RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11600
(277 letters)
>3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE;
1.70A {Homo sapiens} PDB: 3ovq_A* 3ovr_A* 3qc3_A
Length = 228
Score = 285 bits (732), Expect = 8e-98
Identities = 117/232 (50%), Positives = 148/232 (63%), Gaps = 45/232 (19%)
Query: 1 MSHVQCMIGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRN 60
M+ C IGPSILNSDL+NL +E +LDSGADYLHLDVMDG FVPN+TFGHPVV+ LR
Sbjct: 1 MAS-GCKIGPSILNSDLANLGAECLRMLDSGADYLHLDVMDGHFVPNITFGHPVVESLRK 59
Query: 61 KI-PKAFFETHMMVQNPQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVL 119
++ FF+ HMMV P+QW++PMA A +QYTFH+E +N +I+ I+E GMKVG
Sbjct: 60 QLGQDPFFDMHMMVSKPEQWVKPMAVAGANQYTFHLEATENPGALIKDIRENGMKVG--- 116
Query: 120 QDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESAD 179
LAIKP T V+ +A + D
Sbjct: 117 ----------------------------------------LAIKPGTSVEYLAPWANQID 136
Query: 180 LVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAK 231
+ L+MTVEPGFGGQKFM+DMMPKV WLR +P+L+IEVDGGVGP+T+ +CA+
Sbjct: 137 MALVMTVEPGFGGQKFMEDMMPKVHWLRTQFPSLDIEVDGGVGPDTVHKCAE 188
>1tqx_A D-ribulose-5-phosphate 3-epimerase, putative; structural genomics,
protein structure initiative, PSI; 2.00A {Plasmodium
falciparum} SCOP: c.1.2.2
Length = 227
Score = 284 bits (730), Expect = 1e-97
Identities = 80/233 (34%), Positives = 126/233 (54%), Gaps = 43/233 (18%)
Query: 1 MSHVQCMIGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRN 60
M ++ +I PS+L S++S L E+Q + GA+++HLDVMD FVPNL+FG PV+ L+
Sbjct: 1 MGTLKAIIAPSVLASNISKLAEETQRMESLGAEWIHLDVMDMHFVPNLSFGPPVINNLKK 60
Query: 61 KIPKAFFETHMMVQNPQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQ 120
FF+ H+MV+ P++++ + + +Q TFH E ++
Sbjct: 61 YTKSIFFDVHLMVEYPEKYVPLLKTS--NQLTFHFEALN--------------------- 97
Query: 121 DWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESA-- 178
E + Q+ ++I++ + G++IKPKT V + +++
Sbjct: 98 ------------------EDTERCIQLAKEIRDNNLWCGISIKPKTDVQKLVPILDTNLI 139
Query: 179 DLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAK 231
+ VL+MTVEPGFGGQ FM DMM KV +LR+ Y LNI+VDGG+ T + A
Sbjct: 140 NTVLVMTVEPGFGGQSFMHDMMGKVSFLRKKYKNLNIQVDGGLNIETTEISAS 192
>1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate
pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2
PDB: 1h1z_A
Length = 228
Score = 275 bits (705), Expect = 8e-94
Identities = 95/229 (41%), Positives = 136/229 (59%), Gaps = 46/229 (20%)
Query: 6 CMIGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKA 65
I PS+L+SD +NL +E+ ++ GAD+LH+D+MDG FVPNLT G PV++ LR K KA
Sbjct: 7 AKIAPSMLSSDFANLAAEADRMVRLGADWLHMDIMDGHFVPNLTIGAPVIQSLR-KHTKA 65
Query: 66 FFETHMMVQNPQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEP 125
+ + H+MV NP ++EP+A A +TFH+E
Sbjct: 66 YLDCHLMVTNPSDYVEPLAKAGASGFTFHIEVSR-------------------------- 99
Query: 126 MADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESA---DLVL 182
DN ++I+ IK GM+ G++++P TPV+ + +E+ +LVL
Sbjct: 100 ----------------DNWQELIQSIKAKGMRPGVSLRPGTPVEEVFPLVEAENPVELVL 143
Query: 183 IMTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAK 231
+MTVEPGFGGQKFM +MM KV+ LR+ YP+L+IEVDGG+GP+TID A
Sbjct: 144 VMTVEPGFGGQKFMPEMMEKVRALRKKYPSLDIEVDGGLGPSTIDVAAS 192
>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc
genomics, center for structural genomics of infectious
DISE csgid; 2.05A {Francisella tularensis subsp}
Length = 246
Score = 215 bits (551), Expect = 3e-70
Identities = 80/237 (33%), Positives = 115/237 (48%), Gaps = 51/237 (21%)
Query: 1 MSHVQCMIGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRN 60
M H+Q I PSIL++DL+ L + + +L +GAD +H DVMD +VPNLTFG V+K LR+
Sbjct: 25 MKHIQ--INPSILSADLARLGDDVKAVLAAGADNIHFDVMDNHYVPNLTFGPMVLKALRD 82
Query: 61 KIPKAFFETHMMVQNPQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQ 120
A + H+MV+ IE A A
Sbjct: 83 YGITAGMDVHLMVKPVDALIESFAKAGAT------------------------------- 111
Query: 121 DWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADL 180
I FH E +++ + ++ IK G++ GLA+ P T +D + + D
Sbjct: 112 -SI-----------VFHPEASEHIDRSLQLIKSFGIQAGLALNPATGIDCLKYVESNIDR 159
Query: 181 VLIMTVEPGFGGQKFMQDMMPKVKWLRE-----NYPTLNIEVDGGVGPNTIDECAKC 232
VLIM+V PGFGGQKF+ M+ K K + + + L +E+DGGV P I E A C
Sbjct: 160 VLIMSVNPGFGGQKFIPAMLDKAKEISKWISSTDRDIL-LEIDGGVNPYNIAEIAVC 215
>2fli_A Ribulose-phosphate 3-epimerase; (beta/alpha)8-barrel, D- xylitol
5-phosphate, isomerase; HET: DX5; 1.80A {Streptococcus
pyogenes} SCOP: c.1.2.2
Length = 220
Score = 214 bits (548), Expect = 5e-70
Identities = 79/236 (33%), Positives = 117/236 (49%), Gaps = 50/236 (21%)
Query: 1 MSHVQCMIGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRN 60
MS ++ I PSIL +D +N SE + ++ A+Y+H+D+MDG FVPN++FG VV +R
Sbjct: 1 MSTLK--IAPSILAADYANFASELARIEETDAEYVHIDIMDGQFVPNISFGADVVASMR- 57
Query: 61 KIPKAFFETHMMVQNPQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQ 120
K K F+ H+MV +P++++E A A D T H E
Sbjct: 58 KHSKLVFDCHLMVVDPERYVEAFAQAGADIMTIHTE------------------------ 93
Query: 121 DWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADL 180
+ ++ +++IK AGMK G+ I P TP + ++ D
Sbjct: 94 ------STRHIH-------------GALQKIKAAGMKAGVVINPGTPATALEPLLDLVDQ 134
Query: 181 VLIMTVEPGFGGQKFMQDMMPKVKWLR----ENYPTLNIEVDGGVGPNTIDECAKC 232
VLIMTV PGFGGQ F+ + + KV + E + +IEVDGGV TI C +
Sbjct: 135 VLIMTVNPGFGGQAFIPECLEKVATVAKWRDEKGLSFDIEVDGGVDNKTIRACYEA 190
>1rpx_A Protein (ribulose-phosphate 3-epimerase); chloroplast, calvin
cycle, oxidative pentose PH pathway; 2.30A {Solanum
tuberosum} SCOP: c.1.2.2
Length = 230
Score = 212 bits (543), Expect = 3e-69
Identities = 71/236 (30%), Positives = 105/236 (44%), Gaps = 46/236 (19%)
Query: 1 MSHVQCMIGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRN 60
S ++ PSIL+++ S L + + + +G D++H+DVMDG FVPN+T G VV LR
Sbjct: 6 FSKSDIIVSPSILSANFSKLGEQVKAIEQAGCDWIHVDVMDGRFVPNITIGPLVVDSLRP 65
Query: 61 KIPKAFFETHMMVQNPQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQ 120
