Query psy11601
Match_columns 82
No_of_seqs 114 out of 1048
Neff 7.5
Searched_HMMs 46136
Date Fri Aug 16 22:50:07 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11601.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11601hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0036 Rpe Pentose-5-phosphat 99.9 2.2E-26 4.7E-31 155.1 7.5 79 1-79 138-219 (220)
2 PRK08745 ribulose-phosphate 3- 99.9 1.6E-25 3.5E-30 151.7 8.2 79 1-79 139-221 (223)
3 PRK08091 ribulose-phosphate 3- 99.9 6.7E-25 1.4E-29 149.1 7.8 77 1-77 147-227 (228)
4 PRK08005 epimerase; Validated 99.9 7.3E-25 1.6E-29 147.4 7.0 74 1-74 135-208 (210)
5 PRK14057 epimerase; Provisiona 99.9 1.3E-24 2.9E-29 149.4 8.0 78 1-78 161-242 (254)
6 PRK08883 ribulose-phosphate 3- 99.9 9.4E-25 2E-29 147.6 7.0 80 1-80 135-218 (220)
7 PRK09722 allulose-6-phosphate 99.9 5.5E-24 1.2E-28 144.7 8.1 79 1-79 137-221 (229)
8 KOG3111|consensus 99.9 4.6E-24 9.9E-29 141.6 7.4 80 1-80 141-220 (224)
9 PTZ00170 D-ribulose-5-phosphat 99.9 5.9E-23 1.3E-27 139.2 8.1 82 1-82 145-226 (228)
10 PF00834 Ribul_P_3_epim: Ribul 99.9 1.8E-22 3.9E-27 135.0 3.1 64 1-64 134-201 (201)
11 PLN02334 ribulose-phosphate 3- 99.8 9.4E-21 2E-25 128.0 7.9 79 1-79 146-224 (229)
12 TIGR03128 RuMP_HxlA 3-hexulose 99.7 1.5E-17 3.3E-22 110.1 7.7 75 2-76 131-205 (206)
13 PRK13813 orotidine 5'-phosphat 99.7 3.1E-17 6.7E-22 109.5 6.7 78 1-79 134-214 (215)
14 PRK05581 ribulose-phosphate 3- 99.7 3.6E-17 7.7E-22 108.9 6.9 77 1-77 138-218 (220)
15 PRK13306 ulaD 3-keto-L-gulonat 99.7 1.1E-16 2.4E-21 107.9 7.4 78 1-80 137-214 (216)
16 TIGR01163 rpe ribulose-phospha 99.7 7.8E-17 1.7E-21 106.4 5.8 74 1-74 133-210 (210)
17 cd00429 RPE Ribulose-5-phospha 99.6 2.9E-16 6.2E-21 103.5 5.7 74 1-74 134-211 (211)
18 PRK13125 trpA tryptophan synth 99.6 8.3E-15 1.8E-19 100.0 6.9 61 1-62 158-219 (244)
19 cd04726 KGPDC_HPS 3-Keto-L-gul 99.6 1.1E-14 2.3E-19 95.9 6.6 70 2-72 131-201 (202)
20 PRK13307 bifunctional formalde 99.5 2.3E-14 4.9E-19 103.9 7.9 72 3-79 309-380 (391)
21 PRK00043 thiE thiamine-phospha 99.5 1.1E-13 2.4E-18 91.4 9.1 77 3-79 133-210 (212)
22 cd00564 TMP_TenI Thiamine mono 99.5 1.3E-13 2.9E-18 89.2 7.8 73 1-74 122-195 (196)
23 PRK07028 bifunctional hexulose 99.5 1.7E-13 3.7E-18 99.7 7.4 78 2-80 136-213 (430)
24 TIGR00262 trpA tryptophan synt 99.4 1.6E-12 3.5E-17 89.6 7.6 76 1-78 170-253 (256)
25 COG0352 ThiE Thiamine monophos 99.4 2.5E-12 5.4E-17 86.8 7.3 68 13-81 143-210 (211)
26 cd04724 Tryptophan_synthase_al 99.4 2.4E-12 5.1E-17 88.0 6.5 60 1-62 159-220 (242)
27 PRK06512 thiamine-phosphate py 99.3 8.6E-12 1.9E-16 84.5 7.3 67 12-79 148-214 (221)
28 COG0269 SgbH 3-hexulose-6-phos 99.3 1.2E-11 2.6E-16 83.5 6.9 76 3-80 136-215 (217)
29 PRK07695 transcriptional regul 99.2 7.1E-11 1.5E-15 78.3 8.8 66 13-79 134-199 (201)
30 PRK12290 thiE thiamine-phospha 99.2 3.6E-11 7.8E-16 88.2 7.8 70 11-80 338-415 (437)
31 PRK09140 2-dehydro-3-deoxy-6-p 99.2 6.5E-11 1.4E-15 79.5 6.9 64 15-78 136-204 (206)
32 PRK03512 thiamine-phosphate py 99.2 1.3E-10 2.9E-15 78.1 7.6 66 14-79 143-208 (211)
33 TIGR00693 thiE thiamine-phosph 99.2 1.4E-10 3E-15 76.1 7.2 59 15-73 138-196 (196)
34 CHL00200 trpA tryptophan synth 99.2 1.6E-10 3.5E-15 80.1 7.4 71 4-75 176-252 (263)
35 TIGR00343 pyridoxal 5'-phospha 99.1 2.2E-10 4.8E-15 80.1 7.0 65 15-80 184-251 (287)
36 PRK04180 pyridoxal biosynthesi 99.1 3.1E-10 6.8E-15 79.6 7.8 67 13-80 188-257 (293)
37 PRK02615 thiamine-phosphate py 99.1 3.5E-10 7.7E-15 81.1 7.4 66 14-80 280-345 (347)
38 cd04727 pdxS PdxS is a subunit 99.1 6.7E-10 1.5E-14 77.6 7.5 66 14-80 180-248 (283)
39 PRK06552 keto-hydroxyglutarate 99.1 5E-10 1.1E-14 75.6 6.4 64 15-78 141-210 (213)
40 PLN02898 HMP-P kinase/thiamin- 99.0 1.7E-09 3.7E-14 80.2 8.1 69 13-82 429-500 (502)
41 TIGR01949 AroFGH_arch predicte 99.0 2E-09 4.3E-14 74.0 6.6 64 16-80 180-250 (258)
42 PRK09517 multifunctional thiam 98.9 3.7E-09 8E-14 81.9 8.1 66 15-80 150-217 (755)
43 PRK07455 keto-hydroxyglutarate 98.9 2.2E-09 4.8E-14 71.0 5.4 48 16-63 139-186 (187)
44 cd00331 IGPS Indole-3-glycerol 98.8 1.5E-08 3.1E-13 67.8 7.0 67 6-73 149-217 (217)
45 cd00958 DhnA Class I fructose- 98.8 1.7E-08 3.7E-13 68.1 7.2 61 16-77 167-234 (235)
46 PRK13305 sgbH 3-keto-L-gulonat 98.8 1.3E-08 2.8E-13 69.0 6.4 69 10-80 146-214 (218)
47 cd00452 KDPG_aldolase KDPG and 98.8 9.5E-09 2.1E-13 67.8 5.2 50 13-62 127-176 (190)
48 PRK07226 fructose-bisphosphate 98.8 3.1E-08 6.7E-13 68.5 7.2 63 17-80 185-254 (267)
49 PF01729 QRPTase_C: Quinolinat 98.7 2.3E-08 5E-13 65.5 5.2 54 11-64 108-162 (169)
50 PRK07428 nicotinate-nucleotide 98.7 2.2E-08 4.7E-13 70.4 5.2 54 11-64 224-278 (288)
51 cd01568 QPRTase_NadC Quinolina 98.7 2.2E-08 4.8E-13 69.5 4.9 51 12-63 210-261 (269)
52 PRK00278 trpC indole-3-glycero 98.6 1.6E-07 3.5E-12 64.9 7.6 65 10-75 192-258 (260)
53 PRK00230 orotidine 5'-phosphat 98.6 2.4E-07 5.1E-12 63.0 7.7 58 21-78 160-228 (230)
54 TIGR01182 eda Entner-Doudoroff 98.6 1.1E-07 2.3E-12 64.0 5.9 48 17-64 136-183 (204)
55 PRK05742 nicotinate-nucleotide 98.6 9.8E-08 2.1E-12 66.8 5.0 49 16-64 219-268 (277)
56 PF02581 TMP-TENI: Thiamine mo 98.6 1.7E-07 3.7E-12 61.3 5.6 47 13-60 134-180 (180)
57 cd01572 QPRTase Quinolinate ph 98.6 1.4E-07 3E-12 65.7 5.2 49 15-63 211-260 (268)
58 PRK07896 nicotinate-nucleotide 98.5 1.4E-07 3.1E-12 66.4 4.9 53 11-63 227-280 (289)
59 cd01573 modD_like ModD; Quinol 98.5 1.7E-07 3.7E-12 65.3 5.1 51 11-61 211-262 (272)
60 PRK01130 N-acetylmannosamine-6 98.5 4E-07 8.7E-12 61.0 6.4 62 13-78 158-220 (221)
61 PRK08999 hypothetical protein; 98.5 3E-07 6.4E-12 64.3 5.5 47 14-61 266-312 (312)
62 PRK08385 nicotinate-nucleotide 98.5 2.8E-07 6.2E-12 64.5 5.2 53 11-63 210-265 (278)
63 PRK05848 nicotinate-nucleotide 98.5 2.4E-07 5.2E-12 64.7 4.7 53 11-63 210-263 (273)
64 PRK08072 nicotinate-nucleotide 98.5 2.4E-07 5.2E-12 64.8 4.7 48 16-63 218-266 (277)
65 cd04728 ThiG Thiazole synthase 98.4 1.8E-06 4E-11 59.6 8.4 62 17-79 164-226 (248)
66 TIGR01334 modD putative molybd 98.4 4.1E-07 8.9E-12 63.7 5.0 56 11-66 216-273 (277)
67 PRK00208 thiG thiazole synthas 98.4 2.3E-06 5.1E-11 59.1 8.4 61 18-79 165-226 (250)
68 PF01081 Aldolase: KDPG and KH 98.4 3.7E-07 8.1E-12 61.1 4.3 48 17-64 136-183 (196)
69 PRK05718 keto-hydroxyglutarate 98.4 8.9E-07 1.9E-11 59.9 6.0 48 17-64 143-190 (212)
70 PRK04302 triosephosphate isome 98.4 1.8E-06 3.8E-11 58.3 7.3 65 12-76 155-221 (223)
71 PRK06015 keto-hydroxyglutarate 98.4 1.5E-06 3.3E-11 58.4 6.2 47 17-63 132-178 (201)
72 TIGR01740 pyrF orotidine 5'-ph 98.3 1.7E-06 3.6E-11 58.1 6.1 44 31-74 159-213 (213)
73 PRK06806 fructose-bisphosphate 98.3 1.9E-06 4.2E-11 60.4 6.5 59 13-74 185-245 (281)
74 cd04729 NanE N-acetylmannosami 98.3 1.6E-06 3.4E-11 58.1 5.9 53 15-68 164-217 (219)
75 PRK06096 molybdenum transport 98.3 9.6E-07 2.1E-11 62.1 5.0 52 11-62 217-269 (284)
76 cd00405 PRAI Phosphoribosylant 98.3 8.9E-07 1.9E-11 58.7 4.6 51 8-64 137-188 (203)
77 TIGR00078 nadC nicotinate-nucl 98.3 9.2E-07 2E-11 61.5 4.8 44 18-62 210-254 (265)
78 cd04730 NPD_like 2-Nitropropan 98.3 2.3E-06 4.9E-11 57.4 6.5 50 14-64 142-192 (236)
79 PRK07114 keto-hydroxyglutarate 98.3 2.3E-06 4.9E-11 58.3 6.1 47 17-63 146-194 (222)
80 PLN02591 tryptophan synthase 98.2 7.1E-06 1.5E-10 56.7 7.6 57 5-62 164-223 (250)
81 cd04740 DHOD_1B_like Dihydroor 98.2 7.3E-06 1.6E-10 57.0 7.6 61 6-67 209-270 (296)
82 PRK06559 nicotinate-nucleotide 98.2 2.1E-06 4.6E-11 60.5 4.7 51 11-63 225-275 (290)
83 PRK06106 nicotinate-nucleotide 98.2 2.9E-06 6.3E-11 59.6 4.7 50 12-63 223-272 (281)
84 PRK06978 nicotinate-nucleotide 98.2 3.1E-06 6.6E-11 59.8 4.8 52 11-64 233-284 (294)
85 COG0157 NadC Nicotinate-nucleo 98.2 3.2E-06 6.9E-11 59.3 4.8 54 11-64 216-269 (280)
86 PRK06543 nicotinate-nucleotide 98.2 3.1E-06 6.7E-11 59.5 4.7 52 11-64 221-272 (281)
87 PRK07259 dihydroorotate dehydr 98.2 1.2E-05 2.5E-10 56.2 7.4 62 7-69 213-275 (301)
88 PLN02716 nicotinate-nucleotide 98.2 5.5E-06 1.2E-10 58.9 5.7 48 16-63 248-296 (308)
89 PRK07315 fructose-bisphosphate 98.1 6.1E-06 1.3E-10 58.2 5.6 61 14-76 187-249 (293)
90 TIGR01037 pyrD_sub1_fam dihydr 98.1 1.1E-05 2.4E-10 56.3 6.6 64 13-77 219-284 (300)
91 PRK09016 quinolinate phosphori 98.1 5.3E-06 1.2E-10 58.7 4.7 51 11-63 236-286 (296)
92 cd02810 DHOD_DHPD_FMN Dihydroo 98.1 4.6E-06 1E-10 57.7 4.0 62 9-70 222-286 (289)
93 PRK13585 1-(5-phosphoribosyl)- 98.1 1.5E-05 3.2E-10 53.9 6.1 51 14-65 179-230 (241)
94 PRK13111 trpA tryptophan synth 98.0 2.5E-05 5.5E-10 54.2 6.9 50 11-62 183-233 (258)
95 cd01571 NAPRTase_B Nicotinate 98.0 1.1E-05 2.3E-10 57.1 4.8 51 13-63 227-279 (302)
96 cd02801 DUS_like_FMN Dihydrour 98.0 1.4E-05 3.1E-10 53.3 4.9 57 14-71 169-227 (231)
97 PF04131 NanE: Putative N-acet 97.9 5.8E-05 1.2E-09 50.5 6.8 62 13-79 130-192 (192)
98 cd02812 PcrB_like PcrB_like pr 97.9 3.6E-05 7.8E-10 52.4 5.9 54 7-63 156-210 (219)
99 PRK04169 geranylgeranylglycery 97.9 7.1E-05 1.5E-09 51.4 7.2 58 17-76 172-230 (232)
100 cd04722 TIM_phosphate_binding 97.9 5.4E-05 1.2E-09 48.1 6.2 41 17-58 159-200 (200)
101 TIGR02129 hisA_euk phosphoribo 97.9 2.9E-05 6.3E-10 53.9 5.0 47 16-63 64-110 (253)
102 TIGR00259 thylakoid_BtpA membr 97.9 9.5E-05 2.1E-09 51.4 7.4 68 9-81 183-256 (257)
103 PF03437 BtpA: BtpA family; I 97.8 6.2E-05 1.3E-09 52.3 5.9 63 14-78 186-253 (254)
104 cd02803 OYE_like_FMN_family Ol 97.8 6.6E-05 1.4E-09 52.7 6.1 56 15-71 268-325 (327)
105 PRK10415 tRNA-dihydrouridine s 97.8 9.3E-05 2E-09 52.6 6.8 68 2-70 167-237 (321)
106 PF01180 DHO_dh: Dihydroorotat 97.8 3.3E-05 7.2E-10 53.9 3.9 71 7-80 221-294 (295)
107 cd04738 DHOD_2_like Dihydrooro 97.7 3.5E-05 7.6E-10 54.7 3.7 62 6-67 256-320 (327)
108 PRK13585 1-(5-phosphoribosyl)- 97.7 0.00011 2.3E-09 49.7 5.7 50 15-65 63-113 (241)
109 CHL00162 thiG thiamin biosynth 97.7 0.00023 5E-09 49.6 7.3 58 20-78 181-239 (267)
110 PRK02083 imidazole glycerol ph 97.7 0.00013 2.8E-09 49.9 6.0 52 13-65 59-111 (253)
111 TIGR00735 hisF imidazoleglycer 97.7 0.00012 2.7E-09 50.2 5.7 51 15-66 61-112 (254)
112 PRK07188 nicotinate phosphorib 97.7 0.0001 2.2E-09 53.3 5.2 52 12-63 261-316 (352)
113 PF05690 ThiG: Thiazole biosyn 97.7 0.00019 4E-09 49.6 6.2 60 18-78 165-225 (247)
114 cd00516 PRTase_typeII Phosphor 97.6 0.00011 2.3E-09 50.9 5.0 36 28-63 238-273 (281)
115 cd02940 DHPD_FMN Dihydropyrimi 97.6 0.00023 5E-09 49.9 6.3 61 6-66 228-291 (299)
116 PRK10550 tRNA-dihydrouridine s 97.6 0.00018 3.9E-09 51.1 5.7 68 1-69 165-236 (312)
117 PRK11840 bifunctional sulfur c 97.6 0.00032 7E-09 50.3 6.9 67 8-78 231-299 (326)
118 PF01884 PcrB: PcrB family; I 97.6 0.0001 2.2E-09 50.6 4.1 57 18-74 171-228 (230)
119 cd04741 DHOD_1A_like Dihydroor 97.6 0.00029 6.2E-09 49.5 6.4 71 6-79 219-292 (294)
120 COG0800 Eda 2-keto-3-deoxy-6-p 97.6 0.00024 5.1E-09 48.2 5.7 43 20-62 144-186 (211)
121 TIGR01859 fruc_bis_ald_ fructo 97.6 0.00056 1.2E-08 48.0 7.8 47 14-61 186-234 (282)
122 PRK14114 1-(5-phosphoribosyl)- 97.6 0.00023 5.1E-09 48.9 5.8 53 16-70 62-115 (241)
123 PRK08318 dihydropyrimidine deh 97.5 0.00034 7.3E-09 51.1 6.6 57 6-62 228-287 (420)
124 PRK07565 dihydroorotate dehydr 97.5 0.00039 8.5E-09 49.4 6.7 56 6-62 217-273 (334)
125 cd04739 DHOD_like Dihydroorota 97.5 0.0005 1.1E-08 48.9 7.2 57 5-62 214-271 (325)
126 cd02809 alpha_hydroxyacid_oxid 97.5 0.0005 1.1E-08 48.2 7.1 68 12-79 209-284 (299)
127 PRK00748 1-(5-phosphoribosyl)- 97.5 0.00031 6.8E-09 47.1 5.6 49 15-64 61-110 (233)
128 COG0214 SNZ1 Pyridoxine biosyn 97.5 0.00028 6E-09 49.0 5.2 59 18-77 196-257 (296)
129 cd04732 HisA HisA. Phosphorib 97.5 0.00039 8.4E-09 46.6 5.9 49 16-65 61-110 (234)
130 PRK08227 autoinducer 2 aldolas 97.5 0.00056 1.2E-08 47.8 6.8 61 18-79 182-248 (264)
131 cd04731 HisF The cyclase subun 97.5 0.00038 8.2E-09 47.2 5.8 52 14-66 57-109 (243)
132 PRK14024 phosphoribosyl isomer 97.5 0.00036 7.8E-09 47.6 5.6 51 15-66 62-113 (241)
133 PLN02446 (5-phosphoribosyl)-5- 97.5 0.00033 7.1E-09 48.9 5.3 46 16-63 72-117 (262)
134 cd04732 HisA HisA. Phosphorib 97.4 0.0007 1.5E-08 45.3 6.6 49 15-64 177-226 (234)
135 PRK13587 1-(5-phosphoribosyl)- 97.4 0.00038 8.3E-09 47.5 5.4 51 15-66 63-114 (234)
136 PRK08662 nicotinate phosphorib 97.4 0.00033 7.1E-09 50.5 4.9 35 28-63 260-294 (343)
137 cd04731 HisF The cyclase subun 97.4 0.0009 1.9E-08 45.3 6.7 52 16-68 181-235 (243)
138 TIGR00737 nifR3_yhdG putative 97.4 0.00075 1.6E-08 47.7 6.5 56 14-70 178-235 (319)
139 PRK02506 dihydroorotate dehydr 97.4 0.00027 5.8E-09 50.0 4.1 71 7-77 218-292 (310)
140 PF00977 His_biosynth: Histidi 97.4 0.00036 7.7E-09 47.4 4.5 51 15-66 60-111 (229)
141 PRK13586 1-(5-phosphoribosyl)- 97.3 0.00075 1.6E-08 46.1 5.9 48 17-65 62-110 (232)
142 TIGR00007 phosphoribosylformim 97.3 0.00064 1.4E-08 45.6 5.5 47 16-63 60-107 (230)
143 TIGR01919 hisA-trpF 1-(5-phosp 97.3 0.00076 1.6E-08 46.3 5.9 53 16-69 62-115 (243)
144 PRK05286 dihydroorotate dehydr 97.3 0.00018 3.9E-09 51.5 2.8 72 7-78 266-341 (344)
145 COG3010 NanE Putative N-acetyl 97.3 0.0021 4.5E-08 43.8 7.7 69 6-79 157-228 (229)
146 cd04723 HisA_HisF Phosphoribos 97.3 0.0011 2.5E-08 45.0 6.5 48 15-63 65-113 (233)
147 TIGR01768 GGGP-family geranylg 97.3 0.00087 1.9E-08 45.8 5.9 53 8-63 161-214 (223)
148 PRK04128 1-(5-phosphoribosyl)- 97.3 0.00081 1.8E-08 45.8 5.5 45 16-61 61-106 (228)
149 PF00290 Trp_syntA: Tryptophan 97.3 0.0013 2.7E-08 45.9 6.5 72 5-78 173-252 (259)
150 cd04725 OMP_decarboxylase_like 97.3 0.00086 1.9E-08 45.1 5.6 44 28-72 162-215 (216)
151 COG1830 FbaB DhnA-type fructos 97.3 0.00093 2E-08 46.7 5.6 61 18-79 192-259 (265)
152 PRK11815 tRNA-dihydrouridine s 97.2 0.0016 3.4E-08 46.6 6.9 57 13-70 189-246 (333)
153 PRK01033 imidazole glycerol ph 97.2 0.0011 2.3E-08 45.7 5.4 50 15-65 61-111 (258)
154 PRK06801 hypothetical protein; 97.2 0.0017 3.8E-08 45.7 6.4 47 15-62 190-238 (286)
155 TIGR02151 IPP_isom_2 isopenten 97.2 0.00099 2.1E-08 47.6 5.1 63 16-78 241-310 (333)
156 COG0042 tRNA-dihydrouridine sy 97.1 0.0021 4.6E-08 45.9 6.7 65 2-66 170-237 (323)
157 PRK01033 imidazole glycerol ph 97.1 0.0016 3.6E-08 44.8 5.9 47 16-63 184-232 (258)
158 TIGR03572 WbuZ glycosyl amidat 97.1 0.0017 3.6E-08 43.7 5.7 49 16-65 62-111 (232)
159 PF00218 IGPS: Indole-3-glycer 97.1 0.00081 1.8E-08 46.7 4.1 57 17-73 196-254 (254)
160 TIGR00742 yjbN tRNA dihydrouri 97.1 0.0022 4.7E-08 45.7 6.3 65 2-67 159-233 (318)
161 TIGR03572 WbuZ glycosyl amidat 97.1 0.002 4.3E-08 43.4 5.7 44 16-60 185-230 (232)
162 cd02933 OYE_like_FMN Old yello 97.1 0.0022 4.8E-08 45.9 6.2 56 15-71 272-328 (338)
163 PLN02495 oxidoreductase, actin 97.1 0.0018 4E-08 47.3 5.9 72 7-78 243-322 (385)
164 KOG1606|consensus 97.1 0.0029 6.2E-08 43.6 6.4 46 33-78 213-259 (296)
165 PF00977 His_biosynth: Histidi 97.0 0.00076 1.7E-08 45.7 3.6 53 8-62 172-225 (229)
166 TIGR00736 nifR3_rel_arch TIM-b 97.0 0.0019 4.1E-08 44.3 5.5 60 2-63 166-226 (231)
167 PRK14565 triosephosphate isome 97.0 0.0027 5.8E-08 43.8 6.2 65 8-72 167-233 (237)
168 PRK06852 aldolase; Validated 97.0 0.0028 6.1E-08 45.1 6.4 62 18-79 219-289 (304)
169 PLN02826 dihydroorotate dehydr 97.0 0.0045 9.8E-08 45.6 7.6 57 6-62 317-375 (409)
170 TIGR01036 pyrD_sub2 dihydrooro 96.9 0.00058 1.3E-08 48.9 2.1 64 6-69 264-330 (335)
171 PF00215 OMPdecase: Orotidine 96.9 0.00073 1.6E-08 45.5 2.3 43 31-73 183-226 (226)
172 COG2022 ThiG Uncharacterized e 96.9 0.0074 1.6E-07 41.9 7.2 61 17-78 171-232 (262)
173 cd02932 OYE_YqiM_FMN Old yello 96.8 0.0025 5.4E-08 45.3 4.9 53 17-70 279-333 (336)
174 PF00697 PRAI: N-(5'phosphorib 96.8 0.0014 2.9E-08 43.6 3.3 56 5-63 126-182 (197)
175 cd04723 HisA_HisF Phosphoribos 96.8 0.0034 7.5E-08 42.6 5.3 47 16-63 177-224 (233)
176 PRK01222 N-(5'-phosphoribosyl) 96.8 0.0052 1.1E-07 41.3 6.0 68 6-81 138-209 (210)
177 COG0167 PyrD Dihydroorotate de 96.8 0.0061 1.3E-07 43.6 6.6 73 6-78 217-293 (310)
178 PRK02083 imidazole glycerol ph 96.8 0.0074 1.6E-07 41.2 6.8 58 16-74 185-245 (253)
179 TIGR03151 enACPred_II putative 96.8 0.0044 9.6E-08 43.9 5.7 47 15-62 148-195 (307)
180 TIGR00007 phosphoribosylformim 96.8 0.005 1.1E-07 41.3 5.7 47 16-63 177-224 (230)
181 TIGR01769 GGGP geranylgeranylg 96.8 0.0046 1E-07 41.7 5.5 40 17-57 165-205 (205)
182 PRK05437 isopentenyl pyrophosp 96.8 0.0051 1.1E-07 44.3 6.0 64 16-79 248-318 (352)
183 cd04733 OYE_like_2_FMN Old yel 96.7 0.0045 9.7E-08 44.1 5.5 53 18-71 282-336 (338)
184 PRK06843 inosine 5-monophospha 96.7 0.0034 7.3E-08 46.3 4.9 43 19-62 247-290 (404)
185 COG0134 TrpC Indole-3-glycerol 96.6 0.0088 1.9E-07 41.7 6.3 56 19-74 196-253 (254)
186 COG1646 Predicted phosphate-bi 96.6 0.0056 1.2E-07 42.3 5.1 48 14-64 179-227 (240)
187 PLN02411 12-oxophytodienoate r 96.6 0.0051 1.1E-07 44.9 5.1 52 20-72 305-357 (391)
188 COG0135 TrpF Phosphoribosylant 96.6 0.0054 1.2E-07 41.6 4.9 67 5-78 136-206 (208)
189 cd04735 OYE_like_4_FMN Old yel 96.6 0.0024 5.2E-08 45.9 3.3 53 19-71 273-327 (353)
190 PRK14114 1-(5-phosphoribosyl)- 96.6 0.0082 1.8E-07 41.3 5.7 53 16-69 176-236 (241)
191 PRK00748 1-(5-phosphoribosyl)- 96.5 0.0081 1.8E-07 40.2 5.5 47 16-63 178-226 (233)
192 cd00945 Aldolase_Class_I Class 96.5 0.0049 1.1E-07 39.6 4.2 54 4-57 140-201 (201)
193 COG0106 HisA Phosphoribosylfor 96.5 0.012 2.7E-07 40.7 6.3 57 17-74 180-239 (241)
194 PRK05458 guanosine 5'-monophos 96.5 0.0057 1.2E-07 43.9 4.8 46 16-62 189-235 (326)
195 KOG0538|consensus 96.5 0.022 4.9E-07 41.0 7.7 75 4-78 252-334 (363)
196 PRK13587 1-(5-phosphoribosyl)- 96.5 0.0061 1.3E-07 41.6 4.7 45 17-62 181-226 (234)
197 PRK13523 NADPH dehydrogenase N 96.5 0.006 1.3E-07 43.8 4.9 55 17-72 264-320 (337)
198 PF01070 FMN_dh: FMN-dependent 96.4 0.012 2.5E-07 42.6 6.1 56 6-61 256-313 (356)
199 TIGR00734 hisAF_rel hisA/hisF 96.4 0.0085 1.8E-07 40.6 5.0 46 16-62 172-218 (221)
200 TIGR00735 hisF imidazoleglycer 96.4 0.016 3.4E-07 39.8 6.4 51 16-67 187-240 (254)
201 PRK10605 N-ethylmaleimide redu 96.4 0.0091 2E-07 43.2 5.3 50 21-71 285-335 (362)
202 PRK14024 phosphoribosyl isomer 96.4 0.017 3.7E-07 39.4 6.3 58 13-71 175-237 (241)
203 cd00381 IMPDH IMPDH: The catal 96.3 0.011 2.4E-07 42.2 5.1 35 29-63 197-232 (325)
204 COG0434 SgcQ Predicted TIM-bar 96.3 0.0098 2.1E-07 41.4 4.6 63 14-79 191-259 (263)
205 PRK13802 bifunctional indole-3 96.2 0.019 4E-07 45.0 6.5 59 17-75 198-258 (695)
206 KOG2335|consensus 96.2 0.011 2.4E-07 42.9 4.8 53 9-61 183-237 (358)
207 COG0106 HisA Phosphoribosylfor 96.2 0.019 4E-07 39.8 5.7 49 16-65 63-112 (241)
208 PLN02535 glycolate oxidase 96.2 0.034 7.3E-07 40.6 7.2 50 12-61 260-311 (364)
209 COG0159 TrpA Tryptophan syntha 96.2 0.027 5.9E-07 39.5 6.5 55 6-62 181-238 (265)
210 cd02929 TMADH_HD_FMN Trimethyl 96.2 0.016 3.4E-07 42.0 5.5 54 17-71 278-333 (370)
211 PRK04128 1-(5-phosphoribosyl)- 96.1 0.018 3.8E-07 39.2 5.4 37 28-64 181-218 (228)
212 PLN02274 inosine-5'-monophosph 96.1 0.015 3.3E-07 43.9 5.5 48 15-63 338-386 (505)
213 cd03332 LMO_FMN L-Lactate 2-mo 96.1 0.032 7E-07 40.9 7.0 50 12-61 290-341 (383)
214 TIGR01919 hisA-trpF 1-(5-phosp 96.1 0.021 4.5E-07 39.3 5.7 53 16-69 181-238 (243)
215 COG0284 PyrF Orotidine-5'-phos 96.1 0.036 7.8E-07 38.3 6.9 38 43-80 200-237 (240)
216 PRK13586 1-(5-phosphoribosyl)- 96.1 0.016 3.4E-07 39.7 5.0 44 17-62 179-223 (232)
217 PRK14567 triosephosphate isome 96.1 0.025 5.5E-07 39.4 6.0 64 9-72 173-246 (253)
218 cd02811 IDI-2_FMN Isopentenyl- 96.1 0.039 8.4E-07 39.4 7.0 63 16-78 242-310 (326)
219 cd04736 MDH_FMN Mandelate dehy 96.1 0.042 9E-07 40.1 7.3 47 14-61 275-322 (361)
220 PLN02446 (5-phosphoribosyl)-5- 96.1 0.032 6.9E-07 39.1 6.4 56 16-72 195-256 (262)
221 PF01207 Dus: Dihydrouridine s 96.0 0.0077 1.7E-07 42.6 3.4 65 1-66 155-222 (309)
222 cd02931 ER_like_FMN Enoate red 96.0 0.019 4.2E-07 41.7 5.5 53 18-71 295-349 (382)
223 cd00311 TIM Triosephosphate is 96.0 0.011 2.5E-07 40.7 4.1 39 28-66 198-237 (242)
224 PLN02617 imidazole glycerol ph 96.0 0.023 5E-07 43.3 5.9 48 15-63 301-360 (538)
225 cd04734 OYE_like_3_FMN Old yel 95.9 0.022 4.8E-07 40.8 5.4 54 17-71 274-329 (343)
226 TIGR02814 pfaD_fam PfaD family 95.9 0.019 4E-07 42.9 5.0 34 29-62 224-258 (444)
227 cd02911 arch_FMN Archeal FMN-b 95.8 0.034 7.5E-07 37.9 5.7 42 15-59 180-222 (233)
228 KOG3055|consensus 95.8 0.041 8.9E-07 37.5 5.9 34 31-64 84-117 (263)
229 cd04747 OYE_like_5_FMN Old yel 95.8 0.024 5.2E-07 41.1 5.2 53 18-71 270-342 (361)
230 PF03060 NMO: Nitronate monoox 95.8 0.024 5.1E-07 40.4 4.9 47 15-62 177-224 (330)
231 PRK05500 bifunctional orotidin 95.7 0.063 1.4E-06 40.4 7.3 62 20-81 194-262 (477)
232 TIGR01302 IMP_dehydrog inosine 95.7 0.027 5.9E-07 41.8 5.3 35 29-63 327-362 (450)
233 cd04737 LOX_like_FMN L-Lactate 95.7 0.049 1.1E-06 39.5 6.4 65 14-78 260-332 (351)
234 cd00331 IGPS Indole-3-glycerol 95.7 0.039 8.6E-07 36.7 5.6 47 15-62 59-106 (217)
235 PRK05567 inosine 5'-monophosph 95.6 0.042 9.1E-07 41.1 6.0 48 16-63 316-366 (486)
236 cd04742 NPD_FabD 2-Nitropropan 95.6 0.029 6.4E-07 41.6 5.1 34 29-62 219-253 (418)
237 TIGR01302 IMP_dehydrog inosine 95.6 0.031 6.6E-07 41.5 5.2 46 12-57 248-293 (450)
238 cd02930 DCR_FMN 2,4-dienoyl-Co 95.6 0.018 3.8E-07 41.3 3.8 54 17-71 265-320 (353)
239 TIGR02708 L_lactate_ox L-lacta 95.6 0.078 1.7E-06 38.7 7.1 47 14-60 267-315 (367)
240 PRK13957 indole-3-glycerol-pho 95.6 0.064 1.4E-06 37.2 6.3 55 18-73 190-246 (247)
241 PLN02460 indole-3-glycerol-pho 95.5 0.061 1.3E-06 39.0 6.2 46 29-74 288-334 (338)
242 COG0107 HisF Imidazoleglycerol 95.5 0.035 7.7E-07 38.5 4.8 51 15-66 61-112 (256)
243 TIGR01303 IMP_DH_rel_1 IMP deh 95.5 0.036 7.8E-07 41.6 5.2 46 12-57 249-294 (475)
244 PF03932 CutC: CutC family; I 95.5 0.064 1.4E-06 36.2 5.9 44 11-54 151-196 (201)
245 PRK11572 copper homeostasis pr 95.5 0.033 7.1E-07 38.7 4.6 49 9-57 150-198 (248)
246 PRK14905 triosephosphate isome 95.4 0.07 1.5E-06 38.8 6.4 71 6-76 181-261 (355)
247 PRK05567 inosine 5'-monophosph 95.2 0.053 1.1E-06 40.6 5.4 45 13-57 253-297 (486)
248 PRK09427 bifunctional indole-3 95.2 0.069 1.5E-06 40.0 5.8 67 5-79 384-453 (454)
249 TIGR01306 GMP_reduct_2 guanosi 95.1 0.11 2.4E-06 37.4 6.5 46 16-62 186-232 (321)
250 cd02922 FCB2_FMN Flavocytochro 95.1 0.14 3E-06 37.0 7.1 48 15-62 253-305 (344)
251 PLN02979 glycolate oxidase 95.1 0.15 3.3E-06 37.3 7.3 56 6-61 254-311 (366)
252 PF00724 Oxidored_FMN: NADH:fl 95.1 0.06 1.3E-06 38.5 5.1 53 18-71 281-335 (341)
253 cd02808 GltS_FMN Glutamate syn 95.1 0.075 1.6E-06 38.9 5.7 34 28-61 284-318 (392)
254 PF00478 IMPDH: IMP dehydrogen 95.1 0.063 1.4E-06 39.0 5.2 44 19-63 202-246 (352)
255 PRK08649 inosine 5-monophospha 94.9 0.028 6.2E-07 40.9 3.1 34 29-62 256-290 (368)
256 PTZ00314 inosine-5'-monophosph 94.9 0.063 1.4E-06 40.5 5.0 46 12-57 265-310 (495)
257 PRK06843 inosine 5-monophospha 94.8 0.094 2E-06 38.8 5.7 46 12-57 177-222 (404)
258 COG0149 TpiA Triosephosphate i 94.8 0.11 2.3E-06 36.3 5.5 48 28-75 201-249 (251)
259 PRK07807 inosine 5-monophospha 94.8 0.061 1.3E-06 40.4 4.6 48 16-63 315-365 (479)
260 PRK00042 tpiA triosephosphate 94.7 0.078 1.7E-06 36.8 4.7 45 28-72 202-247 (250)
261 PRK13958 N-(5'-phosphoribosyl) 94.7 0.11 2.4E-06 34.9 5.3 66 5-78 135-204 (207)
262 PRK11197 lldD L-lactate dehydr 94.6 0.21 4.4E-06 36.8 6.8 65 14-78 284-356 (381)
263 PLN02429 triosephosphate isome 94.5 0.16 3.5E-06 36.4 6.1 64 9-72 233-307 (315)
264 TIGR00734 hisAF_rel hisA/hisF 94.5 0.09 1.9E-06 35.6 4.6 48 15-65 66-116 (221)
265 PLN02493 probable peroxisomal 94.5 0.25 5.5E-06 36.1 7.1 50 12-61 261-312 (367)
266 cd00959 DeoC 2-deoxyribose-5-p 94.4 0.073 1.6E-06 35.4 4.0 48 5-55 152-201 (203)
267 PTZ00314 inosine-5'-monophosph 94.4 0.098 2.1E-06 39.5 5.0 45 18-63 334-379 (495)
268 PRK09250 fructose-bisphosphate 94.4 0.17 3.7E-06 36.8 6.0 57 17-74 267-334 (348)
269 COG2070 Dioxygenases related t 94.4 0.056 1.2E-06 38.9 3.6 50 13-62 168-218 (336)
270 KOG1799|consensus 94.2 0.096 2.1E-06 38.6 4.4 72 6-77 333-407 (471)
271 COG1304 idi Isopentenyl diphos 94.2 0.12 2.6E-06 37.6 4.9 52 10-61 253-306 (360)
272 cd00381 IMPDH IMPDH: The catal 94.2 0.14 3E-06 36.6 5.1 44 14-57 120-163 (325)
273 TIGR02129 hisA_euk phosphoribo 94.1 0.11 2.4E-06 36.2 4.5 46 16-62 189-237 (253)
274 PF01791 DeoC: DeoC/LacD famil 94.0 0.055 1.2E-06 36.6 2.8 50 12-62 173-235 (236)
275 PRK15492 triosephosphate isome 94.0 0.21 4.7E-06 34.8 5.7 63 6-68 180-252 (260)
276 PRK05096 guanosine 5'-monophos 93.6 0.19 4E-06 36.6 4.9 48 10-57 132-179 (346)
277 TIGR01303 IMP_DH_rel_1 IMP deh 93.5 0.16 3.5E-06 38.2 4.7 34 29-62 328-362 (475)
278 PRK05718 keto-hydroxyglutarate 93.5 0.21 4.6E-06 33.8 4.9 45 13-57 50-94 (212)
279 TIGR01305 GMP_reduct_1 guanosi 93.5 0.21 4.5E-06 36.3 5.0 47 10-57 131-178 (343)
280 PRK09427 bifunctional indole-3 93.4 0.44 9.5E-06 35.8 6.7 57 18-75 198-256 (454)
281 TIGR00126 deoC deoxyribose-pho 93.2 0.089 1.9E-06 35.6 2.7 51 5-58 153-205 (211)
282 PRK05096 guanosine 5'-monophos 93.2 0.26 5.7E-06 35.8 5.2 35 28-62 212-247 (346)
283 PTZ00333 triosephosphate isome 92.9 0.4 8.7E-06 33.4 5.7 62 9-71 177-249 (255)
284 PRK13803 bifunctional phosphor 92.9 0.42 9.2E-06 36.9 6.3 67 6-79 142-214 (610)
285 TIGR01304 IMP_DH_rel_2 IMP deh 92.8 0.097 2.1E-06 38.3 2.6 34 29-62 255-289 (369)
286 PRK00507 deoxyribose-phosphate 92.6 0.27 5.9E-06 33.5 4.4 54 3-59 155-210 (221)
287 PF00121 TIM: Triosephosphate 92.5 0.22 4.7E-06 34.4 3.9 59 9-67 172-241 (244)
288 PF00478 IMPDH: IMP dehydrogen 92.4 0.33 7.1E-06 35.4 4.8 48 10-57 130-177 (352)
289 PRK05458 guanosine 5'-monophos 92.4 0.3 6.6E-06 35.2 4.6 45 12-57 123-168 (326)
290 cd08207 RLP_NonPhot Ribulose b 92.3 1.4 2.9E-05 32.8 7.9 77 4-80 300-386 (406)
291 COG1902 NemA NADH:flavin oxido 91.9 0.59 1.3E-05 34.1 5.7 52 20-72 280-333 (363)
292 PLN02274 inosine-5'-monophosph 91.9 0.45 9.8E-06 36.1 5.2 46 12-57 272-317 (505)
293 PLN02363 phosphoribosylanthran 91.9 0.57 1.2E-05 32.6 5.4 49 29-78 199-252 (256)
294 KOG2550|consensus 91.5 0.38 8.3E-06 36.1 4.3 49 9-57 272-320 (503)
295 PF13277 YmdB: YmdB-like prote 91.5 0.29 6.2E-06 34.2 3.5 55 17-72 16-78 (253)
296 cd04737 LOX_like_FMN L-Lactate 91.4 1.5 3.2E-05 31.9 7.2 61 16-77 209-273 (351)
297 cd01570 NAPRTase_A Nicotinate 91.2 0.52 1.1E-05 33.8 4.7 37 28-64 277-315 (327)
298 COG3142 CutC Uncharacterized p 91.2 0.33 7.2E-06 33.6 3.6 48 9-56 150-199 (241)
299 TIGR00419 tim triosephosphate 91.1 0.47 1E-05 32.0 4.2 55 9-63 145-204 (205)
300 PRK07107 inosine 5-monophospha 91.0 0.51 1.1E-05 35.8 4.7 34 29-62 352-386 (502)
301 PF04481 DUF561: Protein of un 91.0 1.5 3.3E-05 30.3 6.6 68 6-74 154-231 (242)
302 PRK08185 hypothetical protein; 90.9 2.4 5.1E-05 30.0 7.7 45 16-61 186-232 (283)
303 KOG2550|consensus 90.7 0.3 6.6E-06 36.6 3.2 45 17-62 343-388 (503)
304 PRK08255 salicylyl-CoA 5-hydro 90.5 0.71 1.5E-05 36.4 5.3 47 20-67 679-727 (765)
305 TIGR01305 GMP_reduct_1 guanosi 90.4 0.67 1.5E-05 33.7 4.7 47 16-62 197-246 (343)
306 TIGR01182 eda Entner-Doudoroff 90.3 0.89 1.9E-05 30.7 5.0 44 13-57 43-87 (204)
307 KOG0538|consensus 90.3 1.6 3.5E-05 31.7 6.5 67 10-77 205-272 (363)
308 TIGR01306 GMP_reduct_2 guanosi 90.3 0.82 1.8E-05 32.9 5.0 47 10-57 118-165 (321)
309 TIGR00640 acid_CoA_mut_C methy 90.2 3.2 6.9E-05 26.0 7.6 52 23-79 77-129 (132)
310 COG1411 Uncharacterized protei 89.9 0.67 1.5E-05 31.7 4.1 55 12-70 168-223 (229)
311 KOG1436|consensus 89.9 0.87 1.9E-05 33.3 4.9 65 6-70 307-374 (398)
312 cd04736 MDH_FMN Mandelate dehy 89.8 0.87 1.9E-05 33.3 4.9 42 15-57 223-264 (361)
313 PRK07807 inosine 5-monophospha 89.8 0.93 2E-05 34.2 5.2 45 13-57 252-296 (479)
314 PLN02493 probable peroxisomal 89.7 0.91 2E-05 33.3 5.0 43 14-57 210-252 (367)
315 PLN02979 glycolate oxidase 89.7 0.99 2.1E-05 33.1 5.1 44 14-58 209-252 (366)
316 PRK06015 keto-hydroxyglutarate 89.6 1 2.3E-05 30.3 4.8 44 13-57 39-83 (201)
317 PRK05437 isopentenyl pyrophosp 89.5 0.82 1.8E-05 33.1 4.5 42 16-58 174-218 (352)
318 cd02811 IDI-2_FMN Isopentenyl- 89.4 0.94 2E-05 32.3 4.8 42 16-58 166-210 (326)
319 TIGR02127 pyrF_sub2 orotidine 89.4 1.3 2.7E-05 31.0 5.3 52 19-71 200-258 (261)
320 COG1692 Calcineurin-like phosp 89.3 0.96 2.1E-05 31.8 4.6 54 16-70 18-79 (266)
321 cd02922 FCB2_FMN Flavocytochro 89.3 1.2 2.6E-05 32.3 5.2 63 13-76 198-264 (344)
322 cd03332 LMO_FMN L-Lactate 2-mo 89.2 1 2.2E-05 33.2 4.9 62 15-77 240-305 (383)
323 PF01081 Aldolase: KDPG and KH 89.1 1 2.2E-05 30.2 4.5 45 13-57 43-87 (196)
324 PF01070 FMN_dh: FMN-dependent 88.8 0.99 2.1E-05 32.8 4.6 63 14-77 211-277 (356)
325 TIGR03128 RuMP_HxlA 3-hexulose 88.1 1.7 3.8E-05 28.4 5.1 44 14-57 37-83 (206)
326 PRK11475 DNA-binding transcrip 88.1 4.2 9.1E-05 27.1 7.0 59 15-78 54-114 (207)
327 cd01715 ETF_alpha The electron 87.9 5.2 0.00011 25.5 7.2 71 9-79 10-81 (168)
328 TIGR02151 IPP_isom_2 isopenten 87.8 1.4 2.9E-05 31.6 4.7 42 16-58 167-211 (333)
329 PLN02535 glycolate oxidase 87.7 1.4 3.1E-05 32.2 4.8 43 14-57 209-251 (364)
330 cd00452 KDPG_aldolase KDPG and 87.7 1.8 3.9E-05 28.3 5.0 44 14-58 40-84 (190)
331 COG0800 Eda 2-keto-3-deoxy-6-p 86.8 1.4 3.1E-05 30.0 4.1 44 13-56 48-91 (211)
332 PRK12484 nicotinate phosphorib 86.7 2.3 5.1E-05 31.8 5.6 35 28-62 278-314 (443)
333 cd04726 KGPDC_HPS 3-Keto-L-gul 86.2 2.1 4.5E-05 27.8 4.6 44 14-57 38-84 (202)
334 PRK13111 trpA tryptophan synth 86.0 4.7 0.0001 28.0 6.5 58 15-78 75-139 (258)
335 cd02809 alpha_hydroxyacid_oxid 86.0 6.8 0.00015 27.5 7.4 41 16-57 160-200 (299)
336 COG1908 FrhD Coenzyme F420-red 85.9 2.8 6E-05 26.5 4.8 50 30-79 33-89 (132)
337 TIGR01513 NAPRTase_put putativ 85.9 1.9 4.1E-05 32.3 4.8 35 28-62 276-312 (443)
338 cd08209 RLP_DK-MTP-1-P-enolase 85.8 7.6 0.00016 28.8 7.8 52 29-80 313-367 (391)
339 PRK11197 lldD L-lactate dehydr 85.8 2.1 4.7E-05 31.5 4.9 41 16-57 233-273 (381)
340 cd00956 Transaldolase_FSA Tran 85.8 4.1 8.8E-05 27.4 6.0 50 28-77 156-209 (211)
341 PLN02617 imidazole glycerol ph 85.7 5.8 0.00012 30.5 7.3 50 17-67 471-523 (538)
342 PRK09243 nicotinate phosphorib 85.5 2.4 5.2E-05 31.9 5.2 36 28-63 285-322 (464)
343 PF02579 Nitro_FeMo-Co: Dinitr 85.5 4.8 0.0001 22.7 5.5 50 19-74 44-93 (94)
344 KOG4201|consensus 85.3 1.6 3.4E-05 30.5 3.8 45 30-74 238-283 (289)
345 PRK01130 N-acetylmannosamine-6 85.3 6.2 0.00013 26.2 6.7 57 17-75 45-116 (221)
346 TIGR00875 fsa_talC_mipB fructo 85.3 5.2 0.00011 27.1 6.3 64 16-79 140-211 (213)
347 PRK08649 inosine 5-monophospha 85.1 2.4 5.3E-05 31.0 4.9 40 17-57 176-215 (368)
348 TIGR00282 metallophosphoestera 85.0 2.3 5E-05 29.8 4.6 48 17-65 19-74 (266)
349 PF02662 FlpD: Methyl-viologen 85.0 1.9 4E-05 26.8 3.8 50 30-79 32-88 (124)
350 TIGR00433 bioB biotin syntheta 84.9 9.3 0.0002 26.3 7.6 72 3-74 211-292 (296)
351 COG0325 Predicted enzyme with 84.8 0.97 2.1E-05 31.2 2.6 63 1-65 161-227 (228)
352 TIGR00262 trpA tryptophan synt 84.8 5.5 0.00012 27.6 6.4 44 14-57 72-122 (256)
353 PRK01362 putative translaldola 84.5 6.2 0.00013 26.8 6.4 64 16-79 140-211 (214)
354 cd02071 MM_CoA_mut_B12_BD meth 84.5 3.4 7.4E-05 25.1 4.8 38 20-57 71-109 (122)
355 TIGR02663 nifX nitrogen fixati 84.3 6.1 0.00013 24.0 5.8 47 28-78 62-108 (119)
356 cd00377 ICL_PEPM Members of th 84.2 7.5 0.00016 26.6 6.8 63 14-77 55-134 (243)
357 cd04743 NPD_PKS 2-Nitropropane 84.2 1.3 2.9E-05 31.8 3.2 34 29-62 165-207 (320)
358 PF07071 DUF1341: Protein of u 84.1 2.1 4.5E-05 29.3 3.9 27 29-55 177-207 (218)
359 PF13714 PEP_mutase: Phosphoen 84.1 6.4 0.00014 27.1 6.4 60 15-80 178-237 (238)
360 PRK09196 fructose-1,6-bisphosp 84.1 6.4 0.00014 28.8 6.7 47 15-61 212-281 (347)
361 PRK12858 tagatose 1,6-diphosph 83.8 4.7 0.0001 29.3 5.8 44 18-62 231-281 (340)
362 cd02067 B12-binding B12 bindin 83.5 4.3 9.4E-05 24.2 4.9 40 17-56 68-108 (119)
363 TIGR03326 rubisco_III ribulose 83.3 11 0.00025 28.1 7.8 76 5-80 305-389 (412)
364 PRK06552 keto-hydroxyglutarate 83.2 3.3 7.2E-05 28.0 4.7 43 13-55 48-93 (213)
365 TIGR02708 L_lactate_ox L-lacta 83.1 9.9 0.00021 27.9 7.4 62 15-77 215-280 (367)
366 TIGR02317 prpB methylisocitrat 82.9 9.3 0.0002 27.1 7.0 47 15-62 184-234 (285)
367 TIGR02319 CPEP_Pphonmut carbox 82.9 11 0.00024 26.8 7.4 47 15-62 188-238 (294)
368 KOG4175|consensus 82.7 2.8 6.1E-05 29.0 4.1 41 21-62 199-240 (268)
369 PRK09140 2-dehydro-3-deoxy-6-p 82.4 4.1 8.8E-05 27.3 4.8 46 13-58 45-91 (206)
370 PRK07998 gatY putative fructos 82.4 8.5 0.00018 27.3 6.6 44 17-61 188-233 (283)
371 PLN02885 nicotinate phosphorib 82.2 2 4.3E-05 33.1 3.6 36 28-63 347-384 (545)
372 PF02310 B12-binding: B12 bind 82.2 4.3 9.2E-05 24.0 4.5 39 20-59 72-113 (121)
373 cd04727 pdxS PdxS is a subunit 82.1 11 0.00023 26.9 7.0 58 19-79 103-160 (283)
374 PRK07107 inosine 5-monophospha 81.1 4.1 8.9E-05 31.0 4.9 45 12-57 266-312 (502)
375 TIGR02320 PEP_mutase phosphoen 81.1 12 0.00026 26.5 7.0 36 27-62 209-245 (285)
376 PTZ00187 succinyl-CoA syntheta 80.9 1.9 4.2E-05 31.0 3.0 64 2-65 59-127 (317)
377 TIGR01334 modD putative molybd 80.7 7 0.00015 27.6 5.7 55 17-74 176-230 (277)
378 TIGR01304 IMP_DH_rel_2 IMP deh 80.6 4.8 0.0001 29.6 4.9 41 17-58 177-217 (369)
379 PRK13399 fructose-1,6-bisphosp 80.5 10 0.00023 27.7 6.6 46 16-61 213-281 (347)
380 PF00072 Response_reg: Respons 80.4 8.1 0.00018 21.8 5.1 42 15-56 57-99 (112)
381 PRK06464 phosphoenolpyruvate s 80.3 6.1 0.00013 31.7 5.8 55 7-61 718-777 (795)
382 TIGR01521 FruBisAldo_II_B fruc 80.3 9.6 0.00021 27.9 6.4 47 15-61 210-279 (347)
383 PRK12656 fructose-6-phosphate 80.2 12 0.00026 25.6 6.5 54 26-79 158-215 (222)
384 PF04476 DUF556: Protein of un 79.9 4.7 0.0001 28.0 4.5 49 29-77 180-234 (235)
385 PRK09240 thiH thiamine biosynt 79.9 3.7 8.1E-05 29.8 4.2 61 16-77 140-212 (371)
386 PRK00278 trpC indole-3-glycero 79.7 11 0.00024 26.0 6.4 48 15-63 98-146 (260)
387 COG2086 FixA Electron transfer 79.4 12 0.00025 26.3 6.4 69 12-80 38-110 (260)
388 cd07382 MPP_DR1281 Deinococcus 78.9 7 0.00015 27.2 5.2 54 16-70 17-78 (255)
389 PF01212 Beta_elim_lyase: Beta 78.9 3.5 7.6E-05 29.0 3.8 48 8-57 138-192 (290)
390 COG2197 CitB Response regulato 78.8 9.1 0.0002 25.5 5.6 44 15-58 60-104 (211)
391 cd08206 RuBisCO_large_I_II_III 78.7 23 0.0005 26.5 8.1 52 29-80 337-391 (414)
392 PRK09426 methylmalonyl-CoA mut 78.6 14 0.0003 29.5 7.2 51 23-78 657-708 (714)
393 cd08205 RuBisCO_IV_RLP Ribulos 78.4 13 0.00027 27.2 6.6 64 12-75 296-366 (367)
394 cd03174 DRE_TIM_metallolyase D 78.4 11 0.00023 25.4 5.9 47 12-58 49-95 (265)
395 COG1433 Uncharacterized conser 78.2 13 0.00029 23.1 5.8 42 29-75 65-106 (121)
396 COG2185 Sbm Methylmalonyl-CoA 77.9 16 0.00034 23.5 6.8 56 18-79 81-139 (143)
397 cd08208 RLP_Photo Ribulose bis 77.9 20 0.00044 26.9 7.6 52 29-80 347-402 (424)
398 TIGR03581 EF_0839 conserved hy 77.9 2.4 5.2E-05 29.3 2.5 50 29-78 177-235 (236)
399 cd02068 radical_SAM_B12_BD B12 77.8 6.5 0.00014 23.7 4.3 41 16-57 55-97 (127)
400 PF01729 QRPTase_C: Quinolinat 77.8 9.9 0.00021 24.8 5.4 55 17-74 67-122 (169)
401 PRK12581 oxaloacetate decarbox 77.6 13 0.00028 28.3 6.6 63 13-75 68-143 (468)
402 COG1921 SelA Selenocysteine sy 77.6 9.6 0.00021 28.4 5.8 47 17-64 176-228 (395)
403 PRK07114 keto-hydroxyglutarate 77.5 6.4 0.00014 26.9 4.6 44 13-57 50-98 (222)
404 cd06533 Glyco_transf_WecG_TagA 77.4 9.2 0.0002 24.7 5.1 44 14-57 56-106 (171)
405 cd03315 MLE_like Muconate lact 77.4 17 0.00036 24.8 6.7 53 8-61 160-214 (265)
406 cd03319 L-Ala-DL-Glu_epimerase 77.3 17 0.00037 25.4 6.8 53 9-62 209-263 (316)
407 PF03841 SelA: L-seryl-tRNA se 77.3 2.1 4.7E-05 31.4 2.3 48 16-64 158-218 (367)
408 COG3684 LacD Tagatose-1,6-bisp 77.0 11 0.00024 27.0 5.6 49 13-62 215-268 (306)
409 smart00876 BATS Biotin and Thi 76.9 12 0.00027 21.8 6.6 52 20-71 29-85 (94)
410 PRK10840 transcriptional regul 76.7 9.7 0.00021 24.6 5.2 43 15-57 66-109 (216)
411 PLN02561 triosephosphate isome 76.6 9.3 0.0002 26.6 5.3 36 28-63 203-239 (253)
412 TIGR02351 thiH thiazole biosyn 76.5 17 0.00036 26.3 6.7 61 16-77 139-211 (366)
413 PRK08508 biotin synthase; Prov 76.3 17 0.00038 25.2 6.6 53 23-75 213-269 (279)
414 PRK07455 keto-hydroxyglutarate 76.0 6.9 0.00015 25.7 4.3 45 14-58 48-92 (187)
415 PRK12653 fructose-6-phosphate 75.5 17 0.00036 24.8 6.2 53 27-79 157-213 (220)
416 PRK12342 hypothetical protein; 75.0 22 0.00048 24.7 6.8 68 12-79 36-107 (254)
417 PRK06256 biotin synthase; Vali 74.9 17 0.00038 25.6 6.4 55 20-74 261-318 (336)
418 TIGR00696 wecB_tagA_cpsF bacte 74.5 13 0.00029 24.3 5.3 44 14-57 58-107 (177)
419 PRK14566 triosephosphate isome 74.5 12 0.00025 26.3 5.3 41 29-69 212-253 (260)
420 cd08212 RuBisCO_large_I Ribulo 74.4 7.7 0.00017 29.3 4.6 50 30-79 351-403 (450)
421 COG1891 Uncharacterized protei 74.2 10 0.00022 25.7 4.7 34 29-62 180-213 (235)
422 PRK12655 fructose-6-phosphate 74.2 21 0.00046 24.3 6.4 52 28-79 158-213 (220)
423 PRK07084 fructose-bisphosphate 74.0 17 0.00038 26.3 6.2 47 15-61 203-272 (321)
424 PRK09549 mtnW 2,3-diketo-5-met 74.0 25 0.00054 26.3 7.2 52 29-80 324-378 (407)
425 PRK08444 hypothetical protein; 73.9 9.7 0.00021 27.6 5.0 46 16-61 115-173 (353)
426 cd08210 RLP_RrRLP Ribulose bis 73.7 13 0.00028 27.2 5.6 66 11-76 291-363 (364)
427 cd01985 ETF The electron trans 73.5 21 0.00045 22.8 6.9 67 12-78 17-88 (181)
428 PRK12738 kbaY tagatose-bisphos 73.2 22 0.00047 25.2 6.5 46 15-61 189-236 (286)
429 TIGR01501 MthylAspMutase methy 73.0 21 0.00045 22.5 6.8 49 23-77 76-132 (134)
430 PLN02623 pyruvate kinase 73.0 24 0.00051 27.7 7.0 38 41-78 401-438 (581)
431 PHA02594 nadV nicotinamide pho 72.9 4.9 0.00011 30.5 3.3 35 28-62 333-375 (470)
432 PLN02347 GMP synthetase 72.5 7.7 0.00017 29.8 4.3 72 5-76 207-282 (536)
433 PRK03359 putative electron tra 72.2 30 0.00066 24.1 7.1 68 12-79 37-110 (256)
434 PRK11320 prpB 2-methylisocitra 72.1 30 0.00066 24.6 7.0 47 15-62 189-239 (292)
435 TIGR01417 PTS_I_fam phosphoeno 71.9 10 0.00022 29.3 4.9 57 5-61 469-529 (565)
436 TIGR03332 salvage_mtnW 2,3-dik 71.4 39 0.00084 25.3 7.7 51 30-80 330-383 (407)
437 cd02808 GltS_FMN Glutamate syn 71.3 14 0.00031 27.1 5.4 45 15-59 200-247 (392)
438 PRK13475 ribulose bisphosphate 71.2 14 0.0003 27.9 5.3 51 30-80 363-417 (443)
439 PRK04147 N-acetylneuraminate l 71.2 32 0.00069 23.9 8.7 73 4-76 44-125 (293)
440 PRK06096 molybdenum transport 71.2 18 0.00038 25.7 5.6 55 16-73 176-230 (284)
441 PF04481 DUF561: Protein of un 71.1 14 0.0003 25.7 4.9 31 28-59 60-90 (242)
442 TIGR01858 tag_bisphos_ald clas 71.0 24 0.00053 24.9 6.3 46 15-61 187-234 (282)
443 PF01645 Glu_synthase: Conserv 70.9 5.6 0.00012 29.2 3.2 51 9-59 252-305 (368)
444 PRK08385 nicotinate-nucleotide 70.9 16 0.00035 25.8 5.4 53 18-73 171-223 (278)
445 TIGR01418 PEP_synth phosphoeno 70.9 12 0.00026 30.0 5.2 56 6-61 710-770 (782)
446 cd00408 DHDPS-like Dihydrodipi 70.5 11 0.00025 25.7 4.5 52 6-59 152-203 (281)
447 cd00408 DHDPS-like Dihydrodipi 70.4 28 0.00061 23.8 6.5 74 5-78 38-120 (281)
448 PRK12330 oxaloacetate decarbox 70.3 14 0.0003 28.3 5.2 62 13-74 60-134 (499)
449 PRK11613 folP dihydropteroate 70.3 12 0.00025 26.6 4.6 32 21-54 83-114 (282)
450 PRK04180 pyridoxal biosynthesi 70.0 34 0.00074 24.6 6.9 59 18-79 111-169 (293)
451 PRK03620 5-dehydro-4-deoxygluc 70.0 12 0.00026 26.3 4.6 55 4-59 157-213 (303)
452 PRK02261 methylaspartate mutas 70.0 24 0.00052 22.1 6.4 53 20-78 75-135 (137)
453 COG0269 SgbH 3-hexulose-6-phos 69.9 14 0.00029 25.5 4.6 45 14-58 41-88 (217)
454 cd04724 Tryptophan_synthase_al 69.8 26 0.00057 23.8 6.2 42 15-57 63-111 (242)
455 cd00852 NifB NifB belongs to a 69.7 20 0.00043 21.0 5.7 52 18-73 54-105 (106)
456 PRK02227 hypothetical protein; 69.6 15 0.00032 25.6 4.9 50 29-78 180-234 (238)
457 PRK09195 gatY tagatose-bisphos 69.6 27 0.00058 24.8 6.3 46 15-61 189-236 (284)
458 PRK08195 4-hyroxy-2-oxovalerat 69.4 38 0.00082 24.4 7.1 46 16-61 64-112 (337)
459 cd07943 DRE_TIM_HOA 4-hydroxy- 69.4 25 0.00055 24.0 6.1 44 15-58 60-106 (263)
460 PF06057 VirJ: Bacterial virul 69.3 10 0.00022 25.5 3.9 50 32-81 8-62 (192)
461 TIGR03249 KdgD 5-dehydro-4-deo 69.2 14 0.0003 25.8 4.8 55 4-59 155-211 (296)
462 PRK11320 prpB 2-methylisocitra 69.0 39 0.00084 24.1 7.0 62 14-77 64-143 (292)
463 cd00945 Aldolase_Class_I Class 68.8 26 0.00057 22.0 6.1 37 41-77 69-107 (201)
464 TIGR03682 arCOG04112 arCOG0411 68.8 8 0.00017 27.6 3.5 51 6-59 220-271 (308)
465 COG1938 Archaeal enzymes of AT 68.6 32 0.00069 24.0 6.3 62 18-80 136-199 (244)
466 cd08211 RuBisCO_large_II Ribul 68.6 17 0.00037 27.4 5.3 51 30-80 362-416 (439)
467 TIGR02660 nifV_homocitr homoci 68.4 42 0.00092 24.3 7.3 47 12-58 47-93 (365)
468 PRK12857 fructose-1,6-bisphosp 68.3 32 0.00069 24.4 6.5 46 15-61 189-236 (284)
469 PRK12737 gatY tagatose-bisphos 67.9 32 0.00069 24.4 6.4 46 15-61 189-236 (284)
470 PRK07709 fructose-bisphosphate 67.8 31 0.00067 24.5 6.3 46 15-61 190-237 (285)
471 PRK08610 fructose-bisphosphate 67.5 31 0.00067 24.5 6.3 45 16-61 191-237 (286)
472 PRK05848 nicotinate-nucleotide 67.5 19 0.00041 25.4 5.1 41 15-56 167-208 (273)
473 PF00701 DHDPS: Dihydrodipicol 67.3 9.6 0.00021 26.4 3.6 56 4-61 154-209 (289)
474 TIGR02618 tyr_phenol_ly tyrosi 67.3 26 0.00056 26.6 6.1 35 7-42 183-217 (450)
475 PRK10128 2-keto-3-deoxy-L-rham 67.1 8.9 0.00019 26.8 3.5 53 6-60 185-240 (267)
476 PRK04311 selenocysteine syntha 67.0 18 0.00039 27.2 5.2 43 14-57 236-290 (464)
477 PRK06256 biotin synthase; Vali 66.6 12 0.00026 26.4 4.1 41 16-57 128-169 (336)
478 COG2008 GLY1 Threonine aldolas 66.4 13 0.00028 27.2 4.2 67 8-77 143-227 (342)
479 PRK00955 hypothetical protein; 66.4 16 0.00035 28.8 5.0 49 9-58 103-165 (620)
480 COG1504 Uncharacterized conser 66.3 5.6 0.00012 24.8 2.0 25 38-62 49-73 (121)
481 CHL00040 rbcL ribulose-1,5-bis 66.2 15 0.00033 28.0 4.7 50 30-79 374-426 (475)
482 PRK09282 pyruvate carboxylase 66.2 20 0.00044 27.9 5.5 58 13-70 59-129 (592)
483 cd00959 DeoC 2-deoxyribose-5-p 66.2 26 0.00055 23.1 5.4 63 14-76 101-170 (203)
484 cd00956 Transaldolase_FSA Tran 66.2 37 0.00081 22.8 6.9 65 13-79 87-153 (211)
485 COG0159 TrpA Tryptophan syntha 66.0 35 0.00077 24.1 6.2 46 13-58 78-130 (265)
486 PRK12376 putative translaldola 65.8 32 0.0007 23.7 5.9 62 18-79 160-230 (236)
487 PRK09198 putative nicotinate p 65.7 8.8 0.00019 29.1 3.4 36 28-63 328-371 (463)
488 TIGR00167 cbbA ketose-bisphosp 65.4 35 0.00075 24.2 6.2 45 16-61 194-240 (288)
489 COG0329 DapA Dihydrodipicolina 65.3 46 0.00099 23.5 8.5 75 4-78 44-127 (299)
490 TIGR03217 4OH_2_O_val_ald 4-hy 64.8 50 0.0011 23.8 7.0 47 16-62 63-112 (333)
491 PRK08114 cystathionine beta-ly 64.7 18 0.00038 26.7 4.7 43 15-57 164-207 (395)
492 TIGR02313 HpaI-NOT-DapA 2,4-di 64.6 18 0.0004 25.3 4.7 28 31-59 181-208 (294)
493 cd07937 DRE_TIM_PC_TC_5S Pyruv 64.4 22 0.00047 24.7 5.0 46 13-58 54-112 (275)
494 CHL00200 trpA tryptophan synth 64.4 33 0.00072 23.9 5.9 43 15-58 78-127 (263)
495 cd00951 KDGDH 5-dehydro-4-deox 64.3 19 0.00042 25.1 4.7 54 5-59 151-206 (289)
496 cd00853 NifX NifX belongs to a 64.2 26 0.00057 20.3 4.9 42 28-73 60-101 (102)
497 PRK08508 biotin synthase; Prov 64.2 13 0.00027 25.9 3.8 58 18-75 79-145 (279)
498 cd00947 TBP_aldolase_IIB Tagat 63.6 41 0.0009 23.7 6.3 46 15-61 183-230 (276)
499 TIGR00433 bioB biotin syntheta 63.2 21 0.00046 24.4 4.8 42 17-59 100-142 (296)
500 PRK04208 rbcL ribulose bisopho 63.2 22 0.00047 27.1 5.0 51 30-80 367-420 (468)
No 1
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=99.93 E-value=2.2e-26 Score=155.10 Aligned_cols=79 Identities=41% Similarity=0.683 Sum_probs=74.0
Q ss_pred CccCCCCCCCCCCcchHHHHHHHHHhCC---CCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHHH
Q psy11601 1 MTVEPGFGGQKFMQDMMPKVKWLRENYP---TLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINCPDRIQAISTLKSSV 77 (82)
Q Consensus 1 m~v~pG~~gq~~~~~~~~ki~~~~~~~~---~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~~ 77 (82)
|||||||+||+|+|++++||+++|++.. ++.|+|||||+.+|++++.++|||.+|+||++|+.+|+++.+++++..+
T Consensus 138 MsVnPGfgGQ~Fi~~~l~Ki~~lr~~~~~~~~~~IeVDGGI~~~t~~~~~~AGad~~VaGSalF~~~d~~~~i~~~~~~~ 217 (220)
T COG0036 138 MSVNPGFGGQKFIPEVLEKIRELRAMIDERLDILIEVDGGINLETIKQLAAAGADVFVAGSALFGADDYKATIRELRGEL 217 (220)
T ss_pred EeECCCCcccccCHHHHHHHHHHHHHhcccCCeEEEEeCCcCHHHHHHHHHcCCCEEEEEEEEeCCccHHHHHHHHHHHh
Confidence 8999999999999999999999999865 6789999999999999999999999999999999999999999998876
Q ss_pred HH
Q psy11601 78 QK 79 (82)
Q Consensus 78 ~~ 79 (82)
.+
T Consensus 218 ~~ 219 (220)
T COG0036 218 LK 219 (220)
T ss_pred hc
Confidence 53
No 2
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=99.92 E-value=1.6e-25 Score=151.66 Aligned_cols=79 Identities=38% Similarity=0.720 Sum_probs=73.4
Q ss_pred CccCCCCCCCCCCcchHHHHHHHHHh----CCCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHH
Q psy11601 1 MTVEPGFGGQKFMQDMMPKVKWLREN----YPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINCPDRIQAISTLKSS 76 (82)
Q Consensus 1 m~v~pG~~gq~~~~~~~~ki~~~~~~----~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~ 76 (82)
|||+|||+||+|.|+.++||++++++ .+++.|+|||||+.+|++.+.++|||.+|+||+||+++|++++++++++.
T Consensus 139 MtV~PGf~GQ~fi~~~l~KI~~l~~~~~~~~~~~~IeVDGGI~~eti~~l~~aGaDi~V~GSaiF~~~d~~~~~~~lr~~ 218 (223)
T PRK08745 139 MSVNPGFGGQAFIPSALDKLRAIRKKIDALGKPIRLEIDGGVKADNIGAIAAAGADTFVAGSAIFNAPDYAQVIAQMRAA 218 (223)
T ss_pred EEECCCCCCccccHHHHHHHHHHHHHHHhcCCCeeEEEECCCCHHHHHHHHHcCCCEEEEChhhhCCCCHHHHHHHHHHH
Confidence 89999999999999999999999886 33578999999999999999999999999999999988999999999987
Q ss_pred HHH
Q psy11601 77 VQK 79 (82)
Q Consensus 77 ~~~ 79 (82)
+..
T Consensus 219 ~~~ 221 (223)
T PRK08745 219 VAA 221 (223)
T ss_pred HHh
Confidence 653
No 3
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=99.92 E-value=6.7e-25 Score=149.06 Aligned_cols=77 Identities=19% Similarity=0.303 Sum_probs=71.6
Q ss_pred CccCCCCCCCCCCcchHHHHHHHHHh----CCCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHH
Q psy11601 1 MTVEPGFGGQKFMQDMMPKVKWLREN----YPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINCPDRIQAISTLKSS 76 (82)
Q Consensus 1 m~v~pG~~gq~~~~~~~~ki~~~~~~----~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~ 76 (82)
|||+|||+||+|.+.+++||++++++ .+++.|+|||||+.+|++.+.++|||++|+||++|+.+|+++.+++|+..
T Consensus 147 MtV~PGfgGQ~f~~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~~~ti~~l~~aGaD~~V~GSalF~~~d~~~~i~~l~~~ 226 (228)
T PRK08091 147 LTLDPRTGTKAPSDLILDRVIQVENRLGNRRVEKLISIDGSMTLELASYLKQHQIDWVVSGSALFSQGELKTTLKEWKSS 226 (228)
T ss_pred EEECCCCCCccccHHHHHHHHHHHHHHHhcCCCceEEEECCCCHHHHHHHHHCCCCEEEEChhhhCCCCHHHHHHHHHHh
Confidence 89999999999999999999999875 34578999999999999999999999999999999988999999999876
Q ss_pred H
Q psy11601 77 V 77 (82)
Q Consensus 77 ~ 77 (82)
+
T Consensus 227 ~ 227 (228)
T PRK08091 227 L 227 (228)
T ss_pred h
Confidence 5
No 4
>PRK08005 epimerase; Validated
Probab=99.91 E-value=7.3e-25 Score=147.38 Aligned_cols=74 Identities=32% Similarity=0.443 Sum_probs=69.3
Q ss_pred CccCCCCCCCCCCcchHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHH
Q psy11601 1 MTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINCPDRIQAISTLK 74 (82)
Q Consensus 1 m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~ 74 (82)
|||+|||+||+|.|++++||++++++.+...|+|||||+.+|++.+.++|||.+|+||+||+.+|+++.++.|-
T Consensus 135 MsV~PGf~GQ~f~~~~~~KI~~l~~~~~~~~I~VDGGI~~~~i~~l~~aGad~~V~GsaiF~~~d~~~~~~~~~ 208 (210)
T PRK08005 135 MTSEPDGRGQQFIAAMCEKVSQSREHFPAAECWADGGITLRAARLLAAAGAQHLVIGRALFTTANYDVTLSQFT 208 (210)
T ss_pred EEecCCCccceecHHHHHHHHHHHHhcccCCEEEECCCCHHHHHHHHHCCCCEEEEChHhhCCCCHHHHHHHHh
Confidence 89999999999999999999999998776789999999999999999999999999999999888888877663
No 5
>PRK14057 epimerase; Provisional
Probab=99.91 E-value=1.3e-24 Score=149.38 Aligned_cols=78 Identities=19% Similarity=0.325 Sum_probs=72.1
Q ss_pred CccCCCCCCCCCCcchHHHHHHHHHh----CCCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHH
Q psy11601 1 MTVEPGFGGQKFMQDMMPKVKWLREN----YPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINCPDRIQAISTLKSS 76 (82)
Q Consensus 1 m~v~pG~~gq~~~~~~~~ki~~~~~~----~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~ 76 (82)
|||+|||+||+|.|++++||++++++ .+++.|+|||||+.+|++++.++|||++|+||++|+.+|+++.+++|++.
T Consensus 161 MtV~PGfgGQ~Fi~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~~~ti~~l~~aGad~~V~GSalF~~~d~~~~i~~l~~~ 240 (254)
T PRK14057 161 LAVNPGYGSKMRSSDLHERVAQLLCLLGDKREGKIIVIDGSLTQDQLPSLIAQGIDRVVSGSALFRDDRLVENTRSWRAM 240 (254)
T ss_pred EEECCCCCchhccHHHHHHHHHHHHHHHhcCCCceEEEECCCCHHHHHHHHHCCCCEEEEChHhhCCCCHHHHHHHHHHH
Confidence 89999999999999999999998875 23588999999999999999999999999999999988999999999876
Q ss_pred HH
Q psy11601 77 VQ 78 (82)
Q Consensus 77 ~~ 78 (82)
+.
T Consensus 241 ~~ 242 (254)
T PRK14057 241 FK 242 (254)
T ss_pred Hh
Confidence 54
No 6
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=99.91 E-value=9.4e-25 Score=147.60 Aligned_cols=80 Identities=36% Similarity=0.684 Sum_probs=74.6
Q ss_pred CccCCCCCCCCCCcchHHHHHHHHHhCC----CCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHH
Q psy11601 1 MTVEPGFGGQKFMQDMMPKVKWLRENYP----TLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINCPDRIQAISTLKSS 76 (82)
Q Consensus 1 m~v~pG~~gq~~~~~~~~ki~~~~~~~~----~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~ 76 (82)
|||+|||+||+|.|..++||+++++..+ +++|+|||||+++|++.+.++|||++|+||+||+++|++++++++++.
T Consensus 135 MtV~PGfgGq~fi~~~lekI~~l~~~~~~~~~~~~I~vdGGI~~eni~~l~~aGAd~vVvGSaIf~~~d~~~~i~~l~~~ 214 (220)
T PRK08883 135 MSVNPGFGGQSFIPHTLDKLRAVRKMIDESGRDIRLEIDGGVKVDNIREIAEAGADMFVAGSAIFGQPDYKAVIDEMRAE 214 (220)
T ss_pred EEecCCCCCceecHhHHHHHHHHHHHHHhcCCCeeEEEECCCCHHHHHHHHHcCCCEEEEeHHHhCCCCHHHHHHHHHHH
Confidence 8999999999999999999999988642 589999999999999999999999999999999999999999999998
Q ss_pred HHHh
Q psy11601 77 VQKY 80 (82)
Q Consensus 77 ~~~~ 80 (82)
+++.
T Consensus 215 ~~~~ 218 (220)
T PRK08883 215 LAKV 218 (220)
T ss_pred HHhc
Confidence 8753
No 7
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=99.90 E-value=5.5e-24 Score=144.70 Aligned_cols=79 Identities=33% Similarity=0.524 Sum_probs=71.7
Q ss_pred CccCCCCCCCCCCcchHHHHHHHHHhC----CCCcEEEEcCCCcccHHHHHHcCCCEEEEec-cccC-CCCHHHHHHHHH
Q psy11601 1 MTVEPGFGGQKFMQDMMPKVKWLRENY----PTLNIEVDGGVGPNTIDECAKAGANWIVSGT-AVIN-CPDRIQAISTLK 74 (82)
Q Consensus 1 m~v~pG~~gq~~~~~~~~ki~~~~~~~----~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs-~i~~-~~d~~~~~~~l~ 74 (82)
|||+|||+||+|.|++++||++++++. +++.|+|||||+.+|+.++.++|||.+|+|| +||+ .+|+++.++.++
T Consensus 137 MsV~PGf~GQ~fi~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~~~~i~~~~~aGad~~V~Gss~iF~~~~d~~~~i~~l~ 216 (229)
T PRK09722 137 MTVDPGFAGQPFIPEMLDKIAELKALRERNGLEYLIEVDGSCNQKTYEKLMEAGADVFIVGTSGLFNLDEDIDEAWDIMT 216 (229)
T ss_pred EEEcCCCcchhccHHHHHHHHHHHHHHHhcCCCeEEEEECCCCHHHHHHHHHcCCCEEEEChHHHcCCCCCHHHHHHHHH
Confidence 899999999999999999999999752 3577999999999999999999999999995 5998 578999999999
Q ss_pred HHHHH
Q psy11601 75 SSVQK 79 (82)
Q Consensus 75 ~~~~~ 79 (82)
+.+++
T Consensus 217 ~~~~~ 221 (229)
T PRK09722 217 AQIEA 221 (229)
T ss_pred HHHHH
Confidence 87764
No 8
>KOG3111|consensus
Probab=99.90 E-value=4.6e-24 Score=141.61 Aligned_cols=80 Identities=69% Similarity=1.131 Sum_probs=77.2
Q ss_pred CccCCCCCCCCCCcchHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHHHHHh
Q psy11601 1 MTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINCPDRIQAISTLKSSVQKY 80 (82)
Q Consensus 1 m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~~~~~ 80 (82)
|||+|||+||+|.++.+.|++.+|+.+|++.|++|||++++|+..++++|||.+|+||++|++.|+.+.++.|++...+.
T Consensus 141 MtVePGFGGQkFme~mm~KV~~lR~kyp~l~ievDGGv~~~ti~~~a~AGAN~iVaGsavf~a~d~~~vi~~lr~~v~~a 220 (224)
T KOG3111|consen 141 MTVEPGFGGQKFMEDMMPKVEWLREKYPNLDIEVDGGVGPSTIDKAAEAGANMIVAGSAVFGAADPSDVISLLRNSVEKA 220 (224)
T ss_pred EEecCCCchhhhHHHHHHHHHHHHHhCCCceEEecCCcCcchHHHHHHcCCCEEEecceeecCCCHHHHHHHHHHHHhhh
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999987654
No 9
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=99.89 E-value=5.9e-23 Score=139.23 Aligned_cols=82 Identities=63% Similarity=0.960 Sum_probs=77.7
Q ss_pred CccCCCCCCCCCCcchHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHHHHHh
Q psy11601 1 MTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINCPDRIQAISTLKSSVQKY 80 (82)
Q Consensus 1 m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~~~~~ 80 (82)
|+|+||++||+|.++.+++++++++..+++.|.|||||+++|++.+.++|||++|+||+||+++||+++++++++.+++.
T Consensus 145 m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~I~VdGGI~~~ti~~~~~aGad~iVvGsaI~~a~d~~~~~~~i~~~~~~~ 224 (228)
T PTZ00170 145 MTVEPGFGGQSFMHDMMPKVRELRKRYPHLNIQVDGGINLETIDIAADAGANVIVAGSSIFKAKDRKQAIELLRESVQKH 224 (228)
T ss_pred hhcccCCCCcEecHHHHHHHHHHHHhcccCeEEECCCCCHHHHHHHHHcCCCEEEEchHHhCCCCHHHHHHHHHHHHHHH
Confidence 89999999999999999999999998777899999999999999999999999999999999999999999999998876
Q ss_pred hC
Q psy11601 81 LS 82 (82)
Q Consensus 81 ~~ 82 (82)
.|
T Consensus 225 ~~ 226 (228)
T PTZ00170 225 LS 226 (228)
T ss_pred hh
Confidence 54
No 10
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=99.86 E-value=1.8e-22 Score=134.99 Aligned_cols=64 Identities=42% Similarity=0.776 Sum_probs=54.5
Q ss_pred CccCCCCCCCCCCcchHHHHHHHHHh----CCCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCCC
Q psy11601 1 MTVEPGFGGQKFMQDMMPKVKWLREN----YPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINCP 64 (82)
Q Consensus 1 m~v~pG~~gq~~~~~~~~ki~~~~~~----~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~~ 64 (82)
|||+|||+||+|.|++++||++++++ ++++.|+|||||+.+|++.+.++|||.+|+||++|+++
T Consensus 134 MsV~PG~~Gq~f~~~~~~KI~~l~~~~~~~~~~~~I~vDGGI~~~~~~~~~~aGad~~V~Gs~iF~~~ 201 (201)
T PF00834_consen 134 MSVEPGFGGQKFIPEVLEKIRELRKLIPENGLDFEIEVDGGINEENIKQLVEAGADIFVAGSAIFKAD 201 (201)
T ss_dssp ESS-TTTSSB--HGGHHHHHHHHHHHHHHHTCGSEEEEESSESTTTHHHHHHHT--EEEESHHHHTS-
T ss_pred EEecCCCCcccccHHHHHHHHHHHHHHHhcCCceEEEEECCCCHHHHHHHHHcCCCEEEECHHHhCCC
Confidence 89999999999999999999999875 34699999999999999999999999999999999864
No 11
>PLN02334 ribulose-phosphate 3-epimerase
Probab=99.84 E-value=9.4e-21 Score=128.03 Aligned_cols=79 Identities=62% Similarity=1.017 Sum_probs=75.0
Q ss_pred CccCCCCCCCCCCcchHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHHHHH
Q psy11601 1 MTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINCPDRIQAISTLKSSVQK 79 (82)
Q Consensus 1 m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~~~~ 79 (82)
|+|+||+++|+|.+..+++++++++..+++||+|||||+++|+.++.++|||++|+||+||+++||++++++|++.+++
T Consensus 146 ~~v~pg~~~~~~~~~~~~~i~~~~~~~~~~~I~a~GGI~~e~i~~l~~aGad~vvvgsai~~~~d~~~~~~~l~~~~~~ 224 (229)
T PLN02334 146 MSVEPGFGGQSFIPSMMDKVRALRKKYPELDIEVDGGVGPSTIDKAAEAGANVIVAGSAVFGAPDYAEVISGLRASVEK 224 (229)
T ss_pred EEEecCCCccccCHHHHHHHHHHHHhCCCCcEEEeCCCCHHHHHHHHHcCCCEEEEChHHhCCCCHHHHHHHHHHHHHH
Confidence 6899999999999999999999999876789999999999999999999999999999999999999999999988775
No 12
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=99.73 E-value=1.5e-17 Score=110.11 Aligned_cols=75 Identities=20% Similarity=0.325 Sum_probs=70.3
Q ss_pred ccCCCCCCCCCCcchHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHH
Q psy11601 2 TVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINCPDRIQAISTLKSS 76 (82)
Q Consensus 2 ~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~ 76 (82)
+++|||.+|.|.+..+++++++++..+.++++++|||+.+|+.++.++|+|++++||+||+++|+++.++.|++.
