BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11601
(82 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8VEE0|RPE_MOUSE Ribulose-phosphate 3-epimerase OS=Mus musculus GN=Rpe PE=2 SV=1
Length = 228
Score = 110 bits (275), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 49/75 (65%), Positives = 62/75 (82%)
Query: 1 MTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAV 60
MTVEPGFGGQKFM+DMMPKV WLR +PTL+IEVDGGVGP+T+ +CA+AGAN IVSG+A+
Sbjct: 141 MTVEPGFGGQKFMEDMMPKVHWLRTQFPTLDIEVDGGVGPDTVQKCAEAGANMIVSGSAI 200
Query: 61 INCPDRIQAISTLKS 75
+ D I+ L++
Sbjct: 201 MRSDDPRAVINLLRN 215
>sp|Q96AT9|RPE_HUMAN Ribulose-phosphate 3-epimerase OS=Homo sapiens GN=RPE PE=1 SV=1
Length = 228
Score = 109 bits (273), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 48/75 (64%), Positives = 62/75 (82%)
Query: 1 MTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAV 60
MTVEPGFGGQKFM+DMMPKV WLR +P+L+IEVDGGVGP+T+ +CA+AGAN IVSG+A+
Sbjct: 141 MTVEPGFGGQKFMEDMMPKVHWLRTQFPSLDIEVDGGVGPDTVHKCAEAGANMIVSGSAI 200
Query: 61 INCPDRIQAISTLKS 75
+ D I+ L++
Sbjct: 201 MRSEDPRSVINLLRN 215
>sp|Q5R5Y2|RPE_PONAB Ribulose-phosphate 3-epimerase OS=Pongo abelii GN=RPE PE=2 SV=1
Length = 228
Score = 109 bits (273), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 48/75 (64%), Positives = 62/75 (82%)
Query: 1 MTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAV 60
MTVEPGFGGQKFM+DMMPKV WLR +P+L+IEVDGGVGP+T+ +CA+AGAN IVSG+A+
Sbjct: 141 MTVEPGFGGQKFMEDMMPKVHWLRTQFPSLDIEVDGGVGPDTVHKCAEAGANMIVSGSAI 200
Query: 61 INCPDRIQAISTLKS 75
+ D I+ L++
Sbjct: 201 MRSEDPRSVINLLRN 215
>sp|P46969|RPE_YEAST Ribulose-phosphate 3-epimerase OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RPE1 PE=1 SV=1
Length = 238
Score = 102 bits (254), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 50/81 (61%), Positives = 59/81 (72%)
Query: 1 MTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAV 60
MTVEPGFGGQKFM+DMMPKV+ LR +P LNI+VDGG+G TI + AKAGAN IV+GT+V
Sbjct: 151 MTVEPGFGGQKFMEDMMPKVETLRAKFPHLNIQVDGGLGKETIPKAAKAGANVIVAGTSV 210
Query: 61 INCPDRIQAISTLKSSVQKYL 81
D IS +K V K L
Sbjct: 211 FTAADPHDVISFMKEEVSKEL 231
>sp|Q6FL81|RPE_CANGA Ribulose-phosphate 3-epimerase OS=Candida glabrata (strain ATCC
2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65)
GN=RPE1 PE=3 SV=1
Length = 246
Score = 100 bits (250), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 49/81 (60%), Positives = 59/81 (72%)
Query: 1 MTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAV 60
MTVEPGFGGQKFM DMMPKV+ LR +P +NI+VDGG+G TI AKAGAN IV+GT+V
Sbjct: 154 MTVEPGFGGQKFMPDMMPKVEALRTKFPHMNIQVDGGLGKETIGVAAKAGANVIVAGTSV 213
Query: 61 INCPDRIQAISTLKSSVQKYL 81
D + IS +K V+K L
Sbjct: 214 FTASDPHEVISFMKEEVRKEL 234
>sp|Q755M2|RPE_ASHGO Ribulose-phosphate 3-epimerase OS=Ashbya gossypii (strain ATCC
10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=RPE1
PE=3 SV=1
Length = 239
Score = 100 bits (249), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 49/81 (60%), Positives = 59/81 (72%)
Query: 1 MTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAV 60
MTVEPGFGGQKFM DMMPKV LRE +P L+I+VDGG+G TI AKAGAN IV+GT+V
Sbjct: 149 MTVEPGFGGQKFMPDMMPKVAALREKFPQLDIQVDGGLGKETIPHAAKAGANVIVAGTSV 208
Query: 61 INCPDRIQAISTLKSSVQKYL 81
D+ IS +K +V+ L
Sbjct: 209 FAAADQKDVISYMKDNVRDEL 229
>sp|Q9SE42|RPE1_ORYSJ Ribulose-phosphate 3-epimerase, cytoplasmic isoform OS=Oryza sativa