+ H+M+ P Q + A D + H E
Sbjct: 66 IT-DLPLDVHLMIVEPDQRVPDFIKAGADIVSVHCE------------------------ 100
Query: 121 DWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADL 180
++ + I QIK G K G+ + P TP+ I +++ DL
Sbjct: 101 -----------------QSSTIHLHRTINQIKSLGAKAGVVLNPGTPLTAIEYVLDAVDL 143
Query: 181 VLIMTVEPGFGGQKFMQDMMPKVKWLR----ENYPTLNIEVDGGVGPNTIDECAKC 232
VLIM+V PGFGGQ F++ + K+ LR E IEVDGGVGP + +
Sbjct: 144 VLIMSVNPGFGGQSFIESQVKKISDLRKICAERGLNPWIEVDGGVGPKNAYKVIEA 199
>1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase,
isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2
Length = 230
Score = 210 bits (538), Expect = 2e-68
Identities = 73/229 (31%), Positives = 114/229 (49%), Gaps = 46/229 (20%)
Query: 8 IGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFF 67
+ PSIL++D S L E + + ++GAD++H+DVMDG FVPN+T G +V +R K
Sbjct: 7 VAPSILSADFSRLGEEIKAVDEAGADWIHVDVMDGRFVPNITIGPLIVDAIRPLT-KKTL 65
Query: 68 ETHMMVQNPQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPMA 127
+ H+M+ P++++E A A D + HV E A
Sbjct: 66 DVHLMIVEPEKYVEDFAKAGADIISVHV----------------------------EHNA 97
Query: 128 DANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIMTVE 187
++ + + QI+E G K G + P TP+D + + DL+LIM+V
Sbjct: 98 SPHLH-------------RTLCQIRELGKKAGAVLNPSTPLDFLEYVLPVCDLILIMSVN 144
Query: 188 PGFGGQKFMQDMMPKVKWLR----ENYPTLNIEVDGGVGPNTIDECAKC 232
PGFGGQ F+ +++PK++ LR E IEVDGG+ PN + +
Sbjct: 145 PGFGGQSFIPEVLPKIRALRQMCDERGLDPWIEVDGGLKPNNTWQVLEA 193
>3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate,
(beta/alpha)8 barrel, carbohydrate metabolism,
isomerase; HET: S6P; 2.20A {Escherichia coli} PDB:
3ct7_A*
Length = 231
Score = 210 bits (537), Expect = 3e-68
Identities = 68/231 (29%), Positives = 102/231 (44%), Gaps = 50/231 (21%)
Query: 7 MIGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAF 66
I PS++ DL + + +DS ADY H+D+MDG FVPNLT V ++ K+
Sbjct: 2 KISPSLMCMDLLKFKEQIE-FIDSHADYFHIDIMDGHFVPNLTLSPFFVSQVK-KLATKP 59
Query: 67 FETHMMVQNPQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPM 126
+ H+MV PQ +I +A A D T H E ++
Sbjct: 60 LDCHLMVTRPQDYIAQLARAGADFITLHPETING-------------------------- 93
Query: 127 ADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIMTV 186
++I +I+ MKVGL + P+TPV+ + YI AD + +MTV
Sbjct: 94 ----------QAF------RLIDEIRRHDMKVGLILNPETPVEAMKYYIHKADKITVMTV 137
Query: 187 EPGFGGQKFMQDMMPKVKWLRE-----NYPTLNIEVDGGVGPNTIDECAKC 232
+PGF GQ F+ +M+ K+ L+ IEVDG T ++
Sbjct: 138 DPGFAGQPFIPEMLDKLAELKAWREREGLEYE-IEVDGSCNQATYEKLMAA 187
>3cu2_A Ribulose-5-phosphate 3-epimerase; YP_718263.1, ribulose-PHOS
epimerase family, structural genomics, joint center for
STR genomics, JCSG; 1.91A {Haemophilus somnus}
Length = 237
Score = 209 bits (535), Expect = 6e-68
Identities = 38/240 (15%), Positives = 86/240 (35%), Gaps = 45/240 (18%)
Query: 1 MSHVQCM----IGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVK 56
+S +Q + + IL+++ L+ E LL++ + LH D+ DG F T G +K
Sbjct: 5 LSLIQQLKQQKLSVGILSANWLQLNEEVTTLLENQINVLHFDIADGQFSSLFTVGAIGIK 64
Query: 57 CLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVG 116
F + H+MV+N + + + + T +E + I + +
Sbjct: 65 YFP---THCFKDVHLMVRNQLEVAKAVVANGANLVTLQLEQYHDFALTIEWLAKQKTTYA 121
Query: 117 QVLQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIE 176
+ + +G + P+TP+ + Y++
Sbjct: 122 N----------------------------------QVYPVLIGACLCPETPISELEPYLD 147
Query: 177 SADLVLIMTVEPGFGGQKFMQDMMPKVKWLR----ENYPTLNIEVDGGVGPNTIDECAKC 232
D++ ++T++P G + + ++ +V + I +DG + +
Sbjct: 148 QIDVIQLLTLDPRNGTKYPSELILDRVIQVEKRLGNRRVEKLINIDGSMTLELAKYFKQG 207
>3exr_A RMPD (hexulose-6-phosphate synthase); beta barrel, lyase; 1.70A
{Streptococcus mutans} PDB: 3exs_A* 3ext_A
Length = 221
Score = 80.0 bits (197), Expect = 4e-18
Identities = 30/219 (13%), Positives = 64/219 (29%), Gaps = 47/219 (21%)
Query: 16 DLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQN 75
D SNL + S + +DV++ V L G +V+ LR+ P +
Sbjct: 13 DHSNL-KGAITAAVSVGN--EVDVIEAGTVCLLQVGSELVEVLRSLFPDKIIVADTKCAD 69
Query: 76 PQQWIEPM-ADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPMADANVDQY 134
+ A D T
Sbjct: 70 AGGTVAKNNAVRGADWMTCICSA------------------------------------- 92
Query: 135 TFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIES--ADLVLIMTVEPGFGG 192
+ + + I I ++ + + D +++++ + + + + G
Sbjct: 93 --TIPTMKAARKAIEDINPDKGEIQVELYGDWTYDQAQQWLDAGISQAIYHQSRDALLAG 150
Query: 193 QKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAK 231
+ + + + KVK L E + V GG+ +T+
Sbjct: 151 ETWGEKDLNKVKKLIE--MGFRVSVTGGLSVDTLKLFEG 187
>3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A
{Mycobacterium gastri}
Length = 207
Score = 77.0 bits (189), Expect = 4e-17
Identities = 25/221 (11%), Positives = 54/221 (24%), Gaps = 48/221 (21%)
Query: 12 ILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHM 71
+ DL + + L A+ ++D+++ G V+ ++ P M
Sbjct: 4 QVAIDLLST-EAALELAGKVAE--YVDIIELGTPLIKAEGLSVITAVKKAHPDKIVFADM 60
Query: 72 MVQNPQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPMADANV 131
+ + +A A
Sbjct: 61 KTMDAGELEADIA------------------------------------------FKAGA 78
Query: 132 DQYTFHVE-PVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIMTVEPGF 190
D T + ++ + V + + A+ + + + + G
Sbjct: 79 DLVTVLGSADDSTIAGAVKAAQAHNKGVVVDLIGIEDKATRAQEVRALG-AKFVEMHAGL 137
Query: 191 GGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAK 231
Q + + E + V GGV TI K
Sbjct: 138 DEQAKPGFDLNGLLAAGEKAR-VPFSVAGGVKVATIPAVQK 177
>3jr2_A Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulonate-6-phosphate
decarboxylase, ULAD, niaid,CSG bound, biosynthetic
protein; HET: MSE; 1.80A {Vibrio cholerae} PDB: 3ieb_A*
Length = 218
Score = 71.1 bits (174), Expect = 6e-15
Identities = 27/219 (12%), Positives = 63/219 (28%), Gaps = 50/219 (22%)
Query: 16 DLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQN 75
D +NL +++ + + A ++DV++ + G V LR+ P M +