T Consensus 131 ~~~pg~~~~~~~~~~~~~i~~l~~~~~~~~i~v~GGI~~~n~~~~~~~Ga~~v~vGsai~~~~d~~~~~~~l~~~ 205 (206)
T TIGR03128 131 GVHTGLDEQAKGQNPFEDLQTILKLVKEARVAVAGGINLDTIPDVIKLGPDIVIVGGAITKAADPAEAARQIRKL 205 (206)
T ss_pred EEcCCcCcccCCCCCHHHHHHHHHhcCCCcEEEECCcCHHHHHHHHHcCCCEEEEeehhcCCCCHHHHHHHHHhh
Confidence 578999999999999999999999877788999999999999999999999999999999999999999998865
No 13
>PRK13813 orotidine 5'-phosphate decarboxylase; Provisional
Probab=99.70 E-value=3.1e-17 Score=109.55 Aligned_cols=78 Identities=22% Similarity=0.428 Sum_probs=70.5
Q ss_pred CccCCCCCCCCCCcchHHHHHHHHHhCCC-CcEEEEcCCCccc--HHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHHH
Q psy11601 1 MTVEPGFGGQKFMQDMMPKVKWLRENYPT-LNIEVDGGVGPNT--IDECAKAGANWIVSGTAVINCPDRIQAISTLKSSV 77 (82)
Q Consensus 1 m~v~pG~~gq~~~~~~~~ki~~~~~~~~~-~~i~~dGGI~~~n--i~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~~ 77 (82)
|+++||++||.|.+..+++|+++++..+. +.+ +||||+.++ +..+.++|||++|+||+||+++||.+.++.|++.+
T Consensus 134 m~~e~G~~g~~~~~~~~~~i~~l~~~~~~~~~i-vdgGI~~~g~~~~~~~~aGad~iV~Gr~I~~~~d~~~~~~~l~~~~ 212 (215)
T PRK13813 134 LAQEAGAFGVVAPATRPERVRYIRSRLGDELKI-ISPGIGAQGGKAADAIKAGADYVIVGRSIYNAADPREAAKAINEEI 212 (215)
T ss_pred HHHHhCCCeEEECCCcchhHHHHHHhcCCCcEE-EeCCcCCCCCCHHHHHHcCCCEEEECcccCCCCCHHHHHHHHHHHH
Confidence 78999999999999999999999887543 456 999999985 99999999999999999999999999999999887
Q ss_pred HH
Q psy11601 78 QK 79 (82)
Q Consensus 78 ~~ 79 (82)
++
T Consensus 213 ~~ 214 (215)
T PRK13813 213 RG 214 (215)
T ss_pred hc
Confidence 54
No 14
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=99.70 E-value=3.6e-17 Score=108.90 Aligned_cols=77 Identities=45% Similarity=0.846 Sum_probs=69.2
Q ss_pred CccCCCCCCCCCCcchHHHHHHHHHhCC----CCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHH
Q psy11601 1 MTVEPGFGGQKFMQDMMPKVKWLRENYP----TLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINCPDRIQAISTLKSS 76 (82)
Q Consensus 1 m~v~pG~~gq~~~~~~~~ki~~~~~~~~----~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~ 76 (82)
|+++||..||.|.+..+++++++++..+ +++++++|||+++|+.++.++|+|++++||+||+++||++++++|++.
T Consensus 138 ~~~~~g~tg~~~~~~~~~~i~~~~~~~~~~~~~~~i~v~GGI~~~nv~~l~~~GaD~vvvgSai~~~~d~~~~~~~~~~~ 217 (220)
T PRK05581 138 MSVNPGFGGQKFIPEVLEKIRELRKLIDERGLDILIEVDGGINADNIKECAEAGADVFVAGSAVFGAPDYKEAIDSLRAE 217 (220)
T ss_pred EEECCCCCcccccHHHHHHHHHHHHHHHhcCCCceEEEECCCCHHHHHHHHHcCCCEEEEChhhhCCCCHHHHHHHHHHH
Confidence 5678999999999999999999887633 256889999999999999999999999999999999999999999876
Q ss_pred H
Q psy11601 77 V 77 (82)
Q Consensus 77 ~ 77 (82)
+
T Consensus 218 ~ 218 (220)
T PRK05581 218 L 218 (220)
T ss_pred h
Confidence 5
No 15
>PRK13306 ulaD 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional
Probab=99.68 E-value=1.1e-16 Score=107.88 Aligned_cols=78 Identities=19% Similarity=0.308 Sum_probs=72.7
Q ss_pred CccCCCCCCCCCCcchHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHHHHHh
Q psy11601 1 MTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINCPDRIQAISTLKSSVQKY 80 (82)
Q Consensus 1 m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~~~~~ 80 (82)
|+++||++||.|.|+.+++|+++++. ++.+.|+|||++++++.+.+.|||.+|+|++||+++||.++++++++.++++
T Consensus 137 ~a~~~~~~G~v~s~~~~~~ir~~~~~--~~~i~V~gGI~~~~~~~~~~~~ad~~VvGr~I~~a~dp~~a~~~i~~~i~~~ 214 (216)
T PRK13306 137 RSRDAQLAGVAWGEKDLNKVKKLSDM--GFKVSVTGGLVVEDLKLFKGIPVKTFIAGRAIRGAADPAAAARAFKDEIAKY 214 (216)
T ss_pred hhhhhhhcCCCCCHHHHHHHHHHhcC--CCeEEEcCCCCHhhHHHHhcCCCCEEEECCcccCCCCHHHHHHHHHHHHHhc
Confidence 68999999999999999999999874 4679999999999999999999999999999999999999999999998764
No 16
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=99.68 E-value=7.8e-17 Score=106.37 Aligned_cols=74 Identities=42% Similarity=0.732 Sum_probs=66.3
Q ss_pred CccCCCCCCCCCCcchHHHHHHHHHhC----CCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHH
Q psy11601 1 MTVEPGFGGQKFMQDMMPKVKWLRENY----PTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINCPDRIQAISTLK 74 (82)
Q Consensus 1 m~v~pG~~gq~~~~~~~~ki~~~~~~~----~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~ 74 (82)
|+++||+.|+.|.+..+++++++++.. +++|++++|||+++|++++.+.|+|++++||+||+++||++++++++
T Consensus 133 ~~~~~g~tg~~~~~~~~~~i~~i~~~~~~~~~~~~i~v~GGI~~env~~l~~~gad~iivgsai~~~~d~~~~~~~~~ 210 (210)
T TIGR01163 133 MSVNPGFGGQKFIPDTLEKIREVRKMIDENGLSILIEVDGGVNDDNARELAEAGADILVAGSAIFGADDYKEVIRSLR 210 (210)
T ss_pred EEEcCCCCcccccHHHHHHHHHHHHHHHhcCCCceEEEECCcCHHHHHHHHHcCCCEEEEChHHhCCCCHHHHHHHhC
Confidence 467899999999999999999888753 34789999999999999999999999999999999999999988763
No 17
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=99.64 E-value=2.9e-16 Score=103.50 Aligned_cols=74 Identities=47% Similarity=0.783 Sum_probs=66.9
Q ss_pred CccCCCCCCCCCCcchHHHHHHHHHhCC----CCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHH
Q psy11601 1 MTVEPGFGGQKFMQDMMPKVKWLRENYP----TLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINCPDRIQAISTLK 74 (82)
Q Consensus 1 m~v~pG~~gq~~~~~~~~ki~~~~~~~~----~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~ 74 (82)
|+++||.+|+.|.+..++++++++++.+ ++|++++|||+++|+.++.++|+|++++||++|+.+||.+++++++
T Consensus 134 ~~~~~g~tg~~~~~~~~~~i~~~~~~~~~~~~~~pi~v~GGI~~env~~~~~~gad~iivgsai~~~~~~~~~~~~~~ 211 (211)
T cd00429 134 MSVNPGFGGQKFIPEVLEKIRKLRELIPENNLNLLIEVDGGINLETIPLLAEAGADVLVAGSALFGSDDYAEAIKELR 211 (211)
T ss_pred EEECCCCCCcccCHHHHHHHHHHHHHHHhcCCCeEEEEECCCCHHHHHHHHHcCCCEEEECHHHhCCCCHHHHHHHhC
Confidence 4678999999999999999999887643 5899999999999999999999999999999999999999988763
No 18
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=99.57 E-value=8.3e-15 Score=100.04 Aligned_cols=61 Identities=25% Similarity=0.340 Sum_probs=56.6
Q ss_pred CccCCCCCCCCCCcchHHHHHHHHHhCCCCcEEEEcCC-CcccHHHHHHcCCCEEEEeccccC
Q psy11601 1 MTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGV-GPNTIDECAKAGANWIVSGTAVIN 62 (82)
Q Consensus 1 m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~i~~dGGI-~~~ni~~~~~~Gad~vv~gs~i~~ 62 (82)
|+|+||++ ++|.++..++++++++..++.+|+++||| ++++++.+.++|||++++||++|+
T Consensus 158 msv~~~~g-~~~~~~~~~~i~~lr~~~~~~~i~v~gGI~~~e~i~~~~~~gaD~vvvGSai~~ 219 (244)
T PRK13125 158 YGLRPATG-VPLPVSVERNIKRVRNLVGNKYLVVGFGLDSPEDARDALSAGADGVVVGTAFIE 219 (244)
T ss_pred EEeCCCCC-CCchHHHHHHHHHHHHhcCCCCEEEeCCcCCHHHHHHHHHcCCCEEEECHHHHH
Confidence 68999995 58999999999999998766789999999 999999999999999999999986
No 19
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=99.56 E-value=1.1e-14 Score=95.90 Aligned_cols=70 Identities=24% Similarity=0.350 Sum_probs=61.4
Q ss_pred ccCCCCCCCCC-CcchHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCCCCHHHHHHH
Q psy11601 2 TVEPGFGGQKF-MQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINCPDRIQAIST 72 (82)
Q Consensus 2 ~v~pG~~gq~~-~~~~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~ 72 (82)
.++|++.++.+ .+...++++++++. +++|++++|||+++|+.++.++|||++++||+||+++||++.+++
T Consensus 131 ~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~i~~~GGI~~~~i~~~~~~Gad~vvvGsai~~~~d~~~~~~~ 201 (202)
T cd04726 131 ILHRGIDAQAAGGWWPEDDLKKVKKL-LGVKVAVAGGITPDTLPEFKKAGADIVIVGRAITGAADPAEAARE 201 (202)
T ss_pred EEcCcccccccCCCCCHHHHHHHHhh-cCCCEEEECCcCHHHHHHHHhcCCCEEEEeehhcCCCCHHHHHhc
Confidence 34688877777 57788999998886 479999999999999999999999999999999999999888765
No 20
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=99.54 E-value=2.3e-14 Score=103.88 Aligned_cols=72 Identities=22% Similarity=0.383 Sum_probs=64.0
Q ss_pred cCCCCCCCCCCcchHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHHHHH
Q psy11601 3 VEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINCPDRIQAISTLKSSVQK 79 (82)
Q Consensus 3 v~pG~~gq~~~~~~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~~~~ 79 (82)
++|| +| +..+++|+++++..++++|+++|||+.+|++++.++|||++|+||+||+++||++++++|++.++.
T Consensus 309 vdp~--~~---~~~~~kI~~ikk~~~~~~I~VdGGI~~eti~~l~~aGADivVVGsaIf~a~Dp~~aak~l~~~i~~ 380 (391)
T PRK13307 309 IDEE--GT---EHAWGNIKEIKKAGGKILVAVAGGVRVENVEEALKAGADILVVGRAITKSKDVRRAAEDFLNKLKP 380 (391)
T ss_pred cCCC--cc---cchHHHHHHHHHhCCCCcEEEECCcCHHHHHHHHHcCCCEEEEeHHHhCCCCHHHHHHHHHHhhcc
Confidence 6676 33 457789999998767899999999999999999999999999999999999999999999988754
No 21
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=99.52 E-value=1.1e-13 Score=91.44 Aligned_cols=77 Identities=18% Similarity=0.217 Sum_probs=64.9
Q ss_pred cCCCCCCCCCCcc-hHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHHHHH
Q psy11601 3 VEPGFGGQKFMQD-MMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINCPDRIQAISTLKSSVQK 79 (82)
Q Consensus 3 v~pG~~gq~~~~~-~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~~~~ 79 (82)
+.|+...+...+. .+++++++++..+++||+++|||+.+|+.++.++|++++++||+||+++||.+.++++++.+++
T Consensus 133 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~a~GGI~~~~i~~~~~~Ga~gv~~gs~i~~~~d~~~~~~~l~~~~~~ 210 (212)
T PRK00043 133 IFPTPTKKDAKAPQGLEGLREIRAAVGDIPIVAIGGITPENAPEVLEAGADGVAVVSAITGAEDPEAAARALLAAFRA 210 (212)
T ss_pred ccCCCCCCCCCCCCCHHHHHHHHHhcCCCCEEEECCcCHHHHHHHHHcCCCEEEEeHHhhcCCCHHHHHHHHHHHHhh
Confidence 4455544444433 4899999988875699999999999999999999999999999999999999999999987764
No 22
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=99.50 E-value=1.3e-13 Score=89.24 Aligned_cols=73 Identities=19% Similarity=0.133 Sum_probs=65.1
Q ss_pred CccCCCCCCCCC-CcchHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHH
Q psy11601 1 MTVEPGFGGQKF-MQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINCPDRIQAISTLK 74 (82)
Q Consensus 1 m~v~pG~~gq~~-~~~~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~ 74 (82)
|.+.|+..++.+ .+..+++++++++. .++|+.++|||+.+|+.++.++|++++++||++|..+|+.+.+++++
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~pv~a~GGi~~~~i~~~~~~Ga~~i~~g~~i~~~~~~~~~~~~l~ 195 (196)
T cd00564 122 GPVFPTPTKPGAGPPLGLELLREIAEL-VEIPVVAIGGITPENAAEVLAAGADGVAVISAITGADDPAAAARELL 195 (196)
T ss_pred CCccCCCCCCCCCCCCCHHHHHHHHHh-CCCCEEEECCCCHHHHHHHHHcCCCEEEEehHhhcCCCHHHHHHHHh
Confidence 346788888777 88899999999887 47999999999999999999999999999999999899999888875
No 23
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=99.47 E-value=1.7e-13 Score=99.74 Aligned_cols=78 Identities=23% Similarity=0.390 Sum_probs=70.9
Q ss_pred ccCCCCCCCCCCcchHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHHHHHh
Q psy11601 2 TVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINCPDRIQAISTLKSSVQKY 80 (82)
Q Consensus 2 ~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~~~~~ 80 (82)
.+.|||.+|.+.+..++.++++++.. ++||+++|||+.+|+.+++++|||++++||+||+++||++.++++++.++++
T Consensus 136 ~~~pg~~~~~~~~~~~~~l~~l~~~~-~iPI~a~GGI~~~n~~~~l~aGAdgv~vGsaI~~~~d~~~~~~~l~~~i~~~ 213 (430)
T PRK07028 136 NVHVGIDQQMLGKDPLELLKEVSEEV-SIPIAVAGGLDAETAAKAVAAGADIVIVGGNIIKSADVTEAARKIREAIDSG 213 (430)
T ss_pred EEEeccchhhcCCChHHHHHHHHhhC-CCcEEEECCCCHHHHHHHHHcCCCEEEEChHHcCCCCHHHHHHHHHHHHhcc
Confidence 46799999999888889999998865 5999999999999999999999999999999999999999999999987754
No 24
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=99.39 E-value=1.6e-12 Score=89.63 Aligned_cols=76 Identities=21% Similarity=0.340 Sum_probs=63.3
Q ss_pred CccCCCCCCCC--CCcchHHHHHHHHHhCCCCcEEEEcCCC-cccHHHHHHcCCCEEEEeccccC---C--CCHHHHHHH
Q psy11601 1 MTVEPGFGGQK--FMQDMMPKVKWLRENYPTLNIEVDGGVG-PNTIDECAKAGANWIVSGTAVIN---C--PDRIQAIST 72 (82)
Q Consensus 1 m~v~pG~~gq~--~~~~~~~ki~~~~~~~~~~~i~~dGGI~-~~ni~~~~~~Gad~vv~gs~i~~---~--~d~~~~~~~ 72 (82)
|+++ |+.||+ |.++..++++++++.. +.||+++|||+ ++++..+.+.|||++|+||++++ . .++.+.++.
T Consensus 170 vs~~-G~TG~~~~~~~~~~~~i~~lr~~~-~~pi~vgfGI~~~e~~~~~~~~GADgvVvGSaiv~~~~~~~~~~~~~~~~ 247 (256)
T TIGR00262 170 VSRA-GVTGARNRAASALNELVKRLKAYS-AKPVLVGFGISKPEQVKQAIDAGADGVIVGSAIVKIIEENLNTPEKMLQA 247 (256)
T ss_pred EECC-CCCCCcccCChhHHHHHHHHHhhc-CCCEEEeCCCCCHHHHHHHHHcCCCEEEECHHHHHHHHhccCCHHHHHHH
Confidence 5776 999996 9999999999999985 57999999997 99999999999999999999987 1 255555555
Q ss_pred HHHHHH
Q psy11601 73 LKSSVQ 78 (82)
Q Consensus 73 l~~~~~ 78 (82)
+.+.++
T Consensus 248 i~~~~~ 253 (256)
T TIGR00262 248 LEEFVQ 253 (256)
T ss_pred HHHHHH
Confidence 555443
No 25
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=99.37 E-value=2.5e-12 Score=86.78 Aligned_cols=68 Identities=18% Similarity=0.245 Sum_probs=62.9
Q ss_pred CcchHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHHHHHhh
Q psy11601 13 MQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINCPDRIQAISTLKSSVQKYL 81 (82)
Q Consensus 13 ~~~~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~~~~~~ 81 (82)
.+..++.++++++.. ++|++++|||+++|+.++.++||++|++.|+||.++|++.+++++++.++++.
T Consensus 143 ~~~G~~~l~~~~~~~-~iP~vAIGGi~~~nv~~v~~~Ga~gVAvvsai~~a~d~~~a~~~~~~~~~~~~ 210 (211)
T COG0352 143 PPLGLEGLREIRELV-NIPVVAIGGINLENVPEVLEAGADGVAVVSAITSAADPAAAAKALRNALEDEK 210 (211)
T ss_pred CccCHHHHHHHHHhC-CCCEEEEcCCCHHHHHHHHHhCCCeEEehhHhhcCCCHHHHHHHHHHHHHhhc
Confidence 577888999888886 49999999999999999999999999999999999999999999999988754
No 26
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=99.35 E-value=2.4e-12 Score=87.97 Aligned_cols=60 Identities=25% Similarity=0.382 Sum_probs=55.6
Q ss_pred CccCCCCCCCC-CCcchHHHHHHHHHhCCCCcEEEEcCCC-cccHHHHHHcCCCEEEEeccccC
Q psy11601 1 MTVEPGFGGQK-FMQDMMPKVKWLRENYPTLNIEVDGGVG-PNTIDECAKAGANWIVSGTAVIN 62 (82)
Q Consensus 1 m~v~pG~~gq~-~~~~~~~ki~~~~~~~~~~~i~~dGGI~-~~ni~~~~~~Gad~vv~gs~i~~ 62 (82)
|+++|++++|. |.+...++++++++.. ++||+++|||+ .++++.+.++ ||++|+||++|+
T Consensus 159 ~s~~g~tG~~~~~~~~~~~~i~~lr~~~-~~pI~vggGI~~~e~~~~~~~~-ADgvVvGSaiv~ 220 (242)
T cd04724 159 VSRTGVTGARTELPDDLKELIKRIRKYT-DLPIAVGFGISTPEQAAEVAKY-ADGVIVGSALVK 220 (242)
T ss_pred EeCCCCCCCccCCChhHHHHHHHHHhcC-CCcEEEEccCCCHHHHHHHHcc-CCEEEECHHHHH
Confidence 68999999998 8999999999999974 79999999999 5599999999 999999999986
No 27
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=99.31 E-value=8.6e-12 Score=84.49 Aligned_cols=67 Identities=18% Similarity=0.260 Sum_probs=60.7
Q ss_pred CCcchHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHHHHH
Q psy11601 12 FMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINCPDRIQAISTLKSSVQK 79 (82)
Q Consensus 12 ~~~~~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~~~~ 79 (82)
..|..++.++++++.. ++|++++|||+.+|+.++.++||+++++.|+||+++||.+++++|++.++.
T Consensus 148 ~~p~gl~~l~~~~~~~-~iPvvAIGGI~~~n~~~~~~~GA~giAvisai~~~~dp~~a~~~~~~~~~~ 214 (221)
T PRK06512 148 AHPRNLSLAEWWAEMI-EIPCIVQAGSDLASAVEVAETGAEFVALERAVFDAHDPPLAVAQANALLDE 214 (221)
T ss_pred CCCCChHHHHHHHHhC-CCCEEEEeCCCHHHHHHHHHhCCCEEEEhHHhhCCCCHHHHHHHHHHHHhh
Confidence 3456788888888775 699999999999999999999999999999999999999999999998875
No 28
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=99.29 E-value=1.2e-11 Score=83.52 Aligned_cols=76 Identities=25% Similarity=0.412 Sum_probs=62.7
Q ss_pred cCCCCCCC----CCCcchHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHHHH
Q psy11601 3 VEPGFGGQ----KFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINCPDRIQAISTLKSSVQ 78 (82)
Q Consensus 3 v~pG~~gq----~~~~~~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~~~ 78 (82)
+|-|.+-| .|..+.+++++++.++ .+++.|.|||++++++.+...|++.|++|++|.++.||.++++++++.++
T Consensus 136 ~H~g~D~q~~G~~~~~~~l~~ik~~~~~--g~~vAVaGGI~~~~i~~~~~~~~~ivIvGraIt~a~dp~~~a~~~~~~i~ 213 (217)
T COG0269 136 LHRGRDAQAAGKSWGEDDLEKIKKLSDL--GAKVAVAGGITPEDIPLFKGIGADIVIVGRAITGAKDPAEAARKFKEEID 213 (217)
T ss_pred EEecccHhhcCCCccHHHHHHHHHhhcc--CceEEEecCCCHHHHHHHhcCCCCEEEECchhcCCCCHHHHHHHHHHHHh
Confidence 45555544 4444566666666664 38999999999999999999999999999999999999999999999987
Q ss_pred Hh
Q psy11601 79 KY 80 (82)
Q Consensus 79 ~~ 80 (82)
++
T Consensus 214 ~~ 215 (217)
T COG0269 214 KI 215 (217)
T ss_pred cc
Confidence 54
No 29
>PRK07695 transcriptional regulator TenI; Provisional
Probab=99.24 E-value=7.1e-11 Score=78.30 Aligned_cols=66 Identities=12% Similarity=0.218 Sum_probs=59.0
Q ss_pred CcchHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHHHHH
Q psy11601 13 MQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINCPDRIQAISTLKSSVQK 79 (82)
Q Consensus 13 ~~~~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~~~~ 79 (82)
.+..++.++++++.. ++|+.+.|||+++|+.++.++|+++++++|+|+.++||.+.++++++.+++
T Consensus 134 ~~~g~~~l~~~~~~~-~ipvia~GGI~~~~~~~~~~~Ga~gvav~s~i~~~~~p~~~~~~~~~~~~~ 199 (201)
T PRK07695 134 PARGLEELSDIARAL-SIPVIAIGGITPENTRDVLAAGVSGIAVMSGIFSSANPYSKAKRYAESIKK 199 (201)
T ss_pred CCCCHHHHHHHHHhC-CCCEEEEcCCCHHHHHHHHHcCCCEEEEEHHHhcCCCHHHHHHHHHHHHhh
Confidence 344677888887765 599999999999999999999999999999999999999999999998875
No 30
>PRK12290 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=99.24 E-value=3.6e-11 Score=88.16 Aligned_cols=70 Identities=9% Similarity=0.090 Sum_probs=61.8
Q ss_pred CCCcchHHHHHHHHHhCC--------CCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHHHHHh
Q psy11601 11 KFMQDMMPKVKWLRENYP--------TLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINCPDRIQAISTLKSSVQKY 80 (82)
Q Consensus 11 ~~~~~~~~ki~~~~~~~~--------~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~~~~~ 80 (82)
...|..+++++++++... ++|++++|||+++|+.++.++||+++++.|+|+.++||++++++|++.+.+.
T Consensus 338 ~~~p~Gl~~L~~~~~l~~~~~~~~~~~iPVVAIGGI~~~Ni~~vl~aGa~GVAVVSAI~~A~DP~aa~~~l~~~~~~~ 415 (437)
T PRK12290 338 PSKPQGLVRLALYQKLIDTIPYQGQTGFPTVAIGGIDQSNAEQVWQCGVSSLAVVRAITLAEDPQLVIEFFDQVMAEN 415 (437)
T ss_pred CCCCCCHHHHHHHHHHhhhccccccCCCCEEEECCcCHHHHHHHHHcCCCEEEEehHhhcCCCHHHHHHHHHHHHhhc
Confidence 356778888888776542 6999999999999999999999999999999999999999999999988653
No 31
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=99.20 E-value=6.5e-11 Score=79.48 Aligned_cols=64 Identities=20% Similarity=0.222 Sum_probs=55.4
Q ss_pred chHHHHHHHHHhCC-CCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCC----CCHHHHHHHHHHHHH
Q psy11601 15 DMMPKVKWLRENYP-TLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINC----PDRIQAISTLKSSVQ 78 (82)
Q Consensus 15 ~~~~ki~~~~~~~~-~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~----~d~~~~~~~l~~~~~ 78 (82)
-..+.++++++..+ ++|++++|||+++|+.+|.++|++.++++|+||++ +|+++.++++++.++
T Consensus 136 ~G~~~l~~l~~~~~~~ipvvaiGGI~~~n~~~~~~aGa~~vav~s~l~~~~~~~~~i~~~a~~~~~~~~ 204 (206)
T PRK09140 136 LGPAGIKALRAVLPPDVPVFAVGGVTPENLAPYLAAGAAGFGLGSALYRPGQSAEEVAERARAFVAAYR 204 (206)
T ss_pred CCHHHHHHHHhhcCCCCeEEEECCCCHHHHHHHHHCCCeEEEEehHhcccccChHHHHHHHHHHHHHHh
Confidence 35677888888775 69999999999999999999999999999999986 678888888877665
No 32
>PRK03512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=99.18 E-value=1.3e-10 Score=78.14 Aligned_cols=66 Identities=14% Similarity=0.115 Sum_probs=57.8
Q ss_pred cchHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHHHHH
Q psy11601 14 QDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINCPDRIQAISTLKSSVQK 79 (82)
Q Consensus 14 ~~~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~~~~ 79 (82)
+..++.++++.+...++|+++.|||+.+|+.++.++|++++++.|+||+++||.++++++++.+..
T Consensus 143 ~~G~~~l~~~~~~~~~~PV~AiGGI~~~ni~~l~~~Ga~GiAvisai~~~~d~~~~~~~l~~~~~~ 208 (211)
T PRK03512 143 PQGLAQLARHVERLADYPTVAIGGISLERAPAVLATGVGSIAVVSAITQAADWRAATAQLLELAEV 208 (211)
T ss_pred CCCHHHHHHHHHhcCCCCEEEECCCCHHHHHHHHHcCCCEEEEhhHhhCCCCHHHHHHHHHHHHhh
Confidence 346677777766544689999999999999999999999999999999999999999999987754
No 33
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=99.16 E-value=1.4e-10 Score=76.14 Aligned_cols=59 Identities=19% Similarity=0.204 Sum_probs=52.5
Q ss_pred chHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCCCCHHHHHHHH
Q psy11601 15 DMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINCPDRIQAISTL 73 (82)
Q Consensus 15 ~~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l 73 (82)
..++.++++++..+++|+++.|||+++|+.++.++|+++++++|+||+++||.+.+++|
T Consensus 138 ~g~~~l~~~~~~~~~~pv~a~GGI~~~~~~~~~~~G~~gva~~~~i~~~~dp~~~~~~l 196 (196)
T TIGR00693 138 AGVELLREIAATSIDIPIVAIGGITLENAAEVLAAGADGVAVVSAIMQAADPKAAAKQL 196 (196)
T ss_pred CCHHHHHHHHHhcCCCCEEEECCcCHHHHHHHHHcCCCEEEEhHHhhCCCCHHHHHHhC
Confidence 46788888887655689999999999999999999999999999999999999887753
No 34
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=99.15 E-value=1.6e-10 Score=80.11 Aligned_cols=71 Identities=17% Similarity=0.208 Sum_probs=53.6
Q ss_pred CCCCCCCC--CCcchHHHHHHHHHhCCCCcEEEEcCCC-cccHHHHHHcCCCEEEEeccc---cCCCCHHHHHHHHHH
Q psy11601 4 EPGFGGQK--FMQDMMPKVKWLRENYPTLNIEVDGGVG-PNTIDECAKAGANWIVSGTAV---INCPDRIQAISTLKS 75 (82)
Q Consensus 4 ~pG~~gq~--~~~~~~~ki~~~~~~~~~~~i~~dGGI~-~~ni~~~~~~Gad~vv~gs~i---~~~~d~~~~~~~l~~ 75 (82)
+||+.|++ +.++..+.++++|+.. +.|+++.+||+ +++++.+.+.|||++|+||++ +...+.++.++++++
T Consensus 176 ~~GvTG~~~~~~~~~~~~i~~ir~~t-~~Pi~vGFGI~~~e~~~~~~~~GADGvVVGSalv~~i~~~~~~~~~~~~~~ 252 (263)
T CHL00200 176 TTGVTGLKTELDKKLKKLIETIKKMT-NKPIILGFGISTSEQIKQIKGWNINGIVIGSACVQILLGSSPEKGLDQLSE 252 (263)
T ss_pred CCCCCCCCccccHHHHHHHHHHHHhc-CCCEEEECCcCCHHHHHHHHhcCCCEEEECHHHHHHHHhcChhhHHHHHHH
Confidence 79999995 3444555566777764 78999999999 999999999999999999998 544344433333333
No 35
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=99.12 E-value=2.2e-10 Score=80.13 Aligned_cols=65 Identities=14% Similarity=0.195 Sum_probs=58.4
Q ss_pred chHHHHHHHHHhCCCCcEE--EEcCC-CcccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHHHHHh
Q psy11601 15 DMMPKVKWLRENYPTLNIE--VDGGV-GPNTIDECAKAGANWIVSGTAVINCPDRIQAISTLKSSVQKY 80 (82)
Q Consensus 15 ~~~~ki~~~~~~~~~~~i~--~dGGI-~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~~~~~ 80 (82)
..++.|+++++.. ++|++ +.||| +++|+..+.++|||++++||+||+++||.+.+++|.+.+..|
T Consensus 184 ~~~elLkei~~~~-~iPVV~fAiGGI~TPedAa~~melGAdGVaVGSaI~ks~dP~~~akafv~ai~~~ 251 (287)
T TIGR00343 184 VPVELLLEVLKLG-KLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSSNPEKLAKAIVEATTHY 251 (287)
T ss_pred CCHHHHHHHHHhC-CCCEEEeccCCCCCHHHHHHHHHcCCCEEEEhHHhhcCCCHHHHHHHHHHHHHHc
Confidence 4677788888765 68998 99999 999999999999999999999999999999999999887654
No 36
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=99.12 E-value=3.1e-10 Score=79.55 Aligned_cols=67 Identities=19% Similarity=0.276 Sum_probs=59.9
Q ss_pred CcchHHHHHHHHHhCCCCcEE--EEcCC-CcccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHHHHHh
Q psy11601 13 MQDMMPKVKWLRENYPTLNIE--VDGGV-GPNTIDECAKAGANWIVSGTAVINCPDRIQAISTLKSSVQKY 80 (82)
Q Consensus 13 ~~~~~~ki~~~~~~~~~~~i~--~dGGI-~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~~~~~ 80 (82)
....++.|+++++.. ++|++ +.||| +++++..+.++|||++++||+||+++||.+.+++|.+.+..|
T Consensus 188 ~~~~~elL~ei~~~~-~iPVV~~AeGGI~TPedaa~vme~GAdgVaVGSaI~ks~dP~~~akafv~ai~~~ 257 (293)
T PRK04180 188 LQAPYELVKEVAELG-RLPVVNFAAGGIATPADAALMMQLGADGVFVGSGIFKSGDPEKRARAIVEATTHY 257 (293)
T ss_pred cCCCHHHHHHHHHhC-CCCEEEEEeCCCCCHHHHHHHHHhCCCEEEEcHHhhcCCCHHHHHHHHHHHHHHc
Confidence 345678888888875 58998 99999 999999999999999999999999999999999999988765
No 37
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=99.10 E-value=3.5e-10 Score=81.11 Aligned_cols=66 Identities=20% Similarity=0.247 Sum_probs=59.6
Q ss_pred cchHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHHHHHh
Q psy11601 14 QDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINCPDRIQAISTLKSSVQKY 80 (82)
Q Consensus 14 ~~~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~~~~~ 80 (82)
+-.++.++++++.. ++|++++|||+++|+.++.++|+++|+++|+|++++||.++++++.+.+.+.
T Consensus 280 ~~Gle~l~~~~~~~-~iPv~AiGGI~~~ni~~l~~~Ga~gVAvisaI~~a~dp~~~~~~l~~~l~~~ 345 (347)
T PRK02615 280 PAGLEYLKYAAKEA-PIPWFAIGGIDKSNIPEVLQAGAKRVAVVRAIMGAEDPKQATQELLKQLSRE 345 (347)
T ss_pred CCCHHHHHHHHHhC-CCCEEEECCCCHHHHHHHHHcCCcEEEEeHHHhCCCCHHHHHHHHHHHHhcc
Confidence 55678888888765 5999999999999999999999999999999999999999999999888653
No 38
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=99.07 E-value=6.7e-10 Score=77.63 Aligned_cols=66 Identities=20% Similarity=0.250 Sum_probs=58.9
Q ss_pred cchHHHHHHHHHhCCCCcEE--EEcCC-CcccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHHHHHh
Q psy11601 14 QDMMPKVKWLRENYPTLNIE--VDGGV-GPNTIDECAKAGANWIVSGTAVINCPDRIQAISTLKSSVQKY 80 (82)
Q Consensus 14 ~~~~~ki~~~~~~~~~~~i~--~dGGI-~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~~~~~ 80 (82)
+..++.|+++++.. ++|++ +.||| +++|+..+.++||+++++||+||+++||.+.+++|++.++++
T Consensus 180 ~~d~elLk~l~~~~-~iPVV~iAeGGI~Tpena~~v~e~GAdgVaVGSAI~~a~dP~~~tk~f~~ai~~~ 248 (283)
T cd04727 180 QAPYELVKETAKLG-RLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSENPEKRARAIVEAVTHY 248 (283)
T ss_pred CCCHHHHHHHHHhc-CCCeEEEEeCCCCCHHHHHHHHHcCCCEEEEcHHhhcCCCHHHHHHHHHHHHHhc
Confidence 34667788888875 58997 99999 999999999999999999999999999999999999988754
No 39
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=99.06 E-value=5e-10 Score=75.62 Aligned_cols=64 Identities=20% Similarity=0.223 Sum_probs=54.2
Q ss_pred chHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCC------CCHHHHHHHHHHHHH
Q psy11601 15 DMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINC------PDRIQAISTLKSSVQ 78 (82)
Q Consensus 15 ~~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~------~d~~~~~~~l~~~~~ 78 (82)
...+.++.++...|++|++++|||+.+|+.+|+++|++.+++||.++.. +++.+.++++.+.++
T Consensus 141 ~G~~~ik~l~~~~p~ip~~atGGI~~~N~~~~l~aGa~~vavgs~l~~~~~~~~~~~i~~~a~~~~~~~~ 210 (213)
T PRK06552 141 LGPSFIKAIKGPLPQVNVMVTGGVNLDNVKDWFAAGADAVGIGGELNKLASQGDFDLITEKAKKYMSSLR 210 (213)
T ss_pred CCHHHHHHHhhhCCCCEEEEECCCCHHHHHHHHHCCCcEEEEchHHhCccccCCHHHHHHHHHHHHHHHH
Confidence 3467788888888889999999999999999999999999999999975 456677777766554
No 40
>PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase
Probab=99.01 E-value=1.7e-09 Score=80.19 Aligned_cols=69 Identities=17% Similarity=0.204 Sum_probs=61.5
Q ss_pred CcchHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCC---EEEEeccccCCCCHHHHHHHHHHHHHHhhC
Q psy11601 13 MQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGAN---WIVSGTAVINCPDRIQAISTLKSSVQKYLS 82 (82)
Q Consensus 13 ~~~~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad---~vv~gs~i~~~~d~~~~~~~l~~~~~~~~~ 82 (82)
.+-.++.++++.+.. ++|+++.|||+++|+.++.++|++ +++++|+|++++||.+.++++++.+.+.++
T Consensus 429 ~~~g~~~~~~~~~~~-~~Pv~aiGGI~~~~~~~~~~~G~~~~~gvav~~~i~~~~d~~~~~~~~~~~~~~~~~ 500 (502)
T PLN02898 429 KTIGLDGLREVCEAS-KLPVVAIGGISASNAASVMESGAPNLKGVAVVSALFDQEDVLKATRKLHAILTEALS 500 (502)
T ss_pred CCCCHHHHHHHHHcC-CCCEEEECCCCHHHHHHHHHcCCCcCceEEEEeHHhcCCCHHHHHHHHHHHHHHHhc
Confidence 345678888887764 699999999999999999999999 999999999999999999999999887653
No 41
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=98.97 E-value=2e-09 Score=73.96 Aligned_cols=64 Identities=16% Similarity=0.216 Sum_probs=56.2
Q ss_pred hHHHHHHHHHhCCCCcEEEEcCCC-------cccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHHHHHh
Q psy11601 16 MMPKVKWLRENYPTLNIEVDGGVG-------PNTIDECAKAGANWIVSGTAVINCPDRIQAISTLKSSVQKY 80 (82)
Q Consensus 16 ~~~ki~~~~~~~~~~~i~~dGGI~-------~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~~~~~ 80 (82)
.++.++++.+.. ++|++++|||+ .+|++++.++||+++++|+.||+++||.+.+++|++.+.+.
T Consensus 180 ~~~~l~~~~~~~-~iPVva~GGi~~~~~~~~~~~i~~~~~aGa~Gia~g~~i~~~~dp~~~~~~l~~~i~~~ 250 (258)
T TIGR01949 180 DIDSFRDVVKGC-PAPVVVAGGPKTNSDREFLQMIKDAMEAGAAGVAVGRNIFQHDDPVGITKAVCKIVHEN 250 (258)
T ss_pred CHHHHHHHHHhC-CCcEEEecCCCCCCHHHHHHHHHHHHHcCCcEEehhhHhhcCCCHHHHHHHHHHHHhCC
Confidence 466777777654 58999999999 78899999999999999999999999999999999988654
No 42
>PRK09517 multifunctional thiamine-phosphate pyrophosphorylase/synthase/phosphomethylpyrimidine kinase; Provisional
Probab=98.95 E-value=3.7e-09 Score=81.87 Aligned_cols=66 Identities=17% Similarity=0.160 Sum_probs=59.4
Q ss_pred chHHHHHHHHHhCC--CCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHHHHHh
Q psy11601 15 DMMPKVKWLRENYP--TLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINCPDRIQAISTLKSSVQKY 80 (82)
Q Consensus 15 ~~~~ki~~~~~~~~--~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~~~~~ 80 (82)
-.++.++++++... ++|++++|||+++|++++.++||+++++.|+|++++||.++++++++.++..
T Consensus 150 lG~~~l~~~~~~~~~~~iPv~AiGGI~~~~~~~~~~~Ga~giAvisai~~a~d~~~a~~~l~~~~~~~ 217 (755)
T PRK09517 150 LGVDGIAEIAAVAQDHGIASVAIGGVGLRNAAELAATGIDGLCVVSAIMAAANPAAAARELRTAFQPT 217 (755)
T ss_pred CCHHHHHHHHHhcCcCCCCEEEECCCCHHHHHHHHHcCCCEEEEehHhhCCCCHHHHHHHHHHHHHHh
Confidence 46788888887763 3999999999999999999999999999999999999999999999988754
No 43
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=98.93 E-value=2.2e-09 Score=71.05 Aligned_cols=48 Identities=17% Similarity=0.097 Sum_probs=44.2
Q ss_pred hHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCC
Q psy11601 16 MMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINC 63 (82)
Q Consensus 16 ~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~ 63 (82)
.++.++++++..|++|++++|||+++|+.++.++|+++++++|+||..
T Consensus 139 G~~~l~~~~~~~~~ipvvaiGGI~~~n~~~~l~aGa~~vav~s~i~~~ 186 (187)
T PRK07455 139 GADYIKSLQGPLGHIPLIPTGGVTLENAQAFIQAGAIAVGLSGQLFPK 186 (187)
T ss_pred CHHHHHHHHhhCCCCcEEEeCCCCHHHHHHHHHCCCeEEEEehhcccC
Confidence 477888888887789999999999999999999999999999999964
No 44
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=98.84 E-value=1.5e-08 Score=67.78 Aligned_cols=67 Identities=19% Similarity=0.317 Sum_probs=54.8
Q ss_pred CCCCCCCCcchHHHHHHHHHhC-CCCcEEEEcCCCc-ccHHHHHHcCCCEEEEeccccCCCCHHHHHHHH
Q psy11601 6 GFGGQKFMQDMMPKVKWLRENY-PTLNIEVDGGVGP-NTIDECAKAGANWIVSGTAVINCPDRIQAISTL 73 (82)
Q Consensus 6 G~~gq~~~~~~~~ki~~~~~~~-~~~~i~~dGGI~~-~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l 73 (82)
+..++.+.+. ++.++++++.. .+.|+.+.|||+. +++.++.++|||++++||+|++.+||.+.+++|
T Consensus 149 ~~~~~~~~~~-~~~~~~l~~~~~~~~pvia~gGI~s~edi~~~~~~Ga~gvivGsai~~~~~p~~~~~~~ 217 (217)
T cd00331 149 NRDLKTFEVD-LNTTERLAPLIPKDVILVSESGISTPEDVKRLAEAGADAVLIGESLMRAPDPGAALREL 217 (217)
T ss_pred CCCccccCcC-HHHHHHHHHhCCCCCEEEEEcCCCCHHHHHHHHHcCCCEEEECHHHcCCCCHHHHHHhC
Confidence 3445555444 48888888765 3689999999965 999999999999999999999999999887753
No 45
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=98.83 E-value=1.7e-08 Score=68.10 Aligned_cols=61 Identities=18% Similarity=0.320 Sum_probs=53.2
Q ss_pred hHHHHHHHHHhCCCCcEEEEcCCCc-------ccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHHH
Q psy11601 16 MMPKVKWLRENYPTLNIEVDGGVGP-------NTIDECAKAGANWIVSGTAVINCPDRIQAISTLKSSV 77 (82)
Q Consensus 16 ~~~ki~~~~~~~~~~~i~~dGGI~~-------~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~~ 77 (82)
.++.++++.+.. ++|+++.||++. +|++++.++||+++++|+.||+++||.+.++++++.+
T Consensus 167 ~~~~~~~i~~~~-~~pvv~~GG~~~~~~~~~l~~~~~~~~~Ga~gv~vg~~i~~~~dp~~~~~~~~~~~ 234 (235)
T cd00958 167 DAESFKEVVEGC-PVPVVIAGGPKKDSEEEFLKMVYDAMEAGAAGVAVGRNIFQRPDPVAMLRAISAVV 234 (235)
T ss_pred CHHHHHHHHhcC-CCCEEEeCCCCCCCHHHHHHHHHHHHHcCCcEEEechhhhcCCCHHHHHHHHHHHh
Confidence 567778877765 588999999966 6799999999999999999999999999999998764
No 46
>PRK13305 sgbH 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional
Probab=98.82 E-value=1.3e-08 Score=69.03 Aligned_cols=69 Identities=14% Similarity=0.323 Sum_probs=59.2
Q ss_pred CCCCcchHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHHHHHh
Q psy11601 10 QKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINCPDRIQAISTLKSSVQKY 80 (82)
Q Consensus 10 q~~~~~~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~~~~~ 80 (82)
.-+.+..++.+++.... ++++.|.|||+++......+.++|.+|+|++|++++||.++++++++.++++
T Consensus 146 ~v~s~~e~~~ir~~~~~--~~~i~VtpGIr~~~~~~~dq~rvd~iVVGR~It~A~dP~~aa~~i~~~i~~~ 214 (218)
T PRK13305 146 QQWGEADLARMKALSDI--GLELSITGGITPADLPLFKDIRVKAFIAGRALAGAANPAQVAADFHAQIDAI 214 (218)
T ss_pred CCCCHHHHHHHHHHhCC--CCcEEEeCCcCccccccccccCCCEEEECCcccCCCCHHHHHHHHHHHHHHh
Confidence 34556667777766543 5789999999999999999999999999999999999999999999998764
No 47
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=98.81 E-value=9.5e-09 Score=67.76 Aligned_cols=50 Identities=20% Similarity=0.232 Sum_probs=43.8
Q ss_pred CcchHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccC
Q psy11601 13 MQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVIN 62 (82)
Q Consensus 13 ~~~~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~ 62 (82)
.+...+-++++++..+++|+++.|||+++|+.++.++|++.++++|.+|.
T Consensus 127 ~~~g~~~~~~l~~~~~~~p~~a~GGI~~~n~~~~~~~G~~~v~v~s~i~~ 176 (190)
T cd00452 127 EAVGPAYIKALKGPFPQVRFMPTGGVSLDNAAEWLAAGVVAVGGGSLLPK 176 (190)
T ss_pred cccCHHHHHHHHhhCCCCeEEEeCCCCHHHHHHHHHCCCEEEEEchhcch
Confidence 34456677888877777999999999999999999999999999999993
No 48
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=98.78 E-value=3.1e-08 Score=68.49 Aligned_cols=63 Identities=17% Similarity=0.261 Sum_probs=53.9
Q ss_pred HHHHHHHHHhCCCCcEEEEcCCCccc-------HHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHHHHHh
Q psy11601 17 MPKVKWLRENYPTLNIEVDGGVGPNT-------IDECAKAGANWIVSGTAVINCPDRIQAISTLKSSVQKY 80 (82)
Q Consensus 17 ~~ki~~~~~~~~~~~i~~dGGI~~~n-------i~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~~~~~ 80 (82)
.+.++++.+.. ++||.+.|||+.+| +.++.++||+++++|+.||+.+||.+.+++|++.+.+.
T Consensus 185 ~~~l~~~~~~~-~ipV~a~GGi~~~~~~~~l~~v~~~~~aGA~Gis~gr~i~~~~~p~~~~~~l~~~v~~~ 254 (267)
T PRK07226 185 PESFREVVEGC-PVPVVIAGGPKTDTDREFLEMVRDAMEAGAAGVAVGRNVFQHEDPEAITRAISAVVHEG 254 (267)
T ss_pred HHHHHHHHHhC-CCCEEEEeCCCCCCHHHHHHHHHHHHHcCCcEEehhhhhhcCCCHHHHHHHHHHHHhCC
Confidence 45566666543 58999999999887 77888999999999999999999999999999987653
No 49
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=98.73 E-value=2.3e-08 Score=65.49 Aligned_cols=54 Identities=30% Similarity=0.454 Sum_probs=43.4
Q ss_pred CCCcchHHHHHH-HHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCCC
Q psy11601 11 KFMQDMMPKVKW-LRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINCP 64 (82)
Q Consensus 11 ~~~~~~~~ki~~-~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~~ 64 (82)
.|.|+.++++.+ ++...+++.+++.||||++|+.+|.+.|+|.+++|+....++
T Consensus 108 ~~~~~~~~~~v~~l~~~~~~v~ie~SGGI~~~ni~~ya~~gvD~isvg~~~~~a~ 162 (169)
T PF01729_consen 108 NMSPEDLKEAVEELRELNPRVKIEASGGITLENIAEYAKTGVDVISVGSLTHSAP 162 (169)
T ss_dssp S-CHHHHHHHHHHHHHHTTTSEEEEESSSSTTTHHHHHHTT-SEEEECHHHHSBE
T ss_pred CcCHHHHHHHHHHHhhcCCcEEEEEECCCCHHHHHHHHhcCCCEEEcChhhcCCc
Confidence 456777777554 556677899999999999999999999999999999877643
No 50
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=98.73 E-value=2.2e-08 Score=70.43 Aligned_cols=54 Identities=26% Similarity=0.507 Sum_probs=44.1
Q ss_pred CCCcchHHHHHH-HHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCCC
Q psy11601 11 KFMQDMMPKVKW-LRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINCP 64 (82)
Q Consensus 11 ~~~~~~~~ki~~-~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~~ 64 (82)
+|.++.++++.+ +++..+++++++.||||++|+.+|+++|+|++++|+.++.++
T Consensus 224 n~~~e~l~~av~~~~~~~~~i~leAsGGIt~~ni~~ya~tGvD~Isvgsl~~sa~ 278 (288)
T PRK07428 224 NMPVDLMQQAVQLIRQQNPRVKIEASGNITLETIRAVAETGVDYISSSAPITRSP 278 (288)
T ss_pred CCCHHHHHHHHHHHHhcCCCeEEEEECCCCHHHHHHHHHcCCCEEEEchhhhCCC
Confidence 466666666554 343357899999999999999999999999999999998643
No 51
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=98.71 E-value=2.2e-08 Score=69.55 Aligned_cols=51 Identities=20% Similarity=0.347 Sum_probs=39.8
Q ss_pred CCcchHHHHHH-HHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCC
Q psy11601 12 FMQDMMPKVKW-LRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINC 63 (82)
Q Consensus 12 ~~~~~~~ki~~-~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~ 63 (82)
|.|+.++++.+ +++. +++|++++||||++|+.+|+++|+|++++|+.++..
T Consensus 210 ~~~e~l~~~v~~i~~~-~~i~i~asGGIt~~ni~~~a~~Gad~Isvgal~~s~ 261 (269)
T cd01568 210 MSPEELKEAVKLLKGL-PRVLLEASGGITLENIRAYAETGVDVISTGALTHSA 261 (269)
T ss_pred CCHHHHHHHHHHhccC-CCeEEEEECCCCHHHHHHHHHcCCCEEEEcHHHcCC
Confidence 55555555444 3333 578999999999999999999999999997777664
No 52
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=98.65 E-value=1.6e-07 Score=64.93 Aligned_cols=65 Identities=23% Similarity=0.387 Sum_probs=53.3
Q ss_pred CCCCcchHHHHHHHHHhCCC-CcEEEEcCC-CcccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHH
Q psy11601 10 QKFMQDMMPKVKWLRENYPT-LNIEVDGGV-GPNTIDECAKAGANWIVSGTAVINCPDRIQAISTLKS 75 (82)
Q Consensus 10 q~~~~~~~~ki~~~~~~~~~-~~i~~dGGI-~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~ 75 (82)
+.|.++ ++...++.+..|+ .++.+.||| +++++..+.++|+|+|++||+|.+++||.+.+++|..
T Consensus 192 ~~~~~d-~~~~~~l~~~~p~~~~vIaegGI~t~ed~~~~~~~Gad~vlVGsaI~~~~dp~~~~~~l~~ 258 (260)
T PRK00278 192 KTFEVD-LETTERLAPLIPSDRLVVSESGIFTPEDLKRLAKAGADAVLVGESLMRADDPGAALRELLG 258 (260)
T ss_pred ccccCC-HHHHHHHHHhCCCCCEEEEEeCCCCHHHHHHHHHcCCCEEEECHHHcCCCCHHHHHHHHhc
Confidence 344443 7777887776654 477888888 7999999999999999999999999999999888753
No 53
>PRK00230 orotidine 5'-phosphate decarboxylase; Reviewed
Probab=98.62 E-value=2.4e-07 Score=63.01 Aligned_cols=58 Identities=22% Similarity=0.337 Sum_probs=48.0
Q ss_pred HHHHHhCCCCcEEEEcCCCcc-----------cHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHHHH
Q psy11601 21 KWLRENYPTLNIEVDGGVGPN-----------TIDECAKAGANWIVSGTAVINCPDRIQAISTLKSSVQ 78 (82)
Q Consensus 21 ~~~~~~~~~~~i~~dGGI~~~-----------ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~~~ 78 (82)
+.+|+..++-.+.+.+||+++ +..+..+.|+|++|+|++||+++||.++++++++.+.
T Consensus 160 ~~ir~~~~~~~~~v~pGI~~~g~~~~dq~~~~~~~~ai~~Gad~iVvGR~I~~a~dP~~~a~~i~~~i~ 228 (230)
T PRK00230 160 AAIREATGPDFLLVTPGIRPAGSDAGDQKRVMTPAQAIAAGSDYIVVGRPITQAADPAAAYEAILAEIA 228 (230)
T ss_pred HHHHhhcCCceEEEcCCcCCCCCCcchHHHHhCHHHHHHcCCCEEEECCcccCCCCHHHHHHHHHHHhh
Confidence 333443333346888999988 8999999999999999999999999999999998875
No 54
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=98.62 E-value=1.1e-07 Score=64.04 Aligned_cols=48 Identities=15% Similarity=0.192 Sum_probs=43.7
Q ss_pred HHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCCC
Q psy11601 17 MPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINCP 64 (82)
Q Consensus 17 ~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~~ 64 (82)
.+-|+.++...|++++++.|||+++|+.+|+++|+..+++||.||..+
T Consensus 136 ~~yikal~~plp~i~~~ptGGV~~~N~~~~l~aGa~~vg~Gs~L~~~~ 183 (204)
T TIGR01182 136 VKMLKALAGPFPQVRFCPTGGINLANVRDYLAAPNVACGGGSWLVPKD 183 (204)
T ss_pred HHHHHHHhccCCCCcEEecCCCCHHHHHHHHhCCCEEEEEChhhcCch
Confidence 456788888889999999999999999999999999999999999744
No 55
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=98.58 E-value=9.8e-08 Score=66.80 Aligned_cols=49 Identities=16% Similarity=0.286 Sum_probs=39.0
Q ss_pred hHHHHHHHHHhC-CCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCCC
Q psy11601 16 MMPKVKWLRENY-PTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINCP 64 (82)
Q Consensus 16 ~~~ki~~~~~~~-~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~~ 64 (82)
..+.++++.+.. +++|+++.|||+++|+++|+++|+|++++|+..+.++
T Consensus 219 ~~e~l~~~v~~~~~~i~leAsGGIt~~ni~~~a~tGvD~Isvg~lt~s~~ 268 (277)
T PRK05742 219 SLDDMREAVRLTAGRAKLEASGGINESTLRVIAETGVDYISIGAMTKDVK 268 (277)
T ss_pred CHHHHHHHHHHhCCCCcEEEECCCCHHHHHHHHHcCCCEEEEChhhcCCc
Confidence 334444444432 5799999999999999999999999999999887654
No 56
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=98.56 E-value=1.7e-07 Score=61.27 Aligned_cols=47 Identities=19% Similarity=0.246 Sum_probs=39.9
Q ss_pred CcchHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEeccc
Q psy11601 13 MQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAV 60 (82)
Q Consensus 13 ~~~~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i 60 (82)
.+-.++.++++++.. ++|+++.|||+++|+.++.++|++++++.|+|
T Consensus 134 ~~~g~~~l~~~~~~~-~~pv~AlGGI~~~~i~~l~~~Ga~gvAvi~aI 180 (180)
T PF02581_consen 134 PPLGLDGLREIARAS-PIPVYALGGITPENIPELREAGADGVAVISAI 180 (180)
T ss_dssp TTCHHHHHHHHHHHT-SSCEEEESS--TTTHHHHHHTT-SEEEESHHH
T ss_pred cccCHHHHHHHHHhC-CCCEEEEcCCCHHHHHHHHHcCCCEEEEEeeC
Confidence 567889999998886 59999999999999999999999999999876
No 57
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=98.56 E-value=1.4e-07 Score=65.67 Aligned_cols=49 Identities=16% Similarity=0.239 Sum_probs=40.3
Q ss_pred chHHHHHHHHHhCC-CCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCC
Q psy11601 15 DMMPKVKWLRENYP-TLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINC 63 (82)
Q Consensus 15 ~~~~ki~~~~~~~~-~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~ 63 (82)
-..+.++++.+..+ ++|++++||||++|+.+|+++|+|++++|+..+.+
T Consensus 211 ~~~e~l~~~~~~~~~~ipi~AiGGI~~~ni~~~a~~Gvd~Iav~sl~~~a 260 (268)
T cd01572 211 MSPEELREAVALLKGRVLLEASGGITLENIRAYAETGVDYISVGALTHSA 260 (268)
T ss_pred cCHHHHHHHHHHcCCCCcEEEECCCCHHHHHHHHHcCCCEEEEEeeecCC
Confidence 34566666665442 58999999999999999999999999999988853
No 58
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=98.54 E-value=1.4e-07 Score=66.35 Aligned_cols=53 Identities=19% Similarity=0.270 Sum_probs=43.2
Q ss_pred CCCcchHHHHHH-HHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCC
Q psy11601 11 KFMQDMMPKVKW-LRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINC 63 (82)
Q Consensus 11 ~~~~~~~~ki~~-~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~ 63 (82)
+|.|+.+++.-+ +++..+++.+++.||||++|+.+|+++|+|.+++|+....+
T Consensus 227 nm~~e~vk~av~~~~~~~~~v~ieaSGGI~~~ni~~yA~tGvD~Is~galt~sa 280 (289)
T PRK07896 227 NFPVWQTQEAVQRRDARAPTVLLESSGGLTLDTAAAYAETGVDYLAVGALTHSV 280 (289)
T ss_pred CCCHHHHHHHHHHHhccCCCEEEEEECCCCHHHHHHHHhcCCCEEEeChhhcCC
Confidence 466666666544 34446789999999999999999999999999999988754
No 59
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=98.53 E-value=1.7e-07 Score=65.33 Aligned_cols=51 Identities=24% Similarity=0.370 Sum_probs=38.8
Q ss_pred CCCcchHHHHHH-HHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEecccc
Q psy11601 11 KFMQDMMPKVKW-LRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVI 61 (82)
Q Consensus 11 ~~~~~~~~ki~~-~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~ 61 (82)
+|.|..++++.+ +++..+++|+++.|||+++|+.+|.++|+|+|++++..+
T Consensus 211 ~~~p~~l~~~~~~~~~~~~~i~i~AsGGI~~~ni~~~~~~Gvd~I~vsai~~ 262 (272)
T cd01573 211 KFSPEELAELVPKLRSLAPPVLLAAAGGINIENAAAYAAAGADILVTSAPYY 262 (272)
T ss_pred CCCHHHHHHHHHHHhccCCCceEEEECCCCHHHHHHHHHcCCcEEEEChhhc
Confidence 355666666555 444446799999999999999999999999995555433
No 60
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=98.51 E-value=4e-07 Score=61.04 Aligned_cols=62 Identities=15% Similarity=0.197 Sum_probs=49.8
Q ss_pred CcchHHHHHHHHHhCCCCcEEEEcCC-CcccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHHHH
Q psy11601 13 MQDMMPKVKWLRENYPTLNIEVDGGV-GPNTIDECAKAGANWIVSGTAVINCPDRIQAISTLKSSVQ 78 (82)
Q Consensus 13 ~~~~~~ki~~~~~~~~~~~i~~dGGI-~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~~~ 78 (82)
.+..++.++++++.. ++|+.+.||| +++++.++.+.|||++++||+|++.+++.+ ++.+.++
T Consensus 158 ~~~~~~~i~~i~~~~-~iPvia~GGI~t~~~~~~~l~~GadgV~iGsai~~~~~~~~---~~~~~~~ 220 (221)
T PRK01130 158 EEPDFALLKELLKAV-GCPVIAEGRINTPEQAKKALELGAHAVVVGGAITRPEEITK---WFVDALK 220 (221)
T ss_pred CCcCHHHHHHHHHhC-CCCEEEECCCCCHHHHHHHHHCCCCEEEEchHhcCCHHHHH---HHHHHhh
Confidence 444577888888876 6999999999 699999999999999999999997655544 4444443
No 61
>PRK08999 hypothetical protein; Provisional
Probab=98.49 E-value=3e-07 Score=64.27 Aligned_cols=47 Identities=21% Similarity=0.225 Sum_probs=41.9
Q ss_pred cchHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEecccc
Q psy11601 14 QDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVI 61 (82)
Q Consensus 14 ~~~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~ 61 (82)
+-.++.++++++.. ++|+++.|||+.+|+.++.++|++++++.|+||
T Consensus 266 ~~g~~~~~~~~~~~-~~Pv~AiGGI~~~~~~~~~~~g~~gva~i~~~~ 312 (312)
T PRK08999 266 PLGWEGFAALIAGV-PLPVYALGGLGPGDLEEAREHGAQGIAGIRGLW 312 (312)
T ss_pred CCCHHHHHHHHHhC-CCCEEEECCCCHHHHHHHHHhCCCEEEEEEEeC
Confidence 45678888887765 699999999999999999999999999999886
No 62
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=98.48 E-value=2.8e-07 Score=64.54 Aligned_cols=53 Identities=26% Similarity=0.399 Sum_probs=43.9
Q ss_pred CCCcchHHHHHH-HHHhC--CCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCC
Q psy11601 11 KFMQDMMPKVKW-LRENY--PTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINC 63 (82)
Q Consensus 11 ~~~~~~~~ki~~-~~~~~--~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~ 63 (82)
+|.|+.++++.+ +++.. +++.+++.|||+++|+.+|+++|+|.+++|+..+.+
T Consensus 210 n~~~e~l~~~v~~l~~~~~~~~~~leaSGGI~~~ni~~yA~tGvD~Is~galt~sa 265 (278)
T PRK08385 210 NMTPEEIREVIEALKREGLRERVKIEVSGGITPENIEEYAKLDVDVISLGALTHSV 265 (278)
T ss_pred CCCHHHHHHHHHHHHhcCcCCCEEEEEECCCCHHHHHHHHHcCCCEEEeChhhcCC
Confidence 466777777666 44433 578999999999999999999999999999988854
No 63
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=98.47 E-value=2.4e-07 Score=64.73 Aligned_cols=53 Identities=26% Similarity=0.452 Sum_probs=42.3
Q ss_pred CCCcchHHHHHHHHH-hCCCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCC
Q psy11601 11 KFMQDMMPKVKWLRE-NYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINC 63 (82)
Q Consensus 11 ~~~~~~~~ki~~~~~-~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~ 63 (82)
.|.++.++++.++.+ ..|++.+.+.|||+++|+.+|++.|+|.+++|+.++.+
T Consensus 210 n~~~e~l~~~v~~~~~~~~~~~ieAsGgIt~~ni~~ya~~GvD~IsvG~l~~sa 263 (273)
T PRK05848 210 NMSVEEIKEVVAYRNANYPHVLLEASGNITLENINAYAKSGVDAISSGSLIHQA 263 (273)
T ss_pred CCCHHHHHHHHHHhhccCCCeEEEEECCCCHHHHHHHHHcCCCEEEeChhhcCC
Confidence 356666666555432 24578899999999999999999999999999998854
No 64
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=98.47 E-value=2.4e-07 Score=64.83 Aligned_cols=48 Identities=13% Similarity=0.231 Sum_probs=38.6
Q ss_pred hHHHHHHHHHhC-CCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCC
Q psy11601 16 MMPKVKWLRENY-PTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINC 63 (82)
Q Consensus 16 ~~~ki~~~~~~~-~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~ 63 (82)
..+.++++++.. ++++++++|||+++|+++|.++|+|++++|+..+.+
T Consensus 218 ~~e~l~~~~~~~~~~i~i~AiGGIt~~ni~~~a~~Gvd~IAvg~l~~sa 266 (277)
T PRK08072 218 TPDEIREFVKLVPSAIVTEASGGITLENLPAYGGTGVDYISLGFLTHSV 266 (277)
T ss_pred CHHHHHHHHHhcCCCceEEEECCCCHHHHHHHHHcCCCEEEEChhhcCC
Confidence 345555555542 458899999999999999999999999999988753
No 65
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=98.45 E-value=1.8e-06 Score=59.58 Aligned_cols=62 Identities=21% Similarity=0.382 Sum_probs=53.3
Q ss_pred HHHHHHHHHhCCCCcEEEEcCCC-cccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHHHHH
Q psy11601 17 MPKVKWLRENYPTLNIEVDGGVG-PNTIDECAKAGANWIVSGTAVINCPDRIQAISTLKSSVQK 79 (82)
Q Consensus 17 ~~ki~~~~~~~~~~~i~~dGGI~-~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~~~~ 79 (82)
-+.|+.+++. .++|+.++|||+ ++.+....+.|+|.++++|+|.+++||....+.|+..++.
T Consensus 164 ~~~I~~I~e~-~~vpVI~egGI~tpeda~~AmelGAdgVlV~SAIt~a~dP~~ma~af~~Av~a 226 (248)
T cd04728 164 PYNLRIIIER-ADVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIAKAKDPVAMARAFKLAVEA 226 (248)
T ss_pred HHHHHHHHHh-CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEChHhcCCCCHHHHHHHHHHHHHH
Confidence 4445566665 468999999995 8899999999999999999999999999999999988764
No 66
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=98.43 E-value=4.1e-07 Score=63.71 Aligned_cols=56 Identities=18% Similarity=0.310 Sum_probs=44.1
Q ss_pred CCCcchHHHHHH-HHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCC-CCH
Q psy11601 11 KFMQDMMPKVKW-LRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINC-PDR 66 (82)
Q Consensus 11 ~~~~~~~~ki~~-~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~-~d~ 66 (82)
+|.|+.+.+..+ +++..+++.+++.|||+++|+.+|++.|+|.+++|+..+.. -|+
T Consensus 216 n~~~e~l~~~v~~l~~~~~~~~leasGGI~~~ni~~ya~~GvD~is~gal~~a~~~Di 273 (277)
T TIGR01334 216 KFTPQQLHHLHERLKFFDHIPTLAAAGGINPENIADYIEAGIDLFITSAPYYAAPCDI 273 (277)
T ss_pred CCCHHHHHHHHHHHhccCCCEEEEEECCCCHHHHHHHHhcCCCEEEeCcceecCccce
Confidence 466666666554 44445788999999999999999999999999999987653 354
No 67
>PRK00208 thiG thiazole synthase; Reviewed
Probab=98.42 E-value=2.3e-06 Score=59.12 Aligned_cols=61 Identities=21% Similarity=0.382 Sum_probs=52.7
Q ss_pred HHHHHHHHhCCCCcEEEEcCCC-cccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHHHHH
Q psy11601 18 PKVKWLRENYPTLNIEVDGGVG-PNTIDECAKAGANWIVSGTAVINCPDRIQAISTLKSSVQK 79 (82)
Q Consensus 18 ~ki~~~~~~~~~~~i~~dGGI~-~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~~~~ 79 (82)
+.++.+++. .++|+.++|||+ ++.+....+.|+|.++++|+|.+++||....++|.+.++.
T Consensus 165 ~~i~~i~e~-~~vpVIveaGI~tpeda~~AmelGAdgVlV~SAItka~dP~~ma~af~~Av~a 226 (250)
T PRK00208 165 YNLRIIIEQ-ADVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIAVAGDPVAMARAFKLAVEA 226 (250)
T ss_pred HHHHHHHHh-cCCeEEEeCCCCCHHHHHHHHHcCCCEEEEChHhhCCCCHHHHHHHHHHHHHH
Confidence 335666665 368999999995 8999999999999999999999999999999999988763
No 68
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=98.41 E-value=3.7e-07 Score=61.12 Aligned_cols=48 Identities=31% Similarity=0.433 Sum_probs=41.0
Q ss_pred HHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCCC
Q psy11601 17 MPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINCP 64 (82)
Q Consensus 17 ~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~~ 64 (82)
.+-++.++...|++++++.|||+++|+.+|+++|+..+++||.+|..+
T Consensus 136 ~~~ik~l~~p~p~~~~~ptGGV~~~N~~~~l~ag~~~vg~Gs~L~~~~ 183 (196)
T PF01081_consen 136 PSYIKALRGPFPDLPFMPTGGVNPDNLAEYLKAGAVAVGGGSWLFPKD 183 (196)
T ss_dssp HHHHHHHHTTTTT-EEEEBSS--TTTHHHHHTSTTBSEEEESGGGSHH
T ss_pred HHHHHHHhccCCCCeEEEcCCCCHHHHHHHHhCCCEEEEECchhcCHH
Confidence 566888888888999999999999999999999999999999999754
No 69
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=98.40 E-value=8.9e-07 Score=59.86 Aligned_cols=48 Identities=15% Similarity=0.272 Sum_probs=40.8
Q ss_pred HHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCCC
Q psy11601 17 MPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINCP 64 (82)
Q Consensus 17 ~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~~ 64 (82)
.+.++.++...|++++++.|||+++|+.+|.++|+-.++.||.+|..+
T Consensus 143 ~~~lk~l~~p~p~~~~~ptGGV~~~ni~~~l~ag~v~~vggs~L~~~~ 190 (212)
T PRK05718 143 VKMLKALAGPFPDVRFCPTGGISPANYRDYLALPNVLCIGGSWMVPKD 190 (212)
T ss_pred HHHHHHHhccCCCCeEEEeCCCCHHHHHHHHhCCCEEEEEChHhCCcc
Confidence 567788888888999999999999999999999966666678888644
No 70
>PRK04302 triosephosphate isomerase; Provisional
Probab=98.40 E-value=1.8e-06 Score=58.26 Aligned_cols=65 Identities=14% Similarity=0.261 Sum_probs=50.8
Q ss_pred CCcchHHHHHH-HHHhCCCCcEEEEcCC-CcccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHH
Q psy11601 12 FMQDMMPKVKW-LRENYPTLNIEVDGGV-GPNTIDECAKAGANWIVSGTAVINCPDRIQAISTLKSS 76 (82)
Q Consensus 12 ~~~~~~~ki~~-~~~~~~~~~i~~dGGI-~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~ 76 (82)
-.|+.++.+.+ +++...++|+.+-||| +++.+..+.+.|+|++++||++.+.+|+.+.+++|.+.
T Consensus 155 ~~~~~i~~~~~~ir~~~~~~pvi~GggI~~~e~~~~~~~~gadGvlVGsa~l~~~~~~~~~~~~~~~ 221 (223)
T PRK04302 155 AKPEVVEDAVEAVKKVNPDVKVLCGAGISTGEDVKAALELGADGVLLASGVVKAKDPEAALRDLVSP 221 (223)
T ss_pred CCHHHHHHHHHHHHhccCCCEEEEECCCCCHHHHHHHHcCCCCEEEEehHHhCCcCHHHHHHHHHhh
Confidence 34555555433 5554446899999999 66777788889999999999999999999998887654
No 71
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=98.36 E-value=1.5e-06 Score=58.39 Aligned_cols=47 Identities=15% Similarity=0.043 Sum_probs=42.1
Q ss_pred HHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCC
Q psy11601 17 MPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINC 63 (82)
Q Consensus 17 ~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~ 63 (82)
.+-|+.++...|+++++..|||+.+|+.+|+++|+...+.||.++..
T Consensus 132 ~~yikal~~plp~~~l~ptGGV~~~n~~~~l~ag~~~~~ggs~l~~~ 178 (201)
T PRK06015 132 AAFLKALSSPLAGTFFCPTGGISLKNARDYLSLPNVVCVGGSWVAPK 178 (201)
T ss_pred HHHHHHHHhhCCCCcEEecCCCCHHHHHHHHhCCCeEEEEchhhCCc
Confidence 35688888888999999999999999999999999988888999864
No 72
>TIGR01740 pyrF orotidine 5'-phosphate decarboxylase, subfamily 1. This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. In many eukaryotes, the region hit by this model is part of a multifunctional protein.
Probab=98.34 E-value=1.7e-06 Score=58.08 Aligned_cols=44 Identities=18% Similarity=0.376 Sum_probs=38.7
Q ss_pred cEEEEcCCCcc---cH--------HHHHHcCCCEEEEeccccCCCCHHHHHHHHH
Q psy11601 31 NIEVDGGVGPN---TI--------DECAKAGANWIVSGTAVINCPDRIQAISTLK 74 (82)
Q Consensus 31 ~i~~dGGI~~~---ni--------~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~ 74 (82)
.+.+.+||+++ .. +.+.++|+|.+|+|++||+++||.+++++++
T Consensus 159 ~~~vtPGI~~~g~~~~dq~~~~~~~~~~~~Gad~iVvGr~I~~~~d~~~~~~~~~ 213 (213)
T TIGR01740 159 FLILTPGIRLQSKGADDQQRVVTLEDAKEAGADVIIVGRGIYAAEDPVEAAKRIR 213 (213)
T ss_pred ceEEeCCcCCCCCCcCCccccCCHHHHHHcCCCEEEEChhhcCCCCHHHHHHHhC
Confidence 47899999987 33 8899999999999999999999999888764
No 73
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=98.33 E-value=1.9e-06 Score=60.37 Aligned_cols=59 Identities=20% Similarity=0.380 Sum_probs=50.9
Q ss_pred CcchHHHHHHHHHhCCCCcEEEEc--CCCcccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHH
Q psy11601 13 MQDMMPKVKWLRENYPTLNIEVDG--GVGPNTIDECAKAGANWIVSGTAVINCPDRIQAISTLK 74 (82)
Q Consensus 13 ~~~~~~ki~~~~~~~~~~~i~~dG--GI~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~ 74 (82)
.+-.++.|+++++.. ++|+++.| ||+.+|+.++.++|++.+.++|+++. ++.++++++.
T Consensus 185 ~~l~~~~L~~i~~~~-~iPlV~hG~SGI~~e~~~~~i~~G~~kinv~T~i~~--a~~~a~~~~~ 245 (281)
T PRK06806 185 PNLRFDRLQEINDVV-HIPLVLHGGSGISPEDFKKCIQHGIRKINVATATFN--SVITAVNNLV 245 (281)
T ss_pred CccCHHHHHHHHHhc-CCCEEEECCCCCCHHHHHHHHHcCCcEEEEhHHHHH--HHHHHHHHHH
Confidence 345788899998876 69999999 99999999999999999999999996 5676666654
No 74
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=98.33 E-value=1.6e-06 Score=58.14 Aligned_cols=53 Identities=19% Similarity=0.290 Sum_probs=46.4
Q ss_pred chHHHHHHHHHhCCCCcEEEEcCC-CcccHHHHHHcCCCEEEEeccccCCCCHHH
Q psy11601 15 DMMPKVKWLRENYPTLNIEVDGGV-GPNTIDECAKAGANWIVSGTAVINCPDRIQ 68 (82)
Q Consensus 15 ~~~~ki~~~~~~~~~~~i~~dGGI-~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~ 68 (82)
..++.++++++.. ++|+.+.||| +++++.++.+.|||++.+||+|++.+|+..
T Consensus 164 ~~~~~l~~i~~~~-~ipvia~GGI~~~~~~~~~l~~GadgV~vGsal~~~~~~~~ 217 (219)
T cd04729 164 PDFELLKELRKAL-GIPVIAEGRINSPEQAAKALELGADAVVVGSAITRPEHITG 217 (219)
T ss_pred CCHHHHHHHHHhc-CCCEEEeCCCCCHHHHHHHHHCCCCEEEEchHHhChHhHhh
Confidence 3567788888776 6999999999 699999999999999999999999888753
No 75
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=98.33 E-value=9.6e-07 Score=62.07 Aligned_cols=52 Identities=17% Similarity=0.350 Sum_probs=42.2
Q ss_pred CCCcchHHHHHHHHH-hCCCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccC
Q psy11601 11 KFMQDMMPKVKWLRE-NYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVIN 62 (82)
Q Consensus 11 ~~~~~~~~ki~~~~~-~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~ 62 (82)
+|.|+.+++..++.+ ..+++.+++.||||++|+.+|++.|+|.+++|+..+.
T Consensus 217 n~~~e~l~~av~~~~~~~~~~~leaSGGI~~~ni~~yA~tGvD~Is~gal~~a 269 (284)
T PRK06096 217 KFSPQQATEIAQIAPSLAPHCTLSLAGGINLNTLKNYADCGIRLFITSAPYYA 269 (284)
T ss_pred CCCHHHHHHHHHHhhccCCCeEEEEECCCCHHHHHHHHhcCCCEEEECccccC
Confidence 567777777666433 3567899999999999999999999999988877443
No 76
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=98.33 E-value=8.9e-07 Score=58.73 Aligned_cols=51 Identities=18% Similarity=0.319 Sum_probs=40.6
Q ss_pred CCCCCCcchHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcC-CCEEEEeccccCCC
Q psy11601 8 GGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAG-ANWIVSGTAVINCP 64 (82)
Q Consensus 8 ~gq~~~~~~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~G-ad~vv~gs~i~~~~ 64 (82)
.|+.+.-+. +++++ .++|+.++|||+++|+.++.+.+ ++++.++|++..++
T Consensus 137 ~g~~~~~~~---l~~~~---~~~PvilaGGI~~~Nv~~~i~~~~~~gvdv~S~ie~~p 188 (203)
T cd00405 137 TGKTFDWSL---LRGLA---SRKPVILAGGLTPDNVAEAIRLVRPYGVDVSSGVETSP 188 (203)
T ss_pred CcceEChHH---hhccc---cCCCEEEECCCChHHHHHHHHhcCCCEEEcCCcccCCC
Confidence 355554444 44444 35899999999999999999999 99999999999763
No 77
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=98.33 E-value=9.2e-07 Score=61.52 Aligned_cols=44 Identities=23% Similarity=0.348 Sum_probs=34.2
Q ss_pred HHHHHHHHhC-CCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccC
Q psy11601 18 PKVKWLRENY-PTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVIN 62 (82)
Q Consensus 18 ~ki~~~~~~~-~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~ 62 (82)
+.++++.+.. ..+|++++|||+++|+.+|+++|+|++++ |+++.
T Consensus 210 e~lk~~v~~~~~~ipi~AsGGI~~~ni~~~a~~Gvd~Isv-gait~ 254 (265)
T TIGR00078 210 EEIKEAVQLLKGRVLLEASGGITLDNLEEYAETGVDVISS-GALTH 254 (265)
T ss_pred HHHHHHHHHhcCCCcEEEECCCCHHHHHHHHHcCCCEEEe-CHHHc
Confidence 4455544432 24899999999999999999999999999 44544
No 78
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=98.32 E-value=2.3e-06 Score=57.43 Aligned_cols=50 Identities=18% Similarity=0.268 Sum_probs=43.0
Q ss_pred cchHHHHHHHHHhCCCCcEEEEcCCCc-ccHHHHHHcCCCEEEEeccccCCC
Q psy11601 14 QDMMPKVKWLRENYPTLNIEVDGGVGP-NTIDECAKAGANWIVSGTAVINCP 64 (82)
Q Consensus 14 ~~~~~ki~~~~~~~~~~~i~~dGGI~~-~ni~~~~~~Gad~vv~gs~i~~~~ 64 (82)
...++.++++++.. ++|+++.|||+. +|+.+++..|+|+|++||+++...
T Consensus 142 ~~~~~~i~~i~~~~-~~Pvi~~GGI~~~~~v~~~l~~GadgV~vgS~l~~~~ 192 (236)
T cd04730 142 IGTFALVPEVRDAV-DIPVIAAGGIADGRGIAAALALGADGVQMGTRFLATE 192 (236)
T ss_pred cCHHHHHHHHHHHh-CCCEEEECCCCCHHHHHHHHHcCCcEEEEchhhhcCc
Confidence 35677788888765 589999999997 999999999999999999998743
No 79
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=98.30 E-value=2.3e-06 Score=58.31 Aligned_cols=47 Identities=26% Similarity=0.319 Sum_probs=42.0
Q ss_pred HHHHHHHHHhCCCCcEEEEcCCCc--ccHHHHHHcCCCEEEEeccccCC
Q psy11601 17 MPKVKWLRENYPTLNIEVDGGVGP--NTIDECAKAGANWIVSGTAVINC 63 (82)
Q Consensus 17 ~~ki~~~~~~~~~~~i~~dGGI~~--~ni~~~~~~Gad~vv~gs~i~~~ 63 (82)
..-|+.++...|+++++..|||++ +|+.+|+++|+..+.+||.+|..
T Consensus 146 ~~~ikal~~p~p~i~~~ptGGV~~~~~n~~~yl~aGa~avg~Gs~L~~~ 194 (222)
T PRK07114 146 PGFVKAIKGPMPWTKIMPTGGVEPTEENLKKWFGAGVTCVGMGSKLIPK 194 (222)
T ss_pred HHHHHHHhccCCCCeEEeCCCCCcchhcHHHHHhCCCEEEEEChhhcCc
Confidence 556777777788999999999999 89999999999999999999863
No 80
>PLN02591 tryptophan synthase
Probab=98.24 E-value=7.1e-06 Score=56.72 Aligned_cols=57 Identities=21% Similarity=0.339 Sum_probs=45.9
Q ss_pred CCCCCC--CCCcchHHHHHHHHHhCCCCcEEEEcCCC-cccHHHHHHcCCCEEEEeccccC
Q psy11601 5 PGFGGQ--KFMQDMMPKVKWLRENYPTLNIEVDGGVG-PNTIDECAKAGANWIVSGTAVIN 62 (82)
Q Consensus 5 pG~~gq--~~~~~~~~ki~~~~~~~~~~~i~~dGGI~-~~ni~~~~~~Gad~vv~gs~i~~ 62 (82)
.|..|. .+.++..+.++++++. .+.|+++=-||+ +++++.+.+.|||++++||++.+
T Consensus 164 ~GvTG~~~~~~~~~~~~i~~vk~~-~~~Pv~vGFGI~~~e~v~~~~~~GADGvIVGSalVk 223 (250)
T PLN02591 164 TGVTGARASVSGRVESLLQELKEV-TDKPVAVGFGISKPEHAKQIAGWGADGVIVGSAMVK 223 (250)
T ss_pred CCCcCCCcCCchhHHHHHHHHHhc-CCCceEEeCCCCCHHHHHHHHhcCCCEEEECHHHHH
Confidence 566665 3334444448888886 479999999999 99999999999999999999865
No 81
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=98.23 E-value=7.3e-06 Score=57.03 Aligned_cols=61 Identities=23% Similarity=0.231 Sum_probs=49.6
Q ss_pred CCCCCCCCcchHHHHHHHHHhCCCCcEEEEcCC-CcccHHHHHHcCCCEEEEeccccCCCCHH
Q psy11601 6 GFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGV-GPNTIDECAKAGANWIVSGTAVINCPDRI 67 (82)
Q Consensus 6 G~~gq~~~~~~~~ki~~~~~~~~~~~i~~dGGI-~~~ni~~~~~~Gad~vv~gs~i~~~~d~~ 67 (82)
|+.|....|..++.++++++.. ++||.+.||| +.+++.+++.+|||.+.++++++..+++.
T Consensus 209 g~sg~~~~~~~~~~i~~i~~~~-~ipii~~GGI~~~~da~~~l~~GAd~V~igra~l~~p~~~ 270 (296)
T cd04740 209 GLSGPAIKPIALRMVYQVYKAV-EIPIIGVGGIASGEDALEFLMAGASAVQVGTANFVDPEAF 270 (296)
T ss_pred eecCcccchHHHHHHHHHHHhc-CCCEEEECCCCCHHHHHHHHHcCCCEEEEchhhhcChHHH
Confidence 3455555666778888888875 6999999999 78999999999999999999987655543
No 82
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=98.22 E-value=2.1e-06 Score=60.51 Aligned_cols=51 Identities=16% Similarity=0.221 Sum_probs=40.8
Q ss_pred CCCcchHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCC
Q psy11601 11 KFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINC 63 (82)
Q Consensus 11 ~~~~~~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~ 63 (82)
+|.|+.+++..++.+ .++.+++.||||++|+++|++.|+|.+++|+..+.+
T Consensus 225 nmspe~l~~av~~~~--~~~~leaSGGI~~~ni~~yA~tGVD~Is~galthsa 275 (290)
T PRK06559 225 NMSLEQIEQAITLIA--GRSRIECSGNIDMTTISRFRGLAIDYVSSGSLTHSA 275 (290)
T ss_pred CCCHHHHHHHHHHhc--CceEEEEECCCCHHHHHHHHhcCCCEEEeCccccCC
Confidence 456666666555333 368899999999999999999999999999987753
No 83
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=98.18 E-value=2.9e-06 Score=59.60 Aligned_cols=50 Identities=18% Similarity=0.214 Sum_probs=38.3
Q ss_pred CCcchHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCC
Q psy11601 12 FMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINC 63 (82)
Q Consensus 12 ~~~~~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~ 63 (82)
|.|+.+++.-++.+ ...++++.||||++|+++|++.|+|.+++|+..+.+
T Consensus 223 ~s~e~l~~av~~~~--~~~~leaSGGI~~~ni~~yA~tGVD~Is~Galthsa 272 (281)
T PRK06106 223 MTPDTLREAVAIVA--GRAITEASGRITPETAPAIAASGVDLISVGWLTHSA 272 (281)
T ss_pred CCHHHHHHHHHHhC--CCceEEEECCCCHHHHHHHHhcCCCEEEeChhhcCC
Confidence 44544444433322 357899999999999999999999999999987753
No 84
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=98.18 E-value=3.1e-06 Score=59.82 Aligned_cols=52 Identities=27% Similarity=0.389 Sum_probs=41.1
Q ss_pred CCCcchHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCCC
Q psy11601 11 KFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINCP 64 (82)
Q Consensus 11 ~~~~~~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~~ 64 (82)
+|.|+.+++..++.+ .++.+++.||||++|+.+|++.|+|.+++|+....++
T Consensus 233 nmspe~l~~av~~~~--~~~~lEaSGGIt~~ni~~yA~tGVD~IS~galthsa~ 284 (294)
T PRK06978 233 NFTLDMMREAVRVTA--GRAVLEVSGGVNFDTVRAFAETGVDRISIGALTKDVR 284 (294)
T ss_pred CCCHHHHHHHHHhhc--CCeEEEEECCCCHHHHHHHHhcCCCEEEeCccccCCc
Confidence 456666655444332 3678999999999999999999999999999887654
No 85
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=98.18 E-value=3.2e-06 Score=59.27 Aligned_cols=54 Identities=20% Similarity=0.267 Sum_probs=43.9
Q ss_pred CCCcchHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCCC
Q psy11601 11 KFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINCP 64 (82)
Q Consensus 11 ~~~~~~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~~ 64 (82)
.|.|+.+++.-++....+++.+++.|||+++|+++|+..|+|.|++|+.....+
T Consensus 216 Nm~~e~~~~av~~l~~~~~~~lEaSGgIt~~ni~~yA~tGVD~IS~galths~~ 269 (280)
T COG0157 216 NMSPEELKEAVKLLGLAGRALLEASGGITLENIREYAETGVDVISVGALTHSAP 269 (280)
T ss_pred CCCHHHHHHHHHHhccCCceEEEEeCCCCHHHHHHHhhcCCCEEEeCccccCCc
Confidence 466777766665544556789999999999999999999999999998777644
No 86
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=98.17 E-value=3.1e-06 Score=59.47 Aligned_cols=52 Identities=23% Similarity=0.249 Sum_probs=40.7
Q ss_pred CCCcchHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCCC
Q psy11601 11 KFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINCP 64 (82)
Q Consensus 11 ~~~~~~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~~ 64 (82)
+|.|+.+++..++.+ ....+++.||||++|+.+|++.|+|.+++|+..+..+
T Consensus 221 n~s~e~l~~av~~~~--~~~~leaSGgI~~~ni~~yA~tGVD~Is~galths~~ 272 (281)
T PRK06543 221 NFSLDDLREGVELVD--GRAIVEASGNVNLNTVGAIASTGVDVISVGALTHSVR 272 (281)
T ss_pred CCCHHHHHHHHHHhC--CCeEEEEECCCCHHHHHHHHhcCCCEEEeCccccCCc
Confidence 456666655554332 3468999999999999999999999999999877643
No 87
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=98.16 E-value=1.2e-05 Score=56.24 Aligned_cols=62 Identities=21% Similarity=0.180 Sum_probs=50.5
Q ss_pred CCCCCCCcchHHHHHHHHHhCCCCcEEEEcCC-CcccHHHHHHcCCCEEEEeccccCCCCHHHH
Q psy11601 7 FGGQKFMQDMMPKVKWLRENYPTLNIEVDGGV-GPNTIDECAKAGANWIVSGTAVINCPDRIQA 69 (82)
Q Consensus 7 ~~gq~~~~~~~~ki~~~~~~~~~~~i~~dGGI-~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~ 69 (82)
+.|....|..++.++++++.. ++||.+.||| +.+.+.+++.+|||.+.++++++..+++...
