RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy11601
(82 letters)
>gnl|CDD|240303 PTZ00170, PTZ00170, D-ribulose-5-phosphate 3-epimerase;
Provisional.
Length = 228
Score = 139 bits (353), Expect = 2e-43
Identities = 52/82 (63%), Positives = 62/82 (75%)
Query: 1 MTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAV 60
MTVEPGFGGQ FM DMMPKV+ LR+ YP LNI+VDGG+ TID A AGAN IV+G+++
Sbjct: 145 MTVEPGFGGQSFMHDMMPKVRELRKRYPHLNIQVDGGINLETIDIAADAGANVIVAGSSI 204
Query: 61 INCPDRIQAISTLKSSVQKYLS 82
DR QAI L+ SVQK+LS
Sbjct: 205 FKAKDRKQAIELLRESVQKHLS 226
>gnl|CDD|215192 PLN02334, PLN02334, ribulose-phosphate 3-epimerase.
Length = 229
Score = 127 bits (322), Expect = 7e-39
Identities = 49/80 (61%), Positives = 63/80 (78%)
Query: 1 MTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAV 60
M+VEPGFGGQ F+ MM KV+ LR+ YP L+IEVDGGVGP+TID+ A+AGAN IV+G+AV
Sbjct: 146 MSVEPGFGGQSFIPSMMDKVRALRKKYPELDIEVDGGVGPSTIDKAAEAGANVIVAGSAV 205
Query: 61 INCPDRIQAISTLKSSVQKY 80
PD + IS L++SV+K
Sbjct: 206 FGAPDYAEVISGLRASVEKA 225
>gnl|CDD|238244 cd00429, RPE, Ribulose-5-phosphate 3-epimerase (RPE). This enzyme
catalyses the interconversion of D-ribulose 5-phosphate
(Ru5P) into D-xylulose 5-phosphate, as part of the
Calvin cycle (reductive pentose phosphate pathway) in
chloroplasts and in the oxidative pentose phosphate
pathway. In the Calvin cycle Ru5P is phosphorylated by
phosphoribulose kinase to ribulose-1,5-bisphosphate,
which in turn is used by RubisCO
(ribulose-1,5-bisphosphate carboxylase/oxygenase) to
incorporate CO2 as the central step in carbohydrate
synthesis.
Length = 211
Score = 119 bits (301), Expect = 9e-36
Identities = 35/78 (44%), Positives = 51/78 (65%), Gaps = 4/78 (5%)
Query: 1 MTVEPGFGGQKFMQDMMPKVKWLRENYP----TLNIEVDGGVGPNTIDECAKAGANWIVS 56
M+V PGFGGQKF+ +++ K++ LRE P L IEVDGG+ TI A+AGA+ +V+
Sbjct: 134 MSVNPGFGGQKFIPEVLEKIRKLRELIPENNLNLLIEVDGGINLETIPLLAEAGADVLVA 193
Query: 57 GTAVINCPDRIQAISTLK 74
G+A+ D +AI L+
Sbjct: 194 GSALFGSDDYAEAIKELR 211
>gnl|CDD|235515 PRK05581, PRK05581, ribulose-phosphate 3-epimerase; Validated.
Length = 220
Score = 109 bits (276), Expect = 6e-32
Identities = 36/80 (45%), Positives = 54/80 (67%), Gaps = 4/80 (5%)
Query: 1 MTVEPGFGGQKFMQDMMPKVKWLR----ENYPTLNIEVDGGVGPNTIDECAKAGANWIVS 56
M+V PGFGGQKF+ +++ K++ LR E + IEVDGG+ + I ECA+AGA+ V+
Sbjct: 138 MSVNPGFGGQKFIPEVLEKIRELRKLIDERGLDILIEVDGGINADNIKECAEAGADVFVA 197
Query: 57 GTAVINCPDRIQAISTLKSS 76
G+AV PD +AI +L++
Sbjct: 198 GSAVFGAPDYKEAIDSLRAE 217
>gnl|CDD|223114 COG0036, Rpe, Pentose-5-phosphate-3-epimerase [Carbohydrate
transport and metabolism].
Length = 220
Score = 106 bits (267), Expect = 1e-30
Identities = 32/83 (38%), Positives = 47/83 (56%), Gaps = 5/83 (6%)
Query: 1 MTVEPGFGGQKFMQDMMPKV----KWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVS 56
M+V PGFGGQKF+ +++ K+ + E L IEVDGG+ TI + A AGA+ V+
Sbjct: 138 MSVNPGFGGQKFIPEVLEKIRELRAMIDERLDIL-IEVDGGINLETIKQLAAAGADVFVA 196
Query: 57 GTAVINCPDRIQAISTLKSSVQK 79
G+A+ D I L+ + K
Sbjct: 197 GSALFGADDYKATIRELRGELLK 219
>gnl|CDD|216142 pfam00834, Ribul_P_3_epim, Ribulose-phosphate 3 epimerase family.
This enzyme catalyzes the conversion of D-ribulose
5-phosphate into D-xylulose 5-phosphate.