Sbjct: 14 DQTNL-TDAVAVASNVAS--YVDVIEVGTILAFAEGMKAVSTLRHNHPNHILVCDMKTTD 70
Query: 76 PQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPMADANVDQYT 135
+ MA +A D T
Sbjct: 71 GGAILSRMA------------------------------------------FEAGADWIT 88
Query: 136 FHVE-PVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIES--ADLVLIMTVEPGFGG 192
+ + + E ++ + I + +++ + + + G
Sbjct: 89 VSAAAHIATIAACKKVADELNGEIQIEIYGNWTMQDAKAWVDLGITQAIYHRSRDAELAG 148
Query: 193 QKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAK 231
+ D + K++ L + + + GG+ P I
Sbjct: 149 IGWTTDDLDKMRQLSAL--GIELSITGGIVPEDIYLFEG 185
>1q6o_A Humps, 3-keto-L-gulonate 6-phosphate decarboxylase, D-; beta
barrel, lyase; HET: LG6; 1.20A {Escherichia coli} SCOP:
c.1.2.3 PDB: 1kw1_A* 1q6l_A* 1kv8_A* 1q6q_A* 1q6r_A*
1xbv_A* 1so5_A* 1so4_A* 1xby_A* 1so3_A* 1so6_A* 1xbz_A*
1xbx_A*
Length = 216
Score = 67.7 bits (165), Expect = 1e-13
Identities = 22/219 (10%), Positives = 59/219 (26%), Gaps = 50/219 (22%)
Query: 16 DLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQN 75
D + + A+ +D+++ + + G V+ L+ P + +
Sbjct: 11 DNQTM-DSAYETTRLIAE--EVDIIEVGTILCVGEGVRAVRDLKALYPHKIVLADAKIAD 67
Query: 76 PQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPMADANVDQYT 135
+ + M +AN D T
Sbjct: 68 AGKILSRMC------------------------------------------FEANADWVT 85
Query: 136 FHVE-PVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIES--ADLVLIMTVEPGFGG 192
++ + KE V + + + ++ ++ +V + + G
Sbjct: 86 VICCADINTAKGALDVAKEFNGDVQIELTGYWTWEQAQQWRDAGIGQVVYHRSRDAQAAG 145
Query: 193 QKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAK 231
+ + + +K L + + V GG+ +
Sbjct: 146 VAWGEADITAIKRLSD--MGFKVTVTGGLALEDLPLFKG 182
>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase;
1.65A {Salmonella typhimurium}
Length = 211
Score = 66.0 bits (161), Expect = 3e-13
Identities = 32/218 (14%), Positives = 62/218 (28%), Gaps = 49/218 (22%)
Query: 16 DLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQN 75
D L E+ +D D +D+++ + G +K ++ K P + +
Sbjct: 8 DELTL-PEAMVFMDKVVD--DVDIIEVGTPFLIREGVNAIKAIKEKYPHKEVLADAKIMD 64
Query: 76 PQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPMADANVDQYT 135
+ + DA D T
Sbjct: 65 GGHFESQLL------------------------------------------FDAGADYVT 82
Query: 136 FHVE-PVDNVPQVIRQIKEAGMKVGLAIKPK-TPVDVIAEYIESADLVLIMTVEPGFGGQ 193
V + IR KEAG +V + + + E+ ++ V G Q
Sbjct: 83 VLGVTDVLTIQSCIRAAKEAGKQVVVDMICVDDLPARVRLLEEAG--ADMLAVHTGTDQQ 140
Query: 194 KFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAK 231
+ + + + + I V GG+ T+ + A
Sbjct: 141 AAGRKPIDDLITMLKVRRKARIAVAGGISSQTVKDYAL 178
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 45.8 bits (108), Expect = 9e-06
Identities = 44/261 (16%), Positives = 80/261 (30%), Gaps = 90/261 (34%)
Query: 53 PVVKCLRNKIPKAFFET------HMMVQNPQQWIEPMADANVDQYTFHVEPVDNVPQVIR 106
+ + N+ F +T +++ NP T H + +
Sbjct: 1640 KAAQDVWNRADNHFKDTYGFSILDIVINNPVN------------LTIH-----FGGEKGK 1682
Query: 107 QIKEAGMKV-------GQVLQDWIEPMADANVDQYTFHVEPVD--NVPQ----------- 146
+I+E + G++ + I + + YTF + Q
Sbjct: 1683 RIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFR-SEKGLLSATQFTQPALTLMEK 1741
Query: 147 -VIRQIKEAGMKVGLAIKPKTPVDVIA-----EYIESADLVL---IMTVEPGF------G 191
+K G + P A EY +A L +M++E G
Sbjct: 1742 AAFEDLKSKG------LIP--ADATFAGHSLGEY--AA-LASLADVMSIESLVEVVFYRG 1790
Query: 192 GQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKCLTGFGGQKFMQDMMPKVKW 251
MQ +P+ + R NY + + P + A + Q ++ + + W
Sbjct: 1791 --MTMQVAVPRDELGRSNYGMI------AINPGRV---AASFSQEALQYVVERVGKRTGW 1839
Query: 252 LRE--NYPTLNIE----VDGG 266
L E NY N+E V G
Sbjct: 1840 LVEIVNY---NVENQQYVAAG 1857
Score = 36.6 bits (84), Expect = 0.009
Identities = 28/114 (24%), Positives = 42/114 (36%), Gaps = 37/114 (32%)
Query: 150 Q-IKEAGMKVGLAIKPKTPVDVIAEYI-ESADLVL----------IMTVEPG-----FGG 192
Q +E GM G+ + + A+ + AD I+ P FGG
Sbjct: 1624 QGSQEQGM--GMDLYKTSKA---AQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGG 1678
Query: 193 QKFMQDMMPKVKWLRENYPTLNIE--VDGGVGPNTI----DECAKCLTGFGGQK 240
+K K +RENY + E VDG + I +E + T F +K
Sbjct: 1679 EK--------GKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYT-FRSEK 1723
Score = 32.7 bits (74), Expect = 0.14
Identities = 27/104 (25%), Positives = 37/104 (35%), Gaps = 40/104 (38%)
Query: 191 GGQKFMQDM-M------PKVK--W------LRENY--PTLNIEVDGGVGPNTIDECAKCL 233
G Q+ Q M M + W ++ Y L+I V N L
Sbjct: 1625 GSQE--QGMGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDI-----VINNP-----VNL 1672
Query: 234 T-GFGGQKFMQDMMPKVKWLRENYPTLNIE--VDGGVGPNTIDE 274
T FGG+K K +RENY + E VDG + I +
Sbjct: 1673 TIHFGGEK--------GKRIRENYSAMIFETIVDGKLKTEKIFK 1708
Score = 32.3 bits (73), Expect = 0.20
Identities = 24/158 (15%), Positives = 46/158 (29%), Gaps = 65/158 (41%)
Query: 21 HSESQNL-----LDSGADYLHL-DVMDGTFVPNLTF--GHPVVKCLRNKIPK---AFFET 69
HS L L S AD + + +++ + F G ++ +P+
Sbjct: 1762 HS----LGEYAALASLADVMSIESLVE------VVFYRG----MTMQVAVPRDELGRSNY 1807
Query: 70 HMMVQNPQQWIEPMADANVDQY--------TFHVEPV-DNVP--QV-------------- 104
M+ NP + + + + VE V NV Q
Sbjct: 1808 GMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTN 1867
Query: 105 -IRQIKEAGMKVGQVLQDWIEPMADANVDQYTFHVEPV 141
+ IK + + ++ Q + +E V
Sbjct: 1868 VLNFIKLQKIDIIEL--------------QKSLSLEEV 1891
Score = 30.8 bits (69), Expect = 0.64
Identities = 43/287 (14%), Positives = 88/287 (30%), Gaps = 85/287 (29%)
Query: 11 SILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETH 70
+LN L+ E+ L G D +H L + ++ K +
Sbjct: 82 QVLNLCLT--EFENCYL--EGND-IH------ALAAKLLQENDTTLVKTKELIKNYITAR 130
Query: 71 MMVQNPQQWIEPMA--------DA----------NVDQY---------TFH--VEP-VDN 100
+M + P A +A N D Y T+H V +
Sbjct: 131 IMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKF 190
Query: 101 VPQVIRQIKEAGMKVGQV------LQDWIEPMADANVDQYTFHVEPVDNVPQV-IRQI-- 151
+ + ++ + +V + +W+E ++ Y + P+ + P + + Q+