subsp. japonica GN=Os09g0505700 PE=1 SV=1
Length = 228
Score = 100 bits (248), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 46/78 (58%), Positives = 61/78 (78%)
Query: 1 MTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAV 60
MTVEPGFGGQKFM +MM KV+ LR+ YP+L+IEVDGG+GP+TID A AGAN IV+G+++
Sbjct: 145 MTVEPGFGGQKFMPEMMEKVRALRKKYPSLDIEVDGGLGPSTIDVAASAGANCIVAGSSI 204
Query: 61 INCPDRIQAISTLKSSVQ 78
+ + IS L+ SV+
Sbjct: 205 FGAAEPGEVISALRKSVE 222
>sp|O14105|RPE_SCHPO Ribulose-phosphate 3-epimerase OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=SPAC31G5.05c PE=3 SV=1
Length = 228
Score = 93.2 bits (230), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 45/79 (56%), Positives = 58/79 (73%)
Query: 1 MTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAV 60
MTVEPG GGQ FM + +PKV++LR+ YPTLN+EVDGG+ T+D A AGAN IV+GTAV
Sbjct: 141 MTVEPGKGGQSFMPECLPKVEFLRKKYPTLNVEVDGGLSLKTVDAAADAGANVIVAGTAV 200
Query: 61 INCPDRIQAISTLKSSVQK 79
+ + IS L++SV K
Sbjct: 201 FHAQSPEEVISGLRNSVMK 219
>sp|Q9L0Z5|RPE_STRCO Ribulose-phosphate 3-epimerase OS=Streptomyces coelicolor (strain
ATCC BAA-471 / A3(2) / M145) GN=rpe PE=3 SV=1
Length = 228
Score = 72.4 bits (176), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 36/79 (45%), Positives = 51/79 (64%), Gaps = 4/79 (5%)
Query: 1 MTVEPGFGGQKFMQDMMPKVKWLRE----NYPTLNIEVDGGVGPNTIDECAKAGANWIVS 56
MTVEPGFGGQ F+ M+PK++ RE + L ++VDGGV TI+ CA AGA+ V+
Sbjct: 135 MTVEPGFGGQAFLDIMLPKIRRTRELIKKHGLELWLQVDGGVSAATIERCADAGADVFVA 194
Query: 57 GTAVINCPDRIQAISTLKS 75
G+AV D +A+ L++
Sbjct: 195 GSAVYGASDPAEAVRALRT 213
>sp|P74061|RPE_SYNY3 Ribulose-phosphate 3-epimerase OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=rpe PE=1 SV=3
Length = 230
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 57/80 (71%), Gaps = 4/80 (5%)
Query: 1 MTVEPGFGGQKFMQDMMPKVKWLRE--NYPTLN--IEVDGGVGPNTIDECAKAGANWIVS 56
M+V PGFGGQ F+ +++PK++ LR+ + L+ IEVDGG+ PN + +AGAN IV+
Sbjct: 141 MSVNPGFGGQSFIPEVLPKIRALRQMCDERGLDPWIEVDGGLKPNNTWQVLEAGANAIVA 200
Query: 57 GTAVINCPDRIQAISTLKSS 76
G+AV N P+ +AI+ +++S
Sbjct: 201 GSAVFNAPNYAEAIAGVRNS 220
>sp|O34557|RPE_BACSU Ribulose-phosphate 3-epimerase OS=Bacillus subtilis (strain 168)
GN=rpe PE=3 SV=1
Length = 217
Score = 69.3 bits (168), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 37/81 (45%), Positives = 51/81 (62%), Gaps = 5/81 (6%)
Query: 1 MTVEPGFGGQKFMQDMMPKVKWLR-----ENYPTLNIEVDGGVGPNTIDECAKAGANWIV 55
MTV PGFGGQKF+ ++PK+K ++ + L IEVDGGV T +AGAN +V
Sbjct: 136 MTVNPGFGGQKFIHSVLPKIKEVKRMADEKGKKDLLIEVDGGVNKETAPLVIEAGANLLV 195
Query: 56 SGTAVINCPDRIQAISTLKSS 76
+G+AV DR +AIS ++ S
Sbjct: 196 AGSAVYGQSDRKKAISEIRGS 216
>sp|Q9ZTP5|RPE_ORYSJ Ribulose-phosphate 3-epimerase, chloroplastic OS=Oryza sativa
subsp. japonica GN=RPE PE=1 SV=2
Length = 274
Score = 67.4 bits (163), Expect = 2e-11, Method: Composition-based stats.
Identities = 37/80 (46%), Positives = 49/80 (61%), Gaps = 4/80 (5%)
Query: 1 MTVEPGFGGQKFMQDMMPKVKWLR----ENYPTLNIEVDGGVGPNTIDECAKAGANWIVS 56
M+V PGFGGQ F++ + K+ LR E IEVDGGVGP + +AGAN IV+
Sbjct: 187 MSVNPGFGGQSFIESQVKKIAELRRLCAEKGVNPWIEVDGGVGPKNAYKVIEAGANAIVA 246
Query: 57 GTAVINCPDRIQAISTLKSS 76
G+AV PD +AI +K+S
Sbjct: 247 GSAVFGAPDYAEAIKGIKTS 266
>sp|Q43843|RPE_SOLTU Ribulose-phosphate 3-epimerase, chloroplastic (Fragment) OS=Solanum
tuberosum PE=1 SV=1
Length = 280
Score = 65.9 bits (159), Expect = 8e-11, Method: Composition-based stats.
