BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11601
(82 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3OVP|A Chain A, Crystal Structure Of Hrpe
pdb|3OVP|B Chain B, Crystal Structure Of Hrpe
pdb|3OVQ|A Chain A, Crytal Structure Of Hrpe And D-Ribulose-5-Phospate Complex
pdb|3OVQ|B Chain B, Crytal Structure Of Hrpe And D-Ribulose-5-Phospate Complex
pdb|3OVR|A Chain A, Crystal Structure Of Hrpe And D-Xylulose 5-Phosphate
Complex
pdb|3OVR|B Chain B, Crystal Structure Of Hrpe And D-Xylulose 5-Phosphate
Complex
Length = 228
Score = 109 bits (273), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 48/75 (64%), Positives = 62/75 (82%)
Query: 1 MTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAV 60
MTVEPGFGGQKFM+DMMPKV WLR +P+L+IEVDGGVGP+T+ +CA+AGAN IVSG+A+
Sbjct: 141 MTVEPGFGGQKFMEDMMPKVHWLRTQFPSLDIEVDGGVGPDTVHKCAEAGANMIVSGSAI 200
Query: 61 INCPDRIQAISTLKS 75
+ D I+ L++
Sbjct: 201 MRSEDPRSVINLLRN 215
>pdb|1H1Y|A Chain A, The Structure Of The Cytosolic D-Ribulose-5-Phosphate 3-
Epimerase From Rice Complexed With Sulfate
pdb|1H1Y|B Chain B, The Structure Of The Cytosolic D-Ribulose-5-Phosphate 3-
Epimerase From Rice Complexed With Sulfate
pdb|1H1Z|A Chain A, The Structure Of The Cytosolic D-Ribulose-5-Phosphate 3-
Epimerase From Rice Complexed With Sulfate And Zinc
pdb|1H1Z|B Chain B, The Structure Of The Cytosolic D-Ribulose-5-Phosphate 3-
Epimerase From Rice Complexed With Sulfate And Zinc
Length = 228
Score = 100 bits (248), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 46/78 (58%), Positives = 61/78 (78%)
Query: 1 MTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAV 60
MTVEPGFGGQKFM +MM KV+ LR+ YP+L+IEVDGG+GP+TID A AGAN IV+G+++
Sbjct: 145 MTVEPGFGGQKFMPEMMEKVRALRKKYPSLDIEVDGGLGPSTIDVAASAGANCIVAGSSI 204
Query: 61 INCPDRIQAISTLKSSVQ 78
+ + IS L+ SV+
Sbjct: 205 FGAAEPGEVISALRKSVE 222
>pdb|3QC3|A Chain A, Crystal Structure Of A D-Ribulose-5-Phosphate-3-Epimerase
(Np_954699) From Homo Sapiens At 2.20 A Resolution
pdb|3QC3|B Chain B, Crystal Structure Of A D-Ribulose-5-Phosphate-3-Epimerase
(Np_954699) From Homo Sapiens At 2.20 A Resolution
Length = 225
Score = 98.6 bits (244), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 44/74 (59%), Positives = 57/74 (77%)
Query: 2 TVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVI 61
TVEPGFGGQKF +D PKV WLR +P+L+IEVDGGVGP+T+ +CA+AGAN IVSG+A+
Sbjct: 143 TVEPGFGGQKFXEDXXPKVHWLRTQFPSLDIEVDGGVGPDTVHKCAEAGANXIVSGSAIX 202
Query: 62 NCPDRIQAISTLKS 75
D I+ L++
Sbjct: 203 RSEDPRSVINLLRN 216
>pdb|1TQX|A Chain A, Crystal Structure Of Pfal009167 A Putative D-Ribulose
5-Phosphate 3- Epimerase From P.Falciparum
pdb|1TQX|B Chain B, Crystal Structure Of Pfal009167 A Putative D-Ribulose
5-Phosphate 3- Epimerase From P.Falciparum
Length = 227
Score = 96.3 bits (238), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 46/82 (56%), Positives = 57/82 (69%)
Query: 1 MTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAV 60
