADVEATVAQIKRLARAGCEIVRVAVPDME-AAAALPEIKKQLPVPLVADIHFDYRLALAAAEAGAD 103 (360)
T ss_pred CCcEEEEecCCCCchhHHHHHHHHHHHHHcCCCEEEEccCCHH-HHHhHHHHHHcCCCCEEEecCCCHHHHHHHHHhCCC
Confidence 45777777766432 3688899999999954432221 4566778888776665 44 33344555888999
Q ss_pred eEEeecCCCCC----hHHHHHHHHHhCCccceeeCCCCCHHhHHHHHhhcCceEEEEecCCCCCchhhhhhhhhHHHHHh
Q psy11600 133 QYTFHVEPVDN----VPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIMTVEPGFGGQKFMQDMMPKVKWLRE 208 (277)
Q Consensus 133 ~it~H~E~~~~----~~~~~~~I~~~g~~~g~~i~p~t~~~~i~~~i~~~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~ 208 (277)
.+-+.+.--+. ...+.+..++.|...-+|.|.|. ++ .++++..+- | ..+.+++..++.++.+.+
T Consensus 104 ~iRINPGNig~~~~~v~~vv~~ak~~~ipIRIGvN~GS-L~--~~~~~~yg~-------~--t~eamveSAl~~~~~le~ 171 (360)
T PRK00366 104 ALRINPGNIGKRDERVREVVEAAKDYGIPIRIGVNAGS-LE--KDLLEKYGE-------P--TPEALVESALRHAKILEE 171 (360)
T ss_pred EEEECCCCCCchHHHHHHHHHHHHHCCCCEEEecCCcc-Ch--HHHHHHcCC-------C--CHHHHHHHHHHHHHHHHH
Confidence 99887651111 22455666777777788888883 32 223333221 1 225677888888877766
Q ss_pred h-CCCccEEE
Q psy11600 209 N-YPTLNIEV 217 (277)
Q Consensus 209 ~-~~~~~i~v 217 (277)
+ +.++.+++
T Consensus 172 ~~f~~iviS~ 181 (360)
T PRK00366 172 LGFDDIKISV 181 (360)
T ss_pred CCCCcEEEEE
Confidence 4 23344443
No 446
>cd00465 URO-D_CIMS_like The URO-D_CIMS_like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases, as well as cobalamine (B12) independent methionine synthases. Despite their sequence similarities, members of this family have clearly different functions. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane, and methionine synthases transfer a methyl group from a folate cofactor to L-homocysteine in a reaction requiring zinc.
Probab=76.57 E-value=59 Score=29.46 Aligned_cols=19 Identities=21% Similarity=0.489 Sum_probs=14.5
Q ss_pred HHHHHHHHHHcCCCEEEEe
Q psy11600 20 LHSESQNLLDSGADYLHLD 38 (277)
Q Consensus 20 l~~~~~~l~~~~~~~~h~D 38 (277)
+.++++.+.++|+|.+-+|
T Consensus 146 ~~~~~~~~~eaG~d~i~i~ 164 (306)
T cd00465 146 ILEYAKTLIEAGAKALQIH 164 (306)
T ss_pred HHHHHHHHHHhCCCEEEEe
Confidence 4566777888899997776
No 447
>PRK14335 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=76.55 E-value=54 Score=32.14 Aligned_cols=93 Identities=12% Similarity=0.188 Sum_probs=53.8
Q ss_pred ccCcccHHHHHHHHHHcCCCEEEEeccccccc----cC----CCCCHHHHHHHHh---cCCCCeeeeeeeccCcH----H
Q psy11600 14 NSDLSNLHSESQNLLDSGADYLHLDVMDGTFV----PN----LTFGHPVVKCLRN---KIPKAFFETHMMVQNPQ----Q 78 (277)
Q Consensus 14 ~~d~~~l~~~~~~l~~~~~~~~h~DimDg~fv----p~----~~~g~~~v~~l~~---~~~~~~~d~Hlmv~~p~----~ 78 (277)
+-...++-+|++.+.+.|+..+. +.|.+|. .+ ..--.+.++.+.+ ...+++ -+.++..+|. +
T Consensus 180 sr~~e~Vv~Ei~~l~~~G~~ei~--l~g~~~~~y~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~-~ir~~s~~p~~i~~e 256 (455)
T PRK14335 180 SRDLDAILQEIDVLSEKGVREIT--LLGQNVNSYRGRDREGNIVTFPQLLRHIVRRAEVTDQIR-WIRFMSSHPKDLSDD 256 (455)
T ss_pred cCCHHHHHHHHHHHHHCCCeEEE--EEeecccccccccccCCccCHHHHHHHHHHhhcccCCce-EEEEeecCcccCCHH
Confidence 44566777899999888988743 3332221 00 0011356666632 112333 2444555655 3
Q ss_pred hHHHHHh--cCCCeEEEeccCCCCCHHHHHHHHhh
Q psy11600 79 WIEPMAD--ANVDQYTFHVEPVDNVPQVIRQIKEA 111 (277)
Q Consensus 79 ~i~~l~~--ag~d~i~~H~e~~d~g~~~i~~i~~~ 111 (277)
.++.+.+ +|+.++ |+-.-.|...+++.+++.
T Consensus 257 ll~~m~~~~~gc~~l--~iglQSgsd~vLk~m~R~ 289 (455)
T PRK14335 257 LIATIAQESRLCRLV--HLPVQHGSNGVLKRMNRS 289 (455)
T ss_pred HHHHHHhCCCCCCeE--EEccCcCCHHHHHHcCCC
Confidence 5777777 478888 665556678888887664
No 448
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=76.52 E-value=43 Score=30.16 Aligned_cols=83 Identities=13% Similarity=0.090 Sum_probs=51.0
Q ss_pred HHHHHHHhcCCCCeeeeeeecc---CcHHh---HHHHHhcCCCeEEEeccCCCCCHHHHHHHHhhCCCcc----cc-h--
Q psy11600 53 PVVKCLRNKIPKAFFETHMMVQ---NPQQW---IEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVG----QV-L-- 119 (277)
Q Consensus 53 ~~v~~l~~~~~~~~~d~Hlmv~---~p~~~---i~~l~~ag~d~i~~H~e~~d~g~~~i~~i~~~~~~~~----d~-p-- 119 (277)
..++.+++..++.|+.+++=.. .|++. ++++.++|++-+ |+|-...-...|+.++.... ++ |. |
T Consensus 62 ~~~~~I~r~~~~~pviaD~~~G~g~~~~~~~~~~~~l~~aGa~gv--~iED~~~~~~~i~ai~~a~i-~ViaRtd~~pq~ 138 (240)
T cd06556 62 YHVRAVRRGAPLALIVADLPFGAYGAPTAAFELAKTFMRAGAAGV--KIEGGEWHIETLQMLTAAAV-PVIAHTGLTPQS 138 (240)
T ss_pred HHHHHHHhhCCCCCEEEeCCCCCCcCHHHHHHHHHHHHHcCCcEE--EEcCcHHHHHHHHHHHHcCC-eEEEEeCCchhh
Confidence 5567777764556777777655 23443 788899999999 87742212234556655431 11 11 2
Q ss_pred --------------------hhhhHHHHhcCCCeEEeec
Q psy11600 120 --------------------QDWIEPMADANVDQYTFHV 138 (277)
Q Consensus 120 --------------------~~~i~~~~~~g~d~it~H~ 138 (277)
.+....+.++|||.+.++.
T Consensus 139 ~~~~gg~~~~~~~~~~~~~ai~Ra~ay~~AGAd~i~~e~ 177 (240)
T cd06556 139 VNTSGGDEGQYRGDEAGEQLIADALAYAPAGADLIVMEC 177 (240)
T ss_pred hhccCCceeeccCHHHHHHHHHHHHHHHHcCCCEEEEcC
Confidence 2335777888999888863
No 449
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=76.49 E-value=71 Score=30.35 Aligned_cols=71 Identities=20% Similarity=0.226 Sum_probs=43.5
Q ss_pred cHHHHHHHHHHcCCCEEEEeccccccccCCCCCH-HHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEEeccC
Q psy11600 19 NLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGH-PVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTFHVEP 97 (277)
Q Consensus 19 ~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~-~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~H~e~ 97 (277)
.--+-++.|.+.|++. +.+ | .|..+=.+ +.++.+++..++..+.++. .-..+.++...++|++.+++-.-+
T Consensus 24 ~k~~ia~~L~~~Gv~~--IEv--G--~p~~~~~~~e~i~~i~~~~~~~~i~~~~--r~~~~di~~a~~~g~~~i~i~~~~ 95 (365)
T TIGR02660 24 EKLAIARALDEAGVDE--LEV--G--IPAMGEEERAVIRAIVALGLPARLMAWC--RARDADIEAAARCGVDAVHISIPV 95 (365)
T ss_pred HHHHHHHHHHHcCCCE--EEE--e--CCCCCHHHHHHHHHHHHcCCCcEEEEEc--CCCHHHHHHHHcCCcCEEEEEEcc
Confidence 3345566778888777 333 2 35544333 6788888755555554432 223556888999999998555433
No 450
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=76.46 E-value=14 Score=34.06 Aligned_cols=80 Identities=10% Similarity=0.123 Sum_probs=65.6
Q ss_pred cccHHHHHHHHHHcCCCEEEEeccc--cccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEEe
Q psy11600 17 LSNLHSESQNLLDSGADYLHLDVMD--GTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTFH 94 (277)
Q Consensus 17 ~~~l~~~~~~l~~~~~~~~h~DimD--g~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~H 94 (277)
+.+.++..+.+++.|+|+|=+=|=- |.|...=.+..+.++++++. .++|+..|==..-|.++++++.+.|+.-|-+.
T Consensus 152 ~T~peea~~Fv~~TgvD~LAvaiGt~HG~yk~~p~Ldf~~L~~I~~~-~~iPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~ 230 (282)
T TIGR01858 152 YTDPQEAKEFVEATGVDSLAVAIGTAHGLYKKTPKLDFDRLAEIREV-VDVPLVLHGASDVPDEDVRRTIELGICKVNVA 230 (282)
T ss_pred cCCHHHHHHHHHHHCcCEEecccCccccCcCCCCccCHHHHHHHHHH-hCCCeEEecCCCCCHHHHHHHHHcCCeEEEeC
Confidence 5677888888999999998888854 66654334556899999987 79999999999999999999999999999555
Q ss_pred ccC
Q psy11600 95 VEP 97 (277)
Q Consensus 95 ~e~ 97 (277)
-|.
T Consensus 231 T~l 233 (282)
T TIGR01858 231 TEL 233 (282)
T ss_pred cHH
Confidence 443
No 451
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=76.42 E-value=18 Score=35.89 Aligned_cols=71 Identities=17% Similarity=0.125 Sum_probs=49.9
Q ss_pred hhhhhhHHHHHhhCCCccEEEeCCCCcCcHHHHHHccCCC------CCccccc--------CHHHHHHHH----HhhCCC
Q psy11600 197 QDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKCLTGF------GGQKFMQ--------DMMPKVKWL----RENYPT 258 (277)
Q Consensus 197 ~~~l~kI~~l~~~~~~~~i~vdGgV~~~tv~~~~~~gpg~------ggq~F~~--------~~~~kI~~l----~~~~~~ 258 (277)
..+++.++++++.++++.+.++.+.+.+++..+.++|+++ +|..|.- ..+.-+.++ ++. .
T Consensus 251 ~~~~~~i~~i~~~~~~~~vi~g~~~t~~~~~~l~~~G~d~i~vg~g~Gs~~ttr~~~~~g~~~~~a~~~~~~~~~~~--~ 328 (475)
T TIGR01303 251 VKMISAIKAVRALDLGVPIVAGNVVSAEGVRDLLEAGANIIKVGVGPGAMCTTRMMTGVGRPQFSAVLECAAEARKL--G 328 (475)
T ss_pred HHHHHHHHHHHHHCCCCeEEEeccCCHHHHHHHHHhCCCEEEECCcCCccccCccccCCCCchHHHHHHHHHHHHHc--C
Confidence 5667778888888889988886689999999999999986 3333321 122223333 222 5
Q ss_pred CeEEEeCCCCc
Q psy11600 259 LNIEVDGGVGP 269 (277)
Q Consensus 259 ~~I~VDGGI~~ 269 (277)
+.|-.||||+.
T Consensus 329 ~~viadGgi~~ 339 (475)
T TIGR01303 329 GHVWADGGVRH 339 (475)
T ss_pred CcEEEeCCCCC
Confidence 77999999984
No 452
>PRK00915 2-isopropylmalate synthase; Validated
Probab=76.14 E-value=8 Score=38.66 Aligned_cols=73 Identities=23% Similarity=0.352 Sum_probs=51.6
Q ss_pred ccCcccHHHHHHHHHHcCCCEEEEeccc--cccccCCCCCHHHHHHHHhcCCC---CeeeeeeeccCcHH---hHHHHHh
Q psy11600 14 NSDLSNLHSESQNLLDSGADYLHLDVMD--GTFVPNLTFGHPVVKCLRNKIPK---AFFETHMMVQNPQQ---WIEPMAD 85 (277)
Q Consensus 14 ~~d~~~l~~~~~~l~~~~~~~~h~DimD--g~fvp~~~~g~~~v~~l~~~~~~---~~~d~Hlmv~~p~~---~i~~l~~ 85 (277)
..|+..+.+.++.+.+.|++. +-+-| |...|+-. .+.++.+++.+++ +++.+|.=-..-.. .+.. .+
T Consensus 145 r~d~~~l~~~~~~~~~~Ga~~--i~l~DTvG~~~P~~~--~~~i~~l~~~~~~~~~v~l~~H~HND~GlAvANslaA-v~ 219 (513)
T PRK00915 145 RTDLDFLCRVVEAAIDAGATT--INIPDTVGYTTPEEF--GELIKTLRERVPNIDKAIISVHCHNDLGLAVANSLAA-VE 219 (513)
T ss_pred CCCHHHHHHHHHHHHHcCCCE--EEEccCCCCCCHHHH--HHHHHHHHHhCCCcccceEEEEecCCCCHHHHHHHHH-HH
Confidence 356677788888889999998 67777 66666633 3678888887765 88888876654332 2333 45
Q ss_pred cCCCeE
Q psy11600 86 ANVDQY 91 (277)
Q Consensus 86 ag~d~i 91 (277)
+|++++
T Consensus 220 aGa~~V 225 (513)
T PRK00915 220 AGARQV 225 (513)
T ss_pred hCCCEE
Confidence 899988
No 453
>PF14806 Coatomer_b_Cpla: Coatomer beta subunit appendage platform
Probab=75.98 E-value=4.2 Score=33.24 Aligned_cols=52 Identities=10% Similarity=0.349 Sum_probs=37.4
Q ss_pred CEEEEeccccccccCCCCCHHHHHHHHhcCC-CCeeeeeeeccCcHHhHHHHHhc
Q psy11600 33 DYLHLDVMDGTFVPNLTFGHPVVKCLRNKIP-KAFFETHMMVQNPQQWIEPMADA 86 (277)
Q Consensus 33 ~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~-~~~~d~Hlmv~~p~~~i~~l~~a 86 (277)
+-+|+|||| |+.--......-+++...|. .-++.++-...++.+|++.+.+.