Identities = 37/80 (46%), Positives = 51/80 (63%), Gaps = 4/80 (5%)
Query: 1 MTVEPGFGGQKFMQDMMPKVKWLRE--NYPTLN--IEVDGGVGPNTIDECAKAGANWIVS 56
M+V PGFGGQ F++ + K+ LR+ LN IEVDGGVGP + +AGAN +V+
Sbjct: 193 MSVNPGFGGQSFIESQVKKISDLRKICAERGLNPWIEVDGGVGPKNAYKVIEAGANALVA 252
Query: 57 GTAVINCPDRIQAISTLKSS 76
G+AV PD +AI +K+S
Sbjct: 253 GSAVFGAPDYAEAIKGIKTS 272
>sp|P0AG10|RPE_SHIFL Ribulose-phosphate 3-epimerase OS=Shigella flexneri GN=rpe PE=3
SV=1
Length = 225
Score = 65.5 bits (158), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 51/83 (61%), Gaps = 4/83 (4%)
Query: 1 MTVEPGFGGQKFMQDMMPKVKWLR----ENYPTLNIEVDGGVGPNTIDECAKAGANWIVS 56
M+V PGFGGQ F+ + K++ +R E+ + +EVDGGV N I E A AGA+ V+
Sbjct: 139 MSVNPGFGGQSFIPQTLDKLREVRRRIDESGFDIRLEVDGGVKVNNIGEIAAAGADMFVA 198
Query: 57 GTAVINCPDRIQAISTLKSSVQK 79
G+A+ + PD + I ++S + K
Sbjct: 199 GSAIFDQPDYKKVIDEMRSELAK 221
>sp|P0AG07|RPE_ECOLI Ribulose-phosphate 3-epimerase OS=Escherichia coli (strain K12)
GN=rpe PE=1 SV=1
Length = 225
Score = 65.5 bits (158), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 51/83 (61%), Gaps = 4/83 (4%)
Query: 1 MTVEPGFGGQKFMQDMMPKVKWLR----ENYPTLNIEVDGGVGPNTIDECAKAGANWIVS 56
M+V PGFGGQ F+ + K++ +R E+ + +EVDGGV N I E A AGA+ V+
Sbjct: 139 MSVNPGFGGQSFIPQTLDKLREVRRRIDESGFDIRLEVDGGVKVNNIGEIAAAGADMFVA 198
Query: 57 GTAVINCPDRIQAISTLKSSVQK 79
G+A+ + PD + I ++S + K
Sbjct: 199 GSAIFDQPDYKKVIDEMRSELAK 221
>sp|P0AG08|RPE_ECOL6 Ribulose-phosphate 3-epimerase OS=Escherichia coli O6:H1 (strain
CFT073 / ATCC 700928 / UPEC) GN=rpe PE=3 SV=1
Length = 225
Score = 65.5 bits (158), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 51/83 (61%), Gaps = 4/83 (4%)
Query: 1 MTVEPGFGGQKFMQDMMPKVKWLR----ENYPTLNIEVDGGVGPNTIDECAKAGANWIVS 56
M+V PGFGGQ F+ + K++ +R E+ + +EVDGGV N I E A AGA+ V+
Sbjct: 139 MSVNPGFGGQSFIPQTLDKLREVRRRIDESGFDIRLEVDGGVKVNNIGEIAAAGADMFVA 198
Query: 57 GTAVINCPDRIQAISTLKSSVQK 79
G+A+ + PD + I ++S + K
Sbjct: 199 GSAIFDQPDYKKVIDEMRSELAK 221
>sp|P0AG09|RPE_ECO57 Ribulose-phosphate 3-epimerase OS=Escherichia coli O157:H7 GN=rpe
PE=3 SV=1
Length = 225
Score = 65.5 bits (158), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 51/83 (61%), Gaps = 4/83 (4%)
Query: 1 MTVEPGFGGQKFMQDMMPKVKWLR----ENYPTLNIEVDGGVGPNTIDECAKAGANWIVS 56
M+V PGFGGQ F+ + K++ +R E+ + +EVDGGV N I E A AGA+ V+
Sbjct: 139 MSVNPGFGGQSFIPQTLDKLREVRRRIDESGFDIRLEVDGGVKVNNIGEIAAAGADMFVA 198
Query: 57 GTAVINCPDRIQAISTLKSSVQK 79
G+A+ + PD + I ++S + K
Sbjct: 199 GSAIFDQPDYKKVIDEMRSELAK 221
>sp|P56188|RPE_HELPY Ribulose-phosphate 3-epimerase OS=Helicobacter pylori (strain ATCC
700392 / 26695) GN=rpe PE=3 SV=1
Length = 217
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 49/82 (59%), Gaps = 4/82 (4%)
Query: 1 MTVEPGFGGQKFMQDMMPK---VKWLRENY-PTLNIEVDGGVGPNTIDECAKAGANWIVS 56
M+V PGFGGQKF+ ++ K VK L + Y P+ +EVDGGV I E +AG + +VS