T Consensus 213 ~sg~~~~p~~l~~v~~i~~~~-~ipvi~~GGI~~~~da~~~l~aGAd~V~igr~ll~~P~~~~~ 275 (301)
T PRK07259 213 LSGPAIKPIALRMVYQVYQAV-DIPIIGMGGISSAEDAIEFIMAGASAVQVGTANFYDPYAFPK 275 (301)
T ss_pred cCCcCcccccHHHHHHHHHhC-CCCEEEECCCCCHHHHHHHHHcCCCceeEcHHHhcCcHHHHH
Confidence 445555666788899988876 6999999999 7999999999999999999998865554433
No 88
>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)
Probab=98.16 E-value=5.5e-06 Score=58.88 Aligned_cols=48 Identities=21% Similarity=0.266 Sum_probs=38.8
Q ss_pred hHHHHHHHHHh-CCCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCC
Q psy11601 16 MMPKVKWLREN-YPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINC 63 (82)
Q Consensus 16 ~~~ki~~~~~~-~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~ 63 (82)
..+.++++.+. ....++++.||||++|+.+|++.|+|.+++|+..+.+
T Consensus 248 ~~e~l~~av~~~~~~~~lEaSGGIt~~ni~~yA~tGVD~Is~Galthsa 296 (308)
T PLN02716 248 DVSMLKEAVELINGRFETEASGNVTLDTVHKIGQTGVTYISSGALTHSV 296 (308)
T ss_pred CHHHHHHHHHhhCCCceEEEECCCCHHHHHHHHHcCCCEEEeCccccCC
Confidence 55666665443 2357899999999999999999999999999987753
No 89
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=98.13 E-value=6.1e-06 Score=58.15 Aligned_cols=61 Identities=20% Similarity=0.218 Sum_probs=51.6
Q ss_pred cchHHHHHHHHHhCCCCcEEEEcC--CCcccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHH
Q psy11601 14 QDMMPKVKWLRENYPTLNIEVDGG--VGPNTIDECAKAGANWIVSGTAVINCPDRIQAISTLKSS 76 (82)
Q Consensus 14 ~~~~~ki~~~~~~~~~~~i~~dGG--I~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~ 76 (82)
+-.++.|+++++..+++|+++.|| |+.+|+..+.++|++.|-++|.++. ++.++++++.+.
T Consensus 187 ~l~~e~L~~i~~~~~~iPlVlhGGSGi~~e~~~~~i~~Gi~KiNv~T~i~~--~~~~~~~~~~~~ 249 (293)
T PRK07315 187 GLDLDHLEKLTEAVPGFPIVLHGGSGIPDDQIQEAIKLGVAKVNVNTECQI--AFANATRKFARD 249 (293)
T ss_pred cCCHHHHHHHHHhccCCCEEEECCCCCCHHHHHHHHHcCCCEEEEccHHHH--HHHHHHHHHHHh
Confidence 467888999988765699999999 9999999999999999999999985 666666665543
No 90
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=98.12 E-value=1.1e-05 Score=56.26 Aligned_cols=64 Identities=22% Similarity=0.080 Sum_probs=48.5
Q ss_pred CcchHHHHHHHHHhCCCCcEEEEcCC-CcccHHHHHHcCCCEEEEeccccCCCCHHHHH-HHHHHHH
Q psy11601 13 MQDMMPKVKWLRENYPTLNIEVDGGV-GPNTIDECAKAGANWIVSGTAVINCPDRIQAI-STLKSSV 77 (82)
Q Consensus 13 ~~~~~~ki~~~~~~~~~~~i~~dGGI-~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~-~~l~~~~ 77 (82)
.|-.++.++++++.. ++||.+.||| +.+.+.+++.+|||.+.+|++++..+++...+ +.|.+.+
T Consensus 219 ~~~~l~~v~~i~~~~-~ipvi~~GGI~s~~da~~~l~~GAd~V~igr~~l~~p~~~~~i~~~l~~~~ 284 (300)
T TIGR01037 219 KPIALRMVYDVYKMV-DIPIIGVGGITSFEDALEFLMAGASAVQVGTAVYYRGFAFKKIIEGLIAFL 284 (300)
T ss_pred hHHHHHHHHHHHhcC-CCCEEEECCCCCHHHHHHHHHcCCCceeecHHHhcCchHHHHHHHHHHHHH
Confidence 344567788888765 5999999999 79999999999999999999988766544333 3344433
No 91
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=98.10 E-value=5.3e-06 Score=58.67 Aligned_cols=51 Identities=24% Similarity=0.318 Sum_probs=39.1
Q ss_pred CCCcchHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCC
Q psy11601 11 KFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINC 63 (82)
Q Consensus 11 ~~~~~~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~ 63 (82)
+|.|+.++++-++. .+++.+++.|||+++|+.+|++.|+|.+++|+..-.+
T Consensus 236 n~s~e~~~~av~~~--~~~~~ieaSGGI~~~ni~~yA~tGVD~Is~galthsa 286 (296)
T PRK09016 236 NFTTEQMREAVKRT--NGRALLEVSGNVTLETLREFAETGVDFISVGALTKHV 286 (296)
T ss_pred CCChHHHHHHHHhh--cCCeEEEEECCCCHHHHHHHHhcCCCEEEeCccccCC
Confidence 35555555544422 2468999999999999999999999999999866543
No 92
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=98.08 E-value=4.6e-06 Score=57.70 Aligned_cols=62 Identities=26% Similarity=0.254 Sum_probs=49.6
Q ss_pred CCCCCcchHHHHHHHHHhCC-CCcEEEEcCCC-cccHHHHHHcCCCEEEEeccccCC-CCHHHHH
Q psy11601 9 GQKFMQDMMPKVKWLRENYP-TLNIEVDGGVG-PNTIDECAKAGANWIVSGTAVINC-PDRIQAI 70 (82)
Q Consensus 9 gq~~~~~~~~ki~~~~~~~~-~~~i~~dGGI~-~~ni~~~~~~Gad~vv~gs~i~~~-~d~~~~~ 70 (82)
|....+..++.++++++..+ ++||.+.|||+ .+++.+++.+|||.+.++++++.. +++...+
T Consensus 222 g~~~~~~~~~~v~~i~~~~~~~ipiia~GGI~~~~da~~~l~~GAd~V~vg~a~~~~GP~~~~~i 286 (289)
T cd02810 222 GAPIRPLALRWVARLAARLQLDIPIIGVGGIDSGEDVLEMLMAGASAVQVATALMWDGPDVIRKI 286 (289)
T ss_pred cHHHHHHHHHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHcCccHheEcHHHHhcCccHHHHH
Confidence 33334556778888888765 79999999997 799999999999999999998875 6655443
No 93
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=98.06 E-value=1.5e-05 Score=53.90 Aligned_cols=51 Identities=24% Similarity=0.244 Sum_probs=43.8
Q ss_pred cchHHHHHHHHHhCCCCcEEEEcCCC-cccHHHHHHcCCCEEEEeccccCCCC
Q psy11601 14 QDMMPKVKWLRENYPTLNIEVDGGVG-PNTIDECAKAGANWIVSGTAVINCPD 65 (82)
Q Consensus 14 ~~~~~ki~~~~~~~~~~~i~~dGGI~-~~ni~~~~~~Gad~vv~gs~i~~~~d 65 (82)
...++-++++++.. ++|+.+.|||+ .+++..+..+|++++++||+++..+.
T Consensus 179 g~~~~~i~~i~~~~-~iPvia~GGI~~~~di~~~~~~Ga~gv~vgsa~~~~~~ 230 (241)
T PRK13585 179 GVNTEPVKELVDSV-DIPVIASGGVTTLDDLRALKEAGAAGVVVGSALYKGKF 230 (241)
T ss_pred CCCHHHHHHHHHhC-CCCEEEeCCCCCHHHHHHHHHcCCCEEEEEHHHhcCCc
Confidence 34567788888775 59999999999 89999999999999999999998543
No 94
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=98.03 E-value=2.5e-05 Score=54.17 Aligned_cols=50 Identities=22% Similarity=0.330 Sum_probs=42.5
Q ss_pred CCCcchHHHHHHHHHhCCCCcEEEEcCC-CcccHHHHHHcCCCEEEEeccccC
Q psy11601 11 KFMQDMMPKVKWLRENYPTLNIEVDGGV-GPNTIDECAKAGANWIVSGTAVIN 62 (82)
Q Consensus 11 ~~~~~~~~ki~~~~~~~~~~~i~~dGGI-~~~ni~~~~~~Gad~vv~gs~i~~ 62 (82)
.+.+...+.++++++.. +.|+++-+|| +++++.++.+. ||++++||++.+
T Consensus 183 ~~~~~~~~~i~~vk~~~-~~pv~vGfGI~~~e~v~~~~~~-ADGviVGSaiv~ 233 (258)
T PRK13111 183 ADAADLAELVARLKAHT-DLPVAVGFGISTPEQAAAIAAV-ADGVIVGSALVK 233 (258)
T ss_pred CCCccHHHHHHHHHhcC-CCcEEEEcccCCHHHHHHHHHh-CCEEEEcHHHHH
Confidence 45556666888899876 7999999999 77999999975 999999999875
No 95
>cd01571 NAPRTase_B Nicotinate phosphoribosyltransferase (NAPRTase), subgroup B. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products.
Probab=98.01 E-value=1.1e-05 Score=57.09 Aligned_cols=51 Identities=25% Similarity=0.511 Sum_probs=41.5
Q ss_pred CcchHHHHHHHHH-h-CCCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCC
Q psy11601 13 MQDMMPKVKWLRE-N-YPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINC 63 (82)
Q Consensus 13 ~~~~~~ki~~~~~-~-~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~ 63 (82)
.++.++++++..+ . .+++.|++.||||++|+.++.+.|+|.+.+|+.+...
T Consensus 227 ~~~~~~~~~~~l~~~g~~~~~ieaSGgI~~~~i~~~a~~gvD~isvGs~~~~~ 279 (302)
T cd01571 227 FRYLIREVRWALDIRGYKHVKIFVSGGLDEEDIKELEDVGVDAFGVGTAISKA 279 (302)
T ss_pred HHHHHHHHHHHHHhCCCCCeEEEEeCCCCHHHHHHHHHcCCCEEECCcccCCC
Confidence 3445677776443 3 3678899999999999999999999999999998864
No 96
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=97.99 E-value=1.4e-05 Score=53.33 Aligned_cols=57 Identities=12% Similarity=0.257 Sum_probs=47.1
Q ss_pred cchHHHHHHHHHhCCCCcEEEEcCC-CcccHHHHHHc-CCCEEEEeccccCCCCHHHHHH
Q psy11601 14 QDMMPKVKWLRENYPTLNIEVDGGV-GPNTIDECAKA-GANWIVSGTAVINCPDRIQAIS 71 (82)
Q Consensus 14 ~~~~~ki~~~~~~~~~~~i~~dGGI-~~~ni~~~~~~-Gad~vv~gs~i~~~~d~~~~~~ 71 (82)
+..++.++++++.. ++||.+.||| +.+.+.++.+. |+|.+.+|++++..+++-..+.
T Consensus 169 ~~~~~~~~~i~~~~-~ipvi~~Ggi~~~~d~~~~l~~~gad~V~igr~~l~~P~~~~~~~ 227 (231)
T cd02801 169 PADWDYIAEIKEAV-SIPVIANGDIFSLEDALRCLEQTGVDGVMIGRGALGNPWLFREIK 227 (231)
T ss_pred CCCHHHHHHHHhCC-CCeEEEeCCCCCHHHHHHHHHhcCCCEEEEcHHhHhCCHHHHhhh
Confidence 55677788888764 6999999999 79999999998 8999999999998776655443
No 97
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=97.92 E-value=5.8e-05 Score=50.49 Aligned_cols=62 Identities=16% Similarity=0.263 Sum_probs=48.2
Q ss_pred CcchHHHHHHHHHhCCCCcEEEEcCC-CcccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHHHHH
Q psy11601 13 MQDMMPKVKWLRENYPTLNIEVDGGV-GPNTIDECAKAGANWIVSGTAVINCPDRIQAISTLKSSVQK 79 (82)
Q Consensus 13 ~~~~~~ki~~~~~~~~~~~i~~dGGI-~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~~~~ 79 (82)
....++-++++++. .+|+.+.|+| +++.+.+.+++||+.+|+||+|.. |....++|.+.+++
T Consensus 130 ~~pD~~lv~~l~~~--~~pvIaEGri~tpe~a~~al~~GA~aVVVGsAITr---P~~It~~F~~ai~~ 192 (192)
T PF04131_consen 130 DGPDFELVRELVQA--DVPVIAEGRIHTPEQAAKALELGAHAVVVGSAITR---PQEITKRFVDAIKK 192 (192)
T ss_dssp SSHHHHHHHHHHHT--TSEEEEESS--SHHHHHHHHHTT-SEEEE-HHHH----HHHHHHHHHHHCHH
T ss_pred CCCCHHHHHHHHhC--CCcEeecCCCCCHHHHHHHHhcCCeEEEECcccCC---HHHHHHHHHHHHhC
Confidence 45578889998886 5899999999 789999999999999999999995 55666777766653
No 98
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=97.92 E-value=3.6e-05 Score=52.42 Aligned_cols=54 Identities=26% Similarity=0.303 Sum_probs=41.3
Q ss_pred CCCCCCCcchHHHHHHHHHhCCCCcEEEEcCC-CcccHHHHHHcCCCEEEEeccccCC
Q psy11601 7 FGGQKFMQDMMPKVKWLRENYPTLNIEVDGGV-GPNTIDECAKAGANWIVSGTAVINC 63 (82)
Q Consensus 7 ~~gq~~~~~~~~ki~~~~~~~~~~~i~~dGGI-~~~ni~~~~~~Gad~vv~gs~i~~~ 63 (82)
+.|..-.+ +.++++++...+.|+.+-||| +++.+++++++|||.+|+||+++..
T Consensus 156 ~SG~~~~~---e~I~~v~~~~~~~pl~vGGGIrs~e~a~~l~~aGAD~VVVGsai~~~ 210 (219)
T cd02812 156 YSGAYGPP---EVVRAVKKVLGDTPLIVGGGIRSGEQAKEMAEAGADTIVVGNIVEED 210 (219)
T ss_pred CCCCcCCH---HHHHHHHHhcCCCCEEEeCCCCCHHHHHHHHHcCCCEEEECchhhCC
Confidence 44555334 444555554325899999999 7899999999999999999999975
No 99
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=97.90 E-value=7.1e-05 Score=51.36 Aligned_cols=58 Identities=22% Similarity=0.308 Sum_probs=43.9
Q ss_pred HHHHHHHHHhCCCCcEEEEcCCCcc-cHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHH
Q psy11601 17 MPKVKWLRENYPTLNIEVDGGVGPN-TIDECAKAGANWIVSGTAVINCPDRIQAISTLKSS 76 (82)
Q Consensus 17 ~~ki~~~~~~~~~~~i~~dGGI~~~-ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~ 76 (82)
.+.++++++.....|+.+-|||+-. ++++++.+|||++|+||++.. |+.+.++++++.
T Consensus 172 ~e~I~~v~~~~~~~pvivGGGIrs~e~a~~~l~~GAD~VVVGSai~~--d~~~~~~~~~~~ 230 (232)
T PRK04169 172 PEMVKAVKKALDITPLIYGGGIRSPEQARELMAAGADTIVVGNIIEE--DPKKTVKAIKKA 230 (232)
T ss_pred HHHHHHHHHhcCCCcEEEECCCCCHHHHHHHHHhCCCEEEEChHHhh--CHHHHHHHHHhh
Confidence 4555666665422399999999887 999999999999999999984 555666666554
No 100
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=97.89 E-value=5.4e-05 Score=48.10 Aligned_cols=41 Identities=15% Similarity=0.274 Sum_probs=33.9
Q ss_pred HHHHHHHHHhCCCCcEEEEcCCCc-ccHHHHHHcCCCEEEEec
Q psy11601 17 MPKVKWLRENYPTLNIEVDGGVGP-NTIDECAKAGANWIVSGT 58 (82)
Q Consensus 17 ~~ki~~~~~~~~~~~i~~dGGI~~-~ni~~~~~~Gad~vv~gs 58 (82)
...+.++++. .++|+.++|||+. +++.++.++|||++++||
T Consensus 159 ~~~~~~~~~~-~~~pi~~~GGi~~~~~~~~~~~~Gad~v~vgs 200 (200)
T cd04722 159 DLLLILAKRG-SKVPVIAGGGINDPEDAAEALALGADGVIVGS 200 (200)
T ss_pred HHHHHHHHhc-CCCCEEEECCCCCHHHHHHHHHhCCCEEEecC
Confidence 3445555544 4799999999999 999999999999999986
No 101
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=97.88 E-value=2.9e-05 Score=53.88 Aligned_cols=47 Identities=17% Similarity=0.228 Sum_probs=40.2
Q ss_pred hHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCC
Q psy11601 16 MMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINC 63 (82)
Q Consensus 16 ~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~ 63 (82)
-.+-|+++.+.. ++|+++-|||+.++++.++++||+.+++||.++..
T Consensus 64 n~~~i~~i~~~~-~~~v~vGGGIr~e~v~~~l~aGa~rVvIGS~av~~ 110 (253)
T TIGR02129 64 NDDAAKEALHAY-PGGLQVGGGINDTNAQEWLDEGASHVIVTSWLFTK 110 (253)
T ss_pred cHHHHHHHHHhC-CCCEEEeCCcCHHHHHHHHHcCCCEEEECcHHHhC
Confidence 345566666654 58999999999999999999999999999999874
No 102
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=97.86 E-value=9.5e-05 Score=51.45 Aligned_cols=68 Identities=18% Similarity=0.248 Sum_probs=49.3
Q ss_pred CCCCCcchHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCCC------CHHHHHHHHHHHHHHhh
Q psy11601 9 GQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINCP------DRIQAISTLKSSVQKYL 81 (82)
Q Consensus 9 gq~~~~~~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~~------d~~~~~~~l~~~~~~~~ 81 (82)
|+.+..+.+ +++++..++.|+.+-||++++|+.++++. +|+++++|.+=... | .+.+++|.+.+++.+
T Consensus 183 G~~~d~~~l---~~vr~~~~~~PvllggGvt~eNv~e~l~~-adGviVgS~~K~~G~~~n~~D-~~rV~~Fm~~v~~~~ 256 (257)
T TIGR00259 183 GTEVDLELL---KLAKETVKDTPVLAGSGVNLENVEELLSI-ADGVIVATTIKKDGVFNNFVD-QARVSQFVEKVAHGL 256 (257)
T ss_pred CCCCCHHHH---HHHHhccCCCeEEEECCCCHHHHHHHHhh-CCEEEECCCcccCCccCCCcC-HHHHHHHHHHHHHhc
Confidence 566555555 45555445689999999999999999997 99999999974322 3 246677776666554
No 103
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=97.82 E-value=6.2e-05 Score=52.29 Aligned_cols=63 Identities=22% Similarity=0.277 Sum_probs=49.4
Q ss_pred cchHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCCCC---H--HHHHHHHHHHHH
Q psy11601 14 QDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINCPD---R--IQAISTLKSSVQ 78 (82)
Q Consensus 14 ~~~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~~d---~--~~~~~~l~~~~~ 78 (82)
|..+++|+++|+..+ +|+.+-+|+|.+|+.++++. ||++++||++=...+ + .+.+++|-+..+
T Consensus 186 ~~~~~~l~~vr~~~~-~PVlvGSGvt~~Ni~~~l~~-ADG~IVGS~~K~~G~~~n~VD~~Rv~~fm~~v~ 253 (254)
T PF03437_consen 186 PPDPEKLKRVREAVP-VPVLVGSGVTPENIAEYLSY-ADGAIVGSYFKKDGKWENPVDPERVRRFMEAVK 253 (254)
T ss_pred CCCHHHHHHHHhcCC-CCEEEecCCCHHHHHHHHHh-CCEEEEeeeeeeCCEeCCcCCHHHHHHHHHHhh
Confidence 467888899998876 99999999999999999876 999999999754221 1 356666665544
No 104
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=97.82 E-value=6.6e-05 Score=52.71 Aligned_cols=56 Identities=16% Similarity=0.293 Sum_probs=46.4
Q ss_pred chHHHHHHHHHhCCCCcEEEEcCCC-cccHHHHHHc-CCCEEEEeccccCCCCHHHHHH
Q psy11601 15 DMMPKVKWLRENYPTLNIEVDGGVG-PNTIDECAKA-GANWIVSGTAVINCPDRIQAIS 71 (82)
Q Consensus 15 ~~~~ki~~~~~~~~~~~i~~dGGI~-~~ni~~~~~~-Gad~vv~gs~i~~~~d~~~~~~ 71 (82)
..++.++++++.. ++||.+.|||+ .+++.++++. |+|.|.+|++++..+|+...++
T Consensus 268 ~~~~~~~~ir~~~-~iPVi~~Ggi~t~~~a~~~l~~g~aD~V~igR~~ladP~l~~k~~ 325 (327)
T cd02803 268 YFLELAEKIKKAV-KIPVIAVGGIRDPEVAEEILAEGKADLVALGRALLADPDLPNKAR 325 (327)
T ss_pred hhHHHHHHHHHHC-CCCEEEeCCCCCHHHHHHHHHCCCCCeeeecHHHHhCccHHHHHh
Confidence 3456667777765 68999999997 9999999998 7999999999998888765543
No 105
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=97.81 E-value=9.3e-05 Score=52.57 Aligned_cols=68 Identities=15% Similarity=0.242 Sum_probs=52.1
Q ss_pred ccCCCCCCCCCC-cchHHHHHHHHHhCCCCcEEEEcCC-CcccHHHHHH-cCCCEEEEeccccCCCCHHHHH
Q psy11601 2 TVEPGFGGQKFM-QDMMPKVKWLRENYPTLNIEVDGGV-GPNTIDECAK-AGANWIVSGTAVINCPDRIQAI 70 (82)
Q Consensus 2 ~v~pG~~gq~~~-~~~~~ki~~~~~~~~~~~i~~dGGI-~~~ni~~~~~-~Gad~vv~gs~i~~~~d~~~~~ 70 (82)
+||+....|.+. +..++.++++++.. ++||.+-||| +.+.+.++.+ .|+|++.+|++++..+.+-..+
T Consensus 167 ~vh~rt~~~~~~G~a~~~~i~~ik~~~-~iPVI~nGgI~s~~da~~~l~~~gadgVmiGR~~l~nP~if~~~ 237 (321)
T PRK10415 167 TIHGRTRACLFNGEAEYDSIRAVKQKV-SIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREI 237 (321)
T ss_pred EEecCccccccCCCcChHHHHHHHHhc-CCcEEEeCCCCCHHHHHHHHhccCCCEEEEChHhhcCChHHHHH
Confidence 456665555553 35678888888875 6999999999 8999999997 7999999999988766544433
No 106
>PF01180 DHO_dh: Dihydroorotate dehydrogenase; InterPro: IPR012135 Dihydroorotate dehydrogenase (DHOD), also known as dihydroorotate oxidase, catalyses the fourth step in de novo pyrimidine biosynthesis, the stereospecific oxidation of (S)-dihydroorotate to orotate, which is the only redox reaction in this pathway. DHODs can be divided into two mains classes: class 1 cytosolic enzymes found primarily in Gram-positive bacteria, and class 2 membrane-associated enzymes found primarily in eukaryotic mitochondria and Gram-negative bacteria []. The class 1 DHODs can be further divided into subclasses 1A and 1B, which differ in their structural organisation and use of electron acceptors. The 1A enzyme is a homodimer of two PyrD subunits where each subunit forms a TIM barrel fold with a bound FMN cofactor located near the top of the barrel []. Fumarate is the natural electron acceptor for this enzyme. The 1B enzyme, in contrast is a heterotetramer composed of a central, FMN-containing, PyrD homodimer resembling the 1A homodimer, and two additional PyrK subunits which contain FAD and a 2Fe-2S cluster []. These additional groups allow the enzyme to use NAD(+) as its natural electron acceptor. The class 2 membrane-associated enzymes are monomers which have the FMN-containing TIM barrel domain found in the class 1 PyrD subunit, and an additional N-terminal alpha helical domain [, ]. These enzymes use respiratory quinones as the physiological electron acceptor. This entry represents the FMN-binding subunit common to all classes of dihydroorotate dehydrogenase.; GO: 0004152 dihydroorotate dehydrogenase activity, 0006222 UMP biosynthetic process, 0055114 oxidation-reduction process; PDB: 3GYE_A 3GZ3_A 3MHU_B 3MJY_A 3TQ0_A 2B4G_C 1EP3_A 1EP2_A 1EP1_A 3I6R_A ....
Probab=97.77 E-value=3.3e-05 Score=53.85 Aligned_cols=71 Identities=20% Similarity=0.248 Sum_probs=54.3
Q ss_pred CCCCCCCcchHHHHHHHHHhCC-CCcEEEEcCCC-cccHHHHHHcCCCEEEEeccc-cCCCCHHHHHHHHHHHHHHh
Q psy11601 7 FGGQKFMQDMMPKVKWLRENYP-TLNIEVDGGVG-PNTIDECAKAGANWIVSGTAV-INCPDRIQAISTLKSSVQKY 80 (82)
Q Consensus 7 ~~gq~~~~~~~~ki~~~~~~~~-~~~i~~dGGI~-~~ni~~~~~~Gad~vv~gs~i-~~~~d~~~~~~~l~~~~~~~ 80 (82)
..|....|-.++.++++++..+ +++|.+.|||. .+.+.+++.+||+.|-++|++ +..++ .++++.+.|+++
T Consensus 221 lSG~~i~p~aL~~V~~~~~~~~~~i~Iig~GGI~s~~da~e~l~aGA~~Vqv~Sal~~~Gp~---~~~~i~~~L~~~ 294 (295)
T PF01180_consen 221 LSGPAIRPIALRWVRELRKALGQDIPIIGVGGIHSGEDAIEFLMAGASAVQVCSALIYRGPG---VIRRINRELEEW 294 (295)
T ss_dssp EEEGGGHHHHHHHHHHHHHHTTTSSEEEEESS--SHHHHHHHHHHTESEEEESHHHHHHGTT---HHHHHHHHHHHH
T ss_pred cCchhhhhHHHHHHHHHHhccccceEEEEeCCcCCHHHHHHHHHhCCCHheechhhhhcCcH---HHHHHHHHHHhh
Confidence 5677778889999999998764 69999999995 668999999999999999998 65444 344444544443
No 107
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=97.74 E-value=3.5e-05 Score=54.75 Aligned_cols=62 Identities=19% Similarity=0.228 Sum_probs=50.7
Q ss_pred CCCCCCCCcchHHHHHHHHHhCC-CCcEEEEcCC-CcccHHHHHHcCCCEEEEeccccC-CCCHH
Q psy11601 6 GFGGQKFMQDMMPKVKWLRENYP-TLNIEVDGGV-GPNTIDECAKAGANWIVSGTAVIN-CPDRI 67 (82)
Q Consensus 6 G~~gq~~~~~~~~ki~~~~~~~~-~~~i~~dGGI-~~~ni~~~~~~Gad~vv~gs~i~~-~~d~~ 67 (82)
|+.|....+..++.++++++..+ ++||.+.||| +.+.+.+++.+|||.+-++|+++. .+++.
T Consensus 256 G~sG~~~~~~~l~~v~~l~~~~~~~ipIi~~GGI~t~~da~e~l~aGAd~V~vg~~~~~~gP~~~ 320 (327)
T cd04738 256 GLSGAPLKERSTEVLRELYKLTGGKIPIIGVGGISSGEDAYEKIRAGASLVQLYTGLVYEGPGLV 320 (327)
T ss_pred ccCChhhhHHHHHHHHHHHHHhCCCCcEEEECCCCCHHHHHHHHHcCCCHHhccHHHHhhCcHHH
Confidence 55666666777888999988753 6999999999 899999999999999999999764 35443
No 108
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.71 E-value=0.00011 Score=49.69 Aligned_cols=50 Identities=16% Similarity=0.363 Sum_probs=41.5
Q ss_pred chHHHHHHHHHhCCCCcEEEEcCCC-cccHHHHHHcCCCEEEEeccccCCCC
Q psy11601 15 DMMPKVKWLRENYPTLNIEVDGGVG-PNTIDECAKAGANWIVSGTAVINCPD 65 (82)
Q Consensus 15 ~~~~ki~~~~~~~~~~~i~~dGGI~-~~ni~~~~~~Gad~vv~gs~i~~~~d 65 (82)
...+.|+++++.. ++|+.+.|||+ .+.+..+..+||+.+++|+..+..++
T Consensus 63 ~~~~~i~~i~~~~-~~~l~v~GGi~~~~~~~~~~~~Ga~~v~iGs~~~~~~~ 113 (241)
T PRK13585 63 KNAEAIEKIIEAV-GVPVQLGGGIRSAEDAASLLDLGVDRVILGTAAVENPE 113 (241)
T ss_pred ccHHHHHHHHHHc-CCcEEEcCCcCCHHHHHHHHHcCCCEEEEChHHhhChH
Confidence 4466777777765 68999999999 67899999999999999999986443
No 109
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=97.71 E-value=0.00023 Score=49.62 Aligned_cols=58 Identities=26% Similarity=0.432 Sum_probs=49.2
Q ss_pred HHHHHHhCCCCcEEEEcCCC-cccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHHHH
Q psy11601 20 VKWLRENYPTLNIEVDGGVG-PNTIDECAKAGANWIVSGTAVINCPDRIQAISTLKSSVQ 78 (82)
Q Consensus 20 i~~~~~~~~~~~i~~dGGI~-~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~~~ 78 (82)
|+.+++. +++|+.+|+||. ++.+....+.|+|++-+.|+|++++||.+.++.++..++
T Consensus 181 l~~i~e~-~~vpVivdAGIgt~sDa~~AmElGaDgVL~nSaIakA~dP~~mA~a~~~AV~ 239 (267)
T CHL00162 181 LQIIIEN-AKIPVIIDAGIGTPSEASQAMELGASGVLLNTAVAQAKNPEQMAKAMKLAVQ 239 (267)
T ss_pred HHHHHHc-CCCcEEEeCCcCCHHHHHHHHHcCCCEEeecceeecCCCHHHHHHHHHHHHH
Confidence 4445554 469999999995 688999999999999999999999999888888887664
No 110
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=97.71 E-value=0.00013 Score=49.91 Aligned_cols=52 Identities=21% Similarity=0.367 Sum_probs=44.7
Q ss_pred CcchHHHHHHHHHhCCCCcEEEEcCCC-cccHHHHHHcCCCEEEEeccccCCCC
Q psy11601 13 MQDMMPKVKWLRENYPTLNIEVDGGVG-PNTIDECAKAGANWIVSGTAVINCPD 65 (82)
Q Consensus 13 ~~~~~~ki~~~~~~~~~~~i~~dGGI~-~~ni~~~~~~Gad~vv~gs~i~~~~d 65 (82)
.+..++-++++++.. ++|+.+.|||+ .+.+..+...|++.+++|+..+..++
T Consensus 59 ~~~~~~~i~~i~~~~-~ipv~~~GGi~s~~~~~~~l~~Ga~~Viigt~~l~~p~ 111 (253)
T PRK02083 59 RDTMLDVVERVAEQV-FIPLTVGGGIRSVEDARRLLRAGADKVSINSAAVANPE 111 (253)
T ss_pred CcchHHHHHHHHHhC-CCCEEeeCCCCCHHHHHHHHHcCCCEEEEChhHhhCcH
Confidence 356777888887765 68999999998 89999999999999999999987554
No 111
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=97.69 E-value=0.00012 Score=50.17 Aligned_cols=51 Identities=25% Similarity=0.412 Sum_probs=42.4
Q ss_pred chHHHHHHHHHhCCCCcEEEEcCCC-cccHHHHHHcCCCEEEEeccccCCCCH
Q psy11601 15 DMMPKVKWLRENYPTLNIEVDGGVG-PNTIDECAKAGANWIVSGTAVINCPDR 66 (82)
Q Consensus 15 ~~~~ki~~~~~~~~~~~i~~dGGI~-~~ni~~~~~~Gad~vv~gs~i~~~~d~ 66 (82)
..++-++++++.. .+|+.+.|||+ .+.+..++.+||+.+++|+..+..++.
T Consensus 61 ~n~~~i~~i~~~~-~~pv~~~GGi~s~~d~~~~~~~Ga~~vivgt~~~~~p~~ 112 (254)
T TIGR00735 61 TMIDVVERTAETV-FIPLTVGGGIKSIEDVDKLLRAGADKVSINTAAVKNPEL 112 (254)
T ss_pred hhHHHHHHHHHhc-CCCEEEECCCCCHHHHHHHHHcCCCEEEEChhHhhChHH
Confidence 3456667776664 58999999998 999999999999999999999975543
No 112
>PRK07188 nicotinate phosphoribosyltransferase; Provisional
Probab=97.67 E-value=0.0001 Score=53.30 Aligned_cols=52 Identities=17% Similarity=0.280 Sum_probs=43.7
Q ss_pred CCcchHHHHHH-HHHhC-CCCcEEEEcCCCcccHHHHHHcC--CCEEEEeccccCC
Q psy11601 12 FMQDMMPKVKW-LRENY-PTLNIEVDGGVGPNTIDECAKAG--ANWIVSGTAVINC 63 (82)
Q Consensus 12 ~~~~~~~ki~~-~~~~~-~~~~i~~dGGI~~~ni~~~~~~G--ad~vv~gs~i~~~ 63 (82)
+.++.+.++++ +.+.. +++.|.|.|||+++|+.+|.++| +|.+-+|+.|...
T Consensus 261 ~~~~l~~~vr~~Ld~~g~~~vkI~aSgGine~~I~~~~~~g~piD~~GVGt~l~~~ 316 (352)
T PRK07188 261 VNPELIKALRKALDENGGKHVKIIVSSGFDAKKIREFEAQNVPVDIYGVGSSLLKI 316 (352)
T ss_pred ccHHHHHHHHHHHhhCCCCCcEEEEeCCCCHHHHHHHHHcCCCccEEecCcccccC
Confidence 56777777776 44444 78999999999999999999999 7999999998864
No 113
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=97.66 E-value=0.00019 Score=49.58 Aligned_cols=60 Identities=22% Similarity=0.403 Sum_probs=48.2
Q ss_pred HHHHHHHHhCCCCcEEEEcCCC-cccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHHHH
Q psy11601 18 PKVKWLRENYPTLNIEVDGGVG-PNTIDECAKAGANWIVSGTAVINCPDRIQAISTLKSSVQ 78 (82)
Q Consensus 18 ~ki~~~~~~~~~~~i~~dGGI~-~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~~~ 78 (82)
..|+.+++.. ++|+.+|+||. +....+..+.|+|.+-+-|+|..+.||....+.|+...+
T Consensus 165 ~~l~~i~~~~-~vPvIvDAGiG~pSdaa~AMElG~daVLvNTAiA~A~dPv~MA~Af~~AV~ 225 (247)
T PF05690_consen 165 YNLRIIIERA-DVPVIVDAGIGTPSDAAQAMELGADAVLVNTAIAKAKDPVAMARAFKLAVE 225 (247)
T ss_dssp HHHHHHHHHG-SSSBEEES---SHHHHHHHHHTT-SEEEESHHHHTSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhc-CCcEEEeCCCCCHHHHHHHHHcCCceeehhhHHhccCCHHHHHHHHHHHHH
Confidence 3456666655 69999999995 788999999999999999999999999999999987765
No 114
>cd00516 PRTase_typeII Phosphoribosyltransferase (PRTase) type II; This family contains two enzymes that play an important role in NAD production by either allowing quinolinic acid (QA) , quinolinate phosphoribosyl transferase (QAPRTase), or nicotinic acid (NA), nicotinate phosphoribosyltransferase (NAPRTase), to be used in the synthesis of NAD. QAPRTase catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide, an important step in the de novo synthesis of NAD. NAPRTase catalyses a similar reaction leading to NAMN and pyrophosphate, using nicotinic acid an PPRP as substrates, used in the NAD salvage pathway.
Probab=97.65 E-value=0.00011 Score=50.88 Aligned_cols=36 Identities=28% Similarity=0.496 Sum_probs=33.8
Q ss_pred CCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCC
Q psy11601 28 PTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINC 63 (82)
Q Consensus 28 ~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~ 63 (82)
+++.+++.|||+++|++.+...|+|.|++|+.+++.
T Consensus 238 ~~~~i~~Sggi~~~~i~~~~~~gvd~~gvG~~~~~~ 273 (281)
T cd00516 238 PRVKIEASGGLDEENIRAYAETGVDVFGVGTLLHSA 273 (281)
T ss_pred CceEEEEeCCCCHHHHHHHHHcCCCEEEeCcccccC
Confidence 478899999999999999999999999999999875
No 115
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=97.61 E-value=0.00023 Score=49.93 Aligned_cols=61 Identities=25% Similarity=0.227 Sum_probs=51.0
Q ss_pred CCCCCCCCcchHHHHHHHHHhC-CCCcEEEEcCCC-cccHHHHHHcCCCEEEEeccccC-CCCH
Q psy11601 6 GFGGQKFMQDMMPKVKWLRENY-PTLNIEVDGGVG-PNTIDECAKAGANWIVSGTAVIN-CPDR 66 (82)
Q Consensus 6 G~~gq~~~~~~~~ki~~~~~~~-~~~~i~~dGGI~-~~ni~~~~~~Gad~vv~gs~i~~-~~d~ 66 (82)
|+.|....|-.++.++++++.. +++||.+.|||. .+.+.+++.+|||.+-++|+++. .++.
T Consensus 228 g~sG~a~~p~~l~~v~~~~~~~~~~ipIig~GGI~~~~da~~~l~aGA~~V~i~ta~~~~g~~~ 291 (299)
T cd02940 228 GYSGPAVKPIALRAVSQIARAPEPGLPISGIGGIESWEDAAEFLLLGASVVQVCTAVMNQGFTI 291 (299)
T ss_pred cccCCCcchHHHHHHHHHHHhcCCCCcEEEECCCCCHHHHHHHHHcCCChheEceeecccCCcH
Confidence 5777777788899999998875 379999999995 67888999999999999999776 4444
No 116
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=97.60 E-value=0.00018 Score=51.07 Aligned_cols=68 Identities=13% Similarity=0.305 Sum_probs=53.4
Q ss_pred CccCCCCCCCCCCcc--hHHHHHHHHHhCCCCcEEEEcCC-CcccHHHHH-HcCCCEEEEeccccCCCCHHHH
Q psy11601 1 MTVEPGFGGQKFMQD--MMPKVKWLRENYPTLNIEVDGGV-GPNTIDECA-KAGANWIVSGTAVINCPDRIQA 69 (82)
Q Consensus 1 m~v~pG~~gq~~~~~--~~~ki~~~~~~~~~~~i~~dGGI-~~~ni~~~~-~~Gad~vv~gs~i~~~~d~~~~ 69 (82)
++||++...|.+... .++.++++++.. ++||.+-|+| +.+.+.+++ ..|+|+|.+|++++..+.+-..
T Consensus 165 i~Vh~Rt~~~~y~g~~~~~~~i~~ik~~~-~iPVi~nGdI~t~~da~~~l~~~g~DgVmiGRg~l~nP~lf~~ 236 (312)
T PRK10550 165 LVVHGRTKEDGYRAEHINWQAIGEIRQRL-TIPVIANGEIWDWQSAQQCMAITGCDAVMIGRGALNIPNLSRV 236 (312)
T ss_pred EEECCCCCccCCCCCcccHHHHHHHHhhc-CCcEEEeCCcCCHHHHHHHHhccCCCEEEEcHHhHhCcHHHHH
Confidence 367888877777643 467788888875 6999999999 888999877 5899999999998876654443
No 117
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=97.59 E-value=0.00032 Score=50.27 Aligned_cols=67 Identities=19% Similarity=0.300 Sum_probs=53.7
Q ss_pred CCCCC-CcchHHHHHHHHHhCCCCcEEEEcCCC-cccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHHHH
Q psy11601 8 GGQKF-MQDMMPKVKWLRENYPTLNIEVDGGVG-PNTIDECAKAGANWIVSGTAVINCPDRIQAISTLKSSVQ 78 (82)
Q Consensus 8 ~gq~~-~~~~~~ki~~~~~~~~~~~i~~dGGI~-~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~~~ 78 (82)
.|+.. .|+.++. +.+. +++|+.+|+||+ ++.+....+.|+|++-+-|+|.+++||....+.|+...+
T Consensus 231 sg~gv~~p~~i~~---~~e~-~~vpVivdAGIg~~sda~~AmelGadgVL~nSaIa~a~dPv~Ma~A~~~av~ 299 (326)
T PRK11840 231 SGLGIQNPYTIRL---IVEG-ATVPVLVDAGVGTASDAAVAMELGCDGVLMNTAIAEAKNPVLMARAMKLAVE 299 (326)
T ss_pred CCCCCCCHHHHHH---HHHc-CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEcceeccCCCHHHHHHHHHHHHH
Confidence 34444 4555544 4444 469999999995 688999999999999999999999999999999987665
No 118
>PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P). This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B.
Probab=97.59 E-value=0.0001 Score=50.60 Aligned_cols=57 Identities=33% Similarity=0.464 Sum_probs=42.1
Q ss_pred HHHHHHHHhCCCCcEEEEcCCC-cccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHH
Q psy11601 18 PKVKWLRENYPTLNIEVDGGVG-PNTIDECAKAGANWIVSGTAVINCPDRIQAISTLK 74 (82)
Q Consensus 18 ~ki~~~~~~~~~~~i~~dGGI~-~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~ 74 (82)
+.+.++++...+.++.+=|||+ .+.+.+++++|||.||+|..+....+.++.++.+.
T Consensus 171 ~~v~~~~~~~~~~~LivGGGIrs~e~A~~~~~aGAD~IVvGn~iee~~~~e~~~~~i~ 228 (230)
T PF01884_consen 171 EEVIAAVKKLSDIPLIVGGGIRSPEQAREMAEAGADTIVVGNAIEEDPDLEEALETIK 228 (230)
T ss_dssp HHHHHHHHHSSSSEEEEESS--SHHHHHHHHCTTSSEEEESCHHHHHH-HHHHHTHHH
T ss_pred HHHHHHHHhcCCccEEEeCCcCCHHHHHHHHHCCCCEEEECCEEEEcchHHHHHHHHh
Confidence 5566666655689999999996 67888999999999999999997555455554443
No 119
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=97.58 E-value=0.00029 Score=49.48 Aligned_cols=71 Identities=23% Similarity=0.297 Sum_probs=53.0
Q ss_pred CCCCCCCCcchHHHHHHHHHhCC-CCcEEEEcCC-CcccHHHHHHcCCCEEEEeccccC-CCCHHHHHHHHHHHHHH
Q psy11601 6 GFGGQKFMQDMMPKVKWLRENYP-TLNIEVDGGV-GPNTIDECAKAGANWIVSGTAVIN-CPDRIQAISTLKSSVQK 79 (82)
Q Consensus 6 G~~gq~~~~~~~~ki~~~~~~~~-~~~i~~dGGI-~~~ni~~~~~~Gad~vv~gs~i~~-~~d~~~~~~~l~~~~~~ 79 (82)
|+.|....+..++.++++++..+ ++||.+.||| +.+.+.+++.+|||.+-++|+++. .++. ++++.+.|++
T Consensus 219 G~SG~~i~~~al~~v~~~~~~~~~~ipIig~GGI~s~~da~e~l~aGA~~Vqv~ta~~~~gp~~---~~~i~~~L~~ 292 (294)
T cd04741 219 GLAGAYLHPLALGNVRTFRRLLPSEIQIIGVGGVLDGRGAFRMRLAGASAVQVGTALGKEGPKV---FARIEKELED 292 (294)
T ss_pred CcCchhhHHHHHHHHHHHHHhcCCCCCEEEeCCCCCHHHHHHHHHcCCCceeEchhhhhcCchH---HHHHHHHHHh
Confidence 34455567778888999888764 5999999999 568888999999999999999874 4543 3334444443
No 120
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=97.58 E-value=0.00024 Score=48.23 Aligned_cols=43 Identities=21% Similarity=0.315 Sum_probs=36.4
Q ss_pred HHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccC
Q psy11601 20 VKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVIN 62 (82)
Q Consensus 20 i~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~ 62 (82)
++.+....++++++..|||+++|+++|+++|+..+-+||.++.
T Consensus 144 ~ka~~gP~~~v~~~pTGGVs~~N~~~yla~gv~avG~Gs~l~~ 186 (211)
T COG0800 144 LKALAGPFPQVRFCPTGGVSLDNAADYLAAGVVAVGLGSWLVP 186 (211)
T ss_pred HHHHcCCCCCCeEeecCCCCHHHHHHHHhCCceEEecCccccC
Confidence 3444455678999999999999999999999888888899985
No 121
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=97.58 E-value=0.00056 Score=48.00 Aligned_cols=47 Identities=19% Similarity=0.219 Sum_probs=41.9
Q ss_pred cchHHHHHHHHHhCCCCcEEEEc--CCCcccHHHHHHcCCCEEEEecccc
Q psy11601 14 QDMMPKVKWLRENYPTLNIEVDG--GVGPNTIDECAKAGANWIVSGTAVI 61 (82)
Q Consensus 14 ~~~~~ki~~~~~~~~~~~i~~dG--GI~~~ni~~~~~~Gad~vv~gs~i~ 61 (82)
.-.++.|+++++.. ++|+++.| ||+.+|+.++.++|++.+-+++.+.
T Consensus 186 ~l~~e~L~~i~~~~-~iPlv~hGgSGi~~e~i~~~i~~Gi~kiNv~T~l~ 234 (282)
T TIGR01859 186 GLDFERLKEIKELT-NIPLVLHGASGIPEEQIKKAIKLGIAKINIDTDCR 234 (282)
T ss_pred ccCHHHHHHHHHHh-CCCEEEECCCCCCHHHHHHHHHcCCCEEEECcHHH
Confidence 34588888888876 59999999 9999999999999999999999885
No 122
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.57 E-value=0.00023 Score=48.88 Aligned_cols=53 Identities=19% Similarity=0.317 Sum_probs=41.2
Q ss_pred hHHHHHHHHHhCCCCcEEEEcCCC-cccHHHHHHcCCCEEEEeccccCCCCHHHHH
Q psy11601 16 MMPKVKWLRENYPTLNIEVDGGVG-PNTIDECAKAGANWIVSGTAVINCPDRIQAI 70 (82)
Q Consensus 16 ~~~ki~~~~~~~~~~~i~~dGGI~-~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~ 70 (82)
.++-|+++.+.. .|+++.|||+ .+.++.+..+||+.+++||..+..++.-+.+
T Consensus 62 n~~~i~~i~~~~--~~v~vGGGIrs~e~~~~~l~~Ga~rvvigT~a~~~p~~l~~~ 115 (241)
T PRK14114 62 NLPVLEKLSEFA--EHIQIGGGIRSLDYAEKLRKLGYRRQIVSSKVLEDPSFLKFL 115 (241)
T ss_pred hHHHHHHHHhhc--CcEEEecCCCCHHHHHHHHHCCCCEEEECchhhCCHHHHHHH
Confidence 344455555543 5899999999 5999999999999999999999766544444
No 123
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=97.54 E-value=0.00034 Score=51.08 Aligned_cols=57 Identities=21% Similarity=0.177 Sum_probs=48.8
Q ss_pred CCCCCCCCcchHHHHHHHHHhC--CCCcEEEEcCCC-cccHHHHHHcCCCEEEEeccccC
Q psy11601 6 GFGGQKFMQDMMPKVKWLRENY--PTLNIEVDGGVG-PNTIDECAKAGANWIVSGTAVIN 62 (82)
Q Consensus 6 G~~gq~~~~~~~~ki~~~~~~~--~~~~i~~dGGI~-~~ni~~~~~~Gad~vv~gs~i~~ 62 (82)
|+.|....|-.++.|+++++.. +++||...|||. .+.+.+++.+|||.|-++|+++.
T Consensus 228 g~SG~a~~p~~l~~v~~~~~~~~~~~ipIig~GGI~s~~da~e~i~aGA~~Vqi~ta~~~ 287 (420)
T PRK08318 228 GYCGPAVKPIALNMVAEIARDPETRGLPISGIGGIETWRDAAEFILLGAGTVQVCTAAMQ 287 (420)
T ss_pred cccchhhhHHHHHHHHHHHhccccCCCCEEeecCcCCHHHHHHHHHhCCChheeeeeecc
Confidence 5667777788899999998864 379999999995 77888999999999999999775
No 124
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=97.54 E-value=0.00039 Score=49.44 Aligned_cols=56 Identities=13% Similarity=0.153 Sum_probs=47.8
Q ss_pred CCCCCCCCcchHHHHHHHHHhCCCCcEEEEcCC-CcccHHHHHHcCCCEEEEeccccC
Q psy11601 6 GFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGV-GPNTIDECAKAGANWIVSGTAVIN 62 (82)
Q Consensus 6 G~~gq~~~~~~~~ki~~~~~~~~~~~i~~dGGI-~~~ni~~~~~~Gad~vv~gs~i~~ 62 (82)
|+.|....|..++-++++++.. ++||.+.||| +.+.+.+++.+||+.+-++++++.
T Consensus 217 glsg~~~~~~al~~v~~~~~~~-~ipIig~GGI~s~~Da~e~l~aGA~~V~v~t~~~~ 273 (334)
T PRK07565 217 VLSTPAELRLPLRWIAILSGRV-GADLAATTGVHDAEDVIKMLLAGADVVMIASALLR 273 (334)
T ss_pred CCCCchhhhHHHHHHHHHHhhc-CCCEEEECCCCCHHHHHHHHHcCCCceeeehHHhh
Confidence 5667777778888888888765 6999999999 478888999999999999999886
No 125
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=97.53 E-value=0.0005 Score=48.93 Aligned_cols=57 Identities=14% Similarity=0.194 Sum_probs=48.2
Q ss_pred CCCCCCCCCcchHHHHHHHHHhCCCCcEEEEcCCC-cccHHHHHHcCCCEEEEeccccC
Q psy11601 5 PGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVG-PNTIDECAKAGANWIVSGTAVIN 62 (82)
Q Consensus 5 pG~~gq~~~~~~~~ki~~~~~~~~~~~i~~dGGI~-~~ni~~~~~~Gad~vv~gs~i~~ 62 (82)
.|+.|....|..++-++++++.. ++||.+.|||. .+.+.+++.+||+.+-++|+++.
T Consensus 214 ~glSG~~~~~~al~~v~~v~~~~-~ipIig~GGI~s~~Da~e~l~aGA~~Vqv~ta~~~ 271 (325)
T cd04739 214 LLLSSPAEIRLPLRWIAILSGRV-KASLAASGGVHDAEDVVKYLLAGADVVMTTSALLR 271 (325)
T ss_pred CCcCCccchhHHHHHHHHHHccc-CCCEEEECCCCCHHHHHHHHHcCCCeeEEehhhhh
Confidence 45667777788888888888765 69999999995 67888999999999999999876
No 126
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=97.53 E-value=0.0005 Score=48.23 Aligned_cols=68 Identities=10% Similarity=0.215 Sum_probs=49.7
Q ss_pred CCcchHHHHHHHHHhCC-CCcEEEEcCC-CcccHHHHHHcCCCEEEEeccccCC------CCHHHHHHHHHHHHHH
Q psy11601 12 FMQDMMPKVKWLRENYP-TLNIEVDGGV-GPNTIDECAKAGANWIVSGTAVINC------PDRIQAISTLKSSVQK 79 (82)
Q Consensus 12 ~~~~~~~ki~~~~~~~~-~~~i~~dGGI-~~~ni~~~~~~Gad~vv~gs~i~~~------~d~~~~~~~l~~~~~~ 79 (82)
+.+..++-+.++++..+ ++||.++||| +...+...+..|||.+.+|+.++.. +...+.++.+++.++.
T Consensus 209 ~g~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~kal~lGAd~V~ig~~~l~~~~~~g~~~v~~~i~~l~~el~~ 284 (299)
T cd02809 209 GAPATIDALPEIVAAVGGRIEVLLDGGIRRGTDVLKALALGADAVLIGRPFLYGLAAGGEAGVAHVLEILRDELER 284 (299)
T ss_pred CCcCHHHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHcCCCEEEEcHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 45677888888877543 6999999999 6788888889999999999885521 2334455555555543
No 127
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=97.51 E-value=0.00031 Score=47.08 Aligned_cols=49 Identities=20% Similarity=0.432 Sum_probs=41.5
Q ss_pred chHHHHHHHHHhCCCCcEEEEcCCCc-ccHHHHHHcCCCEEEEeccccCCC
Q psy11601 15 DMMPKVKWLRENYPTLNIEVDGGVGP-NTIDECAKAGANWIVSGTAVINCP 64 (82)
Q Consensus 15 ~~~~ki~~~~~~~~~~~i~~dGGI~~-~ni~~~~~~Gad~vv~gs~i~~~~ 64 (82)
..++.++++++.. ++|+.+.|||+- +.+..+..+||+.+++|++++..+
T Consensus 61 ~~~~~i~~i~~~~-~~pv~~~GGI~~~ed~~~~~~~Ga~~vilg~~~l~~~ 110 (233)
T PRK00748 61 VNLELIEAIVKAV-DIPVQVGGGIRSLETVEALLDAGVSRVIIGTAAVKNP 110 (233)
T ss_pred ccHHHHHHHHHHC-CCCEEEcCCcCCHHHHHHHHHcCCCEEEECchHHhCH
Confidence 4577777777764 589999999986 799999999999999999999754
No 128
>COG0214 SNZ1 Pyridoxine biosynthesis enzyme [Coenzyme metabolism]
Probab=97.49 E-value=0.00028 Score=49.01 Aligned_cols=59 Identities=17% Similarity=0.193 Sum_probs=45.2
Q ss_pred HHHHHHHHhCCCCc--EEEEcCC-CcccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHHH
Q psy11601 18 PKVKWLRENYPTLN--IEVDGGV-GPNTIDECAKAGANWIVSGTAVINCPDRIQAISTLKSSV 77 (82)
Q Consensus 18 ~ki~~~~~~~~~~~--i~~dGGI-~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~~ 77 (82)
+-+++.+++. .+| -.+.||| ++.......+.|+|++-+||.||+++||.+..+.+-+..
T Consensus 196 elv~~~~~~g-rLPVvnFAAGGvATPADAALMM~LGadGVFVGSGIFKS~~P~~~A~AIV~A~ 257 (296)
T COG0214 196 ELVKEVAKLG-RLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSSNPEKRAKAIVEAT 257 (296)
T ss_pred HHHHHHHHhC-CCCeEeecccCcCChhHHHHHHHhCCCeEEecccccCCCCHHHHHHHHHHHH
Confidence 4444544442 334 3466776 889999999999999999999999999998888876643
No 129
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=97.49 E-value=0.00039 Score=46.60 Aligned_cols=49 Identities=18% Similarity=0.426 Sum_probs=39.5
Q ss_pred hHHHHHHHHHhCCCCcEEEEcCCCc-ccHHHHHHcCCCEEEEeccccCCCC
Q psy11601 16 MMPKVKWLRENYPTLNIEVDGGVGP-NTIDECAKAGANWIVSGTAVINCPD 65 (82)
Q Consensus 16 ~~~ki~~~~~~~~~~~i~~dGGI~~-~ni~~~~~~Gad~vv~gs~i~~~~d 65 (82)
.++.++++++.. ++|+.+.|||+- +.++++.++|||.+++|+..+..++
T Consensus 61 ~~~~i~~i~~~~-~~pv~~~GgI~~~e~~~~~~~~Gad~vvigs~~l~dp~ 110 (234)
T cd04732 61 NLELIEEIVKAV-GIPVQVGGGIRSLEDIERLLDLGVSRVIIGTAAVKNPE 110 (234)
T ss_pred CHHHHHHHHHhc-CCCEEEeCCcCCHHHHHHHHHcCCCEEEECchHHhChH
Confidence 355566666665 589999999876 8899999999999999999886443
No 130
>PRK08227 autoinducer 2 aldolase; Validated
Probab=97.48 E-value=0.00056 Score=47.77 Aligned_cols=61 Identities=13% Similarity=0.226 Sum_probs=48.6
Q ss_pred HHHHHHHHhCCCCcEEEEcCCCcc------cHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHHHHH
Q psy11601 18 PKVKWLRENYPTLNIEVDGGVGPN------TIDECAKAGANWIVSGTAVINCPDRIQAISTLKSSVQK 79 (82)
Q Consensus 18 ~ki~~~~~~~~~~~i~~dGGI~~~------ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~~~~ 79 (82)
+.++++.+.. ++|+++.||=+.. .+....++|+.++++|+-||+.+||.+.++.|+.++.+
T Consensus 182 ~~f~~vv~a~-~vPVviaGG~k~~~~~~L~~v~~ai~aGa~Gv~~GRNIfQ~~~p~~~~~al~~IVh~ 248 (264)
T PRK08227 182 EGFERITAGC-PVPIVIAGGKKLPERDALEMCYQAIDEGASGVDMGRNIFQSEHPVAMIKAVHAVVHE 248 (264)
T ss_pred HHHHHHHHcC-CCcEEEeCCCCCCHHHHHHHHHHHHHcCCceeeechhhhccCCHHHHHHHHHHHHhC
Confidence 4455555544 5899999998852 24456789999999999999999999999999987654
No 131
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=97.48 E-value=0.00038 Score=47.18 Aligned_cols=52 Identities=21% Similarity=0.374 Sum_probs=43.2
Q ss_pred cchHHHHHHHHHhCCCCcEEEEcCCC-cccHHHHHHcCCCEEEEeccccCCCCH
Q psy11601 14 QDMMPKVKWLRENYPTLNIEVDGGVG-PNTIDECAKAGANWIVSGTAVINCPDR 66 (82)
Q Consensus 14 ~~~~~ki~~~~~~~~~~~i~~dGGI~-~~ni~~~~~~Gad~vv~gs~i~~~~d~ 66 (82)
+..++-++++++.. ++|+.+.|||+ .+.+..+...|++.+++|+.++..++.
T Consensus 57 ~~~~~~i~~i~~~~-~~pv~~~GGI~s~~d~~~~l~~G~~~v~ig~~~~~~p~~ 109 (243)
T cd04731 57 ETMLDVVERVAEEV-FIPLTVGGGIRSLEDARRLLRAGADKVSINSAAVENPEL 109 (243)
T ss_pred cccHHHHHHHHHhC-CCCEEEeCCCCCHHHHHHHHHcCCceEEECchhhhChHH
Confidence 44567778877765 58999999998 589999999999999999999975544
No 132
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=97.47 E-value=0.00036 Score=47.62 Aligned_cols=51 Identities=16% Similarity=0.335 Sum_probs=42.3
Q ss_pred chHHHHHHHHHhCCCCcEEEEcCCC-cccHHHHHHcCCCEEEEeccccCCCCH
Q psy11601 15 DMMPKVKWLRENYPTLNIEVDGGVG-PNTIDECAKAGANWIVSGTAVINCPDR 66 (82)
Q Consensus 15 ~~~~ki~~~~~~~~~~~i~~dGGI~-~~ni~~~~~~Gad~vv~gs~i~~~~d~ 66 (82)
..++-|+++.+.. .+|+++.|||+ .+.++.+..+||+.+++||+++..++.
T Consensus 62 ~n~~~i~~i~~~~-~~pv~vgGGirs~edv~~~l~~Ga~kvviGs~~l~~p~l 113 (241)
T PRK14024 62 SNRELLAEVVGKL-DVKVELSGGIRDDESLEAALATGCARVNIGTAALENPEW 113 (241)
T ss_pred ccHHHHHHHHHHc-CCCEEEcCCCCCHHHHHHHHHCCCCEEEECchHhCCHHH
Confidence 3456777777765 58999999996 688999999999999999999976554
No 133
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=97.46 E-value=0.00033 Score=48.91 Aligned_cols=46 Identities=24% Similarity=0.381 Sum_probs=39.9
Q ss_pred hHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCC
Q psy11601 16 MMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINC 63 (82)
Q Consensus 16 ~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~ 63 (82)
..+-|+++++ . +.||.+=|||+.++++.++.+||+.+++||..+..
T Consensus 72 n~~~i~~i~~-~-~~~vqvGGGIR~e~i~~~l~~Ga~rViigT~Av~~ 117 (262)
T PLN02446 72 LAAALEALRA-Y-PGGLQVGGGVNSENAMSYLDAGASHVIVTSYVFRD 117 (262)
T ss_pred cHHHHHHHHh-C-CCCEEEeCCccHHHHHHHHHcCCCEEEEchHHHhC
Confidence 3556677777 4 48999999999999999999999999999999874
No 134
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=97.44 E-value=0.0007 Score=45.35 Aligned_cols=49 Identities=18% Similarity=0.241 Sum_probs=41.2
Q ss_pred chHHHHHHHHHhCCCCcEEEEcCCCc-ccHHHHHHcCCCEEEEeccccCCC
Q psy11601 15 DMMPKVKWLRENYPTLNIEVDGGVGP-NTIDECAKAGANWIVSGTAVINCP 64 (82)
Q Consensus 15 ~~~~ki~~~~~~~~~~~i~~dGGI~~-~ni~~~~~~Gad~vv~gs~i~~~~ 64 (82)
..++.++++++.. ++|+.+.|||+. +.+..+.+.|++++++||+++..+
T Consensus 177 ~~~~~i~~i~~~~-~ipvi~~GGi~~~~di~~~~~~Ga~gv~vg~~~~~~~ 226 (234)
T cd04732 177 PNFELYKELAAAT-GIPVIASGGVSSLDDIKALKELGVAGVIVGKALYEGK 226 (234)
T ss_pred CCHHHHHHHHHhc-CCCEEEecCCCCHHHHHHHHHCCCCEEEEeHHHHcCC
Confidence 4467788888765 689999999995 569999999999999999988654
No 135
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.43 E-value=0.00038 Score=47.49 Aligned_cols=51 Identities=33% Similarity=0.398 Sum_probs=40.8
Q ss_pred chHHHHHHHHHhCCCCcEEEEcCCC-cccHHHHHHcCCCEEEEeccccCCCCH
Q psy11601 15 DMMPKVKWLRENYPTLNIEVDGGVG-PNTIDECAKAGANWIVSGTAVINCPDR 66 (82)
Q Consensus 15 ~~~~ki~~~~~~~~~~~i~~dGGI~-~~ni~~~~~~Gad~vv~gs~i~~~~d~ 66 (82)
..++-|+++.+.. .+|+++.|||+ .+.++.+..+||+.+++||..+..++.
T Consensus 63 ~n~~~I~~i~~~~-~~pi~vGGGIrs~e~v~~~l~~Ga~kvvigt~a~~~~~~ 114 (234)
T PRK13587 63 REFDYIKSLRRLT-TKDIEVGGGIRTKSQIMDYFAAGINYCIVGTKGIQDTDW 114 (234)
T ss_pred chHHHHHHHHhhc-CCeEEEcCCcCCHHHHHHHHHCCCCEEEECchHhcCHHH
Confidence 3456677766653 58999999995 678899999999999999998875543
No 136
>PRK08662 nicotinate phosphoribosyltransferase; Reviewed
Probab=97.39 E-value=0.00033 Score=50.45 Aligned_cols=35 Identities=26% Similarity=0.340 Sum_probs=32.3
Q ss_pred CCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCC
Q psy11601 28 PTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINC 63 (82)
Q Consensus 28 ~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~ 63 (82)
+++.|++.||||++|+.++.+. +|.+.+|+.++.+
T Consensus 260 ~~v~IeaSGgI~~~ni~~ya~~-vD~isvGs~~~~a 294 (343)
T PRK08662 260 EHVKIFVSGGLDPERIRELRDV-VDGFGVGTYISFA 294 (343)
T ss_pred CCeEEEEeCCCCHHHHHHHHHh-CCEEEcCccccCC
Confidence 5688999999999999999999 9999999998863
No 137
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=97.39 E-value=0.0009 Score=45.34 Aligned_cols=52 Identities=13% Similarity=0.220 Sum_probs=41.2
Q ss_pred hHHHHHHHHHhCCCCcEEEEcCCC-cccHHHHHHc-CCCEEEEeccccCCC-CHHH
Q psy11601 16 MMPKVKWLRENYPTLNIEVDGGVG-PNTIDECAKA-GANWIVSGTAVINCP-DRIQ 68 (82)
Q Consensus 16 ~~~ki~~~~~~~~~~~i~~dGGI~-~~ni~~~~~~-Gad~vv~gs~i~~~~-d~~~ 68 (82)
.++-++++++.. ++|+.+.|||+ ++.+.++.+. |+|++++|++++... +..+
T Consensus 181 ~~~~i~~i~~~~-~~pvia~GGi~~~~di~~~l~~~g~dgv~vg~al~~~~~~~~~ 235 (243)
T cd04731 181 DLELIRAVSSAV-NIPVIASGGAGKPEHFVEAFEEGGADAALAASIFHFGEYTIAE 235 (243)
T ss_pred CHHHHHHHHhhC-CCCEEEeCCCCCHHHHHHHHHhCCCCEEEEeHHHHcCCCCHHH
Confidence 456677776664 68999999995 8999999887 999999999988643 4443
No 138
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=97.38 E-value=0.00075 Score=47.66 Aligned_cols=56 Identities=11% Similarity=0.254 Sum_probs=44.7
Q ss_pred cchHHHHHHHHHhCCCCcEEEEcCC-CcccHHHHH-HcCCCEEEEeccccCCCCHHHHH
Q psy11601 14 QDMMPKVKWLRENYPTLNIEVDGGV-GPNTIDECA-KAGANWIVSGTAVINCPDRIQAI 70 (82)
Q Consensus 14 ~~~~~ki~~~~~~~~~~~i~~dGGI-~~~ni~~~~-~~Gad~vv~gs~i~~~~d~~~~~ 70 (82)
+..++.++++++.. ++||.+.||| +.+.+.++. ..|||++.+|++++..+.+...+
T Consensus 178 ~~~~~~i~~i~~~~-~ipvi~nGgI~~~~da~~~l~~~gad~VmigR~~l~~P~l~~~~ 235 (319)
T TIGR00737 178 EANWDIIARVKQAV-RIPVIGNGDIFSPEDAKAMLETTGCDGVMIGRGALGNPWLFRQI 235 (319)
T ss_pred chhHHHHHHHHHcC-CCcEEEeCCCCCHHHHHHHHHhhCCCEEEEChhhhhCChHHHHH
Confidence 34577788888876 5999999999 478888888 68999999999988766654443
No 139
>PRK02506 dihydroorotate dehydrogenase 1A; Reviewed
Probab=97.37 E-value=0.00027 Score=50.03 Aligned_cols=71 Identities=24% Similarity=0.328 Sum_probs=53.6
Q ss_pred CCCCCCCcchHHHHHHHHHhC-CCCcEEEEcCC-CcccHHHHHHcCCCEEEEeccccC-CCCH-HHHHHHHHHHH
Q psy11601 7 FGGQKFMQDMMPKVKWLRENY-PTLNIEVDGGV-GPNTIDECAKAGANWIVSGTAVIN-CPDR-IQAISTLKSSV 77 (82)
Q Consensus 7 ~~gq~~~~~~~~ki~~~~~~~-~~~~i~~dGGI-~~~ni~~~~~~Gad~vv~gs~i~~-~~d~-~~~~~~l~~~~ 77 (82)
..|....|-.++.+.++++.. +++||.+.||| +.+.+.+++.+||+.+-++|+++. .++. .+-.++|.+.+
T Consensus 218 lSG~~i~p~al~~v~~~~~~~~~~ipIig~GGI~s~~da~e~i~aGA~~Vqv~ta~~~~gp~~~~~i~~~L~~~l 292 (310)
T PRK02506 218 IGGDYIKPTALANVRAFYQRLNPSIQIIGTGGVKTGRDAFEHILCGASMVQVGTALHKEGPAVFERLTKELKAIM 292 (310)
T ss_pred CCchhccHHHHHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHcCCCHHhhhHHHHHhChHHHHHHHHHHHHHH
Confidence 467778888999999988764 47999999999 467888999999999999999775 3332 23334444433
No 140
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=97.36 E-value=0.00036 Score=47.36 Aligned_cols=51 Identities=24% Similarity=0.395 Sum_probs=39.7
Q ss_pred chHHHHHHHHHhCCCCcEEEEcCCCccc-HHHHHHcCCCEEEEeccccCCCCH
Q psy11601 15 DMMPKVKWLRENYPTLNIEVDGGVGPNT-IDECAKAGANWIVSGTAVINCPDR 66 (82)
Q Consensus 15 ~~~~ki~~~~~~~~~~~i~~dGGI~~~n-i~~~~~~Gad~vv~gs~i~~~~d~ 66 (82)
..++-|+++.+.. ..|+.++|||+-.. +..+...||+.+++||..+..++.
T Consensus 60 ~n~~~i~~i~~~~-~~~i~vgGGIrs~ed~~~ll~~Ga~~Vvigt~~~~~~~~ 111 (229)
T PF00977_consen 60 SNLELIKEIAKET-GIPIQVGGGIRSIEDAERLLDAGADRVVIGTEALEDPEL 111 (229)
T ss_dssp HHHHHHHHHHHHS-SSEEEEESSE-SHHHHHHHHHTT-SEEEESHHHHHCCHH
T ss_pred hHHHHHHHHHhcC-CccEEEeCccCcHHHHHHHHHhCCCEEEeChHHhhchhH
Confidence 4556677777775 48999999997654 899999999999999998876554
No 141
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.34 E-value=0.00075 Score=46.12 Aligned_cols=48 Identities=19% Similarity=0.069 Sum_probs=38.6
Q ss_pred HHHHHHHHHhCCCCcEEEEcCCCc-ccHHHHHHcCCCEEEEeccccCCCC
Q psy11601 17 MPKVKWLRENYPTLNIEVDGGVGP-NTIDECAKAGANWIVSGTAVINCPD 65 (82)
Q Consensus 17 ~~ki~~~~~~~~~~~i~~dGGI~~-~ni~~~~~~Gad~vv~gs~i~~~~d 65 (82)
.+-|+++.+... .|+++.|||+- ++++.+.+.||+.+++||..+..++
T Consensus 62 ~~~i~~i~~~~~-~~v~vGGGIrs~e~~~~~l~~Ga~kvvigt~a~~~p~ 110 (232)
T PRK13586 62 EMYIKEISKIGF-DWIQVGGGIRDIEKAKRLLSLDVNALVFSTIVFTNFN 110 (232)
T ss_pred HHHHHHHHhhCC-CCEEEeCCcCCHHHHHHHHHCCCCEEEECchhhCCHH
Confidence 455666666322 48999999987 8999999999999999999887553
No 142
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=97.34 E-value=0.00064 Score=45.60 Aligned_cols=47 Identities=19% Similarity=0.431 Sum_probs=39.1
Q ss_pred hHHHHHHHHHhCCCCcEEEEcCCC-cccHHHHHHcCCCEEEEeccccCC
Q psy11601 16 MMPKVKWLRENYPTLNIEVDGGVG-PNTIDECAKAGANWIVSGTAVINC 63 (82)
Q Consensus 16 ~~~ki~~~~~~~~~~~i~~dGGI~-~~ni~~~~~~Gad~vv~gs~i~~~ 63 (82)
.++.++++++.. ..|+.+.|||+ .+.+..+..+||+.+++|+.++..
T Consensus 60 ~~~~i~~i~~~~-~~pi~~ggGI~~~ed~~~~~~~Ga~~vvlgs~~l~d 107 (230)
T TIGR00007 60 NLPVIKKIVRET-GVPVQVGGGIRSLEDVEKLLDLGVDRVIIGTAAVEN 107 (230)
T ss_pred cHHHHHHHHHhc-CCCEEEeCCcCCHHHHHHHHHcCCCEEEEChHHhhC
Confidence 355667766664 58999999987 599999999999999999998864
No 143
>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase. This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.
Probab=97.33 E-value=0.00076 Score=46.35 Aligned_cols=53 Identities=17% Similarity=0.171 Sum_probs=40.9
Q ss_pred hHHHHHHHHHhCCCCcEEEEcCCC-cccHHHHHHcCCCEEEEeccccCCCCHHHH
Q psy11601 16 MMPKVKWLRENYPTLNIEVDGGVG-PNTIDECAKAGANWIVSGTAVINCPDRIQA 69 (82)
Q Consensus 16 ~~~ki~~~~~~~~~~~i~~dGGI~-~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~ 69 (82)
..+-|+++.+.. ..|+++.|||+ .+.+..+...||+.+++||..+..++..+.
T Consensus 62 n~~~i~~i~~~~-~~~v~vgGGIrs~e~~~~~l~~Ga~~vvigT~a~~~p~~~~~ 115 (243)
T TIGR01919 62 NEMMLEEVVKLL-VVVEELSGGRRDDSSLRAALTGGRARVNGGTAALENPWWAAA 115 (243)
T ss_pred hHHHHHHHHHHC-CCCEEEcCCCCCHHHHHHHHHcCCCEEEECchhhCCHHHHHH
Confidence 455667766665 48999999996 566778999999999999998876554433
No 144
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=97.32 E-value=0.00018 Score=51.55 Aligned_cols=72 Identities=19% Similarity=0.286 Sum_probs=50.9
Q ss_pred CCCCCCCcchHHHHHHHHHhCC-CCcEEEEcCCC-cccHHHHHHcCCCEEEEeccccC-CCCHHHHH-HHHHHHHH
Q psy11601 7 FGGQKFMQDMMPKVKWLRENYP-TLNIEVDGGVG-PNTIDECAKAGANWIVSGTAVIN-CPDRIQAI-STLKSSVQ 78 (82)
Q Consensus 7 ~~gq~~~~~~~~ki~~~~~~~~-~~~i~~dGGI~-~~ni~~~~~~Gad~vv~gs~i~~-~~d~~~~~-~~l~~~~~ 78 (82)
+.|....+..++-++++++..+ ++||.+.|||. .+.+.+++.+|||.|-++|+++. .+++...+ +.|.+.++
T Consensus 266 ~SG~~~~~~~l~~v~~l~~~~~~~ipIig~GGI~s~eda~e~l~aGAd~V~v~~~~~~~gP~~~~~i~~~L~~~l~ 341 (344)
T PRK05286 266 LSGRPLFERSTEVIRRLYKELGGRLPIIGVGGIDSAEDAYEKIRAGASLVQIYSGLIYEGPGLVKEIVRGLARLLR 341 (344)
T ss_pred cccHHHHHHHHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcCCCHHHHHHHHHHhCchHHHHHHHHHHHHHH
Confidence 3444444557778888887643 69999999995 67888999999999999999864 35554333 33444443
No 145
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=97.32 E-value=0.0021 Score=43.82 Aligned_cols=69 Identities=19% Similarity=0.327 Sum_probs=53.5
Q ss_pred CCCC--CCCCcchHHHHHHHHHhCCCCcEEEEcCCC-cccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHHHHH
Q psy11601 6 GFGG--QKFMQDMMPKVKWLRENYPTLNIEVDGGVG-PNTIDECAKAGANWIVSGTAVINCPDRIQAISTLKSSVQK 79 (82)
Q Consensus 6 G~~g--q~~~~~~~~ki~~~~~~~~~~~i~~dGGI~-~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~~~~ 79 (82)
||.+ ..-.+..++-++++++ ..+++.+-|.++ ++..+.....||+.+++||+|.. |++-.++|.+.+++
T Consensus 157 GYT~~~~~~~~pDf~lvk~l~~--~~~~vIAEGr~~tP~~Ak~a~~~Ga~aVvVGsAITR---p~~It~~F~~~ik~ 228 (229)
T COG3010 157 GYTGYTEKPTEPDFQLVKQLSD--AGCRVIAEGRYNTPEQAKKAIEIGADAVVVGSAITR---PEEITQWFVDAIKS 228 (229)
T ss_pred cccCCCCCCCCCcHHHHHHHHh--CCCeEEeeCCCCCHHHHHHHHHhCCeEEEECcccCC---HHHHHHHHHHHHhc
Confidence 5555 2223446778888888 368999999985 89999999999999999999995 56666777776654
No 146
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=97.31 E-value=0.0011 Score=45.00 Aligned_cols=48 Identities=27% Similarity=0.447 Sum_probs=40.2
Q ss_pred chHHHHHHHHHhCCCCcEEEEcCCCc-ccHHHHHHcCCCEEEEeccccCC
Q psy11601 15 DMMPKVKWLRENYPTLNIEVDGGVGP-NTIDECAKAGANWIVSGTAVINC 63 (82)
Q Consensus 15 ~~~~ki~~~~~~~~~~~i~~dGGI~~-~ni~~~~~~Gad~vv~gs~i~~~ 63 (82)
..++-|+++.+.. .+|+++.|||+. +++..++.+||+.+++||..+..
T Consensus 65 ~n~~~i~~i~~~~-~~~v~vgGGir~~edv~~~l~~Ga~~viigt~~~~~ 113 (233)
T cd04723 65 DNDEAIRELAAAW-PLGLWVDGGIRSLENAQEWLKRGASRVIVGTETLPS 113 (233)
T ss_pred ccHHHHHHHHHhC-CCCEEEecCcCCHHHHHHHHHcCCCeEEEcceeccc
Confidence 3456667766654 489999999998 99999999999999999998865
No 147
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=97.31 E-value=0.00087 Score=45.81 Aligned_cols=53 Identities=23% Similarity=0.354 Sum_probs=39.5
Q ss_pred CCCCCCcchHHHHHHHHHhCCCCcEEEEcCCC-cccHHHHHHcCCCEEEEeccccCC
Q psy11601 8 GGQKFMQDMMPKVKWLRENYPTLNIEVDGGVG-PNTIDECAKAGANWIVSGTAVINC 63 (82)
Q Consensus 8 ~gq~~~~~~~~ki~~~~~~~~~~~i~~dGGI~-~~ni~~~~~~Gad~vv~gs~i~~~ 63 (82)
.|.+-+++.++++ ++...+.|+.+-|||+ .+.++++.++|||.+|+||.++..
T Consensus 161 ~g~~v~~e~i~~v---~~~~~~~pl~vGGGIrs~e~a~~l~~aGAD~VVVGs~~~~d 214 (223)
T TIGR01768 161 APEPVPPELVAEV---KKVLDKARLFVGGGIRSVEKAREMAEAGADTIVTGNVIEED 214 (223)
T ss_pred CCCCcCHHHHHHH---HHHcCCCCEEEecCCCCHHHHHHHHHcCCCEEEECcHHhhC
Confidence 3445455555444 4443358999999996 578889999999999999999964
No 148
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.28 E-value=0.00081 Score=45.77 Aligned_cols=45 Identities=22% Similarity=0.375 Sum_probs=37.3
Q ss_pred hHHHHHHHHHhCCCCcEEEEcCCC-cccHHHHHHcCCCEEEEecccc
Q psy11601 16 MMPKVKWLRENYPTLNIEVDGGVG-PNTIDECAKAGANWIVSGTAVI 61 (82)
Q Consensus 16 ~~~ki~~~~~~~~~~~i~~dGGI~-~~ni~~~~~~Gad~vv~gs~i~ 61 (82)
.++-++++.+.. .+|+.+.|||+ .+.+..+...|++.+++|++.+
T Consensus 61 n~~~i~~i~~~~-~~pv~~gGGIrs~edv~~l~~~G~~~vivGtaa~ 106 (228)
T PRK04128 61 NLDVVKNIIRET-GLKVQVGGGLRTYESIKDAYEIGVENVIIGTKAF 106 (228)
T ss_pred hHHHHHHHHhhC-CCCEEEcCCCCCHHHHHHHHHCCCCEEEECchhc
Confidence 455666666653 68999999997 5788999999999999999988
No 149
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=97.27 E-value=0.0013 Score=45.88 Aligned_cols=72 Identities=22% Similarity=0.377 Sum_probs=51.3
Q ss_pred CCCCCCC--CCcchHHHHHHHHHhCCCCcEEEEcCCCc-ccHHHHHHcCCCEEEEeccccC-----CCCHHHHHHHHHHH
Q psy11601 5 PGFGGQK--FMQDMMPKVKWLRENYPTLNIEVDGGVGP-NTIDECAKAGANWIVSGTAVIN-----CPDRIQAISTLKSS 76 (82)
Q Consensus 5 pG~~gq~--~~~~~~~ki~~~~~~~~~~~i~~dGGI~~-~ni~~~~~~Gad~vv~gs~i~~-----~~d~~~~~~~l~~~ 76 (82)
.|..|.+ +..+..+.++++|+.. +.|+++==||+. +.++.+. .|||++|+||++.+ .++..+.++++.+.
T Consensus 173 ~GvTG~~~~~~~~l~~~i~~ik~~~-~~Pv~vGFGI~~~e~~~~~~-~~aDGvIVGSa~v~~i~~~~~~~~~~~~~~~~~ 250 (259)
T PF00290_consen 173 MGVTGSRTELPDELKEFIKRIKKHT-DLPVAVGFGISTPEQAKKLA-AGADGVIVGSAFVKIIEENGDDAEKFLKELKEF 250 (259)
T ss_dssp SSSSSTTSSCHHHHHHHHHHHHHTT-SS-EEEESSS-SHHHHHHHH-TTSSEEEESHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCCCCcccchHHHHHHHHHHHhhc-CcceEEecCCCCHHHHHHHH-ccCCEEEECHHHHHHHHHccccHHHHHHHHHHH
Confidence 5656654 3455666788898886 789988888876 6788887 99999999999875 34566666666655
Q ss_pred HH
Q psy11601 77 VQ 78 (82)
Q Consensus 77 ~~ 78 (82)
.+
T Consensus 251 ~~ 252 (259)
T PF00290_consen 251 VR 252 (259)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 150
>cd04725 OMP_decarboxylase_like Orotidine 5'-phosphate decarboxylase (ODCase) is a dimeric enzyme that decarboxylates orotidine 5'-monophosphate (OMP) to form uridine 5'-phosphate (UMP), an essential step in the pyrimidine biosynthetic pathway. In mammals, UMP synthase contains two domains: the orotate phosphoribosyltransferase (OPRTase) domain that catalyzes the transfer of phosphoribosyl 5'-pyrophosphate (PRPP) to orotate to form OMP, and the orotidine-5'-phosphate decarboxylase (ODCase) domain that decarboxylates OMP to form UMP.
Probab=97.27 E-value=0.00086 Score=45.12 Aligned_cols=44 Identities=27% Similarity=0.598 Sum_probs=39.1
Q ss_pred CCCcEEEEcCCCcc----------cHHHHHHcCCCEEEEeccccCCCCHHHHHHH
Q psy11601 28 PTLNIEVDGGVGPN----------TIDECAKAGANWIVSGTAVINCPDRIQAIST 72 (82)
Q Consensus 28 ~~~~i~~dGGI~~~----------ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~ 72 (82)
+++ +.+..||+++ +..++...|++.+++|+.|+.++||.+.+++
T Consensus 162 ~~~-~~ltPGI~~~~~~~dq~r~~~~~~a~~~g~~~ivvGR~I~~a~~p~~~~~~ 215 (216)
T cd04725 162 PDF-LILTPGIGAQGSGDDQKRGGTPEDAIRAGADYIVVGRPITQAADPVAAAEA 215 (216)
T ss_pred CCC-eEEcCCcCCCCCccccccccCHHHHHHcCCcEEEEChhhccCCCHHHHHhc
Confidence 344 4888999999 9999999999999999999999999988765
No 151
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=97.25 E-value=0.00093 Score=46.74 Aligned_cols=61 Identities=15% Similarity=0.279 Sum_probs=49.3
Q ss_pred HHHHHHHHhCCCCcEEEEcCCCccc-------HHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHHHHH
Q psy11601 18 PKVKWLRENYPTLNIEVDGGVGPNT-------IDECAKAGANWIVSGTAVINCPDRIQAISTLKSSVQK 79 (82)
Q Consensus 18 ~ki~~~~~~~~~~~i~~dGGI~~~n-------i~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~~~~ 79 (82)
+..+++.+..+ +|+++.||=+.++ ...+.++||.++++|+-||+.++|...++.+..++.+
T Consensus 192 e~F~~vv~~~~-vpVviaGG~k~~~~~~~l~~~~~ai~aGa~G~~~GRNifQ~~~p~~m~~Ai~~Ivhe 259 (265)
T COG1830 192 ESFRRVVAACG-VPVVIAGGPKTETEREFLEMVTAAIEAGAMGVAVGRNIFQHEDPEAMVKAIQAIVHE 259 (265)
T ss_pred HHHHHHHHhCC-CCEEEeCCCCCCChHHHHHHHHHHHHccCcchhhhhhhhccCChHHHHHHHHHHhcC
Confidence 55666666665 9999999988844 4456789999999999999999999988888776654
No 152
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=97.25 E-value=0.0016 Score=46.58 Aligned_cols=57 Identities=21% Similarity=0.368 Sum_probs=45.1
Q ss_pred CcchHHHHHHHHHhCCCCcEEEEcCC-CcccHHHHHHcCCCEEEEeccccCCCCHHHHH
Q psy11601 13 MQDMMPKVKWLRENYPTLNIEVDGGV-GPNTIDECAKAGANWIVSGTAVINCPDRIQAI 70 (82)
Q Consensus 13 ~~~~~~ki~~~~~~~~~~~i~~dGGI-~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~ 70 (82)
.|..++.++++++..+++||.+-||| +++.+.++.+ |+|+|.+|++++..+..-..+
T Consensus 189 ~~~~~~~i~~v~~~~~~iPVI~nGgI~s~eda~~~l~-~aDgVmIGRa~l~nP~~~~~~ 246 (333)
T PRK11815 189 PPLDYDRVYRLKRDFPHLTIEINGGIKTLEEAKEHLQ-HVDGVMIGRAAYHNPYLLAEV 246 (333)
T ss_pred CCcCHHHHHHHHHhCCCCeEEEECCcCCHHHHHHHHh-cCCEEEEcHHHHhCCHHHHHH
Confidence 34557888888887667999999999 7888888886 799999999988765544333
No 153
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=97.19 E-value=0.0011 Score=45.75 Aligned_cols=50 Identities=16% Similarity=0.204 Sum_probs=41.4
Q ss_pred chHHHHHHHHHhCCCCcEEEEcCC-CcccHHHHHHcCCCEEEEeccccCCCC
Q psy11601 15 DMMPKVKWLRENYPTLNIEVDGGV-GPNTIDECAKAGANWIVSGTAVINCPD 65 (82)
Q Consensus 15 ~~~~ki~~~~~~~~~~~i~~dGGI-~~~ni~~~~~~Gad~vv~gs~i~~~~d 65 (82)
..++-++++.+.. .+|+.+.||| +.+.+..+...|++.+++|++++..++
T Consensus 61 ~n~~~i~~i~~~~-~~pv~~gGGi~s~~d~~~l~~~G~~~vvigs~~~~~~~ 111 (258)
T PRK01033 61 PNYELIENLASEC-FMPLCYGGGIKTLEQAKKIFSLGVEKVSINTAALEDPD 111 (258)
T ss_pred ccHHHHHHHHHhC-CCCEEECCCCCCHHHHHHHHHCCCCEEEEChHHhcCHH
Confidence 3466677777663 6899999999 889999999999999999999886543
No 154
>PRK06801 hypothetical protein; Provisional
Probab=97.17 E-value=0.0017 Score=45.73 Aligned_cols=47 Identities=13% Similarity=0.164 Sum_probs=42.2
Q ss_pred chHHHHHHHHHhCCCCcEEEEcC--CCcccHHHHHHcCCCEEEEeccccC
Q psy11601 15 DMMPKVKWLRENYPTLNIEVDGG--VGPNTIDECAKAGANWIVSGTAVIN 62 (82)
Q Consensus 15 ~~~~ki~~~~~~~~~~~i~~dGG--I~~~ni~~~~~~Gad~vv~gs~i~~ 62 (82)
-.++.++++++.. ++|++..|| |+.+++..+.++|++.|-++|.++.