T Consensus 8 NdIhIdImD--yI~Pa~~~~~~FR~mW~eFEWENKi~V~t~~~dl~~yl~~i~k~ 60 (129)
T PF14806_consen 8 NDIHIDIMD--YIKPATCSDEEFRSMWAEFEWENKISVNTNITDLREYLDHIMKS 60 (129)
T ss_pred ccceEcHHH--hcCcccCCHHHHHHHHHhheeeeeEEEecCCCCHHHHHHHHHHh
Confidence 458999999 55444556666666655443 23678888888999999998875
No 454
>TIGR00190 thiC thiamine biosynthesis protein ThiC. The thiC ortholog is designated thiA in Bacillus subtilis.
Probab=75.78 E-value=82 Score=30.72 Aligned_cols=95 Identities=21% Similarity=0.311 Sum_probs=52.6
Q ss_pred CCceEeeec-cccCcccHHHHHHHH---HHcCCCEEEEeccccccccC-------------CCCCH-HHHHHHHhcCCCC
Q psy11600 4 VQCMIGPSI-LNSDLSNLHSESQNL---LDSGADYLHLDVMDGTFVPN-------------LTFGH-PVVKCLRNKIPKA 65 (277)
Q Consensus 4 ~~~~~~~s~-~~~d~~~l~~~~~~l---~~~~~~~~h~DimDg~fvp~-------------~~~g~-~~v~~l~~~~~~~ 65 (277)
+++++..+| -|.|..++++|++++ .+.|+|. |||=+--.+ +.+|. ++.+...+.. +
T Consensus 59 lrtKVNaNIGtS~~~~d~~~E~~K~~~A~~~GADt----iMDLStGgdl~~iR~~il~~s~vpvGTVPiYqa~~~~~-~- 132 (423)
T TIGR00190 59 LRTKVNANIGTSADTSDIEEEVEKALIAIKYGADT----VMDLSTGGDLDEIRKAILDAVPVPVGTVPIYQAAEKVH-G- 132 (423)
T ss_pred ceeEEEeeecCCCCCCCHHHHHHHHHHHHHcCCCe----EeeccCCCCHHHHHHHHHHcCCCCccCccHHHHHHHhc-C-
Confidence 456777777 678888888888775 5679998 788111111 12221 2222222210 0
Q ss_pred eeeeeeeccCcHHh---HHHHHhcCCCeEEEeccCCCCCHHHHHHHHhh
Q psy11600 66 FFETHMMVQNPQQW---IEPMADANVDQYTFHVEPVDNVPQVIRQIKEA 111 (277)
Q Consensus 66 ~~d~Hlmv~~p~~~---i~~l~~ag~d~i~~H~e~~d~g~~~i~~i~~~ 111 (277)
.+.-+.+... ++.=.+-|+|++|+|.-+.- +.++.+++.
T Consensus 133 ----~~~~mt~d~~~~~ie~qa~dGVDfmTiH~Gi~~---~~~~~~~~~ 174 (423)
T TIGR00190 133 ----AVEDMDEDDMFRAIEKQAKDGVDFMTIHAGVLL---EYVERLKRS 174 (423)
T ss_pred ----ChhhCCHHHHHHHHHHHHHhCCCEEEEccchhH---HHHHHHHhC
Confidence 1112233443 44445669999999976543 455555553
No 455
>PF01717 Meth_synt_2: Cobalamin-independent synthase, Catalytic domain; InterPro: IPR002629 This is a domain of vitamin-B12 independent methionine synthases or 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferases, 2.1.1.14 from EC from bacteria and plants. Plants are the only higher eukaryotes that have the required enzymes for methionine synthesis []. This enzyme catalyses the last step in the production of methionine by transferring a methyl group from 5-methyltetrahydrofolate to homocysteine []. The aligned region makes up the carboxy region of the approximately 750 amino acid protein except in some hypothetical archaeal proteins present in the family, where this region corresponds to the entire length.; GO: 0003871 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity, 0009086 methionine biosynthetic process; PDB: 1U22_A 1U1H_A 1U1U_A 1U1J_A 3BQ5_A 3BQ6_A 1XDJ_B 1XR2_B 1T7L_B 1XPG_B ....
Probab=75.72 E-value=20 Score=33.21 Aligned_cols=78 Identities=22% Similarity=0.316 Sum_probs=41.6
Q ss_pred cHHHHHHHHHHcCCCEEEEeccc-cccccCCCCCH-------HHHHHHHhc--CCCCeeeeeeeccCcHHhHHHHHhcCC
Q psy11600 19 NLHSESQNLLDSGADYLHLDVMD-GTFVPNLTFGH-------PVVKCLRNK--IPKAFFETHMMVQNPQQWIEPMADANV 88 (277)
Q Consensus 19 ~l~~~~~~l~~~~~~~~h~DimD-g~fvp~~~~g~-------~~v~~l~~~--~~~~~~d~Hlmv~~p~~~i~~l~~ag~ 88 (277)
.+.++++.|.+.|+.++.+|==- ..+.+...++. .....+... -.+.++-+|+=-.|....+..+.+.++
T Consensus 155 a~~~ei~~l~~~G~~~iQiDeP~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~H~C~~~~~~~~~~l~~~~v 234 (324)
T PF01717_consen 155 AYREEIRALYDAGCRYIQIDEPALSEGPPDASFDRDEYLDEAVAAEALNRAVKGEDATVGVHVCRGNYPSILPLLADLNV 234 (324)
T ss_dssp HHHHHHHHHHHTT-SEEEEEETCHHCTSCSSHHHHHHHHHHHHHHHHHHHTTSTTTSEEEEEESSSCHCTTHHHHHCSS-
T ss_pred HHHHHHHHHHHCCCCEEEecchHhhcchhhhcccHHHHHHHHHHHHHHHhccCCCCCEEEEEecCccchhhHHHHhhccc
Confidence 35688999999999999999321 11222221100 011122211 135666677666565444567777788
Q ss_pred CeEEEecc
Q psy11600 89 DQYTFHVE 96 (277)
Q Consensus 89 d~i~~H~e 96 (277)
|.+.+.++
T Consensus 235 d~~~lE~~ 242 (324)
T PF01717_consen 235 DAFFLEFA 242 (324)
T ss_dssp SEEEEEET
T ss_pred ceEEeecc
Confidence 87754443
No 456
>TIGR00510 lipA lipoate synthase. The family shows strong sequence conservation.
Probab=75.69 E-value=17 Score=33.91 Aligned_cols=90 Identities=17% Similarity=0.258 Sum_probs=58.3
Q ss_pred CcccHHHHHHHHHHcCCCEEEEeccccccccCCC--CCHHHHHHHHhcCCCCeeeeeeeccCc---HHhHHHHHhcCCCe
Q psy11600 16 DLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLT--FGHPVVKCLRNKIPKAFFETHMMVQNP---QQWIEPMADANVDQ 90 (277)
Q Consensus 16 d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~--~g~~~v~~l~~~~~~~~~d~Hlmv~~p---~~~i~~l~~ag~d~ 90 (277)
|.....++.+.+.+.|+..+++==.|..-.+.-. .=.++++++++..|++. +++.+.++ .+.++.+.++|+|.
T Consensus 92 ~~eei~~~a~~~~~~GlkevvLTsv~~ddl~d~g~~~l~~li~~I~~~~p~i~--Ievl~~d~~g~~e~l~~l~~aG~dv 169 (302)
T TIGR00510 92 DPEEPAKLAETIKDMGLKYVVITSVDRDDLEDGGASHLAECIEAIREKLPNIK--IETLVPDFRGNIAALDILLDAPPDV 169 (302)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEEeecCCCcccccHHHHHHHHHHHHhcCCCCE--EEEeCCcccCCHHHHHHHHHcCchh
Confidence 6667788889999999999776544421112211 12578888887656654 45556554 56789999999998
Q ss_pred EEEeccCCCCCHHHHHHHHh
Q psy11600 91 YTFHVEPVDNVPQVIRQIKE 110 (277)
Q Consensus 91 i~~H~e~~d~g~~~i~~i~~ 110 (277)
+....|. .+.+.+.+|+
T Consensus 170 ~~hnlEt---~~~l~~~vrr 186 (302)
T TIGR00510 170 YNHNLET---VERLTPFVRP 186 (302)
T ss_pred hcccccc---hHHHHHHhCC
Confidence 8644553 3556666653
No 457
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=75.56 E-value=7.8 Score=35.07 Aligned_cols=72 Identities=19% Similarity=0.284 Sum_probs=51.9
Q ss_pred cCcccHHHHHHHHHHcCCCEEEEeccc--cccccCCCCCHHHHHHHHhcCCC--CeeeeeeeccCcHH---hHHHHHhcC
Q psy11600 15 SDLSNLHSESQNLLDSGADYLHLDVMD--GTFVPNLTFGHPVVKCLRNKIPK--AFFETHMMVQNPQQ---WIEPMADAN 87 (277)
Q Consensus 15 ~d~~~l~~~~~~l~~~~~~~~h~DimD--g~fvp~~~~g~~~v~~l~~~~~~--~~~d~Hlmv~~p~~---~i~~l~~ag 87 (277)
.|+..+.+-++++.+.|++. +=+-| |...|.-.. +.++.+|+.+++ +++.+|.=-..-.. .+.. .++|
T Consensus 140 ~~~~~~~~~~~~~~~~G~~~--i~l~DT~G~~~P~~v~--~lv~~l~~~~~~~~i~l~~H~Hn~~GlA~An~laA-i~aG 214 (268)
T cd07940 140 TDLDFLIEVVEAAIEAGATT--INIPDTVGYLTPEEFG--ELIKKLKENVPNIKVPISVHCHNDLGLAVANSLAA-VEAG 214 (268)
T ss_pred CCHHHHHHHHHHHHHcCCCE--EEECCCCCCCCHHHHH--HHHHHHHHhCCCCceeEEEEecCCcchHHHHHHHH-HHhC
Confidence 56777788888899999998 55666 666665332 678899988886 89899887654333 3333 4679
Q ss_pred CCeE
Q psy11600 88 VDQY 91 (277)
Q Consensus 88 ~d~i 91 (277)
+++|
T Consensus 215 ~~~i 218 (268)
T cd07940 215 ARQV 218 (268)
T ss_pred CCEE
Confidence 9988
No 458
>COG0119 LeuA Isopropylmalate/homocitrate/citramalate synthases [Amino acid transport and metabolism]
Probab=75.55 E-value=7.6 Score=37.78 Aligned_cols=74 Identities=22% Similarity=0.366 Sum_probs=55.1
Q ss_pred ccCcccHHHHHHHHHHcCCCEEEEeccc--cccccCCCCCHHHHHHHHhcCC-CCeeeeeeeccCcHHhHHHH--HhcCC
Q psy11600 14 NSDLSNLHSESQNLLDSGADYLHLDVMD--GTFVPNLTFGHPVVKCLRNKIP-KAFFETHMMVQNPQQWIEPM--ADANV 88 (277)
Q Consensus 14 ~~d~~~l~~~~~~l~~~~~~~~h~DimD--g~fvp~~~~g~~~v~~l~~~~~-~~~~d~Hlmv~~p~~~i~~l--~~ag~ 88 (277)
..|+..+-+.++.+.+.|+++ +-+-| |-..|+-.. +.++++++.+| +.++.+|.--..-......+ .++||
T Consensus 142 rt~~~~l~~~~~~~~~~ga~~--i~l~DTvG~~~P~~~~--~~i~~l~~~v~~~~~l~~H~HnD~G~AvANslaAv~aGa 217 (409)
T COG0119 142 RTDPEFLAEVVKAAIEAGADR--INLPDTVGVATPNEVA--DIIEALKANVPNKVILSVHCHNDLGMAVANSLAAVEAGA 217 (409)
T ss_pred cCCHHHHHHHHHHHHHcCCcE--EEECCCcCccCHHHHH--HHHHHHHHhCCCCCeEEEEecCCcchHHHHHHHHHHcCC
Confidence 467778888888899888999 88889 666776333 78999999888 58999997664433333333 45899
Q ss_pred CeE
Q psy11600 89 DQY 91 (277)
Q Consensus 89 d~i 91 (277)
+++
T Consensus 218 ~~v 220 (409)
T COG0119 218 DQV 220 (409)
T ss_pred cEE
Confidence 988
No 459
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=75.48 E-value=8 Score=35.31 Aligned_cols=71 Identities=24% Similarity=0.317 Sum_probs=50.4
Q ss_pred cCcccHHHHHHHHHHcCCCEEEEeccc--cccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcH---HhHHHHHhcCCC
Q psy11600 15 SDLSNLHSESQNLLDSGADYLHLDVMD--GTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQ---QWIEPMADANVD 89 (277)
Q Consensus 15 ~d~~~l~~~~~~l~~~~~~~~h~DimD--g~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~---~~i~~l~~ag~d 89 (277)
.|...+.+.++.+.+.|++. +=+.| |...|.-. .+.++.+|+.++ +++.+|.=-..-. +.+.. .++|++
T Consensus 146 ~~~~~~~~~~~~~~~~Ga~~--i~l~DT~G~~~P~~v--~~lv~~l~~~~~-~~l~~H~Hnd~GlA~aN~laA-~~aGa~ 219 (275)
T cd07937 146 HTLEYYVKLAKELEDMGADS--ICIKDMAGLLTPYAA--YELVKALKKEVG-LPIHLHTHDTSGLAVATYLAA-AEAGVD 219 (275)
T ss_pred CCHHHHHHHHHHHHHcCCCE--EEEcCCCCCCCHHHH--HHHHHHHHHhCC-CeEEEEecCCCChHHHHHHHH-HHhCCC
Confidence 45667788888899999999 66778 66666522 367888898765 8899988654432 33433 367999
Q ss_pred eE
Q psy11600 90 QY 91 (277)
Q Consensus 90 ~i 91 (277)
++
T Consensus 220 ~v 221 (275)
T cd07937 220 IV 221 (275)
T ss_pred EE
Confidence 98
No 460
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=75.45 E-value=9.5 Score=34.42 Aligned_cols=72 Identities=18% Similarity=0.212 Sum_probs=50.4
Q ss_pred cCcccHHHHHHHHHHcCCCEEEEeccc--cccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHH---hHHHHHhcCCC
Q psy11600 15 SDLSNLHSESQNLLDSGADYLHLDVMD--GTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQ---WIEPMADANVD 89 (277)
Q Consensus 15 ~d~~~l~~~~~~l~~~~~~~~h~DimD--g~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~---~i~~l~~ag~d 89 (277)
.++..+.+.++.+.+.|+|. +=+-| |...|.- =.+.++.+|++++..++.+|.=-..-.. .+.. .++|++
T Consensus 138 ~~~~~~~~~~~~~~~~G~d~--i~l~DT~G~~~P~~--v~~lv~~l~~~~~~~~l~~H~Hn~~GlA~AN~laA-i~aGa~ 212 (263)
T cd07943 138 ASPEELAEQAKLMESYGADC--VYVTDSAGAMLPDD--VRERVRALREALDPTPVGFHGHNNLGLAVANSLAA-VEAGAT 212 (263)
T ss_pred CCHHHHHHHHHHHHHcCCCE--EEEcCCCCCcCHHH--HHHHHHHHHHhCCCceEEEEecCCcchHHHHHHHH-HHhCCC
Confidence 45666777788889999999 55678 6666652 2367888888766568888887655333 3433 367999
Q ss_pred eE
Q psy11600 90 QY 91 (277)
Q Consensus 90 ~i 91 (277)
++
T Consensus 213 ~v 214 (263)
T cd07943 213 RI 214 (263)
T ss_pred EE
Confidence 88
No 461
>PRK13352 thiamine biosynthesis protein ThiC; Provisional
Probab=75.42 E-value=85 Score=30.71 Aligned_cols=34 Identities=29% Similarity=0.533 Sum_probs=23.9
Q ss_pred CCceEeeec-cccCcccHHHHHHHH---HHcCCCEEEEeccc
Q psy11600 4 VQCMIGPSI-LNSDLSNLHSESQNL---LDSGADYLHLDVMD 41 (277)
Q Consensus 4 ~~~~~~~s~-~~~d~~~l~~~~~~l---~~~~~~~~h~DimD 41 (277)
++++|..+| -|.|..++++|++++ .+.|+|. |||
T Consensus 59 l~tKVNaNIGtS~~~~d~~~E~~K~~~A~~~GADt----iMD 96 (431)
T PRK13352 59 LRTKVNANIGTSSDISDIEEELEKAKVAVKYGADT----IMD 96 (431)
T ss_pred ceeEEeeeecCCCCCCCHHHHHHHHHHHHHcCCCe----Eee
Confidence 445666655 456777888887764 5679998 788
No 462
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=75.23 E-value=6.4 Score=36.64 Aligned_cols=88 Identities=14% Similarity=0.194 Sum_probs=51.5
Q ss_pred HHHHHHHHhcCCCCeeeeeeeccCcHHhHHHH---HhcCCCeEEEeccCC------CC-----------CHHHHHHHHhh
Q psy11600 52 HPVVKCLRNKIPKAFFETHMMVQNPQQWIEPM---ADANVDQYTFHVEPV------DN-----------VPQVIRQIKEA 111 (277)
Q Consensus 52 ~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l---~~ag~d~i~~H~e~~------d~-----------g~~~i~~i~~~ 111 (277)
....+.+...-...|+-+-|+..||+...+.. .+.|++.|=+-.-.- .| .-++|+++++.