Sbjct: 133 MSVNPGFGGQKFLDLVLEKCLKVKELIKRYNPSCLLEVDGGVNDKNIFELQQAGVDVVVS 192
Query: 57 GTAVINCPDRIQAISTLKSSVQ 78
G+ + DR AI L++ Q
Sbjct: 193 GSYIFKSKDRKLAIEGLQNVRQ 214
>sp|Q9ZJ75|RPE_HELPJ Ribulose-phosphate 3-epimerase OS=Helicobacter pylori (strain J99)
GN=rpe PE=3 SV=1
Length = 217
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 49/82 (59%), Gaps = 4/82 (4%)
Query: 1 MTVEPGFGGQKFMQDMMPK---VKWLRENY-PTLNIEVDGGVGPNTIDECAKAGANWIVS 56
M+V PGFGGQKF+ ++ K VK L + Y P+ +EVDGGV I E +AG + +VS
Sbjct: 133 MSVNPGFGGQKFLDLVLEKCLKVKELIKRYNPSCLLEVDGGVNDKNIFELQQAGVDVVVS 192
Query: 57 GTAVINCPDRIQAISTLKSSVQ 78
G+ + DR AI L++ Q
Sbjct: 193 GSYIFESKDRKLAIEGLQNVRQ 214
>sp|P44756|RPE_HAEIN Ribulose-phosphate 3-epimerase OS=Haemophilus influenzae (strain
ATCC 51907 / DSM 11121 / KW20 / Rd) GN=rpe PE=3 SV=1
Length = 224
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 48/81 (59%), Gaps = 4/81 (4%)
Query: 1 MTVEPGFGGQKFMQDMMPKVKWLR----ENYPTLNIEVDGGVGPNTIDECAKAGANWIVS 56
M+V PGFGGQ F+ + K++ R E+ + +EVDGGV + I E A AGA+ V+
Sbjct: 139 MSVNPGFGGQSFIPATLKKLQQARKIIDESGYDIRLEVDGGVKVDNIAEIAAAGADMFVA 198
Query: 57 GTAVINCPDRIQAISTLKSSV 77
G+A+ PD Q I +++ +
Sbjct: 199 GSAIFGKPDYKQVIDQIRTQL 219
>sp|P65760|RPE_MYCTU Ribulose-phosphate 3-epimerase OS=Mycobacterium tuberculosis GN=rpe
PE=3 SV=1
Length = 229
Score = 59.7 bits (143), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 47/64 (73%), Gaps = 4/64 (6%)
Query: 1 MTVEPGFGGQKFMQDMMPKVKWLRENYP----TLNIEVDGGVGPNTIDECAKAGANWIVS 56
M+VEPGFGGQ+F+ +++ KV+ +R+ T+ +E+DGG+ +TI++ A+AG + V+
Sbjct: 140 MSVEPGFGGQRFIPEVLSKVRAVRKMVDAGELTILVEIDGGINDDTIEQAAEAGVDCFVA 199
Query: 57 GTAV 60
G+AV
Sbjct: 200 GSAV 203
>sp|P65761|RPE_MYCBO Ribulose-phosphate 3-epimerase OS=Mycobacterium bovis (strain ATCC
BAA-935 / AF2122/97) GN=rpe PE=3 SV=1
Length = 229
Score = 59.7 bits (143), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 47/64 (73%), Gaps = 4/64 (6%)
Query: 1 MTVEPGFGGQKFMQDMMPKVKWLRENYP----TLNIEVDGGVGPNTIDECAKAGANWIVS 56
M+VEPGFGGQ+F+ +++ KV+ +R+ T+ +E+DGG+ +TI++ A+AG + V+
Sbjct: 140 MSVEPGFGGQRFIPEVLSKVRAVRKMVDAGELTILVEIDGGINDDTIEQAAEAGVDCFVA 199
Query: 57 GTAV 60
G+AV
Sbjct: 200 GSAV 203
>sp|Q43157|RPE_SPIOL Ribulose-phosphate 3-epimerase, chloroplastic OS=Spinacia oleracea
GN=RPE PE=1 SV=1
Length = 285
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 47/80 (58%), Gaps = 4/80 (5%)
Query: 1 MTVEPGFGGQKFMQDMMPKVKWLR----ENYPTLNIEVDGGVGPNTIDECAKAGANWIVS 56
M+V PGFGGQ F++ + K+ LR E IEVDGGV P + +AGAN +V+
Sbjct: 198 MSVNPGFGGQSFIESQVKKISDLRKMCVEKGVNPWIEVDGGVTPANAYKVIEAGANALVA 257
Query: 57 GTAVINCPDRIQAISTLKSS 76
G+AV D +AI +K+S
Sbjct: 258 GSAVFGAKDYAEAIKGIKAS 277
>sp|Q9CCP9|RPE_MYCLE Ribulose-phosphate 3-epimerase OS=Mycobacterium leprae (strain TN)
GN=rpe PE=3 SV=1
Length = 224
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 46/64 (71%), Gaps = 4/64 (6%)
