RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy11600
(277 letters)
>d1rpxa_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Potato
(Solanum tuberosum) [TaxId: 4113]}
Length = 230
Score = 165 bits (420), Expect = 2e-51
Identities = 69/236 (29%), Positives = 103/236 (43%), Gaps = 46/236 (19%)
Query: 1 MSHVQCMIGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRN 60
S ++ PSIL+++ S L + + + +G D++H+DVMDG FVPN+T G VV LR
Sbjct: 6 FSKSDIIVSPSILSANFSKLGEQVKAIEQAGCDWIHVDVMDGRFVPNITIGPLVVDSLRP 65
Query: 61 KIPKAFFETHMMVQNPQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQ 120
+ H+M+ P Q + A D + H E
Sbjct: 66 ITDL-PLDVHLMIVEPDQRVPDFIKAGADIVSVHCEQSST-------------------- 104
Query: 121 DWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADL 180
++ + I QIK G K G+ + P TP+ I +++ DL
Sbjct: 105 ---------------------IHLHRTINQIKSLGAKAGVVLNPGTPLTAIEYVLDAVDL 143
Query: 181 VLIMTVEPGFGGQKFMQDMMPKVK----WLRENYPTLNIEVDGGVGPNTIDECAKC 232
VLIM+V PGFGGQ F++ + K+ E IEVDGGVGP + +
Sbjct: 144 VLIMSVNPGFGGQSFIESQVKKISDLRKICAERGLNPWIEVDGGVGPKNAYKVIEA 199
>d1tqja_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase
{Synechocystis sp. PCC 6803 [TaxId: 1148]}
Length = 221
Score = 152 bits (386), Expect = 2e-46
Identities = 71/230 (30%), Positives = 115/230 (50%), Gaps = 46/230 (20%)
Query: 7 MIGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAF 66
++ PSIL++D S L E + + ++GAD++H+DVMDG FVPN+T G +V +R K
Sbjct: 4 VVAPSILSADFSRLGEEIKAVDEAGADWIHVDVMDGRFVPNITIGPLIVDAIRPLT-KKT 62
Query: 67 FETHMMVQNPQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPM 126
+ H+M+ P++++E A A D + HVE +
Sbjct: 63 LDVHLMIVEPEKYVEDFAKAGADIISVHVEHNAS-------------------------- 96
Query: 127 ADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIMTV 186
++ + + QI+E G K G + P TP+D + + DL+LIM+V
Sbjct: 97 ---------------PHLHRTLCQIRELGKKAGAVLNPSTPLDFLEYVLPVCDLILIMSV 141
Query: 187 EPGFGGQKFMQDMMPKVKWLRENYP----TLNIEVDGGVGPNTIDECAKC 232
PGFGGQ F+ +++PK++ LR+ IEVDGG+ PN + +
Sbjct: 142 NPGFGGQSFIPEVLPKIRALRQMCDERGLDPWIEVDGGLKPNNTWQVLEA 191
>d2flia1 c.1.2.2 (A:3-219) D-ribulose-5-phosphate 3-epimerase
{Streptococcus pyogenes [TaxId: 1314]}
Length = 217
Score = 144 bits (365), Expect = 3e-43
Identities = 77/229 (33%), Positives = 110/229 (48%), Gaps = 48/229 (20%)
Query: 8 IGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFF 67
I PSIL +D +N SE + ++ A+Y+H+D+MDG FVPN++FG VV + K K F
Sbjct: 4 IAPSILAADYANFASELARIEETDAEYVHIDIMDGQFVPNISFGADVVASM-RKHSKLVF 62
Query: 68 ETHMMVQNPQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPMA 127
+ H+MV +P + ++E A
Sbjct: 63 DCHLMVVDP-------------------------------------------ERYVEAFA 79
Query: 128 DANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIMTVE 187
A D T H E ++ +++IK AGMK G+ I P TP + ++ D VLIMTV
Sbjct: 80 QAGADIMTIHTESTRHIHGALQKIKAAGMKAGVVINPGTPATALEPLLDLVDQVLIMTVN 139
Query: 188 PGFGGQKFMQDMMPKVK----WLRENYPTLNIEVDGGVGPNTIDECAKC 232
PGFGGQ F+ + + KV W E + +IEVDGGV TI C +
Sbjct: 140 PGFGGQAFIPECLEKVATVAKWRDEKGLSFDIEVDGGVDNKTIRACYEA 188
>d1h1ya_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Rice
(Oryza sativa) [TaxId: 4530]}
Length = 220
Score = 128 bits (323), Expect = 5e-37
Identities = 93/228 (40%), Positives = 135/228 (59%), Gaps = 46/228 (20%)