MTVEPGFGGQ FM DMM KV +LR+ Y LNI+VDGG+ T + A GAN IV+GT++
Sbjct: 145 MTVEPGFGGQSFMHDMMGKVSFLRKKYKNLNIQVDGGLNIETTEISASHGANIIVAGTSI 204
Query: 61 INCPDRIQAISTLKSSVQKYLS 82
N D I T++ SVQKYL+
Sbjct: 205 FNAEDPKYVIDTMRVSVQKYLN 226
>pdb|1TQJ|A Chain A, Crystal Structure Of D-Ribulose 5-Phosphate 3-Epimerase
From Synechocystis To 1.6 Angstrom Resolution
pdb|1TQJ|B Chain B, Crystal Structure Of D-Ribulose 5-Phosphate 3-Epimerase
From Synechocystis To 1.6 Angstrom Resolution
pdb|1TQJ|C Chain C, Crystal Structure Of D-Ribulose 5-Phosphate 3-Epimerase
From Synechocystis To 1.6 Angstrom Resolution
pdb|1TQJ|D Chain D, Crystal Structure Of D-Ribulose 5-Phosphate 3-Epimerase
From Synechocystis To 1.6 Angstrom Resolution
pdb|1TQJ|E Chain E, Crystal Structure Of D-Ribulose 5-Phosphate 3-Epimerase
From Synechocystis To 1.6 Angstrom Resolution
pdb|1TQJ|F Chain F, Crystal Structure Of D-Ribulose 5-Phosphate 3-Epimerase
From Synechocystis To 1.6 Angstrom Resolution
Length = 230
Score = 69.7 bits (169), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 57/80 (71%), Gaps = 4/80 (5%)
Query: 1 MTVEPGFGGQKFMQDMMPKVKWLRE--NYPTLN--IEVDGGVGPNTIDECAKAGANWIVS 56
M+V PGFGGQ F+ +++PK++ LR+ + L+ IEVDGG+ PN + +AGAN IV+
Sbjct: 141 MSVNPGFGGQSFIPEVLPKIRALRQMCDERGLDPWIEVDGGLKPNNTWQVLEAGANAIVA 200
Query: 57 GTAVINCPDRIQAISTLKSS 76
G+AV N P+ +AI+ +++S
Sbjct: 201 GSAVFNAPNYAEAIAGVRNS 220
>pdb|2FLI|A Chain A, The Crystal Structure Of D-Ribulose 5-Phosphate
3-Epimerase From Streptococus Pyogenes Complexed With
D-Xylitol 5- Phosphate
pdb|2FLI|B Chain B, The Crystal Structure Of D-Ribulose 5-Phosphate
3-Epimerase From Streptococus Pyogenes Complexed With
D-Xylitol 5- Phosphate
pdb|2FLI|C Chain C, The Crystal Structure Of D-Ribulose 5-Phosphate
3-Epimerase From Streptococus Pyogenes Complexed With
D-Xylitol 5- Phosphate
pdb|2FLI|D Chain D, The Crystal Structure Of D-Ribulose 5-Phosphate
3-Epimerase From Streptococus Pyogenes Complexed With
D-Xylitol 5- Phosphate
pdb|2FLI|E Chain E, The Crystal Structure Of D-Ribulose 5-Phosphate
3-Epimerase From Streptococus Pyogenes Complexed With
D-Xylitol 5- Phosphate
pdb|2FLI|F Chain F, The Crystal Structure Of D-Ribulose 5-Phosphate
3-Epimerase From Streptococus Pyogenes Complexed With
D-Xylitol 5- Phosphate
pdb|2FLI|G Chain G, The Crystal Structure Of D-Ribulose 5-Phosphate
3-Epimerase From Streptococus Pyogenes Complexed With
D-Xylitol 5- Phosphate
pdb|2FLI|H Chain H, The Crystal Structure Of D-Ribulose 5-Phosphate
3-Epimerase From Streptococus Pyogenes Complexed With
D-Xylitol 5- Phosphate
pdb|2FLI|I Chain I, The Crystal Structure Of D-Ribulose 5-Phosphate
3-Epimerase From Streptococus Pyogenes Complexed With
D-Xylitol 5- Phosphate
pdb|2FLI|J Chain J, The Crystal Structure Of D-Ribulose 5-Phosphate
3-Epimerase From Streptococus Pyogenes Complexed With
D-Xylitol 5- Phosphate
pdb|2FLI|K Chain K, The Crystal Structure Of D-Ribulose 5-Phosphate
3-Epimerase From Streptococus Pyogenes Complexed With