Query: 1 MTVEPGFGGQKFMQDMMPKVKWLRENYP----TLNIEVDGGVGPNTIDECAKAGANWIVS 56
M+VEPGFGGQ F+ +++ KV+ +R+ T+ +E+DGG+ +TI++ A+AG + V+
Sbjct: 135 MSVEPGFGGQAFIPEVLSKVRTVRKMVDAGELTILVEIDGGINADTIEQAAEAGVDCFVA 194
Query: 57 GTAV 60
G+AV
Sbjct: 195 GSAV 198
>sp|O67098|RPE_AQUAE Ribulose-phosphate 3-epimerase OS=Aquifex aeolicus (strain VF5)
GN=rpe PE=3 SV=1
Length = 222
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 45/79 (56%), Gaps = 4/79 (5%)
Query: 1 MTVEPGFGGQKFMQDMMPKVKWLRENYPTLN----IEVDGGVGPNTIDECAKAGANWIVS 56
M+V PGF GQKF++ + +++ L+E +N IE+DGG+ N I E +AGA+ +V
Sbjct: 136 MSVNPGFSGQKFIERSIERLRILKEMRDRINPSCLIEIDGGIKENNIAEVVRAGADVVVV 195
Query: 57 GTAVINCPDRIQAISTLKS 75
G+ + D LKS
Sbjct: 196 GSGIFGAKDIEAQTRKLKS 214
>sp|P45455|RPE_SERMA Ribulose-phosphate 3-epimerase OS=Serratia marcescens GN=rpe PE=3
SV=1
Length = 210
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 43/69 (62%), Gaps = 4/69 (5%)
Query: 1 MTVEPGFGGQKFMQDMMPKVKWLR----ENYPTLNIEVDGGVGPNTIDECAKAGANWIVS 56
M+V PGFGGQ F+ + K++ +R ++ + +EVDGGV + I E A AGA+ V+
Sbjct: 139 MSVNPGFGGQSFIHGTLDKLRQVRKLIDDSGRDIRLEVDGGVKVDNIAEIAAAGADMFVA 198
Query: 57 GTAVINCPD 65
G+A+ PD
Sbjct: 199 GSAIFGQPD 207
>sp|Q04539|RPEP_CUPNH Ribulose-phosphate 3-epimerase, plasmid OS=Cupriavidus necator
(strain ATCC 17699 / H16 / DSM 428 / Stanier 337)
GN=cbbEP PE=3 SV=1
Length = 241
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 42/73 (57%), Gaps = 8/73 (10%)
Query: 1 MTVEPGFGGQKFMQDMMPKVKWLRENYPT--------LNIEVDGGVGPNTIDECAKAGAN 52
M+V PGFGGQ F+ ++ KV+ R + +E+DGGV + I E A+AGA+
Sbjct: 150 MSVNPGFGGQAFIPGVLDKVRQARARIDRQVAAGGRPVWLEIDGGVKADNITEIARAGAD 209
Query: 53 WIVSGTAVINCPD 65
V+G+AV PD
Sbjct: 210 TFVAGSAVFGAPD 222
>sp|Q58093|RPE_METJA Ribulose-phosphate 3-epimerase OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=rpe PE=3 SV=1
Length = 234
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 47/86 (54%), Gaps = 4/86 (4%)
Query: 1 MTVEPGFGGQKFMQDMMPKVKWLR----ENYPTLNIEVDGGVGPNTIDECAKAGANWIVS 56
MTVEPGF GQKF+ M K++ L+ EN I VDGG+ T KAGA+ +V+
Sbjct: 134 MTVEPGFSGQKFIPVMTKKIRKLKSMIVENGYDTKIFVDGGINVETAPLAVKAGADVLVA 193
Query: 57 GTAVINCPDRIQAISTLKSSVQKYLS 82
+A+ D A+ L+ + + L+
Sbjct: 194 ASAIFGKDDVKTAVKNLREAALEALN 219
>sp|Q9PKR7|RPE_CHLMU Ribulose-phosphate 3-epimerase OS=Chlamydia muridarum (strain MoPn
/ Nigg) GN=rpe PE=3 SV=1
Length = 228
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 41/64 (64%), Gaps = 6/64 (9%)
Query: 1 MTVEPGFGGQKFMQDMMPKVKWLRENYPTLN------IEVDGGVGPNTIDECAKAGANWI 54
M+V+PGF GQKF+ D + K++++R+ TL IEVDGG+ + C +AGA+ +
Sbjct: 140 MSVQPGFCGQKFIPDTIEKIRFVRQAIQTLGKEGSCLIEVDGGIDEESARACREAGADIL 199
Query: 55 VSGT 58
V+ +
Sbjct: 200 VAAS 203
>sp|P51012|RPE_RHOCA Ribulose-phosphate 3-epimerase OS=Rhodobacter capsulatus GN=cbbE
PE=3 SV=2
Length = 228
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/65 (47%), Positives = 42/65 (64%), Gaps = 5/65 (7%)