T Consensus 190 l~~e~l~~i~~~~-~~PLVlHGGSgi~~e~~~~~i~~Gi~KINv~T~~~~ 238 (286)
T PRK06801 190 LDFARLAAIHQQT-GLPLVLHGGSGISDADFRRAIELGIHKINFYTGMSQ 238 (286)
T ss_pred CCHHHHHHHHHhc-CCCEEEECCCCCCHHHHHHHHHcCCcEEEehhHHHH
Confidence 5778888888775 589999999 9999999999999999999999874
No 155
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2. Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.
Probab=97.16 E-value=0.00099 Score=47.59 Aligned_cols=63 Identities=13% Similarity=0.198 Sum_probs=44.8
Q ss_pred hHHHHHHHHHhCCCCcEEEEcCC-CcccHHHHHHcCCCEEEEeccccCC---CCHH---HHHHHHHHHHH
Q psy11601 16 MMPKVKWLRENYPTLNIEVDGGV-GPNTIDECAKAGANWIVSGTAVINC---PDRI---QAISTLKSSVQ 78 (82)
Q Consensus 16 ~~~ki~~~~~~~~~~~i~~dGGI-~~~ni~~~~~~Gad~vv~gs~i~~~---~d~~---~~~~~l~~~~~ 78 (82)
..+.|.++++...++||.++||| +...+..++..|||.+.++++++.+ .++. ..++.+.+.++
T Consensus 241 t~~~l~~~~~~~~~ipVIasGGI~~~~di~kaLalGAd~V~igr~~L~~~~~~g~~~v~~~i~~~~~eL~ 310 (333)
T TIGR02151 241 TAASLLEVRSDAPDAPIIASGGLRTGLDVAKAIALGADAVGMARPFLKAALDEGEEAVIEEIELIIEELK 310 (333)
T ss_pred HHHHHHHHHhcCCCCeEEEECCCCCHHHHHHHHHhCCCeehhhHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 34556666653346999999999 8899999999999999999997631 2333 44444554444
No 156
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=97.15 E-value=0.0021 Score=45.85 Aligned_cols=65 Identities=20% Similarity=0.301 Sum_probs=53.3
Q ss_pred ccCCCCCCCCCC-cchHHHHHHHHHhCCCCcEEEEcCC-CcccHHHHHH-cCCCEEEEeccccCCCCH
Q psy11601 2 TVEPGFGGQKFM-QDMMPKVKWLRENYPTLNIEVDGGV-GPNTIDECAK-AGANWIVSGTAVINCPDR 66 (82)
Q Consensus 2 ~v~pG~~gq~~~-~~~~~ki~~~~~~~~~~~i~~dGGI-~~~ni~~~~~-~Gad~vv~gs~i~~~~d~ 66 (82)
+||.-...|.+. |..++.|+++++..+++||.+-|+| +.+.+.++++ .|+|++.+|++.++.+.+
T Consensus 170 tVHgRtr~~~y~~~ad~~~I~~vk~~~~~ipvi~NGdI~s~~~a~~~l~~tg~DgVMigRga~~nP~l 237 (323)
T COG0042 170 TVHGRTRAQGYLGPADWDYIKELKEAVPSIPVIANGDIKSLEDAKEMLEYTGADGVMIGRGALGNPWL 237 (323)
T ss_pred EEecccHHhcCCCccCHHHHHHHHHhCCCCeEEeCCCcCCHHHHHHHHHhhCCCEEEEcHHHccCCcH
Confidence 566666667665 4788999999998866999999998 8899998888 579999999998876554
No 157
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=97.13 E-value=0.0016 Score=44.84 Aligned_cols=47 Identities=21% Similarity=0.307 Sum_probs=39.4
Q ss_pred hHHHHHHHHHhCCCCcEEEEcCCCc-ccHHHHH-HcCCCEEEEeccccCC
Q psy11601 16 MMPKVKWLRENYPTLNIEVDGGVGP-NTIDECA-KAGANWIVSGTAVINC 63 (82)
Q Consensus 16 ~~~ki~~~~~~~~~~~i~~dGGI~~-~ni~~~~-~~Gad~vv~gs~i~~~ 63 (82)
.++.++++++.. ++|+.+.|||+- +.+.++. +.|++++++|+++.-.
T Consensus 184 d~~~i~~~~~~~-~ipvIasGGv~s~eD~~~l~~~~GvdgVivg~a~~~~ 232 (258)
T PRK01033 184 DLELLKSFRNAL-KIPLIALGGAGSLDDIVEAILNLGADAAAAGSLFVFK 232 (258)
T ss_pred CHHHHHHHHhhC-CCCEEEeCCCCCHHHHHHHHHHCCCCEEEEcceeeeC
Confidence 677778877764 699999999987 8999988 8999999999996433
No 158
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=97.11 E-value=0.0017 Score=43.74 Aligned_cols=49 Identities=22% Similarity=0.364 Sum_probs=39.4
Q ss_pred hHHHHHHHHHhCCCCcEEEEcCCC-cccHHHHHHcCCCEEEEeccccCCCC
Q psy11601 16 MMPKVKWLRENYPTLNIEVDGGVG-PNTIDECAKAGANWIVSGTAVINCPD 65 (82)
Q Consensus 16 ~~~ki~~~~~~~~~~~i~~dGGI~-~~ni~~~~~~Gad~vv~gs~i~~~~d 65 (82)
.++-++++++.. +.|+.+.||++ .+.+..+...|++.+++|++++..++
T Consensus 62 n~~~~~~i~~~~-~~pv~~~ggi~~~~d~~~~~~~G~~~vilg~~~l~~~~ 111 (232)
T TIGR03572 62 LFELISNLAEEC-FMPLTVGGGIRSLEDAKKLLSLGADKVSINTAALENPD 111 (232)
T ss_pred CHHHHHHHHHhC-CCCEEEECCCCCHHHHHHHHHcCCCEEEEChhHhcCHH
Confidence 445566666654 58999999998 57888999999999999999986543
No 159
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=97.09 E-value=0.00081 Score=46.73 Aligned_cols=57 Identities=25% Similarity=0.439 Sum_probs=44.8
Q ss_pred HHHHHHHHHhCC-CCcEEEEcCCC-cccHHHHHHcCCCEEEEeccccCCCCHHHHHHHH
Q psy11601 17 MPKVKWLRENYP-TLNIEVDGGVG-PNTIDECAKAGANWIVSGTAVINCPDRIQAISTL 73 (82)
Q Consensus 17 ~~ki~~~~~~~~-~~~i~~dGGI~-~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l 73 (82)
+++-.++....| ++.+++.+||+ ++++..+..+|+|.|.+|+++..++||.+.+++|
T Consensus 196 ~~~~~~l~~~ip~~~~~iseSGI~~~~d~~~l~~~G~davLVGe~lm~~~d~~~~~~~L 254 (254)
T PF00218_consen 196 LNRTEELAPLIPKDVIVISESGIKTPEDARRLARAGADAVLVGEALMRSPDPGEALREL 254 (254)
T ss_dssp THHHHHHHCHSHTTSEEEEESS-SSHHHHHHHCTTT-SEEEESHHHHTSSSHHHHHHHH
T ss_pred hHHHHHHHhhCccceeEEeecCCCCHHHHHHHHHCCCCEEEECHHHhCCCCHHHHHhcC
Confidence 344455555443 47788899997 6999999999999999999999999999998875
No 160
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=97.09 E-value=0.0022 Score=45.74 Aligned_cols=65 Identities=18% Similarity=0.313 Sum_probs=46.7
Q ss_pred ccCCCCC-CCCCC--------cchHHHHHHHHHhCCCCcEEEEcCCC-cccHHHHHHcCCCEEEEeccccCCCCHH
Q psy11601 2 TVEPGFG-GQKFM--------QDMMPKVKWLRENYPTLNIEVDGGVG-PNTIDECAKAGANWIVSGTAVINCPDRI 67 (82)
Q Consensus 2 ~v~pG~~-gq~~~--------~~~~~ki~~~~~~~~~~~i~~dGGI~-~~ni~~~~~~Gad~vv~gs~i~~~~d~~ 67 (82)
+||+++. .|.+. |..++.++++++..+++||..-|||. .+.+.++.. |+|++.+|++++..+.+-
T Consensus 159 tvHgRt~~~qg~sg~~~~~~~~~~~~~i~~vk~~~~~ipVi~NGdI~s~~da~~~l~-g~dgVMigRgal~nP~if 233 (318)
T TIGR00742 159 IVHARKAWLSGLSPKENREIPPLRYERVYQLKKDFPHLTIEINGGIKNSEQIKQHLS-HVDGVMVGREAYENPYLL 233 (318)
T ss_pred EEeCCchhhcCCCccccccCCchhHHHHHHHHHhCCCCcEEEECCcCCHHHHHHHHh-CCCEEEECHHHHhCCHHH
Confidence 5677664 33333 23577788888876679999999995 566666664 999999999988755443
No 161
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=97.07 E-value=0.002 Score=43.37 Aligned_cols=44 Identities=18% Similarity=0.308 Sum_probs=36.9
Q ss_pred hHHHHHHHHHhCCCCcEEEEcCCC-cccHHH-HHHcCCCEEEEeccc
Q psy11601 16 MMPKVKWLRENYPTLNIEVDGGVG-PNTIDE-CAKAGANWIVSGTAV 60 (82)
Q Consensus 16 ~~~ki~~~~~~~~~~~i~~dGGI~-~~ni~~-~~~~Gad~vv~gs~i 60 (82)
.++-++++++.. ++|+.+.|||+ .+.+.. +...|||.+++|+++
T Consensus 185 ~~~~~~~i~~~~-~ipvia~GGi~s~~di~~~l~~~gadgV~vg~a~ 230 (232)
T TIGR03572 185 DLELIKTVSDAV-SIPVIALGGAGSLDDLVEVALEAGASAVAAASLF 230 (232)
T ss_pred CHHHHHHHHhhC-CCCEEEECCCCCHHHHHHHHHHcCCCEEEEehhh
Confidence 467777777765 68999999998 567777 888999999999986
No 162
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=97.07 E-value=0.0022 Score=45.93 Aligned_cols=56 Identities=18% Similarity=0.356 Sum_probs=45.6
Q ss_pred chHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcC-CCEEEEeccccCCCCHHHHHH
Q psy11601 15 DMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAG-ANWIVSGTAVINCPDRIQAIS 71 (82)
Q Consensus 15 ~~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~G-ad~vv~gs~i~~~~d~~~~~~ 71 (82)
..++-.+++++.. ++||.+.|||+++.+.++++.| +|.|.+|+.+...+++..+++
T Consensus 272 ~~~~~~~~ik~~~-~ipvi~~G~i~~~~a~~~l~~g~~D~V~~gR~~ladP~~~~k~~ 328 (338)
T cd02933 272 QPPDFLDFLRKAF-KGPLIAAGGYDAESAEAALADGKADLVAFGRPFIANPDLVERLK 328 (338)
T ss_pred cchHHHHHHHHHc-CCCEEEECCCCHHHHHHHHHcCCCCEEEeCHhhhhCcCHHHHHh
Confidence 3444455666665 6899999999999999999987 999999999998888766553
No 163
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=97.06 E-value=0.0018 Score=47.35 Aligned_cols=72 Identities=15% Similarity=0.104 Sum_probs=51.0
Q ss_pred CCCCCCCcchHHHHHHHHHhCC-----CCcEEEEcCCC-cccHHHHHHcCCCEEEEeccccCC-CCH-HHHHHHHHHHHH
Q psy11601 7 FGGQKFMQDMMPKVKWLRENYP-----TLNIEVDGGVG-PNTIDECAKAGANWIVSGTAVINC-PDR-IQAISTLKSSVQ 78 (82)
Q Consensus 7 ~~gq~~~~~~~~ki~~~~~~~~-----~~~i~~dGGI~-~~ni~~~~~~Gad~vv~gs~i~~~-~d~-~~~~~~l~~~~~ 78 (82)
+.|....|-.+..++++++... ++||...|||. .+.+.+++.+||+.|=++|+++.. ++. .+-.+.|.+.++
T Consensus 243 lSG~alkpiAl~~v~~i~~~~~~~~~~~ipIiGvGGI~s~~Da~e~i~aGAs~VQv~Ta~~~~Gp~vi~~i~~~L~~~m~ 322 (385)
T PLN02495 243 YSSKAVRPIALAKVMAIAKMMKSEFPEDRSLSGIGGVETGGDAAEFILLGADTVQVCTGVMMHGYPLVKNLCAELQDFMK 322 (385)
T ss_pred ccchhhhHHHHHHHHHHHHHHhhhccCCCcEEEECCCCCHHHHHHHHHhCCCceeEeeeeeecCcHHHHHHHHHHHHHHH
Confidence 4455566777777777766532 58999999995 688999999999999999998753 433 233344544433
No 164
>KOG1606|consensus
Probab=97.06 E-value=0.0029 Score=43.60 Aligned_cols=46 Identities=17% Similarity=0.336 Sum_probs=39.1
Q ss_pred EEEcCC-CcccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHHHH
Q psy11601 33 EVDGGV-GPNTIDECAKAGANWIVSGTAVINCPDRIQAISTLKSSVQ 78 (82)
Q Consensus 33 ~~dGGI-~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~~~ 78 (82)
.+.||+ ++.....+.+.|+|++-+||.||.+.||......+-+...
T Consensus 213 FAaGGvaTPADAALmMQLGCdGVFVGSgiFks~dP~k~a~aiVqAvt 259 (296)
T KOG1606|consen 213 FAAGGVATPADAALMMQLGCDGVFVGSGIFKSGDPVKRARAIVQAVT 259 (296)
T ss_pred ecccCcCChhHHHHHHHcCCCeEEeccccccCCCHHHHHHHHHHHHH
Confidence 356665 7889999999999999999999999999988888776543
No 165
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=97.05 E-value=0.00076 Score=45.74 Aligned_cols=53 Identities=25% Similarity=0.335 Sum_probs=40.5
Q ss_pred CCCCCCcchHHHHHHHHHhCCCCcEEEEcCC-CcccHHHHHHcCCCEEEEeccccC
Q psy11601 8 GGQKFMQDMMPKVKWLRENYPTLNIEVDGGV-GPNTIDECAKAGANWIVSGTAVIN 62 (82)
Q Consensus 8 ~gq~~~~~~~~ki~~~~~~~~~~~i~~dGGI-~~~ni~~~~~~Gad~vv~gs~i~~ 62 (82)
.|..--+ .++.++++++.. +.|+.+.||| +.+.+.++.+.|++.+++|++++.
T Consensus 172 dGt~~G~-d~~~~~~l~~~~-~~~viasGGv~~~~Dl~~l~~~G~~gvivg~al~~ 225 (229)
T PF00977_consen 172 DGTMQGP-DLELLKQLAEAV-NIPVIASGGVRSLEDLRELKKAGIDGVIVGSALHE 225 (229)
T ss_dssp TTTSSS---HHHHHHHHHHH-SSEEEEESS--SHHHHHHHHHTTECEEEESHHHHT
T ss_pred cCCcCCC-CHHHHHHHHHHc-CCCEEEecCCCCHHHHHHHHHCCCcEEEEehHhhC
Confidence 3433333 246677777665 6899999999 779999999999999999999875
No 166
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=97.05 E-value=0.0019 Score=44.31 Aligned_cols=60 Identities=22% Similarity=0.355 Sum_probs=46.7
Q ss_pred ccCCCCCCCCCCcchHHHHHHHHHhCCCCcEEEEcCCCc-ccHHHHHHcCCCEEEEeccccCC
Q psy11601 2 TVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGP-NTIDECAKAGANWIVSGTAVINC 63 (82)
Q Consensus 2 ~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~i~~dGGI~~-~ni~~~~~~Gad~vv~gs~i~~~ 63 (82)
+|+.++.|.+. ..++.|+++++..+++||.+-|||.- +.+.+++.+|||.|.++++++..
T Consensus 166 ~Vd~~~~g~~~--a~~~~I~~i~~~~~~ipIIgNGgI~s~eda~e~l~~GAd~VmvgR~~l~~ 226 (231)
T TIGR00736 166 HVDAMYPGKPY--ADMDLLKILSEEFNDKIIIGNNSIDDIESAKEMLKAGADFVSVARAILKG 226 (231)
T ss_pred EEeeCCCCCch--hhHHHHHHHHHhcCCCcEEEECCcCCHHHHHHHHHhCCCeEEEcHhhccC
Confidence 34545555321 46888999888764599999999965 89999999999999999988753
No 167
>PRK14565 triosephosphate isomerase; Provisional
Probab=97.04 E-value=0.0027 Score=43.77 Aligned_cols=65 Identities=15% Similarity=0.174 Sum_probs=51.8
Q ss_pred CCCCCCcchHHHHHH-HHHhCCCCcEEEEcCCCcccHHHHHHc-CCCEEEEeccccCCCCHHHHHHH
Q psy11601 8 GGQKFMQDMMPKVKW-LRENYPTLNIEVDGGVGPNTIDECAKA-GANWIVSGTAVINCPDRIQAIST 72 (82)
Q Consensus 8 ~gq~~~~~~~~ki~~-~~~~~~~~~i~~dGGI~~~ni~~~~~~-Gad~vv~gs~i~~~~d~~~~~~~ 72 (82)
.|+.-.|+..+++.+ +|+...+++|.-=|+++++|+.++.+. ++|++-+|++..+++++..-++.
T Consensus 167 tG~~a~~e~i~~~~~~Ir~~~~~~~IlYGGSV~~~N~~~l~~~~~iDG~LvG~asl~~~~f~~ii~~ 233 (237)
T PRK14565 167 GSTIPSNDAIAEAFEIIRSYDSKSHIIYGGSVNQENIRDLKSINQLSGVLVGSASLDVDSFCKIIQQ 233 (237)
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCceEEEcCccCHhhHHHHhcCCCCCEEEEechhhcHHHHHHHHHH
Confidence 466677777777666 555555789999999999999999876 89999999999987777655544
No 168
>PRK06852 aldolase; Validated
Probab=97.03 E-value=0.0028 Score=45.12 Aligned_cols=62 Identities=13% Similarity=0.112 Sum_probs=45.8
Q ss_pred HHHHHHHHhCCCCcEEEEcCCCcc------cHHHHHH-cCCCEEEEeccccCCCCH--HHHHHHHHHHHHH
Q psy11601 18 PKVKWLRENYPTLNIEVDGGVGPN------TIDECAK-AGANWIVSGTAVINCPDR--IQAISTLKSSVQK 79 (82)
Q Consensus 18 ~ki~~~~~~~~~~~i~~dGGI~~~------ni~~~~~-~Gad~vv~gs~i~~~~d~--~~~~~~l~~~~~~ 79 (82)
+.++++.+...++|+++.||=+.. .+...++ +|+.++++|+-||+.++| .+.++.+..++.+
T Consensus 219 e~f~~vv~~~g~vpVviaGG~k~~~~e~L~~v~~ai~~aGa~Gv~~GRNIfQ~~~p~~~~~~~Ai~~IVH~ 289 (304)
T PRK06852 219 ELFKEAVLAAGRTKVVCAGGSSTDPEEFLKQLYEQIHISGASGNATGRNIHQKPLDEAVRMCNAIYAITVE 289 (304)
T ss_pred HHHHHHHHhCCCCcEEEeCCCCCCHHHHHHHHHHHHHHcCCceeeechhhhcCCCchHHHHHHHHHHHHhC
Confidence 445554444435899999998853 2344556 899999999999998887 8888888876643
No 169
>PLN02826 dihydroorotate dehydrogenase
Probab=97.02 E-value=0.0045 Score=45.62 Aligned_cols=57 Identities=18% Similarity=0.161 Sum_probs=48.4
Q ss_pred CCCCCCCCcchHHHHHHHHHhC-CCCcEEEEcCCC-cccHHHHHHcCCCEEEEeccccC
Q psy11601 6 GFGGQKFMQDMMPKVKWLRENY-PTLNIEVDGGVG-PNTIDECAKAGANWIVSGTAVIN 62 (82)
Q Consensus 6 G~~gq~~~~~~~~ki~~~~~~~-~~~~i~~dGGI~-~~ni~~~~~~Gad~vv~gs~i~~ 62 (82)
|..|.+..+..++-++++++.. .++||..+|||. .+.+-+.+.+||+.+=++|+++.
T Consensus 317 GlSG~pl~~~sl~~v~~l~~~~~~~ipIIgvGGI~sg~Da~e~i~AGAs~VQv~Ta~~~ 375 (409)
T PLN02826 317 GLSGKPLFDLSTEVLREMYRLTRGKIPLVGCGGVSSGEDAYKKIRAGASLVQLYTAFAY 375 (409)
T ss_pred CcCCccccHHHHHHHHHHHHHhCCCCcEEEECCCCCHHHHHHHHHhCCCeeeecHHHHh
Confidence 4678888888999999988764 369999999996 56899999999999999999654
No 170
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.
Probab=96.90 E-value=0.00058 Score=48.89 Aligned_cols=64 Identities=20% Similarity=0.283 Sum_probs=51.1
Q ss_pred CCCCCCCCcchHHHHHHHHHhCC-CCcEEEEcCCC-cccHHHHHHcCCCEEEEeccccC-CCCHHHH
Q psy11601 6 GFGGQKFMQDMMPKVKWLRENYP-TLNIEVDGGVG-PNTIDECAKAGANWIVSGTAVIN-CPDRIQA 69 (82)
Q Consensus 6 G~~gq~~~~~~~~ki~~~~~~~~-~~~i~~dGGI~-~~ni~~~~~~Gad~vv~gs~i~~-~~d~~~~ 69 (82)
|+.|....|-.++.++++++..+ ++||.+.|||. .+.+.+++.+||+.+-++|+++. .+++...
T Consensus 264 GlSG~~i~p~al~~v~~~~~~~~~~ipiig~GGI~~~~da~e~l~aGA~~Vqv~ta~~~~Gp~~~~~ 330 (335)
T TIGR01036 264 GLSGKPLQDKSTEIIRRLYAELQGRLPIIGVGGISSAQDALEKIRAGASLLQIYSGFIYWGPPLVKE 330 (335)
T ss_pred cccCHHHHHHHHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcCCcHHHhhHHHHHhCchHHHH
Confidence 46677777888888999887653 69999999996 45699999999999999999765 4555433
No 171
>PF00215 OMPdecase: Orotidine 5'-phosphate decarboxylase / HUMPS family; InterPro: IPR001754 Orotidine 5'-phosphate decarboxylase (OMPdecase) [, ] catalyses the last step in the de novo biosynthesis of pyrimidines, the decarboxylation of OMP into UMP. In higher eukaryotes OMPdecase is part, with orotate phosphoribosyltransferase, of a bifunctional enzyme, while the prokaryotic and fungal OMPdecases are monofunctional protein. Some parts of the sequence of OMPdecase are well conserved across species. The best conserved region is located in the N-terminal half of OMPdecases and is centred around a lysine residue which is essential for the catalytic function of the enzyme. This entry also includes enzymes such as 3-hexulose-6-phosphate synthase 4.1.2.43 from EC and 3-keto-L-gulonate-6-phosphate decarboxylase 4.1.1.85 from EC.; GO: 0004590 orotidine-5'-phosphate decarboxylase activity, 0006207 'de novo' pyrimidine base biosynthetic process; PDB: 2YYT_D 2YYU_B 3RU6_D 2CZE_B 2CZ5_B 2CZF_A 2CZD_A 3R89_A 2ZCG_A 2ZA1_A ....
Probab=96.88 E-value=0.00073 Score=45.53 Aligned_cols=43 Identities=33% Similarity=0.417 Sum_probs=38.4
Q ss_pred cEEEEcCCCcccHHHHHH-cCCCEEEEeccccCCCCHHHHHHHH
Q psy11601 31 NIEVDGGVGPNTIDECAK-AGANWIVSGTAVINCPDRIQAISTL 73 (82)
Q Consensus 31 ~i~~dGGI~~~ni~~~~~-~Gad~vv~gs~i~~~~d~~~~~~~l 73 (82)
.....||++....+.+.. .|+|.+++|++|..++||.++++++
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~g~d~iiVGR~I~~a~dp~~aa~~i 226 (226)
T PF00215_consen 183 QGAVAGGQKRATTPAAAKQAGADIIIVGRAITKAEDPREAAEEI 226 (226)
T ss_dssp TCEECSSHHCHHHHHHHHHTTGSEEEESHHHHTSSSHHHHHHHH
T ss_pred cccCcccccccccHHHHHhcCCEEEEEChHHhCCCCHHHHHhcC
Confidence 578889999998988877 8899999999999999999988864
No 172
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=96.88 E-value=0.0074 Score=41.87 Aligned_cols=61 Identities=20% Similarity=0.350 Sum_probs=51.7
Q ss_pred HHHHHHHHHhCCCCcEEEEcCCC-cccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHHHH
Q psy11601 17 MPKVKWLRENYPTLNIEVDGGVG-PNTIDECAKAGANWIVSGTAVINCPDRIQAISTLKSSVQ 78 (82)
Q Consensus 17 ~~ki~~~~~~~~~~~i~~dGGI~-~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~~~ 78 (82)
-..|+-+++.. ++|+.||-||. +....+..+.|+|.|-+-++|-.+.||....+.|+..++
T Consensus 171 ~~~l~iiie~a-~VPviVDAGiG~pSdAa~aMElG~DaVL~NTAiA~A~DPv~MA~Af~~Av~ 232 (262)
T COG2022 171 PYNLEIIIEEA-DVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIARAKDPVAMARAFALAVE 232 (262)
T ss_pred HHHHHHHHHhC-CCCEEEeCCCCChhHHHHHHhcccceeehhhHhhccCChHHHHHHHHHHHH
Confidence 34456666665 79999999995 688999999999999999999999999999888887654
No 173
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=96.84 E-value=0.0025 Score=45.31 Aligned_cols=53 Identities=15% Similarity=0.292 Sum_probs=44.5
Q ss_pred HHHHHHHHHhCCCCcEEEEcCC-CcccHHHHHHcC-CCEEEEeccccCCCCHHHHH
Q psy11601 17 MPKVKWLRENYPTLNIEVDGGV-GPNTIDECAKAG-ANWIVSGTAVINCPDRIQAI 70 (82)
Q Consensus 17 ~~ki~~~~~~~~~~~i~~dGGI-~~~ni~~~~~~G-ad~vv~gs~i~~~~d~~~~~ 70 (82)
++..+++++.. ++||.+.||| +++.+.++++.| +|.|.+|++++..+|+...+
T Consensus 279 ~~~~~~ir~~~-~iPVi~~G~i~t~~~a~~~l~~g~aD~V~~gR~~i~dP~~~~k~ 333 (336)
T cd02932 279 VPFAERIRQEA-GIPVIAVGLITDPEQAEAILESGRADLVALGRELLRNPYWPLHA 333 (336)
T ss_pred HHHHHHHHhhC-CCCEEEeCCCCCHHHHHHHHHcCCCCeehhhHHHHhCccHHHHH
Confidence 45566777765 6899999999 899999999998 99999999999888876544
No 174
>PF00697 PRAI: N-(5'phosphoribosyl)anthranilate (PRA) isomerase; InterPro: IPR001240 Indole-3-glycerol phosphate synthase (IGPS) (see IPR001468 from INTERPRO) catalyzes the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyzes N-(5-phosphoribosyl)anthranilate isomerase (PRAI) activity, the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (GATase) N-terminal domain (see IPR000991 from INTERPRO). Phosphoribosylanthranilate isomerase (PRAI) is monomeric and labile in most mesophilic microorganisms, but dimeric and stable in the hyperthermophile Thermotoga maritima (tPRAI) []. The comparison to the known 2.0 A structure of PRAI from Escherichia coli (ePRAI) shows that tPRAI has the complete TIM- or (beta alp ha)8-barrel fold, whereas helix alpha5 in ePRAI is replaced by a loop. The subunits of tPRAI associate via the N-terminal faces of their central beta-barrels. Two long, symmetry-related loops that protrude reciprocally into cavities of the other subunit provide for multiple hydrophobic interactions. Moreover, the side chains of the N-terminal methionines and the C-terminal leucines of both subunits are immobilized in a hydrophobic cluster, and the number of salt bridges is increased in tPRAI. These features appear to be mainly responsible for the high thermostability of tPRAI []. ; GO: 0004640 phosphoribosylanthranilate isomerase activity, 0006568 tryptophan metabolic process; PDB: 1V5X_A 1PII_A 1JCM_P 2KZH_A 1LBM_A 1DL3_A 1NSJ_A.
Probab=96.83 E-value=0.0014 Score=43.58 Aligned_cols=56 Identities=16% Similarity=0.248 Sum_probs=39.1
Q ss_pred CCCCCCCCCcchHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHH-cCCCEEEEeccccCC
Q psy11601 5 PGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAK-AGANWIVSGTAVINC 63 (82)
Q Consensus 5 pG~~gq~~~~~~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~-~Gad~vv~gs~i~~~ 63 (82)
.|-.|+.|.-+.+.++.+... +.|+...||++++|+.++++ ..+.+|=+.|.+=.+
T Consensus 126 ~GgtG~~~dw~~~~~~~~~~~---~~p~iLAGGl~p~NV~~ai~~~~p~gvDvsSGvE~~ 182 (197)
T PF00697_consen 126 SGGTGKTFDWSLLKKIVESYS---PKPVILAGGLNPENVREAIRQVRPYGVDVSSGVETS 182 (197)
T ss_dssp STSSSS---GGGGCCCHHT-G---TSTEEEESS--TTTHHHHHHHC--SEEEESGGGEEE
T ss_pred CCcCCcccCHHHhhhhhhhcc---cCcEEEEcCCChHHHHHHHHhcCceEEEeCCccccC
Confidence 566788898888877665333 57999999999999999999 899999999988543
No 175
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=96.82 E-value=0.0034 Score=42.65 Aligned_cols=47 Identities=17% Similarity=0.229 Sum_probs=39.3
Q ss_pred hHHHHHHHHHhCCCCcEEEEcCCCc-ccHHHHHHcCCCEEEEeccccCC
Q psy11601 16 MMPKVKWLRENYPTLNIEVDGGVGP-NTIDECAKAGANWIVSGTAVINC 63 (82)
Q Consensus 16 ~~~ki~~~~~~~~~~~i~~dGGI~~-~ni~~~~~~Gad~vv~gs~i~~~ 63 (82)
.++-++++.+.. ++|+.+-|||+- +.+..+...|++.+++||+++..
T Consensus 177 ~~~~~~~i~~~~-~ipvi~~GGi~s~edi~~l~~~G~~~vivGsal~~g 224 (233)
T cd04723 177 DLELLERLAARA-DIPVIAAGGVRSVEDLELLKKLGASGALVASALHDG 224 (233)
T ss_pred CHHHHHHHHHhc-CCCEEEeCCCCCHHHHHHHHHcCCCEEEEehHHHcC
Confidence 455666666663 689999999976 99999999999999999998864
No 176
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=96.82 E-value=0.0052 Score=41.34 Aligned_cols=68 Identities=18% Similarity=0.269 Sum_probs=45.8
Q ss_pred CCCCCCCCcchHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHc-CCCEEEEeccccCC---CCHHHHHHHHHHHHHHhh
Q psy11601 6 GFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKA-GANWIVSGTAVINC---PDRIQAISTLKSSVQKYL 81 (82)
Q Consensus 6 G~~gq~~~~~~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~-Gad~vv~gs~i~~~---~d~~~~~~~l~~~~~~~~ 81 (82)
|-.|..|.-..+. ++. +.|+...|||+++|+.++.+. ++.++=+.|.+=.. .|+ +.+++|.+.+++..
T Consensus 138 GGtG~~~dw~~l~-----~~~--~~p~~LAGGi~peNv~~ai~~~~p~gvDvsSgvE~~~G~KD~-~ki~~f~~~~~~~~ 209 (210)
T PRK01222 138 GGTGKTFDWSLLP-----AGL--AKPWILAGGLNPDNVAEAIRQVRPYGVDVSSGVESAPGIKDP-EKIRAFIEAVKSAD 209 (210)
T ss_pred CCCCCccchHHhh-----hcc--CCCEEEECCCCHHHHHHHHHhcCCCEEEecCceECCCCCcCH-HHHHHHHHHHHhhc
Confidence 4556666544331 112 458999999999999999875 88888888887543 343 46666666666543
No 177
>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=96.80 E-value=0.0061 Score=43.56 Aligned_cols=73 Identities=25% Similarity=0.246 Sum_probs=56.7
Q ss_pred CCCCCCCCcchHHHHHHHHHh-CCCCcEEEEcCCC-cccHHHHHHcCCCEEEEeccccC-CCCHHH-HHHHHHHHHH
Q psy11601 6 GFGGQKFMQDMMPKVKWLREN-YPTLNIEVDGGVG-PNTIDECAKAGANWIVSGTAVIN-CPDRIQ-AISTLKSSVQ 78 (82)
Q Consensus 6 G~~gq~~~~~~~~ki~~~~~~-~~~~~i~~dGGI~-~~ni~~~~~~Gad~vv~gs~i~~-~~d~~~-~~~~l~~~~~ 78 (82)
|..|.+..|-.++-|+++++. .+++||...|||. .+++-+.+.+||+.+=++|+++. .+.+-+ -.+.|.+.++
T Consensus 217 GLSG~~ikp~al~~v~~l~~~~~~~ipIIGvGGI~s~~DA~E~i~aGA~~vQv~Tal~~~Gp~i~~~I~~~l~~~l~ 293 (310)
T COG0167 217 GLSGPPLKPIALRVVAELYKRLGGDIPIIGVGGIETGEDALEFILAGASAVQVGTALIYKGPGIVKEIIKGLARWLE 293 (310)
T ss_pred CcCcccchHHHHHHHHHHHHhcCCCCcEEEecCcCcHHHHHHHHHcCCchheeeeeeeeeCchHHHHHHHHHHHHHH
Confidence 577889999999999998876 3469999999996 56699999999999999999775 355433 3344555443
No 178
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=96.80 E-value=0.0074 Score=41.23 Aligned_cols=58 Identities=12% Similarity=0.095 Sum_probs=43.7
Q ss_pred hHHHHHHHHHhCCCCcEEEEcCCCc-ccHHHHHH-cCCCEEEEeccccC-CCCHHHHHHHHH
Q psy11601 16 MMPKVKWLRENYPTLNIEVDGGVGP-NTIDECAK-AGANWIVSGTAVIN-CPDRIQAISTLK 74 (82)
Q Consensus 16 ~~~ki~~~~~~~~~~~i~~dGGI~~-~ni~~~~~-~Gad~vv~gs~i~~-~~d~~~~~~~l~ 74 (82)
.++-++++++.. ++|+.+.||++- +.+.++.+ .|++.+++|++++. .-++.+..+.++
T Consensus 185 d~~~i~~~~~~~-~ipvia~GGv~s~~d~~~~~~~~G~~gvivg~al~~~~~~~~~~~~~~~ 245 (253)
T PRK02083 185 DLELTRAVSDAV-NVPVIASGGAGNLEHFVEAFTEGGADAALAASIFHFGEITIGELKAYLA 245 (253)
T ss_pred CHHHHHHHHhhC-CCCEEEECCCCCHHHHHHHHHhCCccEEeEhHHHHcCCCCHHHHHHHHH
Confidence 366777777765 589999999976 78888886 59999999999875 445554444443
No 179
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=96.78 E-value=0.0044 Score=43.89 Aligned_cols=47 Identities=17% Similarity=0.264 Sum_probs=39.0
Q ss_pred chHHHHHHHHHhCCCCcEEEEcCCCcc-cHHHHHHcCCCEEEEeccccC
Q psy11601 15 DMMPKVKWLRENYPTLNIEVDGGVGPN-TIDECAKAGANWIVSGTAVIN 62 (82)
Q Consensus 15 ~~~~ki~~~~~~~~~~~i~~dGGI~~~-ni~~~~~~Gad~vv~gs~i~~ 62 (82)
..+.-++++++.. ++||.+.|||.-. .+..++..|||++.+||.+..
T Consensus 148 ~~~~ll~~v~~~~-~iPviaaGGI~~~~~~~~al~~GA~gV~iGt~f~~ 195 (307)
T TIGR03151 148 TTMALVPQVVDAV-SIPVIAAGGIADGRGMAAAFALGAEAVQMGTRFLC 195 (307)
T ss_pred cHHHHHHHHHHHh-CCCEEEECCCCCHHHHHHHHHcCCCEeecchHHhc
Confidence 4577788887765 5899999999754 488999999999999998665
No 180
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=96.78 E-value=0.005 Score=41.26 Aligned_cols=47 Identities=19% Similarity=0.244 Sum_probs=39.9
Q ss_pred hHHHHHHHHHhCCCCcEEEEcCCCc-ccHHHHHHcCCCEEEEeccccCC
Q psy11601 16 MMPKVKWLRENYPTLNIEVDGGVGP-NTIDECAKAGANWIVSGTAVINC 63 (82)
Q Consensus 16 ~~~ki~~~~~~~~~~~i~~dGGI~~-~ni~~~~~~Gad~vv~gs~i~~~ 63 (82)
.++.++++++.. ++|+.+-|||+- +.+..+...|||++++|++++..
T Consensus 177 ~~~~i~~i~~~~-~ipvia~GGi~~~~di~~~~~~Gadgv~ig~a~~~~ 224 (230)
T TIGR00007 177 NFELTKELVKAV-NVPVIASGGVSSIDDLIALKKLGVYGVIVGKALYEG 224 (230)
T ss_pred CHHHHHHHHHhC-CCCEEEeCCCCCHHHHHHHHHCCCCEEEEeHHHHcC
Confidence 477778877764 689999999976 79999999999999999998753
No 181
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=96.76 E-value=0.0046 Score=41.75 Aligned_cols=40 Identities=28% Similarity=0.456 Sum_probs=32.8
Q ss_pred HHHHHHHHHhCCCCcEEEEcCC-CcccHHHHHHcCCCEEEEe
Q psy11601 17 MPKVKWLRENYPTLNIEVDGGV-GPNTIDECAKAGANWIVSG 57 (82)
Q Consensus 17 ~~ki~~~~~~~~~~~i~~dGGI-~~~ni~~~~~~Gad~vv~g 57 (82)
.+.++++++.. +.|+.+-||| +.+.++++.++|||.+|+|
T Consensus 165 ~e~i~~Vk~~~-~~Pv~vGGGIrs~e~a~~l~~~GAD~VVVG 205 (205)
T TIGR01769 165 PETISLVKKAS-GIPLIVGGGIRSPEIAYEIVLAGADAIVTG 205 (205)
T ss_pred HHHHHHHHHhh-CCCEEEeCCCCCHHHHHHHHHcCCCEEEeC
Confidence 45555555554 5899999999 7899999999999999987
No 182
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=96.76 E-value=0.0051 Score=44.35 Aligned_cols=64 Identities=17% Similarity=0.185 Sum_probs=45.5
Q ss_pred hHHHHHHHHHhCCCCcEEEEcCCC-cccHHHHHHcCCCEEEEeccccCC------CCHHHHHHHHHHHHHH
Q psy11601 16 MMPKVKWLRENYPTLNIEVDGGVG-PNTIDECAKAGANWIVSGTAVINC------PDRIQAISTLKSSVQK 79 (82)
Q Consensus 16 ~~~ki~~~~~~~~~~~i~~dGGI~-~~ni~~~~~~Gad~vv~gs~i~~~------~d~~~~~~~l~~~~~~ 79 (82)
..+-|.++++...++||.++|||+ ...+..++..|||.+-+|++++.+ +.....++.+.+.++.
T Consensus 248 t~~~l~~i~~~~~~ipvia~GGI~~~~dv~k~l~~GAd~v~ig~~~l~~~~~~g~~~v~~~i~~~~~eL~~ 318 (352)
T PRK05437 248 TAQSLLEARSLLPDLPIIASGGIRNGLDIAKALALGADAVGMAGPFLKAALEGGEEAVIELIEQWIEELKI 318 (352)
T ss_pred HHHHHHHHHHhcCCCeEEEECCCCCHHHHHHHHHcCCCEEEEhHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 555666666653479999999995 677888999999999999987653 2233455555555543
No 183
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=96.73 E-value=0.0045 Score=44.10 Aligned_cols=53 Identities=15% Similarity=0.171 Sum_probs=43.5
Q ss_pred HHHHHHHHhCCCCcEEEEcCC-CcccHHHHHHcC-CCEEEEeccccCCCCHHHHHH
Q psy11601 18 PKVKWLRENYPTLNIEVDGGV-GPNTIDECAKAG-ANWIVSGTAVINCPDRIQAIS 71 (82)
Q Consensus 18 ~ki~~~~~~~~~~~i~~dGGI-~~~ni~~~~~~G-ad~vv~gs~i~~~~d~~~~~~ 71 (82)
+-.+++++.. ++||.+.|+| +++.+.++++.| +|.|.+|+.+...+++..+++
T Consensus 282 ~~~~~ik~~v-~iPVi~~G~i~t~~~a~~~l~~g~aD~V~lgR~~iadP~~~~k~~ 336 (338)
T cd04733 282 EFAEKIRKVT-KTPLMVTGGFRTRAAMEQALASGAVDGIGLARPLALEPDLPNKLL 336 (338)
T ss_pred HHHHHHHHHc-CCCEEEeCCCCCHHHHHHHHHcCCCCeeeeChHhhhCccHHHHHh
Confidence 4455677765 6999999999 688999999887 899999999998888766553
No 184
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=96.73 E-value=0.0034 Score=46.28 Aligned_cols=43 Identities=23% Similarity=0.305 Sum_probs=35.5
Q ss_pred HHHHHHHhCCCCcEEEEcCC-CcccHHHHHHcCCCEEEEeccccC
Q psy11601 19 KVKWLRENYPTLNIEVDGGV-GPNTIDECAKAGANWIVSGTAVIN 62 (82)
Q Consensus 19 ki~~~~~~~~~~~i~~dGGI-~~~ni~~~~~~Gad~vv~gs~i~~ 62 (82)
.+.++.+.. ++||.+|||| +...+...+.+||+.+++|+++.+
T Consensus 247 ~v~~~~~~~-~vpVIAdGGI~~~~Di~KALalGA~aVmvGs~~ag 290 (404)
T PRK06843 247 DVYEVCKNT-NICIIADGGIRFSGDVVKAIAAGADSVMIGNLFAG 290 (404)
T ss_pred HHHHHHhhc-CCeEEEeCCCCCHHHHHHHHHcCCCEEEEcceeee
Confidence 344444332 6899999999 788999999999999999999987
No 185
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=96.65 E-value=0.0088 Score=41.69 Aligned_cols=56 Identities=25% Similarity=0.396 Sum_probs=45.6
Q ss_pred HHHHHHHhCC-CCcEEEEcCCC-cccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHH
Q psy11601 19 KVKWLRENYP-TLNIEVDGGVG-PNTIDECAKAGANWIVSGTAVINCPDRIQAISTLK 74 (82)
Q Consensus 19 ki~~~~~~~~-~~~i~~dGGI~-~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~ 74 (82)
.-.++....| +..++.-.||+ ++++..+...|+|.|-+|+++.+++|+.+.++++.
T Consensus 196 ~t~~la~~~p~~~~~IsESGI~~~~dv~~l~~~ga~a~LVG~slM~~~~~~~a~~~l~ 253 (254)
T COG0134 196 TTEKLAPLIPKDVILISESGISTPEDVRRLAKAGADAFLVGEALMRADDPEEALRELL 253 (254)
T ss_pred HHHHHHhhCCCCcEEEecCCCCCHHHHHHHHHcCCCEEEecHHHhcCCCHHHHHHHhh
Confidence 3344444443 36688889998 99999999999999999999999999988887763
No 186
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=96.62 E-value=0.0056 Score=42.26 Aligned_cols=48 Identities=31% Similarity=0.428 Sum_probs=35.8
Q ss_pred cchHHHHHHHHHhCCCCcEEEEcCCC-cccHHHHHHcCCCEEEEeccccCCC
Q psy11601 14 QDMMPKVKWLRENYPTLNIEVDGGVG-PNTIDECAKAGANWIVSGTAVINCP 64 (82)
Q Consensus 14 ~~~~~ki~~~~~~~~~~~i~~dGGI~-~~ni~~~~~~Gad~vv~gs~i~~~~ 64 (82)
|...+.+++.... .++.+=|||+ .+...++.++|||.+|+|+.+....
T Consensus 179 Pv~~e~v~~v~~~---~~LivGGGIrs~E~A~~~a~agAD~IVtG~iiee~~ 227 (240)
T COG1646 179 PVPVEMVSRVLSD---TPLIVGGGIRSPEQAREMAEAGADTIVTGTIIEEDP 227 (240)
T ss_pred CcCHHHHHHhhcc---ceEEEcCCcCCHHHHHHHHHcCCCEEEECceeecCH
Confidence 3444445544443 4899999996 5777889999999999999998644
No 187
>PLN02411 12-oxophytodienoate reductase
Probab=96.60 E-value=0.0051 Score=44.93 Aligned_cols=52 Identities=21% Similarity=0.321 Sum_probs=43.9
Q ss_pred HHHHHHhCCCCcEEEEcCCCcccHHHHHHcC-CCEEEEeccccCCCCHHHHHHH
Q psy11601 20 VKWLRENYPTLNIEVDGGVGPNTIDECAKAG-ANWIVSGTAVINCPDRIQAIST 72 (82)
Q Consensus 20 i~~~~~~~~~~~i~~dGGI~~~ni~~~~~~G-ad~vv~gs~i~~~~d~~~~~~~ 72 (82)
.+++++.. +.|+.+.|+++.+...++++.| +|.|.+|+++...+|+...+++
T Consensus 305 a~~ik~~v-~~pvi~~G~i~~~~a~~~l~~g~aDlV~~gR~~iadPdl~~k~~~ 357 (391)
T PLN02411 305 MRTLRRAY-QGTFMCSGGFTRELGMQAVQQGDADLVSYGRLFISNPDLVLRFKL 357 (391)
T ss_pred HHHHHHHc-CCCEEEECCCCHHHHHHHHHcCCCCEEEECHHHHhCccHHHHHhc
Confidence 35566665 5799999999999999999999 9999999999988898766643
No 188
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=96.59 E-value=0.0054 Score=41.56 Aligned_cols=67 Identities=22% Similarity=0.408 Sum_probs=49.9
Q ss_pred CCCCCCCCCcchHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCC-CEEEEeccccCC---CCHHHHHHHHHHHHH
Q psy11601 5 PGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGA-NWIVSGTAVINC---PDRIQAISTLKSSVQ 78 (82)
Q Consensus 5 pG~~gq~~~~~~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Ga-d~vv~gs~i~~~---~d~~~~~~~l~~~~~ 78 (82)
+|-.||.|.-+.+... ....|+...||+|++|+.+.++.+. .++=+.|.+=.+ .|+. .+++|.+.++
T Consensus 136 ~GGtG~~fDW~~l~~~------~~~~~~~LAGGL~p~NV~~ai~~~~p~gvDvSSGVE~~pG~KD~~-kv~~f~~~vk 206 (208)
T COG0135 136 PGGTGQTFDWNLLPKL------RLSKPVMLAGGLNPDNVAEAIALGPPYGVDVSSGVESSPGIKDPA-KVKAFFEAVK 206 (208)
T ss_pred CCCCCcEECHHHhccc------cccCCEEEECCCCHHHHHHHHHhcCCceEEeccccccCCCCCCHH-HHHHHHHHHh
Confidence 6888999887666555 1245799999999999999999998 888788887543 3543 5666655544
No 189
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=96.58 E-value=0.0024 Score=45.85 Aligned_cols=53 Identities=21% Similarity=0.392 Sum_probs=42.7
Q ss_pred HHHHHHHhC-CCCcEEEEcCC-CcccHHHHHHcCCCEEEEeccccCCCCHHHHHH
Q psy11601 19 KVKWLRENY-PTLNIEVDGGV-GPNTIDECAKAGANWIVSGTAVINCPDRIQAIS 71 (82)
Q Consensus 19 ki~~~~~~~-~~~~i~~dGGI-~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~ 71 (82)
.++++++.. .++||.+.||| +++.+.++++.|+|.|.+|+++...+|+...+.
T Consensus 273 ~~~~ik~~~~~~iPVi~~Ggi~t~e~ae~~l~~gaD~V~~gR~liadPdl~~k~~ 327 (353)
T cd04735 273 IMELVKERIAGRLPLIAVGSINTPDDALEALETGADLVAIGRGLLVDPDWVEKIK 327 (353)
T ss_pred HHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcCCChHHHhHHHHhCccHHHHHH
Confidence 344455443 36899999999 799999999999999999999988888766554
No 190
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=96.56 E-value=0.0082 Score=41.27 Aligned_cols=53 Identities=11% Similarity=0.209 Sum_probs=40.9
Q ss_pred hHHHHHHHHHhCCCCcEEEEcCCCc-ccHHHHHHc-----C-CCEEEEeccccCCC-CHHHH
Q psy11601 16 MMPKVKWLRENYPTLNIEVDGGVGP-NTIDECAKA-----G-ANWIVSGTAVINCP-DRIQA 69 (82)
Q Consensus 16 ~~~ki~~~~~~~~~~~i~~dGGI~~-~ni~~~~~~-----G-ad~vv~gs~i~~~~-d~~~~ 69 (82)
.++.++++++.. ++|+.+.||++- +.+..+... | ++++++|++++... ++.+.
T Consensus 176 d~el~~~l~~~~-~~pviasGGv~s~~Dl~~l~~~~~~~~g~v~gvivg~Al~~g~i~~~e~ 236 (241)
T PRK14114 176 DFSLTRKIAIEA-EVKVFAAGGISSENSLKTAQRVHRETNGLLKGVIVGRAFLEGILTVEVM 236 (241)
T ss_pred CHHHHHHHHHHC-CCCEEEECCCCCHHHHHHHHhcccccCCcEEEEEEehHHHCCCCCHHHH
Confidence 455666766663 689999999986 899999886 6 99999999998643 44443
No 191
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=96.55 E-value=0.0081 Score=40.21 Aligned_cols=47 Identities=17% Similarity=0.281 Sum_probs=40.1
Q ss_pred hHHHHHHHHHhCCCCcEEEEcCCCc-ccHHHHHHcC-CCEEEEeccccCC
Q psy11601 16 MMPKVKWLRENYPTLNIEVDGGVGP-NTIDECAKAG-ANWIVSGTAVINC 63 (82)
Q Consensus 16 ~~~ki~~~~~~~~~~~i~~dGGI~~-~ni~~~~~~G-ad~vv~gs~i~~~ 63 (82)
.++.++++++.. ++|+.+-|||+- +.+.++.+.| ++++++|++++..
T Consensus 178 d~~~i~~l~~~~-~ipvia~GGi~~~~di~~~~~~g~~~gv~vg~a~~~~ 226 (233)
T PRK00748 178 NVEATRELAAAV-PIPVIASGGVSSLDDIKALKGLGAVEGVIVGRALYEG 226 (233)
T ss_pred CHHHHHHHHHhC-CCCEEEeCCCCCHHHHHHHHHcCCccEEEEEHHHHcC
Confidence 577788888775 589999999976 8999999998 9999999998753
No 192
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=96.52 E-value=0.0049 Score=39.56 Aligned_cols=54 Identities=22% Similarity=0.262 Sum_probs=41.2
Q ss_pred CCCCCCCCCCcc------hHHHHHHHHHhCC-CCcEEEEcCCC-cccHHHHHHcCCCEEEEe
Q psy11601 4 EPGFGGQKFMQD------MMPKVKWLRENYP-TLNIEVDGGVG-PNTIDECAKAGANWIVSG 57 (82)
Q Consensus 4 ~pG~~gq~~~~~------~~~ki~~~~~~~~-~~~i~~dGGI~-~~ni~~~~~~Gad~vv~g 57 (82)
+||..+=+.... .++.++++++..+ ++++.+.||++ ++++.++...|++++++|
T Consensus 140 ~~g~~~iK~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~gg~~~~~~~~~~~~~Ga~g~~~g 201 (201)
T cd00945 140 EAGADFIKTSTGFGGGGATVEDVKLMKEAVGGRVGVKAAGGIKTLEDALAAIEAGADGIGTS 201 (201)
T ss_pred HhCCCEEEeCCCCCCCCCCHHHHHHHHHhcccCCcEEEECCCCCHHHHHHHHHhccceeecC
Confidence 455555444443 6777888777654 67999999999 888999999999999875
No 193
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=96.52 E-value=0.012 Score=40.70 Aligned_cols=57 Identities=21% Similarity=0.313 Sum_probs=43.6
Q ss_pred HHHHHHHHHhCCCCcEEEEcCCC-cccHHHHHHc-CCCEEEEeccccCCC-CHHHHHHHHH
Q psy11601 17 MPKVKWLRENYPTLNIEVDGGVG-PNTIDECAKA-GANWIVSGTAVINCP-DRIQAISTLK 74 (82)
Q Consensus 17 ~~ki~~~~~~~~~~~i~~dGGI~-~~ni~~~~~~-Gad~vv~gs~i~~~~-d~~~~~~~l~ 74 (82)
++-.+++.+.. ++|+.+.|||+ .+.+..+... |+.++++|++++... ++.++++-++
T Consensus 180 ~~l~~~l~~~~-~ipviaSGGv~s~~Di~~l~~~~G~~GvIvG~ALy~g~~~l~ea~~~~~ 239 (241)
T COG0106 180 VDLVKELAEAV-DIPVIASGGVSSLDDIKALKELSGVEGVIVGRALYEGKFTLEEALACVR 239 (241)
T ss_pred HHHHHHHHHHh-CcCEEEecCcCCHHHHHHHHhcCCCcEEEEehHHhcCCCCHHHHHHHHh
Confidence 34455666655 68999999995 6889999999 899999999998743 6666665443
No 194
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=96.51 E-value=0.0057 Score=43.94 Aligned_cols=46 Identities=20% Similarity=0.415 Sum_probs=37.9
Q ss_pred hHHHHHHHHHhCCCCcEEEEcCCC-cccHHHHHHcCCCEEEEeccccC
Q psy11601 16 MMPKVKWLRENYPTLNIEVDGGVG-PNTIDECAKAGANWIVSGTAVIN 62 (82)
Q Consensus 16 ~~~ki~~~~~~~~~~~i~~dGGI~-~~ni~~~~~~Gad~vv~gs~i~~ 62 (82)
.+.-++++++.. ++||.++|||. ...+...+..|||.+.+|+++.+
T Consensus 189 ~l~ai~~~~~~~-~ipVIAdGGI~~~~Di~KaLa~GA~aV~vG~~~~~ 235 (326)
T PRK05458 189 QLAALRWCAKAA-RKPIIADGGIRTHGDIAKSIRFGATMVMIGSLFAG 235 (326)
T ss_pred HHHHHHHHHHHc-CCCEEEeCCCCCHHHHHHHHHhCCCEEEechhhcC
Confidence 455677776654 68999999995 56788999999999999999885
No 195
>KOG0538|consensus
Probab=96.51 E-value=0.022 Score=41.01 Aligned_cols=75 Identities=15% Similarity=0.199 Sum_probs=55.6
Q ss_pred CCCCCCCCCCcchHHHHHHHHHh-CCCCcEEEEcCCCccc-HHHHHHcCCCEEEEecc-ccC-----CCCHHHHHHHHHH
Q psy11601 4 EPGFGGQKFMQDMMPKVKWLREN-YPTLNIEVDGGVGPNT-IDECAKAGANWIVSGTA-VIN-----CPDRIQAISTLKS 75 (82)
Q Consensus 4 ~pG~~gq~~~~~~~~ki~~~~~~-~~~~~i~~dGGI~~~n-i~~~~~~Gad~vv~gs~-i~~-----~~d~~~~~~~l~~ 75 (82)
|.|-..+.+.|..++-+.++.+. ..++|+..|||++..| +-..++.||.++-+|+. +|+ .+..++.++-|++
T Consensus 252 NHGgRQlD~vpAtI~~L~Evv~aV~~ri~V~lDGGVR~G~DVlKALALGAk~VfiGRP~v~gLA~~Ge~GV~~vl~iL~~ 331 (363)
T KOG0538|consen 252 NHGGRQLDYVPATIEALPEVVKAVEGRIPVFLDGGVRRGTDVLKALALGAKGVFIGRPIVWGLAAKGEAGVKKVLDILRD 331 (363)
T ss_pred CCCccccCcccchHHHHHHHHHHhcCceEEEEecCcccchHHHHHHhcccceEEecCchheeeccccchhHHHHHHHHHH
Confidence 56777788899999999996653 4579999999998754 55667899999999988 455 2345555555555
Q ss_pred HHH
Q psy11601 76 SVQ 78 (82)
Q Consensus 76 ~~~ 78 (82)
.++
T Consensus 332 efe 334 (363)
T KOG0538|consen 332 EFE 334 (363)
T ss_pred HHH
Confidence 443
No 196
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=96.50 E-value=0.0061 Score=41.61 Aligned_cols=45 Identities=18% Similarity=0.209 Sum_probs=37.8
Q ss_pred HHHHHHHHHhCCCCcEEEEcCCCc-ccHHHHHHcCCCEEEEeccccC
Q psy11601 17 MPKVKWLRENYPTLNIEVDGGVGP-NTIDECAKAGANWIVSGTAVIN 62 (82)
Q Consensus 17 ~~ki~~~~~~~~~~~i~~dGGI~~-~ni~~~~~~Gad~vv~gs~i~~ 62 (82)
++-++++++.. ++|+.+-||++- +.+..+.+.|++.+++|++++.
T Consensus 181 ~~li~~l~~~~-~ipvi~~GGi~s~edi~~l~~~G~~~vivG~a~~~ 226 (234)
T PRK13587 181 FELTGQLVKAT-TIPVIASGGIRHQQDIQRLASLNVHAAIIGKAAHQ 226 (234)
T ss_pred HHHHHHHHHhC-CCCEEEeCCCCCHHHHHHHHHcCCCEEEEhHHHHh
Confidence 45566666653 689999999976 7999999999999999999986
No 197
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=96.50 E-value=0.006 Score=43.77 Aligned_cols=55 Identities=16% Similarity=0.242 Sum_probs=44.0
Q ss_pred HHHHHHHHHhCCCCcEEEEcCC-CcccHHHHHHcC-CCEEEEeccccCCCCHHHHHHH
Q psy11601 17 MPKVKWLRENYPTLNIEVDGGV-GPNTIDECAKAG-ANWIVSGTAVINCPDRIQAIST 72 (82)
Q Consensus 17 ~~ki~~~~~~~~~~~i~~dGGI-~~~ni~~~~~~G-ad~vv~gs~i~~~~d~~~~~~~ 72 (82)
++-.+++++.. ++||.+.|+| +++.+.++++.| +|.|.+|+.+...+++...+.+
T Consensus 264 ~~~~~~ik~~~-~ipVi~~G~i~~~~~a~~~l~~g~~D~V~~gR~~iadP~~~~k~~~ 320 (337)
T PRK13523 264 VPFAEHIREHA-NIATGAVGLITSGAQAEEILQNNRADLIFIGRELLRNPYFPRIAAK 320 (337)
T ss_pred HHHHHHHHhhc-CCcEEEeCCCCCHHHHHHHHHcCCCChHHhhHHHHhCccHHHHHHH
Confidence 34455666664 5899999998 688899999987 9999999999988887655543
No 198
>PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related. These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A ....
Probab=96.44 E-value=0.012 Score=42.65 Aligned_cols=56 Identities=16% Similarity=0.217 Sum_probs=41.7
Q ss_pred CCCCCCCCcchHHHHHHHHHh-CCCCcEEEEcCCCccc-HHHHHHcCCCEEEEecccc
Q psy11601 6 GFGGQKFMQDMMPKVKWLREN-YPTLNIEVDGGVGPNT-IDECAKAGANWIVSGTAVI 61 (82)
Q Consensus 6 G~~gq~~~~~~~~ki~~~~~~-~~~~~i~~dGGI~~~n-i~~~~~~Gad~vv~gs~i~ 61 (82)
|-..-.|.+..++-|.++++. .++++|.+||||+-.. +-..+..||+.+.+|+.++
T Consensus 256 GGr~~d~~~~~~~~L~~i~~~~~~~~~i~~dgGir~g~Dv~kalaLGA~~v~igr~~l 313 (356)
T PF01070_consen 256 GGRQLDWGPPTIDALPEIRAAVGDDIPIIADGGIRRGLDVAKALALGADAVGIGRPFL 313 (356)
T ss_dssp TGTSSTTS-BHHHHHHHHHHHHTTSSEEEEESS--SHHHHHHHHHTT-SEEEESHHHH
T ss_pred CcccCccccccccccHHHHhhhcCCeeEEEeCCCCCHHHHHHHHHcCCCeEEEccHHH
Confidence 334456778889999998874 3479999999998765 8888899999999998854
No 199
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=96.42 E-value=0.0085 Score=40.58 Aligned_cols=46 Identities=15% Similarity=0.177 Sum_probs=38.6
Q ss_pred hHHHHHHHHHhCCCCcEEEEcCCC-cccHHHHHHcCCCEEEEeccccC
Q psy11601 16 MMPKVKWLRENYPTLNIEVDGGVG-PNTIDECAKAGANWIVSGTAVIN 62 (82)
Q Consensus 16 ~~~ki~~~~~~~~~~~i~~dGGI~-~~ni~~~~~~Gad~vv~gs~i~~ 62 (82)
.++-++++++.. ++|+.+.|||+ .+.+..+...|++.+++|++++.
T Consensus 172 d~eli~~i~~~~-~~pvia~GGi~s~ed~~~l~~~Ga~~vivgsal~~ 218 (221)
T TIGR00734 172 NLELLTKTLELS-EHPVMLGGGISGVEDLELLKEMGVSAVLVATAVHK 218 (221)
T ss_pred CHHHHHHHHhhC-CCCEEEeCCCCCHHHHHHHHHCCCCEEEEhHHhhC
Confidence 467777777764 68999999996 56888999999999999999874
No 200
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=96.41 E-value=0.016 Score=39.75 Aligned_cols=51 Identities=16% Similarity=0.145 Sum_probs=40.4
Q ss_pred hHHHHHHHHHhCCCCcEEEEcCCCc-ccHHHHHHcC-CCEEEEeccccCCC-CHH
Q psy11601 16 MMPKVKWLRENYPTLNIEVDGGVGP-NTIDECAKAG-ANWIVSGTAVINCP-DRI 67 (82)
Q Consensus 16 ~~~ki~~~~~~~~~~~i~~dGGI~~-~ni~~~~~~G-ad~vv~gs~i~~~~-d~~ 67 (82)
.++-++++++.. ++|+.+.|||+- +.+.++...| +|++++|++++... ++.
T Consensus 187 ~~~~~~~i~~~~-~ipvia~GGi~s~~di~~~~~~g~~dgv~~g~a~~~~~~~~~ 240 (254)
T TIGR00735 187 DLELTKAVSEAV-KIPVIASGGAGKPEHFYEAFTKGKADAALAASVFHYREITIG 240 (254)
T ss_pred CHHHHHHHHHhC-CCCEEEeCCCCCHHHHHHHHHcCCcceeeEhHHHhCCCCCHH
Confidence 356667777764 689999999976 7899999988 99999999988643 444
No 201
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=96.38 E-value=0.0091 Score=43.18 Aligned_cols=50 Identities=16% Similarity=0.213 Sum_probs=42.2
Q ss_pred HHHHHhCCCCcEEEEcCCCcccHHHHHHcC-CCEEEEeccccCCCCHHHHHH
Q psy11601 21 KWLRENYPTLNIEVDGGVGPNTIDECAKAG-ANWIVSGTAVINCPDRIQAIS 71 (82)
Q Consensus 21 ~~~~~~~~~~~i~~dGGI~~~ni~~~~~~G-ad~vv~gs~i~~~~d~~~~~~ 71 (82)
+++++.. +.||.+.|+++++.+.++++.| +|.|.+|+++...+|+..+++
T Consensus 285 ~~ik~~~-~~pv~~~G~~~~~~ae~~i~~G~~D~V~~gR~~iadPd~~~k~~ 335 (362)
T PRK10605 285 EKVRARF-HGVIIGAGAYTAEKAETLIGKGLIDAVAFGRDYIANPDLVARLQ 335 (362)
T ss_pred HHHHHHC-CCCEEEeCCCCHHHHHHHHHcCCCCEEEECHHhhhCccHHHHHh
Confidence 4466655 4789999999999999999998 999999999998888766554
No 202
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=96.37 E-value=0.017 Score=39.39 Aligned_cols=58 Identities=14% Similarity=0.172 Sum_probs=42.7
Q ss_pred CcchHHHHHHHHHhCCCCcEEEEcCCCc-ccHHHHH---HcCCCEEEEeccccC-CCCHHHHHH
Q psy11601 13 MQDMMPKVKWLRENYPTLNIEVDGGVGP-NTIDECA---KAGANWIVSGTAVIN-CPDRIQAIS 71 (82)
Q Consensus 13 ~~~~~~ki~~~~~~~~~~~i~~dGGI~~-~ni~~~~---~~Gad~vv~gs~i~~-~~d~~~~~~ 71 (82)
....++.++++++.. ++|+.+-|||+- +.+..+. ..|++++++|++++. .-++.++.+
T Consensus 175 ~G~d~~~i~~i~~~~-~ipviasGGi~s~~D~~~l~~~~~~GvdgV~igra~~~g~~~~~~~~~ 237 (241)
T PRK14024 175 TGPNLELLREVCART-DAPVVASGGVSSLDDLRALAELVPLGVEGAIVGKALYAGAFTLPEALA 237 (241)
T ss_pred cCCCHHHHHHHHhhC-CCCEEEeCCCCCHHHHHHHhhhccCCccEEEEeHHHHcCCCCHHHHHH
Confidence 334678888888774 699999999974 6777664 359999999999775 445555443
No 203
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=96.28 E-value=0.011 Score=42.22 Aligned_cols=35 Identities=23% Similarity=0.408 Sum_probs=31.6
Q ss_pred CCcEEEEcCCC-cccHHHHHHcCCCEEEEeccccCC
Q psy11601 29 TLNIEVDGGVG-PNTIDECAKAGANWIVSGTAVINC 63 (82)
Q Consensus 29 ~~~i~~dGGI~-~~ni~~~~~~Gad~vv~gs~i~~~ 63 (82)
++||.++|||. ...+...+++||+.+.+|+.+...
T Consensus 197 ~vpVIA~GGI~~~~di~kAla~GA~~VmiGt~fa~t 232 (325)
T cd00381 197 GVPVIADGGIRTSGDIVKALAAGADAVMLGSLLAGT 232 (325)
T ss_pred CCcEEecCCCCCHHHHHHHHHcCCCEEEecchhccc
Confidence 58999999997 599999999999999999998763
No 204
>COG0434 SgcQ Predicted TIM-barrel enzyme [General function prediction only]
Probab=96.27 E-value=0.0098 Score=41.37 Aligned_cols=63 Identities=21% Similarity=0.337 Sum_probs=48.0
Q ss_pred cchHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCCC------CHHHHHHHHHHHHHH
Q psy11601 14 QDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINCP------DRIQAISTLKSSVQK 79 (82)
Q Consensus 14 ~~~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~~------d~~~~~~~l~~~~~~ 79 (82)
|-.++.|+.+++..+ .|+.+=-|++++|+.++++. +|++++||.+=... |+ +.+++|-+..++
T Consensus 191 ~~d~~el~~a~~~~~-~pvlvGSGv~~eN~~~~l~~-adG~IvgT~lK~~G~~~n~VD~-~Rv~~~v~~a~~ 259 (263)
T COG0434 191 PPDLEELKLAKEAVD-TPVLVGSGVNPENIEELLKI-ADGVIVGTSLKKGGVTWNPVDL-ERVRRFVEAARR 259 (263)
T ss_pred CCCHHHHHHHHhccC-CCEEEecCCCHHHHHHHHHH-cCceEEEEEEccCCEecCccCH-HHHHHHHHHHHH
Confidence 456777888888764 99999999999999999998 99999999986522 33 345555544443
No 205
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=96.23 E-value=0.019 Score=45.04 Aligned_cols=59 Identities=24% Similarity=0.337 Sum_probs=47.3
Q ss_pred HHHHHHHHHhCC-CCcEEEEcCCC-cccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHH
Q psy11601 17 MPKVKWLRENYP-TLNIEVDGGVG-PNTIDECAKAGANWIVSGTAVINCPDRIQAISTLKS 75 (82)
Q Consensus 17 ~~ki~~~~~~~~-~~~i~~dGGI~-~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~ 75 (82)
++.-.++....| ...++.-+||+ ++++..+..+|+|.|.+|+++..++||.+.+++|..
T Consensus 198 ~~~t~~L~~~ip~~~~~VsESGI~~~~d~~~l~~~G~davLIGeslm~~~dp~~~~~~l~~ 258 (695)
T PRK13802 198 VNKYNELAADLPDDVIKVAESGVFGAVEVEDYARAGADAVLVGEGVATADDHELAVERLVK 258 (695)
T ss_pred HHHHHHHHhhCCCCcEEEEcCCCCCHHHHHHHHHCCCCEEEECHHhhCCCCHHHHHHHHHh
Confidence 444455555554 35567778887 699999999999999999999999999999988864
No 206
>KOG2335|consensus
Probab=96.19 E-value=0.011 Score=42.92 Aligned_cols=53 Identities=25% Similarity=0.434 Sum_probs=45.1
Q ss_pred CCCCCcchHHHHHHHHHhCCCCcEEEEcCCC-cccHHHHHH-cCCCEEEEecccc
Q psy11601 9 GQKFMQDMMPKVKWLRENYPTLNIEVDGGVG-PNTIDECAK-AGANWIVSGTAVI 61 (82)
Q Consensus 9 gq~~~~~~~~ki~~~~~~~~~~~i~~dGGI~-~~ni~~~~~-~Gad~vv~gs~i~ 61 (82)
|.+-.|..++.|+.+++..+.+|+.+-|+|. .+.+..+.+ .|+|+|.++.++.
T Consensus 183 g~~~~pad~~~i~~v~~~~~~ipviaNGnI~~~~d~~~~~~~tG~dGVM~arglL 237 (358)
T KOG2335|consen 183 GLKTGPADWEAIKAVRENVPDIPVIANGNILSLEDVERCLKYTGADGVMSARGLL 237 (358)
T ss_pred CCCCCCcCHHHHHHHHHhCcCCcEEeeCCcCcHHHHHHHHHHhCCceEEecchhh
Confidence 4447788999999999998779999999997 677777777 9999999997654
No 207
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=96.19 E-value=0.019 Score=39.81 Aligned_cols=49 Identities=24% Similarity=0.464 Sum_probs=37.5
Q ss_pred hHHHHHHHHHhCCCCcEEEEcCCC-cccHHHHHHcCCCEEEEeccccCCCC
Q psy11601 16 MMPKVKWLRENYPTLNIEVDGGVG-PNTIDECAKAGANWIVSGTAVINCPD 65 (82)
Q Consensus 16 ~~~ki~~~~~~~~~~~i~~dGGI~-~~ni~~~~~~Gad~vv~gs~i~~~~d 65 (82)
-.+-|+++.+.. +.|+.+=|||+ .+.+..++++|++.+++||.-+..++
T Consensus 63 n~~~i~~i~~~~-~~~vQvGGGIRs~~~v~~ll~~G~~rViiGt~av~~p~ 112 (241)
T COG0106 63 NLEAIKEILEAT-DVPVQVGGGIRSLEDVEALLDAGVARVIIGTAAVKNPD 112 (241)
T ss_pred cHHHHHHHHHhC-CCCEEeeCCcCCHHHHHHHHHCCCCEEEEecceecCHH
Confidence 344556666654 58999999997 56678999999999999988765444
No 208
>PLN02535 glycolate oxidase
Probab=96.17 E-value=0.034 Score=40.56 Aligned_cols=50 Identities=18% Similarity=0.280 Sum_probs=39.8
Q ss_pred CCcchHHHHHHHHHh-CCCCcEEEEcCCC-cccHHHHHHcCCCEEEEecccc
Q psy11601 12 FMQDMMPKVKWLREN-YPTLNIEVDGGVG-PNTIDECAKAGANWIVSGTAVI 61 (82)
Q Consensus 12 ~~~~~~~ki~~~~~~-~~~~~i~~dGGI~-~~ni~~~~~~Gad~vv~gs~i~ 61 (82)
+.+..++-|.++++. ..++||.+||||. ...+...+..||+.+.+|+.++
T Consensus 260 ~~~~t~~~L~ev~~av~~~ipVi~dGGIr~g~Dv~KALalGA~aV~vGr~~l 311 (364)
T PLN02535 260 YSPATISVLEEVVQAVGGRVPVLLDGGVRRGTDVFKALALGAQAVLVGRPVI 311 (364)
T ss_pred CChHHHHHHHHHHHHHhcCCCEEeeCCCCCHHHHHHHHHcCCCEEEECHHHH
Confidence 456667778887654 3469999999997 4567888999999999998865
No 209
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=96.16 E-value=0.027 Score=39.51 Aligned_cols=55 Identities=25% Similarity=0.418 Sum_probs=42.0
Q ss_pred CCCCCCCC--cchHHHHHHHHHhCCCCcEEEEcCC-CcccHHHHHHcCCCEEEEeccccC
Q psy11601 6 GFGGQKFM--QDMMPKVKWLRENYPTLNIEVDGGV-GPNTIDECAKAGANWIVSGTAVIN 62 (82)
Q Consensus 6 G~~gq~~~--~~~~~ki~~~~~~~~~~~i~~dGGI-~~~ni~~~~~~Gad~vv~gs~i~~ 62 (82)
|..|.+-. ...-+.++++|+.. +.|+++==|| +++.++++.+. ||++|+||++.+
T Consensus 181 GvTG~~~~~~~~~~~~v~~vr~~~-~~Pv~vGFGIs~~e~~~~v~~~-ADGVIVGSAiV~ 238 (265)
T COG0159 181 GVTGARNPVSADVKELVKRVRKYT-DVPVLVGFGISSPEQAAQVAEA-ADGVIVGSAIVK 238 (265)
T ss_pred cccCCCcccchhHHHHHHHHHHhc-CCCeEEecCcCCHHHHHHHHHh-CCeEEEcHHHHH
Confidence 44554443 22566688888886 6787777676 57899999999 999999999886
No 210
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=96.16 E-value=0.016 Score=42.03 Aligned_cols=54 Identities=20% Similarity=0.277 Sum_probs=43.2
Q ss_pred HHHHHHHHHhCCCCcEEEEcCC-CcccHHHHHHcC-CCEEEEeccccCCCCHHHHHH
Q psy11601 17 MPKVKWLRENYPTLNIEVDGGV-GPNTIDECAKAG-ANWIVSGTAVINCPDRIQAIS 71 (82)
Q Consensus 17 ~~ki~~~~~~~~~~~i~~dGGI-~~~ni~~~~~~G-ad~vv~gs~i~~~~d~~~~~~ 71 (82)
++-.+++++.. ++|+.+.|++ +++.+.++++.| +|.|.+|+.+...+|+...++
T Consensus 278 ~~~~~~ik~~~-~~pvi~~G~i~~~~~~~~~l~~g~~D~V~~gR~~ladP~l~~k~~ 333 (370)
T cd02929 278 EPYIKFVKQVT-SKPVVGVGRFTSPDKMVEVVKSGILDLIGAARPSIADPFLPKKIR 333 (370)
T ss_pred HHHHHHHHHHC-CCCEEEeCCCCCHHHHHHHHHcCCCCeeeechHhhhCchHHHHHH
Confidence 34445566664 6899999999 578899999987 999999999998888766554
No 211
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=96.15 E-value=0.018 Score=39.24 Aligned_cols=37 Identities=19% Similarity=0.286 Sum_probs=32.8
Q ss_pred CCCcEEEEcCCCc-ccHHHHHHcCCCEEEEeccccCCC
Q psy11601 28 PTLNIEVDGGVGP-NTIDECAKAGANWIVSGTAVINCP 64 (82)
Q Consensus 28 ~~~~i~~dGGI~~-~ni~~~~~~Gad~vv~gs~i~~~~ 64 (82)
++.|+.+.||++- +.+.++...|++++++|++++...
T Consensus 181 ~~~pviasGGv~~~~Dl~~l~~~g~~gvivg~al~~g~ 218 (228)
T PRK04128 181 GDEEFIYAGGVSSAEDVKKLAEIGFSGVIIGKALYEGR 218 (228)
T ss_pred CCCCEEEECCCCCHHHHHHHHHCCCCEEEEEhhhhcCC
Confidence 4689999999976 899999999999999999998643
No 212
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=96.14 E-value=0.015 Score=43.90 Aligned_cols=48 Identities=19% Similarity=0.283 Sum_probs=39.6
Q ss_pred chHHHHHHHHHhCCCCcEEEEcCCC-cccHHHHHHcCCCEEEEeccccCC
Q psy11601 15 DMMPKVKWLRENYPTLNIEVDGGVG-PNTIDECAKAGANWIVSGTAVINC 63 (82)
Q Consensus 15 ~~~~ki~~~~~~~~~~~i~~dGGI~-~~ni~~~~~~Gad~vv~gs~i~~~ 63 (82)
..+..+.++.+.. ++||.+||||. ...+...+++||+.+++||++...
T Consensus 338 ~~i~~~~~~~~~~-~vpVIadGGI~~~~di~kAla~GA~~V~vGs~~~~t 386 (505)
T PLN02274 338 TAVYKVASIAAQH-GVPVIADGGISNSGHIVKALTLGASTVMMGSFLAGT 386 (505)
T ss_pred cHHHHHHHHHHhc-CCeEEEeCCCCCHHHHHHHHHcCCCEEEEchhhccc
Confidence 4666677777654 68999999996 567888999999999999999873
No 213
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=96.14 E-value=0.032 Score=40.92 Aligned_cols=50 Identities=18% Similarity=0.162 Sum_probs=39.4
Q ss_pred CCcchHHHHHHHHHhC-CCCcEEEEcCCCc-ccHHHHHHcCCCEEEEecccc
Q psy11601 12 FMQDMMPKVKWLRENY-PTLNIEVDGGVGP-NTIDECAKAGANWIVSGTAVI 61 (82)
Q Consensus 12 ~~~~~~~ki~~~~~~~-~~~~i~~dGGI~~-~ni~~~~~~Gad~vv~gs~i~ 61 (82)
..+..++-|.++++.. .++||.+||||.. ..+...+..|||.+.+|+.+.
T Consensus 290 ~~~~t~~~L~ei~~~~~~~~~vi~dGGIr~G~Dv~KALaLGA~~v~iGr~~l 341 (383)
T cd03332 290 GSIAALDALPEIVEAVGDRLTVLFDSGVRTGADIMKALALGAKAVLIGRPYA 341 (383)
T ss_pred CCcCHHHHHHHHHHHhcCCCeEEEeCCcCcHHHHHHHHHcCCCEEEEcHHHH
Confidence 3556777788877653 3699999999975 457788899999999998854
No 214
>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase. This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.
Probab=96.12 E-value=0.021 Score=39.27 Aligned_cols=53 Identities=9% Similarity=0.088 Sum_probs=38.9
Q ss_pred hHHHHHHHHHhCCCCcEEEEcCCCc-ccHHHHH---HcCCCEEEEeccccCCC-CHHHH
Q psy11601 16 MMPKVKWLRENYPTLNIEVDGGVGP-NTIDECA---KAGANWIVSGTAVINCP-DRIQA 69 (82)
Q Consensus 16 ~~~ki~~~~~~~~~~~i~~dGGI~~-~ni~~~~---~~Gad~vv~gs~i~~~~-d~~~~ 69 (82)
.++-++++++. .+.|+.+.||++- +.+..+. ..|++++++|++++... +++++
T Consensus 181 d~~l~~~l~~~-~~~pviasGGv~s~eDl~~l~~l~~~Gv~gvivg~Al~~g~i~~~~~ 238 (243)
T TIGR01919 181 NELLLEVVAAR-TDAIVAASGGSSLLDDLRAIKYLDEGGVSVAIGGKLLYARFFTLEAA 238 (243)
T ss_pred CHHHHHHHHhh-CCCCEEEECCcCCHHHHHHHHhhccCCeeEEEEhHHHHcCCCCHHHH
Confidence 34455666665 3689999999986 6777765 45999999999998643 55443
No 215
>COG0284 PyrF Orotidine-5'-phosphate decarboxylase [Nucleotide transport and metabolism]
Probab=96.12 E-value=0.036 Score=38.29 Aligned_cols=38 Identities=24% Similarity=0.451 Sum_probs=33.2
Q ss_pred HHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHHHHHh
Q psy11601 43 IDECAKAGANWIVSGTAVINCPDRIQAISTLKSSVQKY 80 (82)
Q Consensus 43 i~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~~~~~ 80 (82)
..+...+|+|.+|+|+.|+.++||.++++++.+.+...
T Consensus 200 ~~~A~~~Gad~ivVGR~I~~a~~p~~a~~~i~~~~~~~ 237 (240)
T COG0284 200 PGEAVRAGADYIVVGRPITQAGDPVAAARAIAREIARE 237 (240)
T ss_pred HHHHHhcCCCEEEEChhhhcCCChHHHHHHHHHHHHHh
Confidence 56777899999999999999999999999888877654
No 216
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=96.11 E-value=0.016 Score=39.66 Aligned_cols=44 Identities=20% Similarity=0.255 Sum_probs=34.8
Q ss_pred HHHHHHHHHhCCCCcEEEEcCCCc-ccHHHHHHcCCCEEEEeccccC
Q psy11601 17 MPKVKWLRENYPTLNIEVDGGVGP-NTIDECAKAGANWIVSGTAVIN 62 (82)
Q Consensus 17 ~~ki~~~~~~~~~~~i~~dGGI~~-~ni~~~~~~Gad~vv~gs~i~~ 62 (82)
++-++++++. +. ++.+.||++- +.+..+.+.|++++++|++++.
T Consensus 179 ~el~~~~~~~-~~-~viasGGv~s~~Dl~~l~~~G~~gvivg~Aly~ 223 (232)
T PRK13586 179 YNVKDYARLI-RG-LKEYAGGVSSDADLEYLKNVGFDYIIVGMAFYL 223 (232)
T ss_pred HHHHHHHHhC-CC-CEEEECCCCCHHHHHHHHHCCCCEEEEehhhhc
Confidence 3445555554 33 4788999987 8999999999999999999984
No 217
>PRK14567 triosephosphate isomerase; Provisional
Probab=96.09 E-value=0.025 Score=39.35 Aligned_cols=64 Identities=11% Similarity=0.120 Sum_probs=47.5
Q ss_pred CCCCCcchHHHHHH-HHHh--------CCCCcEEEEcCCCcccHHHHHHcC-CCEEEEeccccCCCCHHHHHHH
Q psy11601 9 GQKFMQDMMPKVKW-LREN--------YPTLNIEVDGGVGPNTIDECAKAG-ANWIVSGTAVINCPDRIQAIST 72 (82)
Q Consensus 9 gq~~~~~~~~ki~~-~~~~--------~~~~~i~~dGGI~~~ni~~~~~~G-ad~vv~gs~i~~~~d~~~~~~~ 72 (82)
|+.-.|+..+++.. +|+. .++++|.-=|+++++|+.++.+.+ +|++-+|++..+++++.+-++.
T Consensus 173 G~~as~e~i~~~~~~IR~~l~~~~~~~a~~v~IlYGGSV~~~N~~~l~~~~diDG~LVGgasL~~~~F~~Ii~~ 246 (253)
T PRK14567 173 GVVASLEQIQETHQFIRSLLAKVDERLAKNIKIVYGGSLKAENAKDILSLPDVDGGLIGGASLKAAEFNEIINQ 246 (253)
T ss_pred CCCCCHHHHHHHHHHHHHHHHhhcccccccceEEEcCcCCHHHHHHHHcCCCCCEEEeehhhhcHHHHHHHHHH
Confidence 44445566655444 3331 246899999999999999999988 9999999998877776655544
No 218
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=96.06 E-value=0.039 Score=39.37 Aligned_cols=63 Identities=16% Similarity=0.269 Sum_probs=44.1
Q ss_pred hHHHHHHHHHhCCCCcEEEEcCCC-cccHHHHHHcCCCEEEEeccccCC-----CCHHHHHHHHHHHHH
Q psy11601 16 MMPKVKWLRENYPTLNIEVDGGVG-PNTIDECAKAGANWIVSGTAVINC-----PDRIQAISTLKSSVQ 78 (82)
Q Consensus 16 ~~~ki~~~~~~~~~~~i~~dGGI~-~~ni~~~~~~Gad~vv~gs~i~~~-----~d~~~~~~~l~~~~~ 78 (82)
..+.|.++++..+++||.++|||+ ...+...+..|||.+.++++++.+ +...+.++.+.+.++
T Consensus 242 t~~~l~~~~~~~~~ipIiasGGIr~~~dv~kal~lGAd~V~i~~~~L~~~~~g~~~~~~~i~~~~~el~ 310 (326)
T cd02811 242 TAASLLEVRSALPDLPLIASGGIRNGLDIAKALALGADLVGMAGPFLKAALEGEEAVIETIEQIIEELR 310 (326)
T ss_pred HHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHhCCCEEEEcHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 456677777665579999999985 667788889999999999976531 122344555555444
No 219
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=96.06 E-value=0.042 Score=40.07 Aligned_cols=47 Identities=17% Similarity=0.201 Sum_probs=38.7
Q ss_pred cchHHHHHHHHHhCCCCcEEEEcCCCcc-cHHHHHHcCCCEEEEecccc
Q psy11601 14 QDMMPKVKWLRENYPTLNIEVDGGVGPN-TIDECAKAGANWIVSGTAVI 61 (82)
Q Consensus 14 ~~~~~ki~~~~~~~~~~~i~~dGGI~~~-ni~~~~~~Gad~vv~gs~i~ 61 (82)
+..++-+.++++.. +++|.+||||+.. .+...+..||+.+.+|+++.