Query: 8 IGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFF 67
I PS+L+SD +NL +E+ ++ GAD+LH+D+MDG FVPNLT G PV++ LR KA+
Sbjct: 4 IAPSMLSSDFANLAAEADRMVRLGADWLHMDIMDGHFVPNLTIGAPVIQSLRK-HTKAYL 62
Query: 68 ETHMMVQNPQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPMA 127
+ H+MV NP ++EP+A A +TFH+E + Q
Sbjct: 63 DCHLMVTNPSDYVEPLAKAGASGFTFHIEVSRDNWQ------------------------ 98
Query: 128 DANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIES---ADLVLIM 184
++I+ IK GM+ G++++P TPV+ + +E+ +LVL+M
Sbjct: 99 ------------------ELIQSIKAKGMRPGVSLRPGTPVEEVFPLVEAENPVELVLVM 140
Query: 185 TVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKC 232
TVEPGFGGQKFM +MM KV+ LR+ YP+L+IEVDGG+GP+TID A
Sbjct: 141 TVEPGFGGQKFMPEMMEKVRALRKKYPSLDIEVDGGLGPSTIDVAASA 188
>d1tqxa_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Plasmodium
falciparum [TaxId: 5833]}
Length = 221
Score = 126 bits (317), Expect = 4e-36
Identities = 78/228 (34%), Positives = 118/228 (51%), Gaps = 43/228 (18%)
Query: 7 MIGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAF 66
+I PS+L S++S L E+Q + GA+++HLDVMD FVPNL+FG PV+ L+ F
Sbjct: 4 IIAPSVLASNISKLAEETQRMESLGAEWIHLDVMDMHFVPNLSFGPPVINNLKKYTKSIF 63
Query: 67 FETHMMVQNPQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPM 126
F+ H+MV+ P++++ +Q TFH
Sbjct: 64 FDVHLMVEYPEKYVP--LLKTSNQLTFHF------------------------------- 90
Query: 127 ADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIES--ADLVLIM 184
E + Q+ ++I++ + G++IKPKT V + +++ + VL+M
Sbjct: 91 --------EALNEDTERCIQLAKEIRDNNLWCGISIKPKTDVQKLVPILDTNLINTVLVM 142
Query: 185 TVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKC 232
TVEPGFGGQ FM DMM KV +LR+ Y LNI+VDGG+ T + A
Sbjct: 143 TVEPGFGGQSFMHDMMGKVSFLRKKYKNLNIQVDGGLNIETTEISASH 190
>d1q6oa_ c.1.2.3 (A:) 3-keto-L-gulonate 6-phosphate decarboxylase
{Escherichia coli [TaxId: 562]}
Length = 213
Score = 84.9 bits (209), Expect = 2e-20
Identities = 21/224 (9%), Positives = 56/224 (25%), Gaps = 50/224 (22%)
Query: 12 ILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLR-NKIPKAFFETH 70
+ D + + A+ +D+++ + + G V+ L+ K
Sbjct: 5 QVALDNQTM-DSAYETTRLIAE--EVDIIEVGTILCVGEGVRAVRDLKALYPHKIVLADA 61
Query: 71 MMVQNPQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPMADAN 130
+ + +AN D T
Sbjct: 62 KIADAGKILSRMCFEANADWVTVICCA--------------------------------- 88
Query: 131 VDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIES--ADLVLIMTVEP 188
++ + KE V + + + ++ ++ +V + +
Sbjct: 89 ---------DINTAKGALDVAKEFNGDVQIELTGYWTWEQAQQWRDAGIGQVVYHRSRDA 139
Query: 189 GFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKC 232
G + + + +K L + V GG+ +
Sbjct: 140 QAAGVAWGEADITAIKRLS--DMGFKVTVTGGLALEDLPLFKGI 181
>d1o4ua1 c.1.17.1 (A:104-273) Quinolinic acid
phosphoribosyltransferase (Nicotinate-nucleotide
pyrophosphorylase, NadC), C-terminal domain {Thermotoga
maritima [TaxId: 2336]}
Length = 170
Score = 32.3 bits (73), Expect = 0.030
Identities = 14/90 (15%), Positives = 34/90 (37%), Gaps = 10/90 (11%)
Query: 194 KFMQDMMPKVKWLRENYP-TLNIEVDGGVGPNTIDECAKCLTGFGGQKFMQDMMP----- 247
K V+ +R+ P T IEV+ +++ + + + ++ P
Sbjct: 59 KMYGSAERAVQEVRKIIPFTTKIEVE----VENLEDALRAVEAGADIVMLDNLSPEEVKD 114
Query: 248 KVKWLRENYPTLNIEVDGGVGPNTIDECAK 277
+ +++ P + +EV GG+ +