Query: 1 MTVEPGFGGQKFMQDMMPKVKWLRE---NYPTLNIEVDGGVGPNTIDECAKAGANWIVSG 57
MTV PGFGGQK++ DM KV+ LR + P ++IE+DGG+ P T A AGA+ V+G
Sbjct: 141 MTVNPGFGGQKYI-DMTAKVRKLRAMIGDRP-VHIEIDGGMDPVTAPLMAAAGADVFVAG 198
Query: 58 TAVIN 62
+ V
Sbjct: 199 SGVFK 203
>sp|P40117|RPEC_CUPNH Ribulose-phosphate 3-epimerase, chromosomal OS=Cupriavidus necator
(strain ATCC 17699 / H16 / DSM 428 / Stanier 337)
GN=cbbEC PE=3 SV=1
Length = 241
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 41/73 (56%), Gaps = 8/73 (10%)
Query: 1 MTVEPGFGGQKFMQDMMPKVKWLRENYPT--------LNIEVDGGVGPNTIDECAKAGAN 52
M+V PGFGGQ F+ ++ KV+ R + +E+DGGV + I A+AGA+
Sbjct: 150 MSVNPGFGGQAFIPGVLDKVRQARARIDRQVDAGGRPVWLEIDGGVKADNIAAIARAGAD 209
Query: 53 WIVSGTAVINCPD 65
V+G+AV PD
Sbjct: 210 TFVAGSAVFGAPD 222
>sp|P51013|RPE_RHORU Ribulose-phosphate 3-epimerase OS=Rhodospirillum rubrum GN=cbbE
PE=3 SV=2
Length = 225
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 3/83 (3%)
Query: 1 MTVEPGFGGQKFMQDMMPKVKWLR--ENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGT 58
M+V PGFGGQ F+ +PK+ L VDGGV P A+ GA+ +V
Sbjct: 139 MSVNPGFGGQSFIPSALPKIAALANGRRRACRGDRVDGGVNPADARALARPGADILVR-L 197
Query: 59 AVINCPDRIQAISTLKSSVQKYL 81
A+ DR +AI++++ + + L
Sbjct: 198 AIFGASDRAKAIASIRGAAESGL 220
>sp|P57603|RPE_BUCAI Ribulose-phosphate 3-epimerase OS=Buchnera aphidicola subsp.
Acyrthosiphon pisum (strain APS) GN=rpe PE=3 SV=1
Length = 228
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 44/82 (53%), Gaps = 4/82 (4%)
Query: 1 MTVEPGFGGQKFMQDMMPKVKWLRE----NYPTLNIEVDGGVGPNTIDECAKAGANWIVS 56
M+V PGFG Q F+ K++ +R+ N+ + +EVDGGV + I + A AGAN V
Sbjct: 139 MSVNPGFGNQSFLPSTFNKLREVRKIIDANFSDILLEVDGGVKLDNIADIACAGANVFVM 198
Query: 57 GTAVINCPDRIQAISTLKSSVQ 78
G+ + + I ++ ++
Sbjct: 199 GSGLFKYSNYKLVIEKIRKKLE 220
>sp|O84123|RPE_CHLTR Ribulose-phosphate 3-epimerase OS=Chlamydia trachomatis (strain
D/UW-3/Cx) GN=rpe PE=3 SV=1
Length = 233
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 39/64 (60%), Gaps = 6/64 (9%)
Query: 1 MTVEPGFGGQKFMQDMMPKVKWLRENYPTLN------IEVDGGVGPNTIDECAKAGANWI 54
M+V PGF GQKF+ D + +++++++ L IEVDGG+ + C +AGA+ +
Sbjct: 145 MSVHPGFCGQKFIPDTIERIQFVKQAIQVLGREGSCLIEVDGGIDKESARACREAGADIL 204
Query: 55 VSGT 58
V+ +
Sbjct: 205 VAAS 208
>sp|Q89A59|RPE_BUCBP Ribulose-phosphate 3-epimerase OS=Buchnera aphidicola subsp.
Baizongia pistaciae (strain Bp) GN=rpe PE=3 SV=1
Length = 228
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 40/66 (60%), Gaps = 4/66 (6%)
Query: 1 MTVEPGFGGQKFMQDMMPKVKWLRE----NYPTLNIEVDGGVGPNTIDECAKAGANWIVS 56
M+V PGF GQKF+ ++ K++ +RE + + +EVDGG+ + I + A G + V
Sbjct: 141 MSVNPGFPGQKFIPSILNKIRIVRELIDKSKKNILLEVDGGINLSNIFKIASFGTDIFVI 200
Query: 57 GTAVIN 62
G+A+ N
Sbjct: 201 GSAIFN 206
>sp|Q8K940|RPE_BUCAP Ribulose-phosphate 3-epimerase OS=Buchnera aphidicola subsp.