T Consensus 41 ~~~~~~~~~~~~~~p~~~Ql~g~~~~~~~~aa~~~~~~~~~~IDlN~GCP~~~v~~~g~Ga~Ll~~p~~~~~iv~~~~~~ 120 (309)
T PF01207_consen 41 KKTIRLLPFLPNERPLIVQLFGNDPEDLAEAAEIVAELGFDGIDLNMGCPAPKVTKGGAGAALLKDPDLLAEIVKAVRKA 120 (309)
T ss_dssp HHHHHHS-GCC-T-TEEEEEE-S-HHHHHHHHHHHCCTT-SEEEEEE---SHHHHHCT-GGGGGC-HHHHHHHHHHHHHH
T ss_pred cceeecccccccccceeEEEeeccHHHHHHHHHhhhccCCcEEeccCCCCHHHHhcCCcChhhhcChHHhhHHHHhhhcc
Confidence 44555555532235899999999998875443 344777662221110 01 55678888887
Q ss_pred CCCcccc------------hhhhhHHHHhcCCCeEEeecC
Q psy11600 112 GMKVGQV------------LQDWIEPMADANVDQYTFHVE 139 (277)
Q Consensus 112 ~~~~~d~------------p~~~i~~~~~~g~d~it~H~E 139 (277)
...|+.+ ..++++.+.++|++.||+|.=
T Consensus 121 ~~~pvsvKiR~g~~~~~~~~~~~~~~l~~~G~~~i~vH~R 160 (309)
T PF01207_consen 121 VPIPVSVKIRLGWDDSPEETIEFARILEDAGVSAITVHGR 160 (309)
T ss_dssp -SSEEEEEEESECT--CHHHHHHHHHHHHTT--EEEEECS
T ss_pred cccceEEecccccccchhHHHHHHHHhhhcccceEEEecC
Confidence 7666644 467889999999999999973
No 463
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=75.22 E-value=19 Score=33.30 Aligned_cols=78 Identities=15% Similarity=0.174 Sum_probs=51.9
Q ss_pred HHHHHHHhcCCC-CeeeeeeeccCcHHhHHHHHhcCCCeEEEeccCCCCCHHHHHHHHhhCC--Ccccc----hhhhhHH
Q psy11600 53 PVVKCLRNKIPK-AFFETHMMVQNPQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGM--KVGQV----LQDWIEP 125 (277)
Q Consensus 53 ~~v~~l~~~~~~-~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~H~e~~d~g~~~i~~i~~~~~--~~~d~----p~~~i~~ 125 (277)
+.++.+|++.|. .+ +=.-|.++++.. ...++|+|.| .+|-|+ |+.+++.-+.-. ..+.+ ..+-+..
T Consensus 181 ~av~~~r~~~~~~~k--IeVEv~slee~~-ea~~~gaDiI--mLDn~s--~e~l~~av~~~~~~~~leaSGgI~~~ni~~ 253 (281)
T PRK06543 181 EALRHVRAQLGHTTH--VEVEVDRLDQIE-PVLAAGVDTI--MLDNFS--LDDLREGVELVDGRAIVEASGNVNLNTVGA 253 (281)
T ss_pred HHHHHHHHhCCCCCc--EEEEeCCHHHHH-HHHhcCCCEE--EECCCC--HHHHHHHHHHhCCCeEEEEECCCCHHHHHH
Confidence 678888887552 33 334566776555 4567899999 777555 555554444322 23443 6888999
Q ss_pred HHhcCCCeEEee
Q psy11600 126 MADANVDQYTFH 137 (277)
Q Consensus 126 ~~~~g~d~it~H 137 (277)
+++.|+|+|+.-
T Consensus 254 yA~tGVD~Is~g 265 (281)
T PRK06543 254 IASTGVDVISVG 265 (281)
T ss_pred HHhcCCCEEEeC
Confidence 999999999974
No 464
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=75.20 E-value=9.2 Score=34.86 Aligned_cols=71 Identities=20% Similarity=0.270 Sum_probs=50.2
Q ss_pred CcccHHHHHHHHHHcCCCEEEEeccc--cccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHH---hHHHHHhcCCCe
Q psy11600 16 DLSNLHSESQNLLDSGADYLHLDVMD--GTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQ---WIEPMADANVDQ 90 (277)
Q Consensus 16 d~~~l~~~~~~l~~~~~~~~h~DimD--g~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~---~i~~l~~ag~d~ 90 (277)
|+..+.+.++.+.+.|++. +=+-| |.-.|.- -.+.++.+|+.+|++++.+|.=-..-.. .+.. .++|+++
T Consensus 149 ~~~~~~~~~~~~~~~g~~~--i~l~DT~G~~~P~~--v~~lv~~l~~~~~~~~l~~H~Hnd~Gla~An~laA-~~aGa~~ 223 (273)
T cd07941 149 NPEYALATLKAAAEAGADW--LVLCDTNGGTLPHE--IAEIVKEVRERLPGVPLGIHAHNDSGLAVANSLAA-VEAGATQ 223 (273)
T ss_pred CHHHHHHHHHHHHhCCCCE--EEEecCCCCCCHHH--HHHHHHHHHHhCCCCeeEEEecCCCCcHHHHHHHH-HHcCCCE
Confidence 4555667778888899998 55778 5555552 2367889998888899999987655333 3433 4579999
Q ss_pred E
Q psy11600 91 Y 91 (277)
Q Consensus 91 i 91 (277)
+
T Consensus 224 i 224 (273)
T cd07941 224 V 224 (273)
T ss_pred E
Confidence 8
No 465
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=75.13 E-value=62 Score=29.01 Aligned_cols=72 Identities=14% Similarity=0.167 Sum_probs=44.2
Q ss_pred ccHHHHHHHHHHcCCCEEEEeccccccccCCCCCH-HHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEEecc
Q psy11600 18 SNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGH-PVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTFHVE 96 (277)
Q Consensus 18 ~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~-~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~H~e 96 (277)
..-.+-++.|.+.|++. +.+ | .|...=.+ +.++.+++..++..+.++ +.-..+.++...++|++++++-+-
T Consensus 20 ~~k~~i~~~L~~~Gv~~--iE~--g--~p~~~~~~~e~~~~l~~~~~~~~~~~~--~r~~~~~v~~a~~~g~~~i~i~~~ 91 (259)
T cd07939 20 EEKLAIARALDEAGVDE--IEV--G--IPAMGEEEREAIRAIVALGLPARLIVW--CRAVKEDIEAALRCGVTAVHISIP 91 (259)
T ss_pred HHHHHHHHHHHHcCCCE--EEE--e--cCCCCHHHHHHHHHHHhcCCCCEEEEe--ccCCHHHHHHHHhCCcCEEEEEEe
Confidence 34445667788889887 444 2 35543233 577888875455555544 212245688888999999966543
Q ss_pred C
Q psy11600 97 P 97 (277)
Q Consensus 97 ~ 97 (277)
+
T Consensus 92 ~ 92 (259)
T cd07939 92 V 92 (259)
T ss_pred c
Confidence 3
No 466
>PRK14337 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=75.10 E-value=25 Score=34.34 Aligned_cols=92 Identities=12% Similarity=0.250 Sum_probs=55.5
Q ss_pred cccCcccHHHHHHHHHHcCCCEEEEecccccc---ccCC-----CCCHHHHHHHHhcCCCCeeeeeeeccCc----HHhH
Q psy11600 13 LNSDLSNLHSESQNLLDSGADYLHLDVMDGTF---VPNL-----TFGHPVVKCLRNKIPKAFFETHMMVQNP----QQWI 80 (277)
Q Consensus 13 ~~~d~~~l~~~~~~l~~~~~~~~h~DimDg~f---vp~~-----~~g~~~v~~l~~~~~~~~~d~Hlmv~~p----~~~i 80 (277)
-+-++.++-+|++.+.+.|+.. +-+.|.+| -.+. .| .+.++.+.+ ++.+. .+.+...+| .+.+
T Consensus 175 rsr~~e~Iv~Ei~~l~~~G~~e--I~l~~~~~~~yg~d~~~~~~~l-~~Ll~~l~~-~~g~~-~ir~~~~~p~~i~~ell 249 (446)
T PRK14337 175 KSRSSAAVLDECRALVDRGARE--ITLLGQNVNSYGQDKHGDGTSF-AQLLHKVAA-LPGLE-RLRFTTPHPKDIAPEVI 249 (446)
T ss_pred eeCCHHHHHHHHHHHHHCCCeE--EEEEecCccccccCCCCCCccH-HHHHHHHHh-cCCCc-EEEEccCCcccCCHHHH
Confidence 3455667778999999988877 55555333 1111 12 235566654 34432 455656666 4567
Q ss_pred HHHHhc--CCCeEEEeccCCCCCHHHHHHHHhh
Q psy11600 81 EPMADA--NVDQYTFHVEPVDNVPQVIRQIKEA 111 (277)
Q Consensus 81 ~~l~~a--g~d~i~~H~e~~d~g~~~i~~i~~~ 111 (277)
+.+.+. |+.++ |+-+-.+..++++.+++.
T Consensus 250 ~~l~~~~~~~~~l--~iglQSgsd~vLk~M~R~ 280 (446)
T PRK14337 250 EAFGELPNLCPRL--HLPLQSGSDRILKAMGRK 280 (446)
T ss_pred HHHHhCCcccCeE--EECCCCCCHHHHHhCCCC
Confidence 777764 46766 655556667888777553
No 467
>PRK07084 fructose-bisphosphate aldolase; Provisional
Probab=74.84 E-value=32 Score=32.41 Aligned_cols=110 Identities=14% Similarity=0.278 Sum_probs=0.0
Q ss_pred cccHHHHHHHHHHcCCCEEEEeccc--ccc-------ccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcC
Q psy11600 17 LSNLHSESQNLLDSGADYLHLDVMD--GTF-------VPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADAN 87 (277)
Q Consensus 17 ~~~l~~~~~~l~~~~~~~~h~DimD--g~f-------vp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag 87 (277)
+.+.++..+.+++.|+|+|=+-|=- |.| -|++.| +.++++++..+++|+..|==...|.++++.+.+.|
T Consensus 163 ~T~peeA~~Fv~~TgvD~LAvaiGt~HG~Y~~~~~~~~p~Ld~--d~L~~I~~~~~~vPLVLHGgSg~~~~~~~~~~~~g 240 (321)
T PRK07084 163 YTQPEEVEDFVKKTGVDSLAISIGTSHGAYKFKPGQCPPPLRF--DILEEIEKRIPGFPIVLHGSSSVPQEYVKTINEYG 240 (321)
T ss_pred cCCHHHHHHHHHHhCCCEEeeccccccccccCCCCCCCCccCH--HHHHHHHHhcCCCCEEEeCCCCCcHHHHHHHHHhc
Q ss_pred CCeEEEeccCCCCCHHHHHHHHhhCCCcccchhhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHH
Q psy11600 88 VDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKE 153 (277)
Q Consensus 88 ~d~i~~H~e~~d~g~~~i~~i~~~~~~~~d~p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~ 153 (277)
.+.= .... +|++-+...+++|+.-|-+..| --....+.+++
T Consensus 241 ~~~~----~~~G------------------i~~e~~~kai~~GI~KINi~Td---l~~a~~~~~~~ 281 (321)
T PRK07084 241 GKLK----DAIG------------------IPEEQLRKAAKSAVCKINIDSD---GRLAMTAAIRK 281 (321)
T ss_pred Cccc----cCCC------------------CCHHHHHHHHHcCCceeccchH---HHHHHHHHHHH
No 468
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=74.32 E-value=24 Score=32.56 Aligned_cols=79 Identities=14% Similarity=0.156 Sum_probs=51.7
Q ss_pred HHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEEeccCCCCCHHHHHHHHhh--C-CC-cccc----hhhhhH
Q psy11600 53 PVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEA--G-MK-VGQV----LQDWIE 124 (277)
Q Consensus 53 ~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~H~e~~d~g~~~i~~i~~~--~-~~-~~d~----p~~~i~ 124 (277)
+.|+..|+..|..+ -+-+-|.++++.. ...++|+|.| .+|-|+ |+.++.+-+. . .. ..++ -.+-++
T Consensus 176 ~Av~~aR~~~~~~~-kIEVEvesle~~~-eAl~agaDiI--mLDNm~--~e~~~~av~~l~~~~~~~lEaSGgIt~~ni~ 249 (280)
T COG0157 176 EAVRRARAAAPFTK-KIEVEVESLEEAE-EALEAGADII--MLDNMS--PEELKEAVKLLGLAGRALLEASGGITLENIR 249 (280)
T ss_pred HHHHHHHHhCCCCc-eEEEEcCCHHHHH-HHHHcCCCEE--EecCCC--HHHHHHHHHHhccCCceEEEEeCCCCHHHHH
Confidence 57888887655422 2234566776554 5667899999 676554 6666555444 2 11 2233 577889
Q ss_pred HHHhcCCCeEEee
Q psy11600 125 PMADANVDQYTFH 137 (277)
Q Consensus 125 ~~~~~g~d~it~H 137 (277)
.+++.|+|+|+.-
T Consensus 250 ~yA~tGVD~IS~g 262 (280)
T COG0157 250 EYAETGVDVISVG 262 (280)
T ss_pred HHhhcCCCEEEeC
Confidence 9999999999985
No 469
>cd08556 GDPD Glycerophosphodiester phosphodiesterase domain as found in prokaryota and eukaryota, and similar proteins. The typical glycerophosphodiester phosphodiesterase domain (GDPD) consists of a TIM barrel and a small insertion domain named the GDPD-insertion (GDPD-I) domain, which is specific for GDPD proteins. This family corresponds to both typical GDPD domain and GDPD-like domain which lacks the GDPD-I region. Members in this family mainly consist of a large family of prokaryotic and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), and a number of uncharacterized homologs. Sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria are also included in this family. GDPD plays an essential role in glycerol metabolism and catalyzes the hydrolysis of glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcoho
Probab=74.20 E-value=38 Score=27.99 Aligned_cols=128 Identities=20% Similarity=0.228 Sum_probs=77.8
Q ss_pred cccHHHHHHHHHHcCCCEEEEecc---ccccccC---CCCCHHHHHHHHhcCCCCeeeeeeeccC----cH-HhHHHHHh
Q psy11600 17 LSNLHSESQNLLDSGADYLHLDVM---DGTFVPN---LTFGHPVVKCLRNKIPKAFFETHMMVQN----PQ-QWIEPMAD 85 (277)
Q Consensus 17 ~~~l~~~~~~l~~~~~~~~h~Dim---Dg~fvp~---~~~g~~~v~~l~~~~~~~~~d~Hlmv~~----p~-~~i~~l~~ 85 (277)
+.|--+.++...+.|++++-+||. ||.+|=. .+| .++++.+++ +..+.+.++..+ .. ..++.+.+
T Consensus 12 pent~~a~~~a~~~g~~~iE~Dv~~tkDg~~vv~Hdi~tL-~e~l~~~~~---~~~i~leiK~~~~~~~~~~~l~~~i~~ 87 (189)