Sbjct: 191 SAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSI-PI-SCPLIGVIQLAH 248
Query: 152 -----KEAGMKVGLAIKPKTPVDVIAEY----IESADLVLIMTVEPGFGGQKFMQDMMPK 202
K G TP ++ + S LV + + + F +
Sbjct: 249 YVVTAKLLGF---------TPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKA 299
Query: 203 VKWL-----R--ENYPTLNIEVDGGVGPNTIDECAKCLTGFGGQKFM 242
+ L R E YP ++ P+ +++ + G M
Sbjct: 300 ITVLFFIGVRCYEAYPNTSLP------PSILEDSLE--NNEGVPSPM 338
Score = 29.2 bits (65), Expect = 1.7
Identities = 21/157 (13%), Positives = 44/157 (28%), Gaps = 52/157 (33%)
Query: 165 KTPVDVIAEYIESADLVLIMTVEPGFGGQKFMQDMMPKVKWLR-------ENY------- 210
+T ++ + I+ + L + +K + ++WL ++Y
Sbjct: 178 QTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPIS 237
Query: 211 -PTL------NIEVD---GGVGPNTIDECAKCLTGFG--------------GQKFMQDMM 246
P + + V G P + K TG + F +
Sbjct: 238 CPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVR 297
Query: 247 PKVKWL-----R--ENYPTLNIE-------VDGGVGP 269
+ L R E YP ++ ++ G
Sbjct: 298 KAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGV 334
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 41.8 bits (97), Expect = 2e-04
Identities = 39/220 (17%), Positives = 70/220 (31%), Gaps = 52/220 (23%)
Query: 67 FETHMMVQNPQQWIEPMADANVDQYTF-HVEPVDNVPQVI--RQIKEAGMKVGQVLQD-- 121
FET + + DA VD + V+ D ++ +I + +
Sbjct: 9 FETGEHQYQYKDILSVFEDAFVDNFDCKDVQ--DMPKSILSKEEIDHI-IMSKDAVSGTL 65
Query: 122 ---WIEPMADANVDQYTFHVEPV--DNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIE 176
W + + VE V N ++ IK + + P + YIE
Sbjct: 66 RLFWT--LLSKQEEMVQKFVEEVLRINYKFLMSPIKT---------EQRQPSMMTRMYIE 114
Query: 177 SADLVLIMTVEPGF-GGQKFMQDMMPKVK-------WLRENYPTLNIEVDGGVGPNTIDE 228
+ + Q F + + +++ L E P N+ +DG +G
Sbjct: 115 --------QRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLG------ 160
Query: 229 CAK-CLTGFGGQKF-MQDMMP-KVKWL---RENYPTLNIE 262
K + + +Q M K+ WL N P +E
Sbjct: 161 SGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLE 200
Score = 32.9 bits (74), Expect = 0.13
Identities = 28/182 (15%), Positives = 57/182 (31%), Gaps = 49/182 (26%)
Query: 107 QIKEAGMKVGQVLQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKT 166
+ E + +L + + D N D +V + + I + K
Sbjct: 10 ETGEHQYQYKDILSVFEDAFVD-NFD--------CKDVQDMPKSI----------LS-KE 49
Query: 167 PVDVIAEY---IESADLVL-IMTVEPGFGGQKFMQDMM-PKVKWLRENY------PTLNI 215
+D I + + + + QKF+++++ K+L P++
Sbjct: 50 EIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMT 109
Query: 216 EVDGGVGPNTIDECAKCLTGFGGQKFMQDMMPKVK-------WLRENYPTLNIEVDG--G 266
E L Q F + + +++ L E P N+ +DG G
Sbjct: 110 R--------MYIEQRDRLYN-DNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLG 160
Query: 267 VG 268
G
Sbjct: 161 SG 162
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal
stress protein, unknown function; HET: ATP; 1.70A
{Thermus thermophilus} PDB: 3ab7_A*
Length = 268
Score = 32.8 bits (75), Expect = 0.086
Identities = 4/36 (11%), Positives = 13/36 (36%)
Query: 146 QVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLV 181
+ +++ G++ + D + DL+
Sbjct: 203 EAEAYLRDHGVEASALVLGGDAADHLLRLQGPGDLL 238
>2ych_A Competence protein PILM; cell cycle, type IV pilus actin secretion;
HET: ATP; 2.20A {Thermus thermophilus}
Length = 377
Score = 32.9 bits (75), Expect = 0.10
Identities = 18/123 (14%), Positives = 44/123 (35%), Gaps = 32/123 (26%)
Query: 95 VEPVDNVPQVIRQ-IKEAGMKVGQV-----------------------LQDWIEPMADAN 130
V + Q I++ + EA + V +++ + A+
Sbjct: 55 VAEPAALAQEIKELLLEARTRKRYVVTALSNLAVILRPIQVPKMPLKEMEEAVRWEAERY 114
Query: 131 V----DQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADL-VLIMT 185
+ D+ P+ + +V + ++V +A + V + E + A L +++
Sbjct: 115 IPFPIDEVVLDFAPLTPLSEVQEGEQ---VQVMVAAARQEAVAGVLEALRGAGLVPVVLD 171
Query: 186 VEP 188
V+P
Sbjct: 172 VKP 174
>1zy9_A Alpha-galactosidase; TM1192, struc genomics, joint center for
structural genomics, JCSG, prote structure initiative,
PSI, hydrolase; 2.34A {Thermotoga maritima} SCOP:
b.30.5.11 c.1.8.13
Length = 564
Score = 33.1 bits (75), Expect = 0.10
Identities = 13/74 (17%), Positives = 29/74 (39%), Gaps = 6/74 (8%)
Query: 91 YTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPMADANVDQYTFHVEPVDNVPQVIRQ 150
Y + + + ++ K +V Q+ + + + D V + F +V ++ +
Sbjct: 205 YFLDLTW-EETLKNLKLAKNFPFEVFQIDDAYEKDIGDWLVTRGDF-----PSVEEMAKV 258
Query: 151 IKEAGMKVGLAIKP 164
I E G G+ P
Sbjct: 259 IAENGFIPGIWTAP 272
>1rh9_A Endo-beta-mannanase; endo-beta-mannase, retaining, glycoside
hydrolase family 5; 1.50A {Solanum lycopersicum} SCOP:
c.1.8.3
Length = 373
Score = 31.8 bits (71), Expect = 0.26
Identities = 16/107 (14%), Positives = 39/107 (36%), Gaps = 7/107 (6%)
Query: 74 QNPQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPMADANVDQ 133
+ Q W+ MA + H+ + +++ ++I +D
Sbjct: 188 KTFQNWVLEMAGYLKSIDSNHLLEIGLEGFYGNDMRQYNPNSYIFGTNFISNNQVQGIDF 247
Query: 134 YTFHVEPVDNVPQVIRQIKEAGMK------VGLAIKPKTPVDVIAEY 174
T H+ P +P + ++ ++ + + K P+ +IAE+
Sbjct: 248 TTIHMYPNQWLPGLTQEAQDKWASQWIQVHIDDSKMLKKPL-LIAEF 293
>3frw_A Putative Trp repressor protein; structural genomics, APC21159,
PSI-2, P structure initiative; 2.05A {Ruminococcus obeum
atcc 29174} PDB: 3g1c_A
Length = 107
Score = 29.7 bits (67), Expect = 0.29
Identities = 11/50 (22%), Positives = 18/50 (36%), Gaps = 1/50 (2%)
Query: 203 VKWLRENYPTLNIEVDGGVGPNTIDECAKCLT-GFGGQKFMQDMMPKVKW 251
K L + L+I G TI + L G G + + M + +
Sbjct: 52 AKMLTDKRTYLDISEKTGASTATISRVNRSLNYGNDGYEMVFSRMKEKET 101
>2o55_A Putative glycerophosphodiester phosphodiesterase; beta barrel,
structural genomics, protein structure initiati 2; 2.81A
{Galdieria sulphuraria}
Length = 258
Score = 30.7 bits (70), Expect = 0.40
Identities = 12/109 (11%), Positives = 31/109 (28%), Gaps = 23/109 (21%)
Query: 50 FGHPVVKCLRN---KIPKAFFETHMMVQNPQQWIEPMADANVDQYTFHVEPVDNVPQVIR 106
F H + L+ + + +M P ++E + + + + + +
Sbjct: 149 FHHEALAHLKALCPDVKITYLFNYMGQPTPLDFVEQACYGDANGVSMLFHYLT--KEQVC 206
Query: 107 QIKEAGMKVGQVLQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAG 155