Schizaphis graminum (strain Sg) GN=rpe PE=3 SV=1
Length = 228
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
Query: 1 MTVEPGFGGQKFMQDMMPKVKWLRE----NYPTLNIEVDGGVGPNTIDECAKAGANWIVS 56
M+V PGFG Q F+ K++ +R+ N + +EVDGGV I E A +GAN V
Sbjct: 139 MSVNPGFGNQSFLPTSFNKLREVRKKIELNSSNILLEVDGGVKLENISEVAFSGANVFVI 198
Query: 57 GTAVINCPD 65
G+ + D
Sbjct: 199 GSGIFGYTD 207
>sp|O66107|RPE_TREPA Ribulose-phosphate 3-epimerase OS=Treponema pallidum (strain
Nichols) GN=rpe PE=3 SV=1
Length = 218
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 36/66 (54%), Gaps = 4/66 (6%)
Query: 1 MTVEPGFGGQKFMQDMMPKVKWL----RENYPTLNIEVDGGVGPNTIDECAKAGANWIVS 56
MTV PGF GQ+ + + KV L E + I VDGG+ T+ + AGA+ IVS
Sbjct: 139 MTVNPGFSGQQMIAHCLSKVSALVQMRTERGYSYMISVDGGIDCRTLPQALDAGADVIVS 198
Query: 57 GTAVIN 62
G+A +
Sbjct: 199 GSAFFS 204
>sp|Q9Z8Z9|RPE_CHLPN Ribulose-phosphate 3-epimerase OS=Chlamydia pneumoniae GN=rpe PE=3
SV=1
Length = 229
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 6/64 (9%)
Query: 1 MTVEPGFGGQKFMQDMMPKVKWLRENYPTLN------IEVDGGVGPNTIDECAKAGANWI 54
M+V PGF GQ F+ + + K+ + R TL IEVDGG+ + C AGA+ +
Sbjct: 141 MSVYPGFTGQSFLPNTIEKIAFARHAIKTLGLKDSCLIEVDGGIDQQSAPLCRDAGADIL 200
Query: 55 VSGT 58
V+ +
Sbjct: 201 VTAS 204
>sp|P47358|RPE_MYCGE Probable ribulose-phosphate 3-epimerase OS=Mycoplasma genitalium
(strain ATCC 33530 / G-37 / NCTC 10195) GN=rpe PE=3 SV=1
Length = 209
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 36/63 (57%), Gaps = 3/63 (4%)
Query: 1 MTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAV 60
M+V PG GGQ F + + +K N+ L IE+DGG+ N ID+ KA ++IV G+
Sbjct: 138 MSVPPGKGGQAFNEAVFTNLKI--ANHYNLKIEIDGGIKVNNIDQI-KAFVDFIVMGSGF 194
Query: 61 INC 63
I
Sbjct: 195 IKL 197
>sp|P32719|ALSE_ECOLI D-allulose-6-phosphate 3-epimerase OS=Escherichia coli (strain K12)
GN=alsE PE=1 SV=1
Length = 231
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
Query: 1 MTVEPGFGGQKFMQDMMPKV----KWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVS 56
MTV+PGF GQ F+ +M+ K+ W IEVDG T ++ AGA+ +
Sbjct: 135 MTVDPGFAGQPFIPEMLDKLAELKAWREREGLEYEIEVDGSCNQATYEKLMAAGADVFIV 194
Query: 57 GTA 59
GT+
Sbjct: 195 GTS 197
>sp|Q8SRP6|RPE_ENCCU Ribulose-phosphate 3-epimerase OS=Encephalitozoon cuniculi (strain
GB-M1) GN=RPE1 PE=3 SV=1
Length = 217
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 39/66 (59%), Gaps = 4/66 (6%)
Query: 1 MTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAV 60
M+V+PGFGGQKF ++ + KV+ +R Y + + +DGG+ + I GA++ V G+
Sbjct: 138 MSVKPGFGGQKFQEECLAKVEEVR-RYGKM-VGIDGGIEMSNIGRI--TGADYAVVGSGY 193
Query: 61 INCPDR 66
DR
Sbjct: 194 FRSGDR 199
>sp|B0KI44|HIS4_PSEPG 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]
imidazole-4-carboxamide isomerase OS=Pseudomonas putida
(strain GB-1) GN=hisA PE=3 SV=1
Length = 245
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 20 VKWLRENYPTLNIEVDGGV-GPNTIDECAKAGANWIVSGTAVINCPDRI 67
V + + YPTL I++ GG+ +TI+ KAG ++++ GT + P+ +
Sbjct: 66 VTAIAKRYPTLPIQIGGGIRSLDTIEHYVKAGVSYVIIGTKAVKQPEFV 114
>sp|A1U5H6|HIS4_MARAV 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]
imidazole-4-carboxamide isomerase OS=Marinobacter
aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) GN=hisA
PE=3 SV=1
Length = 245
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 20 VKWLRENYPTLNIEVDGGV-GPNTIDECAKAGANWIVSGTAVINCPD 65
VK + YP L I++ GG+ TI+ KAG W++ GT + P+
Sbjct: 66 VKAIAVKYPNLPIQIGGGIRSAETIEAYLKAGVQWVIIGTKAVKEPE 112
>sp|P75522|RPE_MYCPN Probable ribulose-phosphate 3-epimerase OS=Mycoplasma pneumoniae
(strain ATCC 29342 / M129) GN=rpe PE=3 SV=1
Length = 215
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 4/76 (5%)
Query: 1 MTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAV 60