T cd08556 12 PENTLAAFRKALEAGADGVELDVQLTKDGVLVVIHDIPTL-EEVLELVKG---GVGLNIELKEPTRYPGLEAKVAELLRE 87 (189)
T ss_pred CchHHHHHHHHHHcCCCEEEEEeeEcCCCCEEEEcCCCCH-HHHHHhccc---CcEEEEEECCCCCchhHHHHHHHHHHH
Confidence 467778888888899999999998 8887611 112 234444432 577888888864 22 23555555
Q ss_pred cC-CCeEEEeccCCCCCHHHHHHHHhhCCC-ccc--c---hhhhh--HHHHhcCCCeEEeecCCCCC-hHHHHHHHHHhC
Q psy11600 86 AN-VDQYTFHVEPVDNVPQVIRQIKEAGMK-VGQ--V---LQDWI--EPMADANVDQYTFHVEPVDN-VPQVIRQIKEAG 155 (277)
Q Consensus 86 ag-~d~i~~H~e~~d~g~~~i~~i~~~~~~-~~d--~---p~~~i--~~~~~~g~d~it~H~E~~~~-~~~~~~~I~~~g 155 (277)
.+ .+.+. ...+.+..++.+|+.... +.- . ..... ......|++.+.++.. . .....+.+++.|
T Consensus 88 ~~~~~~v~----i~s~~~~~l~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~---~~~~~~i~~~~~~g 160 (189)
T cd08556 88 YGLEERVV----VSSFDHEALRALKELDPEVPTGLLVDKPPLDPLLAELARALGADAVNPHYK---LLTPELVRAAHAAG 160 (189)
T ss_pred cCCcCCEE----EEeCCHHHHHHHHHhCCCCcEEEEeecCcccchhhhHHHhcCCeEEccChh---hCCHHHHHHHHHcC
Confidence 55 23332 234567889999988533 221 1 22222 2467788998888765 2 245666666654
No 470
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=74.17 E-value=46 Score=31.16 Aligned_cols=122 Identities=18% Similarity=0.176 Sum_probs=85.6
Q ss_pred eeccccCcccHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeee-----------------ee
Q psy11600 10 PSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETH-----------------MM 72 (277)
Q Consensus 10 ~s~~~~d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~H-----------------lm 72 (277)
|=.+..|-..--+.+.+..+.|.+++-+|--.-+|=.|+..--++++.-+.. ++.+++= .+
T Consensus 76 PValHLDHg~~~e~i~~ai~~GftSVM~DgS~l~~eeNi~~T~~vve~Ah~~--gv~VEaElG~vgg~ed~~~~~~~~~~ 153 (307)
T PRK05835 76 PVALHLDHGTTFESCEKAVKAGFTSVMIDASHHAFEENLELTSKVVKMAHNA--GVSVEAELGRLMGIEDNISVDEKDAV 153 (307)
T ss_pred eEEEECCCCCCHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHc--CCEEEEEecccCCccCCccccccccc
Confidence 5567778876677788888889999999977777777887777777776643 3333321 22
Q ss_pred ccCcHHhHHHHHhcCCCeEEEeccCCC----------CCHHHHHHHHhhCCCcccc------hhhhhHHHHhcCCCe
Q psy11600 73 VQNPQQWIEPMADANVDQYTFHVEPVD----------NVPQVIRQIKEAGMKVGQV------LQDWIEPMADANVDQ 133 (277)
Q Consensus 73 v~~p~~~i~~l~~ag~d~i~~H~e~~d----------~g~~~i~~i~~~~~~~~d~------p~~~i~~~~~~g~d~ 133 (277)
..+|++-.+.+.+.|+|.+.+=+-..- .-.+.++.|++....|+-+ |+++++.+-+.|.++
T Consensus 154 ~TdPeeA~~Fv~~TgvD~LAvaiGt~HG~Yk~~~~p~L~f~~L~~I~~~~~iPLVLHGgSGip~e~~~~~~~~g~~~ 230 (307)
T PRK05835 154 LVNPKEAEQFVKESQVDYLAPAIGTSHGAFKFKGEPKLDFERLQEVKRLTNIPLVLHGASAIPDDVRKSYLDAGGDL 230 (307)
T ss_pred CCCHHHHHHHHHhhCCCEEEEccCccccccCCCCCCccCHHHHHHHHHHhCCCEEEeCCCCCchHHhhhhhhhcccc
Confidence 456777777777889999866543322 2567899999987766533 888777777777654
No 471
>TIGR00677 fadh2_euk methylenetetrahydrofolate reductase, eukaryotic type. This protein is an FAD-containing flavoprotein.
Probab=74.13 E-value=72 Score=29.29 Aligned_cols=157 Identities=13% Similarity=0.147 Sum_probs=92.9
Q ss_pred eEeeeccccCcccHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCc-----HHhHH
Q psy11600 7 MIGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNP-----QQWIE 81 (277)
Q Consensus 7 ~~~~s~~~~d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p-----~~~i~ 81 (277)
-+.|-=-..+..++.+.++.+.+.+.++ +.|-+|.--.+..-...+.+.|++. ..++.-+|+-..+- .+++.
T Consensus 5 E~~PPk~~~~~~~~~~~~~~l~~~~p~f--vsvT~~~~~~~~~~t~~~~~~l~~~-~g~~~i~Hltcr~~~~~~l~~~L~ 81 (281)
T TIGR00677 5 EFFPPKTEEGVQNLYERMDRMVASGPLF--IDITWGAGGTTAELTLTIASRAQNV-VGVETCMHLTCTNMPIEMIDDALE 81 (281)
T ss_pred EEeCCCCchHHHHHHHHHHHHhhCCCCE--EEeccCCCCcchhhHHHHHHHHHHh-cCCCeeEEeccCCCCHHHHHHHHH
Confidence 3444333344677888899999888888 8888865433333345678888875 68899999998863 34566
Q ss_pred HHHhcCCCeEEE-eccC-------------CCCCHHHHHHHHhhCCCcccc-----h------------hhhhHHHHhcC
Q psy11600 82 PMADANVDQYTF-HVEP-------------VDNVPQVIRQIKEAGMKVGQV-----L------------QDWIEPMADAN 130 (277)
Q Consensus 82 ~l~~ag~d~i~~-H~e~-------------~d~g~~~i~~i~~~~~~~~d~-----p------------~~~i~~~~~~g 130 (277)
.+.++|++-+-+ =-|. .+...++|+.+|+.....+.+ | .++++.=.++|
T Consensus 82 ~~~~~Gi~niLal~GD~p~~~~~~~~~~~~f~~a~~Li~~i~~~~~~~f~igva~~Pe~Hp~~~~~~~d~~~L~~Ki~aG 161 (281)
T TIGR00677 82 RAYSNGIQNILALRGDPPHIGDDWTEVEGGFQYAVDLVKYIRSKYGDYFCIGVAGYPEGHPEAESVELDLKYLKEKVDAG 161 (281)
T ss_pred HHHHCCCCEEEEECCCCCCCCCCCCCCCCCCcCHHHHHHHHHHhCCCceEEEEEECCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 667889885522 1222 122677889998753221111 3 12444446799
Q ss_pred CCeEEeec----CCCCChHHHHHHHHHhCC--ccceeeCCCCCHH
Q psy11600 131 VDQYTFHV----EPVDNVPQVIRQIKEAGM--KVGLAIKPKTPVD 169 (277)
Q Consensus 131 ~d~it~H~----E~~~~~~~~~~~I~~~g~--~~g~~i~p~t~~~ 169 (277)
|+++.=++ + ...+..+.+++.|. ..=.|+.|-++..
T Consensus 162 A~f~iTQ~~Fd~~---~~~~f~~~~~~~gi~~PIi~GI~pi~s~~ 203 (281)
T TIGR00677 162 ADFIITQLFYDVD---NFLKFVNDCRAIGIDCPIVPGIMPINNYA 203 (281)
T ss_pred CCEeeccceecHH---HHHHHHHHHHHcCCCCCEEeeccccCCHH
Confidence 99765432 2 23344445555432 2334455555544
No 472
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=74.04 E-value=19 Score=33.22 Aligned_cols=78 Identities=14% Similarity=0.182 Sum_probs=65.1
Q ss_pred cccHHHHHHHHHHcCCCEEEEeccc--ccc--ccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEE
Q psy11600 17 LSNLHSESQNLLDSGADYLHLDVMD--GTF--VPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYT 92 (277)
Q Consensus 17 ~~~l~~~~~~l~~~~~~~~h~DimD--g~f--vp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~ 92 (277)
+.+-++..+.+++.|+|+|=+-|=- |.| -|+ +..+.++++++. +++|+..|==...|.++++++.+.|+.-+-
T Consensus 154 ~T~peeA~~Fv~~TgvD~LAvaiGt~HG~y~~~p~--Ld~~~L~~I~~~-~~iPLVlHGgSG~~~e~~~kai~~Gi~KiN 230 (284)
T PRK12737 154 YTNPDAAAEFVERTGIDSLAVAIGTAHGLYKGEPK--LDFERLAEIREK-VSIPLVLHGASGVPDEDVKKAISLGICKVN 230 (284)
T ss_pred CCCHHHHHHHHHHhCCCEEeeccCccccccCCCCc--CCHHHHHHHHHH-hCCCEEEeCCCCCCHHHHHHHHHCCCeEEE
Confidence 5677889999999999999888844 777 355 455789999986 789999999999999999999999999996
Q ss_pred EeccC
Q psy11600 93 FHVEP 97 (277)
Q Consensus 93 ~H~e~ 97 (277)
+.-|.
T Consensus 231 i~T~l 235 (284)
T PRK12737 231 VATEL 235 (284)
T ss_pred eCcHH
Confidence 55443
No 473
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=74.03 E-value=83 Score=29.94 Aligned_cols=72 Identities=13% Similarity=0.209 Sum_probs=48.6
Q ss_pred eccccCcccHH---HHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcC
Q psy11600 11 SILNSDLSNLH---SESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADAN 87 (277)
Q Consensus 11 s~~~~d~~~l~---~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag 87 (277)
|..+-|..+.+ +|+++|+++|++.+-+=+-|-. ..+.++.+++. .++|+.+++-...... + ...++|
T Consensus 24 SMtnt~T~Dv~atv~QI~~L~~aGceiVRvavp~~~-------~A~al~~I~~~-~~iPlVADIHFd~~lA-l-~a~~~g 93 (346)
T TIGR00612 24 SMTNTDTIDIDSTVAQIRALEEAGCDIVRVTVPDRE-------SAAAFEAIKEG-TNVPLVADIHFDYRLA-A-LAMAKG 93 (346)
T ss_pred ecCCCCchhHHHHHHHHHHHHHcCCCEEEEcCCCHH-------HHHhHHHHHhC-CCCCEEEeeCCCcHHH-H-HHHHhc
Confidence 55555555555 6788899999999877665532 23667888885 6788877776653322 2 345678
Q ss_pred CCeEE
Q psy11600 88 VDQYT 92 (277)
Q Consensus 88 ~d~i~ 92 (277)
+|-+-
T Consensus 94 ~dkiR 98 (346)
T TIGR00612 94 VAKVR 98 (346)
T ss_pred cCeEE
Confidence 99884
No 474
>PRK11475 DNA-binding transcriptional activator BglJ; Provisional
Probab=73.98 E-value=18 Score=31.62 Aligned_cols=73 Identities=11% Similarity=0.013 Sum_probs=51.3
Q ss_pred cccHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeE
Q psy11600 17 LSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQY 91 (277)
Q Consensus 17 ~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i 91 (277)
..+-++.++.+.....|.+=+|++|-. .|... |.+.++++++.+|+.++-+=-+..++...+..+.++|++-+
T Consensus 23 ~~~~~~~l~~~~~~~pd~vl~dl~d~~-mp~~~-Gl~~~~~l~~~~p~~~iIvlt~~~~~~~~~~~~~~~Ga~gy 95 (207)
T PRK11475 23 FSSQSSFQDAMSRISFSAVIFSLSAMR-SERRE-GLSCLTELAIKFPRMRRLVIADDDIEARLIGSLSPSPLDGV 95 (207)
T ss_pred eCCHHHHHHHhccCCCCEEEeeccccC-CCCCC-HHHHHHHHHHHCCCCCEEEEeCCCCHHHHHHHHHHcCCeEE
Confidence 345566676666655688777888832 35533 88999999998899887765555556666777778898654
No 475
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=73.97 E-value=16 Score=34.44 Aligned_cols=84 Identities=11% Similarity=0.046 Sum_probs=49.1
Q ss_pred eEeeecccc-------CcccHHHHHHHHHHcCCCEEEEeccc-cccccCCCC---------CHHHHHHHHhcCC----CC
Q psy11600 7 MIGPSILNS-------DLSNLHSESQNLLDSGADYLHLDVMD-GTFVPNLTF---------GHPVVKCLRNKIP----KA 65 (277)
Q Consensus 7 ~~~~s~~~~-------d~~~l~~~~~~l~~~~~~~~h~DimD-g~fvp~~~~---------g~~~v~~l~~~~~----~~ 65 (277)
-+..||.+- .+.++.+.++.+.+ ++ |.+| .-.+||..- =.++++++|+... ++
T Consensus 139 pvivsI~~~~~~~~~~~~~d~~~~~~~~~~-~a-----d~lelN~scP~~~g~~~~~~~~~~~eiv~aVr~~~~~~~~~~ 212 (344)
T PRK05286 139 PLGINIGKNKDTPLEDAVDDYLICLEKLYP-YA-----DYFTVNISSPNTPGLRDLQYGEALDELLAALKEAQAELHGYV 212 (344)
T ss_pred cEEEEEecCCCCCcccCHHHHHHHHHHHHh-hC-----CEEEEEccCCCCCCcccccCHHHHHHHHHHHHHHHhccccCC
Confidence 467788643 23344444444433 24 4455 234565421 1367888888633 27
Q ss_pred eeeeeeecc----CcHHhHHHHHhcCCCeEEEecc
Q psy11600 66 FFETHMMVQ----NPQQWIEPMADANVDQYTFHVE 96 (277)
Q Consensus 66 ~~d~Hlmv~----~p~~~i~~l~~ag~d~i~~H~e 96 (277)
|+-+=|=.. +..+.++.+.++|+|.+++|--
T Consensus 213 PV~vKlsp~~~~~~~~~ia~~l~~~Gadgi~~~nt 247 (344)
T PRK05286 213 PLLVKIAPDLSDEELDDIADLALEHGIDGVIATNT 247 (344)
T ss_pred ceEEEeCCCCCHHHHHHHHHHHHHhCCcEEEEeCC
Confidence 777665422 2445678888899999999953
No 476
>PLN02540 methylenetetrahydrofolate reductase
Probab=73.94 E-value=88 Score=31.89 Aligned_cols=159 Identities=12% Similarity=0.148 Sum_probs=99.2
Q ss_pred eeccccCcccHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccC-----cHHhHHHHH
Q psy11600 10 PSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQN-----PQQWIEPMA 84 (277)
Q Consensus 10 ~s~~~~d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~-----p~~~i~~l~ 84 (277)
|.==.....||-+.+++|.+.+-++ +||-.|.--..-.-...+.+.+++. ..++.-.||-..+ ....+..+.