T Consensus 275 ~~~~~~L~ei~~~~-~~~vi~dGGIr~g~Dv~KALaLGA~aV~iGr~~l 322 (361)
T cd04736 275 IAPIEALAEIVAAT-YKPVLIDSGIRRGSDIVKALALGANAVLLGRATL 322 (361)
T ss_pred ccHHHHHHHHHHHh-CCeEEEeCCCCCHHHHHHHHHcCCCEEEECHHHH
Confidence 45788888888765 4899999999754 67788899999999998865
No 220
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=96.05 E-value=0.032 Score=39.07 Aligned_cols=56 Identities=18% Similarity=0.197 Sum_probs=41.7
Q ss_pred hHHHHHHHHHhCCCCcEEEEcCCC-cccHHHHHHc--CCCEEEEeccc--cCCC-CHHHHHHH
Q psy11601 16 MMPKVKWLRENYPTLNIEVDGGVG-PNTIDECAKA--GANWIVSGTAV--INCP-DRIQAIST 72 (82)
Q Consensus 16 ~~~ki~~~~~~~~~~~i~~dGGI~-~~ni~~~~~~--Gad~vv~gs~i--~~~~-d~~~~~~~ 72 (82)
.++-++++++.. ++|+.+.||++ .+.+..+... |+.++++|++| |... +.++.+++
T Consensus 195 d~el~~~l~~~~-~ipVIASGGv~sleDi~~L~~~g~g~~gvIvGkAl~~y~g~~~l~ea~~~ 256 (262)
T PLN02446 195 DEELVALLGEHS-PIPVTYAGGVRSLDDLERVKVAGGGRVDVTVGSALDIFGGNLPYDDVVAW 256 (262)
T ss_pred CHHHHHHHHhhC-CCCEEEECCCCCHHHHHHHHHcCCCCEEEEEEeeHHHhCCCccHHHHHHH
Confidence 466667777763 68999999995 6888888887 57899999999 7643 45544443
No 221
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=96.04 E-value=0.0077 Score=42.59 Aligned_cols=65 Identities=15% Similarity=0.261 Sum_probs=45.2
Q ss_pred CccCCCCCCCCCC-cchHHHHHHHHHhCCCCcEEEEcCCC-cccHHHHHHc-CCCEEEEeccccCCCCH
Q psy11601 1 MTVEPGFGGQKFM-QDMMPKVKWLRENYPTLNIEVDGGVG-PNTIDECAKA-GANWIVSGTAVINCPDR 66 (82)
Q Consensus 1 m~v~pG~~gq~~~-~~~~~ki~~~~~~~~~~~i~~dGGI~-~~ni~~~~~~-Gad~vv~gs~i~~~~d~ 66 (82)
++||+-...|++. +..++.|+++++.. ++||.+=|+|. .+.+..+.+. |+|+|.+|++.+..+.+
T Consensus 155 i~vH~Rt~~q~~~~~a~w~~i~~i~~~~-~ipvi~NGdI~s~~d~~~~~~~tg~dgvMigRgal~nP~l 222 (309)
T PF01207_consen 155 ITVHGRTRKQRYKGPADWEAIAEIKEAL-PIPVIANGDIFSPEDAERMLEQTGADGVMIGRGALGNPWL 222 (309)
T ss_dssp EEEECS-TTCCCTS---HHHHHHCHHC--TSEEEEESS--SHHHHHHHCCCH-SSEEEESHHHCC-CCH
T ss_pred EEEecCchhhcCCcccchHHHHHHhhcc-cceeEEcCccCCHHHHHHHHHhcCCcEEEEchhhhhcCHH
Confidence 3688888888887 77888899998876 49999999995 5666666665 99999999887765543
No 222
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=96.04 E-value=0.019 Score=41.72 Aligned_cols=53 Identities=26% Similarity=0.438 Sum_probs=42.9
Q ss_pred HHHHHHHHhCCCCcEEEEcCC-CcccHHHHHHcC-CCEEEEeccccCCCCHHHHHH
Q psy11601 18 PKVKWLRENYPTLNIEVDGGV-GPNTIDECAKAG-ANWIVSGTAVINCPDRIQAIS 71 (82)
Q Consensus 18 ~ki~~~~~~~~~~~i~~dGGI-~~~ni~~~~~~G-ad~vv~gs~i~~~~d~~~~~~ 71 (82)
.-.+++++.. ++|+.+.||| +++.+.++++.| +|.|.+|+++...+|+...+.
T Consensus 295 ~~~~~ik~~~-~~pvi~~G~i~~~~~~~~~l~~g~~D~V~~gR~~ladP~l~~k~~ 349 (382)
T cd02931 295 PYCKALKEVV-DVPVIMAGRMEDPELASEAINEGIADMISLGRPLLADPDVVNKIR 349 (382)
T ss_pred HHHHHHHHHC-CCCEEEeCCCCCHHHHHHHHHcCCCCeeeechHhHhCccHHHHHH
Confidence 3455667665 6899999999 788899999876 999999999998888765553
No 223
>cd00311 TIM Triosephosphate isomerase (TIM) is a glycolytic enzyme that catalyzes the interconversion of dihydroxyacetone phosphate and D-glyceraldehyde-3-phosphate. The reaction is very efficient and requires neither cofactors nor metal ions. TIM, usually homodimeric, but in some organisms tetrameric, is ubiqitous and conserved in function across eukaryotes, bacteria and archaea.
Probab=96.03 E-value=0.011 Score=40.71 Aligned_cols=39 Identities=18% Similarity=0.244 Sum_probs=34.4
Q ss_pred CCCcEEEEcCCCcccHHHHHHcC-CCEEEEeccccCCCCH
Q psy11601 28 PTLNIEVDGGVGPNTIDECAKAG-ANWIVSGTAVINCPDR 66 (82)
Q Consensus 28 ~~~~i~~dGGI~~~ni~~~~~~G-ad~vv~gs~i~~~~d~ 66 (82)
++++|.-=|+|+++|+.++...+ +|++-+|++..++++.
T Consensus 198 ~~~~IlYGGSV~~~N~~~l~~~~~vDG~LVG~Asl~~~~f 237 (242)
T cd00311 198 EKVRILYGGSVNPENAAELLAQPDIDGVLVGGASLKAESF 237 (242)
T ss_pred CceeEEECCCCCHHHHHHHhcCCCCCEEEeehHhhCHHHH
Confidence 36899999999999999999999 9999999998865443
No 224
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=95.99 E-value=0.023 Score=43.28 Aligned_cols=48 Identities=23% Similarity=0.388 Sum_probs=40.9
Q ss_pred chHHHHHHHHHhCCCCcEEEEcCCCc------------ccHHHHHHcCCCEEEEeccccCC
Q psy11601 15 DMMPKVKWLRENYPTLNIEVDGGVGP------------NTIDECAKAGANWIVSGTAVINC 63 (82)
Q Consensus 15 ~~~~ki~~~~~~~~~~~i~~dGGI~~------------~ni~~~~~~Gad~vv~gs~i~~~ 63 (82)
..++-|+++.+.. .+|+.+=|||+- +.++.++.+|||-++++|+.+..
T Consensus 301 ~~~~~i~~i~~~~-~ip~~vGGGIr~~~d~~~~~~~~~e~~~~~l~~GadkV~i~s~Av~~ 360 (538)
T PLN02617 301 PMLEVLRRASENV-FVPLTVGGGIRDFTDANGRYYSSLEVASEYFRSGADKISIGSDAVYA 360 (538)
T ss_pred hHHHHHHHHHhhC-CCCEEEcCCccccccccccccchHHHHHHHHHcCCCEEEEChHHHhC
Confidence 3577788877765 589999999998 78999999999999999987764
No 225
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=95.94 E-value=0.022 Score=40.82 Aligned_cols=54 Identities=19% Similarity=0.302 Sum_probs=43.3
Q ss_pred HHHHHHHHHhCCCCcEEEEcCC-CcccHHHHHHcC-CCEEEEeccccCCCCHHHHHH
Q psy11601 17 MPKVKWLRENYPTLNIEVDGGV-GPNTIDECAKAG-ANWIVSGTAVINCPDRIQAIS 71 (82)
Q Consensus 17 ~~ki~~~~~~~~~~~i~~dGGI-~~~ni~~~~~~G-ad~vv~gs~i~~~~d~~~~~~ 71 (82)
++-++++++.. ++||.+.|+| +++.+..+++.| +|.|.+|+.+...+++...+.
T Consensus 274 ~~~~~~ik~~~-~ipvi~~G~i~~~~~~~~~l~~~~~D~V~~gR~~ladP~l~~k~~ 329 (343)
T cd04734 274 LPLAARIKQAV-DLPVFHAGRIRDPAEAEQALAAGHADMVGMTRAHIADPHLVAKAR 329 (343)
T ss_pred HHHHHHHHHHc-CCCEEeeCCCCCHHHHHHHHHcCCCCeeeecHHhHhCccHHHHHH
Confidence 34456666665 6899999998 779999999866 999999999998888765543
No 226
>TIGR02814 pfaD_fam PfaD family protein. The protein PfaD is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. Several other members of the seed alignment for this model are found in loci presumed to act in polyketide biosyntheses per se.
Probab=95.92 E-value=0.019 Score=42.94 Aligned_cols=34 Identities=24% Similarity=0.492 Sum_probs=31.1
Q ss_pred CCcEEEEcCC-CcccHHHHHHcCCCEEEEeccccC
Q psy11601 29 TLNIEVDGGV-GPNTIDECAKAGANWIVSGTAVIN 62 (82)
Q Consensus 29 ~~~i~~dGGI-~~~ni~~~~~~Gad~vv~gs~i~~ 62 (82)
++||.+.||| +.+.+......|||.+.+||....
T Consensus 224 ~VpViAAGGI~t~~~vaAAlaLGAdgV~~GT~fla 258 (444)
T TIGR02814 224 PIRVGAAGGIGTPEAAAAAFMLGADFIVTGSVNQC 258 (444)
T ss_pred CceEEEeCCCCCHHHHHHHHHcCCcEEEeccHHHh
Confidence 5889999999 899999999999999999998654
No 227
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=95.82 E-value=0.034 Score=37.93 Aligned_cols=42 Identities=19% Similarity=0.171 Sum_probs=36.1
Q ss_pred chHHHHHHHHHhCCCCcEEEEcCC-CcccHHHHHHcCCCEEEEecc
Q psy11601 15 DMMPKVKWLRENYPTLNIEVDGGV-GPNTIDECAKAGANWIVSGTA 59 (82)
Q Consensus 15 ~~~~ki~~~~~~~~~~~i~~dGGI-~~~ni~~~~~~Gad~vv~gs~ 59 (82)
..++.|++++ .++||.+-||| +.+.+.++...|||.+.+|++
T Consensus 180 ad~~~I~~i~---~~ipVIgnGgI~s~eda~~~l~~GaD~VmiGR~ 222 (233)
T cd02911 180 ADLKKIRDIS---TELFIIGNNSVTTIESAKEMFSYGADMVSVARA 222 (233)
T ss_pred CcHHHHHHhc---CCCEEEEECCcCCHHHHHHHHHcCCCEEEEcCC
Confidence 3466677766 36899999999 889999999999999999999
No 228
>KOG3055|consensus
Probab=95.82 E-value=0.041 Score=37.49 Aligned_cols=34 Identities=18% Similarity=0.331 Sum_probs=31.7
Q ss_pred cEEEEcCCCcccHHHHHHcCCCEEEEeccccCCC
Q psy11601 31 NIEVDGGVGPNTIDECAKAGANWIVSGTAVINCP 64 (82)
Q Consensus 31 ~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~~ 64 (82)
-+.+-||||-+|.-++++.||.-+++.|.+|...
T Consensus 84 ~LQvGGGIN~~Nc~~wl~egASkVIVTSwlF~~g 117 (263)
T KOG3055|consen 84 GLQVGGGINSENCMSWLEEGASKVIVTSWLFNNG 117 (263)
T ss_pred ceeecCccChHHHHHHHHhcCceEEEEEEeccCC
Confidence 4899999999999999999999999999999743
No 229
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=95.81 E-value=0.024 Score=41.13 Aligned_cols=53 Identities=17% Similarity=0.278 Sum_probs=41.7
Q ss_pred HHHHHHHHhCCCCcEEEEcCC-------------------CcccHHHHHHcC-CCEEEEeccccCCCCHHHHHH
Q psy11601 18 PKVKWLRENYPTLNIEVDGGV-------------------GPNTIDECAKAG-ANWIVSGTAVINCPDRIQAIS 71 (82)
Q Consensus 18 ~ki~~~~~~~~~~~i~~dGGI-------------------~~~ni~~~~~~G-ad~vv~gs~i~~~~d~~~~~~ 71 (82)
.-.+++++.. ++|+.+.|+| +++.+.++++.| +|.+.+|+++...+++...++
T Consensus 270 ~~~~~~k~~~-~~pv~~~G~i~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~g~~D~V~~gR~~iadP~~~~k~~ 342 (361)
T cd04747 270 NLAGWTKKLT-GLPTITVGSVGLDGDFIGAFAGDEGASPASLDRLLERLERGEFDLVAVGRALLSDPAWVAKVR 342 (361)
T ss_pred hHHHHHHHHc-CCCEEEECCcccccccccccccccccccCCHHHHHHHHHCCCCCeehhhHHHHhCcHHHHHHH
Confidence 3344566654 5899999998 778899999876 999999999998888765543
No 230
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=95.76 E-value=0.024 Score=40.40 Aligned_cols=47 Identities=17% Similarity=0.300 Sum_probs=35.0
Q ss_pred chHHHHHHHHHhCCCCcEEEEcCC-CcccHHHHHHcCCCEEEEeccccC
Q psy11601 15 DMMPKVKWLRENYPTLNIEVDGGV-GPNTIDECAKAGANWIVSGTAVIN 62 (82)
Q Consensus 15 ~~~~ki~~~~~~~~~~~i~~dGGI-~~~ni~~~~~~Gad~vv~gs~i~~ 62 (82)
..+.-+.++++.. ++||.+.||| +.+.+...+..||+++.+|+.+..
T Consensus 177 ~~~~L~~~v~~~~-~iPViaAGGI~dg~~iaaal~lGA~gV~~GTrFl~ 224 (330)
T PF03060_consen 177 STFSLLPQVRDAV-DIPVIAAGGIADGRGIAAALALGADGVQMGTRFLA 224 (330)
T ss_dssp -HHHHHHHHHHH--SS-EEEESS--SHHHHHHHHHCT-SEEEESHHHHT
T ss_pred ceeeHHHHHhhhc-CCcEEEecCcCCHHHHHHHHHcCCCEeecCCeEEe
Confidence 3566677788776 5999999999 556799999999999999988654
No 231
>PRK05500 bifunctional orotidine 5'-phosphate decarboxylase/orotate phosphoribosyltransferase protein; Validated
Probab=95.75 E-value=0.063 Score=40.44 Aligned_cols=62 Identities=13% Similarity=0.202 Sum_probs=43.3
Q ss_pred HHHHHHhCCCCcEEEEc-CCCcccHHHHHHcCCC------EEEEeccccCCCCHHHHHHHHHHHHHHhh
Q psy11601 20 VKWLRENYPTLNIEVDG-GVGPNTIDECAKAGAN------WIVSGTAVINCPDRIQAISTLKSSVQKYL 81 (82)
Q Consensus 20 i~~~~~~~~~~~i~~dG-GI~~~ni~~~~~~Gad------~vv~gs~i~~~~d~~~~~~~l~~~~~~~~ 81 (82)
++++|+..|+.+|.+=| |---.++.++..+|.| .+.++++|..++||.+++++|++.++++.
T Consensus 194 ~~~iR~~~p~~~iL~PGiGAQGg~~~~~~~~g~~~~~~g~li~v~R~il~a~~~~~~a~~l~~~i~~~~ 262 (477)
T PRK05500 194 LAKIRQIAPERLILLRSIWAEKGNLNQILTAGLNSNGDGLLIPVPQDLLGAANLKEQVKSLREEINQIR 262 (477)
T ss_pred HHHHHHhCCCCEEEccccccCCCCHHHHHHhhcccCcCceEEEeCHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 44455544554443332 1223347888888887 78888999999999999999999887653
No 232
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=95.73 E-value=0.027 Score=41.78 Aligned_cols=35 Identities=23% Similarity=0.417 Sum_probs=31.3
Q ss_pred CCcEEEEcCCC-cccHHHHHHcCCCEEEEeccccCC
Q psy11601 29 TLNIEVDGGVG-PNTIDECAKAGANWIVSGTAVINC 63 (82)
Q Consensus 29 ~~~i~~dGGI~-~~ni~~~~~~Gad~vv~gs~i~~~ 63 (82)
++|+.+||||. ...+...+++||+.+.+|+.+.+.
T Consensus 327 ~vpviadGGi~~~~di~kAla~GA~~V~~G~~~a~~ 362 (450)
T TIGR01302 327 GIPVIADGGIRYSGDIVKALAAGADAVMLGSLLAGT 362 (450)
T ss_pred CCeEEEeCCCCCHHHHHHHHHcCCCEEEECchhhcC
Confidence 68999999995 678889999999999999999874
No 233
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=95.72 E-value=0.049 Score=39.49 Aligned_cols=65 Identities=15% Similarity=0.234 Sum_probs=44.9
Q ss_pred cchHHHHHHHHHhC-CCCcEEEEcCCCc-ccHHHHHHcCCCEEEEeccccC------CCCHHHHHHHHHHHHH
Q psy11601 14 QDMMPKVKWLRENY-PTLNIEVDGGVGP-NTIDECAKAGANWIVSGTAVIN------CPDRIQAISTLKSSVQ 78 (82)
Q Consensus 14 ~~~~~ki~~~~~~~-~~~~i~~dGGI~~-~ni~~~~~~Gad~vv~gs~i~~------~~d~~~~~~~l~~~~~ 78 (82)
|..++-+.++++.. +++||.++|||.. ..+...+..||+.+.+|++++. .+.....++.|++.++
T Consensus 260 ~~~~~~l~~i~~a~~~~i~vi~dGGIr~g~Di~kaLalGA~~V~iGr~~l~~la~~G~~gv~~~l~~l~~El~ 332 (351)
T cd04737 260 PASFDSLPEIAEAVNHRVPIIFDSGVRRGEHVFKALASGADAVAVGRPVLYGLALGGAQGVASVLEHLNKELK 332 (351)
T ss_pred chHHHHHHHHHHHhCCCCeEEEECCCCCHHHHHHHHHcCCCEEEECHHHHHHHhhchHHHHHHHHHHHHHHHH
Confidence 45667777776643 4699999999974 5677788899999999988543 1223344445554444
No 234
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=95.72 E-value=0.039 Score=36.69 Aligned_cols=47 Identities=19% Similarity=0.190 Sum_probs=35.6
Q ss_pred chHHHHHHHHHhCCCCcEEEEcCCCcc-cHHHHHHcCCCEEEEeccccC
Q psy11601 15 DMMPKVKWLRENYPTLNIEVDGGVGPN-TIDECAKAGANWIVSGTAVIN 62 (82)
Q Consensus 15 ~~~~ki~~~~~~~~~~~i~~dGGI~~~-ni~~~~~~Gad~vv~gs~i~~ 62 (82)
..++.++.+++.. ++||.+-|+|... .+..+.++|||+++++...+.
T Consensus 59 g~~~~~~~i~~~v-~iPi~~~~~i~~~~~v~~~~~~Gad~v~l~~~~~~ 106 (217)
T cd00331 59 GSLEDLRAVREAV-SLPVLRKDFIIDPYQIYEARAAGADAVLLIVAALD 106 (217)
T ss_pred CCHHHHHHHHHhc-CCCEEECCeecCHHHHHHHHHcCCCEEEEeeccCC
Confidence 3456666666664 6888876666555 899999999999999987664
No 235
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=95.64 E-value=0.042 Score=41.12 Aligned_cols=48 Identities=19% Similarity=0.283 Sum_probs=37.1
Q ss_pred hHHHHHHHHHh--CCCCcEEEEcCCC-cccHHHHHHcCCCEEEEeccccCC
Q psy11601 16 MMPKVKWLREN--YPTLNIEVDGGVG-PNTIDECAKAGANWIVSGTAVINC 63 (82)
Q Consensus 16 ~~~ki~~~~~~--~~~~~i~~dGGI~-~~ni~~~~~~Gad~vv~gs~i~~~ 63 (82)
.++-+.++++. ..++|+.+||||. ...+...+.+|||.+++|++|.+.
T Consensus 316 ~~~~~~~~~~~~~~~~~~viadGGi~~~~di~kAla~GA~~v~~G~~~a~~ 366 (486)
T PRK05567 316 QITAIADAAEAAKKYGIPVIADGGIRYSGDIAKALAAGASAVMLGSMLAGT 366 (486)
T ss_pred HHHHHHHHHHHhccCCCeEEEcCCCCCHHHHHHHHHhCCCEEEECcccccc
Confidence 45555554442 1368999999996 567888889999999999999874
No 236
>cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD. NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=95.64 E-value=0.029 Score=41.59 Aligned_cols=34 Identities=24% Similarity=0.493 Sum_probs=31.1
Q ss_pred CCcEEEEcCC-CcccHHHHHHcCCCEEEEeccccC
Q psy11601 29 TLNIEVDGGV-GPNTIDECAKAGANWIVSGTAVIN 62 (82)
Q Consensus 29 ~~~i~~dGGI-~~~ni~~~~~~Gad~vv~gs~i~~ 62 (82)
++||.+.||| +.+.+......||+.+.+||....
T Consensus 219 ~ipViAAGGI~tg~~vaAA~alGAd~V~~GT~fla 253 (418)
T cd04742 219 PIRVGAAGGIGTPEAAAAAFALGADFIVTGSINQC 253 (418)
T ss_pred CceEEEECCCCCHHHHHHHHHcCCcEEeeccHHHh
Confidence 5899999999 899999999999999999998654
No 237
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=95.62 E-value=0.031 Score=41.51 Aligned_cols=46 Identities=20% Similarity=0.297 Sum_probs=40.5
Q ss_pred CCcchHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEe
Q psy11601 12 FMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSG 57 (82)
Q Consensus 12 ~~~~~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~g 57 (82)
..+..++.|+++++.+|+++|.+=+..+.+.+..+.++|||++.+|
T Consensus 248 ~~~~~~~~i~~i~~~~~~~~vi~G~v~t~~~a~~l~~aGad~i~vg 293 (450)
T TIGR01302 248 HSIYVIDSIKEIKKTYPDLDIIAGNVATAEQAKALIDAGADGLRVG 293 (450)
T ss_pred cHhHHHHHHHHHHHhCCCCCEEEEeCCCHHHHHHHHHhCCCEEEEC
Confidence 4467888899999988889999988999999999999999999655
No 238
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=95.62 E-value=0.018 Score=41.34 Aligned_cols=54 Identities=11% Similarity=0.188 Sum_probs=43.6
Q ss_pred HHHHHHHHHhCCCCcEEEEcCC-CcccHHHHHHcC-CCEEEEeccccCCCCHHHHHH
Q psy11601 17 MPKVKWLRENYPTLNIEVDGGV-GPNTIDECAKAG-ANWIVSGTAVINCPDRIQAIS 71 (82)
Q Consensus 17 ~~ki~~~~~~~~~~~i~~dGGI-~~~ni~~~~~~G-ad~vv~gs~i~~~~d~~~~~~ 71 (82)
++-.+++++.. ++||.+.|++ +++.+.++++.| +|.|.+|+.++..+++...+.
T Consensus 265 ~~~~~~ik~~v-~iPVi~~G~i~~~~~a~~~i~~g~~D~V~~gR~~l~dP~~~~k~~ 320 (353)
T cd02930 265 AWATAKLKRAV-DIPVIASNRINTPEVAERLLADGDADMVSMARPFLADPDFVAKAA 320 (353)
T ss_pred HHHHHHHHHhC-CCCEEEcCCCCCHHHHHHHHHCCCCChhHhhHHHHHCccHHHHHH
Confidence 33456677765 6899999998 788899999977 999999999998888765543
No 239
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=95.60 E-value=0.078 Score=38.74 Aligned_cols=47 Identities=19% Similarity=0.283 Sum_probs=36.5
Q ss_pred cchHHHHHHHHHhC-CCCcEEEEcCCCc-ccHHHHHHcCCCEEEEeccc
Q psy11601 14 QDMMPKVKWLRENY-PTLNIEVDGGVGP-NTIDECAKAGANWIVSGTAV 60 (82)
Q Consensus 14 ~~~~~ki~~~~~~~-~~~~i~~dGGI~~-~ni~~~~~~Gad~vv~gs~i 60 (82)
+..++-|.++++.. .++||.+||||.. ..+...+..|||.+.+|+.+
T Consensus 267 ~a~~~~L~ei~~av~~~i~vi~dGGIr~g~Dv~KaLalGAd~V~igR~~ 315 (367)
T TIGR02708 267 PAAFDSLQEVAEAVDKRVPIVFDSGVRRGQHVFKALASGADLVALGRPV 315 (367)
T ss_pred CcHHHHHHHHHHHhCCCCcEEeeCCcCCHHHHHHHHHcCCCEEEEcHHH
Confidence 55577777777643 4699999999974 45666777999999999884
No 240
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=95.57 E-value=0.064 Score=37.24 Aligned_cols=55 Identities=18% Similarity=0.182 Sum_probs=42.2
Q ss_pred HHHHHHHHhCC-CCcEEEEcCCCc-ccHHHHHHcCCCEEEEeccccCCCCHHHHHHHH
Q psy11601 18 PKVKWLRENYP-TLNIEVDGGVGP-NTIDECAKAGANWIVSGTAVINCPDRIQAISTL 73 (82)
Q Consensus 18 ~ki~~~~~~~~-~~~i~~dGGI~~-~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l 73 (82)
+.-.++....| +..+++-+||+- +++..+... +|.|.+|+++.+++||.+.+++|
T Consensus 190 ~~~~~L~~~ip~~~~~IsESGI~t~~d~~~l~~~-~davLvG~~lm~~~d~~~~~~~l 246 (247)
T PRK13957 190 NLVEEVAAFLPPNIVKVGESGIESRSDLDKFRKL-VDAALIGTYFMEKKDIRKAWLSL 246 (247)
T ss_pred HHHHHHHhhCCCCcEEEEcCCCCCHHHHHHHHHh-CCEEEECHHHhCCCCHHHHHHHh
Confidence 44445555544 355667788874 778888886 99999999999999999888765
No 241
>PLN02460 indole-3-glycerol-phosphate synthase
Probab=95.51 E-value=0.061 Score=38.95 Aligned_cols=46 Identities=17% Similarity=0.291 Sum_probs=39.7
Q ss_pred CCcEEEEcCCC-cccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHH
Q psy11601 29 TLNIEVDGGVG-PNTIDECAKAGANWIVSGTAVINCPDRIQAISTLK 74 (82)
Q Consensus 29 ~~~i~~dGGI~-~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~ 74 (82)
++.++.-+||. .+.+..+.++|+|.|-+|.++.+++||.+.+++|.
T Consensus 288 ~~~~VsESGI~t~~Dv~~l~~~GadAvLVGEsLMr~~dp~~~l~~L~ 334 (338)
T PLN02460 288 GIIVVGESGLFTPDDVAYVQNAGVKAVLVGESLVKQDDPGKGIAGLF 334 (338)
T ss_pred CeEEEECCCCCCHHHHHHHHHCCCCEEEECHHHhCCCCHHHHHHHHh
Confidence 34466668885 58999999999999999999999999999988875
No 242
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=95.51 E-value=0.035 Score=38.53 Aligned_cols=51 Identities=22% Similarity=0.368 Sum_probs=40.0
Q ss_pred chHHHHHHHHHhCCCCcEEEEcCCC-cccHHHHHHcCCCEEEEeccccCCCCH
Q psy11601 15 DMMPKVKWLRENYPTLNIEVDGGVG-PNTIDECAKAGANWIVSGTAVINCPDR 66 (82)
Q Consensus 15 ~~~~ki~~~~~~~~~~~i~~dGGI~-~~ni~~~~~~Gad~vv~gs~i~~~~d~ 66 (82)
-+++-+++..+.. .+|+.+-|||+ .++++.++.+|||-+.+.|+-...++.
T Consensus 61 ~~~~vv~r~A~~v-fiPltVGGGI~s~eD~~~ll~aGADKVSINsaAv~~p~l 112 (256)
T COG0107 61 TMLDVVERVAEQV-FIPLTVGGGIRSVEDARKLLRAGADKVSINSAAVKDPEL 112 (256)
T ss_pred hHHHHHHHHHhhc-eeeeEecCCcCCHHHHHHHHHcCCCeeeeChhHhcChHH
Confidence 4556666655554 58999999995 799999999999999999886655553
No 243
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=95.49 E-value=0.036 Score=41.63 Aligned_cols=46 Identities=24% Similarity=0.250 Sum_probs=39.7
Q ss_pred CCcchHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEe
Q psy11601 12 FMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSG 57 (82)
Q Consensus 12 ~~~~~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~g 57 (82)
.....++.++++++.+|++|+.+.-+.+.+.+..+.++|||.|-+|
T Consensus 249 ~~~~~~~~i~~i~~~~~~~~vi~g~~~t~~~~~~l~~~G~d~i~vg 294 (475)
T TIGR01303 249 HQVKMISAIKAVRALDLGVPIVAGNVVSAEGVRDLLEAGANIIKVG 294 (475)
T ss_pred CcHHHHHHHHHHHHHCCCCeEEEeccCCHHHHHHHHHhCCCEEEEC
Confidence 3466778899999988889999966999999999999999999744
No 244
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=95.46 E-value=0.064 Score=36.18 Aligned_cols=44 Identities=23% Similarity=0.262 Sum_probs=32.6
Q ss_pred CCCcchHHHHHHHHHh-CCCCcEEEEcCCCcccHHHHHH-cCCCEE
Q psy11601 11 KFMQDMMPKVKWLREN-YPTLNIEVDGGVGPNTIDECAK-AGANWI 54 (82)
Q Consensus 11 ~~~~~~~~ki~~~~~~-~~~~~i~~dGGI~~~ni~~~~~-~Gad~v 54 (82)
.-..+.++.|+++.+. ..++.|.+-|||+.+|++.+.+ +|+.-|
T Consensus 151 ~~a~~g~~~L~~lv~~a~~~i~Im~GgGv~~~nv~~l~~~tg~~~~ 196 (201)
T PF03932_consen 151 PTALEGIENLKELVEQAKGRIEIMPGGGVRAENVPELVEETGVREI 196 (201)
T ss_dssp SSTTTCHHHHHHHHHHHTTSSEEEEESS--TTTHHHHHHHHT-SEE
T ss_pred CCHHHHHHHHHHHHHHcCCCcEEEecCCCCHHHHHHHHHhhCCeEE
Confidence 3445678888887654 3468999999999999999988 888765
No 245
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=95.46 E-value=0.033 Score=38.75 Aligned_cols=49 Identities=16% Similarity=0.075 Sum_probs=38.2
Q ss_pred CCCCCcchHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEe
Q psy11601 9 GQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSG 57 (82)
Q Consensus 9 gq~~~~~~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~g 57 (82)
|+.-..+.++.|+++.+......|.+=|||+.+|+.++...|+.-|=.+
T Consensus 150 g~~~a~~g~~~L~~lv~~a~~~~Im~GgGV~~~Nv~~l~~tG~~~~H~s 198 (248)
T PRK11572 150 QQQDAEQGLSLIMELIAASDGPIIMAGAGVRLSNLHKFLDAGVREVHSS 198 (248)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHHcCCCEEeeC
Confidence 3444567788888887765454599999999999999999999877544
No 246
>PRK14905 triosephosphate isomerase/PTS system glucose/sucrose-specific transporter subunit IIB; Provisional
Probab=95.44 E-value=0.07 Score=38.79 Aligned_cols=71 Identities=15% Similarity=0.098 Sum_probs=51.6
Q ss_pred CCCCCCCCc----chHHHHHHH-HHh----CCCCcEEEEcCCCcccHHHHH-HcCCCEEEEeccccCCCCHHHHHHHHHH
Q psy11601 6 GFGGQKFMQ----DMMPKVKWL-REN----YPTLNIEVDGGVGPNTIDECA-KAGANWIVSGTAVINCPDRIQAISTLKS 75 (82)
Q Consensus 6 G~~gq~~~~----~~~~ki~~~-~~~----~~~~~i~~dGGI~~~ni~~~~-~~Gad~vv~gs~i~~~~d~~~~~~~l~~ 75 (82)
|.+|+.-.+ +..+.|++. .+. .++++|.-=|+|+++|+.++. ..++|++-+|++..+++++.+-++.+.+
T Consensus 181 GTgg~~as~~~~~~~~~~Ir~~l~~~~~~~~~~v~ILYGGSV~~~N~~~l~~~~~iDG~LVG~asl~~~~f~~Ii~~~~~ 260 (355)
T PRK14905 181 GEGGIPASAEYADEKHAIIKQCLFELFAEESKKIPVLYGGSVNLENANELIMKPHIDGLFIGRSAWDAQCFHALIADALK 260 (355)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHhccccCceeEEEeCcCCHHHHHHHhcCCCCCEEEechhhccHHHHHHHHHHHHH
Confidence 555666666 444455553 322 235899999999999999874 5679999999999988888777666655
Q ss_pred H
Q psy11601 76 S 76 (82)
Q Consensus 76 ~ 76 (82)
.
T Consensus 261 ~ 261 (355)
T PRK14905 261 A 261 (355)
T ss_pred h
Confidence 4
No 247
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=95.24 E-value=0.053 Score=40.61 Aligned_cols=45 Identities=18% Similarity=0.350 Sum_probs=40.2
Q ss_pred CcchHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEe
Q psy11601 13 MQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSG 57 (82)
Q Consensus 13 ~~~~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~g 57 (82)
....++.++++++..|++|+.+-++.+.+.+..+.++|||+|.+|
T Consensus 253 ~~~vl~~i~~i~~~~p~~~vi~g~v~t~e~a~~l~~aGad~i~vg 297 (486)
T PRK05567 253 SEGVLDRVREIKAKYPDVQIIAGNVATAEAARALIEAGADAVKVG 297 (486)
T ss_pred chhHHHHHHHHHhhCCCCCEEEeccCCHHHHHHHHHcCCCEEEEC
Confidence 356888899999887789999999999999999999999999775
No 248
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=95.17 E-value=0.069 Score=39.97 Aligned_cols=67 Identities=21% Similarity=0.359 Sum_probs=46.8
Q ss_pred CCCCCCCCCcchHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCC---CCHHHHHHHHHHHHHH
Q psy11601 5 PGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINC---PDRIQAISTLKSSVQK 79 (82)
Q Consensus 5 pG~~gq~~~~~~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~---~d~~~~~~~l~~~~~~ 79 (82)
+|..|+.|.-..+. ... ..|+...||++++|+.+....++.+|=+.|.+=.. .|+ +.+++|.+.++.
T Consensus 384 ~GGtG~~~DW~~l~------~~~-~~p~iLAGGL~peNV~~ai~~~P~gVDVsSGVE~~pG~KD~-~Ki~~Fi~~vr~ 453 (454)
T PRK09427 384 QGGTGQTFDWSLLP------GQS-LDNVLLAGGLNPDNCQQAAQLGCAGLDFNSGVESAPGIKDA-QKLASVFQTLRA 453 (454)
T ss_pred CCCCCCccChHHhh------hcc-cCCEEEECCCCHHHHHHHHhcCCCEEEeCCcccCCCCCcCH-HHHHHHHHHHhh
Confidence 46667777653332 122 46899999999999999999999999888888643 343 355666555543
No 249
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=95.11 E-value=0.11 Score=37.36 Aligned_cols=46 Identities=20% Similarity=0.426 Sum_probs=37.0
Q ss_pred hHHHHHHHHHhCCCCcEEEEcCCCc-ccHHHHHHcCCCEEEEeccccC
Q psy11601 16 MMPKVKWLRENYPTLNIEVDGGVGP-NTIDECAKAGANWIVSGTAVIN 62 (82)
Q Consensus 16 ~~~ki~~~~~~~~~~~i~~dGGI~~-~ni~~~~~~Gad~vv~gs~i~~ 62 (82)
.+.-|.++++.. ++||.+||||+- .++...+.+|||.+.+|+.+-+
T Consensus 186 ~l~ai~ev~~a~-~~pVIadGGIr~~~Di~KALa~GAd~Vmig~~~ag 232 (321)
T TIGR01306 186 QLAALRWCAKAA-RKPIIADGGIRTHGDIAKSIRFGASMVMIGSLFAG 232 (321)
T ss_pred HHHHHHHHHHhc-CCeEEEECCcCcHHHHHHHHHcCCCEEeechhhcC
Confidence 356677776654 689999999974 5677888899999999988866
No 250
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=95.11 E-value=0.14 Score=37.03 Aligned_cols=48 Identities=19% Similarity=0.268 Sum_probs=35.5
Q ss_pred chHHHHHHHHH----hCCCCcEEEEcCCC-cccHHHHHHcCCCEEEEeccccC
Q psy11601 15 DMMPKVKWLRE----NYPTLNIEVDGGVG-PNTIDECAKAGANWIVSGTAVIN 62 (82)
Q Consensus 15 ~~~~ki~~~~~----~~~~~~i~~dGGI~-~~ni~~~~~~Gad~vv~gs~i~~ 62 (82)
..++-+.++++ ...++||.++|||. ...+...+..||+.+.+|++++.
T Consensus 253 ~~~~~L~~i~~~~~~~~~~~~vi~~GGIr~G~Dv~kalaLGA~aV~iG~~~l~ 305 (344)
T cd02922 253 APIEVLLEIRKHCPEVFDKIEVYVDGGVRRGTDVLKALCLGAKAVGLGRPFLY 305 (344)
T ss_pred CHHHHHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHHcCCCEEEECHHHHH
Confidence 34444444444 23468999999997 46788899999999999988654
No 251
>PLN02979 glycolate oxidase
Probab=95.10 E-value=0.15 Score=37.27 Aligned_cols=56 Identities=18% Similarity=0.280 Sum_probs=41.6
Q ss_pred CCCCCCCCcchHHHHHHHHHh-CCCCcEEEEcCCCcc-cHHHHHHcCCCEEEEecccc
Q psy11601 6 GFGGQKFMQDMMPKVKWLREN-YPTLNIEVDGGVGPN-TIDECAKAGANWIVSGTAVI 61 (82)
Q Consensus 6 G~~gq~~~~~~~~ki~~~~~~-~~~~~i~~dGGI~~~-ni~~~~~~Gad~vv~gs~i~ 61 (82)
|..+....|..++-+.++++. .++++|.+||||+.. .+...+..|||.+.+|+.+.
T Consensus 254 GGrqld~~p~t~~~L~ei~~~~~~~~~Vi~dGGIr~G~Di~KALALGAdaV~iGrp~L 311 (366)
T PLN02979 254 GARQLDYVPATISALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 311 (366)
T ss_pred CcCCCCCchhHHHHHHHHHHHhCCCCeEEEeCCcCcHHHHHHHHHcCCCEEEEcHHHH
Confidence 333334556678888887664 356999999999754 56677789999999998854
No 252
>PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside []. It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A ....
Probab=95.08 E-value=0.06 Score=38.50 Aligned_cols=53 Identities=13% Similarity=0.261 Sum_probs=40.6
Q ss_pred HHHHHHHHhCCCCcEEEEcCCCccc-HHHHHHcC-CCEEEEeccccCCCCHHHHHH
Q psy11601 18 PKVKWLRENYPTLNIEVDGGVGPNT-IDECAKAG-ANWIVSGTAVINCPDRIQAIS 71 (82)
Q Consensus 18 ~ki~~~~~~~~~~~i~~dGGI~~~n-i~~~~~~G-ad~vv~gs~i~~~~d~~~~~~ 71 (82)
+-.+.+++.. +.|+.+.||++... +.++++.| +|.|.+|+++...+|+..+++
T Consensus 281 ~~a~~ik~~~-~~pvi~~G~i~~~~~ae~~l~~g~~DlV~~gR~~ladPd~~~k~~ 335 (341)
T PF00724_consen 281 DLAEAIKKAV-KIPVIGVGGIRTPEQAEKALEEGKADLVAMGRPLLADPDLPNKAR 335 (341)
T ss_dssp HHHHHHHHHH-SSEEEEESSTTHHHHHHHHHHTTSTSEEEESHHHHH-TTHHHHHH
T ss_pred hhhhhhhhhc-CceEEEEeeecchhhhHHHHhcCCceEeeccHHHHhCchHHHHHH
Confidence 3445566654 58999999998877 77777766 999999999998888876654
No 253
>cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain. GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.
Probab=95.08 E-value=0.075 Score=38.87 Aligned_cols=34 Identities=21% Similarity=0.356 Sum_probs=30.1
Q ss_pred CCCcEEEEcCC-CcccHHHHHHcCCCEEEEecccc
Q psy11601 28 PTLNIEVDGGV-GPNTIDECAKAGANWIVSGTAVI 61 (82)
Q Consensus 28 ~~~~i~~dGGI-~~~ni~~~~~~Gad~vv~gs~i~ 61 (82)
.+++|.++||| +...+...+..|||.+-+|+...
T Consensus 284 ~~i~viasGGI~~g~Dv~kalaLGAd~V~ig~~~l 318 (392)
T cd02808 284 DRVSLIASGGLRTGADVAKALALGADAVGIGTAAL 318 (392)
T ss_pred CCCeEEEECCCCCHHHHHHHHHcCCCeeeechHHH
Confidence 36899999999 67889999999999999998854
No 254
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=95.07 E-value=0.063 Score=39.05 Aligned_cols=44 Identities=23% Similarity=0.368 Sum_probs=32.5
Q ss_pred HHHHHHHhCCCCcEEEEcCCCc-ccHHHHHHcCCCEEEEeccccCC
Q psy11601 19 KVKWLRENYPTLNIEVDGGVGP-NTIDECAKAGANWIVSGTAVINC 63 (82)
Q Consensus 19 ki~~~~~~~~~~~i~~dGGI~~-~ni~~~~~~Gad~vv~gs~i~~~ 63 (82)
...+.++.+ .+||.+||||+- .++...+.+|||.+.+|+.+-+.
T Consensus 202 ~~a~~a~~~-~v~iIADGGi~~sGDi~KAla~GAd~VMlG~llAgt 246 (352)
T PF00478_consen 202 ECAEAARDY-GVPIIADGGIRTSGDIVKALAAGADAVMLGSLLAGT 246 (352)
T ss_dssp HHHHHHHCT-TSEEEEESS-SSHHHHHHHHHTT-SEEEESTTTTTB
T ss_pred HHHHHhhhc-cCceeecCCcCcccceeeeeeecccceeechhhccC
Confidence 334444433 699999999974 68888889999999999998763
No 255
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=94.93 E-value=0.028 Score=40.93 Aligned_cols=34 Identities=21% Similarity=0.461 Sum_probs=30.9
Q ss_pred CCcEEEEcCC-CcccHHHHHHcCCCEEEEeccccC
Q psy11601 29 TLNIEVDGGV-GPNTIDECAKAGANWIVSGTAVIN 62 (82)
Q Consensus 29 ~~~i~~dGGI-~~~ni~~~~~~Gad~vv~gs~i~~ 62 (82)
++||.+|||| +...+...+.+|||.+.+||.+..
T Consensus 256 ~vpVIAdGGI~~~~diakAlalGAd~Vm~Gs~fa~ 290 (368)
T PRK08649 256 YVHVIADGGIGTSGDIAKAIACGADAVMLGSPLAR 290 (368)
T ss_pred CCeEEEeCCCCCHHHHHHHHHcCCCeecccchhcc
Confidence 5899999999 677888999999999999999876
No 256
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=94.91 E-value=0.063 Score=40.47 Aligned_cols=46 Identities=24% Similarity=0.293 Sum_probs=37.6
Q ss_pred CCcchHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEe
Q psy11601 12 FMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSG 57 (82)
Q Consensus 12 ~~~~~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~g 57 (82)
..+..++.|+++++..|+++|.+=...+.+.+..+.++|||++.+|
T Consensus 265 ~s~~~~~~i~~ik~~~~~~~v~aG~V~t~~~a~~~~~aGad~I~vg 310 (495)
T PTZ00314 265 NSIYQIDMIKKLKSNYPHVDIIAGNVVTADQAKNLIDAGADGLRIG 310 (495)
T ss_pred CchHHHHHHHHHHhhCCCceEEECCcCCHHHHHHHHHcCCCEEEEC
Confidence 3455688899999987778888856667899999999999999764
No 257
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=94.84 E-value=0.094 Score=38.79 Aligned_cols=46 Identities=20% Similarity=0.321 Sum_probs=40.3
Q ss_pred CCcchHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEe
Q psy11601 12 FMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSG 57 (82)
Q Consensus 12 ~~~~~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~g 57 (82)
......+.++++++.+|++++++-+-.+.+....+.++|||.|.+|
T Consensus 177 ~~~~~~~~v~~ik~~~p~~~vi~g~V~T~e~a~~l~~aGaD~I~vG 222 (404)
T PRK06843 177 HSTRIIELVKKIKTKYPNLDLIAGNIVTKEAALDLISVGADCLKVG 222 (404)
T ss_pred CChhHHHHHHHHHhhCCCCcEEEEecCCHHHHHHHHHcCCCEEEEC
Confidence 3556778899999988888888888889999999999999999877
No 258
>COG0149 TpiA Triosephosphate isomerase [Carbohydrate transport and metabolism]
Probab=94.77 E-value=0.11 Score=36.28 Aligned_cols=48 Identities=21% Similarity=0.302 Sum_probs=42.2
Q ss_pred CCCcEEEEcCCCcccHHHH-HHcCCCEEEEeccccCCCCHHHHHHHHHH
Q psy11601 28 PTLNIEVDGGVGPNTIDEC-AKAGANWIVSGTAVINCPDRIQAISTLKS 75 (82)
Q Consensus 28 ~~~~i~~dGGI~~~ni~~~-~~~Gad~vv~gs~i~~~~d~~~~~~~l~~ 75 (82)
+.++|.-=|||+++|+.++ .+.++|++-+|++.++++|+...++.+.+
T Consensus 201 ~~v~IlYGGSV~~~N~~e~~~~~~idG~LVGgAslka~~f~~ii~~~~~ 249 (251)
T COG0149 201 EKVRILYGGSVKPGNAAELAAQPDIDGALVGGASLKADDFLAILEALAK 249 (251)
T ss_pred CCeEEEEeCCcChhHHHHHhcCCCCCeEEEcceeecchhHHHHHHHHhh
Confidence 4799999999999999976 46899999999999999999888877654
No 259
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=94.76 E-value=0.061 Score=40.45 Aligned_cols=48 Identities=21% Similarity=0.213 Sum_probs=37.0
Q ss_pred hHHHHHHHHHh--CCCCcEEEEcCCC-cccHHHHHHcCCCEEEEeccccCC
Q psy11601 16 MMPKVKWLREN--YPTLNIEVDGGVG-PNTIDECAKAGANWIVSGTAVINC 63 (82)
Q Consensus 16 ~~~ki~~~~~~--~~~~~i~~dGGI~-~~ni~~~~~~Gad~vv~gs~i~~~ 63 (82)
.+.-+.++.+. ...+|+.+||||. ...+...+.+||+.+++|+.+-+.
T Consensus 315 ~~~av~~~~~~~~~~~~~via~ggi~~~~~~~~al~~ga~~v~~g~~~ag~ 365 (479)
T PRK07807 315 QFSAVLECAAAARELGAHVWADGGVRHPRDVALALAAGASNVMIGSWFAGT 365 (479)
T ss_pred HHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHcCCCeeeccHhhccC
Confidence 45555554442 1368999999995 578888999999999999998763
No 260
>PRK00042 tpiA triosephosphate isomerase; Provisional
Probab=94.67 E-value=0.078 Score=36.77 Aligned_cols=45 Identities=20% Similarity=0.311 Sum_probs=37.5
Q ss_pred CCCcEEEEcCCCcccHHHH-HHcCCCEEEEeccccCCCCHHHHHHH
Q psy11601 28 PTLNIEVDGGVGPNTIDEC-AKAGANWIVSGTAVINCPDRIQAIST 72 (82)
Q Consensus 28 ~~~~i~~dGGI~~~ni~~~-~~~Gad~vv~gs~i~~~~d~~~~~~~ 72 (82)
++++|.-=|+|+++|+.++ ...++|++-+|++.++++++.+-++.
T Consensus 202 ~~~~IlYGGSV~~~N~~~l~~~~~vDG~LVG~Asl~~~~f~~ii~~ 247 (250)
T PRK00042 202 EKVRILYGGSVKPDNAAELMAQPDIDGALVGGASLKAEDFLAIVKA 247 (250)
T ss_pred CCceEEEcCCCCHHHHHHHhcCCCCCEEEEeeeeechHHHHHHHHH
Confidence 3589999999999999876 56789999999999988877766543
No 261
>PRK13958 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=94.67 E-value=0.11 Score=34.88 Aligned_cols=66 Identities=14% Similarity=0.219 Sum_probs=41.3
Q ss_pred CCCCCCCCCcchHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHH--cCCCEEEEeccccC--CCCHHHHHHHHHHHHH
Q psy11601 5 PGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAK--AGANWIVSGTAVIN--CPDRIQAISTLKSSVQ 78 (82)
Q Consensus 5 pG~~gq~~~~~~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~--~Gad~vv~gs~i~~--~~d~~~~~~~l~~~~~ 78 (82)
+|-.|+.|.-+.+ +++ . ..|+...||++++|+.++.. .+..++=+.|.+=. -.|+ +.+++|.+.++
T Consensus 135 ~GGtG~~~dw~~~---~~~---~-~~p~iLAGGL~peNV~~a~~~~~~p~gVDvsSGVE~~G~KD~-~ki~~f~~~v~ 204 (207)
T PRK13958 135 YGGTGQTYDWTIL---KHI---K-DIPYLIAGGINSENIQTVEQLKLSHQGYDIASGIETNGRKDI-NKMTAIVNIVK 204 (207)
T ss_pred CCcCCcEeChHHh---hhc---c-CCCEEEECCCCHHHHHHHHhcCCCCCEEEcccccCCCCCCCH-HHHHHHHHHHH
Confidence 3555666654433 333 1 35899999999999999764 47777777777642 2344 35555555443
No 262
>PRK11197 lldD L-lactate dehydrogenase; Provisional
Probab=94.56 E-value=0.21 Score=36.76 Aligned_cols=65 Identities=11% Similarity=0.172 Sum_probs=44.5
Q ss_pred cchHHHHHHHHHhC-CCCcEEEEcCCCc-ccHHHHHHcCCCEEEEecccc-C-----CCCHHHHHHHHHHHHH
Q psy11601 14 QDMMPKVKWLRENY-PTLNIEVDGGVGP-NTIDECAKAGANWIVSGTAVI-N-----CPDRIQAISTLKSSVQ 78 (82)
Q Consensus 14 ~~~~~ki~~~~~~~-~~~~i~~dGGI~~-~ni~~~~~~Gad~vv~gs~i~-~-----~~d~~~~~~~l~~~~~ 78 (82)
+..++-+.++++.. .++||.+||||.. ..+...+..||+.+.+|+.+. . .+.....++.|++.++
T Consensus 284 ~~t~~~L~~i~~a~~~~~~vi~dGGIr~g~Di~KALaLGA~~V~iGr~~l~~la~~G~~gv~~~l~~l~~El~ 356 (381)
T PRK11197 284 LSSARALPAIADAVKGDITILADSGIRNGLDVVRMIALGADTVLLGRAFVYALAAAGQAGVANLLDLIEKEMR 356 (381)
T ss_pred ccHHHHHHHHHHHhcCCCeEEeeCCcCcHHHHHHHHHcCcCceeEhHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 45566677766543 4699999999975 457778899999999998854 2 2234455555555444
No 263
>PLN02429 triosephosphate isomerase
Probab=94.54 E-value=0.16 Score=36.44 Aligned_cols=64 Identities=19% Similarity=0.229 Sum_probs=47.1
Q ss_pred CCCCCcchHHHHHH-HHH----h-----CCCCcEEEEcCCCcccHHHHH-HcCCCEEEEeccccCCCCHHHHHHH
Q psy11601 9 GQKFMQDMMPKVKW-LRE----N-----YPTLNIEVDGGVGPNTIDECA-KAGANWIVSGTAVINCPDRIQAIST 72 (82)
Q Consensus 9 gq~~~~~~~~ki~~-~~~----~-----~~~~~i~~dGGI~~~ni~~~~-~~Gad~vv~gs~i~~~~d~~~~~~~ 72 (82)
|+.-.|+..+.+.+ +|+ . .++++|.-=|+|+++|+.++. +.++|++-+|++..+++++..-++.
T Consensus 233 Gk~as~e~~~~v~~~IR~~l~~~~~~~va~~irILYGGSV~~~N~~el~~~~diDG~LVGgASL~~~~F~~Ii~~ 307 (315)
T PLN02429 233 GKVASPQQAQEVHVAVRGWLKKNVSEEVASKTRIIYGGSVNGGNSAELAKEEDIDGFLVGGASLKGPEFATIVNS 307 (315)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHhhhhhccCceEEEcCccCHHHHHHHhcCCCCCEEEeecceecHHHHHHHHHH
Confidence 55555666665544 231 1 246899999999999998876 6889999999999987777665554
No 264
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=94.52 E-value=0.09 Score=35.59 Aligned_cols=48 Identities=17% Similarity=0.242 Sum_probs=34.7
Q ss_pred chHHHHHHHHHhCCCCcEEEEcCCCc-ccHHHHHH--cCCCEEEEeccccCCCC
Q psy11601 15 DMMPKVKWLRENYPTLNIEVDGGVGP-NTIDECAK--AGANWIVSGTAVINCPD 65 (82)
Q Consensus 15 ~~~~ki~~~~~~~~~~~i~~dGGI~~-~ni~~~~~--~Gad~vv~gs~i~~~~d 65 (82)
..++-|+++.+. +|+.++|||+- +.++.+.. .+|+.+++||..+..++
T Consensus 66 ~n~~~i~~i~~~---~~v~vgGGirs~e~~~~~~~~l~~a~rvvigT~a~~~p~ 116 (221)
T TIGR00734 66 DNFSLLSKLSKR---VELIADCGVRSPEDLETLPFTLEFASRVVVATETLDITE 116 (221)
T ss_pred chHHHHHHHHhh---CcEEEcCccCCHHHHHHHHhhhccceEEeecChhhCCHH
Confidence 445666666664 48999999984 45666644 36999999999887554
No 265
>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase
Probab=94.48 E-value=0.25 Score=36.12 Aligned_cols=50 Identities=18% Similarity=0.306 Sum_probs=38.3
Q ss_pred CCcchHHHHHHHHHh-CCCCcEEEEcCCCcc-cHHHHHHcCCCEEEEecccc
Q psy11601 12 FMQDMMPKVKWLREN-YPTLNIEVDGGVGPN-TIDECAKAGANWIVSGTAVI 61 (82)
Q Consensus 12 ~~~~~~~ki~~~~~~-~~~~~i~~dGGI~~~-ni~~~~~~Gad~vv~gs~i~ 61 (82)
+.+..++-|.++++. ..+++|.+||||... .+-..+..||+.+.+|+.+.
T Consensus 261 ~~~~t~~~L~ei~~av~~~~~vi~dGGIr~G~Dv~KALALGA~aV~iGr~~l 312 (367)
T PLN02493 261 YVPATISALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 312 (367)
T ss_pred CchhHHHHHHHHHHHhCCCCeEEEeCCcCcHHHHHHHHHcCCCEEEEcHHHH
Confidence 345567777777654 346999999999854 46677788999999998854
No 266
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=94.43 E-value=0.073 Score=35.38 Aligned_cols=48 Identities=25% Similarity=0.383 Sum_probs=32.7
Q ss_pred CCCCCCCCCcchHHHHHHHHHhC-CCCcEEEEcCCC-cccHHHHHHcCCCEEE
Q psy11601 5 PGFGGQKFMQDMMPKVKWLRENY-PTLNIEVDGGVG-PNTIDECAKAGANWIV 55 (82)
Q Consensus 5 pG~~gq~~~~~~~~ki~~~~~~~-~~~~i~~dGGI~-~~ni~~~~~~Gad~vv 55 (82)
.||.... ..++.++.+++.. .+++|.+.|||+ .+.+.++..+|++.|-
T Consensus 152 TG~~~~~---at~~~v~~~~~~~~~~v~ik~aGGikt~~~~l~~~~~g~~riG 201 (203)
T cd00959 152 TGFGPGG---ATVEDVKLMKEAVGGRVGVKAAGGIRTLEDALAMIEAGATRIG 201 (203)
T ss_pred CCCCCCC---CCHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHHhChhhcc
Confidence 4565433 4444444444432 468999999998 6778889999998763
No 267
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=94.42 E-value=0.098 Score=39.46 Aligned_cols=45 Identities=18% Similarity=0.271 Sum_probs=35.1
Q ss_pred HHHHHHHHhCCCCcEEEEcCC-CcccHHHHHHcCCCEEEEeccccCC
Q psy11601 18 PKVKWLRENYPTLNIEVDGGV-GPNTIDECAKAGANWIVSGTAVINC 63 (82)
Q Consensus 18 ~ki~~~~~~~~~~~i~~dGGI-~~~ni~~~~~~Gad~vv~gs~i~~~ 63 (82)
..+.++.+.. ++|+.+|||| +...+...+++||+.+.+|+.+.+.
T Consensus 334 ~~~~~~~~~~-~v~vIadGGi~~~~di~kAla~GA~~Vm~G~~~a~~ 379 (495)
T PTZ00314 334 YHVARYARER-GVPCIADGGIKNSGDICKALALGADCVMLGSLLAGT 379 (495)
T ss_pred HHHHHHHhhc-CCeEEecCCCCCHHHHHHHHHcCCCEEEECchhccc
Confidence 3444444433 5899999996 5678889999999999999998763
No 268
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=94.40 E-value=0.17 Score=36.83 Aligned_cols=57 Identities=16% Similarity=0.268 Sum_probs=38.6
Q ss_pred HHHHHHHHHhC--CCCcEEEEcCCCcc------cHHHH---HHcCCCEEEEeccccCCCCHHHHHHHHH
Q psy11601 17 MPKVKWLRENY--PTLNIEVDGGVGPN------TIDEC---AKAGANWIVSGTAVINCPDRIQAISTLK 74 (82)
Q Consensus 17 ~~ki~~~~~~~--~~~~i~~dGGI~~~------ni~~~---~~~Gad~vv~gs~i~~~~d~~~~~~~l~ 74 (82)
.++++.+.+.. .++|+++.||=+.+ .+... +++|+.++++|+-+|+.+++. +++-++
T Consensus 267 ~~~~~~~V~ac~ag~vpVviAGG~k~~~~e~L~~v~~a~~~i~aGa~Gv~iGRNIfQ~~~~e-a~~~~~ 334 (348)
T PRK09250 267 IDLVRYQVANCYMGRRGLINSGGASKGEDDLLDAVRTAVINKRAGGMGLIIGRKAFQRPMAE-GVKLLN 334 (348)
T ss_pred HHHHHHHHHhhccCCceEEEeCCCCCCHHHHHHHHHHHHHhhhcCCcchhhchhhhcCCcHH-HHHHHH
Confidence 34445444432 15899999998853 24456 778999999999999977654 443333
No 269
>COG2070 Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only]
Probab=94.39 E-value=0.056 Score=38.91 Aligned_cols=50 Identities=16% Similarity=0.202 Sum_probs=41.1
Q ss_pred CcchHHHHHHHHHhCCCCcEEEEcCC-CcccHHHHHHcCCCEEEEeccccC
Q psy11601 13 MQDMMPKVKWLRENYPTLNIEVDGGV-GPNTIDECAKAGANWIVSGTAVIN 62 (82)
Q Consensus 13 ~~~~~~ki~~~~~~~~~~~i~~dGGI-~~~ni~~~~~~Gad~vv~gs~i~~ 62 (82)
.+..+.-+.++++....+|+.+.||| +.+-+......||+.+-+||....
T Consensus 168 ~~~t~~Lv~ev~~~~~~iPViAAGGI~dg~~i~AAlalGA~gVq~GT~Fl~ 218 (336)
T COG2070 168 EVSTFALVPEVVDAVDGIPVIAAGGIADGRGIAAALALGADGVQMGTRFLA 218 (336)
T ss_pred CccHHHHHHHHHHHhcCCCEEEecCccChHHHHHHHHhccHHHHhhhhhhc
Confidence 55667778888887633899999999 466788889999999999999664
No 270
>KOG1799|consensus
Probab=94.22 E-value=0.096 Score=38.57 Aligned_cols=72 Identities=18% Similarity=0.136 Sum_probs=56.0
Q ss_pred CCCCCCCCcchHHHHHHHHHhCCCCcEEEEcCCC-cccHHHHHHcCCCEEEEeccccCCC--CHHHHHHHHHHHH
Q psy11601 6 GFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVG-PNTIDECAKAGANWIVSGTAVINCP--DRIQAISTLKSSV 77 (82)
Q Consensus 6 G~~gq~~~~~~~~ki~~~~~~~~~~~i~~dGGI~-~~ni~~~~~~Gad~vv~gs~i~~~~--d~~~~~~~l~~~~ 77 (82)
|+.+....|=.+.++-.+.+....+++..+|||. .++..+++-+|++.+=+.+++...+ -.+.-...|++.+
T Consensus 333 G~S~~AvRPIAl~~V~~IA~~m~~F~l~~~GGvEt~~~~~~Fil~Gs~~vQVCt~V~~~~~~~V~~~Ca~LK~~m 407 (471)
T KOG1799|consen 333 GYSYKAVRPIALAKVMNIAKMMKEFSLSGIGGVETGYDAAEFILLGSNTVQVCTGVMMHGYGHVKTLCAELKDFM 407 (471)
T ss_pred CccccccchHHHHHHHHHHHHhhcCccccccCcccccchhhHhhcCCcHhhhhhHHHhcCcchHHHHHHHHHHHH
Confidence 5778888999999999988876689999999994 6788899999999999999987643 2333344444433
No 271
>COG1304 idi Isopentenyl diphosphate isomerase (BS_ypgA, MTH48 and related proteins) [Coenzyme transport and metabolism]
Probab=94.17 E-value=0.12 Score=37.64 Aligned_cols=52 Identities=13% Similarity=0.209 Sum_probs=41.2
Q ss_pred CCCCcchHHHHHHHHHhCC-CCcEEEEcCCCc-ccHHHHHHcCCCEEEEecccc
Q psy11601 10 QKFMQDMMPKVKWLRENYP-TLNIEVDGGVGP-NTIDECAKAGANWIVSGTAVI 61 (82)
Q Consensus 10 q~~~~~~~~ki~~~~~~~~-~~~i~~dGGI~~-~ni~~~~~~Gad~vv~gs~i~ 61 (82)
..|-+.+++-|-+++...+ +++|.+||||+- ..+...++.|||.+-+|..+.
T Consensus 253 lD~g~st~~~L~ei~~av~~~~~vi~dGGiR~G~Dv~KAlALGA~~v~igrp~L 306 (360)
T COG1304 253 LDWGISTADSLPEIVEAVGDRIEVIADGGIRSGLDVAKALALGADAVGIGRPFL 306 (360)
T ss_pred ccCCCChHHHHHHHHHHhCCCeEEEecCCCCCHHHHHHHHHhCCchhhhhHHHH
Confidence 4455777788888887765 499999999974 467778899999999998754
No 272
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=94.17 E-value=0.14 Score=36.62 Aligned_cols=44 Identities=18% Similarity=0.406 Sum_probs=35.3
Q ss_pred cchHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEe
Q psy11601 14 QDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSG 57 (82)
Q Consensus 14 ~~~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~g 57 (82)
+...+.|+++++..|++++.+-.-.+.+.+..+.++|||.++++
T Consensus 120 ~~~~~~i~~ik~~~p~v~Vi~G~v~t~~~A~~l~~aGaD~I~vg 163 (325)
T cd00381 120 VYVIEMIKFIKKKYPNVDVIAGNVVTAEAARDLIDAGADGVKVG 163 (325)
T ss_pred HHHHHHHHHHHHHCCCceEEECCCCCHHHHHHHHhcCCCEEEEC
Confidence 45677788888877667777745566799999999999999973
No 273
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=94.13 E-value=0.11 Score=36.17 Aligned_cols=46 Identities=22% Similarity=0.162 Sum_probs=34.8
Q ss_pred hHHHHHHHHHhCCCCcEEEEcCCC-cccHHHHHHc--CCCEEEEeccccC
Q psy11601 16 MMPKVKWLRENYPTLNIEVDGGVG-PNTIDECAKA--GANWIVSGTAVIN 62 (82)
Q Consensus 16 ~~~ki~~~~~~~~~~~i~~dGGI~-~~ni~~~~~~--Gad~vv~gs~i~~ 62 (82)
.++-++++++. .++|+.+.||++ .+.+.++.+. |....++|.+||.
T Consensus 189 dlel~~~l~~~-~~ipVIASGGv~s~eDi~~l~~~~~g~~~aIvG~Alf~ 237 (253)
T TIGR02129 189 DEELVSKLGEW-SPIPITYAGGAKSIDDLDLVDELSKGKVDLTIGSALDI 237 (253)
T ss_pred CHHHHHHHHhh-CCCCEEEECCCCCHHHHHHHHHhcCCCCcEEeeehHHH
Confidence 45666666666 379999999995 6778777554 6777999999875
No 274
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=94.02 E-value=0.055 Score=36.59 Aligned_cols=50 Identities=18% Similarity=0.173 Sum_probs=34.1
Q ss_pred CCcchHHHHHHHHHhCCCCc----EEEEcCC-------CcccHHHHHHcCC--CEEEEeccccC
Q psy11601 12 FMQDMMPKVKWLRENYPTLN----IEVDGGV-------GPNTIDECAKAGA--NWIVSGTAVIN 62 (82)
Q Consensus 12 ~~~~~~~ki~~~~~~~~~~~----i~~dGGI-------~~~ni~~~~~~Ga--d~vv~gs~i~~ 62 (82)
......+.++++.+.. ++| |.+.||+ +.+.+.+++++|| -+++.|..||+
T Consensus 173 ~t~~~~~~~~~~~~~~-~~p~~~~Vk~sGGi~~~~~~~~l~~a~~~i~aGa~~~G~~~Gr~i~q 235 (236)
T PF01791_consen 173 ATPEDVELMRKAVEAA-PVPGKVGVKASGGIDAEDFLRTLEDALEFIEAGADRIGTSSGRNIWQ 235 (236)
T ss_dssp SHHHHHHHHHHHHHTH-SSTTTSEEEEESSSSHHHHHHSHHHHHHHHHTTHSEEEEEEHHHHHT
T ss_pred ccHHHHHHHHHHHHhc-CCCcceEEEEeCCCChHHHHHHHHHHHHHHHcCChhHHHHHHHHHHc
Confidence 3334455555554432 356 9999999 3445556779999 88888888885
No 275
>PRK15492 triosephosphate isomerase; Provisional
Probab=93.96 E-value=0.21 Score=34.82 Aligned_cols=63 Identities=13% Similarity=0.088 Sum_probs=44.4
Q ss_pred CCCCCCCCc----chHHHHHHH-HHh----CCCCcEEEEcCCCcccHHHHH-HcCCCEEEEeccccCCCCHHH
Q psy11601 6 GFGGQKFMQ----DMMPKVKWL-REN----YPTLNIEVDGGVGPNTIDECA-KAGANWIVSGTAVINCPDRIQ 68 (82)
Q Consensus 6 G~~gq~~~~----~~~~ki~~~-~~~----~~~~~i~~dGGI~~~ni~~~~-~~Gad~vv~gs~i~~~~d~~~ 68 (82)
|.+|..-.+ +..+.||+. .+. .++++|.-=|+|+++|+.++. ...+|++-+|++=..+++..+
T Consensus 180 Gtgg~~as~e~~~~~~~~Ir~~l~~~~~~~~~~irILYGGSV~~~N~~~l~~~~diDG~LvG~aSl~~~~F~~ 252 (260)
T PRK15492 180 GEAGIPASADYADEKHAVIKQCLIELFGDAGDDIPVFYGGSVNAENANELFGQPHIDGLFIGRSAWDADKFFA 252 (260)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHhccccCceeEEEcCccCHHHHHHHhcCCCCCEEEeehhhcCHHHHHH
Confidence 445666666 445556653 332 236899999999999999985 455999999998776554443
No 276
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=93.60 E-value=0.19 Score=36.61 Aligned_cols=48 Identities=21% Similarity=0.302 Sum_probs=37.7
Q ss_pred CCCCcchHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEe
Q psy11601 10 QKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSG 57 (82)
Q Consensus 10 q~~~~~~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~g 57 (82)
+-.+...++.|+++++.+|+.+|.+=-=.+.+-...|..+|||.+-+|
T Consensus 132 hGhs~~~i~~ik~ik~~~P~~~vIaGNV~T~e~a~~Li~aGAD~vKVG 179 (346)
T PRK05096 132 NGYSEHFVQFVAKAREAWPDKTICAGNVVTGEMVEELILSGADIVKVG 179 (346)
T ss_pred CCcHHHHHHHHHHHHHhCCCCcEEEecccCHHHHHHHHHcCCCEEEEc
Confidence 455678889999999998877644433358888999999999998655
No 277
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=93.53 E-value=0.16 Score=38.16 Aligned_cols=34 Identities=26% Similarity=0.377 Sum_probs=30.3
Q ss_pred CCcEEEEcCCC-cccHHHHHHcCCCEEEEeccccC
Q psy11601 29 TLNIEVDGGVG-PNTIDECAKAGANWIVSGTAVIN 62 (82)
Q Consensus 29 ~~~i~~dGGI~-~~ni~~~~~~Gad~vv~gs~i~~ 62 (82)
.+|+.+||||+ ...+...+.+||+.+.+|+.+-+
T Consensus 328 ~~~viadGgi~~~~di~kala~GA~~vm~g~~~ag 362 (475)
T TIGR01303 328 GGHVWADGGVRHPRDVALALAAGASNVMVGSWFAG 362 (475)
T ss_pred CCcEEEeCCCCCHHHHHHHHHcCCCEEeechhhcc
Confidence 68999999996 57888888999999999999876
No 278
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=93.51 E-value=0.21 Score=33.80 Aligned_cols=45 Identities=20% Similarity=0.373 Sum_probs=39.2
Q ss_pred CcchHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEe
Q psy11601 13 MQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSG 57 (82)
Q Consensus 13 ~~~~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~g 57 (82)
.|+.++-|+++++.+|++.|-+..=++.+.++...++||+++++-
T Consensus 50 ~~~~~~~I~~l~~~~p~~~IGAGTVl~~~~a~~a~~aGA~FivsP 94 (212)
T PRK05718 50 TPAALEAIRLIAKEVPEALIGAGTVLNPEQLAQAIEAGAQFIVSP 94 (212)
T ss_pred CccHHHHHHHHHHHCCCCEEEEeeccCHHHHHHHHHcCCCEEECC
Confidence 467888899999888888888888899999999999999998764
No 279
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=93.46 E-value=0.21 Score=36.33 Aligned_cols=47 Identities=23% Similarity=0.420 Sum_probs=37.7
Q ss_pred CCCCcchHHHHHHHHHhCCCCcEEEEc-CCCcccHHHHHHcCCCEEEEe
Q psy11601 10 QKFMQDMMPKVKWLRENYPTLNIEVDG-GVGPNTIDECAKAGANWIVSG 57 (82)
Q Consensus 10 q~~~~~~~~ki~~~~~~~~~~~i~~dG-GI~~~ni~~~~~~Gad~vv~g 57 (82)
+-.+...++.|+++|+..|+ +.++.| =.+++....+..+|||.+.+|
T Consensus 131 hGhs~~~i~~ik~ir~~~p~-~~viaGNV~T~e~a~~Li~aGAD~ikVg 178 (343)
T TIGR01305 131 NGYSEHFVEFVKLVREAFPE-HTIMAGNVVTGEMVEELILSGADIVKVG 178 (343)
T ss_pred CCcHHHHHHHHHHHHhhCCC-CeEEEecccCHHHHHHHHHcCCCEEEEc
Confidence 44567788999999998765 455555 368999999999999999877
No 280
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=93.37 E-value=0.44 Score=35.77 Aligned_cols=57 Identities=18% Similarity=0.179 Sum_probs=42.8
Q ss_pred HHHHHHHHhCC-CCcEEEEcCCCc-ccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHH
Q psy11601 18 PKVKWLRENYP-TLNIEVDGGVGP-NTIDECAKAGANWIVSGTAVINCPDRIQAISTLKS 75 (82)
Q Consensus 18 ~ki~~~~~~~~-~~~i~~dGGI~~-~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~ 75 (82)
+.-.++....| ++.+++-+||+- +.+..+.. |+|.|.+|+++.+++||.+.+++|..
T Consensus 198 ~~~~~l~~~ip~~~~~vseSGI~t~~d~~~~~~-~~davLiG~~lm~~~d~~~~~~~L~~ 256 (454)
T PRK09427 198 NRTRELAPLIPADVIVISESGIYTHAQVRELSP-FANGFLIGSSLMAEDDLELAVRKLIL 256 (454)
T ss_pred HHHHHHHhhCCCCcEEEEeCCCCCHHHHHHHHh-cCCEEEECHHHcCCCCHHHHHHHHhc
Confidence 33344444443 455677789874 77877755 79999999999999999999988854
No 281
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=93.23 E-value=0.089 Score=35.63 Aligned_cols=51 Identities=25% Similarity=0.444 Sum_probs=35.2
Q ss_pred CCCCCCCCCcchHHHHHHHHHhC-CCCcEEEEcCCC-cccHHHHHHcCCCEEEEec
Q psy11601 5 PGFGGQKFMQDMMPKVKWLRENY-PTLNIEVDGGVG-PNTIDECAKAGANWIVSGT 58 (82)
Q Consensus 5 pG~~gq~~~~~~~~ki~~~~~~~-~~~~i~~dGGI~-~~ni~~~~~~Gad~vv~gs 58 (82)
.||.+.. ...+.++.+++.. .+++|-+.|||+ .+.+.++.++|++.+-..+
T Consensus 153 TGf~~~g---at~~dv~~m~~~v~~~v~IKaaGGirt~~~a~~~i~aGa~riGts~ 205 (211)
T TIGR00126 153 TGFGAGG---ATVEDVRLMRNTVGDTIGVKASGGVRTAEDAIAMIEAGASRIGASA 205 (211)
T ss_pred CCCCCCC---CCHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHHHhhHHhCcch
Confidence 5665444 3444445444432 368999999998 6778899999999886543
No 282
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=93.21 E-value=0.26 Score=35.84 Aligned_cols=35 Identities=20% Similarity=0.331 Sum_probs=29.9
Q ss_pred CCCcEEEEcCCCc-ccHHHHHHcCCCEEEEeccccC
Q psy11601 28 PTLNIEVDGGVGP-NTIDECAKAGANWIVSGTAVIN 62 (82)
Q Consensus 28 ~~~~i~~dGGI~~-~ni~~~~~~Gad~vv~gs~i~~ 62 (82)
+..||.+||||+- .++...+.+|||.+.+||.+-+
T Consensus 212 ~gvpiIADGGi~~sGDI~KAlaaGAd~VMlGsllAG 247 (346)
T PRK05096 212 LGGQIVSDGGCTVPGDVAKAFGGGADFVMLGGMLAG 247 (346)
T ss_pred cCCCEEecCCcccccHHHHHHHcCCCEEEeChhhcC
Confidence 3689999999964 5777778899999999999876
No 283
>PTZ00333 triosephosphate isomerase; Provisional
Probab=92.94 E-value=0.4 Score=33.37 Aligned_cols=62 Identities=19% Similarity=0.287 Sum_probs=43.3
Q ss_pred CCCCCcchHHHHHH-HHH----h-----CCCCcEEEEcCCCcccHHHH-HHcCCCEEEEeccccCCCCHHHHHH
Q psy11601 9 GQKFMQDMMPKVKW-LRE----N-----YPTLNIEVDGGVGPNTIDEC-AKAGANWIVSGTAVINCPDRIQAIS 71 (82)
Q Consensus 9 gq~~~~~~~~ki~~-~~~----~-----~~~~~i~~dGGI~~~ni~~~-~~~Gad~vv~gs~i~~~~d~~~~~~ 71 (82)
|+.-.|+.++++.+ +|+ . .++++|.-=|+|+++|+.++ ...++|++-+|++... +++.+-++
T Consensus 177 g~~a~~e~i~~~~~~IR~~l~~~~~~~~~~~~~ILYGGSV~~~N~~~l~~~~~vDG~LvG~asl~-~~f~~Ii~ 249 (255)
T PTZ00333 177 GKVATPEQAQEVHAFIRKWLAEKVGADVAEATRIIYGGSVNEKNCKELIKQPDIDGFLVGGASLK-PDFVDIIK 249 (255)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhhcccccccceEEEcCCCCHHHHHHHhcCCCCCEEEEehHhhh-hhHHHHHH
Confidence 55556666655443 333 1 23589999999999999876 4678999999999886 35544443
No 284
>PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional
Probab=92.93 E-value=0.42 Score=36.94 Aligned_cols=67 Identities=15% Similarity=0.214 Sum_probs=42.8
Q ss_pred CCCCCCCCcchHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHH-cCCC--EEEEeccccCC---CCHHHHHHHHHHHHHH
Q psy11601 6 GFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAK-AGAN--WIVSGTAVINC---PDRIQAISTLKSSVQK 79 (82)
Q Consensus 6 G~~gq~~~~~~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~-~Gad--~vv~gs~i~~~---~d~~~~~~~l~~~~~~ 79 (82)
|-.|+.|.-+.+ +.+ ....|+...|||+++|+.++++ ..+. +|=+.|.+=.. .|+ +.+++|.+.+++
T Consensus 142 GGtG~~fdw~~~---~~~---~~~~p~iLAGGL~peNV~~ai~~~~p~~~gVDvsSGvE~~pG~KD~-~ki~~fi~~~k~ 214 (610)
T PRK13803 142 GGSGKSFDWEKF---YNY---NFKFPFFLSGGLSPTNFDRIINLTHPQILGIDVSSGFEDSPGNKKL-TLLKSFITNVKK 214 (610)
T ss_pred CCCCCccChHHh---hhc---ccCCcEEEEeCCCHHHHHHHHhhhCCCceEEEccCcccCCCCCcCH-HHHHHHHHHHHH
Confidence 455677765443 222 2246899999999999999887 3445 66667777643 354 355555555543
No 285
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=92.82 E-value=0.097 Score=38.25 Aligned_cols=34 Identities=21% Similarity=0.444 Sum_probs=30.2
Q ss_pred CCcEEEEcCCC-cccHHHHHHcCCCEEEEeccccC
Q psy11601 29 TLNIEVDGGVG-PNTIDECAKAGANWIVSGTAVIN 62 (82)
Q Consensus 29 ~~~i~~dGGI~-~~ni~~~~~~Gad~vv~gs~i~~ 62 (82)
.+||.++|||. ...+...+.+|||.+.+|+.+..
T Consensus 255 ~vpVIAdGGI~tg~di~kAlAlGAdaV~iGt~~a~ 289 (369)
T TIGR01304 255 YVHVIADGGIETSGDLVKAIACGADAVVLGSPLAR 289 (369)
T ss_pred CceEEEeCCCCCHHHHHHHHHcCCCEeeeHHHHHh
Confidence 38999999995 57888889999999999999876
No 286
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=92.64 E-value=0.27 Score=33.46 Aligned_cols=54 Identities=22% Similarity=0.382 Sum_probs=39.5
Q ss_pred cCCCCCCCCCCcchHHHHHHHHHhC-CCCcEEEEcCCC-cccHHHHHHcCCCEEEEecc
Q psy11601 3 VEPGFGGQKFMQDMMPKVKWLRENY-PTLNIEVDGGVG-PNTIDECAKAGANWIVSGTA 59 (82)
Q Consensus 3 v~pG~~gq~~~~~~~~ki~~~~~~~-~~~~i~~dGGI~-~~ni~~~~~~Gad~vv~gs~ 59 (82)
.++||.. ....++.++.+++.. .+++|-+.|||+ .+.+.+++++||+.+-..+.
T Consensus 155 TsTG~~~---~gat~~~v~~m~~~~~~~~~IKasGGIrt~~~a~~~i~aGA~riGtS~~ 210 (221)
T PRK00507 155 TSTGFST---GGATVEDVKLMRETVGPRVGVKASGGIRTLEDALAMIEAGATRLGTSAG 210 (221)
T ss_pred cCCCCCC---CCCCHHHHHHHHHHhCCCceEEeeCCcCCHHHHHHHHHcCcceEccCcH
Confidence 3567742 225666667766653 469999999995 67888999999999877644
No 287
>PF00121 TIM: Triosephosphate isomerase; InterPro: IPR000652 Triosephosphate isomerase (5.3.1.1 from EC) (TIM) [] is the glycolytic enzyme that catalyses the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. TIM plays an important role in several metabolic pathways and is essential for efficient energy production. It is present in eukaryotes as well as in prokaryotes. TIM is a dimer of identical subunits, each of which is made up of about 250 amino-acid residues. A glutamic acid residue is involved in the catalytic mechanism [, ]. The tertiary structure of TIM has eight beta/alpha motifs folded into a barrel structure. The TIM barrel fold occurs ubiquitously and is found in numerous other enzymes that can be involved in energy metabolism, macromolecule metabolism, or small molecule metabolism []. The sequence around the active site residue is perfectly conserved in all known TIM's. Deficiencies in TIM are associated with haemolytic anaemia coupled with a progressive, severe neurological disorder [].; GO: 0004807 triose-phosphate isomerase activity, 0008152 metabolic process; PDB: 2YPI_A 1YPI_A 1NEY_B 1NF0_B 1I45_A 7TIM_A 3YPI_B 2H6R_H 2Y63_A 1N55_A ....
Probab=92.50 E-value=0.22 Score=34.39 Aligned_cols=59 Identities=19% Similarity=0.297 Sum_probs=41.1
Q ss_pred CCCCCcchHHHHHH-HHHh---------CCCCcEEEEcCCCcccHHHHH-HcCCCEEEEeccccCCCCHH
Q psy11601 9 GQKFMQDMMPKVKW-LREN---------YPTLNIEVDGGVGPNTIDECA-KAGANWIVSGTAVINCPDRI 67 (82)
Q Consensus 9 gq~~~~~~~~ki~~-~~~~---------~~~~~i~~dGGI~~~ni~~~~-~~Gad~vv~gs~i~~~~d~~ 67 (82)
|+.-.++..+++.+ +|+. ..+++|.-=|+++++|+.++. ..++|++-+|++-.++++..
T Consensus 172 G~~as~~~~~~~~~~Ir~~l~~~~~~~~~~~~~ILYGGSV~~~N~~~l~~~~~iDG~LVG~asl~~~~F~ 241 (244)
T PF00121_consen 172 GKTASPEQIQEVHAFIREILAELYGEEVANNIRILYGGSVNPENAAELLSQPDIDGVLVGGASLKAESFL 241 (244)
T ss_dssp SS-CCHHHHHHHHHHHHHHHHHHTHHHHHHHSEEEEESSESTTTHHHHHTSTT-SEEEESGGGGSTHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhccccccCceeEEECCcCCcccHHHHhcCCCCCEEEEchhhhcccchh
Confidence 55555555554433 3332 235899999999999999885 68999999999988766543
No 288
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=92.39 E-value=0.33 Score=35.40 Aligned_cols=48 Identities=15% Similarity=0.286 Sum_probs=38.0
Q ss_pred CCCCcchHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEe
Q psy11601 10 QKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSG 57 (82)
Q Consensus 10 q~~~~~~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~g 57 (82)
+-..+..++.++++++.+|+++|.+=.=.+.+-...|..+|||.+-+|
T Consensus 130 ~g~s~~~~~~ik~ik~~~~~~~viaGNV~T~e~a~~L~~aGad~vkVG 177 (352)
T PF00478_consen 130 HGHSEHVIDMIKKIKKKFPDVPVIAGNVVTYEGAKDLIDAGADAVKVG 177 (352)
T ss_dssp STTSHHHHHHHHHHHHHSTTSEEEEEEE-SHHHHHHHHHTT-SEEEES
T ss_pred CccHHHHHHHHHHHHHhCCCceEEecccCCHHHHHHHHHcCCCEEEEe
Confidence 345667888899999998877776555578899999999999999998
No 289
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=92.37 E-value=0.3 Score=35.16 Aligned_cols=45 Identities=18% Similarity=0.368 Sum_probs=34.6
Q ss_pred CCcchHHHHHHHHHhCCCCcEEE-EcCCCcccHHHHHHcCCCEEEEe
Q psy11601 12 FMQDMMPKVKWLRENYPTLNIEV-DGGVGPNTIDECAKAGANWIVSG 57 (82)
Q Consensus 12 ~~~~~~~ki~~~~~~~~~~~i~~-dGGI~~~ni~~~~~~Gad~vv~g 57 (82)
......+-|+++++..|+.++.+ +=+ +.+.+..+.++|+|.+.+|
T Consensus 123 h~~~~~e~I~~ir~~~p~~~vi~g~V~-t~e~a~~l~~aGad~i~vg 168 (326)
T PRK05458 123 HSDSVINMIQHIKKHLPETFVIAGNVG-TPEAVRELENAGADATKVG 168 (326)
T ss_pred chHHHHHHHHHHHhhCCCCeEEEEecC-CHHHHHHHHHcCcCEEEEC
Confidence 34456666888998887777666 223 8999999999999998866
No 290
>cd08207 RLP_NonPhot Ribulose bisphosphate carboxylase like proteins from nonphototrophic bacteria. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions. The specific function of this subgroup is unknown.
Probab=92.27 E-value=1.4 Score=32.80 Aligned_cols=77 Identities=8% Similarity=0.032 Sum_probs=53.1
Q ss_pred CCCCCCCC-CCcchHHHHHHHHHh-----CCCCcEEEEcCCCcccHHHH-HHcC-CCEEEE-eccccC-CCCHHHHHHHH
Q psy11601 4 EPGFGGQK-FMQDMMPKVKWLREN-----YPTLNIEVDGGVGPNTIDEC-AKAG-ANWIVS-GTAVIN-CPDRIQAISTL 73 (82)
Q Consensus 4 ~pG~~gq~-~~~~~~~ki~~~~~~-----~~~~~i~~dGGI~~~ni~~~-~~~G-ad~vv~-gs~i~~-~~d~~~~~~~l 73 (82)
-|++.|.. +.++....+.+.... ...+-=+..||+++..++++ ...| .|.+.. |..|++ ++.+++-++.+
T Consensus 300 ~~~~~Gkf~~~~~~~~~~~~~~~~p~~~~~k~~~Pv~sgG~~~~~vp~~~~~~G~~Dvi~~aGGGi~gHP~G~~aGa~A~ 379 (406)
T cd08207 300 VNGLASKFWESDDSVIESARACLTPLGGPDDAAMPVFSSGQWGGQAPPTYRRLGSVDLLYLAGGGIMAHPDGPAAGVRSL 379 (406)
T ss_pred cCCCcCCcCCCcHHHHHHHHHHhCchhccCCCeeEeccCCCCHhHHHHHHHHhCCCceEEecCCceecCCCCchhHHHHH
Confidence 46666653 445444455443321 12344678999999999966 5677 588777 688999 57799999999
Q ss_pred HHHHHHh
Q psy11601 74 KSSVQKY 80 (82)
Q Consensus 74 ~~~~~~~ 80 (82)
++.++..