D-Xylitol 5- Phosphate
pdb|2FLI|L Chain L, The Crystal Structure Of D-Ribulose 5-Phosphate
3-Epimerase From Streptococus Pyogenes Complexed With
D-Xylitol 5- Phosphate
Length = 220
Score = 68.6 bits (166), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 49/81 (60%), Gaps = 4/81 (4%)
Query: 1 MTVEPGFGGQKFMQDMMPKV----KWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVS 56
MTV PGFGGQ F+ + + KV KW E + +IEVDGGV TI C +AGAN V+
Sbjct: 138 MTVNPGFGGQAFIPECLEKVATVAKWRDEKGLSFDIEVDGGVDNKTIRACYEAGANVFVA 197
Query: 57 GTAVINCPDRIQAISTLKSSV 77
G+ + D + + TL++++
Sbjct: 198 GSYLFKASDLVSQVQTLRTAL 218
>pdb|1RPX|A Chain A, D-Ribulose-5-Phosphate 3-Epimerase From Solanum Tuberosum
Chloroplasts
pdb|1RPX|B Chain B, D-Ribulose-5-Phosphate 3-Epimerase From Solanum Tuberosum
Chloroplasts
pdb|1RPX|C Chain C, D-Ribulose-5-Phosphate 3-Epimerase From Solanum Tuberosum
Chloroplasts
Length = 230
Score = 66.2 bits (160), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 37/80 (46%), Positives = 51/80 (63%), Gaps = 4/80 (5%)
Query: 1 MTVEPGFGGQKFMQDMMPKVKWLRE--NYPTLN--IEVDGGVGPNTIDECAKAGANWIVS 56
M+V PGFGGQ F++ + K+ LR+ LN IEVDGGVGP + +AGAN +V+
Sbjct: 147 MSVNPGFGGQSFIESQVKKISDLRKICAERGLNPWIEVDGGVGPKNAYKVIEAGANALVA 206
Query: 57 GTAVINCPDRIQAISTLKSS 76
G+AV PD +AI +K+S
Sbjct: 207 GSAVFGAPDYAEAIKGIKTS 226
>pdb|3INP|A Chain A, 2.05 Angstrom Resolution Crystal Structure Of
D-Ribulose-Phosphate 3- Epimerase From Francisella
Tularensis
Length = 246
Score = 63.5 bits (153), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 45/83 (54%), Gaps = 4/83 (4%)
Query: 1 MTVEPGFGGQKFMQDMMPKVK----WLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVS 56
M+V PGFGGQKF+ M+ K K W+ + +E+DGGV P I E A G N V+
Sbjct: 163 MSVNPGFGGQKFIPAMLDKAKEISKWISSTDRDILLEIDGGVNPYNIAEIAVCGVNAFVA 222
Query: 57 GTAVINCPDRIQAISTLKSSVQK 79
G+A+ N Q I ++ + K
Sbjct: 223 GSAIFNSDSYKQTIDKMRDELNK 245
>pdb|3CT7|A Chain A, Crystal Structure Of D-Allulose 6-Phosphate 3-Epimerase
From Escherichia Coli K-12
pdb|3CT7|B Chain B, Crystal Structure Of D-Allulose 6-Phosphate 3-Epimerase
From Escherichia Coli K-12
pdb|3CT7|C Chain C, Crystal Structure Of D-Allulose 6-Phosphate 3-Epimerase
From Escherichia Coli K-12
pdb|3CT7|D Chain D, Crystal Structure Of D-Allulose 6-Phosphate 3-Epimerase
From Escherichia Coli K-12
pdb|3CT7|E Chain E, Crystal Structure Of D-Allulose 6-Phosphate 3-Epimerase
From Escherichia Coli K-12
pdb|3CT7|F Chain F, Crystal Structure Of D-Allulose 6-Phosphate 3-Epimerase
From Escherichia Coli K-12
pdb|3CTL|A Chain A, Crystal Structure Of D-Allulose 6-Phosphate 3-Epimerase
From Escherichia Coli K12 Complexed With D-Glucitol 6-
Phosphate And Magnesium
pdb|3CTL|B Chain B, Crystal Structure Of D-Allulose 6-Phosphate 3-Epimerase
From Escherichia Coli K12 Complexed With D-Glucitol 6-
Phosphate And Magnesium
pdb|3CTL|C Chain C, Crystal Structure Of D-Allulose 6-Phosphate 3-Epimerase
From Escherichia Coli K12 Complexed With D-Glucitol 6-
Phosphate And Magnesium