T Consensus 7 PPKt~~g~~nL~~~~~rl~~~~P~F--isVT~gAgGst~~~Tl~la~~lq~~-~Gie~i~HLTCrd~n~~~L~~~L~~a~ 83 (565)
T PLN02540 7 PPKTEEGVDNLFERMDRMVAHGPLF--CDITWGAGGSTADLTLDIANRMQNM-ICVETMMHLTCTNMPVEKIDHALETIK 83 (565)
T ss_pred CCCCchHHHHHHHHHHHHhccCCCE--EEeCCCCCCCcHHHHHHHHHHHHHh-cCCCeeEEeeecCCCHHHHHHHHHHHH
Confidence 3333445678889999999888888 8998866543333455677777764 6788999999887 334566667
Q ss_pred hcCCCeE-EEeccCC-------------CCCHHHHHHHHhhCC--Ccccc-------h-----------------hhhhH
Q psy11600 85 DANVDQY-TFHVEPV-------------DNVPQVIRQIKEAGM--KVGQV-------L-----------------QDWIE 124 (277)
Q Consensus 85 ~ag~d~i-~~H~e~~-------------d~g~~~i~~i~~~~~--~~~d~-------p-----------------~~~i~ 124 (277)
++|+.-| .+--|.. +...++|+.||+... ..+.+ | .++++
T Consensus 84 ~~GIrNILALrGDpp~~~d~~~~~~g~F~~A~dLV~~Ir~~~gd~f~IgVAGYPEgHpe~~~~~~~~~~~~~~~dl~~Lk 163 (565)
T PLN02540 84 SNGIQNILALRGDPPHGQDKFVQVEGGFACALDLVKHIRSKYGDYFGITVAGYPEAHPDVIGGDGLATPEAYQKDLAYLK 163 (565)
T ss_pred HCCCCEEEEECCCCCCCCCCcCCCCCCcccHHHHHHHHHHhCCCCceEEEeCCCCCCCcccccccccCCCChHHHHHHHH
Confidence 8898755 2233321 116788999998632 22221 1 24555
Q ss_pred HHHhcCCCeEEee----cCCCCChHHHHHHHHHhC--CccceeeCCCCCHHhHHHH
Q psy11600 125 PMADANVDQYTFH----VEPVDNVPQVIRQIKEAG--MKVGLAIKPKTPVDVIAEY 174 (277)
Q Consensus 125 ~~~~~g~d~it~H----~E~~~~~~~~~~~I~~~g--~~~g~~i~p~t~~~~i~~~ 174 (277)
.=+++|||++.=+ .| ...+..+.+++.| +..=.||.|-++...+..+
T Consensus 164 ~KvdAGAdFiITQlfFD~d---~f~~f~~~~r~~Gi~vPIipGImPI~S~k~l~r~ 216 (565)
T PLN02540 164 EKVDAGADLIITQLFYDTD---IFLKFVNDCRQIGITCPIVPGIMPINNYKGFLRM 216 (565)
T ss_pred HHHHcCCCEEeeccccCHH---HHHHHHHHHHhcCCCCCEEeeecccCCHHHHHHH
Confidence 5578999976543 23 3345555666665 4445666666666544443
No 477
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=73.89 E-value=38 Score=31.97 Aligned_cols=117 Identities=15% Similarity=0.169 Sum_probs=62.8
Q ss_pred HHHHHHHHHHcCCCEEEEeccccc----c-cc--CC-------------CCCHHHHHHHHhcCC-CCeeeeeeeccC---
Q psy11600 20 LHSESQNLLDSGADYLHLDVMDGT----F-VP--NL-------------TFGHPVVKCLRNKIP-KAFFETHMMVQN--- 75 (277)
Q Consensus 20 l~~~~~~l~~~~~~~~h~DimDg~----f-vp--~~-------------~~g~~~v~~l~~~~~-~~~~d~Hlmv~~--- 75 (277)
+.+..+++.++|.|.+-+=.--|- | .| |- .|-.++++.+|+... ++++-+=|-..+
T Consensus 143 f~~AA~ra~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~vg~~~~v~iRl~~~~~~~ 222 (343)
T cd04734 143 FADAARRCQAGGLDGVELQAAHGHLIDQFLSPLTNRRTDEYGGSLENRMRFLLEVLAAVRAAVGPDFIVGIRISGDEDTE 222 (343)
T ss_pred HHHHHHHHHHcCCCEEEEccccchHHHHhhCCCcCCCCCcCCCCHHHHhHHHHHHHHHHHHHcCCCCeEEEEeehhhccC
Confidence 334556678899999543332221 1 22 21 333588999998742 333333322211
Q ss_pred ----cH---HhHHHHHhcC-CCeEEEeccC---C----------CC--C--HHHHHHHHhhCCCcccc------hhhhhH
Q psy11600 76 ----PQ---QWIEPMADAN-VDQYTFHVEP---V----------DN--V--PQVIRQIKEAGMKVGQV------LQDWIE 124 (277)
Q Consensus 76 ----p~---~~i~~l~~ag-~d~i~~H~e~---~----------d~--g--~~~i~~i~~~~~~~~d~------p~~~i~ 124 (277)
++ +.++.+.++| +|++++|.-. . .. + ...++.+|+..+.|+-. |+..-+
T Consensus 223 ~G~~~~e~~~~~~~l~~~G~vd~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~ipvi~~G~i~~~~~~~~ 302 (343)
T cd04734 223 GGLSPDEALEIAARLAAEGLIDYVNVSAGSYYTLLGLAHVVPSMGMPPGPFLPLAARIKQAVDLPVFHAGRIRDPAEAEQ 302 (343)
T ss_pred CCCCHHHHHHHHHHHHhcCCCCEEEeCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHcCCCEEeeCCCCCHHHHHH
Confidence 22 3467888898 8999885211 0 00 1 35566677766554422 454444
Q ss_pred HHHhcCCCeEEe
Q psy11600 125 PMADANVDQYTF 136 (277)
Q Consensus 125 ~~~~~g~d~it~ 136 (277)
.+.+-++|.|.+
T Consensus 303 ~l~~~~~D~V~~ 314 (343)
T cd04734 303 ALAAGHADMVGM 314 (343)
T ss_pred HHHcCCCCeeee
Confidence 444445777666
No 478
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=73.74 E-value=38 Score=32.09 Aligned_cols=72 Identities=7% Similarity=0.153 Sum_probs=39.7
Q ss_pred HhHHHHHhcCCCeEEEeccCCCCCHHHHHHHHhhCCCcccchhhhhHHHHhcCCCeEEeec--C-CCCChHHHHHHHHH
Q psy11600 78 QWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPMADANVDQYTFHV--E-PVDNVPQVIRQIKE 153 (277)
Q Consensus 78 ~~i~~l~~ag~d~i~~H~e~~d~g~~~i~~i~~~~~~~~d~p~~~i~~~~~~g~d~it~H~--E-~~~~~~~~~~~I~~ 153 (277)
+.++.+.++|++++++=+++ +.+++++.+++.... +-..+-++.+.++|.+.+++.. . |.++..++.+.++.
T Consensus 109 e~l~~l~~~G~~rvslGvQS--~~~~~L~~l~R~~s~--~~~~~a~~~l~~~g~~~v~~dli~GlPgqt~~~~~~tl~~ 183 (375)
T PRK05628 109 EFFAALRAAGFTRVSLGMQS--AAPHVLAVLDRTHTP--GRAVAAAREARAAGFEHVNLDLIYGTPGESDDDWRASLDA 183 (375)
T ss_pred HHHHHHHHcCCCEEEEeccc--CCHHHHHHcCCCCCH--HHHHHHHHHHHHcCCCcEEEEEeccCCCCCHHHHHHHHHH
Confidence 46899999999999555554 446666666443211 1133455566666666444332 1 22355555444443
No 479
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=73.73 E-value=70 Score=28.95 Aligned_cols=115 Identities=16% Similarity=0.243 Sum_probs=80.2
Q ss_pred cHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEEeccCC
Q psy11600 19 NLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTFHVEPV 98 (277)
Q Consensus 19 ~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~H~e~~ 98 (277)
+-.+..+...+.|+.|+|+==.||-|.+. .-..+.++++.+. ++.++.+.==+. -.+.++.+.++|++++.+=--+.
T Consensus 32 ~P~~~a~~~~~~Ga~~lHlVDLdgA~~g~-~~n~~~i~~i~~~-~~~~vQvGGGIR-s~~~v~~ll~~G~~rViiGt~av 108 (241)
T COG0106 32 DPLEVAKKWSDQGAEWLHLVDLDGAKAGG-PRNLEAIKEILEA-TDVPVQVGGGIR-SLEDVEALLDAGVARVIIGTAAV 108 (241)
T ss_pred CHHHHHHHHHHcCCcEEEEeeccccccCC-cccHHHHHHHHHh-CCCCEEeeCCcC-CHHHHHHHHHCCCCEEEEeccee
Confidence 34466677788899999987778888632 3456889999985 666666554443 44568888889999996554332
Q ss_pred CCCHHHHHHHHhhC-CC-cc--cc-----------------hhhhhHHHHhcCCCeEEee
Q psy11600 99 DNVPQVIRQIKEAG-MK-VG--QV-----------------LQDWIEPMADANVDQYTFH 137 (277)
Q Consensus 99 d~g~~~i~~i~~~~-~~-~~--d~-----------------p~~~i~~~~~~g~d~it~H 137 (277)
. -|++++++.+.. .. .+ |+ +.+.++.|.+.|+..+.+|
T Consensus 109 ~-~p~~v~~~~~~~g~rivv~lD~r~g~vav~GW~e~s~~~~~~l~~~~~~~g~~~ii~T 167 (241)
T COG0106 109 K-NPDLVKELCEEYGDRIVVALDARDGKVAVSGWQEDSGVELEELAKRLEEVGLAHILYT 167 (241)
T ss_pred c-CHHHHHHHHHHcCCcEEEEEEccCCccccccccccccCCHHHHHHHHHhcCCCeEEEE
Confidence 2 577777776653 32 22 22 7788888888888888876
No 480
>PF05853 DUF849: Prokaryotic protein of unknown function (DUF849); InterPro: IPR008567 This family consists of several hypothetical prokaryotic proteins with no known function.; PDB: 3C6C_A 2Y7G_B 2Y7F_B 2Y7D_D 2Y7E_B 3LOT_A 3FA5_B 3NO5_C 3E02_A 3E49_B ....
Probab=73.53 E-value=9.5 Score=34.91 Aligned_cols=112 Identities=13% Similarity=0.151 Sum_probs=64.6
Q ss_pred cCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEEecc-CCCC--------CHHHHHHHHhh-CCCcccc---------hhh
Q psy11600 61 KIPKAFFETHMMVQNPQQWIEPMADANVDQYTFHVE-PVDN--------VPQVIRQIKEA-GMKVGQV---------LQD 121 (277)
Q Consensus 61 ~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~H~e-~~d~--------g~~~i~~i~~~-~~~~~d~---------p~~ 121 (277)
.+|++|+.. ....+....+.++||..+|+|.- ..|| --++++.||+. +...+.. +++
T Consensus 17 ~~P~lP~tp----eEia~~A~~c~~AGAa~vH~H~R~~~~G~~s~d~~~~~e~~~~IR~~~pd~iv~~Ttg~~~~~~~~~ 92 (272)
T PF05853_consen 17 DNPALPITP----EEIAADAVACYEAGAAIVHIHARDDEDGRPSLDPELYAEVVEAIRAACPDLIVQPTTGGGGGPDPEE 92 (272)
T ss_dssp TSTTS--SH----HHHHHHHHHHHHHTESEEEE-EE-TTTS-EE--HHHHHHHHHHHHHHSTTSEEEEESSTTTTSGHHH
T ss_pred cCCCCCCCH----HHHHHHHHHHHHcCCcEEEeecCCCCCCCcCCCHHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCHHH
Confidence 346666532 22233455667889999999988 7776 45788889998 4444432 566
Q ss_pred hhHHHHhcCCCeEEeecCCC-------------CChHHHHHHHHHhCCccceeeCCCCCHHhHHHHHh
Q psy11600 122 WIEPMADANVDQYTFHVEPV-------------DNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIE 176 (277)
Q Consensus 122 ~i~~~~~~g~d~it~H~E~~-------------~~~~~~~~~I~~~g~~~g~~i~p~t~~~~i~~~i~ 176 (277)
.++.+....+|+.|+-.-.. ....+..+.+++.|.+..+.+----.+..+..+++
T Consensus 93 R~~~v~~~~pd~asl~~gs~n~~~~~~~~~n~~~~~~~~~~~~~e~Gi~pe~ev~d~~~l~~~~~l~~ 160 (272)
T PF05853_consen 93 RLAHVEAWKPDMASLNPGSMNFGTRDRVYINTPADARELARRMRERGIKPEIEVFDPGHLRNARRLIE 160 (272)
T ss_dssp HCTHHHHH--SEEEEE-S-EEESGGCSEE---HHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCeEEecccccccccCCceecCCHHHHHHHHHHHHHcCCeEEEEEEcHHHHHHHHHHHH
Confidence 66666655777777754300 01336777788888777777644334444555544
No 481
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=73.52 E-value=69 Score=28.76 Aligned_cols=111 Identities=11% Similarity=0.185 Sum_probs=69.4
Q ss_pred HHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEEeccCCCC
Q psy11600 21 HSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTFHVEPVDN 100 (277)
Q Consensus 21 ~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~H~e~~d~ 100 (277)
-+..+.+++.|++++|+==.|+.+- +-.-..++++++.+. + .|+.+.==+.+. +.++.+.++|++.+.+=-++..