E G+ V V + D+ + ++ E
Sbjct: 207 TAHEKGLSV--------------TV--WM--PWIFDDSEEDWKKCLELQ 237
>1yd7_A 2-keto acid:ferredoxin oxidoreductase subunit alpha; structural
genomics, southeast collaboratory for structural
genomics, secsg; 2.30A {Pyrococcus furiosus}
Length = 395
Score = 31.0 bits (71), Expect = 0.45
Identities = 11/46 (23%), Positives = 23/46 (50%), Gaps = 7/46 (15%)
Query: 146 QVIRQIKEAGMKVGLAIKPKT----PVDVIAEYIESADLVLIMTVE 187
+ ++ ++E G+K GL +K +T ++I E D + + E
Sbjct: 308 RAVKMLREEGIKAGL-LKIETIWPFDFELIERIAERVDKLYV--PE 350
>3kzx_A HAD-superfamily hydrolase, subfamily IA, variant; ssgcid, NIH,
niaid, SBRI, UW, emerald biostructures, ehrlich
chaffeensis; 1.90A {Ehrlichia chaffeensis}
Length = 231
Score = 30.0 bits (68), Expect = 0.74
Identities = 12/93 (12%), Positives = 30/93 (32%), Gaps = 8/93 (8%)
Query: 27 LLDSGADYLHLDVMDGTFVPNLTFGHPVV---KCLRNKIPKAFFETHMMVQNPQQWIEPM 83
L+D+ + + G+ + + IPK T + + + I
Sbjct: 36 LIDTSIN-IDRTTFYQVLD---QMGYKNIDLDSIPNSTIPKYL-ITLLGKRWKEATILYE 90
Query: 84 ADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVG 116
Q + + D +++ +KE + +
Sbjct: 91 NSLEKSQKSDNFMLNDGAIELLDTLKENNITMA 123
>3s6j_A Hydrolase, haloacid dehalogenase-like family; structural genomics,
PSI-2; 2.20A {Pseudomonas syringae PV}
Length = 233
Score = 29.9 bits (68), Expect = 0.76
Identities = 4/44 (9%), Positives = 18/44 (40%), Gaps = 3/44 (6%)
Query: 121 DWIEPMADANVDQY---TFHVEPVDNVPQVIRQIKEAGMKVGLA 161
+ E +++ + Y + + +++ + + +K +A
Sbjct: 70 EQAERLSEKHAQAYERLQHQIIALPGAVELLETLDKENLKWCIA 113
>3kor_A Possible Trp repressor; putative DNA-binding Trp repressor, TRPR
like protein, struc genomics, transcription; 1.60A
{Staphylococcus aureus}
Length = 119
Score = 29.0 bits (65), Expect = 0.81
Identities = 10/50 (20%), Positives = 17/50 (34%), Gaps = 2/50 (4%)
Query: 203 VKWLRENYPTLNIEVDGGVGPNTIDECAKCLT-GFGG-QKFMQDMMPKVK 250
K +++ Y IE + G TI + L G + M +
Sbjct: 69 AKMIKQGYTYATIEQESGASTATISRVKRSLQWGNDAYTMILDRMNIETN 118
>3ks6_A Glycerophosphoryl diester phosphodiesterase; structural genomics,
joint center for structural genomics, JCSG; HET: MSE;
1.80A {Agrobacterium tumefaciens str} PDB: 3ks5_A*
Length = 250
Score = 29.1 bits (66), Expect = 1.3
Identities = 10/70 (14%), Positives = 24/70 (34%), Gaps = 6/70 (8%)
Query: 50 FGHPVVKCLRNKIPK----AFFETHMMVQNPQQWIEPMADANVDQYTFHVEPVDNVPQVI 105
F + L + + + P IE ++ + H++ D ++
Sbjct: 140 FLLASMDELWKATTRPRLWLVSPSVLQQLGPGAVIETAIAHSIHEIGVHIDTAD--AGLM 197
Query: 106 RQIKEAGMKV 115
Q++ AG+
Sbjct: 198 AQVQAAGLDF 207
>1qnr_A Endo-1,4-B-D-mannanase; hydrolase, anomalous scattering; HET: NAG
MAB; 1.4A {Trichoderma reesei} SCOP: c.1.8.3 PDB:
1qno_A* 1qnq_A* 1qnp_A* 1qns_A*
Length = 344
Score = 29.4 bits (65), Expect = 1.3
Identities = 14/98 (14%), Positives = 28/98 (28%), Gaps = 1/98 (1%)
Query: 77 QQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPMADANVDQYTF 136
QW ++ + H+ + + + A D+ + + ++D TF
Sbjct: 181 VQWATSVSQYVKSLDSNHLVTLGDEGLGLSTGDGAYPYTYGEGTDFAKNVQIKSLDFGTF 240
Query: 137 HVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEY 174
H+ P + P V EY
Sbjct: 241 HLYPDSWGTNYTWGNGWIQTHAAACLAAGKPC-VFEEY 277
>3i45_A Twin-arginine translocation pathway signal protei; structural
genomics; 1.36A {Rhodospirillum rubrum}
Length = 387
Score = 28.9 bits (65), Expect = 1.9
Identities = 20/159 (12%), Positives = 44/159 (27%), Gaps = 31/159 (19%)
Query: 74 QNPQQWIEPMADANVDQ-----------YTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDW 122
Q +A Y + V + + A +V V + W
Sbjct: 125 STYMQ-AAMLAAEAAKLPITRWATIAPNYEY---GQSAVARFKELLLAARPEVTFVAEQW 180
Query: 123 -----------IEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVI 171
++ + A + F+V ++P+ +R+ + G+ G + + +
Sbjct: 181 PALYKLDAGPTVQALQQAEPE-GLFNVLFGADLPKFVREGRVRGLFAG--RQVVSMLTGE 237
Query: 172 AEYIESADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENY 210
EY+ G + + E Y
Sbjct: 238 PEYLNPLKDEAPEGWI--VTGYPWYDIDTAPHRAFVEAY 274
>2edp_A Fragment, shroom family member 4; APX/shroom family member,
KIAA1202 protein, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 100
Score = 27.3 bits (61), Expect = 2.0
Identities = 8/36 (22%), Positives = 12/36 (33%)
Query: 11 SILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVP 46
+I + L E+ L+ L L V P
Sbjct: 62 NINGTPLYGSRQEALILIKGSFRILKLIVRRRNSGP 97
>1swv_A Phosphonoacetaldehyde hydrolase; HAD enzyme superfamily,
phosphonotase, metal binding; 2.30A {Bacillus cereus}
SCOP: c.108.1.3 PDB: 1sww_A 2iof_A* 2ioh_A 1rql_A 1rqn_A
2iof_K* 1rdf_A 1fez_A
Length = 267
Score = 28.7 bits (64), Expect = 2.0
Identities = 20/124 (16%), Positives = 44/124 (35%), Gaps = 13/124 (10%)
Query: 40 MDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTFHVEPVD 99
GT V ++ F + ++ +PM +D HV +
Sbjct: 13 WAGTTVD--YGCFAPLEVFM-----EIFHKRGVAITAEEARKPMGLLKID----HVRALT 61
Query: 100 NVPQVIRQIKEA--GMKVGQVLQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMK 157
+P++ + + +Q+ E + + P++ V +VI ++E G+K
Sbjct: 62 EMPRIASEWNRVFRQLPTEADIQEMYEEFEEILFAILPRYASPINGVKEVIASLRERGIK 121
Query: 158 VGLA 161
+G
Sbjct: 122 IGST 125
>3m6y_A 4-hydroxy-2-oxoglutarate aldolase; structural genomics, MCSG,
lyase, PSI-2, protein structure initiative; HET: MSE;
1.45A {Bacillus cereus} PDB: 3n73_A 3mux_A
Length = 275
Score = 28.5 bits (63), Expect = 2.2
Identities = 32/242 (13%), Positives = 76/242 (31%), Gaps = 45/242 (18%)
Query: 10 PSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFET 69
+ + L+N ++++ ++ Y+ + V+ + P + +K +I A
Sbjct: 35 GRVALNVLANNIENAKDIFEAAEGYVVVGVLSKDY-PTVEEAVTAMKAYGKEIDDAV--- 90
Query: 70 HMMVQ--NPQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPMA 127
+ + + +Q A V + H ++ QV + +G+ WI
Sbjct: 91 SIGLGAGDNRQA------AVVAEIAKHYPG-SHINQVFPSVGATRANLGEK-DSWI---- 138
Query: 128 DANVDQYTFHVEPVDNVPQV-IRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIMTV 186