Sbjct: 115 ISRRIKDINPNVIVEVSGGITEENVSLYDF 144
Score = 30.0 bits (67), Expect = 0.19
Identities = 12/116 (10%), Positives = 44/116 (37%), Gaps = 23/116 (19%)
Query: 121 DWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADL 180
+ M N H++ + + +++++ + K + V+ + + + + +
Sbjct: 49 GCV--MIKDN------HLKMYGSAERAVQEVR---KIIPFTTKIEVEVENLEDALRAVEA 97
Query: 181 ----VLIMTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKC 232
V++ + P +++ + +++ P + +EV GG+ +
Sbjct: 98 GADIVMLDNLSP--------EEVKDISRRIKDINPNVIVEVSGGITEENVSLYDFE 145
>d1tg7a5 c.1.8.14 (A:41-394) Beta-galactosidase LacA, N-terminal
domain {Penicillium sp. [TaxId: 5081]}
Length = 354
Score = 32.1 bits (72), Expect = 0.058
Identities = 13/74 (17%), Positives = 25/74 (33%), Gaps = 8/74 (10%)
Query: 93 FHVEPVDNVPQVIRQIKEAGMKVGQVLQDW--IEPMADANVDQYTFHVEPVDNVPQVIRQ 150
+ + + ++K G DW +E N Y+ E + ++
Sbjct: 30 YRLPVASLYIDIFEKVKALGFNCVSFYVDWALLEG----NPGHYSA--EGIFDLQPFFDA 83
Query: 151 IKEAGMKVGLAIKP 164
KEAG+ + P
Sbjct: 84 AKEAGIYLLARPGP 97
>d1x68a1 g.39.1.3 (A:8-36) Four and a half LIM domains protein 5,
FHL-5 {Human (Homo sapiens) [TaxId: 9606]}
Length = 29
Score = 24.8 bits (54), Expect = 1.6
Identities = 6/15 (40%), Positives = 10/15 (66%)
Query: 228 ECAKCLTGFGGQKFM 242
C+K ++G G KF+
Sbjct: 3 ACSKPISGLTGAKFI 17
>d1lbua1 a.20.1.1 (A:1-83) Zn2+ DD-carboxypeptidase, N-terminal
domain {Streptomyces albus G [TaxId: 1962]}
Length = 83
Score = 26.1 bits (57), Expect = 1.6
Identities = 13/78 (16%), Positives = 22/78 (28%), Gaps = 28/78 (35%)
Query: 201 PKVKWLRE-----NYPTLNIEVDGGVGPNTIDECAKCLTGFGGQKFMQDMMPKVKWLREN 255
V+ L+ + +DG GP T + + +G
Sbjct: 17 EAVRQLQIRVAGYPGTGAQLAIDGQFGPATKAAVQRFQSAYG------------------ 58
Query: 256 YPTLNIEVDGGVGPNTID 273
+ DG GP T +
Sbjct: 59 -----LAADGIAGPATFN 71
>d1x4la1 g.39.1.3 (A:8-36) Four and a half LIM domains protein 2,
FHL2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 29
Score = 24.8 bits (54), Expect = 1.7
Identities = 5/15 (33%), Positives = 9/15 (60%)
Query: 228 ECAKCLTGFGGQKFM 242
C ++G GG K++
Sbjct: 3 GCTNPISGLGGTKYI 17
>d1qapa1 c.1.17.1 (A:130-296) Quinolinic acid
phosphoribosyltransferase (Nicotinate-nucleotide
pyrophosphorylase, NadC), C-terminal domain {Salmonella
typhimurium [TaxId: 90371]}
Length = 167
Score = 26.9 bits (59), Expect = 2.0
Identities = 7/39 (17%), Positives = 15/39 (38%), Gaps = 2/39 (5%)
Query: 196 MQDMMPK--VKWLRENYPTLNIEVDGGVGPNTIDECAKC 232
+ + + ++ +EV G V T+ E A+
Sbjct: 105 LDNFNTDQMREAVKRVNGQARLEVSGNVTAETLREFAET 143
>d1kwga2 c.1.8.1 (A:1-393) A4 beta-galactosidase {Thermus
thermophilus [TaxId: 274]}
Length = 393
Score = 27.3 bits (59), Expect = 2.0
Identities = 32/191 (16%), Positives = 57/191 (29%), Gaps = 31/191 (16%)
Query: 75 NPQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMK---VGQVLQDWIEPMADANV 131
P+ W P + + R+++EAG+ +G+ +EP
Sbjct: 7 YPEHW-----------------PKERWKEDARRMREAGLSHVRIGEFAWALLEP------ 43
Query: 132 DQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIMTVEPGFG 191
+ +D + I + G+KV L TP + + V FG
Sbjct: 44 EPGRLEWGWLD---EAIATLAAEGLKVVLGTPTATPPKWLVDRYPEILPVDREGRRRRFG 100
Query: 192 GQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKCLTGFGGQKFMQDMMPKV-- 249
G++ P + TL E GG+ + + +
Sbjct: 101 GRRHYCFSSPVYREEARRIVTLLAERYGGLEAVAGFQTDNEYGCHDTVRCYCPRCQEAFR 160