pdb|3CTL|D Chain D, Crystal Structure Of D-Allulose 6-Phosphate 3-Epimerase
From Escherichia Coli K12 Complexed With D-Glucitol 6-
Phosphate And Magnesium
pdb|3CTL|E Chain E, Crystal Structure Of D-Allulose 6-Phosphate 3-Epimerase
From Escherichia Coli K12 Complexed With D-Glucitol 6-
Phosphate And Magnesium
pdb|3CTL|F Chain F, Crystal Structure Of D-Allulose 6-Phosphate 3-Epimerase
From Escherichia Coli K12 Complexed With D-Glucitol 6-
Phosphate And Magnesium
Length = 231
Score = 43.9 bits (102), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
Query: 1 MTVEPGFGGQKFMQDMMPKV----KWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVS 56
MTV+PGF GQ F+ +M+ K+ W IEVDG T ++ AGA+ +
Sbjct: 135 MTVDPGFAGQPFIPEMLDKLAELKAWREREGLEYEIEVDGSCNQATYEKLMAAGADVFIV 194
Query: 57 GTA 59
GT+
Sbjct: 195 GTS 197
>pdb|3F4W|A Chain A, The 1.65a Crystal Structure Of 3-Hexulose-6-Phosphate
Synthase From Salmonella Typhimurium
pdb|3F4W|B Chain B, The 1.65a Crystal Structure Of 3-Hexulose-6-Phosphate
Synthase From Salmonella Typhimurium
Length = 211
Score = 28.9 bits (63), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Query: 8 GGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINCPD 65
G+K + D++ +K R+ I V GG+ T+ + A G + ++ G+A+ + D
Sbjct: 142 AGRKPIDDLITMLKVRRKA----RIAVAGGISSQTVKDYALLGPDVVIVGSAITHAAD 195
>pdb|1EP1|A Chain A, Crystal Structure Of Lactococcus Lactis Dihydroorotate
Dehydrogenase B
pdb|1EP2|A Chain A, Crystal Structure Of Lactococcus Lactis Dihydroorotate
Dehydrogenase B Complexed With Orotate
pdb|1EP3|A Chain A, Crystal Structure Of Lactococcus Lactis Dihydroorotate
Dehydrogenase B. Data Collected Under Cryogenic
Conditions
Length = 311
Score = 28.5 bits (62), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Query: 16 MMPKVKWLRENYPTLNI--EVDGGVGPNTIDECAKAGANWIVSGTAV-INCPD 65
M K+ WL EN+P L I V G + + CAK G V + I+CP+
Sbjct: 85 MTEKLPWLNENFPELPIIANVAGSEEADYVAVCAKIGDAANVKAIELNISCPN 137
>pdb|2CZ5|A Chain A, Crystal Structure Of Orotidine 5'-Phosphate Decarboxylase
From Pyrococcus Horikoshii Ot3
pdb|2CZ5|B Chain B, Crystal Structure Of Orotidine 5'-Phosphate Decarboxylase
From Pyrococcus Horikoshii Ot3
pdb|2CZD|A Chain A, Crystal Structure Of Orotidine 5'-Phosphate Decarboxylase
From Pyrococcus Horikoshii Ot3 At 1.6 A Resolution
pdb|2CZD|B Chain B, Crystal Structure Of Orotidine 5'-Phosphate Decarboxylase
From Pyrococcus Horikoshii Ot3 At 1.6 A Resolution
pdb|2CZE|A Chain A, Crystal Structure Of Orotidine 5'-Phosphate Decarboxylase
From Pyrococcus Horikoshii Ot3 Complexed With Ump
pdb|2CZE|B Chain B, Crystal Structure Of Orotidine 5'-Phosphate Decarboxylase
From Pyrococcus Horikoshii Ot3 Complexed With Ump
pdb|2CZF|A Chain A, Crystal Structure Of Orotidine 5'-Phosphate Decarboxylase
From Pyrococcus Horikoshii Ot3 Complexed With Xmp
pdb|2CZF|B Chain B, Crystal Structure Of Orotidine 5'-Phosphate Decarboxylase
From Pyrococcus Horikoshii Ot3 Complexed With Xmp
Length = 208