V P V V I + AI P I++A + +
Sbjct: 139 -------NSLVSPTGKVGYVNISTGPISAAGEEKAIVP----------IKTA---IALVR 178
Query: 187 EPGFGGQKFM----QDMMPKVKWLRENYPT--LNIEVDGGVGPNTIDECAKCLTGFGGQK 240
+ G K+ + + + + +E GG+ + + ++
Sbjct: 179 DMGGNSLKYFPMKGLAHEEEYRAVAKACAEEGFALEPTGGIDKENFETIVRIALEANVEQ 238
Query: 241 FM 242
+
Sbjct: 239 VI 240
>2r6i_A AGR_C_2717P, uncharacterized protein ATU1473; chaperone, structural
genomics, APC6123, PSI-2, protein STRU initiative; 2.59A
{Agrobacterium tumefaciens str} SCOP: d.381.1.1
Length = 284
Score = 28.6 bits (63), Expect = 2.4
Identities = 11/71 (15%), Positives = 19/71 (26%), Gaps = 2/71 (2%)
Query: 161 AIKPKTPVDVIAEYIESADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGG 220
A + + I + S DL+ +P + P + W + G
Sbjct: 126 ASDTQAVFEDILRFSSS-DLLCYRAGDPEALVARQTDYWDPVLDWATNVLG-ARFILVEG 183
Query: 221 VGPNTIDECAK 231
V A
Sbjct: 184 VMHRDQPREAI 194
>3b0p_A TRNA-dihydrouridine synthase; TIM barrel, oxidoreductase; HET: FMN;
1.70A {Thermus thermophilus} PDB: 3b0u_X* 3b0v_C*
Length = 350
Score = 28.4 bits (64), Expect = 2.5
Identities = 9/38 (23%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
Query: 201 PKVKWLRENYPTLNIEVDGGVGPNTIDECAKCLTGFGG 238
V L+ ++P L +GG+ +++E L G
Sbjct: 186 DWVHRLKGDFPQLTFVTNGGI--RSLEEALFHLKRVDG 221
>3iru_A Phoshonoacetaldehyde hydrolase like protein; phosphonoacetaldehyde
hydrolase like P structural genomics, PSI-2, protein
structure initiative; 2.30A {Oleispira antarctica}
Length = 277
Score = 28.3 bits (63), Expect = 2.5
Identities = 10/43 (23%), Positives = 17/43 (39%), Gaps = 3/43 (6%)
Query: 119 LQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLA 161
L D P+ V Q + + +V ++ G+KVG
Sbjct: 94 LYDLFAPIQTRIVAQ---RSQLIPGWKEVFDKLIAQGIKVGGN 133
>3obe_A Sugar phosphate isomerase/epimerase; structural genomics, joint
center for structural genomics, J protein structure
initiative; HET: MSE; 1.70A {Parabacteroides distasonis}
Length = 305
Score = 28.5 bits (63), Expect = 2.6
Identities = 11/72 (15%), Positives = 23/72 (31%), Gaps = 7/72 (9%)
Query: 91 YTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPMADANVDQYTFHVEPVDNVPQVIRQ 150
Y+ E + ++P + ++ +AG +E P + +
Sbjct: 28 YSLGQELLQDMPNGLNRLAKAGYT-------DLEIFGYREDTGKFGDYNPKNTTFIASKD 80
Query: 151 IKEAGMKVGLAI 162
K+ GL I
Sbjct: 81 YKKMVDDAGLRI 92
>1qyi_A ZR25, hypothetical protein; structural genomics, PSI, protein
structure initiative, NORT structural genomics
consortium, NESG; 2.50A {Staphylococcus aureus subsp}
SCOP: c.108.1.13
Length = 384
Score = 28.2 bits (62), Expect = 2.8
Identities = 17/71 (23%), Positives = 28/71 (39%), Gaps = 4/71 (5%)
Query: 138 VEPVDNVPQVIRQIKEAGMKVGLAI-KPKTPVDVIAEY---IESADLVLIMTVEPGFGGQ 193
+ PVD V ++ +K AG ++G+A +P T V E + + I T +
Sbjct: 214 LRPVDEVKVLLNDLKGAGFELGIATGRPYTETVVPFENLGLLPYFEADFIATASDVLEAE 273
Query: 194 KFMQDMMPKVK 204
P K
Sbjct: 274 NMYPQARPLGK 284
>2nr7_A Secretion activator protein, putative; APCC85792, porphyromonas
gingivalis W83 structural genomics, PSI-2, protein
structure initiative; 1.30A {Porphyromonas gingivalis}
SCOP: d.2.1.9
Length = 195
Score = 27.9 bits (61), Expect = 3.1
Identities = 10/55 (18%), Positives = 18/55 (32%), Gaps = 13/55 (23%)
Query: 178 ADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKC 232
A++++ G G Q + L ++ DG VG T+
Sbjct: 91 ANILVDWVWGSGKYGIVIPQRI-------------LGVQADGIVGNKTLQAVNSA 132
>4fhd_A Spore photoproduct lyase; partial TIM-barrel, DNA repair, damaged
DNA; HET: EEM 0TT; 2.00A {Geobacillus
thermodenitrificans} PDB: 4fhc_A* 4fhg_A* 4fhe_A*
4fhf_A*
Length = 368
Score = 28.2 bits (62), Expect = 3.2
Identities = 14/94 (14%), Positives = 33/94 (35%), Gaps = 15/94 (15%)
Query: 137 HVEPVDNVP----QVIRQIKEAGMKVGLAIKPKTPV--------DVIAEYIESADLVLIM 184
H EP + R++ AG K+G + P ++ E + + +
Sbjct: 231 HFEPGTSSFDGRLAAARKVAGAGYKLGFVVAPIYRHEGWERGYFELFQELARQLEGMDLS 290
Query: 185 TVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVD 218
+ +F + + + + YP +++D
Sbjct: 291 DLTFELIQHRFTKPAK---RVIEQRYPKTRLDLD 321
>2pr7_A Haloacid dehalogenase/epoxide hydrolase family; NP_599989.1,
uncharacterized protein, structural genomics; 1.44A
{Corynebacterium glutamicum atcc 13032}
Length = 137
Score = 27.4 bits (61), Expect = 3.2
Identities = 4/44 (9%), Positives = 13/44 (29%), Gaps = 8/44 (18%)
Query: 118 VLQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLA 161
++ D+ + E ++ K+ G+ +
Sbjct: 5 LIVDYAGVLDG--------TDEDQRRWRNLLAAAKKNGVGTVIL 40
>3riy_A NAD-dependent deacetylase sirtuin-5; desuccinylase, demalonylase,
posttranslational modification, binding domain, rossmann
fold domain; HET: SLL NAD; 1.55A {Homo sapiens} PDB:
3rig_A* 2b4y_A* 2nyr_A*
Length = 273
Score = 27.6 bits (62), Expect = 4.0
Identities = 5/32 (15%), Positives = 10/32 (31%), Gaps = 4/32 (12%)
Query: 164 PKTPVDVIAEYIESADLVLI----MTVEPGFG 191
++ + + DL L+ V P
Sbjct: 199 DPAILEEVDRELAHCDLCLVVGTSSVVYPAAM 230
>1r30_A Biotin synthase; SAM radical protein, TIM barrel, FES cluster,
transferase; HET: SAM DTB; 3.40A {Escherichia coli}
SCOP: c.1.28.1
Length = 369
Score = 27.7 bits (62), Expect = 4.2
Identities = 14/79 (17%), Positives = 38/79 (48%), Gaps = 19/79 (24%)
Query: 98 VDNVPQVIRQIKEAGMKV----GQVLQDWIEPMADANVDQYTFHVE--PVDNVPQVI--- 148
+ + Q+++ +K G++ G + + + +A+A +D Y +++ P + +I
Sbjct: 133 MPYLEQMVQGVKAMGLEACMTLGTLSESQAQRLANAGLDYYNHNLDTSP-EFYGNIITTR 191
Query: 149 ---------RQIKEAGMKV 158
++++AG+KV
Sbjct: 192 TYQERLDTLEKVRDAGIKV 210
>2ego_A General receptor for phosphoinositides 1- associated scaffold
protein; PDZ domain, ligand-free, protein binding; 1.80A
{Rattus norvegicus} PDB: 2egn_A 2egk_A 2pnt_A
Length = 96
Score = 26.2 bits (58), Expect = 5.0
Identities = 14/74 (18%), Positives = 26/74 (35%), Gaps = 18/74 (24%)
Query: 99 DNVPQVIRQIKE------AGMKVGQVLQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIK 152
+ + ++ E AG+ G D I + NV+ H +++ IK
Sbjct: 35 VEMVTFVARVHESSPAQLAGLTPG----DTIASVNGLNVEGIR-H-------REIVDIIK 82