T Consensus 33 ~~~A~~~~~~ga~~lhivDLd~a~~-g~~~n~~~i~~i~~~-~-~~v~vGGGIrs~-e~~~~~l~~Ga~rvvigT~a~~- 107 (241)
T PRK14114 33 AELVEKLIEEGFTLIHVVDLSKAIE-NSVENLPVLEKLSEF-A-EHIQIGGGIRSL-DYAEKLRKLGYRRQIVSSKVLE- 107 (241)
T ss_pred HHHHHHHHHCCCCEEEEEECCCccc-CCcchHHHHHHHHhh-c-CcEEEecCCCCH-HHHHHHHHCCCCEEEECchhhC-
Confidence 3455566678999999744455442 222346789999875 3 444443344444 3567788899999865544433
Q ss_pred CHHHHHHHHhhCCC-cc--cc-----------------hhhhhHHHHhcCCCeEEe
Q psy11600 101 VPQVIRQIKEAGMK-VG--QV-----------------LQDWIEPMADANVDQYTF 136 (277)
Q Consensus 101 g~~~i~~i~~~~~~-~~--d~-----------------p~~~i~~~~~~g~d~it~ 136 (277)
.|++++++.+.... .+ |+ |.+|++.+.+.|+..+.+
T Consensus 108 ~p~~l~~~~~~~~~ivvslD~k~g~v~~~gw~~~~~~~~~e~~~~~~~~g~~~ii~ 163 (241)
T PRK14114 108 DPSFLKFLKEIDVEPVFSLDTRGGKVAFKGWLAEEEIDPVSLLKRLKEYGLEEIVH 163 (241)
T ss_pred CHHHHHHHHHhCCCEEEEEEccCCEEeeCCCeecCCCCHHHHHHHHHhcCCCEEEE
Confidence 58889988654322 11 21 677888888888765554
No 482
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=73.50 E-value=66 Score=28.54 Aligned_cols=151 Identities=12% Similarity=0.096 Sum_probs=84.9
Q ss_pred ccCcHHhHHHHHhcCCCeEEEeccCC---CC---CHHHHHHHHhhCCCcccc-----hhhhhHHHHhcCCCeEEeecCCC
Q psy11600 73 VQNPQQWIEPMADANVDQYTFHVEPV---DN---VPQVIRQIKEAGMKVGQV-----LQDWIEPMADANVDQYTFHVEPV 141 (277)
Q Consensus 73 v~~p~~~i~~l~~ag~d~i~~H~e~~---d~---g~~~i~~i~~~~~~~~d~-----p~~~i~~~~~~g~d~it~H~E~~ 141 (277)
..+|.+.++.+.+. ++++++ +|.. .| ...+++.+++.+..|+.+ -.+-++.+.+.|++.+.+-.++.
T Consensus 29 ~~dp~~~a~~~~~~-~~~l~i-vDldga~~g~~~n~~~i~~i~~~~~~pv~~gGGIrs~edv~~l~~~G~~~vivGtaa~ 106 (228)
T PRK04128 29 YGDPVEIALRFSEY-VDKIHV-VDLDGAFEGKPKNLDVVKNIIRETGLKVQVGGGLRTYESIKDAYEIGVENVIIGTKAF 106 (228)
T ss_pred CCCHHHHHHHHHHh-CCEEEE-EECcchhcCCcchHHHHHHHHhhCCCCEEEcCCCCCHHHHHHHHHCCCCEEEECchhc
Confidence 45999999999998 998854 4421 23 456788888877777765 45667777888999999977632
Q ss_pred CChHHHHHHHHHhCCccceeeC--------------CCCCH-HhHHHHHhhcCceEEEEecCCCCCchhhhhhhhhHHHH
Q psy11600 142 DNVPQVIRQIKEAGMKVGLAIK--------------PKTPV-DVIAEYIESADLVLIMTVEPGFGGQKFMQDMMPKVKWL 206 (277)
Q Consensus 142 ~~~~~~~~~I~~~g~~~g~~i~--------------p~t~~-~~i~~~i~~~d~vl~mav~Pgt~gq~~~~~~l~kI~~l 206 (277)
++.-+.+..+..|- .-+++- .+.++ +.++.+-+.+.-++++.++-.-..+-+. .+
T Consensus 107 -~~~~l~~~~~~~g~-ivvslD~~~g~v~~~gw~~~~~~~~~~~~~~~~~~~~~ii~t~i~~dGt~~G~d--------~l 176 (228)
T PRK04128 107 -DLEFLEKVTSEFEG-ITVSLDVKGGRIAVKGWLEESSIKVEDAYEMLKNYVNRFIYTSIERDGTLTGIE--------EI 176 (228)
T ss_pred -CHHHHHHHHHHcCC-EEEEEEccCCeEecCCCeEcCCCCHHHHHHHHHHHhCEEEEEeccchhcccCHH--------HH
Confidence 22222233333331 111111 12222 2223332334567777777643333322 22
Q ss_pred HhhCCCccEEEeCCCCc-CcHHHHHHccCC
Q psy11600 207 RENYPTLNIEVDGGVGP-NTIDECAKCLTG 235 (277)
Q Consensus 207 ~~~~~~~~i~vdGgV~~-~tv~~~~~~gpg 235 (277)
.+..++..+..-|||.- +-+..+.+.|..
T Consensus 177 ~~~~~~~pviasGGv~~~~Dl~~l~~~g~~ 206 (228)
T PRK04128 177 ERFWGDEEFIYAGGVSSAEDVKKLAEIGFS 206 (228)
T ss_pred HHhcCCCCEEEECCCCCHHHHHHHHHCCCC
Confidence 22235677888899863 233344444433
No 483
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=73.40 E-value=11 Score=37.35 Aligned_cols=70 Identities=19% Similarity=0.327 Sum_probs=50.9
Q ss_pred CcccHHHHHHHHHHcCCCEEEEeccc--cccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcH---HhHHHHHhcCCCe
Q psy11600 16 DLSNLHSESQNLLDSGADYLHLDVMD--GTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQ---QWIEPMADANVDQ 90 (277)
Q Consensus 16 d~~~l~~~~~~l~~~~~~~~h~DimD--g~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~---~~i~~l~~ag~d~ 90 (277)
+...+.+..+++++.|+|. +=|-| |...|.-. -+.++++|+ .+++++.+|.=-..-. +.+. ..++|+++
T Consensus 161 t~~y~~~~a~~l~~~Gad~--I~IkDtaG~l~P~~v--~~Lv~alk~-~~~~pi~~H~Hnt~GlA~An~la-AieAGad~ 234 (468)
T PRK12581 161 TLNYYLSLVKELVEMGADS--ICIKDMAGILTPKAA--KELVSGIKA-MTNLPLIVHTHATSGISQMTYLA-AVEAGADR 234 (468)
T ss_pred cHHHHHHHHHHHHHcCCCE--EEECCCCCCcCHHHH--HHHHHHHHh-ccCCeEEEEeCCCCccHHHHHHH-HHHcCCCE
Confidence 3344778888899999999 66677 66666633 377889987 5889999998766533 3343 35789999
Q ss_pred E
Q psy11600 91 Y 91 (277)
Q Consensus 91 i 91 (277)
+
T Consensus 235 v 235 (468)
T PRK12581 235 I 235 (468)
T ss_pred E
Confidence 8
No 484
>TIGR00875 fsa_talC_mipB fructose-6-phosphate aldolase, TalC/MipB family. This model represents a family that includes the E. coli transaldolase homologs TalC and MipB, both shown to be fructose-6-phosphate aldolases rather than transaldolases as previously thought. It is related to but distinct from the transaldolase family of E. coli TalA and TalB. The member from Bacillus subtilis becomes phosphorylated during early stationary phase but not during exponential growth.
Probab=73.32 E-value=16 Score=32.32 Aligned_cols=90 Identities=14% Similarity=0.052 Sum_probs=53.9
Q ss_pred ccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEEeccCC----CCCHHHHHHHHhhC----CC-c
Q psy11600 45 VPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTFHVEPV----DNVPQVIRQIKEAG----MK-V 115 (277)
Q Consensus 45 vp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~H~e~~----d~g~~~i~~i~~~~----~~-~ 115 (277)
+|-..-|.+.++.|++. ++++.+-+.. .+. +.-...++|+++++.=+.=+ .-|-.+++++++.. .. .
T Consensus 84 IP~T~~Gl~A~~~L~~~--Gi~v~~T~vf-s~~-Qa~~Aa~aGa~yispyvgRi~d~g~dg~~~v~~~~~~~~~~~~~tk 159 (213)
T TIGR00875 84 IPMTSEGLKAVKILKKE--GIKTNVTLVF-SAA-QALLAAKAGATYVSPFVGRLDDIGGDGMKLIEEVKTIFENHAPDTE 159 (213)
T ss_pred eCCCHHHHHHHHHHHHC--CCceeEEEec-CHH-HHHHHHHcCCCEEEeecchHHHcCCCHHHHHHHHHHHHHHcCCCCE
Confidence 45444578888888764 5666555433 333 33346778999997654422 12677777776652 11 2
Q ss_pred ccc----hhhhhHHHHhcCCCeEEeec
Q psy11600 116 GQV----LQDWIEPMADANVDQYTFHV 138 (277)
Q Consensus 116 ~d~----p~~~i~~~~~~g~d~it~H~ 138 (277)
+.. -.+.+-+...+|+|.+|+.+
T Consensus 160 IlaAS~r~~~~v~~~~~~G~d~vTip~ 186 (213)
T TIGR00875 160 VIAASVRHPRHVLEAALIGADIATMPL 186 (213)
T ss_pred EEEeccCCHHHHHHHHHcCCCEEEcCH
Confidence 221 23344456788999999854
No 485
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=73.24 E-value=22 Score=32.90 Aligned_cols=78 Identities=17% Similarity=0.181 Sum_probs=66.1
Q ss_pred cccHHHHHHHHHHcCCCEEEEeccc--ccc--ccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEE
Q psy11600 17 LSNLHSESQNLLDSGADYLHLDVMD--GTF--VPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYT 92 (277)
Q Consensus 17 ~~~l~~~~~~l~~~~~~~~h~DimD--g~f--vp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~ 92 (277)
+.+.++..+.+++.|+|+|=+-|=- |.| -|+ +..+.++++++. .++|+..|==..-|.++++++.+.|+.-+-
T Consensus 155 yT~peeA~~Fv~~TgvD~LAvaiGt~HG~Y~~~p~--L~~~~L~~I~~~-~~iPLVLHGgSG~~~e~~~~ai~~Gi~KiN 231 (285)
T PRK07709 155 YADPAECKHLVEATGIDCLAPALGSVHGPYKGEPN--LGFAEMEQVRDF-TGVPLVLHGGTGIPTADIEKAISLGTSKIN 231 (285)
T ss_pred CCCHHHHHHHHHHhCCCEEEEeecccccCcCCCCc--cCHHHHHHHHHH-HCCCEEEeCCCCCCHHHHHHHHHcCCeEEE
Confidence 6788899999999999999888844 777 455 455889999987 699999999999999999999999999996
Q ss_pred EeccC
Q psy11600 93 FHVEP 97 (277)
Q Consensus 93 ~H~e~ 97 (277)
+.-|.
T Consensus 232 i~T~l 236 (285)
T PRK07709 232 VNTEN 236 (285)
T ss_pred eChHH
Confidence 66554
No 486
>cd08563 GDPD_TtGDE_like Glycerophosphodiester phosphodiesterase domain of Thermoanaerobacter tengcongensis and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Thermoanaerobacter tengcongensis glycerophosphodiester phosphodiesterase (TtGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Despite the fact that most of GDPD family members exist as the monomer, TtGDE can function as a dimeric unit. Its catalytic mechanism is based on the general base-acid catalysis, which is similar to that of phosphoinositide-specific phospholipases C (PI-PLCs, EC 3.1.4.11). A divalent metal cation is required for the enzyme activity of TtGDE.
Probab=73.20 E-value=21 Score=31.14 Aligned_cols=84 Identities=19% Similarity=0.208 Sum_probs=49.9
Q ss_pred CCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEEeccCCCCCHHHHHHHHhhCCCcc--cc-hhhhhHH
Q psy11600 49 TFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVG--QV-LQDWIEP 125 (277)
Q Consensus 49 ~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~H~e~~d~g~~~i~~i~~~~~~~~--d~-p~~~i~~ 125 (277)
+|.++.++.+|+..|++++-.-.. .......+.+...+++.++.++. ...+..++.+++.+.... -+ -...+..
T Consensus 140 Sf~~~~l~~~~~~~p~~~~~~l~~-~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~i~~~~~~g~~v~~Wtvn~~~~~~~ 216 (230)
T cd08563 140 SFNHESLKRLKKLDPKIKLALLYE-TGLQDPKDYAKKIGADSLHPDFK--LLTEEVVEELKKRGIPVRLWTVNEEEDMKR 216 (230)
T ss_pred cCCHHHHHHHHHHCCCCcEEEEec-CcccCHHHHHHHhCCEEEccCch--hcCHHHHHHHHHCCCEEEEEecCCHHHHHH
Confidence 688899999998878766544221 12222233444556666644433 335778888887765432 23 3445566
Q ss_pred HHhcCCCeEE
Q psy11600 126 MADANVDQYT 135 (277)
Q Consensus 126 ~~~~g~d~it 135 (277)
+.+.|+|.|+
T Consensus 217 ~~~~GVdgi~ 226 (230)
T cd08563 217 LKDLGVDGII 226 (230)
T ss_pred HHHCCCCEEe
Confidence 6677777664
No 487
>COG0320 LipA Lipoate synthase [Coenzyme metabolism]
Probab=73.06 E-value=35 Score=31.63 Aligned_cols=114 Identities=23% Similarity=0.343 Sum_probs=73.5
Q ss_pred cCcccHHHHHHHHHHcCCCEEEE------eccc---cccccCCCCCHHHHHHHHhcCCCCeeeeeeeccC---cHHhHHH
Q psy11600 15 SDLSNLHSESQNLLDSGADYLHL------DVMD---GTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQN---PQQWIEP 82 (277)
Q Consensus 15 ~d~~~l~~~~~~l~~~~~~~~h~------DimD---g~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~---p~~~i~~ 82 (277)
.|+..-++-.+.+.+.|.+|+=+ |.-| ++|+ +.|+++|+..|...+++ .+-| -...++.
T Consensus 97 lD~~EP~rvAeaV~~mgLkyVViTsVdRDDL~DGGA~hfa-------~~i~~Ire~~P~t~iEv--L~PDF~G~~~al~~ 167 (306)
T COG0320 97 LDPDEPERVAEAVKDMGLKYVVITSVDRDDLPDGGAQHFA-------ECIRAIRELNPQTTIEV--LTPDFRGNDDALEI 167 (306)
T ss_pred CCCchHHHHHHHHHHhCCCeEEEEeeccccccccchHHHH-------HHHHHHHhhCCCceEEE--eCccccCCHHHHHH
Confidence 35554445555566678888665 4555 4565 67899998877766654 4444 2335888
Q ss_pred HHhcCCCeEEEeccCCCC-------------CHHHHHHHHhhCCC-----cccc--------hhhhhHHHHhcCCCeEEe
Q psy11600 83 MADANVDQYTFHVEPVDN-------------VPQVIRQIKEAGMK-----VGQV--------LQDWIEPMADANVDQYTF 136 (277)
Q Consensus 83 l~~ag~d~i~~H~e~~d~-------------g~~~i~~i~~~~~~-----~~d~--------p~~~i~~~~~~g~d~it~ 136 (277)
+.+++.|.+.=-+|...- +..++++.|+.... -+-+ ..+..++|..+|+|++|+
T Consensus 168 v~~~~pdV~nHNvETVprL~~~VRp~A~Y~~SL~~L~~~k~~~P~i~TKSgiMlGLGEt~~Ev~e~m~DLr~~gvdilTi 247 (306)
T COG0320 168 VADAGPDVFNHNVETVPRLYPRVRPGATYERSLSLLERAKELGPDIPTKSGLMVGLGETDEEVIEVMDDLRSAGVDILTI 247 (306)
T ss_pred HHhcCcchhhcccccchhcccccCCCCcHHHHHHHHHHHHHhCCCcccccceeeecCCcHHHHHHHHHHHHHcCCCEEEe
Confidence 899999977522554321 77788888876422 1111 455668888889999988
Q ss_pred e
Q psy11600 137 H 137 (277)
Q Consensus 137 H 137 (277)
-
T Consensus 248 G 248 (306)
T COG0320 248 G 248 (306)
T ss_pred c
Confidence 3
No 488
>cd08579 GDPD_memb_like Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial glycerophosphodiester phosphodiesterases. In addition to a C-terminal GDPD domain, most members in this family have an N-terminus that functions as a membrane anchor.