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 10/34 (29%), Positives = 20/34 (58%)
Query: 45 ECAKAGANWIVSGTAVINCPDRIQAISTLKSSVQ 78
+ KAGA++I+ G A+ N P+ +A + ++
Sbjct: 173 DAVKAGADYIIVGRAIYNAPNPREAAKAIYDEIR 206
>pdb|3USB|A Chain A, Crystal Structure Of Bacillus Anthracis Inosine
Monophosphate Dehydrogenase In The Complex With Imp
pdb|3USB|B Chain B, Crystal Structure Of Bacillus Anthracis Inosine
Monophosphate Dehydrogenase In The Complex With Imp
Length = 511
Score = 26.6 bits (57), Expect = 3.6, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 21/44 (47%)
Query: 14 QDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSG 57
Q ++ KVK +R YP+LNI +AGAN + G
Sbjct: 282 QGVIDKVKEVRAKYPSLNIIAGNVATAEATKALIEAGANVVKVG 325
>pdb|3TSB|A Chain A, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase From Bacillus Anthracis Str. Ames
pdb|3TSB|B Chain B, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase From Bacillus Anthracis Str. Ames
pdb|3TSD|A Chain A, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase From Bacillus Anthracis Str. Ames
Complexed With Xmp
pdb|3TSD|B Chain B, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase From Bacillus Anthracis Str. Ames
Complexed With Xmp
Length = 511
Score = 26.6 bits (57), Expect = 3.8, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 21/44 (47%)
Query: 14 QDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSG 57
Q ++ KVK +R YP+LNI +AGAN + G
Sbjct: 282 QGVIDKVKEVRAKYPSLNIIAGNVATAEATKALIEAGANVVKVG 325
>pdb|3S3T|A Chain A, Universal Stress Protein Uspa From Lactobacillus Plantarum
pdb|3S3T|B Chain B, Universal Stress Protein Uspa From Lactobacillus Plantarum
pdb|3S3T|C Chain C, Universal Stress Protein Uspa From Lactobacillus Plantarum
pdb|3S3T|D Chain D, Universal Stress Protein Uspa From Lactobacillus Plantarum
pdb|3S3T|E Chain E, Universal Stress Protein Uspa From Lactobacillus Plantarum
pdb|3S3T|F Chain F, Universal Stress Protein Uspa From Lactobacillus Plantarum
pdb|3S3T|G Chain G, Universal Stress Protein Uspa From Lactobacillus Plantarum
pdb|3S3T|H Chain H, Universal Stress Protein Uspa From Lactobacillus Plantarum
Length = 146
Score = 25.4 bits (54), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Query: 28 PTLNIEVDGGVGPNTIDECAKAGA--NWIVSGTAVINCPDRIQAIST 72
P L E+ G+ +TI++ AK + IV G N P R+ ST
Sbjct: 84 PNLKTEISYGIPKHTIEDYAKQHPEIDLIVLGATGTNSPHRVAVGST 130
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.134 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,587,465
Number of Sequences: 62578
Number of extensions: 91135
Number of successful extensions: 304
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 277
Number of HSP's gapped (non-prelim): 25
length of query: 82
length of database: 14,973,337
effective HSP length: 51
effective length of query: 31
effective length of database: 11,781,859
effective search space: 365237629
effective search space used: 365237629
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)