Query: 153 EAGMKVGLAIKPKT 166
+G + L T
Sbjct: 83 ASGNVLRLETLYGT 96
>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural
genomics, midwest center for structural genomics
structure initiative; 2.00A {Wolinella succinogenes}
Length = 138
Score = 26.8 bits (60), Expect = 5.1
Identities = 8/36 (22%), Positives = 17/36 (47%)
Query: 146 QVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLV 181
+ E G+ + IK PV+++ E + +L+
Sbjct: 70 KFSTFFTEKGINPFVVIKEGEPVEMVLEEAKDYNLL 105
>3qvq_A Phosphodiesterase OLEI02445; structural genomics, PSI-biology,
midwest center for structu genomics, MCSG, alpha-beta
hydrolase, hydrolase; HET: MSE G3P; 1.60A {Oleispira
antarctica}
Length = 252
Score = 27.2 bits (61), Expect = 5.2
Identities = 14/63 (22%), Positives = 19/63 (30%), Gaps = 8/63 (12%)
Query: 102 PQVIRQIKEA------GMKVGQVLQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAG 155
+ K G V + W E + + H D Q + IK AG
Sbjct: 153 YFALVSAKALWPEIARGYNVSAIPSAWQERLEHLDCAGLHIHQSFFD--VQQVSDIKAAG 210
Query: 156 MKV 158
KV
Sbjct: 211 YKV 213
>2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm,
phosphoprotein, transport protein, CAsp; 2.60A {Homo
sapiens} PDB: 2eej_A
Length = 91
Score = 26.1 bits (58), Expect = 5.7
Identities = 14/76 (18%), Positives = 30/76 (39%), Gaps = 18/76 (23%)
Query: 102 PQVIRQIKE------AGMKVGQVLQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAG 155
I+++++ AG++ D I + NV + +V+ +I+ +G
Sbjct: 28 GSFIKEVQKGGPADLAGLEDE----DVIIEVNGVNVLDEP-Y-------EKVVDRIQSSG 75
Query: 156 MKVGLAIKPKTPVDVI 171
V L + K D +
Sbjct: 76 KNVTLLVCGKKAQDTV 91
>3dxi_A Putative aldolase; TIM barrel, 11107N, PSI2, NYSGXRC, structural
genomics, protein structure initiative; 2.04A
{Bacteroides vulgatus atcc 8482}
Length = 320
Score = 27.3 bits (61), Expect = 5.9
Identities = 13/86 (15%), Positives = 30/86 (34%), Gaps = 13/86 (15%)
Query: 135 TFHVEPVDNVPQVIRQIKEAGMKVGLAI------KPKTPVDVIAEYIES-ADLVLIM-TV 186
+ +D + + IK G +VG + + I+ ADL ++ +
Sbjct: 107 AIDPQNIDRAIVLAKAIKTMGFEVGFNVMYMSKWAEMNGFLSKLKAIDKIADLFCMVDSF 166
Query: 187 EPGFGGQKFMQDMMPKVKWLRENYPT 212
G +++ +K +R+
Sbjct: 167 -----GGITPKEVKNLLKEVRKYTHV 187
>3ngh_A PDZ domain-containing protein 1; adaptor protein, SR-BI, signaling
protein; 1.80A {Mus musculus}
Length = 106
Score = 26.2 bits (58), Expect = 6.0
Identities = 17/77 (22%), Positives = 30/77 (38%), Gaps = 18/77 (23%)
Query: 99 DNVPQVIRQIKE------AGMKVGQVLQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIK 152
D +IR I+E AG+ G D + + VD+ H QV+ ++
Sbjct: 24 DTDGHLIRVIEEGSPAEKAGLLDG----DRVLRINGVFVDKEE-H-------AQVVELVR 71
Query: 153 EAGMKVGLAIKPKTPVD 169
++G V L + +
Sbjct: 72 KSGNSVTLLVLDGDSYE 88
>1o4u_A Type II quinolic acid phosphoribosyltransferase; structural
genomics, joint center for structural genomics, J
protein structure initiative; 2.50A {Thermotoga
maritima} SCOP: c.1.17.1 d.41.2.1
Length = 285
Score = 27.1 bits (61), Expect = 6.1
Identities = 14/106 (13%), Positives = 43/106 (40%), Gaps = 27/106 (25%)
Query: 137 HVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDV-------IAEYIES-ADLVLI--MTV 186
H++ + + ++++++ I T ++V +E+ AD+V++ ++
Sbjct: 172 HLKMYGSAERAVQEVRKI-------IPFTTKIEVEVENLEDALRAVEAGADIVMLDNLSP 224
Query: 187 EPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKC 232
E ++ + +++ P + +EV GG+ +
Sbjct: 225 E----------EVKDISRRIKDINPNVIVEVSGGITEENVSLYDFE 260
>1q3o_A Shank1; PDZ, GKAP, peptide binding protein; 1.80A {Rattus
norvegicus} SCOP: b.36.1.1 PDB: 1q3p_A 3qjm_A 3qjn_A
3o5n_A*
Length = 109
Score = 25.9 bits (57), Expect = 6.4
Identities = 16/82 (19%), Positives = 31/82 (37%), Gaps = 18/82 (21%)
Query: 92 TFHVEPVDNVPQVIRQIKE------AGMKVGQVLQDWIEPMADANVDQYTFHVEPVDNVP 145
F P Q + + E AG+++G D++ + NV + H
Sbjct: 36 EFTPTPAFPALQYLESVDEGGVAWRAGLRMG----DFLIEVNGQNVVKVG-H-------R 83
Query: 146 QVIRQIKEAGMKVGLAIKPKTP 167
QV+ I++ G + + + T
Sbjct: 84 QVVNMIRQGGNTLMVKVVMVTR 105
>2oda_A Hypothetical protein pspto_2114; haloacid dehalogenase,
phosphonoacetaldehyde hydrolase, protein binding; HET:
EPE; 1.90A {Pseudomonas syringae PV}
Length = 196
Score = 26.8 bits (59), Expect = 6.7
Identities = 4/53 (7%), Positives = 15/53 (28%), Gaps = 1/53 (1%)
Query: 94 HVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPMADANVDQYTFHVEPVDNVPQ 146
H + ++ +++ GM + + E ++ +
Sbjct: 34 HAQLTPGAQNALKALRDQGMPCA-WIDELPEALSTPLAAPVNDWMIAAPRPTA 85
>3khf_A Microtubule-associated serine/threonine-protein kinase 3; MAST3,
microtubule associated serine/threonine kinase 3, PDZ
domain, structural genomics; 1.20A {Homo sapiens} PDB:
2w7r_A 2kqf_A 2kyl_A 3ps4_A
Length = 99
Score = 25.8 bits (57), Expect = 7.2
Identities = 14/79 (17%), Positives = 28/79 (35%), Gaps = 18/79 (22%)
Query: 97 PVDNVPQVIRQIKE------AGMKVGQVLQDWIEPMADANVDQYTFHVEPVDNVPQVIRQ 150
V V V+ +++ AG++ G D I + +V H V+
Sbjct: 30 DVYTVHHVVWSVEDGSPAQEAGLRAG----DLITHINGESVLGLV-H-------MDVVEL 77
Query: 151 IKEAGMKVGLAIKPKTPVD 169
+ ++G K+ L +
Sbjct: 78 LLKSGNKISLRTTALENTE 96
>1ypf_A GMP reductase; GUAC, purines, pyrimidines, nucleosides,
nucleotides, nucleo nucleoside interconversions, spine,
structural genomics; 1.80A {Bacillus anthracis} PDB:
2a1y_A*
Length = 336
Score = 26.8 bits (60), Expect = 7.2
Identities = 10/84 (11%), Positives = 32/84 (38%), Gaps = 6/84 (7%)
Query: 134 YTFHVEPVDNVPQVIRQIKEAGMKVGLAI--KPKTPVDVIAEYIESADLVLIMTVEPGFG 191
Y H + IR ++ G+ +++ K + + + +T++ G
Sbjct: 73 YIMHRFQPEKRISFIRDMQSRGLIASISVGVKEDE-YEFVQQLAAEHLTPEYITIDIAHG 131
Query: 192 GQKFMQDMMPKVKWLRENYPTLNI 215
+ +M ++ ++++ P +
Sbjct: 132 HSNAVINM---IQHIKKHLPESFV 152
>2p1t_A Retinoic acid receptor RXR-alpha; protein-ligand complex, hormone
receptor; HET: 3TN; 1.80A {Homo sapiens} SCOP: a.123.1.1
PDB: 1mvc_A* 1mzn_A* 1mv9_A* 2p1u_A* 2p1v_A* 2zxz_A*
2zy0_A* 3fug_A* 3nsp_A 3nsq_A* 3r29_A 3r2a_A* 3r5m_A*
3e94_A* 3kwy_A* 1fby_A* 3uvv_B* 3fc6_A* 1rdt_A* 3fal_A*
...