Probab=72.48 E-value=19 Score=31.25 Aligned_cols=81 Identities=22% Similarity=0.219 Sum_probs=50.1
Q ss_pred CCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEEeccCCCCCHHHHHHHHhhCCCcc--cc-hhhhhH
Q psy11600 48 LTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVG--QV-LQDWIE 124 (277)
Q Consensus 48 ~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~H~e~~d~g~~~i~~i~~~~~~~~--d~-p~~~i~ 124 (277)
.+|.++.++.+|+..|++++-.-... ... .+.+.+++.+.+++... .+.+++.+++.+..+. .+ -...+.
T Consensus 133 ~Sf~~~~l~~~~~~~p~~~~~~~~~~-~~~----~~~~~~~~~~~~~~~~~--~~~~v~~~~~~G~~v~~wtvn~~~~~~ 205 (220)
T cd08579 133 HSLDYRVIEKVKKLDPKIKTGYILPF-NIG----NLPKTNVDFYSIEYSTL--NKEFIRQAHQNGKKVYVWTVNDPDDMQ 205 (220)
T ss_pred EeCCHHHHHHHHHHCCCCeEEEEEec-ccC----cccccCceEEeeehhhc--CHHHHHHHHHCCCEEEEEcCCCHHHHH
Confidence 45788999999987787655432221 111 13456788886665544 4678888888765422 22 233446
Q ss_pred HHHhcCCCeEE
Q psy11600 125 PMADANVDQYT 135 (277)
Q Consensus 125 ~~~~~g~d~it 135 (277)
.+.+.|+|.|+
T Consensus 206 ~~~~~Gvd~i~ 216 (220)
T cd08579 206 RYLAMGVDGII 216 (220)
T ss_pred HHHHcCCCEEe
Confidence 67777887764
No 489
>cd08209 RLP_DK-MTP-1-P-enolase 2,3-diketo-5-methylthiopentyl-1-phosphate enolase. Ribulose bisphosphate carboxylase like proteins (RLPs) similar to B. subtilis YkrW protein, have been identified as 2,3-diketo-5-methylthiopentyl-1-phosphate enolases. They catalyze the tautomerization of 2,3-diketo-5-methylthiopentane 1-phosphate (DK-MTP 1-P). This is an important step in the methionine salvage pathway in which 5-methylthio-D-ribose (MTR) derived from 5'-methylthioadenosine is converted to methionine.
Probab=72.42 E-value=43 Score=32.45 Aligned_cols=92 Identities=20% Similarity=0.260 Sum_probs=61.8
Q ss_pred EeeeccccCcccHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCC--CCeeeeee-----eccCcH---
Q psy11600 8 IGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIP--KAFFETHM-----MVQNPQ--- 77 (277)
Q Consensus 8 ~~~s~~~~d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~--~~~~d~Hl-----mv~~p~--- 77 (277)
-+|.|- ++...+.+..+.+.+.|++.+.+|++ +.|...++.|++. + ++++.+|= ++.+|.
T Consensus 195 ya~NiT-~~~~em~~ra~~~~~~G~~~~mv~~~--------~~G~~~l~~l~~~-~~~~lpIhaHra~~ga~~~~~~~Gi 264 (391)
T cd08209 195 YAVNLT-GPVFTLKEKARRLVEAGANALLFNVF--------AYGLDVLEALASD-PEINVPIFAHPAFAGALYGSPDYGI 264 (391)
T ss_pred EEEEcC-CCHHHHHHHHHHHHHhCCCEEEEecc--------ccchHHHHHHHhc-CcCCcEEEecCCcccccccCCCCCC
Confidence 344444 67788999999999999999888864 3677789999974 5 67788774 444444
Q ss_pred ----HhHHHHHhcCCCeEEEeccCCCC----CHHHHHHHHhh
Q psy11600 78 ----QWIEPMADANVDQYTFHVEPVDN----VPQVIRQIKEA 111 (277)
Q Consensus 78 ----~~i~~l~~ag~d~i~~H~e~~d~----g~~~i~~i~~~ 111 (277)
-+-+.+.-+|+|.+ |+-..-| ..+...++.+.
T Consensus 265 s~~~~l~kl~RLaGaD~~--~~~~~~Gk~~~~~~~~~~~~~~ 304 (391)
T cd08209 265 AASVLLGTLMRLAGADAV--LFPSPYGSVALSKEEALAIAEA 304 (391)
T ss_pred cHHHHHHHHHHHcCCCcc--ccCCccCCcCCCHHHHHHHHHH
Confidence 13444566899999 5544332 44445555444
No 490
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=72.41 E-value=24 Score=32.69 Aligned_cols=78 Identities=15% Similarity=0.263 Sum_probs=65.3
Q ss_pred cccHHHHHHHHHHcCCCEEEEeccc--cccc--cCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEE
Q psy11600 17 LSNLHSESQNLLDSGADYLHLDVMD--GTFV--PNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYT 92 (277)
Q Consensus 17 ~~~l~~~~~~l~~~~~~~~h~DimD--g~fv--p~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~ 92 (277)
+.+.++..+.+++.|+|+|=+=|=- |.|. |++.| +.+++|++. +++|+..|==..-|.+.++++.+.|+.-+-
T Consensus 154 ~T~peea~~Fv~~TgvD~LAvaiGt~HG~Y~~~p~Ldf--d~l~~I~~~-~~vPLVLHGgSG~~~e~~~kai~~GI~KiN 230 (286)
T PRK12738 154 LTDPQEAKRFVELTGVDSLAVAIGTAHGLYSKTPKIDF--QRLAEIREV-VDVPLVLHGASDVPDEFVRRTIELGVTKVN 230 (286)
T ss_pred CCCHHHHHHHHHHhCCCEEEeccCcccCCCCCCCcCCH--HHHHHHHHH-hCCCEEEeCCCCCCHHHHHHHHHcCCeEEE
Confidence 5678888888999999998888844 7773 56555 789999987 799999999999999999999999999996
Q ss_pred EeccC
Q psy11600 93 FHVEP 97 (277)
Q Consensus 93 ~H~e~ 97 (277)
+.-|.
T Consensus 231 i~T~l 235 (286)
T PRK12738 231 VATEL 235 (286)
T ss_pred eCcHH
Confidence 55443
No 491
>PRK02227 hypothetical protein; Provisional
Probab=72.39 E-value=75 Score=28.71 Aligned_cols=177 Identities=18% Similarity=0.100 Sum_probs=97.6
Q ss_pred cCcHHhHHHHHhcCCCeEEEec-cCCCC-----CHHHHHHHHhhCC--Cccc-----ch------hhhhHHHHhcCCCeE
Q psy11600 74 QNPQQWIEPMADANVDQYTFHV-EPVDN-----VPQVIRQIKEAGM--KVGQ-----VL------QDWIEPMADANVDQY 134 (277)
Q Consensus 74 ~~p~~~i~~l~~ag~d~i~~H~-e~~d~-----g~~~i~~i~~~~~--~~~d-----~p------~~~i~~~~~~g~d~i 134 (277)
.|+++ .....++|+|+| .+ |+..| .|++|++|+.... .|++ .| ..-+...+.+|+|||
T Consensus 8 r~~eE-A~~Al~~GaDiI--DvK~P~~GaLGA~~p~vir~Iv~~~~~~~pvSAtiGD~p~~p~~~~~aa~~~a~~GvDyV 84 (238)
T PRK02227 8 RNLEE-ALEALAGGADII--DVKNPKEGSLGANFPWVIREIVAAVPGRKPVSATIGDVPYKPGTISLAALGAAATGADYV 84 (238)
T ss_pred CCHHH-HHHHHhcCCCEE--EccCCCCCCCCCCCHHHHHHHHHHhCCCCCceeeccCCCCCchHHHHHHHHHHhhCCCEE
Confidence 35554 445677899998 43 23333 8999999998753 4553 33 223566678899999
Q ss_pred EeecCCCCChHHHHHHHH-------Hh--CCcc-ceeeCC-----CCCHHhHHHHHhhcCceEEEEecCCCCCchhh---
Q psy11600 135 TFHVEPVDNVPQVIRQIK-------EA--GMKV-GLAIKP-----KTPVDVIAEYIESADLVLIMTVEPGFGGQKFM--- 196 (277)
Q Consensus 135 t~H~E~~~~~~~~~~~I~-------~~--g~~~-g~~i~p-----~t~~~~i~~~i~~~d~vl~mav~Pgt~gq~~~--- 196 (277)
=+-+-+..+..+....++ .. +.+. .++..= ..+...+.++..+.+.-..|-=.-+..|....
T Consensus 85 KvGl~~~~~~~~~~~~~~~v~~a~~~~~~~~~vVav~yaD~~r~~~~~~~~l~~~a~~aGf~g~MlDTa~Kdg~~Lfd~l 164 (238)
T PRK02227 85 KVGLYGGKTAEEAVEVMKAVVRAVKDLDPGKIVVAAGYADAHRVGSVSPLSLPAIAADAGFDGAMLDTAIKDGKSLFDHM 164 (238)
T ss_pred EEcCCCCCcHHHHHHHHHHHHHhhhhcCCCCeEEEEEecccccccCCChHHHHHHHHHcCCCEEEEecccCCCcchHhhC
Confidence 877642223333333332 11 1111 111111 11444667777777776666422222232221
Q ss_pred --hhhhhhHHHHHhhCCCccEEEeCCCCcCcHHHHHHccCCC---------CCcccccCHHHHHHHHHhh
Q psy11600 197 --QDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKCLTGF---------GGQKFMQDMMPKVKWLREN 255 (277)
Q Consensus 197 --~~~l~kI~~l~~~~~~~~i~vdGgV~~~tv~~~~~~gpg~---------ggq~F~~~~~~kI~~l~~~ 255 (277)
+++-..+++.+. .++...+.|++...-++.+...+|+| |+..-..--.++|+++++.
T Consensus 165 ~~~~L~~Fv~~ar~--~Gl~~gLAGSL~~~dip~L~~l~pD~lGfRgavC~g~dR~~~id~~~V~~~~~~ 232 (238)
T PRK02227 165 DEEELAEFVAEARS--HGLMSALAGSLKFEDIPALKRLGPDILGVRGAVCGGGDRTGRIDPELVAELREA 232 (238)
T ss_pred CHHHHHHHHHHHHH--cccHhHhcccCchhhHHHHHhcCCCEEEechhccCCCCcccccCHHHHHHHHHH
Confidence 122222333332 35667789999999999999999997 3322222234566666654
No 492
>PRK08207 coproporphyrinogen III oxidase; Provisional
Probab=72.31 E-value=19 Score=35.90 Aligned_cols=95 Identities=13% Similarity=0.259 Sum_probs=49.3
Q ss_pred HHHHHHHhcCCCCee--eeeeeccCcH----HhHHHHHhcCCCeEEEeccCCCCCHHHHHHHHhhCCCcccc--hhhhhH
Q psy11600 53 PVVKCLRNKIPKAFF--ETHMMVQNPQ----QWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQV--LQDWIE 124 (277)
Q Consensus 53 ~~v~~l~~~~~~~~~--d~Hlmv~~p~----~~i~~l~~ag~d~i~~H~e~~d~g~~~i~~i~~~~~~~~d~--p~~~i~ 124 (277)
++++.+++.+|++.- .+-+-..+|. +.++.+.++|++++++=+++++ +++++.+.+ .+.. ..+-++
T Consensus 239 ~Ll~~i~~~f~~~~~~~EiTvE~grPd~it~e~L~~Lk~~Gv~RISIGvQS~~--d~vLk~igR----~ht~e~v~~ai~ 312 (488)
T PRK08207 239 RLLEEIYENFPDVKNVKEFTVEAGRPDTITEEKLEVLKKYGVDRISINPQTMN--DETLKAIGR----HHTVEDIIEKFH 312 (488)
T ss_pred HHHHHHHHhccccCCceEEEEEcCCCCCCCHHHHHHHHhcCCCeEEEcCCcCC--HHHHHHhCC----CCCHHHHHHHHH
Confidence 445556555543221 2222223443 4689999999999965555544 666666633 2222 344555
Q ss_pred HHHhcCCCeEEeec--C-CCCChHHHHHHHHH
Q psy11600 125 PMADANVDQYTFHV--E-PVDNVPQVIRQIKE 153 (277)
Q Consensus 125 ~~~~~g~d~it~H~--E-~~~~~~~~~~~I~~ 153 (277)
.+.++|-+.|++.. . |.++..++.+.++.
T Consensus 313 ~ar~~Gf~~In~DLI~GLPgEt~ed~~~tl~~ 344 (488)
T PRK08207 313 LAREMGFDNINMDLIIGLPGEGLEEVKHTLEE 344 (488)
T ss_pred HHHhCCCCeEEEEEEeCCCCCCHHHHHHHHHH
Confidence 66666765333321 0 22255555444443
No 493
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=72.28 E-value=12 Score=36.98 Aligned_cols=145 Identities=13% Similarity=0.213 Sum_probs=81.4
Q ss_pred hhhhhHHHHhcCCCeEEeecCCCC-----ChHHHHHHHHHhC--------CccceeeCCC-CCHHhHHHHHh-hcCceEE
Q psy11600 119 LQDWIEPMADANVDQYTFHVEPVD-----NVPQVIRQIKEAG--------MKVGLAIKPK-TPVDVIAEYIE-SADLVLI 183 (277)
Q Consensus 119 p~~~i~~~~~~g~d~it~H~E~~~-----~~~~~~~~I~~~g--------~~~g~~i~p~-t~~~~i~~~i~-~~d~vl~ 183 (277)
..+-++.|.+.+.+.+-+--|-.. +..++++.+..-. .+.+.++.+. .+++....++. .+|++
T Consensus 167 l~eal~~m~~~~~~~lpVVDe~g~lvGiIT~~DLl~~~~~p~a~~d~~g~l~V~aai~~~~~~~e~a~~L~~agvdvi-- 244 (486)
T PRK05567 167 LEEALELLHEHRIEKLPVVDDNGRLKGLITVKDIEKAEEFPNACKDEQGRLRVGAAVGVGADNEERAEALVEAGVDVL-- 244 (486)
T ss_pred HHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHhhhhhhCCCcccccCCCEEEEeecccCcchHHHHHHHHHhCCCEE--
Confidence 355667777777776655332000 1234443332111 1123344322 33555555554 35533
Q ss_pred EEecCCCCCchhhhhhhhhHHHHHhhCCCccEEEeCCCCcCcHHHHHHccCCC---C--Cc------cc---ccCHHHHH
Q psy11600 184 MTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKCLTGF---G--GQ------KF---MQDMMPKV 249 (277)
Q Consensus 184 mav~Pgt~gq~~~~~~l~kI~~l~~~~~~~~i~vdGgV~~~tv~~~~~~gpg~---g--gq------~F---~~~~~~kI 249 (277)
+++-. .|. ...+++.++++++..+++.+.+-+.++.+++..+.++|+++ | +. .+ ....+.-+
T Consensus 245 -vvD~a-~g~--~~~vl~~i~~i~~~~p~~~vi~g~v~t~e~a~~l~~aGad~i~vg~g~gs~~~~r~~~~~g~p~~~~~ 320 (486)
T PRK05567 245 -VVDTA-HGH--SEGVLDRVREIKAKYPDVQIIAGNVATAEAARALIEAGADAVKVGIGPGSICTTRIVAGVGVPQITAI 320 (486)
T ss_pred -EEECC-CCc--chhHHHHHHHHHhhCCCCCEEEeccCCHHHHHHHHHcCCCEEEECCCCCccccceeecCCCcCHHHHH
Confidence 33321 121 25677889999988888888888888889999999999986 2 11 11 11234444
Q ss_pred HHHHhh--CCCCeEEEeCCCCc
Q psy11600 250 KWLREN--YPTLNIEVDGGVGP 269 (277)
Q Consensus 250 ~~l~~~--~~~~~I~VDGGI~~ 269 (277)
.++++. .....+..||||+.