T Consensus 380 rqA~ea~ 386 (406)
T cd08207 380 RQAWEAA 386 (406)
T ss_pred HHHHHHH
Confidence 9988753
No 291
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=91.95 E-value=0.59 Score=34.11 Aligned_cols=52 Identities=17% Similarity=0.360 Sum_probs=41.3
Q ss_pred HHHHHHhCCCCcEEEEcC-CCcccHHHHHHcC-CCEEEEeccccCCCCHHHHHHH
Q psy11601 20 VKWLRENYPTLNIEVDGG-VGPNTIDECAKAG-ANWIVSGTAVINCPDRIQAIST 72 (82)
Q Consensus 20 i~~~~~~~~~~~i~~dGG-I~~~ni~~~~~~G-ad~vv~gs~i~~~~d~~~~~~~ 72 (82)
..+++... ..|+.+.|+ -+++.+.++++.| ||.|.+|+.+...+|+...+++
T Consensus 280 a~~i~~~~-~~pvi~~G~i~~~~~Ae~~l~~g~aDlVa~gR~~ladP~~~~k~~~ 333 (363)
T COG1902 280 AARIKKAV-RIPVIAVGGINDPEQAEEILASGRADLVAMGRPFLADPDLVLKAAE 333 (363)
T ss_pred HHHHHHhc-CCCEEEeCCCCCHHHHHHHHHcCCCCEEEechhhhcCccHHHHHHc
Confidence 44455544 489999996 4788999999998 9999999999988888766643
No 292
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=91.92 E-value=0.45 Score=36.08 Aligned_cols=46 Identities=17% Similarity=0.256 Sum_probs=37.6
Q ss_pred CCcchHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEe
Q psy11601 12 FMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSG 57 (82)
Q Consensus 12 ~~~~~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~g 57 (82)
.....++.|+++++..|+.+|++-+=.+.+....+.++|||.+++|
T Consensus 272 ~~~~~~~~i~~ik~~~p~~~vi~g~v~t~e~a~~a~~aGaD~i~vg 317 (505)
T PLN02274 272 DSIYQLEMIKYIKKTYPELDVIGGNVVTMYQAQNLIQAGVDGLRVG 317 (505)
T ss_pred CcHHHHHHHHHHHHhCCCCcEEEecCCCHHHHHHHHHcCcCEEEEC
Confidence 4456678899999988777776666678999999999999999875
No 293
>PLN02363 phosphoribosylanthranilate isomerase
Probab=91.90 E-value=0.57 Score=32.61 Aligned_cols=49 Identities=18% Similarity=0.267 Sum_probs=35.1
Q ss_pred CCcEEEEcCCCcccHHHHHH-cCCCEEEEeccccCC----CCHHHHHHHHHHHHH
Q psy11601 29 TLNIEVDGGVGPNTIDECAK-AGANWIVSGTAVINC----PDRIQAISTLKSSVQ 78 (82)
Q Consensus 29 ~~~i~~dGGI~~~ni~~~~~-~Gad~vv~gs~i~~~----~d~~~~~~~l~~~~~ 78 (82)
..|+...||++++|+.+... .++.++=+.|.+=.. .|+ +.+++|.+.++
T Consensus 199 ~~p~iLAGGL~peNV~~ai~~~~P~GVDVsSGVE~~pG~~KD~-~KI~~fv~~vr 252 (256)
T PLN02363 199 RNGWLLAGGLTPENVHEAVSLLKPTGVDVSSGICGPDGIRKDP-SKISSFISAVK 252 (256)
T ss_pred CCCEEEECCCCHHHHHHHHHhcCCcEEEeCCcccCCCCcccCH-HHHHHHHHHHH
Confidence 35899999999999999875 688888888887543 333 35555555544
No 294
>KOG2550|consensus
Probab=91.50 E-value=0.38 Score=36.13 Aligned_cols=49 Identities=24% Similarity=0.322 Sum_probs=42.4
Q ss_pred CCCCCcchHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEe
Q psy11601 9 GQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSG 57 (82)
Q Consensus 9 gq~~~~~~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~g 57 (82)
.|--+...++.|+.+++.+|++.|.+--.++.+-.+.|+.+|||++=+|
T Consensus 272 SqGnS~~qiemik~iK~~yP~l~ViaGNVVT~~qa~nLI~aGaDgLrVG 320 (503)
T KOG2550|consen 272 SQGNSIYQLEMIKYIKETYPDLQIIAGNVVTKEQAANLIAAGADGLRVG 320 (503)
T ss_pred CCCcchhHHHHHHHHHhhCCCceeeccceeeHHHHHHHHHccCceeEec
Confidence 4667778899999999999888777777789999999999999998766
No 295
>PF13277 YmdB: YmdB-like protein; PDB: 2CV9_B 2Z06_C.
Probab=91.45 E-value=0.29 Score=34.23 Aligned_cols=55 Identities=22% Similarity=0.357 Sum_probs=35.3
Q ss_pred HHHHHHHHHhCCCCcEEEE--------cCCCcccHHHHHHcCCCEEEEeccccCCCCHHHHHHH
Q psy11601 17 MPKVKWLRENYPTLNIEVD--------GGVGPNTIDECAKAGANWIVSGTAVINCPDRIQAIST 72 (82)
Q Consensus 17 ~~ki~~~~~~~~~~~i~~d--------GGI~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~ 72 (82)
.+.|.++++.+ ++.+++. =||+++...+|.++|+|.+-+|--+|...|+.+.+.+
T Consensus 16 ~~~Lp~L~~~~-~~DfVIaNgENaa~G~Git~~~~~~L~~~GvDviT~GNH~wdkkei~~~i~~ 78 (253)
T PF13277_consen 16 KEHLPELKEEY-GIDFVIANGENAAGGFGITPKIAEELFKAGVDVITMGNHIWDKKEIFDFIDK 78 (253)
T ss_dssp HHHHHHHGG---G-SEEEEE-TTTTTTSS--HHHHHHHHHHT-SEEE--TTTTSSTTHHHHHHH
T ss_pred HHHHHHHHhhc-CCCEEEECCcccCCCCCCCHHHHHHHHhcCCCEEecCcccccCcHHHHHHhc
Confidence 34456666653 3444443 2799999999999999999999999998887766654
No 296
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=91.40 E-value=1.5 Score=31.92 Aligned_cols=61 Identities=18% Similarity=0.267 Sum_probs=43.4
Q ss_pred hHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEe----ccccCCCCHHHHHHHHHHHH
Q psy11601 16 MMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSG----TAVINCPDRIQAISTLKSSV 77 (82)
Q Consensus 16 ~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~g----s~i~~~~d~~~~~~~l~~~~ 77 (82)
..+.|+++++.. +.||.+=|-.+++.+..+.++|+|.|++. +.+...+..-+.+.++.+.+
T Consensus 209 ~~~~l~~lr~~~-~~PvivKgv~~~~dA~~a~~~G~d~I~vsnhGGr~ld~~~~~~~~l~~i~~a~ 273 (351)
T cd04737 209 SPADIEFIAKIS-GLPVIVKGIQSPEDADVAINAGADGIWVSNHGGRQLDGGPASFDSLPEIAEAV 273 (351)
T ss_pred CHHHHHHHHHHh-CCcEEEecCCCHHHHHHHHHcCCCEEEEeCCCCccCCCCchHHHHHHHHHHHh
Confidence 567788888775 58999998889999999999999999983 33443333334444554433
No 297
>cd01570 NAPRTase_A Nicotinate phosphoribosyltransferase (NAPRTase), subgroup A. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products. This subgroup is present in bacteria and eukaryota (except funghi).
Probab=91.23 E-value=0.52 Score=33.79 Aligned_cols=37 Identities=16% Similarity=0.224 Sum_probs=32.9
Q ss_pred CCCcEEEEcCCCcccHHHHHHcC--CCEEEEeccccCCC
Q psy11601 28 PTLNIEVDGGVGPNTIDECAKAG--ANWIVSGTAVINCP 64 (82)
Q Consensus 28 ~~~~i~~dGGI~~~ni~~~~~~G--ad~vv~gs~i~~~~ 64 (82)
+++.|++.+|++.+.+.++.+.| +|.+-+|+.+.+..
T Consensus 277 ~~~~Iv~Sdgld~~~i~~l~~~g~~~d~fGvGt~L~~~~ 315 (327)
T cd01570 277 TKVKIVASNDLDEYTIAALNAQGAPIDAFGVGTRLVTSQ 315 (327)
T ss_pred CCcEEEEeCCCCHHHHHHHHHCCCeeEEEecCccccCCC
Confidence 56899999999999999999988 88999999988743
No 298
>COG3142 CutC Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism]
Probab=91.22 E-value=0.33 Score=33.62 Aligned_cols=48 Identities=21% Similarity=0.196 Sum_probs=35.9
Q ss_pred CCCCCcchHHHHHHHHHhC-CCCcEEEEcCCCcccHHHH-HHcCCCEEEE
Q psy11601 9 GQKFMQDMMPKVKWLRENY-PTLNIEVDGGVGPNTIDEC-AKAGANWIVS 56 (82)
Q Consensus 9 gq~~~~~~~~ki~~~~~~~-~~~~i~~dGGI~~~ni~~~-~~~Gad~vv~ 56 (82)
|..--.+.+++|+++.++. ..+.|.+-|||+++|+..+ ...|+.-+=.
T Consensus 150 g~~sa~eg~~~l~~li~~a~gri~Im~GaGV~~~N~~~l~~~tg~~e~H~ 199 (241)
T COG3142 150 GKASALEGLDLLKRLIEQAKGRIIIMAGAGVRAENIAELVLLTGVTEVHG 199 (241)
T ss_pred CcCchhhhHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHhcCchhhhh
Confidence 3344467778888876653 4688999999999999999 6777765533
No 299
>TIGR00419 tim triosephosphate isomerase. Triosephosphate isomerase (tim/TPIA) is the glycolytic enzyme that catalyzes the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. The active site of the enzyme is located between residues 240-258 of the model ([AV]-Y-E-P-[LIVM]-W-[SA]-I-G-T-[GK]) with E being the active site residue. There is a slight deviation from this sequence within the archeal members of this family.
Probab=91.09 E-value=0.47 Score=32.03 Aligned_cols=55 Identities=13% Similarity=0.117 Sum_probs=39.9
Q ss_pred CCCCCcchHHHHHHHHH----hCCCCcEEEEcCCCcccHHHHH-HcCCCEEEEeccccCC
Q psy11601 9 GQKFMQDMMPKVKWLRE----NYPTLNIEVDGGVGPNTIDECA-KAGANWIVSGTAVINC 63 (82)
Q Consensus 9 gq~~~~~~~~ki~~~~~----~~~~~~i~~dGGI~~~ni~~~~-~~Gad~vv~gs~i~~~ 63 (82)
|+.-.++..+.+.+..+ ..++++|.-=|+|+++|+.++. +.++|++-+|++..++
T Consensus 145 G~~as~~~~~~v~~~ir~~~~~~~~~~IlYGGSV~~~N~~~l~~~~~iDG~LvG~Asl~a 204 (205)
T TIGR00419 145 GIPVSPAQPEVVHGSVRAVKEVNESVRVLCGAGISTGEDAELAAQLGAEGVLLASGSLKA 204 (205)
T ss_pred CCCCCHHHHHHHHHHHHhhhhhcCCceEEEeCCCCHHHHHHHhcCCCCCEEEEeeeeecC
Confidence 44445555555554322 2346899999999999999874 6689999999987753
No 300
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=91.03 E-value=0.51 Score=35.78 Aligned_cols=34 Identities=24% Similarity=0.324 Sum_probs=28.8
Q ss_pred CCcEEEEcCCCc-ccHHHHHHcCCCEEEEeccccC
Q psy11601 29 TLNIEVDGGVGP-NTIDECAKAGANWIVSGTAVIN 62 (82)
Q Consensus 29 ~~~i~~dGGI~~-~ni~~~~~~Gad~vv~gs~i~~ 62 (82)
.+||.+||||+. ..+...+.+|||.+.+|+.+-+
T Consensus 352 ~~~viadgGir~~gdi~KAla~GA~~vm~G~~~ag 386 (502)
T PRK07107 352 YIPICSDGGIVYDYHMTLALAMGADFIMLGRYFAR 386 (502)
T ss_pred cceEEEcCCCCchhHHHHHHHcCCCeeeeChhhhc
Confidence 489999999975 4566777899999999999876
No 301
>PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=90.98 E-value=1.5 Score=30.31 Aligned_cols=68 Identities=15% Similarity=0.216 Sum_probs=50.8
Q ss_pred CCCCCCCCcchHHHHHHHH----------HhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHH
Q psy11601 6 GFGGQKFMQDMMPKVKWLR----------ENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINCPDRIQAISTLK 74 (82)
Q Consensus 6 G~~gq~~~~~~~~ki~~~~----------~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~ 74 (82)
|...+++.+..+.-|.+.. +.. ++|+...-|++.=+++....+||.++-+||++-+-+|..+.+..++
T Consensus 154 gtss~p~~~g~lglIekaapTLAaay~ISr~v-~iPVlcASGlS~vT~PmAiaaGAsGVGVGSavn~Ln~~~aMva~vr 231 (242)
T PF04481_consen 154 GTSSKPTSPGILGLIEKAAPTLAAAYAISRAV-SIPVLCASGLSAVTAPMAIAAGASGVGVGSAVNRLNDEVAMVAAVR 231 (242)
T ss_pred CCCCCCCCcchHHHHHHHhHHHHHHHHHHhcc-CCceEeccCcchhhHHHHHHcCCcccchhHHhhhcccHHHHHHHHH
Confidence 4455566666666665532 222 6999999999999999999999999999999998777654444443
No 302
>PRK08185 hypothetical protein; Provisional
Probab=90.86 E-value=2.4 Score=30.02 Aligned_cols=45 Identities=20% Similarity=0.254 Sum_probs=38.2
Q ss_pred hHHHHHHHHHhCCCCcEEEEcCC--CcccHHHHHHcCCCEEEEecccc
Q psy11601 16 MMPKVKWLRENYPTLNIEVDGGV--GPNTIDECAKAGANWIVSGTAVI 61 (82)
Q Consensus 16 ~~~ki~~~~~~~~~~~i~~dGGI--~~~ni~~~~~~Gad~vv~gs~i~ 61 (82)
.++.|+++++.. ++|++.-||+ ..+.++...+.|+.-|=+++.+.
T Consensus 186 ~~e~l~~I~~~~-~iPLVlHGgsg~~~e~~~~ai~~GI~KiNi~T~l~ 232 (283)
T PRK08185 186 QMDLLKEINERV-DIPLVLHGGSANPDAEIAESVQLGVGKINISSDMK 232 (283)
T ss_pred CHHHHHHHHHhh-CCCEEEECCCCCCHHHHHHHHHCCCeEEEeChHHH
Confidence 388888888775 6999999986 56889999999999999988875
No 303
>KOG2550|consensus
Probab=90.72 E-value=0.3 Score=36.64 Aligned_cols=45 Identities=18% Similarity=0.284 Sum_probs=35.1
Q ss_pred HHHHHHHHHhCCCCcEEEEcCC-CcccHHHHHHcCCCEEEEeccccC
Q psy11601 17 MPKVKWLRENYPTLNIEVDGGV-GPNTIDECAKAGANWIVSGTAVIN 62 (82)
Q Consensus 17 ~~ki~~~~~~~~~~~i~~dGGI-~~~ni~~~~~~Gad~vv~gs~i~~ 62 (82)
+=+..+....+ .+|+.+|||| +...+...+..||+.+.+|+.+-+
T Consensus 343 Vy~va~~A~q~-gvpviADGGiq~~Ghi~KAl~lGAstVMmG~lLAg 388 (503)
T KOG2550|consen 343 VYKVAEFANQF-GVPCIADGGIQNVGHVVKALGLGASTVMMGGLLAG 388 (503)
T ss_pred hhhHHHHHHhc-CCceeecCCcCccchhHhhhhcCchhheecceeee
Confidence 33455544444 5899999999 567888888999999999988765
No 304
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=90.52 E-value=0.71 Score=36.42 Aligned_cols=47 Identities=13% Similarity=0.208 Sum_probs=38.2
Q ss_pred HHHHHHhCCCCcEEEEcCC-CcccHHHHHHcC-CCEEEEeccccCCCCHH
Q psy11601 20 VKWLRENYPTLNIEVDGGV-GPNTIDECAKAG-ANWIVSGTAVINCPDRI 67 (82)
Q Consensus 20 i~~~~~~~~~~~i~~dGGI-~~~ni~~~~~~G-ad~vv~gs~i~~~~d~~ 67 (82)
.+++++.. ++|+.+.|+| +++.+.++++.| +|.|.+|+.+...+++.
T Consensus 679 ~~~ik~~~-~~pv~~~G~i~~~~~a~~~l~~g~~D~v~~gR~~l~dP~~~ 727 (765)
T PRK08255 679 ADRIRNEA-GIATIAVGAISEADHVNSIIAAGRADLCALARPHLADPAWT 727 (765)
T ss_pred HHHHHHHc-CCEEEEeCCCCCHHHHHHHHHcCCcceeeEcHHHHhCccHH
Confidence 34566654 5899999999 778899999866 99999999998877763
No 305
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=90.45 E-value=0.67 Score=33.75 Aligned_cols=47 Identities=19% Similarity=0.211 Sum_probs=34.2
Q ss_pred hHHHHHHHHHh--CCCCcEEEEcCCCc-ccHHHHHHcCCCEEEEeccccC
Q psy11601 16 MMPKVKWLREN--YPTLNIEVDGGVGP-NTIDECAKAGANWIVSGTAVIN 62 (82)
Q Consensus 16 ~~~ki~~~~~~--~~~~~i~~dGGI~~-~ni~~~~~~Gad~vv~gs~i~~ 62 (82)
.+.-+.+..+. .+.+||.+||||+. .++...+.+|||.+.+|+.+-+
T Consensus 197 qltAv~~~a~aa~~~~v~VIaDGGIr~~gDI~KALA~GAd~VMlG~llAG 246 (343)
T TIGR01305 197 QLSAVIECADAAHGLKGHIISDGGCTCPGDVAKAFGAGADFVMLGGMFAG 246 (343)
T ss_pred HHHHHHHHHHHhccCCCeEEEcCCcCchhHHHHHHHcCCCEEEECHhhhC
Confidence 45555554432 23689999999975 4677777899999999977765
No 306
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=90.32 E-value=0.89 Score=30.70 Aligned_cols=44 Identities=25% Similarity=0.413 Sum_probs=34.3
Q ss_pred CcchHHHHHHHHHhCCCCcEEEEcC-CCcccHHHHHHcCCCEEEEe
Q psy11601 13 MQDMMPKVKWLRENYPTLNIEVDGG-VGPNTIDECAKAGANWIVSG 57 (82)
Q Consensus 13 ~~~~~~ki~~~~~~~~~~~i~~dGG-I~~~ni~~~~~~Gad~vv~g 57 (82)
.|..++-|+++++.+|++. +-.|. .+.+.++...++||+++|+-
T Consensus 43 t~~a~~~i~~l~~~~~~~~-vGAGTVl~~~~a~~a~~aGA~FivsP 87 (204)
T TIGR01182 43 TPVALDAIRLLRKEVPDAL-IGAGTVLNPEQLRQAVDAGAQFIVSP 87 (204)
T ss_pred CccHHHHHHHHHHHCCCCE-EEEEeCCCHHHHHHHHHcCCCEEECC
Confidence 4778888999998877643 44444 57899999999999998654
No 307
>KOG0538|consensus
Probab=90.31 E-value=1.6 Score=31.71 Aligned_cols=67 Identities=22% Similarity=0.178 Sum_probs=49.2
Q ss_pred CCCCcchHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEec-cccCCCCHHHHHHHHHHHH
Q psy11601 10 QKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGT-AVINCPDRIQAISTLKSSV 77 (82)
Q Consensus 10 q~~~~~~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs-~i~~~~d~~~~~~~l~~~~ 77 (82)
|.-..-.++.|+.+++.- ++||++-|=.+.+.+....++|++++++.. .=-+-|...+++..|.+.+
T Consensus 205 ~id~Sl~W~Di~wLr~~T-~LPIvvKGilt~eDA~~Ave~G~~GIIVSNHGgRQlD~vpAtI~~L~Evv 272 (363)
T KOG0538|consen 205 QIDPSLSWKDIKWLRSIT-KLPIVVKGVLTGEDARKAVEAGVAGIIVSNHGGRQLDYVPATIEALPEVV 272 (363)
T ss_pred CCCCCCChhhhHHHHhcC-cCCeEEEeecccHHHHHHHHhCCceEEEeCCCccccCcccchHHHHHHHH
Confidence 333456788899999986 799999999999999999999999999873 2222233334555555544
No 308
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=90.28 E-value=0.82 Score=32.94 Aligned_cols=47 Identities=21% Similarity=0.409 Sum_probs=37.3
Q ss_pred CCCCcchHHHHHHHHHhCCCCcEEEEcCC-CcccHHHHHHcCCCEEEEe
Q psy11601 10 QKFMQDMMPKVKWLRENYPTLNIEVDGGV-GPNTIDECAKAGANWIVSG 57 (82)
Q Consensus 10 q~~~~~~~~ki~~~~~~~~~~~i~~dGGI-~~~ni~~~~~~Gad~vv~g 57 (82)
+-.+...++.|+++++..| .++.+.|+| +.+.+..+.++|||.+.++
T Consensus 118 hg~s~~~~~~i~~i~~~~p-~~~vi~GnV~t~e~a~~l~~aGad~I~V~ 165 (321)
T TIGR01306 118 HGHSNSVINMIKHIKTHLP-DSFVIAGNVGTPEAVRELENAGADATKVG 165 (321)
T ss_pred cCchHHHHHHHHHHHHhCC-CCEEEEecCCCHHHHHHHHHcCcCEEEEC
Confidence 4455678899999999874 566777744 6778889999999999877
No 309
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=90.16 E-value=3.2 Score=25.98 Aligned_cols=52 Identities=19% Similarity=0.176 Sum_probs=34.3
Q ss_pred HHHhCC-CCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHHHHH
Q psy11601 23 LRENYP-TLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINCPDRIQAISTLKSSVQK 79 (82)
Q Consensus 23 ~~~~~~-~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~~~~ 79 (82)
+++... ++++.+=|.+-.+...++.++|+|.+.- -..++.+.++.+.+.+.+
T Consensus 77 L~~~g~~~i~vivGG~~~~~~~~~l~~~Gvd~~~~-----~gt~~~~i~~~l~~~~~~ 129 (132)
T TIGR00640 77 LDKLGRPDILVVVGGVIPPQDFDELKEMGVAEIFG-----PGTPIPESAIFLLKKLRK 129 (132)
T ss_pred HHhcCCCCCEEEEeCCCChHhHHHHHHCCCCEEEC-----CCCCHHHHHHHHHHHHHH
Confidence 444333 4566665557777899999999987632 234677777777776644
No 310
>COG1411 Uncharacterized protein related to proFAR isomerase (HisA) [General function prediction only]
Probab=89.93 E-value=0.67 Score=31.72 Aligned_cols=55 Identities=20% Similarity=0.216 Sum_probs=39.6
Q ss_pred CCcchHHHHHHHHHhCCCCcEEEEcCCCc-ccHHHHHHcCCCEEEEeccccCCCCHHHHH
Q psy11601 12 FMQDMMPKVKWLRENYPTLNIEVDGGVGP-NTIDECAKAGANWIVSGTAVINCPDRIQAI 70 (82)
Q Consensus 12 ~~~~~~~ki~~~~~~~~~~~i~~dGGI~~-~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~ 70 (82)
|.++.+.++.+... -|+..-|||.. +.+..+...|++++.++++|+....|-+.+
T Consensus 168 ~~~E~l~~~~~~s~----~pVllGGGV~g~Edlel~~~~Gv~gvLvaTalh~G~vple~~ 223 (229)
T COG1411 168 PDYELLTKVLELSE----HPVLLGGGVGGMEDLELLLGMGVSGVLVATALHEGVVPLEVE 223 (229)
T ss_pred CCHHHHHHHHHhcc----CceeecCCcCcHHHHHHHhcCCCceeeehhhhhcCcCcHHHH
Confidence 55555555554433 47899999986 455555669999999999999877765444
No 311
>KOG1436|consensus
Probab=89.91 E-value=0.87 Score=33.28 Aligned_cols=65 Identities=25% Similarity=0.257 Sum_probs=51.0
Q ss_pred CCCCCCCCcchHHHHHHHHHh-CCCCcEEEEcCCCc-ccHHHHHHcCCCEEEEecccc-CCCCHHHHH
Q psy11601 6 GFGGQKFMQDMMPKVKWLREN-YPTLNIEVDGGVGP-NTIDECAKAGANWIVSGTAVI-NCPDRIQAI 70 (82)
Q Consensus 6 G~~gq~~~~~~~~ki~~~~~~-~~~~~i~~dGGI~~-~ni~~~~~~Gad~vv~gs~i~-~~~d~~~~~ 70 (82)
|-.|.+.-|-.++.++++..+ .+++||.-.|||+- +..-+-+.+||..+=+.+++. ..+-+.+.+
T Consensus 307 GLsG~plk~~st~~vR~mY~lt~g~IpiIG~GGV~SG~DA~EkiraGASlvQlyTal~yeGp~i~~kI 374 (398)
T KOG1436|consen 307 GLSGPPLKPISTNTVRAMYTLTRGKIPIIGCGGVSSGKDAYEKIRAGASLVQLYTALVYEGPAIIEKI 374 (398)
T ss_pred CCCCCccchhHHHHHHHHHHhccCCCceEeecCccccHhHHHHHhcCchHHHHHHHHhhcCchhHHHH
Confidence 456788889999999998875 57899999999964 567788999999999998864 344444444
No 312
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=89.85 E-value=0.87 Score=33.29 Aligned_cols=42 Identities=21% Similarity=0.436 Sum_probs=36.3
Q ss_pred chHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEe
Q psy11601 15 DMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSG 57 (82)
Q Consensus 15 ~~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~g 57 (82)
-.++.|+++++.. +.|+.+-|=++.+++..+.++|+|+|+++
T Consensus 223 ~~w~~i~~ir~~~-~~pviiKgV~~~eda~~a~~~G~d~I~VS 264 (361)
T cd04736 223 FNWQDLRWLRDLW-PHKLLVKGIVTAEDAKRCIELGADGVILS 264 (361)
T ss_pred CCHHHHHHHHHhC-CCCEEEecCCCHHHHHHHHHCCcCEEEEC
Confidence 3567899999886 57888889899999999999999999865
No 313
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=89.82 E-value=0.93 Score=34.23 Aligned_cols=45 Identities=20% Similarity=0.288 Sum_probs=35.3
Q ss_pred CcchHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEe
Q psy11601 13 MQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSG 57 (82)
Q Consensus 13 ~~~~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~g 57 (82)
....++.|+++++.+|+++|.+=-=.|.+....+.++|||.+-+|
T Consensus 252 ~~~~~~~i~~ik~~~p~~~v~agnv~t~~~a~~l~~aGad~v~vg 296 (479)
T PRK07807 252 QEKMLEALRAVRALDPGVPIVAGNVVTAEGTRDLVEAGADIVKVG 296 (479)
T ss_pred cHHHHHHHHHHHHHCCCCeEEeeccCCHHHHHHHHHcCCCEEEEC
Confidence 667788899999988776665523347888999999999999733
No 314
>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase
Probab=89.73 E-value=0.91 Score=33.28 Aligned_cols=43 Identities=26% Similarity=0.280 Sum_probs=38.3
Q ss_pred cchHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEe
Q psy11601 14 QDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSG 57 (82)
Q Consensus 14 ~~~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~g 57 (82)
.-..+.|+++++.- ++||.+=|=.+.+.+..+.++|+|+|++.
T Consensus 210 ~~tW~di~wlr~~~-~~PiivKgV~~~~dA~~a~~~Gvd~I~Vs 252 (367)
T PLN02493 210 TLSWKDVQWLQTIT-KLPILVKGVLTGEDARIAIQAGAAGIIVS 252 (367)
T ss_pred CCCHHHHHHHHhcc-CCCEEeecCCCHHHHHHHHHcCCCEEEEC
Confidence 34678899999876 68999999999999999999999999887
No 315
>PLN02979 glycolate oxidase
Probab=89.69 E-value=0.99 Score=33.14 Aligned_cols=44 Identities=25% Similarity=0.277 Sum_probs=38.6
Q ss_pred cchHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEec
Q psy11601 14 QDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGT 58 (82)
Q Consensus 14 ~~~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs 58 (82)
+-..+.|+++++.- ++||.+=|=.+.+.+..+.++|+|.|+++.
T Consensus 209 ~ltW~dl~wlr~~~-~~PvivKgV~~~~dA~~a~~~Gvd~I~Vsn 252 (366)
T PLN02979 209 TLSWKDVQWLQTIT-KLPILVKGVLTGEDARIAIQAGAAGIIVSN 252 (366)
T ss_pred CCCHHHHHHHHhcc-CCCEEeecCCCHHHHHHHHhcCCCEEEECC
Confidence 34678899999876 689999999999999999999999998873
No 316
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=89.59 E-value=1 Score=30.32 Aligned_cols=44 Identities=18% Similarity=0.277 Sum_probs=34.4
Q ss_pred CcchHHHHHHHHHhCCCCcEEEEcC-CCcccHHHHHHcCCCEEEEe
Q psy11601 13 MQDMMPKVKWLRENYPTLNIEVDGG-VGPNTIDECAKAGANWIVSG 57 (82)
Q Consensus 13 ~~~~~~ki~~~~~~~~~~~i~~dGG-I~~~ni~~~~~~Gad~vv~g 57 (82)
.|..++-|+++++.++++. .-.|. ++.+.++...++||+++|+=
T Consensus 39 tp~a~~~I~~l~~~~~~~~-vGAGTVl~~e~a~~ai~aGA~FivSP 83 (201)
T PRK06015 39 TPAALDAIRAVAAEVEEAI-VGAGTILNAKQFEDAAKAGSRFIVSP 83 (201)
T ss_pred CccHHHHHHHHHHHCCCCE-EeeEeCcCHHHHHHHHHcCCCEEECC
Confidence 4778888999988776643 44444 58899999999999998754
No 317
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=89.47 E-value=0.82 Score=33.06 Aligned_cols=42 Identities=17% Similarity=0.168 Sum_probs=33.4
Q ss_pred hHHHHHHHHHhCCCCcEEE---EcCCCcccHHHHHHcCCCEEEEec
Q psy11601 16 MMPKVKWLRENYPTLNIEV---DGGVGPNTIDECAKAGANWIVSGT 58 (82)
Q Consensus 16 ~~~ki~~~~~~~~~~~i~~---dGGI~~~ni~~~~~~Gad~vv~gs 58 (82)
.++.|+++++.. ++||.+ -.|.+.+.+..+.++|+|.++++.
T Consensus 174 ~le~i~~i~~~~-~vPVivK~~g~g~s~~~a~~l~~~Gvd~I~Vsg 218 (352)
T PRK05437 174 WLDNIAEIVSAL-PVPVIVKEVGFGISKETAKRLADAGVKAIDVAG 218 (352)
T ss_pred HHHHHHHHHHhh-CCCEEEEeCCCCCcHHHHHHHHHcCCCEEEECC
Confidence 446788887765 578776 356999999999999999999854
No 318
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=89.42 E-value=0.94 Score=32.32 Aligned_cols=42 Identities=19% Similarity=0.261 Sum_probs=32.9
Q ss_pred hHHHHHHHHHhCCCCcEEEEc---CCCcccHHHHHHcCCCEEEEec
Q psy11601 16 MMPKVKWLRENYPTLNIEVDG---GVGPNTIDECAKAGANWIVSGT 58 (82)
Q Consensus 16 ~~~ki~~~~~~~~~~~i~~dG---GI~~~ni~~~~~~Gad~vv~gs 58 (82)
.++.|+.+++.. ++||.+=+ |.+.+.+..+.++|+|.+++.+
T Consensus 166 ~~~~i~~l~~~~-~vPVivK~~g~g~s~~~a~~l~~~Gvd~I~vsG 210 (326)
T cd02811 166 WLERIEELVKAL-SVPVIVKEVGFGISRETAKRLADAGVKAIDVAG 210 (326)
T ss_pred HHHHHHHHHHhc-CCCEEEEecCCCCCHHHHHHHHHcCCCEEEECC
Confidence 446788887765 57877743 4889999999999999999754
No 319
>TIGR02127 pyrF_sub2 orotidine 5'-phosphate decarboxylase, subfamily 2. This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. See TIGR01740 for a related but distinct subfamily of the same enzyme.
Probab=89.36 E-value=1.3 Score=30.96 Aligned_cols=52 Identities=23% Similarity=0.258 Sum_probs=32.0
Q ss_pred HHHHHHHhCCCCcEEE-----EcCCCcccHHHHH-HcCCC-EEEEeccccCCCCHHHHHH
Q psy11601 19 KVKWLRENYPTLNIEV-----DGGVGPNTIDECA-KAGAN-WIVSGTAVINCPDRIQAIS 71 (82)
Q Consensus 19 ki~~~~~~~~~~~i~~-----dGGI~~~ni~~~~-~~Gad-~vv~gs~i~~~~d~~~~~~ 71 (82)
.++++|+..+++++.+ -|| +.+....+. ..|++ .+++|+.|+.+.||.+.++
T Consensus 200 e~~~iR~~~~~~~il~PGigaqG~-~~~d~~r~~~~~g~~~~ivvgR~I~~a~~p~~a~~ 258 (261)
T TIGR02127 200 DLLRLRIEMPTAPFLVPGFGAQGA-EAADLRGLFGADGSGLLINSSRGVLFAGPRSSALV 258 (261)
T ss_pred HHHHHHHhCCCCeEEeCCcCCCCC-CHHHHHHHhcccCCCEEEEcCHHHhcCCChHHHHH
Confidence 3445554444554333 233 455555544 35788 7999999999999876654
No 320
>COG1692 Calcineurin-like phosphoesterase [General function prediction only]
Probab=89.30 E-value=0.96 Score=31.78 Aligned_cols=54 Identities=19% Similarity=0.320 Sum_probs=39.6
Q ss_pred hHHHHHHHHHhCCCCcEEEEc--------CCCcccHHHHHHcCCCEEEEeccccCCCCHHHHH
Q psy11601 16 MMPKVKWLRENYPTLNIEVDG--------GVGPNTIDECAKAGANWIVSGTAVINCPDRIQAI 70 (82)
Q Consensus 16 ~~~ki~~~~~~~~~~~i~~dG--------GI~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~ 70 (82)
..+.|.++++.+ ++.+++.. ||+++...+++++|||.+-+|--.|..+|+-+-+
T Consensus 18 v~~~Lp~lk~ky-k~dfvI~N~ENaa~G~Git~k~y~~l~~~G~dviT~GNH~wd~~ei~~~i 79 (266)
T COG1692 18 VKEHLPQLKSKY-KIDFVIVNGENAAGGFGITEKIYKELLEAGADVITLGNHTWDQKEILDFI 79 (266)
T ss_pred HHHHhHHHHHhh-cCcEEEEcCccccCCcCCCHHHHHHHHHhCCCEEecccccccchHHHHHh
Confidence 344455566553 45555554 6899999999999999999999999877665443
No 321
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=89.25 E-value=1.2 Score=32.26 Aligned_cols=63 Identities=21% Similarity=0.276 Sum_probs=45.4
Q ss_pred CcchHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEecc----ccCCCCHHHHHHHHHHH
Q psy11601 13 MQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTA----VINCPDRIQAISTLKSS 76 (82)
Q Consensus 13 ~~~~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~----i~~~~d~~~~~~~l~~~ 76 (82)
.....+.|+++++.. +.|+.+=|-.+.+.+..+.++|+|.|++... +-....+...+.++.+.
T Consensus 198 ~~~~~~~i~~l~~~~-~~PvivKgv~~~~dA~~a~~~G~d~I~vsnhgG~~~d~~~~~~~~L~~i~~~ 264 (344)
T cd02922 198 PTLTWDDIKWLRKHT-KLPIVLKGVQTVEDAVLAAEYGVDGIVLSNHGGRQLDTAPAPIEVLLEIRKH 264 (344)
T ss_pred CCCCHHHHHHHHHhc-CCcEEEEcCCCHHHHHHHHHcCCCEEEEECCCcccCCCCCCHHHHHHHHHHH
Confidence 345678899998876 5899998888999999999999999998742 11123344455555543
No 322
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=89.24 E-value=1 Score=33.20 Aligned_cols=62 Identities=21% Similarity=0.279 Sum_probs=45.1
Q ss_pred chHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEecc----ccCCCCHHHHHHHHHHHH
Q psy11601 15 DMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTA----VINCPDRIQAISTLKSSV 77 (82)
Q Consensus 15 ~~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~----i~~~~d~~~~~~~l~~~~ 77 (82)
-.++.|+++++.. +.|+.+=|=.+.+.+..+.++|+|.|++... +-....+...+.++++.+
T Consensus 240 ~tW~~i~~lr~~~-~~pvivKgV~~~~dA~~a~~~G~d~I~vsnhGGr~~d~~~~t~~~L~ei~~~~ 305 (383)
T cd03332 240 LTWEDLAFLREWT-DLPIVLKGILHPDDARRAVEAGVDGVVVSNHGGRQVDGSIAALDALPEIVEAV 305 (383)
T ss_pred CCHHHHHHHHHhc-CCCEEEecCCCHHHHHHHHHCCCCEEEEcCCCCcCCCCCcCHHHHHHHHHHHh
Confidence 4578899999876 5899999999999999999999999997621 211223344555555443
No 323
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=89.14 E-value=1 Score=30.21 Aligned_cols=45 Identities=22% Similarity=0.392 Sum_probs=32.6
Q ss_pred CcchHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEe
Q psy11601 13 MQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSG 57 (82)
Q Consensus 13 ~~~~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~g 57 (82)
.|..++-|+++++.+|++.|=+=.=++.+.++...++||+++|+=
T Consensus 43 t~~a~~~I~~l~~~~p~~~vGAGTV~~~e~a~~a~~aGA~FivSP 87 (196)
T PF01081_consen 43 TPNALEAIEALRKEFPDLLVGAGTVLTAEQAEAAIAAGAQFIVSP 87 (196)
T ss_dssp STTHHHHHHHHHHHHTTSEEEEES--SHHHHHHHHHHT-SEEEES
T ss_pred CccHHHHHHHHHHHCCCCeeEEEeccCHHHHHHHHHcCCCEEECC
Confidence 367788888888877776444434458899999999999998764
No 324
>PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related. These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A ....
Probab=88.79 E-value=0.99 Score=32.76 Aligned_cols=63 Identities=21% Similarity=0.417 Sum_probs=45.1
Q ss_pred cchHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEec-c---ccCCCCHHHHHHHHHHHH
Q psy11601 14 QDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGT-A---VINCPDRIQAISTLKSSV 77 (82)
Q Consensus 14 ~~~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs-~---i~~~~d~~~~~~~l~~~~ 77 (82)
...+++|+++++.. ++||.+=|=++.+.+..+.++|++.|.++. . +=....+.+.+-++++.+
T Consensus 211 ~~~w~~i~~~~~~~-~~pvivKgv~~~~da~~~~~~G~~~i~vs~hGGr~~d~~~~~~~~L~~i~~~~ 277 (356)
T PF01070_consen 211 SLTWDDIEWIRKQW-KLPVIVKGVLSPEDAKRAVDAGVDGIDVSNHGGRQLDWGPPTIDALPEIRAAV 277 (356)
T ss_dssp T-SHHHHHHHHHHC-SSEEEEEEE-SHHHHHHHHHTT-SEEEEESGTGTSSTTS-BHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhccc-CCceEEEecccHHHHHHHHhcCCCEEEecCCCcccCccccccccccHHHHhhh
Confidence 35678899999886 689999999999999999999999988872 2 222345556666666544
No 325
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=88.11 E-value=1.7 Score=28.39 Aligned_cols=44 Identities=20% Similarity=0.307 Sum_probs=29.2
Q ss_pred cchHHHHHHHHHhCCCCcEEEEc---CCCcccHHHHHHcCCCEEEEe
Q psy11601 14 QDMMPKVKWLRENYPTLNIEVDG---GVGPNTIDECAKAGANWIVSG 57 (82)
Q Consensus 14 ~~~~~ki~~~~~~~~~~~i~~dG---GI~~~ni~~~~~~Gad~vv~g 57 (82)
+..++-|+++++.+++..+.+|= ++....++.+.++|||.+++-
T Consensus 37 ~~g~~~i~~l~~~~~~~~i~~d~k~~d~~~~~~~~~~~~Gad~i~vh 83 (206)
T TIGR03128 37 NEGIEAVKEMKEAFPDRKVLADLKTMDAGEYEAEQAFAAGADIVTVL 83 (206)
T ss_pred HhCHHHHHHHHHHCCCCEEEEEEeeccchHHHHHHHHHcCCCEEEEe
Confidence 44577788888876555555432 222336889999999988744
No 326
>PRK11475 DNA-binding transcriptional activator BglJ; Provisional
Probab=88.08 E-value=4.2 Score=27.13 Aligned_cols=59 Identities=8% Similarity=0.016 Sum_probs=38.7
Q ss_pred chHHHHHHHHHhCCCCcEEEEcCCC-cccH-HHHHHcCCCEEEEeccccCCCCHHHHHHHHHHHHH
Q psy11601 15 DMMPKVKWLRENYPTLNIEVDGGVG-PNTI-DECAKAGANWIVSGTAVINCPDRIQAISTLKSSVQ 78 (82)
Q Consensus 15 ~~~~ki~~~~~~~~~~~i~~dGGI~-~~ni-~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~~~ 78 (82)
+.++-++++++..|+++|.+--+-+ ...+ ..+.++||++| +.++.++.+-++.++..+.
T Consensus 54 ~Gl~~~~~l~~~~p~~~iIvlt~~~~~~~~~~~~~~~Ga~gy-----l~K~~~~~eL~~aI~~v~~ 114 (207)
T PRK11475 54 EGLSCLTELAIKFPRMRRLVIADDDIEARLIGSLSPSPLDGV-----LSKASTLEILQQELFLSLN 114 (207)
T ss_pred CHHHHHHHHHHHCCCCCEEEEeCCCCHHHHHHHHHHcCCeEE-----EecCCCHHHHHHHHHHHHC
Confidence 4678889998888888877765544 3323 33447999987 3455566666666665443
No 327
>cd01715 ETF_alpha The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin.
Probab=87.88 E-value=5.2 Score=25.50 Aligned_cols=71 Identities=11% Similarity=-0.005 Sum_probs=46.2
Q ss_pred CCCCCcchHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEecc-ccCCCCHHHHHHHHHHHHHH
Q psy11601 9 GQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTA-VINCPDRIQAISTLKSSVQK 79 (82)
Q Consensus 9 gq~~~~~~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~-i~~~~d~~~~~~~l~~~~~~ 79 (82)
+....+..++-+...+++...+...+.|.-..+...++...|+|-++.... -+...++....+.+.+.+++
T Consensus 10 ~g~l~~~s~el~~~A~~l~~~v~~v~~G~~~~~~~~~~~~~Gad~v~~~~~~~~~~~~~~~~a~al~~~i~~ 81 (168)
T cd01715 10 NGELRELTLEAVTAARKLGGEVTALVIGSGAEAVAAALKAYGADKVLVAEDPALAHYLAEPYAPALVALAKK 81 (168)
T ss_pred CCChHHHHHHHHHHHHHhCCCEEEEEECCChHHHHHHHHhcCCCEEEEecChhhcccChHHHHHHHHHHHHh
Confidence 344666777777777776445677777876555688889999999888642 33334555555555555443
No 328
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2. Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.
Probab=87.77 E-value=1.4 Score=31.60 Aligned_cols=42 Identities=17% Similarity=0.162 Sum_probs=33.6
Q ss_pred hHHHHHHHHHhCCCCcEEE---EcCCCcccHHHHHHcCCCEEEEec
Q psy11601 16 MMPKVKWLRENYPTLNIEV---DGGVGPNTIDECAKAGANWIVSGT 58 (82)
Q Consensus 16 ~~~ki~~~~~~~~~~~i~~---dGGI~~~ni~~~~~~Gad~vv~gs 58 (82)
.++.|+.+++.. ++||.+ -.|.+.+.+..+.++|+|.+++++
T Consensus 167 ~le~i~~i~~~~-~vPVivK~~g~g~~~~~a~~L~~aGvd~I~Vsg 211 (333)
T TIGR02151 167 WLEKIAEICSQL-SVPVIVKEVGFGISKEVAKLLADAGVSAIDVAG 211 (333)
T ss_pred HHHHHHHHHHhc-CCCEEEEecCCCCCHHHHHHHHHcCCCEEEECC
Confidence 457788888765 578776 345889999999999999999975
No 329
>PLN02535 glycolate oxidase
Probab=87.75 E-value=1.4 Score=32.23 Aligned_cols=43 Identities=19% Similarity=0.282 Sum_probs=37.8
Q ss_pred cchHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEe
Q psy11601 14 QDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSG 57 (82)
Q Consensus 14 ~~~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~g 57 (82)
+-.++.|+++++.. +.||.+=|=.+.+.+..+.++|+|.|++.
T Consensus 209 ~~tW~~i~~lr~~~-~~PvivKgV~~~~dA~~a~~~GvD~I~vs 251 (364)
T PLN02535 209 SLSWKDIEWLRSIT-NLPILIKGVLTREDAIKAVEVGVAGIIVS 251 (364)
T ss_pred CCCHHHHHHHHhcc-CCCEEEecCCCHHHHHHHHhcCCCEEEEe
Confidence 34678889998874 68999999999999999999999999886
No 330
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=87.72 E-value=1.8 Score=28.31 Aligned_cols=44 Identities=30% Similarity=0.462 Sum_probs=32.7
Q ss_pred cchHHHHHHHHHhCCCCcEEEEcCCC-cccHHHHHHcCCCEEEEec
Q psy11601 14 QDMMPKVKWLRENYPTLNIEVDGGVG-PNTIDECAKAGANWIVSGT 58 (82)
Q Consensus 14 ~~~~~ki~~~~~~~~~~~i~~dGGI~-~~ni~~~~~~Gad~vv~gs 58 (82)
+...+-++++++..+++ ....|.+. .++++.+.++|+|+++++.
T Consensus 40 ~~~~~~i~~l~~~~~~~-~iGag~v~~~~~~~~a~~~Ga~~i~~p~ 84 (190)
T cd00452 40 PGALEAIRALRKEFPEA-LIGAGTVLTPEQADAAIAAGAQFIVSPG 84 (190)
T ss_pred hhHHHHHHHHHHHCCCC-EEEEEeCCCHHHHHHHHHcCCCEEEcCC
Confidence 44667788888876543 34445555 9999999999999998763
No 331
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=86.79 E-value=1.4 Score=30.04 Aligned_cols=44 Identities=23% Similarity=0.388 Sum_probs=34.4
Q ss_pred CcchHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEE
Q psy11601 13 MQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVS 56 (82)
Q Consensus 13 ~~~~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~ 56 (82)
.|...+-|+++++.+|++.|=+=-=++++.+.++.++|++++|+
T Consensus 48 sp~a~e~I~~l~~~~p~~lIGAGTVL~~~q~~~a~~aGa~fiVs 91 (211)
T COG0800 48 TPAALEAIRALAKEFPEALIGAGTVLNPEQARQAIAAGAQFIVS 91 (211)
T ss_pred CCCHHHHHHHHHHhCcccEEccccccCHHHHHHHHHcCCCEEEC
Confidence 47788899999998875433333336899999999999998875
No 332
>PRK12484 nicotinate phosphoribosyltransferase; Provisional
Probab=86.69 E-value=2.3 Score=31.85 Aligned_cols=35 Identities=23% Similarity=0.241 Sum_probs=31.9
Q ss_pred CCCcEEEEcCCCcccHHHHHHcC--CCEEEEeccccC
Q psy11601 28 PTLNIEVDGGVGPNTIDECAKAG--ANWIVSGTAVIN 62 (82)
Q Consensus 28 ~~~~i~~dGGI~~~ni~~~~~~G--ad~vv~gs~i~~ 62 (82)
+++.|++.+|++.+.+.++.+.| +|.|-+|+.+..
T Consensus 278 ~~~kIi~S~gLde~~i~~l~~~g~~id~fGvGt~L~~ 314 (443)
T PRK12484 278 EQVKIVASGGLDEYRIAALLAAGAPIDGFGVGTRLGV 314 (443)
T ss_pred CCcEEEEeCCCCHHHHHHHHHCCCcCeEEeeCccccc
Confidence 57899999999999999999988 899999999865
No 333
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=86.18 E-value=2.1 Score=27.77 Aligned_cols=44 Identities=27% Similarity=0.280 Sum_probs=31.4
Q ss_pred cchHHHHHHHHHhCCCCcEEEEcCCCcc---cHHHHHHcCCCEEEEe
Q psy11601 14 QDMMPKVKWLRENYPTLNIEVDGGVGPN---TIDECAKAGANWIVSG 57 (82)
Q Consensus 14 ~~~~~ki~~~~~~~~~~~i~~dGGI~~~---ni~~~~~~Gad~vv~g 57 (82)
+..++-++++++..+++++.+++=+..- .++.+.++|+|++++-
T Consensus 38 ~~g~~~i~~i~~~~~~~~i~~~~~v~~~~~~~~~~~~~aGad~i~~h 84 (202)
T cd04726 38 SEGMEAVRALREAFPDKIIVADLKTADAGALEAEMAFKAGADIVTVL 84 (202)
T ss_pred HhCHHHHHHHHHHCCCCEEEEEEEeccccHHHHHHHHhcCCCEEEEE
Confidence 4456778888887667777766554433 3678899999998865
No 334
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=86.01 E-value=4.7 Score=28.01 Aligned_cols=58 Identities=21% Similarity=0.276 Sum_probs=39.9
Q ss_pred chHHHHHHHHHhCCCCcEEEEcCCCc-------ccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHHHH
Q psy11601 15 DMMPKVKWLRENYPTLNIEVDGGVGP-------NTIDECAKAGANWIVSGTAVINCPDRIQAISTLKSSVQ 78 (82)
Q Consensus 15 ~~~~ki~~~~~~~~~~~i~~dGGI~~-------~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~~~ 78 (82)
..++.++++|+..+++|+++-+=.|+ +.++.+.++|+|++++- |=|-+..+++.+..+
T Consensus 75 ~~~~~~~~~r~~~~~~p~vlm~Y~N~i~~~G~e~f~~~~~~aGvdGviip------DLp~ee~~~~~~~~~ 139 (258)
T PRK13111 75 DVFELVREIREKDPTIPIVLMTYYNPIFQYGVERFAADAAEAGVDGLIIP------DLPPEEAEELRAAAK 139 (258)
T ss_pred HHHHHHHHHHhcCCCCCEEEEecccHHhhcCHHHHHHHHHHcCCcEEEEC------CCCHHHHHHHHHHHH
Confidence 56777888885556788888884432 45889999999999984 333455555555444
No 335
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=85.95 E-value=6.8 Score=27.45 Aligned_cols=41 Identities=24% Similarity=0.400 Sum_probs=33.4
Q ss_pred hHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEe
Q psy11601 16 MMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSG 57 (82)
Q Consensus 16 ~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~g 57 (82)
..+.++++++.. +.|+.+=+=.+.+.+..+.++|+|.|++.
T Consensus 160 ~~~~i~~l~~~~-~~pvivK~v~s~~~a~~a~~~G~d~I~v~ 200 (299)
T cd02809 160 TWDDLAWLRSQW-KGPLILKGILTPEDALRAVDAGADGIVVS 200 (299)
T ss_pred CHHHHHHHHHhc-CCCEEEeecCCHHHHHHHHHCCCCEEEEc
Confidence 456778888765 37888777789999999999999999885
No 336
>COG1908 FrhD Coenzyme F420-reducing hydrogenase, delta subunit [Energy production and conversion]
Probab=85.94 E-value=2.8 Score=26.49 Aligned_cols=50 Identities=16% Similarity=0.275 Sum_probs=38.7
Q ss_pred CcEEEEcCCCcccHHHHHHcCCCEEEEecccc-------CCCCHHHHHHHHHHHHHH
Q psy11601 30 LNIEVDGGVGPNTIDECAKAGANWIVSGTAVI-------NCPDRIQAISTLKSSVQK 79 (82)
Q Consensus 30 ~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~-------~~~d~~~~~~~l~~~~~~ 79 (82)
+++.-.|-++++-+....+.|||+|.++..=. +.-..+..++-+++.+++
T Consensus 33 Irv~CsGrvn~~fvl~Al~~GaDGV~v~GC~~geCHy~~GN~ka~rR~~~lke~l~e 89 (132)
T COG1908 33 IRVMCSGRVNPEFVLKALRKGADGVLVAGCKIGECHYISGNYKAKRRMELLKELLKE 89 (132)
T ss_pred EEeeccCccCHHHHHHHHHcCCCeEEEecccccceeeeccchHHHHHHHHHHHHHHH
Confidence 56888999999999999999999998876533 233455677777777665
No 337
>TIGR01513 NAPRTase_put putative nicotinate phosphoribosyltransferase. Most members of this family are Gram-positive bacteria. An additional set of mutually closely related archaeal sequences score between the trusted and noise cutoffs.
Probab=85.90 E-value=1.9 Score=32.34 Aligned_cols=35 Identities=20% Similarity=0.319 Sum_probs=31.6
Q ss_pred CCCcEEEEcCCCcccHHHHHHcC--CCEEEEeccccC
Q psy11601 28 PTLNIEVDGGVGPNTIDECAKAG--ANWIVSGTAVIN 62 (82)
Q Consensus 28 ~~~~i~~dGGI~~~ni~~~~~~G--ad~vv~gs~i~~ 62 (82)
+++.|.+.||++.+.+.++.+.| +|.|-+|+.+..
T Consensus 276 ~~vkIi~S~gLde~~i~~l~~~g~~~d~fGvGt~L~t 312 (443)
T TIGR01513 276 TQVKIVVSNDLDENSIAALKAEGAPIDVYGVGTSLVT 312 (443)
T ss_pred CCcEEEEeCCCCHHHHHHHHHCCCceeEEecCcceee
Confidence 56889999999999999999988 899999998874
No 338
>cd08209 RLP_DK-MTP-1-P-enolase 2,3-diketo-5-methylthiopentyl-1-phosphate enolase. Ribulose bisphosphate carboxylase like proteins (RLPs) similar to B. subtilis YkrW protein, have been identified as 2,3-diketo-5-methylthiopentyl-1-phosphate enolases. They catalyze the tautomerization of 2,3-diketo-5-methylthiopentane 1-phosphate (DK-MTP 1-P). This is an important step in the methionine salvage pathway in which 5-methylthio-D-ribose (MTR) derived from 5'-methylthioadenosine is converted to methionine.
Probab=85.84 E-value=7.6 Score=28.78 Aligned_cols=52 Identities=8% Similarity=0.213 Sum_probs=41.5
Q ss_pred CCcEEEEcCCCcccHHHHHHc-CCCEEEEe-ccccC-CCCHHHHHHHHHHHHHHh
Q psy11601 29 TLNIEVDGGVGPNTIDECAKA-GANWIVSG-TAVIN-CPDRIQAISTLKSSVQKY 80 (82)
Q Consensus 29 ~~~i~~dGGI~~~ni~~~~~~-Gad~vv~g-s~i~~-~~d~~~~~~~l~~~~~~~ 80 (82)
.+-=+..||+++..++++.+. |.|.+... ..|++ ++.+++-++.+++.++..
T Consensus 313 ~~~Pv~sgG~~~g~vp~~~~~~G~Dvi~~~GGGi~gHp~G~~aGa~A~rqA~ea~ 367 (391)
T cd08209 313 GVFPVPSAGIHPGLVPQLLRDFGTDVILNAGGGIHGHPDGAAAGVRAFREAIDAV 367 (391)
T ss_pred CceEecCCCCChhHHHHHHHHhCCceEEecCcceecCCCCchhHHHHHHHHHHHH
Confidence 345678999999999977664 99977654 77998 567999999999887753
No 339
>PRK11197 lldD L-lactate dehydrogenase; Provisional
Probab=85.82 E-value=2.1 Score=31.50 Aligned_cols=41 Identities=20% Similarity=0.439 Sum_probs=35.6
Q ss_pred hHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEe
Q psy11601 16 MMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSG 57 (82)
Q Consensus 16 ~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~g 57 (82)
..+.|+++++.. +.|+.+=|=.+.+.+..+.++|+|.|+++
T Consensus 233 tW~di~~lr~~~-~~pvivKgV~s~~dA~~a~~~Gvd~I~Vs 273 (381)
T PRK11197 233 SWKDLEWIRDFW-DGPMVIKGILDPEDARDAVRFGADGIVVS 273 (381)
T ss_pred CHHHHHHHHHhC-CCCEEEEecCCHHHHHHHHhCCCCEEEEC
Confidence 456688888876 58999999999999999999999999765
No 340
>cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases. FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase.
Probab=85.80 E-value=4.1 Score=27.42 Aligned_cols=50 Identities=20% Similarity=0.146 Sum_probs=40.1
Q ss_pred CCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccC----CCCHHHHHHHHHHHH
Q psy11601 28 PTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVIN----CPDRIQAISTLKSSV 77 (82)
Q Consensus 28 ~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~----~~d~~~~~~~l~~~~ 77 (82)
.+..|.+.|=-+++++.+...+|+|.+-+.-.++. .+-..+.++.|.+.+
T Consensus 156 ~~tkil~As~r~~~ei~~a~~~Gad~vTv~~~vl~~l~~~~~t~~~v~~F~~d~ 209 (211)
T cd00956 156 FDTKILAASIRNPQHVIEAALAGADAITLPPDVLEQLLKHPLTDKGVEKFLEDW 209 (211)
T ss_pred CCceEEecccCCHHHHHHHHHcCCCEEEeCHHHHHHHhcCccHHHHHHHHHHHh
Confidence 35789999999999999999999999999977654 555667777776543
No 341
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=85.66 E-value=5.8 Score=30.53 Aligned_cols=50 Identities=12% Similarity=0.139 Sum_probs=34.3
Q ss_pred HHHHHHHHHhCCCCcEEEEcCC-CcccHHHHHH-cCCCEEEEeccc-cCCCCHH
Q psy11601 17 MPKVKWLRENYPTLNIEVDGGV-GPNTIDECAK-AGANWIVSGTAV-INCPDRI 67 (82)
Q Consensus 17 ~~ki~~~~~~~~~~~i~~dGGI-~~~ni~~~~~-~Gad~vv~gs~i-~~~~d~~ 67 (82)
++-++++++.. ++|+.+.||+ +++.+.++.. .||+...++|.+ |..-++.
T Consensus 471 ~~l~~~v~~~~-~ipviasGG~g~~~d~~~~~~~~~~~a~~aa~~fh~~~~~~~ 523 (538)
T PLN02617 471 IELVKLVSDAV-TIPVIASSGAGTPEHFSDVFSKTNASAALAAGIFHRKEVPIS 523 (538)
T ss_pred HHHHHHHHhhC-CCCEEEECCCCCHHHHHHHHhcCCccEEEEEeeeccCCCCHH
Confidence 44455555554 6899999987 5788888886 678987777665 3333443
No 342
>PRK09243 nicotinate phosphoribosyltransferase; Validated
Probab=85.54 E-value=2.4 Score=31.93 Aligned_cols=36 Identities=17% Similarity=0.167 Sum_probs=31.8
Q ss_pred CCCcEEEEcCCCcccHHHHHHcC--CCEEEEeccccCC
Q psy11601 28 PTLNIEVDGGVGPNTIDECAKAG--ANWIVSGTAVINC 63 (82)
Q Consensus 28 ~~~~i~~dGGI~~~ni~~~~~~G--ad~vv~gs~i~~~ 63 (82)
+++.|++.||++.+.+.++...| +|.|-+|+.+..+
T Consensus 285 ~~~kIi~S~gLde~~i~~l~~~g~~id~fGvGt~L~~~ 322 (464)
T PRK09243 285 TDTKIVASNDLDEYTIASLKLQGAPIDGFGVGTKLVTG 322 (464)
T ss_pred CCcEEEEeCCCCHHHHHHHHhCCCCceEEEcCccccCC
Confidence 57889999999999999999777 5999999998764
No 343
>PF02579 Nitro_FeMo-Co: Dinitrogenase iron-molybdenum cofactor; InterPro: IPR003731 This entry represents several Nif (B, X and Y) proteins, which are involved in the biosynthesis of the iron-molybdenum cofactor (FeMo-co) found in the dinitrogenase enzyme of the nitrogenase complex in nitrogen-fixing bacteria. The nitrogenase complex catalyses the reduction of atmospheric dinitrogen to ammonia, and is composed of an iron metalloprotein (dinitrogenase reductase; homodimer of NifH; IPR000392 from INTERPRO) and a Fe-Mo metalloprotein (dinitrogenase; heterotetramer of NifD and NifK; IPR000318 from INTERPRO). The pathway for the synthesis of the Fe-Mo cofactor involves several proteins, including NifB, NifE, NifH, NifN, NifQ, NifV and NifX. NifB appears to be an iron-sulphur source for FeMo-co biosynthesis, while NifX may be associated with the mature FeMo-co, in particular with the addition of homocitrate during the last step of biosynthesis []. The NifX protein shows sequence similarity with the C terminus of NifB [], as well as to the conserved protein MTH1175 from the archaeon Methanobacterium thermoautotrophicum, which displays a ribonuclease H-like motif of three layers, alpha/beta/alpha, with a single mixed beta-sheet [].; PDB: 2QTD_A 2KLA_A 1EO1_A 1P90_A 1RDU_A 2YX6_D 1O13_A 1T3V_A 2RE2_B 2WFB_A.
Probab=85.47 E-value=4.8 Score=22.73 Aligned_cols=50 Identities=16% Similarity=0.235 Sum_probs=36.9
Q ss_pred HHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHH
Q psy11601 19 KVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINCPDRIQAISTLK 74 (82)
Q Consensus 19 ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~ 74 (82)
++.++... .++.+++.|+|...-...+.+.|+..+.. ...++.+.++++.
T Consensus 44 ~~~~~l~~-~~v~~li~~~iG~~~~~~L~~~gI~v~~~-----~~~~i~~~l~~~~ 93 (94)
T PF02579_consen 44 KIAKFLAE-EGVDVLICGGIGEGAFRALKEAGIKVYQG-----AGGDIEEALEAYL 93 (94)
T ss_dssp HHHHHHHH-TTESEEEESCSCHHHHHHHHHTTSEEEES-----TSSBHHHHHHHHH
T ss_pred hHHHHHHH-cCCCEEEEeCCCHHHHHHHHHCCCEEEEc-----CCCCHHHHHHHHh
Confidence 34443333 36899999999999999999999998764 3456666666654
No 344
>KOG4201|consensus
Probab=85.34 E-value=1.6 Score=30.46 Aligned_cols=45 Identities=22% Similarity=0.338 Sum_probs=37.8
Q ss_pred CcEEEEcC-CCcccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHH
Q psy11601 30 LNIEVDGG-VGPNTIDECAKAGANWIVSGTAVINCPDRIQAISTLK 74 (82)
Q Consensus 30 ~~i~~dGG-I~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~ 74 (82)
+.+++--| -+++.+..+.++|+..|.+|-++.++.||+..+.+|.
T Consensus 238 vilva~SGi~tpdDia~~q~~GV~avLVGEslmk~sDp~k~i~eL~ 283 (289)
T KOG4201|consen 238 VILVALSGIFTPDDIAKYQKAGVKAVLVGESLMKQSDPKKFIHELF 283 (289)
T ss_pred eEEEeccCCCCHHHHHHHHHcCceEEEecHHHHhccCHHHHHHHHh
Confidence 44444444 5799999999999999999999999999998888775
No 345
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=85.34 E-value=6.2 Score=26.21 Aligned_cols=57 Identities=18% Similarity=0.151 Sum_probs=33.9
Q ss_pred HHHHHHHHHhCCCCcEE------------EEcCCCcccHHHHHHcCCCEEEEeccccC-C--CCHHHHHHHHHH
Q psy11601 17 MPKVKWLRENYPTLNIE------------VDGGVGPNTIDECAKAGANWIVSGTAVIN-C--PDRIQAISTLKS 75 (82)
Q Consensus 17 ~~ki~~~~~~~~~~~i~------------~dGGI~~~ni~~~~~~Gad~vv~gs~i~~-~--~d~~~~~~~l~~ 75 (82)
.+.++++++.. ++|+. ..++ +.+.+.++.++|||.++....... + ....+.++.+++
T Consensus 45 ~~~i~~i~~~~-~~Pil~~~~~d~~~~~~~~~~-~~~~v~~a~~aGad~I~~d~~~~~~p~~~~~~~~i~~~~~ 116 (221)
T PRK01130 45 VEDIKAIRAVV-DVPIIGIIKRDYPDSEVYITP-TLKEVDALAAAGADIIALDATLRPRPDGETLAELVKRIKE 116 (221)
T ss_pred HHHHHHHHHhC-CCCEEEEEecCCCCCCceECC-CHHHHHHHHHcCCCEEEEeCCCCCCCCCCCHHHHHHHHHh
Confidence 55666666542 34442 3333 556799999999998887765432 2 344444444443
No 346
>TIGR00875 fsa_talC_mipB fructose-6-phosphate aldolase, TalC/MipB family. This model represents a family that includes the E. coli transaldolase homologs TalC and MipB, both shown to be fructose-6-phosphate aldolases rather than transaldolases as previously thought. It is related to but distinct from the transaldolase family of E. coli TalA and TalB. The member from Bacillus subtilis becomes phosphorylated during early stationary phase but not during exponential growth.
Probab=85.33 E-value=5.2 Score=27.12 Aligned_cols=64 Identities=14% Similarity=0.093 Sum_probs=46.4
Q ss_pred hHHHHHHHHHh----CCCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccC----CCCHHHHHHHHHHHHHH
Q psy11601 16 MMPKVKWLREN----YPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVIN----CPDRIQAISTLKSSVQK 79 (82)
Q Consensus 16 ~~~ki~~~~~~----~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~----~~d~~~~~~~l~~~~~~ 79 (82)
.++-++++++. .++.+|.+..=-+.+++.++..+|+|.+-+.-.++. .+-....++.|.+-+++
T Consensus 140 g~~~v~~~~~~~~~~~~~tkIlaAS~r~~~~v~~~~~~G~d~vTip~~vl~~l~~~p~t~~~~~~F~~d~~~ 211 (213)
T TIGR00875 140 GMKLIEEVKTIFENHAPDTEVIAASVRHPRHVLEAALIGADIATMPLDVMQQLFNHPLTDIGLERFLKDWNA 211 (213)
T ss_pred HHHHHHHHHHHHHHcCCCCEEEEeccCCHHHHHHHHHcCCCEEEcCHHHHHHHHcCCchHHHHHHHHHHHHh
Confidence 45555554443 357888888888888888888999999998877654 55567788888776553
No 347
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=85.12 E-value=2.4 Score=30.97 Aligned_cols=40 Identities=20% Similarity=0.153 Sum_probs=29.0
Q ss_pred HHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEe
Q psy11601 17 MPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSG 57 (82)
Q Consensus 17 ~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~g 57 (82)
...+.++.+.. ++||.+=+-.+.+.+..+.++|||.|.+|
T Consensus 176 ~~~i~~~ik~~-~ipVIaG~V~t~e~A~~l~~aGAD~V~VG 215 (368)
T PRK08649 176 PLNLKEFIYEL-DVPVIVGGCVTYTTALHLMRTGAAGVLVG 215 (368)
T ss_pred HHHHHHHHHHC-CCCEEEeCCCCHHHHHHHHHcCCCEEEEC
Confidence 45556655544 68887733456677888999999999888
No 348
>TIGR00282 metallophosphoesterase, MG_246/BB_0505 family. A member of this family from Mycoplasma Pneumoniae has been crystallized and described as a novel phosphatase.
Probab=85.01 E-value=2.3 Score=29.80 Aligned_cols=48 Identities=17% Similarity=0.279 Sum_probs=34.6
Q ss_pred HHHHHHHHHhCCCCcEEE-------Ec-CCCcccHHHHHHcCCCEEEEeccccCCCC
Q psy11601 17 MPKVKWLRENYPTLNIEV-------DG-GVGPNTIDECAKAGANWIVSGTAVINCPD 65 (82)
Q Consensus 17 ~~ki~~~~~~~~~~~i~~-------dG-GI~~~ni~~~~~~Gad~vv~gs~i~~~~d 65 (82)
-+.|.++++.++ ..+++ .| |++.+.+.++.++|+|.+.+|-=.|...+
T Consensus 19 ~~~L~~lk~~~~-~D~vIaNgEn~~gG~Gi~~~~~~~L~~~GvDviT~GNH~~Dkge 74 (266)
T TIGR00282 19 KNNLPQLKSKYQ-ADLVIANGENTTHGKGLTLKIYEFLKQSGVNYITMGNHTWFQKL 74 (266)
T ss_pred HHHHHHHHHhCC-CCEEEEcCcccCCCCCCCHHHHHHHHhcCCCEEEccchhccCcH
Confidence 344666666542 23333 34 69999999999999999999977886554
No 349
>PF02662 FlpD: Methyl-viologen-reducing hydrogenase, delta subunit; InterPro: IPR003813 Methyl-viologen-reducing hydrogenase (MVH) is one of the enzymes involved in methanogenesis and coded in the mth-flp-mvh-mrt cluster of methane genes in Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) []. No specific functions have been assigned to the delta subunit.; GO: 0015948 methanogenesis, 0055114 oxidation-reduction process
Probab=84.98 E-value=1.9 Score=26.77 Aligned_cols=50 Identities=16% Similarity=0.223 Sum_probs=37.2
Q ss_pred CcEEEEcCCCcccHHHHHHcCCCEEEEeccccC-------CCCHHHHHHHHHHHHHH
Q psy11601 30 LNIEVDGGVGPNTIDECAKAGANWIVSGTAVIN-------CPDRIQAISTLKSSVQK 79 (82)
Q Consensus 30 ~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~-------~~d~~~~~~~l~~~~~~ 79 (82)
+++--.|-|++..+......|||+|.+...=.+ ....++.++.+++.+++
T Consensus 32 IrvpC~Grv~~~~il~Af~~GADGV~V~gC~~g~Ch~~~Gn~~a~~Rv~~~k~~L~~ 88 (124)
T PF02662_consen 32 IRVPCSGRVDPEFILRAFEKGADGVLVAGCHPGDCHYREGNYRAEKRVERLKKLLEE 88 (124)
T ss_pred EEccCCCccCHHHHHHHHHcCCCEEEEeCCCCCCCCcchhhHHHHHHHHHHHHHHHH
Confidence 557789999999999999999999999554432 22345666777766654
No 350
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=84.93 E-value=9.3 Score=26.26 Aligned_cols=72 Identities=21% Similarity=0.200 Sum_probs=41.7
Q ss_pred cCCCCCCCCCCc----chHHHHHHHHHhCCCCcEEEEcCCC---cccHHH-HHHcCCCEEEEeccccC-CCCHH-HHHHH
Q psy11601 3 VEPGFGGQKFMQ----DMMPKVKWLRENYPTLNIEVDGGVG---PNTIDE-CAKAGANWIVSGTAVIN-CPDRI-QAIST 72 (82)
Q Consensus 3 v~pG~~gq~~~~----~~~~ki~~~~~~~~~~~i~~dGGI~---~~ni~~-~~~~Gad~vv~gs~i~~-~~d~~-~~~~~ 72 (82)
..||..=+.+.+ +.++.+..++...|+..|-+.|+=. .+.... .+.+|||.+++|.++.. ...+. +.++-
T Consensus 211 p~~gT~l~~~~~~s~~~~~~~ia~~r~~lp~~~i~~~~~~~~~~~~~~~~~~l~~G~n~i~~g~~~~~~g~~~~~~~~~~ 290 (296)
T TIGR00433 211 KIKGTPLADNKELSADDALKTIALARIIMPKAEIRLAGGREVNMRELQQAMCFMAGANSIFVGDYLTTTGNPEEDKDKKL 290 (296)
T ss_pred EcCCCccCCCCCCCHHHHHHHHHHHHHHCCcceEEEeCCcchhhhhhHHHHHHHhcCceEEEcCcccCCCCCCcHHHHHH
Confidence 345654333443 3334455556666766677777743 122233 58999999999999875 33444 44444
Q ss_pred HH
Q psy11601 73 LK 74 (82)
Q Consensus 73 l~ 74 (82)
++
T Consensus 291 ~~ 292 (296)
T TIGR00433 291 LA 292 (296)
T ss_pred HH
Confidence 43
No 351
>COG0325 Predicted enzyme with a TIM-barrel fold [General function prediction only]
Probab=84.82 E-value=0.97 Score=31.19 Aligned_cols=63 Identities=24% Similarity=0.369 Sum_probs=38.4
Q ss_pred CccCCCCCCCCCCcchHHHHHHHHHh----CCCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCCCC
Q psy11601 1 MTVEPGFGGQKFMQDMMPKVKWLREN----YPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINCPD 65 (82)
Q Consensus 1 m~v~pG~~gq~~~~~~~~ki~~~~~~----~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~~d 65 (82)
||+-|=.....-....+.+++++++. ++++ -...=|.+- ..+..+++|+..|=+||+||++.+
T Consensus 161 M~ipp~~~d~~~~~~~F~~l~~l~~~l~~~~~~~-~~LSMGMS~-D~e~AI~~GaT~VRIGtaiFg~r~ 227 (228)
T COG0325 161 MTIPPLTDDPEEIFAVFRKLRKLFDELKAKYPPI-DELSMGMSN-DYEIAIAEGATMVRIGTAIFGARD 227 (228)
T ss_pred EeeCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCC-CeecCcCcc-cHHHHHHcCCCEEEEcHHhhCCCC
Confidence 55555433333334556666665432 2211 234445443 477888999999999999998754
No 352
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=84.82 E-value=5.5 Score=27.56 Aligned_cols=44 Identities=14% Similarity=0.245 Sum_probs=33.2
Q ss_pred cchHHHHHHHHHhCCCCcEEEEcCCCc-------ccHHHHHHcCCCEEEEe
Q psy11601 14 QDMMPKVKWLRENYPTLNIEVDGGVGP-------NTIDECAKAGANWIVSG 57 (82)
Q Consensus 14 ~~~~~ki~~~~~~~~~~~i~~dGGI~~-------~ni~~~~~~Gad~vv~g 57 (82)
...++-++++++...++|+..-+=-|+ +-+..+.++|+|++++-
T Consensus 72 ~~~~~~v~~ir~~~~~~plv~m~Y~Npi~~~G~e~f~~~~~~aGvdgviip 122 (256)
T TIGR00262 72 EKCFELLKKVRQKHPNIPIGLLTYYNLIFRKGVEEFYAKCKEVGVDGVLVA 122 (256)
T ss_pred HHHHHHHHHHHhcCCCCCEEEEEeccHHhhhhHHHHHHHHHHcCCCEEEEC
Confidence 356777888887544678777777776 44889999999998775
No 353
>PRK01362 putative translaldolase; Provisional
Probab=84.50 E-value=6.2 Score=26.77 Aligned_cols=64 Identities=22% Similarity=0.114 Sum_probs=45.9
Q ss_pred hHHHHHHHHHh----CCCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccC----CCCHHHHHHHHHHHHHH
Q psy11601 16 MMPKVKWLREN----YPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVIN----CPDRIQAISTLKSSVQK 79 (82)
Q Consensus 16 ~~~ki~~~~~~----~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~----~~d~~~~~~~l~~~~~~ 79 (82)
.++-++++++. .++..|.+..=-+.+++.++..+|+|.+-+.-.++. .+-..+.++.|.+.+++
T Consensus 140 g~~~i~~~~~~~~~~~~~tkilaAS~r~~~~v~~~~~~G~d~iTi~~~vl~~l~~~p~t~~~~~~F~~dw~~ 211 (214)
T PRK01362 140 GMELIEDIREIYDNYGFDTEIIAASVRHPMHVLEAALAGADIATIPYKVIKQLFKHPLTDKGLEKFLADWEK 211 (214)
T ss_pred HHHHHHHHHHHHHHcCCCcEEEEeecCCHHHHHHHHHcCCCEEecCHHHHHHHHcCCchHHHHHHHHHHHHH
Confidence 44444444432 346788888888888888888999999888866654 55667888888776654
No 354
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=84.46 E-value=3.4 Score=25.11 Aligned_cols=38 Identities=18% Similarity=0.194 Sum_probs=26.0
Q ss_pred HHHHHHhCC-CCcEEEEcCCCcccHHHHHHcCCCEEEEe
Q psy11601 20 VKWLRENYP-TLNIEVDGGVGPNTIDECAKAGANWIVSG 57 (82)
Q Consensus 20 i~~~~~~~~-~~~i~~dGGI~~~ni~~~~~~Gad~vv~g 57 (82)
++++++..+ ++++.+-|....+...++.++|+|.+.-.
T Consensus 71 ~~~L~~~~~~~i~i~~GG~~~~~~~~~~~~~G~d~~~~~ 109 (122)
T cd02071 71 IELLRELGAGDILVVGGGIIPPEDYELLKEMGVAEIFGP 109 (122)
T ss_pred HHHHHhcCCCCCEEEEECCCCHHHHHHHHHCCCCEEECC
Confidence 334555533 56666666677778899999999877533
No 355
>TIGR02663 nifX nitrogen fixation protein NifX. Members of this family are NifX proteins encoded within operons for nitrogen fixation in a number of bacteria. NifX, NafY, and the C-terminal region of NifB all belong to the Pfam family pfam02579 and are involved in MoFe cofactor biosynthesis. NifX is a nitrogenase accessory protein with a role in expression of the MoFe cofactor.
Probab=84.28 E-value=6.1 Score=23.99 Aligned_cols=47 Identities=11% Similarity=0.003 Sum_probs=38.1
Q ss_pred CCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHHHH
Q psy11601 28 PTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINCPDRIQAISTLKSSVQ 78 (82)
Q Consensus 28 ~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~~~ 78 (82)
.++.+++.|||...-...+.+.|+..+..+. ...+.+.+++|.+.+.
T Consensus 62 ~~c~vvi~~~IG~~a~~~L~~~gI~~~~~~~----~~~v~eal~~l~~~~~ 108 (119)
T TIGR02663 62 KDCAILYCLAIGGPAAAKVVAAKIHPIKVNE----PESISELLERLQKMLK 108 (119)
T ss_pred CCCcEEEEhhcCccHHHHHHHcCCeeEecCC----CccHHHHHHHHHHHHc
Confidence 3799999999999999999999999875532 2457788888887764
No 356
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=84.22 E-value=7.5 Score=26.62 Aligned_cols=63 Identities=17% Similarity=0.192 Sum_probs=40.7
Q ss_pred cchHHHHHHHHHhCCCCcEEEEcCC---C----cccHHHHHHcCCCEEEEeccccCC----------CCHHHHHHHHHHH
Q psy11601 14 QDMMPKVKWLRENYPTLNIEVDGGV---G----PNTIDECAKAGANWIVSGTAVINC----------PDRIQAISTLKSS 76 (82)
Q Consensus 14 ~~~~~ki~~~~~~~~~~~i~~dGGI---~----~~ni~~~~~~Gad~vv~gs~i~~~----------~d~~~~~~~l~~~ 76 (82)
.+.+..++.+.+.. ++|+.+|+-. + .+|++.+.++|++++.+--..+.. -++.+.+++++..
T Consensus 55 ~e~~~~~~~I~~~~-~~Pv~~D~~~G~g~~~~~~~~v~~~~~~G~~gv~iED~~~~k~~g~~~~~~~~~~ee~~~ki~aa 133 (243)
T cd00377 55 DEVLAAVRRIARAV-DLPVIADADTGYGNALNVARTVRELEEAGAAGIHIEDQVGPKKCGHHGGKVLVPIEEFVAKIKAA 133 (243)
T ss_pred HHHHHHHHHHHhhc-cCCEEEEcCCCCCCHHHHHHHHHHHHHcCCEEEEEecCCCCccccCCCCCeecCHHHHHHHHHHH
Confidence 45666666666654 6899999877 3 345678889999999994333321 1455555555544
Q ss_pred H
Q psy11601 77 V 77 (82)
Q Consensus 77 ~ 77 (82)
.
T Consensus 134 ~ 134 (243)
T cd00377 134 R 134 (243)
T ss_pred H
Confidence 3
No 357
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=84.18 E-value=1.3 Score=31.84 Aligned_cols=34 Identities=18% Similarity=0.279 Sum_probs=27.9
Q ss_pred CCcEEEEcCC-CcccHHHHHHcCC--------CEEEEeccccC
Q psy11601 29 TLNIEVDGGV-GPNTIDECAKAGA--------NWIVSGTAVIN 62 (82)
Q Consensus 29 ~~~i~~dGGI-~~~ni~~~~~~Ga--------d~vv~gs~i~~ 62 (82)
++|+.+.||| +...+......|| +++.+|+.+..
T Consensus 165 ~iPViAAGGI~dgr~~aaalaLGA~~~~~Ga~~GV~mGTrFl~ 207 (320)
T cd04743 165 KIHLLFAGGIHDERSAAMVSALAAPLAERGAKVGVLMGTAYLF 207 (320)
T ss_pred CccEEEEcCCCCHHHHHHHHHcCCcccccccccEEEEccHHhc
Confidence 6999999999 5555677888888 79999988654
No 358
>PF07071 DUF1341: Protein of unknown function (DUF1341); InterPro: IPR010763 Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.; PDB: 3NZR_D 3LM7_A 3M0Z_B 3M6Y_A 3N73_A 3MUX_A.
Probab=84.13 E-value=2.1 Score=29.28 Aligned_cols=27 Identities=22% Similarity=0.507 Sum_probs=17.1
Q ss_pred CCcEEEEcCCCcccHHHH----HHcCCCEEE
Q psy11601 29 TLNIEVDGGVGPNTIDEC----AKAGANWIV 55 (82)
Q Consensus 29 ~~~i~~dGGI~~~ni~~~----~~~Gad~vv 55 (82)
.++++-.|||+.+|++++ +++|+..++
T Consensus 177 g~~lEPTGGIdl~N~~~I~~i~l~aGv~~vi 207 (218)
T PF07071_consen 177 GFTLEPTGGIDLDNFEEIVKICLDAGVEKVI 207 (218)
T ss_dssp T-EEEEBSS--TTTHHHHHHHHHHTT-S-B-
T ss_pred CceeCCcCCcCHHHHHHHHHHHHHcCCCeec
Confidence 689999999999999865 456766553
No 359
>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B ....
Probab=84.11 E-value=6.4 Score=27.05 Aligned_cols=60 Identities=13% Similarity=0.294 Sum_probs=40.5
Q ss_pred chHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHHHHHh
Q psy11601 15 DMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINCPDRIQAISTLKSSVQKY 80 (82)
Q Consensus 15 ~~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~~~~~ 80 (82)
...+.++++.+.. +.|+.+.-+=..-++++|.+.|++.++.+..++. ..+..+++.++++
T Consensus 178 ~~~~~i~~~~~~~-~~Pl~v~~~~~~~~~~eL~~lGv~~v~~~~~~~~-----aa~~a~~~~~~~i 237 (238)
T PF13714_consen 178 QSEEEIERIVKAV-DGPLNVNPGPGTLSAEELAELGVKRVSYGNSLLR-----AAMKAMRDAAEAI 237 (238)
T ss_dssp SSHHHHHHHHHHH-SSEEEEETTSSSS-HHHHHHTTESEEEETSHHHH-----HHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhc-CCCEEEEcCCCCCCHHHHHHCCCcEEEEcHHHHH-----HHHHHHHHHHHhc
Confidence 3445577766655 4777776653348899999999999999987774 3555555555544
No 360
>PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=84.08 E-value=6.4 Score=28.75 Aligned_cols=47 Identities=17% Similarity=0.230 Sum_probs=39.9
Q ss_pred chHHHHHHHHHhCCCCcEEEEcCC-----------------------CcccHHHHHHcCCCEEEEecccc
Q psy11601 15 DMMPKVKWLRENYPTLNIEVDGGV-----------------------GPNTIDECAKAGANWIVSGTAVI 61 (82)
Q Consensus 15 ~~~~ki~~~~~~~~~~~i~~dGGI-----------------------~~~ni~~~~~~Gad~vv~gs~i~ 61 (82)
-.++++++|++..+++|++.=||- ..+++++..+.|+.-|=+++.+.
T Consensus 212 LdfdrL~eI~~~v~~vPLVLHGgSG~~~~~~~~~~~~g~~~~~~~G~~~e~i~~ai~~GI~KINi~Tdl~ 281 (347)
T PRK09196 212 LAIDRIKEIHARLPNTHLVMHGSSSVPQELLDIINEYGGDMPETYGVPVEEIQEGIKHGVRKVNIDTDLR 281 (347)
T ss_pred ccHHHHHHHHhcCCCCCEEEeCCCCCCHHHHHHHHHhcCCccccCCCCHHHHHHHHHCCCceEEeChHHH
Confidence 367788888887657999999988 44999999999999999988875
No 361
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=83.80 E-value=4.7 Score=29.26 Aligned_cols=44 Identities=23% Similarity=0.329 Sum_probs=31.4
Q ss_pred HHHHHHHHhCCCCcEEE-EcCCCcc----cHHHHHHcCC--CEEEEeccccC
Q psy11601 18 PKVKWLRENYPTLNIEV-DGGVGPN----TIDECAKAGA--NWIVSGTAVIN 62 (82)
Q Consensus 18 ~ki~~~~~~~~~~~i~~-dGGI~~~----ni~~~~~~Ga--d~vv~gs~i~~ 62 (82)
+.++++.+.. +.|+++ .||.+.+ .+...+++|+ ++|.+|+.+|+
T Consensus 231 ~~f~~~~~a~-~~P~vvlsgG~~~~~f~~~l~~A~~aGa~f~Gvl~GRniwq 281 (340)
T PRK12858 231 KLFREQSDAT-DLPFIFLSAGVSPELFRRTLEFACEAGADFSGVLCGRATWQ 281 (340)
T ss_pred HHHHHHHhhC-CCCEEEECCCCCHHHHHHHHHHHHHcCCCccchhhhHHHHh
Confidence 4455555544 456555 8888665 4556778999 99999999997
No 362
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=83.53 E-value=4.3 Score=24.20 Aligned_cols=40 Identities=13% Similarity=0.121 Sum_probs=25.1
Q ss_pred HHHHHHHHHhCC-CCcEEEEcCCCcccHHHHHHcCCCEEEE
Q psy11601 17 MPKVKWLRENYP-TLNIEVDGGVGPNTIDECAKAGANWIVS 56 (82)
Q Consensus 17 ~~ki~~~~~~~~-~~~i~~dGGI~~~ni~~~~~~Gad~vv~ 56 (82)
.+-++++++..+ +++|.+-|..-...-..+.+.|+|.++-
T Consensus 68 ~~~i~~l~~~~~~~~~i~vGG~~~~~~~~~~~~~G~D~~~~ 108 (119)
T cd02067 68 KEVIEELKEAGLDDIPVLVGGAIVTRDFKFLKEIGVDAYFG 108 (119)
T ss_pred HHHHHHHHHcCCCCCeEEEECCCCChhHHHHHHcCCeEEEC
Confidence 333455666655 5666666665555456788889887754
No 363
>TIGR03326 rubisco_III ribulose bisphosphate carboxylase, type III. Members of this protein family are the archaeal, single chain, type III form of ribulose bisphosphate carboxylase, or RuBisCO. Members act is a three-step pathway for conversion of the sugar moiety of AMP to two molecules of 3-phosphoglycerate. Many of these species use ADP-dependent sugar kinases, which form AMP, for glycolysis.