Query: 250 KWLRENYPTLN 260
WL Y T+
Sbjct: 161 GWLEARYGTIE 171
>d1wx9a1 d.15.1.1 (A:8-80) Large proline-rich protein BAT3 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 73
Score = 25.2 bits (55), Expect = 3.2
Identities = 14/57 (24%), Positives = 21/57 (36%), Gaps = 10/57 (17%)
Query: 91 YTFHVEPVDNVPQVIRQIKEAGMKV---------GQVLQDWIEPMADANVDQYTFHV 138
TF V NV + I + G+VLQD + + + NV H+
Sbjct: 13 RTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDD-KKLQEYNVGGKVIHL 68
>d1qnra_ c.1.8.3 (A:) Beta-mannanase {Trichoderma reesei [TaxId:
51453]}
Length = 344
Score = 26.9 bits (58), Expect = 3.4
Identities = 14/101 (13%), Positives = 28/101 (27%), Gaps = 1/101 (0%)
Query: 74 QNPQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPMADANVDQ 133
QW ++ + H+ + + + A D+ + + ++D
Sbjct: 178 DVIVQWATSVSQYVKSLDSNHLVTLGDEGLGLSTGDGAYPYTYGEGTDFAKNVQIKSLDF 237
Query: 134 YTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEY 174
TFH+ P + P V EY
Sbjct: 238 GTFHLYPDSWGTNYTWGNGWIQTHAAACLAAGKPC-VFEEY 277
>d1hjsa_ c.1.8.3 (A:) Beta-1,4-galactanase {Thielavia
heterothallica, aka Myceliophthora thermophila [TaxId:
78579]}
Length = 332
Score = 26.0 bits (56), Expect = 5.1
Identities = 11/82 (13%), Positives = 24/82 (29%), Gaps = 14/82 (17%)
Query: 79 WIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPMADANVDQYTFHV 138
+ A V + + + G+ + + W+ P Y
Sbjct: 11 SVVVEERAGVSYKNTNGNAQP----LENILAANGVNTVR-QRVWVNPADG----NYNL-- 59
Query: 139 EPVDNVPQVIRQIKEAGMKVGL 160
D + ++ K AG+ V +
Sbjct: 60 ---DYNIAIAKRAKAAGLGVYI 78
>d2nr7a1 d.2.1.9 (A:1-192) Putative secretion activator PG0293
{Porphyromonas gingivalis [TaxId: 837]}
Length = 192
Score = 25.8 bits (56), Expect = 5.4
Identities = 9/55 (16%), Positives = 18/55 (32%), Gaps = 13/55 (23%)
Query: 178 ADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKC 232
A++++ G G Q ++ ++ DG VG T+
Sbjct: 88 ANILVDWVWGSGKYGIVIPQRIL-------------GVQADGIVGNKTLQAVNSA 129
>d1hf2a2 c.102.1.1 (A:1-99) Cell-division inhibitor MinC, N-terminal
domain {Thermotoga maritima [TaxId: 2336]}
Length = 99
Score = 24.9 bits (54), Expect = 5.5
Identities = 6/26 (23%), Positives = 17/26 (65%)
Query: 94 HVEPVDNVPQVIRQIKEAGMKVGQVL 119
H + ++P+++ ++ G++V Q+L
Sbjct: 52 HNKHSQDIPRIVSHLRNLGLEVSQIL 77
>d1qo2a_ c.1.2.1 (A:) Phosphoribosylformimino-5-aminoimidazole
carboxamide ribotite isomerase HisA {Thermotoga
maritima [TaxId: 2336]}
Length = 241
Score = 25.0 bits (53), Expect = 9.3
Identities = 3/58 (5%), Positives = 13/58 (22%)
Query: 29 DSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADA 86
+ G +H+ + + + K + ++ +
Sbjct: 41 EEGFTLIHVVDLSNAIENSGENLPVLEKLSEFAEHIQIGGGIRSLDYAEKLRKLGYRR 98
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.137 0.421
Gapped
Lambda K H
0.267 0.0490 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,089,315
Number of extensions: 51564
Number of successful extensions: 245
Number of sequences better than 10.0: 1
Number of HSP's gapped: 234
Number of HSP's successfully gapped: 39
Length of query: 277
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 193
Effective length of database: 1,254,276
Effective search space: 242075268
Effective search space used: 242075268
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.4 bits)