Length = 240
Score = 26.6 bits (59), Expect = 7.4
Identities = 11/50 (22%), Positives = 20/50 (40%), Gaps = 5/50 (10%)
Query: 146 QVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIMTVE-----PGF 190
+ E ++ + + P +P D + ++AD L VE P F
Sbjct: 18 LAVEPKTETYVEANMGLNPSSPNDPVTNICQAADKQLFTLVEWAKRIPHF 67
>3l4f_D SH3 and multiple ankyrin repeat domains protein 1; coiled-coil,
PDZ, guanine-nucleotide releasing factor,
phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Length = 132
Score = 26.1 bits (57), Expect = 7.6
Identities = 16/82 (19%), Positives = 31/82 (37%), Gaps = 18/82 (21%)
Query: 92 TFHVEPVDNVPQVIRQIKE------AGMKVGQVLQDWIEPMADANVDQYTFHVEPVDNVP 145
F P Q + + E AG+++G D++ + NV + H
Sbjct: 56 EFTPTPAFPALQYLESVDEGGVAWRAGLRMG----DFLIEVNGQNVVKVG-H-------R 103
Query: 146 QVIRQIKEAGMKVGLAIKPKTP 167
QV+ I++ G + + + T
Sbjct: 104 QVVNMIRQGGNTLMVKVVMVTR 125
>2d90_A PDZ domain containing protein 1; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Mus musculus}
Length = 102
Score = 25.8 bits (57), Expect = 7.9
Identities = 14/73 (19%), Positives = 28/73 (38%), Gaps = 18/73 (24%)
Query: 99 DNVPQVIRQIKE------AGMKVGQVLQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIK 152
+ Q+I+ I+ AG+K D + + +V+ H V+ I+
Sbjct: 28 EQKGQIIKDIEPGSPAEAAGLKNN----DLVVAVNGKSVEALD-H-------DGVVEMIR 75
Query: 153 EAGMKVGLAIKPK 165
+ G + L + K
Sbjct: 76 KGGDQTTLLVLDK 88
>1fno_A Peptidase T; metallo peptidase, protease, hydrolase; 2.40A
{Salmonella typhimurium} SCOP: c.56.5.4 d.58.19.1 PDB:
1vix_A
Length = 417
Score = 27.1 bits (60), Expect = 7.9
Identities = 15/86 (17%), Positives = 28/86 (32%), Gaps = 5/86 (5%)
Query: 84 ADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPMADANV---DQYTFHVEP 140
VD+ H D + K M++ + + + P + D Y E
Sbjct: 266 MKGTVDRAEMHYIIRDFDRKQFEARKRKMMEIAKKVGKGLHPDCYIELVIEDSYYNMREK 325
Query: 141 VDNVPQVIRQIKEAGMKVGLAIKPKT 166
V P ++ ++A I P+
Sbjct: 326 VVEHPHILDIAQQAMRDCH--ITPEM 349
>3eb8_A Cysteine protease-like VIRA; beta sheet, alpha helix, hydrolase,
secreted, THIO protease, virulence; 2.40A {Shigella
flexneri}
Length = 358
Score = 27.0 bits (59), Expect = 8.0
Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Query: 17 LSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNP 76
L+ HSE + L+DS + L D MDG F G + CL I F+ +Q+
Sbjct: 10 LAEKHSE-KKLMDSFSPSLSQDKMDGEFAHANIDGISIRLCLNKGICSVFYLDGDKIQST 68
Query: 77 Q 77
Q
Sbjct: 69 Q 69
>1w25_A Stalked-cell differentiation controlling protein; two-component
system, ggdef domain, cyclic dinucleotide, cyclic-digmp;
HET: C2E; 2.70A {Caulobacter vibrioides} SCOP: c.23.1.1
c.23.1.1 d.58.29.2 PDB: 2v0n_A* 2wb4_A*
Length = 459
Score = 27.1 bits (60), Expect = 8.0
Identities = 24/136 (17%), Positives = 42/136 (30%), Gaps = 7/136 (5%)
Query: 98 VDNVPQVIRQIKEAGMKVGQVLQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMK 157
V ++ + I E + + + A A +D V VD+ + +++
Sbjct: 115 VRSLTRFKLVIDELRQREASGRRMGVIAGAAARLDGLGGRVLIVDDNERQAQRVAAELGV 174
Query: 158 VGLAIKPKTPVDVIAEYIESADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEV 217
+ P DLV++ F G +F LR T + V
Sbjct: 175 EHRPVIESDPEKAKISAGGPVDLVIVNAAAKNFDGLRF-------TAALRSEERTRQLPV 227
Query: 218 DGGVGPNTIDECAKCL 233
V P+ K L
Sbjct: 228 LAMVDPDDRGRMVKAL 243
>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein,
USP domain, nucleotide binding domain, AMP; HET: MSE
AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4
Length = 175
Score = 26.3 bits (58), Expect = 8.1
Identities = 13/92 (14%), Positives = 29/92 (31%), Gaps = 13/92 (14%)
Query: 93 FHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIK 152
HV+ VD A + + ++ + ++ + +
Sbjct: 51 LHVQVVDEDGFDDVDSIYASPEDFRDMRQSNKAKGLHLLEFFV-------------NKCH 97
Query: 153 EAGMKVGLAIKPKTPVDVIAEYIESADLVLIM 184
E G+ IK P DVI + ++ ++
Sbjct: 98 EIGVGCEAWIKTGDPKDVICQEVKRVRPDFLV 129
>2l97_A HTRA, putative serine protease; HTRA-PDZ, protein binding; NMR
{Streptococcus pneumoniae}
Length = 134
Score = 26.0 bits (58), Expect = 8.1
Identities = 11/62 (17%), Positives = 26/62 (41%), Gaps = 15/62 (24%)
Query: 140 PVDNVPQVIRQIKEAGMKV-----GLAIKPKTPVDVIAEYIESADL-------VLIMTVE 187
P ++ +I Q+++ G KV G+ + + V I ++ V++ +V+
Sbjct: 9 PANDAINIIEQLEKNG-KVTRPALGIQMVNLSN--VSTSDIRRLNIPSNVTSGVIVRSVQ 65
Query: 188 PG 189
Sbjct: 66 SN 67
>2ws2_A NU-class GST, glutathione S-transferase; parasite, nematode; 2.01A
{Haemonchus contortus}
Length = 204
Score = 26.2 bits (58), Expect = 9.8
Identities = 13/43 (30%), Positives = 17/43 (39%), Gaps = 5/43 (11%)
Query: 32 ADYLHLDVMDGTFVPNLTFGHPVVKCLRNKI---P--KAFFET 69
AD ++ P L G P VK K+ P K + ET
Sbjct: 156 ADLYVAEMGFTEHYPKLYDGFPEVKAHAEKVRSNPKLKKWIET 198
>2b7n_A Probable nicotinate-nucleotide pyrophosphorylase; quinolinate
phosphoribosyltransferase, quinolinic acid, HELI pylori,
transferase; HET: NTM; 2.30A {Helicobacter pylori} PDB:
2b7p_A* 2b7q_A*
Length = 273
Score = 26.6 bits (60), Expect = 9.9
Identities = 11/57 (19%), Positives = 23/57 (40%), Gaps = 12/57 (21%)
Query: 178 ADLVLI--MTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKC 232
AD+V+ ++V + + +YP + +E G + +I+ AK
Sbjct: 203 ADIVMCDNLSVL----------ETKEIAAYRDAHYPFVLLEASGNISLESINAYAKS 249
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.137 0.421
Gapped
Lambda K H
0.267 0.0735 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,430,789
Number of extensions: 271487
Number of successful extensions: 1416
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1367
Number of HSP's successfully gapped: 125
Length of query: 277
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 185
Effective length of database: 4,133,061
Effective search space: 764616285
Effective search space used: 764616285
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (25.7 bits)