M+V PG GGQ F + +K + + + IE+DGG+ + I + + N+IV G+
Sbjct: 143 MSVPPGKGGQAFNSAVFNNLKQAHKYHCS--IEIDGGIKLDNIHQI-QDDVNFIVMGSGF 199
Query: 61 INCPDRIQAISTLKSS 76
I +R Q LK++
Sbjct: 200 IKL-ERWQRQQLLKTN 214
>sp|Q3KJI6|HIS4_PSEPF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]
imidazole-4-carboxamide isomerase OS=Pseudomonas
fluorescens (strain Pf0-1) GN=hisA PE=3 SV=1
Length = 245
Score = 33.5 bits (75), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 20 VKWLRENYPTLNIEVDGGV-GPNTIDECAKAGANWIVSGTAVINCP 64
V + + YPTL I++ GG+ TI+ KAG ++++ GT + P
Sbjct: 66 VTAIAKRYPTLPIQIGGGIRSLETIEHYVKAGVSYVIIGTKAVKDP 111
>sp|O28964|FAEHP_ARCFU Bifunctional enzyme fae/hps OS=Archaeoglobus fulgidus (strain ATCC
49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
GN=fae-hps PE=3 SV=1
Length = 394
Score = 32.7 bits (73), Expect = 0.64, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 8/60 (13%)
Query: 23 LRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINCPDRIQAISTLKSSVQKYLS 82
++E + L + V GG+ P ++E AGA+ IV G AV D ++ +V+K++S
Sbjct: 328 IKEKFSVL-VAVAGGIRPENVEEVIAAGADIIVVGRAVTKARD-------VEGAVRKFMS 379
>sp|A1RXV6|GGGPS_THEPD Geranylgeranylglyceryl phosphate synthase OS=Thermofilum pendens
(strain Hrk 5) GN=Tpen_0633 PE=3 SV=1
Length = 255
Score = 32.7 bits (73), Expect = 0.65, Method: Composition-based stats.
Identities = 23/59 (38%), Positives = 33/59 (55%), Gaps = 5/59 (8%)
Query: 3 VEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGV-GPNTIDECAKAGANWIVSGTAV 60
+E G GG+ + PK+ + + TL + V GG+ P E AKAGA+ IV+GT V
Sbjct: 174 LEGGSGGEP----VPPKIVKMVKGVTTLPLIVGGGIRSPEVAKELAKAGADIIVTGTIV 228
>sp|P39362|SGCE_ECOLI Protein SgcE OS=Escherichia coli (strain K12) GN=sgcE PE=3 SV=1
Length = 210
Score = 32.7 bits (73), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 33/65 (50%)
Query: 1 MTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAV 60
MT EP GQ+F+ M K++ +R +P DGG+ + A AGA +V G A+
Sbjct: 135 MTSEPDGQGQRFIPSMCEKIQKVRTAFPQTECWADGGITLAAAQQLAAAGAQHMVIGRAL 194
Query: 61 INCPD 65
+ D
Sbjct: 195 FSSSD 199
>sp|Q4ZLQ1|HIS4_PSEU2 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]
imidazole-4-carboxamide isomerase OS=Pseudomonas
syringae pv. syringae (strain B728a) GN=hisA PE=3 SV=1
Length = 245
Score = 32.3 bits (72), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Query: 7 FGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGP-NTIDECAKAGANWIVSGTAVINCPD 65
F GQ D+ V + YP L I++ GG+ TI+ KAG ++++ GT + P+
Sbjct: 56 FEGQPVNGDV---VTAIARRYPNLPIQIGGGIRSLETIEHYVKAGVSYVIIGTKAVKEPE 112
>sp|Q48C80|HIS4_PSE14 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]
imidazole-4-carboxamide isomerase OS=Pseudomonas
syringae pv. phaseolicola (strain 1448A / Race 6)
GN=hisA PE=3 SV=1
Length = 245
Score = 32.3 bits (72), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Query: 7 FGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGP-NTIDECAKAGANWIVSGTAVINCPD 65
F GQ D+ V + YP L I++ GG+ TI+ KAG ++++ GT + P+
Sbjct: 56 FEGQPVNGDV---VTAIARRYPNLPIQIGGGIRSLETIEHYVKAGVSYVIIGTKAVKEPE 112
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.134 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,477,604
Number of Sequences: 539616
Number of extensions: 1097322
Number of successful extensions: 3254
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 49
Number of HSP's that attempted gapping in prelim test: 3147
Number of HSP's gapped (non-prelim): 112
length of query: 82
length of database: 191,569,459
effective HSP length: 53
effective length of query: 29
effective length of database: 162,969,811
effective search space: 4726124519
effective search space used: 4726124519
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)