T Consensus 321 ~~~~~~~~~~~~~viadGGi~~ 342 (486)
T PRK05567 321 ADAAEAAKKYGIPVIADGGIRY 342 (486)
T ss_pred HHHHHHhccCCCeEEEcCCCCC
Confidence 444432 23578999999985
No 494
>PRK15452 putative protease; Provisional
Probab=72.23 E-value=58 Score=32.07 Aligned_cols=133 Identities=13% Similarity=0.175 Sum_probs=72.5
Q ss_pred hhHHHHhcCCCeEEeecCCC-----------CChHHHHHHHHHhCCccceeeCCCCC---HHhHHHHHh---hcCceEEE
Q psy11600 122 WIEPMADANVDQYTFHVEPV-----------DNVPQVIRQIKEAGMKVGLAIKPKTP---VDVIAEYIE---SADLVLIM 184 (277)
Q Consensus 122 ~i~~~~~~g~d~it~H~E~~-----------~~~~~~~~~I~~~g~~~g~~i~p~t~---~~~i~~~i~---~~d~vl~m 184 (277)
-++..+++|||.|.+-.+.- +.+.+.++..++.|.+.-++++.=.. ++.+.++++ ..++=-++
T Consensus 15 ~l~aAi~~GADaVY~G~~~~~~R~~~~~f~~edl~eav~~ah~~g~kvyvt~n~i~~e~el~~~~~~l~~l~~~gvDgvI 94 (443)
T PRK15452 15 NMRYAFAYGADAVYAGQPRYSLRVRNNEFNHENLALGINEAHALGKKFYVVVNIAPHNAKLKTFIRDLEPVIAMKPDALI 94 (443)
T ss_pred HHHHHHHCCCCEEEECCCccchhhhccCCCHHHHHHHHHHHHHcCCEEEEEecCcCCHHHHHHHHHHHHHHHhCCCCEEE
Confidence 44566788999999944200 02334555566677666666553332 223333343 22222234
Q ss_pred EecCCCCCchhhhhhhhhHHHHHhhCCCccEEEeCCCCcCcHHH---HHHccCCCCCcccc-cCHHHHHHHHHhhCC--C
Q psy11600 185 TVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDE---CAKCLTGFGGQKFM-QDMMPKVKWLRENYP--T 258 (277)
Q Consensus 185 av~Pgt~gq~~~~~~l~kI~~l~~~~~~~~i~vdGgV~~~tv~~---~~~~gpg~ggq~F~-~~~~~kI~~l~~~~~--~ 258 (277)
.-+||. +..+++..|++.+.+|-..|.-|... +.+.|+. .-..- +-.++.|+.+++..+ .
T Consensus 95 V~d~G~------------l~~~ke~~p~l~ih~stqlni~N~~a~~f~~~lG~~--rvvLSrELsl~EI~~i~~~~~~~e 160 (443)
T PRK15452 95 MSDPGL------------IMMVREHFPEMPIHLSVQANAVNWATVKFWQQMGLT--RVILSRELSLEEIEEIRQQCPDME 160 (443)
T ss_pred EcCHHH------------HHHHHHhCCCCeEEEEecccCCCHHHHHHHHHCCCc--EEEECCcCCHHHHHHHHhhCCCCC
Confidence 445542 56667777888888888777766644 3333321 21222 346788888876543 3
Q ss_pred CeEEEeCCCC
Q psy11600 259 LNIEVDGGVG 268 (277)
Q Consensus 259 ~~I~VDGGI~ 268 (277)
+++-|=|.+-
T Consensus 161 lEvfVHGalc 170 (443)
T PRK15452 161 LEVFVHGALC 170 (443)
T ss_pred EEEEEEccch
Confidence 4555555443
No 495
>TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes.
Probab=72.23 E-value=18 Score=35.96 Aligned_cols=73 Identities=19% Similarity=0.306 Sum_probs=50.3
Q ss_pred ccCcccHHHHHHHHHHcCCCEEEEeccc--cccccCCCCCHHHHHHHHhcCC---CCeeeeeeeccCcHH---hHHHHHh
Q psy11600 14 NSDLSNLHSESQNLLDSGADYLHLDVMD--GTFVPNLTFGHPVVKCLRNKIP---KAFFETHMMVQNPQQ---WIEPMAD 85 (277)
Q Consensus 14 ~~d~~~l~~~~~~l~~~~~~~~h~DimD--g~fvp~~~~g~~~v~~l~~~~~---~~~~d~Hlmv~~p~~---~i~~l~~ 85 (277)
..|+..+.+-++.+.+.|++. +-+-| |...|+-. .+.++.+++.+| ++++.+|.=-..-.. .+.. .+
T Consensus 142 r~d~~~l~~~~~~~~~~Ga~~--i~l~DTvG~~~P~~~--~~~i~~l~~~~~~~~~v~l~~H~HND~GlAvANalaA-v~ 216 (494)
T TIGR00973 142 RTEIPFLARIVEAAINAGATT--INIPDTVGYALPAEY--GNLIKGLRENVPNIDKAILSVHCHNDLGLAVANSLAA-VQ 216 (494)
T ss_pred CCCHHHHHHHHHHHHHcCCCE--EEeCCCCCCCCHHHH--HHHHHHHHHhhccccCceEEEEeCCCCChHHHHHHHH-HH
Confidence 356667778888889999998 77777 66666533 267888888776 467888876544322 2333 45
Q ss_pred cCCCeE
Q psy11600 86 ANVDQY 91 (277)
Q Consensus 86 ag~d~i 91 (277)
+|++++
T Consensus 217 aGa~~v 222 (494)
T TIGR00973 217 NGARQV 222 (494)
T ss_pred hCCCEE
Confidence 899987
No 496
>cd08205 RuBisCO_IV_RLP Ribulose bisphosphate carboxylase like proteins, Rubisco-Form IV. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions, like for example 2,3-diketo-5-methylthiopentyl-1-phosphate enolase or 5-methyl
Probab=72.23 E-value=51 Score=31.55 Aligned_cols=92 Identities=17% Similarity=0.162 Sum_probs=61.6
Q ss_pred EeeeccccCcccHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeec-----cC------c
Q psy11600 8 IGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMV-----QN------P 76 (277)
Q Consensus 8 ~~~s~~~~d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv-----~~------p 76 (277)
+.+.+- ++...+.+..+.+++.|+|.+-++.. .+|...++.+++. +++++..|--. .+ .
T Consensus 201 y~~nit-~~~~e~i~~a~~a~~~Gad~vmv~~~--------~~g~~~~~~l~~~-~~lpi~~H~a~~ga~~~~~~~g~~~ 270 (367)
T cd08205 201 YAPNIT-GDPDELRRRADRAVEAGANALLINPN--------LVGLDALRALAED-PDLPIMAHPAFAGALSRSPDYGSHF 270 (367)
T ss_pred EEEEcC-CCHHHHHHHHHHHHHcCCCEEEEecc--------cccccHHHHHHhc-CCCeEEEccCcccccccCCCCcCCH
Confidence 444444 44466777778888999999777654 4666778888875 79999999876 22 2
Q ss_pred HHhHHHHHhcCCCeEEEeccCCC----CCHHHHHHHHhh
Q psy11600 77 QQWIEPMADANVDQYTFHVEPVD----NVPQVIRQIKEA 111 (277)
Q Consensus 77 ~~~i~~l~~ag~d~i~~H~e~~d----~g~~~i~~i~~~ 111 (277)
.-+-+...-+|+|.+ |+...- +.++.+.++.+.
T Consensus 271 ~~~~kl~RlaGad~~--~~~~~~gk~~~~~~~~~~la~~ 307 (367)
T cd08205 271 LLLGKLMRLAGADAV--IFPGPGGRFPFSREECLAIARA 307 (367)
T ss_pred HHHHHHHHHcCCCcc--ccCCCccCcCCCHHHHHHHHHH
Confidence 223334455899999 766543 256666666553
No 497
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=72.23 E-value=4.5 Score=36.97 Aligned_cols=71 Identities=23% Similarity=0.305 Sum_probs=43.4
Q ss_pred hhHHHHHhhCC-CccEEEeCCCCcCcHHHH---HHccCCC-CCcccccCHHHHHHHHHhhCCCCeEEEeCCCCccCHHHh
Q psy11600 201 PKVKWLRENYP-TLNIEVDGGVGPNTIDEC---AKCLTGF-GGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDEC 275 (277)
Q Consensus 201 ~kI~~l~~~~~-~~~i~vdGgV~~~tv~~~---~~~gpg~-ggq~F~~~~~~kI~~l~~~~~~~~I~VDGGI~~~~~~~~ 275 (277)
..++.+++..+ ...|.+ ...|.+++ .++|+++ +-..|.++.++++.+.. .....+++=||||.+|++.+
T Consensus 166 ~av~~~r~~~~~~~~Igv----ev~t~eea~~A~~~gaDyI~ld~~~~e~lk~~v~~~--~~~ipi~AsGGI~~~ni~~~ 239 (265)
T TIGR00078 166 KAVKRARAAAPFALKIEV----EVESLEEAEEAAEAGADIIMLDNMKPEEIKEAVQLL--KGRVLLEASGGITLDNLEEY 239 (265)
T ss_pred HHHHHHHHhCCCCCeEEE----EeCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh--cCCCcEEEECCCCHHHHHHH
Confidence 34667777654 444433 45566665 5577776 33455555454444322 12366999999999999887
Q ss_pred hC
Q psy11600 276 AK 277 (277)
Q Consensus 276 ~~ 277 (277)
++
T Consensus 240 a~ 241 (265)
T TIGR00078 240 AE 241 (265)
T ss_pred HH
Confidence 63
No 498
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=72.17 E-value=36 Score=29.22 Aligned_cols=112 Identities=14% Similarity=0.157 Sum_probs=69.6
Q ss_pred HHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHH-hHHHHHhcCCCeEEEeccCCCC
Q psy11600 22 SESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQ-WIEPMADANVDQYTFHVEPVDN 100 (277)
Q Consensus 22 ~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~-~i~~l~~ag~d~i~~H~e~~d~ 100 (277)
++++.+.+.|+|++.+=.-+. .|. .+.++..++|++..+...-.|-+.+.+..+ ..+...+.|+|++++|-+-
T Consensus 10 ed~~~a~~~Gvd~ig~i~~~~--s~R-~v~~~~a~~l~~~~~~~~~~V~v~vn~~~~~i~~ia~~~~~d~Vqlhg~e--- 83 (203)
T cd00405 10 EDALAAAEAGADAIGFIFAPK--SPR-YVSPEQAREIVAALPPFVKRVGVFVNEDLEEILEIAEELGLDVVQLHGDE--- 83 (203)
T ss_pred HHHHHHHHcCCCEEEEecCCC--CCC-CCCHHHHHHHHHhCCCCCcEEEEEeCCCHHHHHHHHHhcCCCEEEECCCC---
Confidence 567778889999988854331 122 245788899998766534456677765544 4555567899999888652
Q ss_pred CHHHHHHHHhhCC-Cc---ccc--hhh-hhHHHHhcCCCeEEeecC
Q psy11600 101 VPQVIRQIKEAGM-KV---GQV--LQD-WIEPMADANVDQYTFHVE 139 (277)
Q Consensus 101 g~~~i~~i~~~~~-~~---~d~--p~~-~i~~~~~~g~d~it~H~E 139 (277)
.+..++++|+... .. +.+ ... ....-...++|++.|...
T Consensus 84 ~~~~~~~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~aD~il~dt~ 129 (203)
T cd00405 84 SPEYCAQLRARLGLPVIKAIRVKDEEDLEKAAAYAGEVDAILLDSK 129 (203)
T ss_pred CHHHHHHHHhhcCCcEEEEEecCChhhHHHhhhccccCCEEEEcCC
Confidence 3567888887532 11 222 111 111223468999988653
No 499
>PLN02321 2-isopropylmalate synthase
Probab=71.93 E-value=15 Score=37.86 Aligned_cols=74 Identities=20% Similarity=0.212 Sum_probs=52.0
Q ss_pred ccCcccHHHHHHHHHHcCCCEEEEeccc--cccccCCCCCHHHHHHHHhcCC---CCeeeeeeeccCcHHhHHH--HHhc
Q psy11600 14 NSDLSNLHSESQNLLDSGADYLHLDVMD--GTFVPNLTFGHPVVKCLRNKIP---KAFFETHMMVQNPQQWIEP--MADA 86 (277)
Q Consensus 14 ~~d~~~l~~~~~~l~~~~~~~~h~DimD--g~fvp~~~~g~~~v~~l~~~~~---~~~~d~Hlmv~~p~~~i~~--l~~a 86 (277)
..|+..+.+.++.+.+.|++. +-+-| |...|+-. .+.++.+++.++ ++++.+|.--..-...... ..++
T Consensus 236 rtd~d~l~~~~~~a~~aGa~~--I~L~DTvG~~~P~~v--~~li~~l~~~~~~~~~v~i~vH~HND~GlAvANslaAv~A 311 (632)
T PLN02321 236 RSDPEFLYRILGEVIKAGATT--LNIPDTVGYTLPSEF--GQLIADIKANTPGIENVIISTHCQNDLGLSTANTLAGAHA 311 (632)
T ss_pred CCCHHHHHHHHHHHHHcCCCE--EEecccccCCCHHHH--HHHHHHHHHhcCCCCCceEEEEeCCCCCHHHHHHHHHHHh
Confidence 467778888999999999999 78888 55566522 367888888776 3568888865433332222 3468
Q ss_pred CCCeE
Q psy11600 87 NVDQY 91 (277)
Q Consensus 87 g~d~i 91 (277)
|++++
T Consensus 312 GA~~V 316 (632)
T PLN02321 312 GARQV 316 (632)
T ss_pred CCCEE
Confidence 99988
No 500
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=71.52 E-value=11 Score=35.82 Aligned_cols=73 Identities=15% Similarity=0.201 Sum_probs=52.1
Q ss_pred cCcccHHHHHHHHHHcCCCEEEEeccc--cccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHH--HhcCCCe
Q psy11600 15 SDLSNLHSESQNLLDSGADYLHLDVMD--GTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPM--ADANVDQ 90 (277)
Q Consensus 15 ~d~~~l~~~~~~l~~~~~~~~h~DimD--g~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l--~~ag~d~ 90 (277)
.|+..+.+-.+.+.+.|+|. +=+-| |...|.-. .+.++.+|+.+|..++.+|.=-..-......+ .++|+++
T Consensus 194 ~~~~~l~~~~~~~~~~Gad~--I~l~DT~G~a~P~~v--~~lv~~l~~~~~~~~i~~H~Hnd~GlA~AN~lAA~~aGa~~ 269 (347)
T PLN02746 194 VPPSKVAYVAKELYDMGCYE--ISLGDTIGVGTPGTV--VPMLEAVMAVVPVDKLAVHFHDTYGQALANILVSLQMGIST 269 (347)
T ss_pred CCHHHHHHHHHHHHHcCCCE--EEecCCcCCcCHHHH--HHHHHHHHHhCCCCeEEEEECCCCChHHHHHHHHHHhCCCE
Confidence 46677888899999999999 66778 55555422 26778888877767888888765543333333 5679998
Q ss_pred E
Q psy11600 91 Y 91 (277)
Q Consensus 91 i 91 (277)
+
T Consensus 270 v 270 (347)
T PLN02746 270 V 270 (347)
T ss_pred E
Confidence 8
Done!