Probab=83.25 E-value=11 Score=28.07 Aligned_cols=76 Identities=11% Similarity=0.140 Sum_probs=51.7
Q ss_pred CCCCCCCC--CcchHHHHHHHHHh----CCCCcEEEEcCCCcccHHHHH-HcCCCEEEEe-ccccC-CCCHHHHHHHHHH
Q psy11601 5 PGFGGQKF--MQDMMPKVKWLREN----YPTLNIEVDGGVGPNTIDECA-KAGANWIVSG-TAVIN-CPDRIQAISTLKS 75 (82)
Q Consensus 5 pG~~gq~~--~~~~~~ki~~~~~~----~~~~~i~~dGGI~~~ni~~~~-~~Gad~vv~g-s~i~~-~~d~~~~~~~l~~ 75 (82)
|+.++-+| .++....+.+.... ...+-=+..||+++..++++. ..|-|.+... ..|++ ++.+++-++.+++
T Consensus 305 ~t~~~Gk~~~~~~~~~~~~~~~~~~~~~~k~~~Pv~sGG~~~~~vp~~~~~~G~Dvil~~GGGi~gHp~G~~aGa~A~rq 384 (412)
T TIGR03326 305 GTAGVGKLEGGKEDTKQINDFLRQKWHHIKPVFPVSSGGLHPGLVPPLIDALGKDLVIQAGGGVHGHPDGPRAGAKALRA 384 (412)
T ss_pred CCCccCCCCCCHHHHHHHHHHHhCcccCCCCceEecCCCCChhHHHHHHHhcCCceEEecCCccccCCCChhhHHHHHHH
Confidence 44423344 35555556654432 123446789999999999765 5788876654 77998 5789999999998
Q ss_pred HHHHh
Q psy11601 76 SVQKY 80 (82)
Q Consensus 76 ~~~~~ 80 (82)
.++..
T Consensus 385 A~ea~ 389 (412)
T TIGR03326 385 AIDAI 389 (412)
T ss_pred HHHHH
Confidence 87653
No 364
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=83.19 E-value=3.3 Score=27.97 Aligned_cols=43 Identities=26% Similarity=0.124 Sum_probs=32.3
Q ss_pred CcchHHHHHHHHHhCCCC--cEEEEcC-CCcccHHHHHHcCCCEEE
Q psy11601 13 MQDMMPKVKWLRENYPTL--NIEVDGG-VGPNTIDECAKAGANWIV 55 (82)
Q Consensus 13 ~~~~~~ki~~~~~~~~~~--~i~~dGG-I~~~ni~~~~~~Gad~vv 55 (82)
.|..++-|+++++.+++- -+.-.|. .+.+.++...++||+++|
T Consensus 48 ~~~a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~a~~aGA~Fiv 93 (213)
T PRK06552 48 NPFASEVIKELVELYKDDPEVLIGAGTVLDAVTARLAILAGAQFIV 93 (213)
T ss_pred CccHHHHHHHHHHHcCCCCCeEEeeeeCCCHHHHHHHHHcCCCEEE
Confidence 477888899998876321 2455555 478899999999999998
No 365
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=83.14 E-value=9.9 Score=27.93 Aligned_cols=62 Identities=19% Similarity=0.192 Sum_probs=42.7
Q ss_pred chHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEe----ccccCCCCHHHHHHHHHHHH
Q psy11601 15 DMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSG----TAVINCPDRIQAISTLKSSV 77 (82)
Q Consensus 15 ~~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~g----s~i~~~~d~~~~~~~l~~~~ 77 (82)
-..+.|+++++.. ++||.+=|=-+.+.+..+.++|+|.|+++ +-++..+..-+.+.++++.+
T Consensus 215 ~~w~~i~~l~~~~-~~PvivKGv~~~eda~~a~~~Gvd~I~VS~HGGrq~~~~~a~~~~L~ei~~av 280 (367)
T TIGR02708 215 LSPRDIEEIAGYS-GLPVYVKGPQCPEDADRALKAGASGIWVTNHGGRQLDGGPAAFDSLQEVAEAV 280 (367)
T ss_pred CCHHHHHHHHHhc-CCCEEEeCCCCHHHHHHHHHcCcCEEEECCcCccCCCCCCcHHHHHHHHHHHh
Confidence 3457888888875 58999887667899999999999987665 22443333334555555443
No 366
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=82.92 E-value=9.3 Score=27.06 Aligned_cols=47 Identities=15% Similarity=0.220 Sum_probs=33.8
Q ss_pred chHHHHHHHHHhCCCCcE---EEEcCCCc-ccHHHHHHcCCCEEEEeccccC
Q psy11601 15 DMMPKVKWLRENYPTLNI---EVDGGVGP-NTIDECAKAGANWIVSGTAVIN 62 (82)
Q Consensus 15 ~~~~ki~~~~~~~~~~~i---~~dGGI~~-~ni~~~~~~Gad~vv~gs~i~~ 62 (82)
...+.++++.+..+ .|+ ...||-++ -++++|.+.|++.++.+..++.
T Consensus 184 ~~~e~i~~~~~~i~-~Pl~~n~~~~~~~p~~s~~eL~~lGv~~v~~~~~~~~ 234 (285)
T TIGR02317 184 TSLEEFRQFAKAVK-VPLLANMTEFGKTPLFTADELREAGYKMVIYPVTAFR 234 (285)
T ss_pred CCHHHHHHHHHhcC-CCEEEEeccCCCCCCCCHHHHHHcCCcEEEEchHHHH
Confidence 34566777776653 566 34456555 4899999999999999977764
No 367
>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase. This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.
Probab=82.92 E-value=11 Score=26.81 Aligned_cols=47 Identities=21% Similarity=0.212 Sum_probs=32.5
Q ss_pred chHHHHHHHHHhCCCCcE---EEEcCCCc-ccHHHHHHcCCCEEEEeccccC
Q psy11601 15 DMMPKVKWLRENYPTLNI---EVDGGVGP-NTIDECAKAGANWIVSGTAVIN 62 (82)
Q Consensus 15 ~~~~ki~~~~~~~~~~~i---~~dGGI~~-~ni~~~~~~Gad~vv~gs~i~~ 62 (82)
...+.++++.+..+ .|+ ++.||-++ -++.+|.+.|++.++.+..++.
T Consensus 188 ~~~~ei~~~~~~~~-~P~~~nv~~~~~~p~~s~~eL~~lG~~~v~~~~~~~~ 238 (294)
T TIGR02319 188 LDVEEMKRVRDEID-APLLANMVEGGKTPWLTTKELESIGYNLAIYPLSGWM 238 (294)
T ss_pred CCHHHHHHHHHhcC-CCeeEEEEecCCCCCCCHHHHHHcCCcEEEEcHHHHH
Confidence 34566677666542 344 44555443 6899999999999999977664
No 368
>KOG4175|consensus
Probab=82.69 E-value=2.8 Score=28.96 Aligned_cols=41 Identities=20% Similarity=0.363 Sum_probs=31.1
Q ss_pred HHHHHhCCCCcEEEEcCC-CcccHHHHHHcCCCEEEEeccccC
Q psy11601 21 KWLRENYPTLNIEVDGGV-GPNTIDECAKAGANWIVSGTAVIN 62 (82)
Q Consensus 21 ~~~~~~~~~~~i~~dGGI-~~~ni~~~~~~Gad~vv~gs~i~~ 62 (82)
.++|+.-.+.|+.|-=|| ++|+++++... +|++|+||.|..
T Consensus 199 qrvrk~t~dtPlAVGFGvst~EHf~qVgsv-aDGVvvGSkiv~ 240 (268)
T KOG4175|consen 199 QRVRKATGDTPLAVGFGVSTPEHFKQVGSV-ADGVVVGSKIVK 240 (268)
T ss_pred HHHHHhcCCCceeEeeccCCHHHHHhhhhh-ccceEecHHHHH
Confidence 335555446788887676 47889999887 999999999764
No 369
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=82.42 E-value=4.1 Score=27.32 Aligned_cols=46 Identities=22% Similarity=0.283 Sum_probs=34.1
Q ss_pred CcchHHHHHHHHHhCCCCcEEEEcC-CCcccHHHHHHcCCCEEEEec
Q psy11601 13 MQDMMPKVKWLRENYPTLNIEVDGG-VGPNTIDECAKAGANWIVSGT 58 (82)
Q Consensus 13 ~~~~~~ki~~~~~~~~~~~i~~dGG-I~~~ni~~~~~~Gad~vv~gs 58 (82)
.+...+.|+++++.++.--+.-.|. ++.+.++...++||++++++.
T Consensus 45 ~~~~~~~i~~l~~~~~~~~~iGaGTV~~~~~~~~a~~aGA~fivsp~ 91 (206)
T PRK09140 45 SPDPFDSIAALVKALGDRALIGAGTVLSPEQVDRLADAGGRLIVTPN 91 (206)
T ss_pred CccHHHHHHHHHHHcCCCcEEeEEecCCHHHHHHHHHcCCCEEECCC
Confidence 3567778888888765323444454 578999999999999999864
No 370
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=82.41 E-value=8.5 Score=27.29 Aligned_cols=44 Identities=14% Similarity=0.283 Sum_probs=37.8
Q ss_pred HHHHHHHHHhCCCCcEEEEcC--CCcccHHHHHHcCCCEEEEecccc
Q psy11601 17 MPKVKWLRENYPTLNIEVDGG--VGPNTIDECAKAGANWIVSGTAVI 61 (82)
Q Consensus 17 ~~ki~~~~~~~~~~~i~~dGG--I~~~ni~~~~~~Gad~vv~gs~i~ 61 (82)
+++++++++.. ++|++.=|| +..+.++...+.|+.-|=+++.+.
T Consensus 188 ~~~l~~I~~~~-~vPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~Tel~ 233 (283)
T PRK07998 188 IPLLKRIAEVS-PVPLVIHGGSGIPPEILRSFVNYKVAKVNIASDLR 233 (283)
T ss_pred HHHHHHHHhhC-CCCEEEeCCCCCCHHHHHHHHHcCCcEEEECHHHH
Confidence 78888888876 689998885 667899999999999999999875
No 371
>PLN02885 nicotinate phosphoribosyltransferase
Probab=82.22 E-value=2 Score=33.14 Aligned_cols=36 Identities=22% Similarity=0.444 Sum_probs=31.7
Q ss_pred CCCcEEEEcCCCcccHHHHHHcC--CCEEEEeccccCC
Q psy11601 28 PTLNIEVDGGVGPNTIDECAKAG--ANWIVSGTAVINC 63 (82)
Q Consensus 28 ~~~~i~~dGGI~~~ni~~~~~~G--ad~vv~gs~i~~~ 63 (82)
.++.|++.+|++.+.+.++.+.| +|.+-+|+.+..+
T Consensus 347 ~~~kIv~Sn~Lde~~i~~L~~~g~~id~fGVGT~LvT~ 384 (545)
T PLN02885 347 GKMSITASNDINEETLDALNKQGHEIDAFGIGTHLVTC 384 (545)
T ss_pred CCeEEEEeCCCCHHHHHHHHHcCCCccEEecCCccccC
Confidence 46789999999999999999888 8999999998543
No 372
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=82.16 E-value=4.3 Score=23.98 Aligned_cols=39 Identities=23% Similarity=0.428 Sum_probs=23.0
Q ss_pred HHHHHHhCCCCcEEEEcCCCcccHH-HHHH--cCCCEEEEecc
Q psy11601 20 VKWLRENYPTLNIEVDGGVGPNTID-ECAK--AGANWIVSGTA 59 (82)
Q Consensus 20 i~~~~~~~~~~~i~~dGGI~~~ni~-~~~~--~Gad~vv~gs~ 59 (82)
++.+++..|++ ..+.||....-.+ ++.+ .|+|.++.|-+
T Consensus 72 ~~~~k~~~p~~-~iv~GG~~~t~~~~~~l~~~~~~D~vv~Geg 113 (121)
T PF02310_consen 72 ARAIKERNPNI-PIVVGGPHATADPEEILREYPGIDYVVRGEG 113 (121)
T ss_dssp HHHHHTTCTTS-EEEEEESSSGHHHHHHHHHHHTSEEEEEETT
T ss_pred HHHHHhcCCCC-EEEEECCchhcChHHHhccCcCcceecCCCh
Confidence 33455555554 5556665544333 4444 79999998843
No 373
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=82.14 E-value=11 Score=26.93 Aligned_cols=58 Identities=7% Similarity=0.059 Sum_probs=40.3
Q ss_pred HHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHHHHH
Q psy11601 19 KVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINCPDRIQAISTLKSSVQK 79 (82)
Q Consensus 19 ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~~~~ 79 (82)
-++.++..+ +.++++|=. |.+......+.|+|.+-..-.=+ .++..++++.++....+
T Consensus 103 ~~~~iK~~~-~~l~MAD~s-tleEal~a~~~Gad~I~TTl~gy-T~~~~~~~~~~~~i~~~ 160 (283)
T cd04727 103 EHHIDKHKF-KVPFVCGAR-NLGEALRRISEGAAMIRTKGEAG-TGNVVEAVRHMRAVNGE 160 (283)
T ss_pred HHHHHHHHc-CCcEEccCC-CHHHHHHHHHCCCCEEEecCCCC-CCcHHHHHHHHHHHHHH
Confidence 355566665 788888877 88888888999999886553222 35777777777665443
No 374
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=81.07 E-value=4.1 Score=31.00 Aligned_cols=45 Identities=27% Similarity=0.520 Sum_probs=32.4
Q ss_pred CCcchHHHHHHHHHhCCCCcEEEEcC--CCcccHHHHHHcCCCEEEEe
Q psy11601 12 FMQDMMPKVKWLRENYPTLNIEVDGG--VGPNTIDECAKAGANWIVSG 57 (82)
Q Consensus 12 ~~~~~~~ki~~~~~~~~~~~i~~dGG--I~~~ni~~~~~~Gad~vv~g 57 (82)
.....++.|+++++..+ -++.+.+| .+.+.+..++.+|||++.+|
T Consensus 266 ~~~~~~~~i~~ir~~~~-~~~~V~aGnV~t~e~a~~li~aGAd~I~vg 312 (502)
T PRK07107 266 YSEWQKRTLDWIREKYG-DSVKVGAGNVVDREGFRYLAEAGADFVKVG 312 (502)
T ss_pred ccHHHHHHHHHHHHhCC-CCceEEeccccCHHHHHHHHHcCCCEEEEC
Confidence 34455888999998765 23444443 35678889999999999883
No 375
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=81.07 E-value=12 Score=26.48 Aligned_cols=36 Identities=17% Similarity=0.277 Sum_probs=26.2
Q ss_pred CCCCcEEEEcCC-CcccHHHHHHcCCCEEEEeccccC
Q psy11601 27 YPTLNIEVDGGV-GPNTIDECAKAGANWIVSGTAVIN 62 (82)
Q Consensus 27 ~~~~~i~~dGGI-~~~ni~~~~~~Gad~vv~gs~i~~ 62 (82)
+|+.|+.+..+- ..-++.+|.+.|++.++.+..++.
T Consensus 209 ~p~~pl~~~~~~~~~~~~~eL~~lG~~~v~~~~~~~~ 245 (285)
T TIGR02320 209 YPRTPLVIVPTSYYTTPTDEFRDAGISVVIYANHLLR 245 (285)
T ss_pred CCCCCEEEecCCCCCCCHHHHHHcCCCEEEEhHHHHH
Confidence 446677665442 233699999999999999977764
No 376
>PTZ00187 succinyl-CoA synthetase alpha subunit; Provisional
Probab=80.86 E-value=1.9 Score=31.01 Aligned_cols=64 Identities=22% Similarity=0.143 Sum_probs=46.6
Q ss_pred ccCCCCCCCCCC---cchHHHHHHHHHhC-CC-CcEEEEcCCCcccHHHHHHcCCCEEEEeccccCCCC
Q psy11601 2 TVEPGFGGQKFM---QDMMPKVKWLRENY-PT-LNIEVDGGVGPNTIDECAKAGANWIVSGTAVINCPD 65 (82)
Q Consensus 2 ~v~pG~~gq~~~---~~~~~ki~~~~~~~-~~-~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~~d 65 (82)
.|+||.+||.+. --.++.++++.+.. .+ .-|.+-.---++-+.++.++|+..+|+.+.=|...|
T Consensus 59 GV~Pgkgg~~v~~~Gvpvy~sv~ea~~~~~~D~avI~VPa~~v~dai~Ea~~aGI~~~ViiteGfpe~d 127 (317)
T PTZ00187 59 GVNPKKAGTTHLKHGLPVFATVKEAKKATGADASVIYVPPPHAASAIIEAIEAEIPLVVCITEGIPQHD 127 (317)
T ss_pred EECCCCCCceEecCCccccCCHHHHhcccCCCEEEEecCHHHHHHHHHHHHHcCCCEEEEECCCCchhh
Confidence 389999998764 33677778877651 23 235555566678899999999999999988776555
No 377
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=80.72 E-value=7 Score=27.61 Aligned_cols=55 Identities=13% Similarity=0.084 Sum_probs=37.4
Q ss_pred HHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHH
Q psy11601 17 MPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINCPDRIQAISTLK 74 (82)
Q Consensus 17 ~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~ 74 (82)
-+.++++++..|..+|+|.=- +.+.+.++.++|+|.+.+-. |..++.++.++.++
T Consensus 176 ~~av~~~r~~~~~~kIeVEv~-tleea~ea~~~GaDiI~lDn--~~~e~l~~~v~~l~ 230 (277)
T TIGR01334 176 GGAIGRLKQTAPERKITVEAD-TIEQALTVLQASPDILQLDK--FTPQQLHHLHERLK 230 (277)
T ss_pred HHHHHHHHHhCCCCCEEEECC-CHHHHHHHHHcCcCEEEECC--CCHHHHHHHHHHHh
Confidence 344667777655444444443 99999999999999998873 44556666665553
No 378
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=80.56 E-value=4.8 Score=29.56 Aligned_cols=41 Identities=15% Similarity=0.103 Sum_probs=30.0
Q ss_pred HHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEec
Q psy11601 17 MPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGT 58 (82)
Q Consensus 17 ~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs 58 (82)
...|.++++.. ++|+.+-+-.+.+.+..+.++|||.|+.|.
T Consensus 177 p~~l~~~i~~~-~IPVI~G~V~t~e~A~~~~~aGaDgV~~G~ 217 (369)
T TIGR01304 177 PLNLKEFIGEL-DVPVIAGGVNDYTTALHLMRTGAAGVIVGP 217 (369)
T ss_pred HHHHHHHHHHC-CCCEEEeCCCCHHHHHHHHHcCCCEEEECC
Confidence 44566666554 588887445577888889999999999663
No 379
>PRK13399 fructose-1,6-bisphosphate aldolase; Provisional
Probab=80.47 E-value=10 Score=27.66 Aligned_cols=46 Identities=13% Similarity=0.250 Sum_probs=38.6
Q ss_pred hHHHHHHHHHhCCCCcEEEEcCCC-----------------------cccHHHHHHcCCCEEEEecccc
Q psy11601 16 MMPKVKWLRENYPTLNIEVDGGVG-----------------------PNTIDECAKAGANWIVSGTAVI 61 (82)
Q Consensus 16 ~~~ki~~~~~~~~~~~i~~dGGI~-----------------------~~ni~~~~~~Gad~vv~gs~i~ 61 (82)
.+++++++++..+++|++.=||-. .++++...+.|+.-|=+++.+.
T Consensus 213 ~~drl~eI~~~v~~vPLVLHGgSGvp~~~~~~~~~~g~~~~~~~g~~~e~~~kai~~GI~KINi~Tdl~ 281 (347)
T PRK13399 213 AIDRIEEIHARLPNTHLVMHGSSSVPQELQEIINAYGGKMKETYGVPVEEIQRGIKHGVRKVNIDTDIR 281 (347)
T ss_pred cHHHHHHHHhhcCCCCEEEeCCCCCCHHHHHHHHHhcCCccccCCCCHHHHHHHHHCCCeEEEeChHHH
Confidence 477888888876569999999875 6889999999999998888764
No 380
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=80.39 E-value=8.1 Score=21.83 Aligned_cols=42 Identities=24% Similarity=0.315 Sum_probs=31.1
Q ss_pred chHHHHHHHHHhCCCCcEEEEcC-CCcccHHHHHHcCCCEEEE
Q psy11601 15 DMMPKVKWLRENYPTLNIEVDGG-VGPNTIDECAKAGANWIVS 56 (82)
Q Consensus 15 ~~~~ki~~~~~~~~~~~i~~dGG-I~~~ni~~~~~~Gad~vv~ 56 (82)
+.++-++++++..+++++.+.+. -+.+...++.++|++.++.
T Consensus 57 ~~~~~~~~i~~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~ 99 (112)
T PF00072_consen 57 DGLELLEQIRQINPSIPIIVVTDEDDSDEVQEALRAGADDYLS 99 (112)
T ss_dssp BHHHHHHHHHHHTTTSEEEEEESSTSHHHHHHHHHTTESEEEE
T ss_pred cccccccccccccccccEEEecCCCCHHHHHHHHHCCCCEEEE
Confidence 56677788887777788776664 4457788899999887754
No 381
>PRK06464 phosphoenolpyruvate synthase; Validated
Probab=80.33 E-value=6.1 Score=31.74 Aligned_cols=55 Identities=7% Similarity=-0.022 Sum_probs=40.5
Q ss_pred CCCCCCCcchHHHHHHHHHh--CCCCcEEEEc---CCCcccHHHHHHcCCCEEEEecccc
Q psy11601 7 FGGQKFMQDMMPKVKWLREN--YPTLNIEVDG---GVGPNTIDECAKAGANWIVSGTAVI 61 (82)
Q Consensus 7 ~~gq~~~~~~~~ki~~~~~~--~~~~~i~~dG---GI~~~ni~~~~~~Gad~vv~gs~i~ 61 (82)
..++.+.|..++-|+++.+. ..++|+.+.| +-+++.+..+...|++.+++++...
T Consensus 718 ~~~~~~hPav~~ai~~vi~aa~~~g~~vgicge~a~~~p~~~~~l~~~G~~~ls~~~d~~ 777 (795)
T PRK06464 718 HLFDERNPAVKKLISMAIKAAKKAGKYVGICGQAPSDHPDFAEWLVEEGIDSISLNPDAV 777 (795)
T ss_pred hccCCCCHHHHHHHHHHHHHHHHcCCEEEEcCCCCCCcHHHHHHHHHCCCCEEEEcchhH
Confidence 34667788888888875442 2357777766 3338999999999999999986543
No 382
>TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype. Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle.
Probab=80.31 E-value=9.6 Score=27.89 Aligned_cols=47 Identities=15% Similarity=0.194 Sum_probs=39.5
Q ss_pred chHHHHHHHHHhCCCCcEEEEcCCC-----------------------cccHHHHHHcCCCEEEEecccc
Q psy11601 15 DMMPKVKWLRENYPTLNIEVDGGVG-----------------------PNTIDECAKAGANWIVSGTAVI 61 (82)
Q Consensus 15 ~~~~ki~~~~~~~~~~~i~~dGGI~-----------------------~~ni~~~~~~Gad~vv~gs~i~ 61 (82)
-.+++|+++++..+++|++.=||-. .+.+.+..+.|+.-|=+++.+.
T Consensus 210 Ld~~rL~eI~~~v~~vPLVLHGgSG~p~~~~~~~~~~~~~~~~~~g~p~e~i~~ai~~GI~KVNi~Tdl~ 279 (347)
T TIGR01521 210 LAIQRIEEIHARLPDTHLVMHGSSSVPQEWLDIINEYGGEIKETYGVPVEEIVEGIKYGVRKVNIDTDLR 279 (347)
T ss_pred cCHHHHHHHHccCCCCCEEEeCCCCCchHhhHHHHhhcccccccCCCCHHHHHHHHHCCCeeEEeChHHH
Confidence 3577888888876569999999875 6899999999999999988875
No 383
>PRK12656 fructose-6-phosphate aldolase; Reviewed
Probab=80.19 E-value=12 Score=25.62 Aligned_cols=54 Identities=13% Similarity=0.176 Sum_probs=41.4
Q ss_pred hCCCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccC----CCCHHHHHHHHHHHHHH
Q psy11601 26 NYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVIN----CPDRIQAISTLKSSVQK 79 (82)
Q Consensus 26 ~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~----~~d~~~~~~~l~~~~~~ 79 (82)
..++..|.+.-=-+.+++.++..+|+|.+-+.-.++. .+-..+.+++|.+-+++
T Consensus 158 ~~~~tkILaAS~r~~~~v~~a~~~G~d~vTvp~~vl~~l~~~p~t~~~~~~F~~dw~~ 215 (222)
T PRK12656 158 ENSDSKILAASFKNVAQVNKAFALGAQAVTAGPDVFEAAFAMPSIQKAVDDFADDWEA 215 (222)
T ss_pred cCCCCEEEEEecCCHHHHHHHHHcCCCEEecCHHHHHHHhcCCcHHHHHHHHHHHHHH
Confidence 3456888888878888888888999999999877654 46667777777766553
No 384
>PF04476 DUF556: Protein of unknown function (DUF556); InterPro: IPR007565 The proteins in this entry are functionally uncharacterised.
Probab=79.95 E-value=4.7 Score=27.97 Aligned_cols=49 Identities=18% Similarity=0.220 Sum_probs=39.0
Q ss_pred CCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCCCCH------HHHHHHHHHHH
Q psy11601 29 TLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINCPDR------IQAISTLKSSV 77 (82)
Q Consensus 29 ~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~~d~------~~~~~~l~~~~ 77 (82)
.+.+...|.++.+.++.+...++|++-.-+++....|- .+.++++++.+
T Consensus 180 gL~~aLAGSL~~~di~~L~~l~pD~lGfRGAvC~ggdR~~G~id~~~V~~lr~~~ 234 (235)
T PF04476_consen 180 GLMCALAGSLRFEDIPRLKRLGPDILGFRGAVCGGGDRRAGRIDPELVAALRALM 234 (235)
T ss_pred cchhhccccCChhHHHHHHhcCCCEEEechhhCCCCCcCccccCHHHHHHHHHhc
Confidence 57889999999999999999999999999998865221 24566666544
No 385
>PRK09240 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=79.91 E-value=3.7 Score=29.78 Aligned_cols=61 Identities=16% Similarity=0.108 Sum_probs=41.1
Q ss_pred hHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEe--cc-------cc--C-CCCHHHHHHHHHHHH
Q psy11601 16 MMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSG--TA-------VI--N-CPDRIQAISTLKSSV 77 (82)
Q Consensus 16 ~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~g--s~-------i~--~-~~d~~~~~~~l~~~~ 77 (82)
..+-++.+++..|++.+.+ |.++.+.+..+.++|++.+.++ |. |. + ..++.+.++.++...
T Consensus 140 l~~~i~~Ik~~~p~i~i~~-g~lt~e~l~~Lk~aGv~r~~i~lET~~~~~~~~i~~~g~~h~~~~rl~~i~~a~ 212 (371)
T PRK09240 140 IRRALPIAREYFSSVSIEV-QPLSEEEYAELVELGLDGVTVYQETYNPATYAKHHLRGPKRDFEYRLETPERAG 212 (371)
T ss_pred HHHHHHHHHHhCCCceecc-CCCCHHHHHHHHHcCCCEEEEEEecCCHHHHHHhCcCCCCCCHHHHHHHHHHHH
Confidence 3344555666555555654 8899999999999999999977 32 22 1 236676666666544
No 386
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=79.70 E-value=11 Score=26.03 Aligned_cols=48 Identities=23% Similarity=0.191 Sum_probs=35.4
Q ss_pred chHHHHHHHHHhCCCCcEE-EEcCCCcccHHHHHHcCCCEEEEeccccCC
Q psy11601 15 DMMPKVKWLRENYPTLNIE-VDGGVGPNTIDECAKAGANWIVSGTAVINC 63 (82)
Q Consensus 15 ~~~~ki~~~~~~~~~~~i~-~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~ 63 (82)
..++.|+.+++.. ++||. =|==+.+..+.+...+|||.+.+....+..
T Consensus 98 g~~~~l~~v~~~v-~iPvl~kdfi~~~~qi~~a~~~GAD~VlLi~~~l~~ 146 (260)
T PRK00278 98 GSLEYLRAARAAV-SLPVLRKDFIIDPYQIYEARAAGADAILLIVAALDD 146 (260)
T ss_pred CCHHHHHHHHHhc-CCCEEeeeecCCHHHHHHHHHcCCCEEEEEeccCCH
Confidence 4478888888764 46655 343456667889999999999999877643
No 387
>COG2086 FixA Electron transfer flavoprotein, beta subunit [Energy production and conversion]
Probab=79.40 E-value=12 Score=26.30 Aligned_cols=69 Identities=17% Similarity=0.187 Sum_probs=47.3
Q ss_pred CCcchHHHHHHHHHh--CCCCcEEEEcCCCcccH-HHHHHcCCCEEEEecc-ccCCCCHHHHHHHHHHHHHHh
Q psy11601 12 FMQDMMPKVKWLREN--YPTLNIEVDGGVGPNTI-DECAKAGANWIVSGTA-VINCPDRIQAISTLKSSVQKY 80 (82)
Q Consensus 12 ~~~~~~~ki~~~~~~--~~~~~i~~dGGI~~~ni-~~~~~~Gad~vv~gs~-i~~~~d~~~~~~~l~~~~~~~ 80 (82)
|....+|.--++++. ...+.+.-.|+-..++. ..++..|+|-.++.+. =|...|+..+...|.+.++++
T Consensus 38 ~D~~AvEeAlrLke~~~~~eV~vlt~Gp~~a~~~lr~aLAmGaDraili~d~~~~~~d~~~ta~~Laa~~~~~ 110 (260)
T COG2086 38 FDLNAVEEALRLKEKGYGGEVTVLTMGPPQAEEALREALAMGADRAILITDRAFAGADPLATAKALAAAVKKI 110 (260)
T ss_pred hhHHHHHHHHHhhccCCCceEEEEEecchhhHHHHHHHHhcCCCeEEEEecccccCccHHHHHHHHHHHHHhc
Confidence 444555555556652 23455666776665554 5669999999999874 577889998888888877653
No 388
>cd07382 MPP_DR1281 Deinococcus radiodurans DR1281 and related proteins, metallophosphatase domain. DR1281 is an uncharacterized Deinococcus radiodurans protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=78.91 E-value=7 Score=27.15 Aligned_cols=54 Identities=20% Similarity=0.404 Sum_probs=37.3
Q ss_pred hHHHHHHHHHhCCCCcEEE-------Ec-CCCcccHHHHHHcCCCEEEEeccccCCCCHHHHH
Q psy11601 16 MMPKVKWLRENYPTLNIEV-------DG-GVGPNTIDECAKAGANWIVSGTAVINCPDRIQAI 70 (82)
Q Consensus 16 ~~~ki~~~~~~~~~~~i~~-------dG-GI~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~ 70 (82)
..+.|.++++.++ ..+++ -| |++..++..+..+|+|.+.+|-=.|...+....+
T Consensus 17 ~~~~l~~lk~~~~-~D~vi~NgEn~~gg~gl~~~~~~~L~~~G~D~iTlGNH~fD~gel~~~l 78 (255)
T cd07382 17 VKEHLPKLKKEYK-IDFVIANGENAAGGKGITPKIAKELLSAGVDVITMGNHTWDKKEILDFI 78 (255)
T ss_pred HHHHHHHHHHHCC-CCEEEECCccccCCCCCCHHHHHHHHhcCCCEEEecccccCcchHHHHH
Confidence 4455666666542 22333 34 6999999999999999999998788755444433
No 389
>PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases. It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B ....
Probab=78.90 E-value=3.5 Score=28.99 Aligned_cols=48 Identities=25% Similarity=0.354 Sum_probs=33.5
Q ss_pred CCCCCCcchHHHHHHHHHhCCCCcEEEEcCC-------CcccHHHHHHcCCCEEEEe
Q psy11601 8 GGQKFMQDMMPKVKWLRENYPTLNIEVDGGV-------GPNTIDECAKAGANWIVSG 57 (82)
Q Consensus 8 ~gq~~~~~~~~ki~~~~~~~~~~~i~~dGGI-------~~~ni~~~~~~Gad~vv~g 57 (82)
+|+.+..+-+++|.++.+.+ ++++..||-= ....++++. .++|.+.++
T Consensus 138 GG~~~s~~el~ai~~~a~~~-gl~lhmDGARl~~a~~~~~~~~~e~~-~~~D~v~~~ 192 (290)
T PF01212_consen 138 GGTVYSLEELRAISELAREH-GLPLHMDGARLANAAAALGVSLAEIA-AGADSVSFG 192 (290)
T ss_dssp TSB---HHHHHHHHHHHHHH-T-EEEEEETTHHHHHCHHHHHHHHHH-TTSSEEEEE
T ss_pred CCeeCCHHHHHHHHHHHHhC-ceEEEEehhhHHHhhhcccccHHHHh-hhCCEEEEE
Confidence 48999999999999987765 6999999982 223345555 899999887
No 390
>COG2197 CitB Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=78.76 E-value=9.1 Score=25.46 Aligned_cols=44 Identities=20% Similarity=0.271 Sum_probs=34.0
Q ss_pred chHHHHHHHHHhCCCCc-EEEEcCCCcccHHHHHHcCCCEEEEec
Q psy11601 15 DMMPKVKWLRENYPTLN-IEVDGGVGPNTIDECAKAGANWIVSGT 58 (82)
Q Consensus 15 ~~~~ki~~~~~~~~~~~-i~~dGGI~~~ni~~~~~~Gad~vv~gs 58 (82)
+.++-++++++..|+++ ++...--+.+.+.+..++||++++.-+
T Consensus 60 ~G~e~~~~l~~~~p~~~vvvlt~~~~~~~v~~al~~Ga~Gyl~K~ 104 (211)
T COG2197 60 DGLEALKQLRARGPDIKVVVLTAHDDPAYVIRALRAGADGYLLKD 104 (211)
T ss_pred ChHHHHHHHHHHCCCCcEEEEeccCCHHHHHHHHHcCCCEEEeCC
Confidence 46777788887777766 455666778888899999999997754
No 391
>cd08206 RuBisCO_large_I_II_III Ribulose bisphosphate carboxylase large chain, Form I,II,III. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubico-like proteins (RLP), are missing critical active site residues.
Probab=78.72 E-value=23 Score=26.49 Aligned_cols=52 Identities=10% Similarity=0.129 Sum_probs=41.3
Q ss_pred CCcEEEEcCCCcccHHHHH-HcCCCEEEEe-ccccC-CCCHHHHHHHHHHHHHHh
Q psy11601 29 TLNIEVDGGVGPNTIDECA-KAGANWIVSG-TAVIN-CPDRIQAISTLKSSVQKY 80 (82)
Q Consensus 29 ~~~i~~dGGI~~~ni~~~~-~~Gad~vv~g-s~i~~-~~d~~~~~~~l~~~~~~~ 80 (82)
++-=+..||+++..++++. ..|.|.+... +.+++ ++.+++-++.+++.++..
T Consensus 337 ~~~Pv~sGG~~~~~~p~~~~~~G~Dvil~~GGGi~gHP~G~~aGa~A~rqA~ea~ 391 (414)
T cd08206 337 PVFPVASGGLHPGRMPALIEILGDDVILQFGGGTHGHPDGPAAGAKANRQALEAW 391 (414)
T ss_pred CcEEecCCccChhHHHHHHHHhCCceEEecCCceecCCCChhhHHHHHHHHHHHH
Confidence 3456889999999999665 5788877665 77998 578999999999888754
No 392
>PRK09426 methylmalonyl-CoA mutase; Reviewed
Probab=78.62 E-value=14 Score=29.47 Aligned_cols=51 Identities=20% Similarity=0.100 Sum_probs=36.3
Q ss_pred HHHhC-CCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHHHH
Q psy11601 23 LRENY-PTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINCPDRIQAISTLKSSVQ 78 (82)
Q Consensus 23 ~~~~~-~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~~~ 78 (82)
+++.. +++++.+-|.+.++....+.++|+|.++ +-..|..+.++.+++.+.
T Consensus 657 Lk~~G~~~v~vl~GG~~~~~~~~~l~~aGvD~~i-----~~g~d~~~~L~~l~~~l~ 708 (714)
T PRK09426 657 LKKLGREDIMVVVGGVIPPQDYDFLYEAGVAAIF-----GPGTVIADAAIDLLELLS 708 (714)
T ss_pred HHhcCCCCcEEEEeCCCChhhHHHHHhCCCCEEE-----CCCCCHHHHHHHHHHHHH
Confidence 44443 2466666666688888999999998763 334588888888887774
No 393
>cd08205 RuBisCO_IV_RLP Ribulose bisphosphate carboxylase like proteins, Rubisco-Form IV. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions, like for example 2,3-diketo-5-methylthiopentyl-1-phosphate enolase or 5-methyl
Probab=78.39 E-value=13 Score=27.20 Aligned_cols=64 Identities=11% Similarity=0.199 Sum_probs=43.7
Q ss_pred CCcchHHHHHHHHH-h---CCCCcEEEEcCCCcccHHHHHHc-CCCEEEEe-ccccCC-CCHHHHHHHHHH
Q psy11601 12 FMQDMMPKVKWLRE-N---YPTLNIEVDGGVGPNTIDECAKA-GANWIVSG-TAVINC-PDRIQAISTLKS 75 (82)
Q Consensus 12 ~~~~~~~ki~~~~~-~---~~~~~i~~dGGI~~~ni~~~~~~-Gad~vv~g-s~i~~~-~d~~~~~~~l~~ 75 (82)
+.++.+.++.+... . ....-=+..||++...++++.+. |.|.+... +.|++. +.+.+-++.+++
T Consensus 296 ~~~~~~~~la~~~~~~~~~iK~~~Pv~sgG~~~~~v~~l~~~~G~dv~~~~GGgi~gHp~g~~ag~~a~r~ 366 (367)
T cd08205 296 FSREECLAIARACRRPLGGIKPALPVPSGGMHPGRVPELYRDYGPDVILLAGGGILGHPDGAAAGVRAFRQ 366 (367)
T ss_pred CCHHHHHHHHHHHhCccccCCCceeeccCCCCHHHHHHHHHHhCCcEEEEcCchhcCCCCChHHHHHHHhc
Confidence 46666766665322 1 11222456889999999988776 88876655 669984 578888888775
No 394
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=78.36 E-value=11 Score=25.37 Aligned_cols=47 Identities=15% Similarity=0.138 Sum_probs=35.5
Q ss_pred CCcchHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEec
Q psy11601 12 FMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGT 58 (82)
Q Consensus 12 ~~~~~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs 58 (82)
..++..+.++++++..++.++.+..--..+.++.+.++|++.+-+.-
T Consensus 49 ~~~~~~~~i~~l~~~~~~~~~~~l~~~~~~~i~~a~~~g~~~i~i~~ 95 (265)
T cd03174 49 QMEDDWEVLRAIRKLVPNVKLQALVRNREKGIERALEAGVDEVRIFD 95 (265)
T ss_pred cCCCHHHHHHHHHhccCCcEEEEEccCchhhHHHHHhCCcCEEEEEE
Confidence 55677888888888765667665554448899999999998876653
No 395
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=78.19 E-value=13 Score=23.09 Aligned_cols=42 Identities=19% Similarity=0.309 Sum_probs=34.8
Q ss_pred CCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHH
Q psy11601 29 TLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINCPDRIQAISTLKS 75 (82)
Q Consensus 29 ~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~ 75 (82)
.+.+++.++|.+.-+..|.++|++.+..-+ .++.++++.+.+
T Consensus 65 gvdvvi~~~iG~~a~~~l~~~GIkv~~~~~-----~~V~e~i~~~~~ 106 (121)
T COG1433 65 GVDVVIASNIGPNAYNALKAAGIKVYVAPG-----GTVEEAIKAFLE 106 (121)
T ss_pred CCCEEEECccCHHHHHHHHHcCcEEEecCC-----CCHHHHHHHHhc
Confidence 589999999999999999999999887655 466777766653
No 396
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=77.94 E-value=16 Score=23.53 Aligned_cols=56 Identities=23% Similarity=0.266 Sum_probs=38.1
Q ss_pred HHHHH-HHHhC-CCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCCC-CHHHHHHHHHHHHHH
Q psy11601 18 PKVKW-LRENY-PTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINCP-DRIQAISTLKSSVQK 79 (82)
Q Consensus 18 ~ki~~-~~~~~-~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~~-d~~~~~~~l~~~~~~ 79 (82)
.++.+ +++.. .++.+++=|-|.++++..+.+.|++.+ |.+. +..+.+..+++.+.+
T Consensus 81 ~~lve~lre~G~~~i~v~~GGvip~~d~~~l~~~G~~~i------f~pgt~~~~~~~~v~~~l~~ 139 (143)
T COG2185 81 PGLVEALREAGVEDILVVVGGVIPPGDYQELKEMGVDRI------FGPGTPIEEALSDLLTRLGA 139 (143)
T ss_pred HHHHHHHHHhCCcceEEeecCccCchhHHHHHHhCccee------eCCCCCHHHHHHHHHHHHHh
Confidence 33333 44443 346667777788999999999998854 6643 566777777776653
No 397
>cd08208 RLP_Photo Ribulose bisphosphate carboxylase like proteins from phototrophic bacteria. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions. The specific function of this subgroup is unknown.
Probab=77.91 E-value=20 Score=26.90 Aligned_cols=52 Identities=12% Similarity=0.119 Sum_probs=40.2
Q ss_pred CCcEEEEcCCCcccHHHH-HHcC-CCEEE-EeccccC-CCCHHHHHHHHHHHHHHh
Q psy11601 29 TLNIEVDGGVGPNTIDEC-AKAG-ANWIV-SGTAVIN-CPDRIQAISTLKSSVQKY 80 (82)
Q Consensus 29 ~~~i~~dGGI~~~ni~~~-~~~G-ad~vv-~gs~i~~-~~d~~~~~~~l~~~~~~~ 80 (82)
++-=+..||+++..++++ ...| .|.+. .|..+++ ++.+++-++.+++.++..
T Consensus 347 ~~~Pv~SGG~~~~~~p~~~~~~G~~Dvil~~GGGi~gHP~G~aaGa~A~RqA~ea~ 402 (424)
T cd08208 347 PCLPVPGGSDSALTLQTVYEKVGNVDFGFVPGRGVFGHPMGPKAGAKSIRQAWEAI 402 (424)
T ss_pred CceEecccCCCHhHHHHHHHHhCCCCEEEecCccccCCCCChHHHHHHHHHHHHHH
Confidence 344678999999999955 4568 58764 5688998 567999999999887753
No 398
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=77.88 E-value=2.4 Score=29.31 Aligned_cols=50 Identities=20% Similarity=0.433 Sum_probs=32.8
Q ss_pred CCcEEEEcCCCcccHHHH----HHcCCCEEEEe--ccccCC---CCHHHHHHHHHHHHH
Q psy11601 29 TLNIEVDGGVGPNTIDEC----AKAGANWIVSG--TAVINC---PDRIQAISTLKSSVQ 78 (82)
Q Consensus 29 ~~~i~~dGGI~~~ni~~~----~~~Gad~vv~g--s~i~~~---~d~~~~~~~l~~~~~ 78 (82)
.++++-.|||+.+|++++ +++|+..++=- |.|... ..--+.+++|...++
T Consensus 177 g~~lEPTGGIdl~Nf~~I~~i~ldaGv~kviPHIYssiIDk~tG~TrpedV~~l~~~~k 235 (236)
T TIGR03581 177 GFYLEPTGGIDLDNFEEIVQIALDAGVEKVIPHVYSSIIDKETGNTRVEDVKQLLAIVK 235 (236)
T ss_pred CCccCCCCCccHHhHHHHHHHHHHcCCCeeccccceeccccccCCCCHHHHHHHHHHhh
Confidence 588999999999999865 56898877633 445432 222345555555443
No 399
>cd02068 radical_SAM_B12_BD B12 binding domain_like associated with radical SAM domain. This domain shows similarity with B12 (adenosylcobamide) binding domains found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase, but it lacks the signature motif Asp-X-His-X-X-Gly, which contains the histidine that acts as a cobalt ligand. The function of this domain remains unclear.
Probab=77.80 E-value=6.5 Score=23.74 Aligned_cols=41 Identities=27% Similarity=0.397 Sum_probs=27.2
Q ss_pred hHHHHHHHHHhCCCCcEEEEcCCCcccHHH--HHHcCCCEEEEe
Q psy11601 16 MMPKVKWLRENYPTLNIEVDGGVGPNTIDE--CAKAGANWIVSG 57 (82)
Q Consensus 16 ~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~--~~~~Gad~vv~g 57 (82)
..+-++.+|+..|+ ...+.||.......+ +...++|.++.|
T Consensus 55 ~~~~~~~ik~~~p~-~~iv~GG~~~t~~p~~~~~~~~~D~vv~G 97 (127)
T cd02068 55 ALELAKIAKEVLPN-VIVVVGGPHATFFPEEILEEPGVDFVVIG 97 (127)
T ss_pred HHHHHHHHHHHCCC-CEEEECCcchhhCHHHHhcCCCCCEEEEC
Confidence 34445557777765 466777766654443 467889988887
No 400
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=77.76 E-value=9.9 Score=24.80 Aligned_cols=55 Identities=27% Similarity=0.307 Sum_probs=34.6
Q ss_pred HHHHHHHHHhCCCCc-EEEEcCCCcccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHH
Q psy11601 17 MPKVKWLRENYPTLN-IEVDGGVGPNTIDECAKAGANWIVSGTAVINCPDRIQAISTLK 74 (82)
Q Consensus 17 ~~ki~~~~~~~~~~~-i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~ 74 (82)
.+-++++++..|+.+ |.+..- +.+.+.+++++|+|++-+-.. ..++.++.++.++
T Consensus 67 ~~av~~~~~~~~~~~~I~VEv~-~~ee~~ea~~~g~d~I~lD~~--~~~~~~~~v~~l~ 122 (169)
T PF01729_consen 67 EEAVKAARQAAPEKKKIEVEVE-NLEEAEEALEAGADIIMLDNM--SPEDLKEAVEELR 122 (169)
T ss_dssp HHHHHHHHHHSTTTSEEEEEES-SHHHHHHHHHTT-SEEEEES---CHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCceEEEEcC-CHHHHHHHHHhCCCEEEecCc--CHHHHHHHHHHHh
Confidence 344566666655543 666665 688899999999999988754 2244455555443
No 401
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=77.60 E-value=13 Score=28.25 Aligned_cols=63 Identities=19% Similarity=0.278 Sum_probs=45.9
Q ss_pred CcchHHHHHHHHHhCCCCcEE--EEcC--CCc----cc-----HHHHHHcCCCEEEEeccccCCCCHHHHHHHHHH
Q psy11601 13 MQDMMPKVKWLRENYPTLNIE--VDGG--VGP----NT-----IDECAKAGANWIVSGTAVINCPDRIQAISTLKS 75 (82)
Q Consensus 13 ~~~~~~ki~~~~~~~~~~~i~--~dGG--I~~----~n-----i~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~ 75 (82)
.++.+++++.+++..|+.++. ..|- +.- ++ ++...+.|+|+|=+..++...++....++..++
T Consensus 68 ~edpwerlr~~r~~~~nt~lqmLlRG~n~vgy~~ypddvv~~fv~~a~~~Gidi~Rifd~lnd~~n~~~ai~~ak~ 143 (468)
T PRK12581 68 NEDPWERLRTLKKGLPNTRLQMLLRGQNLLGYRHYADDIVDKFISLSAQNGIDVFRIFDALNDPRNIQQALRAVKK 143 (468)
T ss_pred CCCHHHHHHHHHHhCCCCceeeeeccccccCccCCcchHHHHHHHHHHHCCCCEEEEcccCCCHHHHHHHHHHHHH
Confidence 478899999999987776644 4430 222 34 888899999999988888766666666666554
No 402
>COG1921 SelA Selenocysteine synthase [seryl-tRNASer selenium transferase] [Amino acid transport and metabolism]
Probab=77.59 E-value=9.6 Score=28.39 Aligned_cols=47 Identities=15% Similarity=0.160 Sum_probs=35.9
Q ss_pred HHHHHHHHHhCCCCcEEEEcCC-----CcccHHHHHHcCCCEEEEecc-ccCCC
Q psy11601 17 MPKVKWLRENYPTLNIEVDGGV-----GPNTIDECAKAGANWIVSGTA-VINCP 64 (82)
Q Consensus 17 ~~ki~~~~~~~~~~~i~~dGGI-----~~~ni~~~~~~Gad~vv~gs~-i~~~~ 64 (82)
.+.+.++.+.. ++|+.+|=|- +..+++++.+.|+|.++-... +|+.+
T Consensus 176 ~~~l~~ia~~~-~lpvivD~aSg~~v~~e~~l~~~la~GaDLV~~SgdKllgGP 228 (395)
T COG1921 176 EEELVEIAHEK-GLPVIVDLASGALVDKEPDLREALALGADLVSFSGDKLLGGP 228 (395)
T ss_pred HHHHHHHHHHc-CCCEEEecCCccccccccchhHHHhcCCCEEEEecchhcCCC
Confidence 34466655553 6999999887 689999999999998876654 77644
No 403
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=77.54 E-value=6.4 Score=26.90 Aligned_cols=44 Identities=25% Similarity=0.186 Sum_probs=30.8
Q ss_pred CcchHHHHHHHHH----hCCCCcEEEEcC-CCcccHHHHHHcCCCEEEEe
Q psy11601 13 MQDMMPKVKWLRE----NYPTLNIEVDGG-VGPNTIDECAKAGANWIVSG 57 (82)
Q Consensus 13 ~~~~~~ki~~~~~----~~~~~~i~~dGG-I~~~ni~~~~~~Gad~vv~g 57 (82)
.|..++-|+++++ .+|++ +.-.|- ++.+.++...++||+++|+=
T Consensus 50 tp~a~~~i~~l~~~~~~~~p~~-~vGaGTVl~~e~a~~a~~aGA~FiVsP 98 (222)
T PRK07114 50 GDFAHEVFAELVKYAAKELPGM-ILGVGSIVDAATAALYIQLGANFIVTP 98 (222)
T ss_pred CCcHHHHHHHHHHHHHhhCCCe-EEeeEeCcCHHHHHHHHHcCCCEEECC
Confidence 3567777877753 33444 344444 58899999999999998754
No 404
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=77.43 E-value=9.2 Score=24.68 Aligned_cols=44 Identities=32% Similarity=0.564 Sum_probs=21.8
Q ss_pred cchHHHHHH-HHHhCCCCcEEE--EcCCCccc----HHHHHHcCCCEEEEe
Q psy11601 14 QDMMPKVKW-LRENYPTLNIEV--DGGVGPNT----IDECAKAGANWIVSG 57 (82)
Q Consensus 14 ~~~~~ki~~-~~~~~~~~~i~~--dGGI~~~n----i~~~~~~Gad~vv~g 57 (82)
|+.++++.+ +++.+|++.|+. +|--+.+. +..+.+.++|.+.+|
T Consensus 56 ~~~~~~~~~~l~~~yp~l~i~g~~~g~~~~~~~~~i~~~I~~~~pdiv~vg 106 (171)
T cd06533 56 PEVLEKAAERLRARYPGLKIVGYHHGYFGPEEEEEIIERINASGADILFVG 106 (171)
T ss_pred HHHHHHHHHHHHHHCCCcEEEEecCCCCChhhHHHHHHHHHHcCCCEEEEE
Confidence 344444432 445555555443 44444433 445556666666555
No 405
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=77.38 E-value=17 Score=24.77 Aligned_cols=53 Identities=19% Similarity=0.011 Sum_probs=37.2
Q ss_pred CCCCCCcchHHHHHHHHHhCCCCcEEEEcCCC-cccHHHHHHcC-CCEEEEecccc
Q psy11601 8 GGQKFMQDMMPKVKWLRENYPTLNIEVDGGVG-PNTIDECAKAG-ANWIVSGTAVI 61 (82)
Q Consensus 8 ~gq~~~~~~~~ki~~~~~~~~~~~i~~dGGI~-~~ni~~~~~~G-ad~vv~gs~i~ 61 (82)
--|++.+..++.++++++.. ++||.+++.+. .+.+.++++.+ +|.+..--...
T Consensus 160 iEeP~~~~d~~~~~~l~~~~-~ipia~dE~~~~~~~~~~~i~~~~~d~v~~k~~~~ 214 (265)
T cd03315 160 VEQPLPADDLEGRAALARAT-DTPIMADESAFTPHDAFRELALGAADAVNIKTAKT 214 (265)
T ss_pred EECCCCcccHHHHHHHHhhC-CCCEEECCCCCCHHHHHHHHHhCCCCEEEEecccc
Confidence 34667777778888888775 68999999874 56677776655 77776653333
No 406
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=77.32 E-value=17 Score=25.39 Aligned_cols=53 Identities=15% Similarity=0.053 Sum_probs=38.4
Q ss_pred CCCCCcchHHHHHHHHHhCCCCcEEEEcCC-CcccHHHHHH-cCCCEEEEeccccC
Q psy11601 9 GQKFMQDMMPKVKWLRENYPTLNIEVDGGV-GPNTIDECAK-AGANWIVSGTAVIN 62 (82)
Q Consensus 9 gq~~~~~~~~ki~~~~~~~~~~~i~~dGGI-~~~ni~~~~~-~Gad~vv~gs~i~~ 62 (82)
-|++.++.++-++++++.. ++||..++.+ +.+.+..+.+ .++|++..-...++
T Consensus 209 EeP~~~~d~~~~~~L~~~~-~ipIa~~E~~~~~~~~~~~~~~~~~d~v~~~~~~~G 263 (316)
T cd03319 209 EQPVPAGDDDGLAYLRDKS-PLPIMADESCFSAADAARLAGGGAYDGINIKLMKTG 263 (316)
T ss_pred ECCCCCCCHHHHHHHHhcC-CCCEEEeCCCCCHHHHHHHHhcCCCCEEEEeccccC
Confidence 5677777788888888865 5899999886 4566777666 56777776655544
No 407
>PF03841 SelA: L-seryl-tRNA selenium transferase; InterPro: IPR018319 In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This family describes SelA. A close homologue of SelA is found in Helicobacter pylori, but all other required elements are missing and the protein is shorter at the N terminus than SelA from other species. The trusted cut-off is set above the score generated for Helicobacter pylori putative SelA.; PDB: 2AEV_A 2AEU_A.
Probab=77.27 E-value=2.1 Score=31.45 Aligned_cols=48 Identities=23% Similarity=0.305 Sum_probs=24.8
Q ss_pred hHHHHHHHHHhCCCCcEEEEcCC------------CcccHHHHHHcCCCEEEEecc-ccCCC
Q psy11601 16 MMPKVKWLRENYPTLNIEVDGGV------------GPNTIDECAKAGANWIVSGTA-VINCP 64 (82)
Q Consensus 16 ~~~ki~~~~~~~~~~~i~~dGGI------------~~~ni~~~~~~Gad~vv~gs~-i~~~~ 64 (82)
.++.+.++.+.+ ++|+.+|=|- ...++.++.+.|+|.++-... +++.+
T Consensus 158 ~~~el~~la~~~-~lp~i~DlgsG~l~dl~~~gl~~Ep~v~~~~~~GaDlV~fSGdKlLGGP 218 (367)
T PF03841_consen 158 SLEELAELAKEH-GLPVIVDLGSGLLVDLSPYGLPDEPTVQEYLAAGADLVTFSGDKLLGGP 218 (367)
T ss_dssp ---HHHHHHHHH-T--EEEE-TTHHHHHHHTT----------CCCCT-SEEEEETTSSSSS-
T ss_pred cHHHHHHHHhhc-CCcEEEECCCCCCcCcccccCccccHHHHHhhcCCCEEEEECCCcCCCC
Confidence 566667755543 6899999887 368889999999999887644 77654
No 408
>COG3684 LacD Tagatose-1,6-bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=77.04 E-value=11 Score=26.95 Aligned_cols=49 Identities=18% Similarity=0.277 Sum_probs=35.3
Q ss_pred CcchHHHHHHHHHhCCCCc-EEEEcCCCcccH----HHHHHcCCCEEEEeccccC
Q psy11601 13 MQDMMPKVKWLRENYPTLN-IEVDGGVGPNTI----DECAKAGANWIVSGTAVIN 62 (82)
Q Consensus 13 ~~~~~~ki~~~~~~~~~~~-i~~dGGI~~~ni----~~~~~~Gad~vv~gs~i~~ 62 (82)
.++....+++..... ++| ++..-|++.+.+ .-..++||++|..|++.|.
T Consensus 215 ~~ea~~~f~~~~~~~-~lP~i~LSAGV~~klF~~tv~fA~eaGAsGvL~GRAtWa 268 (306)
T COG3684 215 QEEAAAAFQRQNDHI-NLPWIYLSAGVSAKLFQRTVRFAMEAGASGVLAGRATWA 268 (306)
T ss_pred cHHHHHHHHHhhcCC-CCCeEEEecCccHHHhHHHHHHHHHcCCceeEechhhhh
Confidence 445555555444433 455 888999997655 4567899999999999996
No 409
>smart00876 BATS Biotin and Thiamin Synthesis associated domain. Biotin synthase (BioB), , catalyses the last step of the biotin biosynthetic pathway. The reaction consists in the introduction of a sulphur atom into dethiobiotin. BioB functions as a homodimer PUBMED:12482614. Thiamin synthesis if a complex process involving at least six gene products (ThiFSGH, ThiI and ThiJ). Two of the proteins required for the biosynthesis of the thiazole moiety of thiamine (vitamin B(1)) are ThiG and ThiH (this entry) and form a heterodimerPUBMED:12650933. Both of these reactions are thought of involve the binding of co-factors, and both function as dimers PUBMED:12482614, PUBMED:12650933. This domain therefore may be involved in co-factor binding or dimerisation.
Probab=76.92 E-value=12 Score=21.78 Aligned_cols=52 Identities=21% Similarity=0.292 Sum_probs=33.5
Q ss_pred HHHHHHhCCCCcEEEEcCCC--cccHHHH-HHcCCCEEEEec-cccC-CCCHHHHHH
Q psy11601 20 VKWLRENYPTLNIEVDGGVG--PNTIDEC-AKAGANWIVSGT-AVIN-CPDRIQAIS 71 (82)
Q Consensus 20 i~~~~~~~~~~~i~~dGGI~--~~ni~~~-~~~Gad~vv~gs-~i~~-~~d~~~~~~ 71 (82)
|.-+|-..|+..|.+.||-. ....... ..+||+.++.|- .+.. ...+.+.++
T Consensus 29 ia~~Rl~~P~~~I~~~~gr~~~~~~~~~~~l~aGan~~~~G~~~lt~~g~~~~~d~~ 85 (94)
T smart00876 29 IAAARLALPDAGIRLSTGREALLRDLQALCFSAGANSIFGGDKYLTTSGPRSADDVA 85 (94)
T ss_pred HHHHHHHCCCcceEEecCCchhcchHHHHhhhccCceeeeCCccccCCCcCcHHHHH
Confidence 33345567888999999874 2345555 799999999985 5543 223444443
No 410
>PRK10840 transcriptional regulator RcsB; Provisional
Probab=76.66 E-value=9.7 Score=24.63 Aligned_cols=43 Identities=21% Similarity=0.320 Sum_probs=31.8
Q ss_pred chHHHHHHHHHhCCCCcEEEEcC-CCcccHHHHHHcCCCEEEEe
Q psy11601 15 DMMPKVKWLRENYPTLNIEVDGG-VGPNTIDECAKAGANWIVSG 57 (82)
Q Consensus 15 ~~~~ki~~~~~~~~~~~i~~dGG-I~~~ni~~~~~~Gad~vv~g 57 (82)
..++-++++++..|++++.+..+ -+.+.+..+.+.|+++++.-
T Consensus 66 ~g~~~~~~l~~~~~~~~iIvls~~~~~~~~~~a~~~Ga~~yl~K 109 (216)
T PRK10840 66 DGITLIKYIKRHFPSLSIIVLTMNNNPAILSAVLDLDIEGIVLK 109 (216)
T ss_pred CHHHHHHHHHHHCCCCcEEEEEecCCHHHHHHHHHCCCeEEEEC
Confidence 46777888887767777665544 45666778899999998764
No 411
>PLN02561 triosephosphate isomerase
Probab=76.58 E-value=9.3 Score=26.63 Aligned_cols=36 Identities=22% Similarity=0.218 Sum_probs=30.3
Q ss_pred CCCcEEEEcCCCcccHHHH-HHcCCCEEEEeccccCC
Q psy11601 28 PTLNIEVDGGVGPNTIDEC-AKAGANWIVSGTAVINC 63 (82)
Q Consensus 28 ~~~~i~~dGGI~~~ni~~~-~~~Gad~vv~gs~i~~~ 63 (82)
++++|.-=|+|+++|+.++ ...++|++-+|++=..+
T Consensus 203 ~~i~ILYGGSV~~~N~~~l~~~~~iDG~LVG~ASL~~ 239 (253)
T PLN02561 203 ATTRIIYGGSVTGANCKELAAQPDVDGFLVGGASLKP 239 (253)
T ss_pred ccceEEEeCCcCHHHHHHHhcCCCCCeEEEehHhhHH
Confidence 3589999999999998876 46689999999887653
No 412
>TIGR02351 thiH thiazole biosynthesis protein ThiH. Members this protein family are the ThiH protein of thiamine biosynthesis, a homolog of the BioB protein of biotin biosynthesis. Genes for the this protein generally are found in operons with other thiamin biosynthesis genes.
Probab=76.50 E-value=17 Score=26.35 Aligned_cols=61 Identities=20% Similarity=0.203 Sum_probs=40.1
Q ss_pred hHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEe--cc---ccC-------CCCHHHHHHHHHHHH
Q psy11601 16 MMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSG--TA---VIN-------CPDRIQAISTLKSSV 77 (82)
Q Consensus 16 ~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~g--s~---i~~-------~~d~~~~~~~l~~~~ 77 (82)
..+-++.+++..|.+.+.+ +-++.+.+..|.++|++.+.++ |. .|. ..++...++.++...
T Consensus 139 l~eii~~Ik~~~p~i~Iei-~~lt~e~~~~Lk~aGv~r~~i~lET~~~~~y~~i~~~g~~h~~~~rl~~i~~a~ 211 (366)
T TIGR02351 139 IAEAIKLAREYFSSLAIEV-QPLNEEEYKKLVEAGLDGVTVYQETYNEKKYKKHHLAGKKKDFRYRLNTPERAA 211 (366)
T ss_pred HHHHHHHHHHhCCcccccc-ccCCHHHHHHHHHcCCCEEEEEeecCCHHHHHhcCcCCCCCCHHHHHHHHHHHH
Confidence 4444556666655555654 4689999999999999999886 32 221 235666666555443
No 413
>PRK08508 biotin synthase; Provisional
Probab=76.34 E-value=17 Score=25.21 Aligned_cols=53 Identities=32% Similarity=0.344 Sum_probs=37.4
Q ss_pred HHHhCCCCcEEEEcCCC---cccHHHHHHcCCCEEEEeccccC-CCCHHHHHHHHHH
Q psy11601 23 LRENYPTLNIEVDGGVG---PNTIDECAKAGANWIVSGTAVIN-CPDRIQAISTLKS 75 (82)
Q Consensus 23 ~~~~~~~~~i~~dGGI~---~~ni~~~~~~Gad~vv~gs~i~~-~~d~~~~~~~l~~ 75 (82)
+|-..|+..|-+.||-. .+.-..+..+|||.+.+|-++.. ..++.+..+-+++
T Consensus 213 ~Rl~lp~~~i~~~~gr~~~~~~~~~~~~~~g~n~~~~g~~lt~~g~~~~~d~~~~~~ 269 (279)
T PRK08508 213 AKEALPNARLMVAGGREVVFGERQYEIFEAGANAIVIGDYLTTKGEAPKKDIEKLKS 269 (279)
T ss_pred HHHHCCCceeeecCChhhhchhhHHHHHhcCCcceeecCcccCCCCChHHHHHHHHH
Confidence 34456788899999862 23445678899999999999876 3456665555543
No 414
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=76.05 E-value=6.9 Score=25.73 Aligned_cols=45 Identities=20% Similarity=0.243 Sum_probs=30.5
Q ss_pred cchHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEec
Q psy11601 14 QDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGT 58 (82)
Q Consensus 14 ~~~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs 58 (82)
+...+.++.+++..+.+.+-+..=++.+.++...++|||+++++.
T Consensus 48 ~~~~e~~~~~~~~~~~~~~g~gtvl~~d~~~~A~~~gAdgv~~p~ 92 (187)
T PRK07455 48 DQPAELISQLREKLPECIIGTGTILTLEDLEEAIAAGAQFCFTPH 92 (187)
T ss_pred CCHHHHHHHHHHhCCCcEEeEEEEEcHHHHHHHHHcCCCEEECCC
Confidence 345666777777654333333333567899999999999997764
No 415
>PRK12653 fructose-6-phosphate aldolase; Reviewed
Probab=75.47 E-value=17 Score=24.80 Aligned_cols=53 Identities=19% Similarity=0.198 Sum_probs=40.5
Q ss_pred CCCCcEEEEcCCCcccHHHHHHcCCCEEEEecccc----CCCCHHHHHHHHHHHHHH
Q psy11601 27 YPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVI----NCPDRIQAISTLKSSVQK 79 (82)
Q Consensus 27 ~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~----~~~d~~~~~~~l~~~~~~ 79 (82)
.++..|.+..=-+.+.+.++..+|+|.+-+.-.++ ..+-..+.++.|.+.+++
T Consensus 157 ~~~tkILaAS~r~~~~v~~~~~~G~d~vTip~~vl~~l~~~p~t~~~~~~F~~dw~~ 213 (220)
T PRK12653 157 APQAKVLAASFKTPRQALDCLLAGCESITLPLDVAQQMISYPAVDAAVAKFEQDWQG 213 (220)
T ss_pred CCCcEEEEEecCCHHHHHHHHHcCCCEEECCHHHHHHHHcCCchHHHHHHHHHHHHH
Confidence 45677888777788888888899999999886665 466677788888776554
No 416
>PRK12342 hypothetical protein; Provisional
Probab=75.02 E-value=22 Score=24.73 Aligned_cols=68 Identities=10% Similarity=0.129 Sum_probs=45.2
Q ss_pred CCcchHHHHHHHHHhCCCCcEEEEcCCCc--ccH-HHHHHcCCCEEEEecc-ccCCCCHHHHHHHHHHHHHH
Q psy11601 12 FMQDMMPKVKWLRENYPTLNIEVDGGVGP--NTI-DECAKAGANWIVSGTA-VINCPDRIQAISTLKSSVQK 79 (82)
Q Consensus 12 ~~~~~~~ki~~~~~~~~~~~i~~dGGI~~--~ni-~~~~~~Gad~vv~gs~-i~~~~d~~~~~~~l~~~~~~ 79 (82)
|..+.+|.--++++....+.+...|.-.. ..+ ++.+..|||-.+..+. -|...|+..+...|.+.+++
T Consensus 36 ~D~~AlE~AlrLk~~g~~Vtvls~Gp~~a~~~~l~r~alamGaD~avli~d~~~~g~D~~ata~~La~~i~~ 107 (254)
T PRK12342 36 FDLNAIEAASQLATDGDEIAALTVGGSLLQNSKVRKDVLSRGPHSLYLVQDAQLEHALPLDTAKALAAAIEK 107 (254)
T ss_pred hhHHHHHHHHHHhhcCCEEEEEEeCCChHhHHHHHHHHHHcCCCEEEEEecCccCCCCHHHHHHHHHHHHHH
Confidence 33444555445554333455667777653 333 7799999999999873 67667888788777777765
No 417
>PRK06256 biotin synthase; Validated
Probab=74.92 E-value=17 Score=25.57 Aligned_cols=55 Identities=16% Similarity=0.312 Sum_probs=35.5
Q ss_pred HHHHHHhCCCCcEEEEcCC--CcccHHHHHHcCCCEEEEeccccCC-CCHHHHHHHHH
Q psy11601 20 VKWLRENYPTLNIEVDGGV--GPNTIDECAKAGANWIVSGTAVINC-PDRIQAISTLK 74 (82)
Q Consensus 20 i~~~~~~~~~~~i~~dGGI--~~~ni~~~~~~Gad~vv~gs~i~~~-~d~~~~~~~l~ 74 (82)
+.-+|-..|+..|.+.||= ...+...+.-+||+.+.+|.++... .++.+..+-++
T Consensus 261 ia~~Rl~~p~~~I~~~~gr~~~~~~~~~~~~~g~~~~~~g~~lt~~g~~~~~d~~~~~ 318 (336)
T PRK06256 261 IAIFRLINPDKEIRIAGGREVNLRSLQPLGLGGANSVIVGNYLTTVGQPATADLDMIE 318 (336)
T ss_pred HHHHHHHCCCCeeEecCchhhhchhhHHHHhccCceeeECCcccCCCCChHHHHHHHH
Confidence 3334555788889999984 3334433333699999999998863 44555444443
No 418
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=74.49 E-value=13 Score=24.35 Aligned_cols=44 Identities=30% Similarity=0.535 Sum_probs=21.0
Q ss_pred cchHHHHHH-HHHhCCCCcEEE-EcCCCccc----HHHHHHcCCCEEEEe
Q psy11601 14 QDMMPKVKW-LRENYPTLNIEV-DGGVGPNT----IDECAKAGANWIVSG 57 (82)
Q Consensus 14 ~~~~~ki~~-~~~~~~~~~i~~-dGGI~~~n----i~~~~~~Gad~vv~g 57 (82)
|++++++.+ +++.+|++.|+. +|..+.+. ++.+.++++|.+.+|
T Consensus 58 ~~v~~~~~~~l~~~yP~l~i~g~~g~f~~~~~~~i~~~I~~s~~dil~Vg 107 (177)
T TIGR00696 58 PDVLQQLKVKLIKEYPKLKIVGAFGPLEPEERKAALAKIARSGAGIVFVG 107 (177)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEECCCCChHHHHHHHHHHHHcCCCEEEEE
Confidence 344555443 444455444332 34444332 445555666666555
No 419
>PRK14566 triosephosphate isomerase; Provisional
Probab=74.47 E-value=12 Score=26.33 Aligned_cols=41 Identities=17% Similarity=0.235 Sum_probs=32.7
Q ss_pred CCcEEEEcCCCcccHHHHHH-cCCCEEEEeccccCCCCHHHH
Q psy11601 29 TLNIEVDGGVGPNTIDECAK-AGANWIVSGTAVINCPDRIQA 69 (82)
Q Consensus 29 ~~~i~~dGGI~~~ni~~~~~-~Gad~vv~gs~i~~~~d~~~~ 69 (82)
+++|.==|.++++|+.++.. .++|++-+|++=+.+++..+-
T Consensus 212 ~~rIlYGGSV~~~N~~~l~~~~dIDG~LVGgASL~~~~F~~I 253 (260)
T PRK14566 212 NIRILYGGSVTPSNAADLFAQPDVDGGLIGGASLNSTEFLSL 253 (260)
T ss_pred cceEEecCCCCHhHHHHHhcCCCCCeEEechHhcCHHHHHHH
Confidence 57899999999999998754 569999999887766544433
No 420
>cd08212 RuBisCO_large_I Ribulose bisphosphate carboxylase large chain, Form I. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV , which differ in their taxonomic distribution and subunit composition. Form I is the most abundant class, present in plants, algae, and bacteria, and forms large complexes composed of 8 large and 8 small subunits.
Probab=74.39 E-value=7.7 Score=29.30 Aligned_cols=50 Identities=8% Similarity=0.091 Sum_probs=39.7
Q ss_pred CcEEEEcCCCcccHHHHHH-cCCCEEEEe-ccccC-CCCHHHHHHHHHHHHHH
Q psy11601 30 LNIEVDGGVGPNTIDECAK-AGANWIVSG-TAVIN-CPDRIQAISTLKSSVQK 79 (82)
Q Consensus 30 ~~i~~dGGI~~~ni~~~~~-~Gad~vv~g-s~i~~-~~d~~~~~~~l~~~~~~ 79 (82)
+-=+..||+++..++++.+ .|.|.+... ..|++ ++.+++-++.+++.++-
T Consensus 351 ~~Pv~sGG~~~~~vp~~~~~~G~Dvil~~GGGi~gHP~G~~aGa~A~rqA~ea 403 (450)
T cd08212 351 VMPVASGGIHVGQMHQLIEIFGDDVVLQFGGGTIGHPWGIAAGATANRVALEA 403 (450)
T ss_pred ceEecCCCCCHHHHHHHHHhcCCceEEecCcceecCCCChhHHHHHHHHHHHH
Confidence 4457889999999997765 498876654 77998 56799899999988764
No 421
>COG1891 Uncharacterized protein conserved in archaea [Function unknown]
Probab=74.17 E-value=10 Score=25.72 Aligned_cols=34 Identities=12% Similarity=0.170 Sum_probs=30.7
Q ss_pred CCcEEEEcCCCcccHHHHHHcCCCEEEEeccccC
Q psy11601 29 TLNIEVDGGVGPNTIDECAKAGANWIVSGTAVIN 62 (82)
Q Consensus 29 ~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~ 62 (82)
.+.+...|.++.++++.+.+.|+|++-+-++...
T Consensus 180 GL~~AlAGs~~~ehlp~l~eig~DivGvRgaaC~ 213 (235)
T COG1891 180 GLEVALAGSLKFEHLPILKEIGPDIVGVRGAACE 213 (235)
T ss_pred chHHHhccccccccchHHHHhCCCeeeecchhcc
Confidence 5788999999999999999999999988877765
No 422
>PRK12655 fructose-6-phosphate aldolase; Reviewed
Probab=74.16 E-value=21 Score=24.32 Aligned_cols=52 Identities=21% Similarity=0.202 Sum_probs=40.0
Q ss_pred CCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccC----CCCHHHHHHHHHHHHHH
Q psy11601 28 PTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVIN----CPDRIQAISTLKSSVQK 79 (82)
Q Consensus 28 ~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~----~~d~~~~~~~l~~~~~~ 79 (82)
++..|.+..=-+.+.+.++..+|+|.+-+.-.++. .+-..+.+++|.+.+++
T Consensus 158 ~~tkILaAS~r~~~~v~~~~~~G~d~vTip~~vl~~l~~~p~t~~~~~~F~~dw~~ 213 (220)
T PRK12655 158 PESMVLAASFKTPRQALDCLLAGCQSITLPLDVAQQMLNTPAVESAIEKFEQDWQA 213 (220)
T ss_pred CCcEEEEEecCCHHHHHHHHHcCCCEEECCHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 56778887777788888888999999998866654 56677788888776553
No 423
>PRK07084 fructose-bisphosphate aldolase; Provisional
Probab=74.00 E-value=17 Score=26.27 Aligned_cols=47 Identities=13% Similarity=0.104 Sum_probs=37.6
Q ss_pred chHHHHHHHHHhCCCCcEEEEcCC-----------------------CcccHHHHHHcCCCEEEEecccc
Q psy11601 15 DMMPKVKWLRENYPTLNIEVDGGV-----------------------GPNTIDECAKAGANWIVSGTAVI 61 (82)
Q Consensus 15 ~~~~ki~~~~~~~~~~~i~~dGGI-----------------------~~~ni~~~~~~Gad~vv~gs~i~ 61 (82)
-.++.|+++++..+++|++.=||- ..++++...+.|+.-|=.++.+.
T Consensus 203 Ld~d~L~~I~~~~~~vPLVLHGgSg~~~~~~~~~~~~g~~~~~~~Gi~~e~~~kai~~GI~KINi~Tdl~ 272 (321)
T PRK07084 203 LRFDILEEIEKRIPGFPIVLHGSSSVPQEYVKTINEYGGKLKDAIGIPEEQLRKAAKSAVCKINIDSDGR 272 (321)
T ss_pred cCHHHHHHHHHhcCCCCEEEeCCCCCcHHHHHHHHHhcCccccCCCCCHHHHHHHHHcCCceeccchHHH
Confidence 357778888877656899888864 56899999999999998888764
No 424
>PRK09549 mtnW 2,3-diketo-5-methylthiopentyl-1-phosphate enolase; Reviewed
Probab=73.99 E-value=25 Score=26.25 Aligned_cols=52 Identities=8% Similarity=0.122 Sum_probs=41.1
Q ss_pred CCcEEEEcCCCcccHHHHH-HcCCCEEEE-eccccC-CCCHHHHHHHHHHHHHHh
Q psy11601 29 TLNIEVDGGVGPNTIDECA-KAGANWIVS-GTAVIN-CPDRIQAISTLKSSVQKY 80 (82)
Q Consensus 29 ~~~i~~dGGI~~~ni~~~~-~~Gad~vv~-gs~i~~-~~d~~~~~~~l~~~~~~~ 80 (82)
.+-=+..||+++..++++. ..|.|.+.. |..+++ ++.+++-++.+++.++..
T Consensus 324 ~~~Pv~sGG~~~~~~p~~~~~~G~D~il~~GGgi~gHp~G~~aGa~A~rqA~ea~ 378 (407)
T PRK09549 324 RSFPVPSAGIHPGLVPLLIRDFGKDVVINAGGGIHGHPNGAQGGGKAFRAAIDAV 378 (407)
T ss_pred ccEEeecCCCChhHHHHHHHHhCCceEEecCCceecCCCCchhHHHHHHHHHHHH
Confidence 3556889999999999765 568887665 477998 578999999999887753
No 425
>PRK08444 hypothetical protein; Provisional
Probab=73.93 E-value=9.7 Score=27.63 Aligned_cols=46 Identities=17% Similarity=0.392 Sum_probs=33.9
Q ss_pred hHHHHHHHHHhCCCCcEEE-----------EcCCCc-ccHHHHHHcCCCEEEEec-ccc
Q psy11601 16 MMPKVKWLRENYPTLNIEV-----------DGGVGP-NTIDECAKAGANWIVSGT-AVI 61 (82)
Q Consensus 16 ~~~ki~~~~~~~~~~~i~~-----------dGGI~~-~ni~~~~~~Gad~vv~gs-~i~ 61 (82)
..+-++.+++..|++.+.+ .-|.+. +.+..++++|+|.+--++ .+|
T Consensus 115 y~e~ir~Ik~~~p~i~i~a~s~~Ei~~~a~~~g~~~~e~l~~LkeAGl~~~~g~~aEi~ 173 (353)
T PRK08444 115 YLEIFKKIKEAYPNLHVKAMTAAEVDFLSRKFGKSYEEVLEDMLEYGVDSMPGGGAEIF 173 (353)
T ss_pred HHHHHHHHHHHCCCceEeeCCHHHHHHHHHHcCCCHHHHHHHHHHhCcccCCCCCchhc
Confidence 3444666777777888887 556665 899999999999876643 476
No 426
>cd08210 RLP_RrRLP Ribulose bisphosphate carboxylase like proteins (RLPs) similar to R.rubrum RLP. RLP from Rhodospirillum rubrum plays a role in an uncharacterized sulfur salvage pathway and has been shown to catalyze a novel isomerization reaction that converts 5-methylthio-d-ribulose 1-phosphate to a 3:1 mixture of 1-methylthioxylulose 5-phosphate and 1-methylthioribulose 5-phosphate.
Probab=73.67 E-value=13 Score=27.21 Aligned_cols=66 Identities=9% Similarity=0.112 Sum_probs=44.3
Q ss_pred CCCcchHHHHHHHH-HhC---CCCcEEEEcCCCcccHHHHHHc-CCCEEEEe-ccccCCC-CHHHHHHHHHHH
Q psy11601 11 KFMQDMMPKVKWLR-ENY---PTLNIEVDGGVGPNTIDECAKA-GANWIVSG-TAVINCP-DRIQAISTLKSS 76 (82)
Q Consensus 11 ~~~~~~~~ki~~~~-~~~---~~~~i~~dGGI~~~ni~~~~~~-Gad~vv~g-s~i~~~~-d~~~~~~~l~~~ 76 (82)
.+.++.+.++.+.. ... ...-=+..||++...++++.+. |.|.++.. +.|++.+ .+++-++.+++.
T Consensus 291 ~~~~e~~~~ia~~~~~~~~~iK~~~Pv~sgG~~~~~v~~l~~~~G~Dvil~aGGgi~gHp~g~~ag~~a~rqa 363 (364)
T cd08210 291 GFSREECQAIADACRRPMGGLKPILPAPGGGMSVERAPEMVELYGPDVMLLIGGSLLRAGDDLTENTRAFVEA 363 (364)
T ss_pred cCCHHHHHHHHHHhcCCccccCCCcCcCCCCcCHHHHHHHHHHcCCcEEEEccccccCCCCChHHHHHHHHhh
Confidence 35566666666532 211 1122346789999999988776 88866655 6699855 589988888875
No 427
>cd01985 ETF The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=73.51 E-value=21 Score=22.83 Aligned_cols=67 Identities=12% Similarity=0.018 Sum_probs=41.6
Q ss_pred CCcchHHHHHHHHHhC---CCCcEEEEcCCCcccH-HHHHHcCCCEEEEec-cccCCCCHHHHHHHHHHHHH
Q psy11601 12 FMQDMMPKVKWLRENY---PTLNIEVDGGVGPNTI-DECAKAGANWIVSGT-AVINCPDRIQAISTLKSSVQ 78 (82)
Q Consensus 12 ~~~~~~~ki~~~~~~~---~~~~i~~dGGI~~~ni-~~~~~~Gad~vv~gs-~i~~~~d~~~~~~~l~~~~~ 78 (82)
..+..++-+...+++. ..+...+.|+-..+.. ..+...|+|-+.... .-+...++....+.+.+.++
T Consensus 17 l~~~~~e~l~~A~~l~~~~~~v~~v~~G~~~~~~~~~~~~~~Gad~v~~~~~~~~~~~~~~~~a~~l~~~i~ 88 (181)
T cd01985 17 LNPLDLEAVEAALRLKEYGGEVTALVIGPPAAEVALREALAMGADKVLLVEDPALAGYDPEATAKALAALIK 88 (181)
T ss_pred cCHhhHHHHHHHHHHhhcCCeEEEEEECChHHHHHHHHHHHhCCCEEEEEecCcccCCChHHHHHHHHHHHH
Confidence 5556666666655553 3466777777555555 677899999888764 34555556555555555544
No 428
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=73.18 E-value=22 Score=25.25 Aligned_cols=46 Identities=13% Similarity=0.156 Sum_probs=38.1
Q ss_pred chHHHHHHHHHhCCCCcEEEEcC--CCcccHHHHHHcCCCEEEEecccc
Q psy11601 15 DMMPKVKWLRENYPTLNIEVDGG--VGPNTIDECAKAGANWIVSGTAVI 61 (82)
Q Consensus 15 ~~~~ki~~~~~~~~~~~i~~dGG--I~~~ni~~~~~~Gad~vv~gs~i~ 61 (82)
-.++++++|++.. ++|++.=|| +..++++...+.|+.-|=+++.+.
T Consensus 189 Ldfd~l~~I~~~~-~vPLVLHGgSG~~~e~~~kai~~GI~KiNi~T~l~ 236 (286)
T PRK12738 189 IDFQRLAEIREVV-DVPLVLHGASDVPDEFVRRTIELGVTKVNVATELK 236 (286)
T ss_pred CCHHHHHHHHHHh-CCCEEEeCCCCCCHHHHHHHHHcCCeEEEeCcHHH
Confidence 3478888888876 688888875 677999999999999999988875
No 429
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=73.02 E-value=21 Score=22.55 Aligned_cols=49 Identities=20% Similarity=0.148 Sum_probs=28.3
Q ss_pred HHHhCCCCcEEEEcC---CCcccHH----HHHHcCCCEEEEeccccCCC-CHHHHHHHHHHHH
Q psy11601 23 LRENYPTLNIEVDGG---VGPNTID----ECAKAGANWIVSGTAVINCP-DRIQAISTLKSSV 77 (82)
Q Consensus 23 ~~~~~~~~~i~~dGG---I~~~ni~----~~~~~Gad~vv~gs~i~~~~-d~~~~~~~l~~~~ 77 (82)
+++....-+.++.|| |..+... .+.+.|++ .+|.+. .+.+.+..+++.+
T Consensus 76 l~~~gl~~~~vivGG~~vi~~~d~~~~~~~l~~~Gv~------~vF~pgt~~~~iv~~l~~~~ 132 (134)
T TIGR01501 76 CDEAGLEGILLYVGGNLVVGKQDFPDVEKRFKEMGFD------RVFAPGTPPEVVIADLKKDL 132 (134)
T ss_pred HHHCCCCCCEEEecCCcCcChhhhHHHHHHHHHcCCC------EEECcCCCHHHHHHHHHHHh
Confidence 444433234567888 4555554 58888865 557643 4555556566544
No 430
>PLN02623 pyruvate kinase
Probab=72.95 E-value=24 Score=27.66 Aligned_cols=38 Identities=11% Similarity=0.172 Sum_probs=32.4
Q ss_pred ccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHHHH
Q psy11601 41 NTIDECAKAGANWIVSGTAVINCPDRIQAISTLKSSVQ 78 (82)
Q Consensus 41 ~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~~~ 78 (82)
..+..+...|+|.+++++...-..-|.++++.|.++..
T Consensus 401 ~Dva~av~dG~d~vmLs~Eta~G~yPveaV~~m~~I~~ 438 (581)
T PLN02623 401 SDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVAL 438 (581)
T ss_pred HHHHHHHHcCCCEEEecchhhcCcCHHHHHHHHHHHHH
Confidence 48888999999999999888777889989888887654
No 431
>PHA02594 nadV nicotinamide phosphoribosyl transferase; Provisional
Probab=72.90 E-value=4.9 Score=30.51 Aligned_cols=35 Identities=11% Similarity=0.239 Sum_probs=29.9
Q ss_pred CCCcEEEEcCCCcccHHHHH----HcC--CC--EEEEeccccC
Q psy11601 28 PTLNIEVDGGVGPNTIDECA----KAG--AN--WIVSGTAVIN 62 (82)
Q Consensus 28 ~~~~i~~dGGI~~~ni~~~~----~~G--ad--~vv~gs~i~~ 62 (82)
+++.|.+-+||+.+.+.++. +.| ++ .|-+|+.+..
T Consensus 333 ~~v~Ii~gd~ide~~i~~il~~L~~~G~~a~n~~fGvGt~l~q 375 (470)
T PHA02594 333 EHVRLIQGDGITLERINRILTRMKENGFASENVAFGMGGGLLQ 375 (470)
T ss_pred CCeEEEEcCCCCHHHHHHHHHHHHHCCCCCCcceEecCcccee
Confidence 67899999999999999954 678 77 8888888876
No 432
>PLN02347 GMP synthetase
Probab=72.47 E-value=7.7 Score=29.81 Aligned_cols=72 Identities=11% Similarity=0.213 Sum_probs=42.1
Q ss_pred CCCCCCCCCcchHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHc--CC--CEEEEeccccCCCCHHHHHHHHHHH
Q psy11601 5 PGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKA--GA--NWIVSGTAVINCPDRIQAISTLKSS 76 (82)
Q Consensus 5 pG~~gq~~~~~~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~--Ga--d~vv~gs~i~~~~d~~~~~~~l~~~ 76 (82)
|.+.-+.|..+.++++++..+...++-+...||++-..+..++.. |- -.+.+-+.+....+..+..+.+.+.
T Consensus 207 ~~~~~~~~~~~~i~~i~~~~~~~~~vvvalSGGVDSsvla~l~~~alG~~v~av~id~g~~~~~E~~~~~~~~a~~ 282 (536)
T PLN02347 207 ADWKMQDVLEEQIELIKATVGPDEHVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLRYKEQERVMETFKRD 282 (536)
T ss_pred CCcCcchHHHHHHHHHHHHhccCCeEEEEecCChhHHHHHHHHHHHhCCcEEEEEEeCCCCChhHHHHHHHHHHHH
Confidence 444444555544555554333223578999999999988877655 43 3334446677655555555556543
No 433
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=72.17 E-value=30 Score=24.08 Aligned_cols=68 Identities=13% Similarity=0.113 Sum_probs=46.9
Q ss_pred CCcchHHHHHHHHHhC--CCCcEEEEcCCCcc---cHHHHHHcCCCEEEEec-cccCCCCHHHHHHHHHHHHHH
Q psy11601 12 FMQDMMPKVKWLRENY--PTLNIEVDGGVGPN---TIDECAKAGANWIVSGT-AVINCPDRIQAISTLKSSVQK 79 (82)
Q Consensus 12 ~~~~~~~ki~~~~~~~--~~~~i~~dGGI~~~---ni~~~~~~Gad~vv~gs-~i~~~~d~~~~~~~l~~~~~~ 79 (82)
|..+.+|.--++++.. ..+.+.-.|.-..+ .+++.++.|||-.+..+ .-|...|+..+...|.+.+++
T Consensus 37 ~D~~AlE~Alrlke~~~g~~Vtvvs~Gp~~a~~~~~lr~aLAmGaD~avli~d~~~~g~D~~~tA~~La~ai~~ 110 (256)
T PRK03359 37 YDLNAIEAACQLKQQAAEAQVTALSVGGKALTNAKGRKDVLSRGPDELIVVIDDQFEQALPQQTASALAAAAQK 110 (256)
T ss_pred hhHHHHHHHHHHhhhcCCCEEEEEEECCcchhhHHHHHHHHHcCCCEEEEEecCcccCcCHHHHHHHHHHHHHH
Confidence 3445555555566653 25667777876633 48999999999877775 356666888888888877765
No 434
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=72.14 E-value=30 Score=24.59 Aligned_cols=47 Identities=17% Similarity=0.222 Sum_probs=32.7
Q ss_pred chHHHHHHHHHhCCCCcE---EEEcCCCc-ccHHHHHHcCCCEEEEeccccC
Q psy11601 15 DMMPKVKWLRENYPTLNI---EVDGGVGP-NTIDECAKAGANWIVSGTAVIN 62 (82)
Q Consensus 15 ~~~~ki~~~~~~~~~~~i---~~dGGI~~-~ni~~~~~~Gad~vv~gs~i~~ 62 (82)
...+.++++.+.. +.|+ ...+|-++ -++++|.+.|++.++.+...+.
T Consensus 189 ~~~~~i~~~~~~~-~~Pl~~n~~~~~~~p~~s~~~L~~lGv~~v~~~~~~~~ 239 (292)
T PRK11320 189 TELEMYRRFADAV-KVPILANITEFGATPLFTTEELASAGVAMVLYPLSAFR 239 (292)
T ss_pred CCHHHHHHHHHhc-CCCEEEEeccCCCCCCCCHHHHHHcCCcEEEEChHHHH
Confidence 3567777777655 3565 33455443 4799999999999999977653
No 435
>TIGR01417 PTS_I_fam phosphoenolpyruvate-protein phosphotransferase. This model recognizes a distinct clade of phophoenolpyruvate (PEP)-dependent enzymes. Most members are known or deduced to function as the phosphoenolpyruvate-protein phosphotransferase (or enzyme I) of PTS sugar transport systems. However, some species with both a member of this family and a homolog of the phosphocarrier protein HPr lack a IIC component able to serve as a permease. An HPr homolog designated NPr has been implicated in the regulation of nitrogen assimilation, which demonstrates that not all phosphotransferase system components are associated directly with PTS transport.
Probab=71.94 E-value=10 Score=29.31 Aligned_cols=57 Identities=11% Similarity=0.017 Sum_probs=43.8
Q ss_pred CCCCCCCCCcchHHHHHHHHHh--CCCCcEEEEc--CCCcccHHHHHHcCCCEEEEecccc
Q psy11601 5 PGFGGQKFMQDMMPKVKWLREN--YPTLNIEVDG--GVGPNTIDECAKAGANWIVSGTAVI 61 (82)
Q Consensus 5 pG~~gq~~~~~~~~ki~~~~~~--~~~~~i~~dG--GI~~~ni~~~~~~Gad~vv~gs~i~ 61 (82)
-|+-++.+.|..++-|+++.+. ..++|+.+-| .-+++-++.+...|++.|+++..-.
T Consensus 469 l~~~~~~~hPaV~~~i~~vi~~a~~~g~~v~vCGe~a~~p~~~~~l~~~G~~~lsv~~~~i 529 (565)
T TIGR01417 469 ISNLYQPYNPAVLRLIKLVIDAAKAEGIWVGMCGEMAGDERAIPLLLGLGLRELSMSASSI 529 (565)
T ss_pred hhcccCCCCHHHHHHHHHHHHHHHHcCCeEEEeCCcCCCHHHHHHHHHCCCCEEEEChHhH
Confidence 4666889999999888886542 2357888755 3488999999999999999996543
No 436
>TIGR03332 salvage_mtnW 2,3-diketo-5-methylthiopentyl-1-phosphate enolase. Members of this family are the methionine salvage pathway enzyme 2,3-diketo-5-methylthiopentyl-1-phosphate enolase, a homolog of RuBisCO. This protein family seems restricted to Bacillus subtilis and close relatives, where two separate proteins carry the enolase and phosphatase activities that in other species occur in a single protein, MtnC (TIGR01691).
Probab=71.36 E-value=39 Score=25.26 Aligned_cols=51 Identities=8% Similarity=0.124 Sum_probs=40.3
Q ss_pred CcEEEEcCCCcccHHHHH-HcCCCEEEEe-ccccC-CCCHHHHHHHHHHHHHHh
Q psy11601 30 LNIEVDGGVGPNTIDECA-KAGANWIVSG-TAVIN-CPDRIQAISTLKSSVQKY 80 (82)
Q Consensus 30 ~~i~~dGGI~~~ni~~~~-~~Gad~vv~g-s~i~~-~~d~~~~~~~l~~~~~~~ 80 (82)
+-=+..||+++..++++. ..|-|.+... ..+++ ++.+++-++.+++.++..
T Consensus 330 ~~Pv~sGG~~~~~~p~~~~~~G~Dvil~~GGGi~gHP~G~~aGa~A~rqA~ea~ 383 (407)
T TIGR03332 330 TFAVPSAGIHPGMVPLIMRDFGIDHIINAGGGIHGHPNGAQGGGRAFRAAIDAV 383 (407)
T ss_pred cEEecCCCcChhHHHHHHHHhCCceEEecCcccccCCCCchhhHHHHHHHHHHH
Confidence 446789999999999654 5788876655 77998 567999999999887753
No 437
>cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain. GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.
Probab=71.33 E-value=14 Score=27.07 Aligned_cols=45 Identities=27% Similarity=0.225 Sum_probs=32.0
Q ss_pred chHHHHHHHHHhCCCCcEEEEcCC--CcccHHHHHHcC-CCEEEEecc
Q psy11601 15 DMMPKVKWLRENYPTLNIEVDGGV--GPNTIDECAKAG-ANWIVSGTA 59 (82)
Q Consensus 15 ~~~~ki~~~~~~~~~~~i~~dGGI--~~~ni~~~~~~G-ad~vv~gs~ 59 (82)
+..+.|+++++..+..||.+=++. +.+.+....+.+ +|.|++...
T Consensus 200 ~l~~~I~~lr~~~~~~pV~vK~~~~~~~~~~a~~~~~~g~D~I~VsG~ 247 (392)
T cd02808 200 DLAQLIEDLREATGGKPIGVKLVAGHGEGDIAAGVAAAGADFITIDGA 247 (392)
T ss_pred HHHHHHHHHHHhCCCceEEEEECCCCCHHHHHHHHHHcCCCEEEEeCC
Confidence 347778889988754777665555 466666666666 999998754
No 438
>PRK13475 ribulose bisphosphate carboxylase; Provisional
Probab=71.19 E-value=14 Score=27.94 Aligned_cols=51 Identities=14% Similarity=0.234 Sum_probs=40.4
Q ss_pred CcEEEEcCCCcccHHHH-HHcC-CCEEEE-eccccC-CCCHHHHHHHHHHHHHHh
Q psy11601 30 LNIEVDGGVGPNTIDEC-AKAG-ANWIVS-GTAVIN-CPDRIQAISTLKSSVQKY 80 (82)
Q Consensus 30 ~~i~~dGGI~~~ni~~~-~~~G-ad~vv~-gs~i~~-~~d~~~~~~~l~~~~~~~ 80 (82)
+-=+..||+++..++++ ...| .|.+.. |..+++ ++.+++-++.+++.++..
T Consensus 363 ~~Pv~sGG~~~~~~p~~~~~~G~~Dvil~~GGGi~gHp~G~aaGa~A~rqA~ea~ 417 (443)
T PRK13475 363 TTPIISGGMNALRLPGFFDNLGHGNVINTAGGGAFGHIDGPAAGAKSLRQAYDCW 417 (443)
T ss_pred ceEecCCCCCHhHHHHHHHHhCCCCEEEEcCccccCCCCChHHHHHHHHHHHHHH
Confidence 44678999999999988 5678 576665 578998 567999999999887653
No 439
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=71.16 E-value=32 Score=23.93 Aligned_cols=73 Identities=14% Similarity=0.071 Sum_probs=39.6
Q ss_pred CCCCCCCCCCcchHHHHH---HHHHhC-CCCcEEE-EcCCCcc----cHHHHHHcCCCEEEEeccccCCCCHHHHHHHHH
Q psy11601 4 EPGFGGQKFMQDMMPKVK---WLRENY-PTLNIEV-DGGVGPN----TIDECAKAGANWIVSGTAVINCPDRIQAISTLK 74 (82)
Q Consensus 4 ~pG~~gq~~~~~~~~ki~---~~~~~~-~~~~i~~-dGGI~~~----ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~ 74 (82)
-.|..|+-+.=..-|+.+ ...+.. .++|+.+ .|..+.+ .++...++|||.+++....|...+..+..+-++
T Consensus 44 v~GstGE~~~Ls~eEr~~~~~~~~~~~~~~~~viagvg~~~t~~ai~~a~~a~~~Gad~v~v~~P~y~~~~~~~l~~~f~ 123 (293)
T PRK04147 44 VGGSTGEAFLLSTEEKKQVLEIVAEEAKGKVKLIAQVGSVNTAEAQELAKYATELGYDAISAVTPFYYPFSFEEICDYYR 123 (293)
T ss_pred ECCCccccccCCHHHHHHHHHHHHHHhCCCCCEEecCCCCCHHHHHHHHHHHHHcCCCEEEEeCCcCCCCCHHHHHHHHH
Confidence 357777766544444432 233332 2354333 2222222 245667899999999988776555444434444
Q ss_pred HH
Q psy11601 75 SS 76 (82)
Q Consensus 75 ~~ 76 (82)
+.
T Consensus 124 ~v 125 (293)
T PRK04147 124 EI 125 (293)
T ss_pred HH
Confidence 33
No 440
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=71.16 E-value=18 Score=25.70 Aligned_cols=55 Identities=13% Similarity=0.125 Sum_probs=35.1
Q ss_pred hHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCCCCHHHHHHHH
Q psy11601 16 MMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINCPDRIQAISTL 73 (82)
Q Consensus 16 ~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l 73 (82)
..+.++++++..|+.+|+|.=- +++.+.+.+++|||++.+. =|.+++.++.++.+
T Consensus 176 i~~av~~~r~~~~~~kIeVEv~-tleqa~ea~~agaDiI~LD--n~~~e~l~~av~~~ 230 (284)
T PRK06096 176 WSGAINQLRRHAPEKKIVVEAD-TPKEAIAALRAQPDVLQLD--KFSPQQATEIAQIA 230 (284)
T ss_pred HHHHHHHHHHhCCCCCEEEECC-CHHHHHHHHHcCCCEEEEC--CCCHHHHHHHHHHh
Confidence 3345666777654433444433 9999999999999999883 34444555555433
No 441
>PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=71.10 E-value=14 Score=25.73 Aligned_cols=31 Identities=35% Similarity=0.422 Sum_probs=27.3
Q ss_pred CCCcEEEEcCCCcccHHHHHHcCCCEEEEecc
Q psy11601 28 PTLNIEVDGGVGPNTIDECAKAGANWIVSGTA 59 (82)
Q Consensus 28 ~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~ 59 (82)
.++||+|. ++.++-+....++|||.+=.|..
T Consensus 60 s~lPICVS-aVep~~f~~aV~AGAdliEIGNf 90 (242)
T PF04481_consen 60 SNLPICVS-AVEPELFVAAVKAGADLIEIGNF 90 (242)
T ss_pred CCCCeEee-cCCHHHHHHHHHhCCCEEEecch
Confidence 47899997 58999999999999999999943
No 442
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=71.05 E-value=24 Score=24.94 Aligned_cols=46 Identities=13% Similarity=0.144 Sum_probs=37.2
Q ss_pred chHHHHHHHHHhCCCCcEEEEcC--CCcccHHHHHHcCCCEEEEecccc
Q psy11601 15 DMMPKVKWLRENYPTLNIEVDGG--VGPNTIDECAKAGANWIVSGTAVI 61 (82)
Q Consensus 15 ~~~~ki~~~~~~~~~~~i~~dGG--I~~~ni~~~~~~Gad~vv~gs~i~ 61 (82)
-.++.|+++++.. ++|++.=|| +..+.++.+.+.|+.-|=+++.+.
T Consensus 187 Ldf~~L~~I~~~~-~iPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~T~l~ 234 (282)
T TIGR01858 187 LDFDRLAEIREVV-DVPLVLHGASDVPDEDVRRTIELGICKVNVATELK 234 (282)
T ss_pred cCHHHHHHHHHHh-CCCeEEecCCCCCHHHHHHHHHcCCeEEEeCcHHH
Confidence 4567788887765 578888775 677999999999999998888875
No 443
>PF01645 Glu_synthase: Conserved region in glutamate synthase; InterPro: IPR002932 Ferredoxin-dependent glutamate synthases have been implicated in a number of functions including photorespiration in Arabidopsis where they may also play a role in primary nitrogen assimilation in roots []. This region is expressed as a seperate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.; GO: 0015930 glutamate synthase activity, 0016638 oxidoreductase activity, acting on the CH-NH2 group of donors, 0006537 glutamate biosynthetic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.
Probab=70.93 E-value=5.6 Score=29.23 Aligned_cols=51 Identities=20% Similarity=0.251 Sum_probs=0.0
Q ss_pred CCCCCcchHHHHHHHHHh--CCCCcEEEEcCC-CcccHHHHHHcCCCEEEEecc
Q psy11601 9 GQKFMQDMMPKVKWLREN--YPTLNIEVDGGV-GPNTIDECAKAGANWIVSGTA 59 (82)
Q Consensus 9 gq~~~~~~~~ki~~~~~~--~~~~~i~~dGGI-~~~ni~~~~~~Gad~vv~gs~ 59 (82)
|-++.....+--+.+++. ..++.+.++||+ +..++...+..|||.|.+|++
T Consensus 252 GlP~~~~l~~a~~~L~~~glr~~V~Li~sGgl~t~~dv~kalaLGAD~v~igt~ 305 (368)
T PF01645_consen 252 GLPTEYALARAHQALVKNGLRDRVSLIASGGLRTGDDVAKALALGADAVYIGTA 305 (368)
T ss_dssp ---HHHHHHHHHHHHHCTT-CCCSEEEEESS--SHHHHHHHHHCT-SEEE-SHH
T ss_pred CCcHHHHHHHHHHHHHHcCCCCceEEEEeCCccCHHHHHHHHhcCCCeeEecch
No 444
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=70.89 E-value=16 Score=25.78 Aligned_cols=53 Identities=21% Similarity=0.167 Sum_probs=33.4
Q ss_pred HHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCCCCHHHHHHHH
Q psy11601 18 PKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINCPDRIQAISTL 73 (82)
Q Consensus 18 ~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l 73 (82)
+.++++++..+..+|+|-.- +++.+.+.+++|+|++-+-.. .+++.++.++.+
T Consensus 171 ~av~~~r~~~~~~kIeVEv~-~leea~~a~~agaDiI~LDn~--~~e~l~~~v~~l 223 (278)
T PRK08385 171 EAIRRAKEFSVYKVVEVEVE-SLEDALKAAKAGADIIMLDNM--TPEEIREVIEAL 223 (278)
T ss_pred HHHHHHHHhCCCCcEEEEeC-CHHHHHHHHHcCcCEEEECCC--CHHHHHHHHHHH
Confidence 34666666654444444443 999999999999997766543 234444444444
No 445
>TIGR01418 PEP_synth phosphoenolpyruvate synthase. Also called pyruvate,water dikinase and PEP synthase. The member from Methanococcus jannaschii contains a large intein. This enzyme generates phosphoenolpyruvate (PEP) from pyruvate, hydrolyzing ATP to AMP and releasing inorganic phosphate in the process. The enzyme shows extensive homology to other enzymes that use PEP as substrate or product. This enzyme may provide PEP for gluconeogenesis, for PTS-type carbohydrate transport systems, or for other processes.
Probab=70.88 E-value=12 Score=29.98 Aligned_cols=56 Identities=7% Similarity=0.020 Sum_probs=41.8
Q ss_pred CCCCCCCCcchHHHHHHHHHh--CCCCcEEEEcC---CCcccHHHHHHcCCCEEEEecccc
Q psy11601 6 GFGGQKFMQDMMPKVKWLREN--YPTLNIEVDGG---VGPNTIDECAKAGANWIVSGTAVI 61 (82)
Q Consensus 6 G~~gq~~~~~~~~ki~~~~~~--~~~~~i~~dGG---I~~~ni~~~~~~Gad~vv~gs~i~ 61 (82)
+.-++...|..++-|+++.+. ..++++.+.|- .+++.+..+...|++.+++++...
T Consensus 710 ~~~~~~~hPaV~~~i~~vi~~a~~~g~~vgicge~~~~~p~~~~~l~~~G~~~ls~~~d~~ 770 (782)
T TIGR01418 710 AHLFDERNPAVLRLIEMAIKAAKEHGKKVGICGQAPSDYPEVVEFLVEEGIDSISLNPDAV 770 (782)
T ss_pred cccCCCCCHHHHHHHHHHHHHHHhcCCeEEEeCCCCCCCHHHHHHHHHcCCCEEEECcchH
Confidence 345677888888888886542 23577877763 278999999999999999986543
No 446
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=70.46 E-value=11 Score=25.74 Aligned_cols=52 Identities=19% Similarity=0.139 Sum_probs=32.0
Q ss_pred CCCCCCCCcchHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEecc
Q psy11601 6 GFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTA 59 (82)
Q Consensus 6 G~~gq~~~~~~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~ 59 (82)
.+.|-|.....+.++.++++..+ -.+.+-.|- .+.+......|+++.+.|.+
T Consensus 152 ~v~giK~s~~d~~~~~~~~~~~~-~~~~v~~G~-d~~~~~~l~~G~~G~i~~~~ 203 (281)
T cd00408 152 NIVGIKDSSGDLDRLTRLIALLG-PDFAVLSGD-DDLLLPALALGADGAISGAA 203 (281)
T ss_pred CEEEEEeCCCCHHHHHHHHHhcC-CCeEEEEcc-hHHHHHHHHcCCCEEEehHH
Confidence 33343444444455555444432 256777775 56777778999999999965
No 447
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=70.36 E-value=28 Score=23.79 Aligned_cols=74 Identities=14% Similarity=0.127 Sum_probs=39.8
Q ss_pred CCCCCCCCCcchHHH---HHHHHHhC-CCCcEE-EEcCCCccc----HHHHHHcCCCEEEEeccccCCCCHHHHHHHHHH
Q psy11601 5 PGFGGQKFMQDMMPK---VKWLRENY-PTLNIE-VDGGVGPNT----IDECAKAGANWIVSGTAVINCPDRIQAISTLKS 75 (82)
Q Consensus 5 pG~~gq~~~~~~~~k---i~~~~~~~-~~~~i~-~dGGI~~~n----i~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~ 75 (82)
.|..|+-+.-..=|+ ++.+++.. .++|+. -.|+.+.+. ++...+.|+|.+++....|...+..+.++-+++
T Consensus 38 ~GstGE~~~ls~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~~i~~a~~a~~~Gad~v~v~pP~y~~~~~~~~~~~~~~ 117 (281)
T cd00408 38 LGTTGEAPTLTDEERKEVIEAVVEAVAGRVPVIAGVGANSTREAIELARHAEEAGADGVLVVPPYYNKPSQEGIVAHFKA 117 (281)
T ss_pred CCCCcccccCCHHHHHHHHHHHHHHhCCCCeEEEecCCccHHHHHHHHHHHHHcCCCEEEECCCcCCCCCHHHHHHHHHH
Confidence 466665554333333 23344432 245533 333333332 235667899999999887766565555555554
Q ss_pred HHH
Q psy11601 76 SVQ 78 (82)
Q Consensus 76 ~~~ 78 (82)
..+
T Consensus 118 ia~ 120 (281)
T cd00408 118 VAD 120 (281)
T ss_pred HHh
Confidence 443
No 448
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=70.34 E-value=14 Score=28.35 Aligned_cols=62 Identities=15% Similarity=0.145 Sum_probs=41.9
Q ss_pred CcchHHHHHHHHHhCCCCcEEEEcC-------------CCcccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHH
Q psy11601 13 MQDMMPKVKWLRENYPTLNIEVDGG-------------VGPNTIDECAKAGANWIVSGTAVINCPDRIQAISTLK 74 (82)
Q Consensus 13 ~~~~~~ki~~~~~~~~~~~i~~dGG-------------I~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~ 74 (82)
.++.+++|+.+++..++.++..--- +-...++...++|+|+|=+..++..-++....++..+
T Consensus 60 ~Edpwerlr~lr~~~~nt~lqmL~Rg~N~vGy~~y~ddvv~~fv~~a~~~Gidi~RIfd~lndv~nl~~ai~~vk 134 (499)
T PRK12330 60 NEDPWERLRTFRKLMPNSRLQMLLRGQNLLGYRHYEDEVVDRFVEKSAENGMDVFRVFDALNDPRNLEHAMKAVK 134 (499)
T ss_pred CCCHHHHHHHHHHhCCCCeEEEEEcccccCCccCcchhHHHHHHHHHHHcCCCEEEEEecCChHHHHHHHHHHHH
Confidence 4788999999999887777664431 3345688888999999866655544344444444443
No 449
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=70.33 E-value=12 Score=26.56 Aligned_cols=32 Identities=38% Similarity=0.540 Sum_probs=22.4
Q ss_pred HHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEE
Q psy11601 21 KWLRENYPTLNIEVDGGVGPNTIDECAKAGANWI 54 (82)
Q Consensus 21 ~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~v 54 (82)
+.+++.. ++||.+|-- +++.++..+++||+.+
T Consensus 83 ~~l~~~~-~~~ISIDT~-~~~va~~AL~~GadiI 114 (282)
T PRK11613 83 EAIAQRF-EVWISVDTS-KPEVIRESAKAGAHII 114 (282)
T ss_pred HHHHhcC-CCeEEEECC-CHHHHHHHHHcCCCEE
Confidence 3344333 588888876 7777888888888866
No 450
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=70.04 E-value=34 Score=24.55 Aligned_cols=59 Identities=8% Similarity=0.066 Sum_probs=42.7
Q ss_pred HHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHHHHH
Q psy11601 18 PKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINCPDRIQAISTLKSSVQK 79 (82)
Q Consensus 18 ~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~~~~ 79 (82)
+.++.+++.+ +.|+++|-. |.+....-.+.|+|.+-.... -+..|+.++++.+|....+
T Consensus 111 ~~~~~~K~~f-~~~fmad~~-~l~EAlrai~~GadmI~Ttge-~gtg~v~~av~h~r~~~~~ 169 (293)
T PRK04180 111 EEYHIDKWDF-TVPFVCGAR-NLGEALRRIAEGAAMIRTKGE-AGTGNVVEAVRHMRQINGE 169 (293)
T ss_pred HHHHHHHHHc-CCCEEccCC-CHHHHHHHHHCCCCeeeccCC-CCCccHHHHHHHHHHHHHH
Confidence 3455566665 788887766 888888888999998876644 4456888888888776544
No 451
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=70.01 E-value=12 Score=26.29 Aligned_cols=55 Identities=13% Similarity=-0.025 Sum_probs=36.2
Q ss_pred CCCCCCCCCCcchHHHHHHHHHhCCCCcEEEEcCCC--cccHHHHHHcCCCEEEEecc
Q psy11601 4 EPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVG--PNTIDECAKAGANWIVSGTA 59 (82)
Q Consensus 4 ~pG~~gq~~~~~~~~ki~~~~~~~~~~~i~~dGGI~--~~ni~~~~~~Gad~vv~gs~ 59 (82)
+|...|-|.....+.++.++.+..+ -.+.+-.|-+ ...+......|+++++++.+
T Consensus 157 ~pni~giK~s~~d~~~~~~~~~~~~-~~f~vl~G~d~~e~~~~~~~~~G~~G~is~~a 213 (303)
T PRK03620 157 CPNLVGFKDGVGDIELMQRIVRALG-DRLLYLGGLPTAEVFAAAYLALGVPTYSSAVF 213 (303)
T ss_pred CCCEEEEEeCCCCHHHHHHHHHHcC-CCeEEEeCCCcchhhHHHHHhCCCCEEEecHH
Confidence 3555555555556677777665443 2577778864 34456677899999998854
No 452
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=69.97 E-value=24 Score=22.06 Aligned_cols=53 Identities=19% Similarity=0.145 Sum_probs=31.6
Q ss_pred HHHHHHhC-CCCcEEEEcCC------CcccHHHHHHcCCCEEEEeccccC-CCCHHHHHHHHHHHHH
Q psy11601 20 VKWLRENY-PTLNIEVDGGV------GPNTIDECAKAGANWIVSGTAVIN-CPDRIQAISTLKSSVQ 78 (82)
Q Consensus 20 i~~~~~~~-~~~~i~~dGGI------~~~ni~~~~~~Gad~vv~gs~i~~-~~d~~~~~~~l~~~~~ 78 (82)
++++++.. +++++.+-|.+ -.+..+.+.+.|++ .+|. ..++.+.+..+++.++
T Consensus 75 ~~~L~~~~~~~~~i~vGG~~~~~~~~~~~~~~~l~~~G~~------~vf~~~~~~~~i~~~l~~~~~ 135 (137)
T PRK02261 75 REKCIEAGLGDILLYVGGNLVVGKHDFEEVEKKFKEMGFD------RVFPPGTDPEEAIDDLKKDLN 135 (137)
T ss_pred HHHHHhcCCCCCeEEEECCCCCCccChHHHHHHHHHcCCC------EEECcCCCHHHHHHHHHHHhc
Confidence 44456553 35666666666 23445678888865 4565 3456666666766554
No 453
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=69.85 E-value=14 Score=25.45 Aligned_cols=45 Identities=27% Similarity=0.302 Sum_probs=33.6
Q ss_pred cchHHHHHHHHHhCCCCcEEEEcCCCc---ccHHHHHHcCCCEEEEec
Q psy11601 14 QDMMPKVKWLRENYPTLNIEVDGGVGP---NTIDECAKAGANWIVSGT 58 (82)
Q Consensus 14 ~~~~~ki~~~~~~~~~~~i~~dGGI~~---~ni~~~~~~Gad~vv~gs 58 (82)
.+.++-++.+|+.+|+-.|++|.-+-- -..+....+|||.+.+..
T Consensus 41 ~eG~~aV~~lr~~~pd~~IvAD~Kt~D~G~~e~~ma~~aGAd~~tV~g 88 (217)
T COG0269 41 AEGMRAVRALRELFPDKIIVADLKTADAGAIEARMAFEAGADWVTVLG 88 (217)
T ss_pred HhhHHHHHHHHHHCCCCeEEeeeeecchhHHHHHHHHHcCCCEEEEEe
Confidence 356677899999999999999876422 235677899999887653
No 454
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=69.76 E-value=26 Score=23.81 Aligned_cols=42 Identities=21% Similarity=0.303 Sum_probs=29.9
Q ss_pred chHHHHHHHHHhCCCCcEEEEcCCC-------cccHHHHHHcCCCEEEEe
Q psy11601 15 DMMPKVKWLRENYPTLNIEVDGGVG-------PNTIDECAKAGANWIVSG 57 (82)
Q Consensus 15 ~~~~ki~~~~~~~~~~~i~~dGGI~-------~~ni~~~~~~Gad~vv~g 57 (82)
..++-++++++.. ++|+..-+=.+ .+-++.+.++|+|++++-
T Consensus 63 ~~~~~~~~vr~~~-~~pv~lm~y~n~~~~~G~~~fi~~~~~aG~~giiip 111 (242)
T cd04724 63 DVLELVKEIRKKN-TIPIVLMGYYNPILQYGLERFLRDAKEAGVDGLIIP 111 (242)
T ss_pred HHHHHHHHHhhcC-CCCEEEEEecCHHHHhCHHHHHHHHHHCCCcEEEEC
Confidence 4566677777654 57777666556 345788999999999883
No 455
>cd00852 NifB NifB belongs to a family of iron-molybdenum cluster-binding proteins that includes NifX, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme as part of nitrogen fixation in bacteria. This domain is sometimes found fused to a N-terminal domain (the Radical SAM domain) in nifB-like proteins.
Probab=69.70 E-value=20 Score=20.98 Aligned_cols=52 Identities=12% Similarity=0.078 Sum_probs=35.2
Q ss_pred HHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCCCCHHHHHHHH
Q psy11601 18 PKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINCPDRIQAISTL 73 (82)
Q Consensus 18 ~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l 73 (82)
.++....+...++.+++.|+|.+.-...|.+.|+..+.... ..++.+++++|
T Consensus 54 ~~~~~~l~~l~~~~vvi~~~iG~~a~~~L~~~GI~v~~~~~----~~~v~eal~~~ 105 (106)
T cd00852 54 DRLDAIIKLLSDCDAVLCAKIGDEPKEKLEEAGIEVIEAYA----GEYIEEALLEL 105 (106)
T ss_pred hHHHHHHHHHcCCcEEeehhhCccHHHHHHHCCCEEEEecC----cCcHHHHHHHh
Confidence 34443333224799999999999999999999999874432 12455555443
No 456
>PRK02227 hypothetical protein; Provisional
Probab=69.61 E-value=15 Score=25.58 Aligned_cols=50 Identities=18% Similarity=0.242 Sum_probs=39.5
Q ss_pred CCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCCCCH-----HHHHHHHHHHHH
Q psy11601 29 TLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINCPDR-----IQAISTLKSSVQ 78 (82)
Q Consensus 29 ~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~~d~-----~~~~~~l~~~~~ 78 (82)
.......|.++.+.++.+...++|++-.-+++....|- .+.+.++++.+.
T Consensus 180 Gl~~gLAGSL~~~dip~L~~l~pD~lGfRgavC~g~dR~~~id~~~V~~~~~~l~ 234 (238)
T PRK02227 180 GLMSALAGSLKFEDIPALKRLGPDILGVRGAVCGGGDRTGRIDPELVAELREALR 234 (238)
T ss_pred ccHhHhcccCchhhHHHHHhcCCCEEEechhccCCCCcccccCHHHHHHHHHHhh
Confidence 57889999999999999999999999998998854421 245566666554
No 457
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=69.57 E-value=27 Score=24.76 Aligned_cols=46 Identities=15% Similarity=0.224 Sum_probs=36.8
Q ss_pred chHHHHHHHHHhCCCCcEEEEc--CCCcccHHHHHHcCCCEEEEecccc
Q psy11601 15 DMMPKVKWLRENYPTLNIEVDG--GVGPNTIDECAKAGANWIVSGTAVI 61 (82)
Q Consensus 15 ~~~~ki~~~~~~~~~~~i~~dG--GI~~~ni~~~~~~Gad~vv~gs~i~ 61 (82)
-.+++|+++++.. ++|++.=| |+..+.++.+.+.|+.-|=+++.+.
T Consensus 189 Ld~~~L~~I~~~~-~vPLVLHGgSG~~~e~~~~ai~~Gi~KiNi~T~l~ 236 (284)
T PRK09195 189 LDFDRLENIRQWV-NIPLVLHGASGLPTKDIQQTIKLGICKVNVATELK 236 (284)
T ss_pred CCHHHHHHHHHHh-CCCeEEecCCCCCHHHHHHHHHcCCeEEEeCcHHH
Confidence 3466777777765 57888777 5778999999999999999998876
No 458
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=69.45 E-value=38 Score=24.40 Aligned_cols=46 Identities=13% Similarity=-0.016 Sum_probs=32.0
Q ss_pred hHHHHHHHHHhCCCCcEEEE---cCCCcccHHHHHHcCCCEEEEecccc
Q psy11601 16 MMPKVKWLRENYPTLNIEVD---GGVGPNTIDECAKAGANWIVSGTAVI 61 (82)
Q Consensus 16 ~~~ki~~~~~~~~~~~i~~d---GGI~~~ni~~~~~~Gad~vv~gs~i~ 61 (82)
..+.++.+++..++.++.+- |-.+.+.++...++|+|.+-+.....
T Consensus 64 ~~e~i~~~~~~~~~~~~~~ll~pg~~~~~dl~~a~~~gvd~iri~~~~~ 112 (337)
T PRK08195 64 DEEYIEAAAEVVKQAKIAALLLPGIGTVDDLKMAYDAGVRVVRVATHCT 112 (337)
T ss_pred HHHHHHHHHHhCCCCEEEEEeccCcccHHHHHHHHHcCCCEEEEEEecc
Confidence 46677777665555665542 44478889999999999887665433
No 459
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=69.40 E-value=25 Score=24.03 Aligned_cols=44 Identities=14% Similarity=0.038 Sum_probs=31.2
Q ss_pred chHHHHHHHHHhCCCCcEEEE---cCCCcccHHHHHHcCCCEEEEec
Q psy11601 15 DMMPKVKWLRENYPTLNIEVD---GGVGPNTIDECAKAGANWIVSGT 58 (82)
Q Consensus 15 ~~~~ki~~~~~~~~~~~i~~d---GGI~~~ni~~~~~~Gad~vv~gs 58 (82)
...+.++++++..++.++.+- |-.+.+.++...++|++.+-+..
T Consensus 60 ~~~e~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~~g~~~iri~~ 106 (263)
T cd07943 60 TDEEYLEAAAEALKQAKLGVLLLPGIGTVDDLKMAADLGVDVVRVAT 106 (263)
T ss_pred ChHHHHHHHHHhccCCEEEEEecCCccCHHHHHHHHHcCCCEEEEEe
Confidence 456677877766556666554 34467889999999999876643
No 460
>PF06057 VirJ: Bacterial virulence protein (VirJ); InterPro: IPR010333 This entry contains several bacterial VirJ virulence proteins. VirJ is thought to be involved in the type IV secretion system. It is thought that the substrate proteins localised to the periplasm may associate with the pilus in a manner that is mediated by VirJ, and suggest a two-step process for type IV secretion in Agrobacterium [].
Probab=69.26 E-value=10 Score=25.50 Aligned_cols=50 Identities=18% Similarity=0.193 Sum_probs=38.7
Q ss_pred EEEEcCC---CcccHHHHHHcCCCEEEEecc--ccCCCCHHHHHHHHHHHHHHhh
Q psy11601 32 IEVDGGV---GPNTIDECAKAGANWIVSGTA--VINCPDRIQAISTLKSSVQKYL 81 (82)
Q Consensus 32 i~~dGGI---~~~ni~~~~~~Gad~vv~gs~--i~~~~d~~~~~~~l~~~~~~~~ 81 (82)
+.-|||- +.+-...+.+.|+..+.+.|. .++..+|++....+.+.++.+.
T Consensus 8 ~SGDgGw~~~d~~~a~~l~~~G~~VvGvdsl~Yfw~~rtP~~~a~Dl~~~i~~y~ 62 (192)
T PF06057_consen 8 FSGDGGWRDLDKQIAEALAKQGVPVVGVDSLRYFWSERTPEQTAADLARIIRHYR 62 (192)
T ss_pred EeCCCCchhhhHHHHHHHHHCCCeEEEechHHHHhhhCCHHHHHHHHHHHHHHHH
Confidence 4556764 455677899999999988855 5668899999999998887664
No 461
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=69.18 E-value=14 Score=25.80 Aligned_cols=55 Identities=16% Similarity=0.032 Sum_probs=37.4
Q ss_pred CCCCCCCCCCcchHHHHHHHHHhCCCCcEEEEcCCC--cccHHHHHHcCCCEEEEecc
Q psy11601 4 EPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVG--PNTIDECAKAGANWIVSGTA 59 (82)
Q Consensus 4 ~pG~~gq~~~~~~~~ki~~~~~~~~~~~i~~dGGI~--~~ni~~~~~~Gad~vv~gs~ 59 (82)
+|...|=|.....++++.++++..+ -.+.+-.|-. ...+......|+++++.+.+
T Consensus 155 ~~nvvgiKds~~d~~~~~~~~~~~~-~~~~v~~G~~~~d~~~~~~~~~Ga~G~is~~~ 211 (296)
T TIGR03249 155 CPNLVGFKDGIGDMEQMIEITQRLG-DRLGYLGGMPTAEVTAPAYLPLGVTSYSSAIF 211 (296)
T ss_pred CCCEEEEEeCCCCHHHHHHHHHHcC-CCeEEEeCCCcchhhHHHHHhCCCCEEEecHH
Confidence 3555555555556777777655543 2578888863 55667778899999998855
No 462
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=69.01 E-value=39 Score=24.05 Aligned_cols=62 Identities=23% Similarity=0.302 Sum_probs=42.0
Q ss_pred cchHHHHHHHHHhCCCCcEEEEc----CCCccc----HHHHHHcCCCEEEEeccccC-------C---CCHHHHHHHHHH
Q psy11601 14 QDMMPKVKWLRENYPTLNIEVDG----GVGPNT----IDECAKAGANWIVSGTAVIN-------C---PDRIQAISTLKS 75 (82)
Q Consensus 14 ~~~~~ki~~~~~~~~~~~i~~dG----GI~~~n----i~~~~~~Gad~vv~gs~i~~-------~---~d~~~~~~~l~~ 75 (82)
.+.++.++++.+.. ++|+.||+ | ++.| ++++.++||.++.+--..+. . -++.+.+++++.
T Consensus 64 ~e~~~~~~~I~~~~-~iPviaD~d~GyG-~~~~v~r~V~~~~~aGaagi~IEDq~~pK~cg~~~~~~lv~~ee~~~kI~A 141 (292)
T PRK11320 64 DDVLIDVRRITDAC-DLPLLVDIDTGFG-GAFNIARTVKSMIKAGAAAVHIEDQVGAKRCGHRPNKEIVSQEEMVDRIKA 141 (292)
T ss_pred HHHHHHHHHHHhcc-CCCEEEECCCCCC-CHHHHHHHHHHHHHcCCeEEEEecCCCccccCCCCCCcccCHHHHHHHHHH
Confidence 45677777777765 58999985 5 6666 68999999999998654431 1 144555666665
Q ss_pred HH
Q psy11601 76 SV 77 (82)
Q Consensus 76 ~~ 77 (82)
..
T Consensus 142 a~ 143 (292)
T PRK11320 142 AV 143 (292)
T ss_pred HH
Confidence 43
No 463
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=68.82 E-value=26 Score=22.00 Aligned_cols=37 Identities=14% Similarity=0.157 Sum_probs=23.2
Q ss_pred ccHHHHHHcCCCEEEEeccccCCCC--HHHHHHHHHHHH
Q psy11601 41 NTIDECAKAGANWIVSGTAVINCPD--RIQAISTLKSSV 77 (82)
Q Consensus 41 ~ni~~~~~~Gad~vv~gs~i~~~~d--~~~~~~~l~~~~ 77 (82)
+.++.+.++|||.+.+....+...+ .....+.+++..
T Consensus 69 ~~a~~a~~~Gad~i~v~~~~~~~~~~~~~~~~~~~~~i~ 107 (201)
T cd00945 69 AEVEEAIDLGADEIDVVINIGSLKEGDWEEVLEEIAAVV 107 (201)
T ss_pred HHHHHHHHcCCCEEEEeccHHHHhCCCHHHHHHHHHHHH
Confidence 5677889999999998765543222 444444444433
No 464
>TIGR03682 arCOG04112 arCOG04112 universal archaeal diphthamide biosynthesis domain protein. This family of proteins has been observed universally in archaeal genomes and contains a match to the TIGR00322 model for the diphthamide biosynthesis protein 2-related domain.
Probab=68.78 E-value=8 Score=27.58 Aligned_cols=51 Identities=10% Similarity=0.055 Sum_probs=38.4
Q ss_pred CCCCCCCCcchHHHHHHH-HHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEecc
Q psy11601 6 GFGGQKFMQDMMPKVKWL-RENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTA 59 (82)
Q Consensus 6 G~~gq~~~~~~~~ki~~~-~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~ 59 (82)
|.-|-+-.+..+++++++ ++...+.-+.+.|-+|++.+..+ ++|.+|..+.
T Consensus 220 gTl~~q~~~~~~~~l~~ll~~~gkk~y~i~~~~in~~kL~nf---~iD~fV~~aC 271 (308)
T TIGR03682 220 STKKGQRRPELAEELKKLLEELGKEALLILLDNISPDQLRNL---DFDAYVNTAC 271 (308)
T ss_pred EccCcCCCHHHHHHHHHHHHHcCCeEEEEEeCCCCHHHHhcC---CcCEEEEccC
Confidence 444445566788888874 45555677899999999999777 5999998865
No 465
>COG1938 Archaeal enzymes of ATP-grasp superfamily [General function prediction only]
Probab=68.59 E-value=32 Score=24.04 Aligned_cols=62 Identities=21% Similarity=0.240 Sum_probs=45.3
Q ss_pred HHHHHHHHh-CCCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccC-CCCHHHHHHHHHHHHHHh
Q psy11601 18 PKVKWLREN-YPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVIN-CPDRIQAISTLKSSVQKY 80 (82)
Q Consensus 18 ~ki~~~~~~-~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~-~~d~~~~~~~l~~~~~~~ 80 (82)
+++.++++. ...++--.++|+...-+.++...|.+.+++-..-+. -+||.++..-+. .++++
T Consensus 136 ~~~~~l~~~~~~~~~~G~I~G~~g~ll~e~~~r~i~a~~ll~et~~~~PDP~AAa~vve-~lnk~ 199 (244)
T COG1938 136 EKLEKLKDLGAEPLEEGTIVGPSGALLNECLKRGIPALVLLAETFGDRPDPRAAARVVE-ALNKM 199 (244)
T ss_pred hhhhHHhhcCCCccccceeecccHHHHHHHHHcCCCeEEEeccccCCCCChHHHHHHHH-HHHHH
Confidence 345556655 344667789999999999999999999999977665 578886655443 55443
No 466
>cd08211 RuBisCO_large_II Ribulose bisphosphate carboxylase large chain, Form II. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV , which differ in their taxonomic distribution and subunit composition. Form II is mainly found in bacteria, and forms large subunit oligomers (dimers, tetramers, etc.) that do not include small subunits.
Probab=68.56 E-value=17 Score=27.42 Aligned_cols=51 Identities=12% Similarity=0.231 Sum_probs=40.4
Q ss_pred CcEEEEcCCCcccHHHH-HHcC-CCEEEEe-ccccC-CCCHHHHHHHHHHHHHHh
Q psy11601 30 LNIEVDGGVGPNTIDEC-AKAG-ANWIVSG-TAVIN-CPDRIQAISTLKSSVQKY 80 (82)
Q Consensus 30 ~~i~~dGGI~~~ni~~~-~~~G-ad~vv~g-s~i~~-~~d~~~~~~~l~~~~~~~ 80 (82)
+-=+..||+++..++++ ...| .|.+... ..|++ ++.+++-++.+++.++..
T Consensus 362 ~~Pv~sGG~~~~~vp~~~~~~G~~Dvil~~GGGi~gHP~G~~aGa~A~rqA~ea~ 416 (439)
T cd08211 362 TTPIISGGMNALRLPGFFENLGNGNVILTAGGGSFGHIDGPAAGAKSLRQAYDAW 416 (439)
T ss_pred ceEecCCCCCHhHHHHHHHHhCCCCEEEEcCccccCCCCChHHHHHHHHHHHHHH
Confidence 44578999999999987 5678 5776654 88998 567999999999887753
No 467
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=68.42 E-value=42 Score=24.25 Aligned_cols=47 Identities=6% Similarity=-0.009 Sum_probs=36.6
Q ss_pred CCcchHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEec
Q psy11601 12 FMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGT 58 (82)
Q Consensus 12 ~~~~~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs 58 (82)
..+..++.++++++..++..+.+-+-.+.+.++...++|++.+-+..
T Consensus 47 ~~~~~~e~i~~i~~~~~~~~i~~~~r~~~~di~~a~~~g~~~i~i~~ 93 (365)
T TIGR02660 47 MGEEERAVIRAIVALGLPARLMAWCRARDADIEAAARCGVDAVHISI 93 (365)
T ss_pred CCHHHHHHHHHHHHcCCCcEEEEEcCCCHHHHHHHHcCCcCEEEEEE
Confidence 34566788888887766677888787889999999999999766553
No 468
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=68.35 E-value=32 Score=24.35 Aligned_cols=46 Identities=17% Similarity=0.227 Sum_probs=36.4
Q ss_pred chHHHHHHHHHhCCCCcEEEEc--CCCcccHHHHHHcCCCEEEEecccc
Q psy11601 15 DMMPKVKWLRENYPTLNIEVDG--GVGPNTIDECAKAGANWIVSGTAVI 61 (82)
Q Consensus 15 ~~~~ki~~~~~~~~~~~i~~dG--GI~~~ni~~~~~~Gad~vv~gs~i~ 61 (82)
-.++.|+++++.. ++|++.=| |+..+.++.+.+.|+.-|=+++.+.
T Consensus 189 Ld~~~L~~i~~~~-~vPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~T~~~ 236 (284)
T PRK12857 189 LDFDRLAKIKELV-NIPIVLHGSSGVPDEAIRKAISLGVRKVNIDTNIR 236 (284)
T ss_pred CCHHHHHHHHHHh-CCCEEEeCCCCCCHHHHHHHHHcCCeEEEeCcHHH
Confidence 3566677777665 57877777 5778999999999999999888875
No 469
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=67.89 E-value=32 Score=24.38 Aligned_cols=46 Identities=15% Similarity=0.240 Sum_probs=37.2
Q ss_pred chHHHHHHHHHhCCCCcEEEEc--CCCcccHHHHHHcCCCEEEEecccc
Q psy11601 15 DMMPKVKWLRENYPTLNIEVDG--GVGPNTIDECAKAGANWIVSGTAVI 61 (82)
Q Consensus 15 ~~~~ki~~~~~~~~~~~i~~dG--GI~~~ni~~~~~~Gad~vv~gs~i~ 61 (82)
-.++.|+++++.. ++|++.=| |+..+.++...+.|+.-|=+++.+.
T Consensus 189 Ld~~~L~~I~~~~-~iPLVlHGgSG~~~e~~~kai~~Gi~KiNi~T~l~ 236 (284)
T PRK12737 189 LDFERLAEIREKV-SIPLVLHGASGVPDEDVKKAISLGICKVNVATELK 236 (284)
T ss_pred CCHHHHHHHHHHh-CCCEEEeCCCCCCHHHHHHHHHCCCeEEEeCcHHH
Confidence 3567788887765 57888877 5778999999999999999998875
No 470
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=67.78 E-value=31 Score=24.46 Aligned_cols=46 Identities=15% Similarity=0.205 Sum_probs=36.5
Q ss_pred chHHHHHHHHHhCCCCcEEEEcC--CCcccHHHHHHcCCCEEEEecccc
Q psy11601 15 DMMPKVKWLRENYPTLNIEVDGG--VGPNTIDECAKAGANWIVSGTAVI 61 (82)
Q Consensus 15 ~~~~ki~~~~~~~~~~~i~~dGG--I~~~ni~~~~~~Gad~vv~gs~i~ 61 (82)
-.+++|+++++.. ++|++.=|| +..+.++.+.+.|+.-|=+++.+.
T Consensus 190 L~~~~L~~I~~~~-~iPLVLHGgSG~~~e~~~~ai~~Gi~KiNi~T~l~ 237 (285)
T PRK07709 190 LGFAEMEQVRDFT-GVPLVLHGGTGIPTADIEKAISLGTSKINVNTENQ 237 (285)
T ss_pred cCHHHHHHHHHHH-CCCEEEeCCCCCCHHHHHHHHHcCCeEEEeChHHH
Confidence 3456777777765 588888774 677899999999999998888874
No 471
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=67.49 E-value=31 Score=24.49 Aligned_cols=45 Identities=16% Similarity=0.164 Sum_probs=36.9
Q ss_pred hHHHHHHHHHhCCCCcEEEEcC--CCcccHHHHHHcCCCEEEEecccc
Q psy11601 16 MMPKVKWLRENYPTLNIEVDGG--VGPNTIDECAKAGANWIVSGTAVI 61 (82)
Q Consensus 16 ~~~ki~~~~~~~~~~~i~~dGG--I~~~ni~~~~~~Gad~vv~gs~i~ 61 (82)
.+++|+++++.. ++|++.=|| +..+.++.+.+.|+.-|=+++.+.
T Consensus 191 d~~~L~~I~~~~-~vPLVLHGgSG~~~e~~~~ai~~GI~KiNi~T~l~ 237 (286)
T PRK08610 191 GFKEMEEIGLST-GLPLVLHGGTGIPTKDIQKAIPFGTAKINVNTENQ 237 (286)
T ss_pred CHHHHHHHHHHH-CCCEEEeCCCCCCHHHHHHHHHCCCeEEEeccHHH
Confidence 477788887765 688888885 667899999999999998888874
No 472
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=67.46 E-value=19 Score=25.38 Aligned_cols=41 Identities=22% Similarity=0.377 Sum_probs=30.7
Q ss_pred chHHHHHHHHHhCCC-CcEEEEcCCCcccHHHHHHcCCCEEEE
Q psy11601 15 DMMPKVKWLRENYPT-LNIEVDGGVGPNTIDECAKAGANWIVS 56 (82)
Q Consensus 15 ~~~~ki~~~~~~~~~-~~i~~dGGI~~~ni~~~~~~Gad~vv~ 56 (82)
...+.++++++..|+ .+|+|.=. +.+.+.+.+++|+|++-+
T Consensus 167 ~i~~~v~~~k~~~p~~~~I~VEv~-tleea~~A~~~GaDiI~L 208 (273)
T PRK05848 167 DLKEFIQHARKNIPFTAKIEIECE-SLEEAKNAMNAGADIVMC 208 (273)
T ss_pred cHHHHHHHHHHhCCCCceEEEEeC-CHHHHHHHHHcCCCEEEE
Confidence 344557778877663 56776666 999999999999997764
No 473
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=67.31 E-value=9.6 Score=26.35 Aligned_cols=56 Identities=21% Similarity=0.168 Sum_probs=37.3
Q ss_pred CCCCCCCCCCcchHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEecccc
Q psy11601 4 EPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVI 61 (82)
Q Consensus 4 ~pG~~gq~~~~~~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~ 61 (82)
.|...|-+.....+.++.++.+..+ -.+.+-.| ..+.+......|+++++++.+-+
T Consensus 154 ~~nv~giK~s~~~~~~~~~~~~~~~-~~~~v~~G-~d~~~~~~l~~G~~G~is~~~n~ 209 (289)
T PF00701_consen 154 IPNVVGIKDSSGDLERLIQLLRAVG-PDFSVFCG-DDELLLPALAAGADGFISGLANV 209 (289)
T ss_dssp STTEEEEEESSSBHHHHHHHHHHSS-TTSEEEES-SGGGHHHHHHTTSSEEEESGGGT
T ss_pred CCcEEEEEcCchhHHHHHHHhhhcc-cCeeeecc-ccccccccccccCCEEEEccccc
Confidence 3455555655556677777655432 23455556 66678888899999999997643
No 474
>TIGR02618 tyr_phenol_ly tyrosine phenol-lyase. This model describes a group of tyrosine phenol-lyase (4.1.99.2) (beta-tyrosinase), a pyridoxal-phosphate enzyme closely related to tryptophanase (4.1.99.1) (see model TIGR02617). Both belong to the beta-eliminating lyase family (pfam01212)
Probab=67.27 E-value=26 Score=26.55 Aligned_cols=35 Identities=23% Similarity=0.172 Sum_probs=29.5
Q ss_pred CCCCCCCcchHHHHHHHHHhCCCCcEEEEcCCCccc
Q psy11601 7 FGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNT 42 (82)
Q Consensus 7 ~~gq~~~~~~~~ki~~~~~~~~~~~i~~dGGI~~~n 42 (82)
++||++....+++++++.+.+ ++++..||-=-.+|
T Consensus 183 ~GG~pvs~~~l~~I~elA~~~-Gl~vi~DaAR~~gN 217 (450)
T TIGR02618 183 AGGQPVSMANMREVRELCEAH-GIKVFYDATRCVEN 217 (450)
T ss_pred CCCeeCCHHHHHHHHHHHHHc-CCEEEEEccchhhC
Confidence 468999999999999988875 79999999876666
No 475
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=67.14 E-value=8.9 Score=26.85 Aligned_cols=53 Identities=15% Similarity=0.191 Sum_probs=36.1
Q ss_pred CCCCCCCCcchHHHHHHHHH---hCCCCcEEEEcCCCcccHHHHHHcCCCEEEEeccc
Q psy11601 6 GFGGQKFMQDMMPKVKWLRE---NYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAV 60 (82)
Q Consensus 6 G~~gq~~~~~~~~ki~~~~~---~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i 60 (82)
|..+|.-.|+..+.++++.+ .. ..++- .-.-+.+.++.+.+.|++.++.++..
T Consensus 185 g~~~~~~~pev~~ai~~v~~a~~~~-Gk~~G-~~~~~~~~a~~~~~~G~~~v~~g~D~ 240 (267)
T PRK10128 185 GYPDNAGHPEVQRIIETSIRRIRAA-GKAAG-FLAVDPDMAQKCLAWGANFVAVGVDT 240 (267)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHc-CCeEE-EcCCCHHHHHHHHHcCCcEEEEChHH
Confidence 55667667766666666433 22 34433 23357889999999999999999764
No 476
>PRK04311 selenocysteine synthase; Provisional
Probab=67.04 E-value=18 Score=27.22 Aligned_cols=43 Identities=19% Similarity=0.214 Sum_probs=31.5
Q ss_pred cchHHHHHHHHHhCCCCcEEEEcCC------------CcccHHHHHHcCCCEEEEe
Q psy11601 14 QDMMPKVKWLRENYPTLNIEVDGGV------------GPNTIDECAKAGANWIVSG 57 (82)
Q Consensus 14 ~~~~~ki~~~~~~~~~~~i~~dGGI------------~~~ni~~~~~~Gad~vv~g 57 (82)
+..+++|.++.+.+ ++++.+|.|. ..-++....+.|+|.++..
T Consensus 236 ~~dl~eI~~lak~~-gi~vivD~gsG~l~~~~~~gl~~~p~~~~~l~~GaDiv~fS 290 (464)
T PRK04311 236 EVSLAELAALGKEH-GLPVVYDLGSGSLVDLSQYGLPDEPTVQELLAAGVDLVTFS 290 (464)
T ss_pred cCCHHHHHHHHHHc-CCeEEEECCCcccccchhccCCCCCchhhHHhcCCcEEEec
Confidence 34688888877764 6999999963 1235667788999988655
No 477
>PRK06256 biotin synthase; Validated
Probab=66.56 E-value=12 Score=26.42 Aligned_cols=41 Identities=20% Similarity=0.246 Sum_probs=28.8
Q ss_pred hHHHHHHHHHhCCCCcEEEEcC-CCcccHHHHHHcCCCEEEEe
Q psy11601 16 MMPKVKWLRENYPTLNIEVDGG-VGPNTIDECAKAGANWIVSG 57 (82)
Q Consensus 16 ~~~ki~~~~~~~~~~~i~~dGG-I~~~ni~~~~~~Gad~vv~g 57 (82)
.++-++.+++. +++.+.+..| ++.+.+..+.++|++.+..+
T Consensus 128 ~~e~i~~i~~~-~~i~~~~~~g~l~~e~l~~LkeaG~~~v~~~ 169 (336)
T PRK06256 128 VVEAVKAIKEE-TDLEICACLGLLTEEQAERLKEAGVDRYNHN 169 (336)
T ss_pred HHHHHHHHHhc-CCCcEEecCCcCCHHHHHHHHHhCCCEEecC
Confidence 34445555554 4566666655 78899999999999988764
No 478
>COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism]
Probab=66.44 E-value=13 Score=27.21 Aligned_cols=67 Identities=13% Similarity=0.175 Sum_probs=47.2
Q ss_pred CCCCCCcchHHHHHHHHHhCCCCcEEEEcCCCccc--------HHHHHHcCCCEEEEe----------ccccCCCCHHHH
Q psy11601 8 GGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNT--------IDECAKAGANWIVSG----------TAVINCPDRIQA 69 (82)
Q Consensus 8 ~gq~~~~~~~~ki~~~~~~~~~~~i~~dGGI~~~n--------i~~~~~~Gad~vv~g----------s~i~~~~d~~~~ 69 (82)
.|+-+..+-++.|.++++.+ ++|+..||- +.-| +.++ ..++|.|.+| +-+|...|..+.
T Consensus 143 ~GtVy~l~el~~i~~~~k~~-~l~LHmDGA-R~~nA~valg~~~~~~-~~~~D~v~~~~tK~g~~~~gAiv~gn~~~~~~ 219 (342)
T COG2008 143 GGTVYPLDELEAISAVCKEH-GLPLHMDGA-RLANALVALGVALKTI-KSYVDSVSFCLTKGGGAPVGAIVFGNRDFAKR 219 (342)
T ss_pred CceecCHHHHHHHHHHHHHh-CCceeechH-HHHHHHHHcCCCHHHH-HhhCCEEEEecccCCcceeeeEEEcCHHHHHH
Confidence 47777788888888887775 799999984 2222 2233 5578888754 446677788888
Q ss_pred HHHHHHHH
Q psy11601 70 ISTLKSSV 77 (82)
Q Consensus 70 ~~~l~~~~ 77 (82)
+..+++..
T Consensus 220 a~~~rK~~ 227 (342)
T COG2008 220 ARRWRKRA 227 (342)
T ss_pred HHHHHHHh
Confidence 88888754
No 479
>PRK00955 hypothetical protein; Provisional
Probab=66.41 E-value=16 Score=28.78 Aligned_cols=49 Identities=20% Similarity=0.342 Sum_probs=33.5
Q ss_pred CCCCCcchHHHHHHHHHhCCCCcEEEEcCCCcccH--------------HHHHHcCCCEEEEec
Q psy11601 9 GQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTI--------------DECAKAGANWIVSGT 58 (82)
Q Consensus 9 gq~~~~~~~~ki~~~~~~~~~~~i~~dGGI~~~ni--------------~~~~~~Gad~vv~gs 58 (82)
|.+=...++.-.+.+++.+|++| .+.||+-...- ..|..++||.+|.|-
T Consensus 103 ~~rpdra~i~y~~~ik~~~p~~~-IvlGG~eaS~rr~~hyd~w~~~~~~siL~d~~aD~vv~Ge 165 (620)
T PRK00955 103 GLRPDRATIVYCNKIKEAYPDVP-IIIGGIEASLRRFAHYDYWSDKVRRSILIDSGADLLVYGM 165 (620)
T ss_pred CCCcchHHHHHHHHHHHHCCCCc-EEeCChhhhccccccchhhhhhhhHHHhhccCCCEEEECC
Confidence 33334455555677888888774 78899976651 136678999999883
No 480
>COG1504 Uncharacterized conserved protein [Function unknown]
Probab=66.34 E-value=5.6 Score=24.78 Aligned_cols=25 Identities=24% Similarity=0.357 Sum_probs=22.8
Q ss_pred CCcccHHHHHHcCCCEEEEeccccC
Q psy11601 38 VGPNTIDECAKAGANWIVSGTAVIN 62 (82)
Q Consensus 38 I~~~ni~~~~~~Gad~vv~gs~i~~ 62 (82)
+.++.+.+++..+++.+++|+...+
T Consensus 49 l~~eEle~~lee~~E~ivvGTG~~G 73 (121)
T COG1504 49 LALEELEELLEEGPEVIVVGTGQSG 73 (121)
T ss_pred cCHHHHHHHHhcCCcEEEEecCcee
Confidence 5889999999999999999998876
No 481
>CHL00040 rbcL ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit
Probab=66.24 E-value=15 Score=27.95 Aligned_cols=50 Identities=6% Similarity=0.014 Sum_probs=39.5
Q ss_pred CcEEEEcCCCcccHHHHH-HcCCCEEEEe-ccccC-CCCHHHHHHHHHHHHHH
Q psy11601 30 LNIEVDGGVGPNTIDECA-KAGANWIVSG-TAVIN-CPDRIQAISTLKSSVQK 79 (82)
Q Consensus 30 ~~i~~dGGI~~~ni~~~~-~~Gad~vv~g-s~i~~-~~d~~~~~~~l~~~~~~ 79 (82)
+-=+..||+++..++++. ..|.|.+... ..|++ ++.+++-++.+++.++.
T Consensus 374 ~~Pv~SGG~~~g~vp~~~~~~G~Dvil~aGGGi~gHPdG~~aGa~A~RqA~ea 426 (475)
T CHL00040 374 VLPVASGGIHVWHMPALTEIFGDDSVLQFGGGTLGHPWGNAPGAVANRVALEA 426 (475)
T ss_pred ceEecCCCCCHHHHHHHHHHhCCCeeEecCcceecCCCChhHHHHHHHHHHHH
Confidence 445789999999999655 5788876654 77998 56799999999988764
No 482
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=66.20 E-value=20 Score=27.88 Aligned_cols=58 Identities=17% Similarity=0.225 Sum_probs=39.4
Q ss_pred CcchHHHHHHHHHhCCCCcEEEE--c-----------CCCcccHHHHHHcCCCEEEEeccccCCCCHHHHH
Q psy11601 13 MQDMMPKVKWLRENYPTLNIEVD--G-----------GVGPNTIDECAKAGANWIVSGTAVINCPDRIQAI 70 (82)
Q Consensus 13 ~~~~~~ki~~~~~~~~~~~i~~d--G-----------GI~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~ 70 (82)
.++.+++++++++..++.++.+- | -+-...++...++|+|.|-+..++-..++....+
T Consensus 59 ~edp~e~l~~l~~~~~~~~l~~l~Rg~N~~gy~~ypd~vv~~~v~~A~~~Gvd~irif~~lnd~~n~~~~i 129 (592)
T PRK09282 59 NEDPWERLRKLKKALPNTPLQMLLRGQNLVGYRHYPDDVVEKFVEKAAENGIDIFRIFDALNDVRNMEVAI 129 (592)
T ss_pred CccHHHHHHHHHHhCCCCEEEEEeccccccccccccchhhHHHHHHHHHCCCCEEEEEEecChHHHHHHHH
Confidence 57889999999998777777765 4 1233457788899999876665554333333333
No 483
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=66.18 E-value=26 Score=23.12 Aligned_cols=63 Identities=16% Similarity=0.194 Sum_probs=37.9
Q ss_pred cchHHHHHHHHHhCCCCc---EEEEcCCCcccH----HHHHHcCCCEEEEeccccCCCCHHHHHHHHHHH
Q psy11601 14 QDMMPKVKWLRENYPTLN---IEVDGGVGPNTI----DECAKAGANWIVSGTAVINCPDRIQAISTLKSS 76 (82)
Q Consensus 14 ~~~~~ki~~~~~~~~~~~---i~~dGGI~~~ni----~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~ 76 (82)
...++.|.++++...+.| |.-.|-.+.+++ +...++|||++=..+......--.+.++.|++.
T Consensus 101 ~~~~~ei~~v~~~~~g~~lkvI~e~~~l~~~~i~~a~ria~e~GaD~IKTsTG~~~~~at~~~v~~~~~~ 170 (203)
T cd00959 101 EAVYEEIAAVVEACGGAPLKVILETGLLTDEEIIKACEIAIEAGADFIKTSTGFGPGGATVEDVKLMKEA 170 (203)
T ss_pred HHHHHHHHHHHHhcCCCeEEEEEecCCCCHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHHHHHH
Confidence 456777777776543445 455666776664 456789999998887765322222344444443
No 484
>cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases. FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase.
Probab=66.16 E-value=37 Score=22.77 Aligned_cols=65 Identities=18% Similarity=0.235 Sum_probs=46.4
Q ss_pred CcchHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEecc-ccC-CCCHHHHHHHHHHHHHH
Q psy11601 13 MQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTA-VIN-CPDRIQAISTLKSSVQK 79 (82)
Q Consensus 13 ~~~~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~-i~~-~~d~~~~~~~l~~~~~~ 79 (82)
..+.++-++++++. .+++-+..=-+.+......++||+.+.---. +-. ..|..+.++++.+.+++
T Consensus 87 T~~gl~ai~~L~~~--gi~v~~T~V~s~~Qa~~Aa~AGA~yvsP~vgR~~~~g~dg~~~i~~i~~~~~~ 153 (211)
T cd00956 87 TEDGLKAIKKLSEE--GIKTNVTAIFSAAQALLAAKAGATYVSPFVGRIDDLGGDGMELIREIRTIFDN 153 (211)
T ss_pred cHhHHHHHHHHHHc--CCceeeEEecCHHHHHHHHHcCCCEEEEecChHhhcCCCHHHHHHHHHHHHHH
Confidence 44667778887776 4788888888999999999999997433211 111 35777888888877765
No 485
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=66.02 E-value=35 Score=24.08 Aligned_cols=46 Identities=15% Similarity=0.200 Sum_probs=35.8
Q ss_pred CcchHHHHHHHHHhCCCCcEEEEcCCCc-------ccHHHHHHcCCCEEEEec
Q psy11601 13 MQDMMPKVKWLRENYPTLNIEVDGGVGP-------NTIDECAKAGANWIVSGT 58 (82)
Q Consensus 13 ~~~~~~ki~~~~~~~~~~~i~~dGGI~~-------~ni~~~~~~Gad~vv~gs 58 (82)
.+..++-++++++....+|+..-+=-|+ +-++.+.++|+|++++--
T Consensus 78 ~~~~lel~~~~r~~~~~~Pivlm~Y~Npi~~~Gie~F~~~~~~~GvdGlivpD 130 (265)
T COG0159 78 LEDTLELVEEIRAKGVKVPIVLMTYYNPIFNYGIEKFLRRAKEAGVDGLLVPD 130 (265)
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEEeccHHHHhhHHHHHHHHHHcCCCEEEeCC
Confidence 3567888888887767788888876665 347789999999998753
No 486
>PRK12376 putative translaldolase; Provisional
Probab=65.81 E-value=32 Score=23.75 Aligned_cols=62 Identities=10% Similarity=0.094 Sum_probs=42.4
Q ss_pred HHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccC---------CCCHHHHHHHHHHHHHH
Q psy11601 18 PKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVIN---------CPDRIQAISTLKSSVQK 79 (82)
Q Consensus 18 ~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~---------~~d~~~~~~~l~~~~~~ 79 (82)
+.+.++-+..++..|.+.-==+.+++.++..+|||.+-+.-.+|. .+-..+.++.|.+-+++
T Consensus 160 ~~i~~i~~~~~~tkILaASiR~~~~v~~a~~~Gad~vTvp~~v~~~l~~~~~~~~~~t~~~v~~F~~Dw~~ 230 (236)
T PRK12376 160 KEALAICHSKPGVELLWASPREVYNIIQADQLGCDIITVTPDVLKKLPLLGKDLEELSLETVKGFAKDAQA 230 (236)
T ss_pred HHHHHHHHhCCCcEEEEEecCCHHHHHHHHHcCCCEEEcCHHHHHHHHhcCCCCCchhHHHHHHHHHHHHH
Confidence 333333333456788888777889999999999999998877654 12345667777766543
No 487
>PRK09198 putative nicotinate phosphoribosyltransferase; Provisional
Probab=65.65 E-value=8.8 Score=29.12 Aligned_cols=36 Identities=17% Similarity=0.318 Sum_probs=29.0
Q ss_pred CCCcEEEEcCCCcccHHH----HHHcCC--C--EEEEeccccCC
Q psy11601 28 PTLNIEVDGGVGPNTIDE----CAKAGA--N--WIVSGTAVINC 63 (82)
Q Consensus 28 ~~~~i~~dGGI~~~ni~~----~~~~Ga--d--~vv~gs~i~~~ 63 (82)
+++.|.+.|||+.+.+.+ +.+.|+ | .|-+|+.+..+
T Consensus 328 ~~v~Ii~s~glde~~i~~il~~l~~~G~~~dni~FGvGt~l~~~ 371 (463)
T PRK09198 328 PHVGVIQGDGITLDSIEAILEALKAKGFAAENIVFGMGGALLQY 371 (463)
T ss_pred CCeEEEEeCCCCHHHHHHHHHHHHhCCCccccceEecCcccccC
Confidence 479999999999999999 444443 4 88889998874
No 488
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=65.37 E-value=35 Score=24.20 Aligned_cols=45 Identities=13% Similarity=0.231 Sum_probs=37.1
Q ss_pred hHHHHHHHHHhCCCCcEEEEcC--CCcccHHHHHHcCCCEEEEecccc
Q psy11601 16 MMPKVKWLRENYPTLNIEVDGG--VGPNTIDECAKAGANWIVSGTAVI 61 (82)
Q Consensus 16 ~~~ki~~~~~~~~~~~i~~dGG--I~~~ni~~~~~~Gad~vv~gs~i~ 61 (82)
.++.|+++++.. ++|++.=|| +..+.++.+.+.|+.-|=+++.+.
T Consensus 194 d~~~L~~I~~~v-~vPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~T~l~ 240 (288)
T TIGR00167 194 DFERLEEIQKYV-NLPLVLHGGSGIPDEEIKKAISLGVVKVNIDTELQ 240 (288)
T ss_pred CHHHHHHHHHHh-CCCEEEeCCCCCCHHHHHHHHHcCCeEEEcChHHH
Confidence 677888888875 588888885 566799999999999998888874
No 489
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=65.28 E-value=46 Score=23.50 Aligned_cols=75 Identities=15% Similarity=0.105 Sum_probs=45.5
Q ss_pred CCCCCCCCCCcchHHHHH---HHHHh-CCCCcEEE-EcCCCccc----HHHHHHcCCCEEEEeccccCCCCHHHHHHHHH
Q psy11601 4 EPGFGGQKFMQDMMPKVK---WLREN-YPTLNIEV-DGGVGPNT----IDECAKAGANWIVSGTAVINCPDRIQAISTLK 74 (82)
Q Consensus 4 ~pG~~gq~~~~~~~~ki~---~~~~~-~~~~~i~~-dGGI~~~n----i~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~ 74 (82)
-.|+.|.-..-..-|+.+ ..++. ...+|+.+ .|+.+.+. .+...+.|+|.+.+....|..++..+..+.++
T Consensus 44 ~~GttGE~~~Ls~eEr~~v~~~~v~~~~grvpviaG~g~~~t~eai~lak~a~~~Gad~il~v~PyY~k~~~~gl~~hf~ 123 (299)
T COG0329 44 VLGTTGESPTLTLEERKEVLEAVVEAVGGRVPVIAGVGSNSTAEAIELAKHAEKLGADGILVVPPYYNKPSQEGLYAHFK 123 (299)
T ss_pred ECCCCccchhcCHHHHHHHHHHHHHHHCCCCcEEEecCCCcHHHHHHHHHHHHhcCCCEEEEeCCCCcCCChHHHHHHHH
Confidence 356677555433333322 23333 23466444 66665544 34566789999999999888777666666666
Q ss_pred HHHH
Q psy11601 75 SSVQ 78 (82)
Q Consensus 75 ~~~~ 78 (82)
...+
T Consensus 124 ~ia~ 127 (299)
T COG0329 124 AIAE 127 (299)
T ss_pred HHHH
Confidence 5544
No 490
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=64.83 E-value=50 Score=23.77 Aligned_cols=47 Identities=11% Similarity=0.060 Sum_probs=31.9
Q ss_pred hHHHHHHHHHhCCCCcEE--EEcC-CCcccHHHHHHcCCCEEEEeccccC
Q psy11601 16 MMPKVKWLRENYPTLNIE--VDGG-VGPNTIDECAKAGANWIVSGTAVIN 62 (82)
Q Consensus 16 ~~~ki~~~~~~~~~~~i~--~dGG-I~~~ni~~~~~~Gad~vv~gs~i~~ 62 (82)
..+.++++++..++..+. ..-| .+.+.++...++|++.+-+......
T Consensus 63 ~~e~i~~~~~~~~~~~~~~ll~pg~~~~~dl~~a~~~gvd~iri~~~~~e 112 (333)
T TIGR03217 63 DLEYIEAAADVVKRAKVAVLLLPGIGTVHDLKAAYDAGARTVRVATHCTE 112 (333)
T ss_pred hHHHHHHHHHhCCCCEEEEEeccCccCHHHHHHHHHCCCCEEEEEeccch
Confidence 567777777655555544 2333 3788899999999999877654443
No 491
>PRK08114 cystathionine beta-lyase; Provisional
Probab=64.73 E-value=18 Score=26.69 Aligned_cols=43 Identities=12% Similarity=0.142 Sum_probs=32.0
Q ss_pred chHHHHHHHHHhC-CCCcEEEEcCCCcccHHHHHHcCCCEEEEe
Q psy11601 15 DMMPKVKWLRENY-PTLNIEVDGGVGPNTIDECAKAGANWIVSG 57 (82)
Q Consensus 15 ~~~~ki~~~~~~~-~~~~i~~dGGI~~~ni~~~~~~Gad~vv~g 57 (82)
..+++|.++.+.. +++.++||+=-..-.+....+.|||+++-.
T Consensus 164 ~DI~~Ia~ia~~~g~g~~lvVDnT~a~p~~~~pl~~GaDivv~S 207 (395)
T PRK08114 164 HDVPAIVAAVRSVNPDAVIMIDNTWAAGVLFKALDFGIDISIQA 207 (395)
T ss_pred ecHHHHHHHHHHhCCCCEEEEECCCccccccCHHHcCCcEEEEc
Confidence 4577788766554 468999999875555577788999988854
No 492
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=64.63 E-value=18 Score=25.27 Aligned_cols=28 Identities=18% Similarity=0.049 Sum_probs=20.3
Q ss_pred cEEEEcCCCcccHHHHHHcCCCEEEEecc
Q psy11601 31 NIEVDGGVGPNTIDECAKAGANWIVSGTA 59 (82)
Q Consensus 31 ~i~~dGGI~~~ni~~~~~~Gad~vv~gs~ 59 (82)
.+.+-.|-. +.+.....+|+++++++.+
T Consensus 181 ~~~v~~G~d-~~~~~~l~~Ga~G~is~~~ 208 (294)
T TIGR02313 181 DFLLFCGIE-LLCLPMLAIGAAGSIAATA 208 (294)
T ss_pred CeEEEEcch-HHHHHHHHCCCCEEEecHH
Confidence 566777755 5555566899999999854
No 493
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=64.42 E-value=22 Score=24.69 Aligned_cols=46 Identities=17% Similarity=0.151 Sum_probs=32.2
Q ss_pred CcchHHHHHHHHHhCCCCcEEEEcC-------------CCcccHHHHHHcCCCEEEEec
Q psy11601 13 MQDMMPKVKWLRENYPTLNIEVDGG-------------VGPNTIDECAKAGANWIVSGT 58 (82)
Q Consensus 13 ~~~~~~ki~~~~~~~~~~~i~~dGG-------------I~~~ni~~~~~~Gad~vv~gs 58 (82)
.++..+.++++++..++.++.+-.- +..+.++...++|++.+-+..
T Consensus 54 ~~~~~e~i~~~~~~~~~~~l~~~~r~~~~~~~~~~p~~~~~~di~~~~~~g~~~iri~~ 112 (275)
T cd07937 54 NEDPWERLRELRKAMPNTPLQMLLRGQNLVGYRHYPDDVVELFVEKAAKNGIDIFRIFD 112 (275)
T ss_pred CCCHHHHHHHHHHhCCCCceehhcccccccCccCCCcHHHHHHHHHHHHcCCCEEEEee
Confidence 4566888888888766666654332 367777888888998876643
No 494
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=64.41 E-value=33 Score=23.89 Aligned_cols=43 Identities=12% Similarity=0.126 Sum_probs=31.3
Q ss_pred chHHHHHHHHHhCCCCcEEEEcCCCc-------ccHHHHHHcCCCEEEEec
Q psy11601 15 DMMPKVKWLRENYPTLNIEVDGGVGP-------NTIDECAKAGANWIVSGT 58 (82)
Q Consensus 15 ~~~~ki~~~~~~~~~~~i~~dGGI~~-------~ni~~~~~~Gad~vv~gs 58 (82)
..++-++++|+. +++|++.-+=.|+ +-++.+.++|+|++++--
T Consensus 78 ~~~~~~~~~r~~-~~~p~vlm~Y~N~i~~~G~e~F~~~~~~aGvdgviipD 127 (263)
T CHL00200 78 KILSILSEVNGE-IKAPIVIFTYYNPVLHYGINKFIKKISQAGVKGLIIPD 127 (263)
T ss_pred HHHHHHHHHhcC-CCCCEEEEecccHHHHhCHHHHHHHHHHcCCeEEEecC
Confidence 467777787754 4678777775553 358899999999998743
No 495
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=64.34 E-value=19 Score=25.06 Aligned_cols=54 Identities=13% Similarity=-0.015 Sum_probs=35.6
Q ss_pred CCCCCCCCCcchHHHHHHHHHhCCCCcEEEEcCCC--cccHHHHHHcCCCEEEEecc
Q psy11601 5 PGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVG--PNTIDECAKAGANWIVSGTA 59 (82)
Q Consensus 5 pG~~gq~~~~~~~~ki~~~~~~~~~~~i~~dGGI~--~~ni~~~~~~Gad~vv~gs~ 59 (82)
|...|=|.....+.++.++.+..+ -.+.+-.|-. ...+.....+|+++++.+.+
T Consensus 151 pnivgiKds~~d~~~~~~~~~~~~-~~~~v~~G~~~~d~~~~~~l~~Ga~G~is~~~ 206 (289)
T cd00951 151 PNLVGFKDGVGDIELMRRIVAKLG-DRLLYLGGLPTAEVFALAYLAMGVPTYSSAVF 206 (289)
T ss_pred CCEEEEEeCCCCHHHHHHHHHhcC-CCeEEEeCCCcchHhHHHHHHCCCCEEEechh
Confidence 445555555556677777655543 2577777763 44467778999999998844
No 496
>cd00853 NifX NifX belongs to a family of iron-molybdenum cluster-binding proteins that includes NifB, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. The protein is part of the nitrogen fixation gene cluster in nitrogen-fixing bacteria and has sequence similarity to other members of the cluster.
Probab=64.23 E-value=26 Score=20.35 Aligned_cols=42 Identities=14% Similarity=0.074 Sum_probs=31.2
Q ss_pred CCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCCCCHHHHHHHH
Q psy11601 28 PTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINCPDRIQAISTL 73 (82)
Q Consensus 28 ~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l 73 (82)
..+.+++.|+|...-...|.+.|+..+...+ ..++.++++++
T Consensus 60 ~~~~vvi~~~iG~~a~~~L~~~GI~v~~~~~----~~~v~eal~~~ 101 (102)
T cd00853 60 EDCAILYCAAIGGPAAARLVRAGIHPIKVPE----GEPIAELLEEL 101 (102)
T ss_pred CCCcEEEEhhcChhHHHHHHHcCCEEEEcCC----CCcHHHHHHhh
Confidence 3799999999999999999999998874332 12455555443
No 497
>PRK08508 biotin synthase; Provisional
Probab=64.19 E-value=13 Score=25.91 Aligned_cols=58 Identities=16% Similarity=0.177 Sum_probs=37.7
Q ss_pred HHHHHHHHhCCCCcEE-EEcCCCcccHHHHHHcCCCEEEEe----ccccC----CCCHHHHHHHHHH
Q psy11601 18 PKVKWLRENYPTLNIE-VDGGVGPNTIDECAKAGANWIVSG----TAVIN----CPDRIQAISTLKS 75 (82)
Q Consensus 18 ~ki~~~~~~~~~~~i~-~dGGI~~~ni~~~~~~Gad~vv~g----s~i~~----~~d~~~~~~~l~~ 75 (82)
+-++.+++..|++.++ -.|=.+.+.+..+.++|+|.+-.+ ..+|. ..++.+.++.++.
T Consensus 79 ei~~~ik~~~p~l~i~~s~G~~~~e~l~~Lk~aGld~~~~~lEt~~~~~~~i~~~~~~~~~l~~i~~ 145 (279)
T PRK08508 79 EAAKAVKKEVPGLHLIACNGTASVEQLKELKKAGIFSYNHNLETSKEFFPKICTTHTWEERFQTCEN 145 (279)
T ss_pred HHHHHHHhhCCCcEEEecCCCCCHHHHHHHHHcCCCEEcccccchHHHhcCCCCCCCHHHHHHHHHH
Confidence 3344555555566654 567789999999999999998854 22443 3456665555443
No 498
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=63.60 E-value=41 Score=23.72 Aligned_cols=46 Identities=20% Similarity=0.232 Sum_probs=36.2
Q ss_pred chHHHHHHHHHhCCCCcEEEEcC--CCcccHHHHHHcCCCEEEEecccc
Q psy11601 15 DMMPKVKWLRENYPTLNIEVDGG--VGPNTIDECAKAGANWIVSGTAVI 61 (82)
Q Consensus 15 ~~~~ki~~~~~~~~~~~i~~dGG--I~~~ni~~~~~~Gad~vv~gs~i~ 61 (82)
-.++.|+++++.. ++|++.=|| +..+.++.+.+.|+.-+=+++.+.
T Consensus 183 L~~~~L~~i~~~~-~vPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~T~l~ 230 (276)
T cd00947 183 LDFDRLKEIAERV-NVPLVLHGGSGIPDEQIRKAIKLGVCKININTDLR 230 (276)
T ss_pred cCHHHHHHHHHHh-CCCEEEeCCCCCCHHHHHHHHHcCCeEEEeChHHH
Confidence 3466777777765 578887775 667889999999999998888875
No 499
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=63.24 E-value=21 Score=24.45 Aligned_cols=42 Identities=14% Similarity=0.186 Sum_probs=27.9
Q ss_pred HHHHHHHHHhCCCCcE-EEEcCCCcccHHHHHHcCCCEEEEecc
Q psy11601 17 MPKVKWLRENYPTLNI-EVDGGVGPNTIDECAKAGANWIVSGTA 59 (82)
Q Consensus 17 ~~ki~~~~~~~~~~~i-~~dGGI~~~ni~~~~~~Gad~vv~gs~ 59 (82)
++.|.++.+.. ++.+ .-.|-++.+.++.+.++|++.+.++-.
T Consensus 100 ~~~i~~~~~~~-~i~~~~~~g~~~~e~l~~Lk~aG~~~v~i~~E 142 (296)
T TIGR00433 100 VEAMVQIVEEM-GLKTCATLGLLDPEQAKRLKDAGLDYYNHNLD 142 (296)
T ss_pred HHHHHHHHHhC-CCeEEecCCCCCHHHHHHHHHcCCCEEEEccc
Confidence 44444433322 3444 334778999999999999999988744
No 500
>PRK04208 rbcL ribulose bisophosphate carboxylase; Reviewed
Probab=63.19 E-value=22 Score=27.09 Aligned_cols=51 Identities=8% Similarity=0.099 Sum_probs=40.0
Q ss_pred CcEEEEcCCCcccHHHHH-HcCCCEEEEe-ccccC-CCCHHHHHHHHHHHHHHh
Q psy11601 30 LNIEVDGGVGPNTIDECA-KAGANWIVSG-TAVIN-CPDRIQAISTLKSSVQKY 80 (82)
Q Consensus 30 ~~i~~dGGI~~~ni~~~~-~~Gad~vv~g-s~i~~-~~d~~~~~~~l~~~~~~~ 80 (82)
+-=+..||+++..++++. ..|-|.+... ..+++ ++.+++-++.+++.++..
T Consensus 367 ~~Pv~SGG~~~g~vp~~~~~~G~Dvil~~GGGi~gHP~G~~aGa~A~rqA~ea~ 420 (468)
T PRK04208 367 VFPVASGGIHPGHMPALLDIFGDDVVLQFGGGTHGHPDGTAAGATANRVALEAC 420 (468)
T ss_pred ceEecCCCCChhHHHHHHHHhCCceEEecCCceecCCCChhhHHHHHHHHHHHH
Confidence 446789999999999665 5688866554 77998 567999999999887653
Done!