Length = 201
Score = 88.9 bits (221), Expect = 6e-24
Identities = 30/68 (44%), Positives = 44/68 (64%), Gaps = 4/68 (5%)
Query: 1 MTVEPGFGGQKFMQDMMPKVKWLR----ENYPTLNIEVDGGVGPNTIDECAKAGANWIVS 56
M+V PGFGGQ F+ ++PK++ +R E IEVDGGV + I + A+AGA+ +V+
Sbjct: 134 MSVNPGFGGQSFIPSVLPKIRKVRKMIDEGGLDTLIEVDGGVNLDNIPQIAEAGADVLVA 193
Query: 57 GTAVINCP 64
G+AV P
Sbjct: 194 GSAVFGAP 201
>gnl|CDD|130231 TIGR01163, rpe, ribulose-phosphate 3-epimerase. This family
consists of Ribulose-phosphate 3-epimerase, also known
as pentose-5-phosphate 3-epimerase (PPE). PPE converts
D-ribulose 5-phosphate into D-xylulose 5-phosphate in
Calvin's reductive pentose phosphate cycle. It has been
found in a wide range of bacteria, archebacteria, fungi
and plants [Energy metabolism, Pentose phosphate
pathway].
Length = 210
Score = 88.1 bits (219), Expect = 1e-23
Identities = 32/79 (40%), Positives = 49/79 (62%), Gaps = 6/79 (7%)
Query: 1 MTVEPGFGGQKFMQDMMPKVKWLRE-----NYPTLNIEVDGGVGPNTIDECAKAGANWIV 55
M+V PGFGGQKF+ D + K++ +R+ L IEVDGGV + E A+AGA+ +V
Sbjct: 133 MSVNPGFGGQKFIPDTLEKIREVRKMIDENGLSIL-IEVDGGVNDDNARELAEAGADILV 191
Query: 56 SGTAVINCPDRIQAISTLK 74
+G+A+ D + I +L+
Sbjct: 192 AGSAIFGADDYKEVIRSLR 210
>gnl|CDD|136958 PRK08745, PRK08745, ribulose-phosphate 3-epimerase; Provisional.
Length = 223
Score = 66.6 bits (162), Expect = 3e-15
Identities = 31/81 (38%), Positives = 50/81 (61%), Gaps = 4/81 (4%)
Query: 1 MTVEPGFGGQKFMQDMMPKVKWLRENYPTLN----IEVDGGVGPNTIDECAKAGANWIVS 56
M+V PGFGGQ F+ + K++ +R+ L +E+DGGV + I A AGA+ V+
Sbjct: 139 MSVNPGFGGQAFIPSALDKLRAIRKKIDALGKPIRLEIDGGVKADNIGAIAAAGADTFVA 198
Query: 57 GTAVINCPDRIQAISTLKSSV 77
G+A+ N PD Q I+ ++++V
Sbjct: 199 GSAIFNAPDYAQVIAQMRAAV 219
>gnl|CDD|181575 PRK08883, PRK08883, ribulose-phosphate 3-epimerase; Provisional.
Length = 220
Score = 65.0 bits (158), Expect = 1e-14
Identities = 29/83 (34%), Positives = 49/83 (59%), Gaps = 4/83 (4%)
Query: 1 MTVEPGFGGQKFMQDMMPKVKWLRENYPT----LNIEVDGGVGPNTIDECAKAGANWIVS 56
M+V PGFGGQ F+ + K++ +R+ + +E+DGGV + I E A+AGA+ V+
Sbjct: 135 MSVNPGFGGQSFIPHTLDKLRAVRKMIDESGRDIRLEIDGGVKVDNIREIAEAGADMFVA 194
Query: 57 GTAVINCPDRIQAISTLKSSVQK 79
G+A+ PD I +++ + K
Sbjct: 195 GSAIFGQPDYKAVIDEMRAELAK 217
>gnl|CDD|236616 PRK09722, PRK09722, allulose-6-phosphate 3-epimerase; Provisional.
Length = 229
Score = 51.9 bits (125), Expect = 9e-10
Identities = 24/63 (38%), Positives = 35/63 (55%), Gaps = 6/63 (9%)
Query: 1 MTVEPGFGGQKFMQDMMPKVKWLRE-----NYPTLNIEVDGGVGPNTIDECAKAGANWIV 55
MTV+PGF GQ F+ +M+ K+ L+ L IEVDG T ++ +AGA+ +
Sbjct: 137 MTVDPGFAGQPFIPEMLDKIAELKALRERNGLEYL-IEVDGSCNQKTYEKLMEAGADVFI 195
Query: 56 SGT 58
GT
Sbjct: 196 VGT 198
Score = 25.3 bits (56), Expect = 3.6
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 43 IDECAKAGANWIVSGTAVIN 62
ID+ A AGA++I IN
Sbjct: 75 IDQLADAGADFITLHPETIN 94
>gnl|CDD|169179 PRK08005, PRK08005, epimerase; Validated.
Length = 210
Score = 43.1 bits (101), Expect = 2e-06
Identities = 23/65 (35%), Positives = 31/65 (47%)
Query: 1 MTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAV 60
MT EP GQ+F+ M KV RE++P DGG+ A AGA +V G A+
Sbjct: 135 MTSEPDGRGQQFIAAMCEKVSQSREHFPAAECWADGGITLRAARLLAAAGAQHLVIGRAL 194
Query: 61 INCPD 65
+
Sbjct: 195 FTTAN 199
>gnl|CDD|216667 pfam01729, QRPTase_C, Quinolinate phosphoribosyl transferase,
C-terminal domain. Quinolinate phosphoribosyl
transferase (QPRTase) or nicotinate-nucleotide
pyrophosphorylase EC:2.4.2.19 is involved in the de novo
synthesis of NAD in both prokaryotes and eukaryotes. It
catalyzes the reaction of quinolinic acid with
5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence
of Mg2+ to give rise to nicotinic acid mononucleotide
(NaMN), pyrophosphate and carbon dioxide. The QA
substrate is bound between the C-terminal domain of one
subunit, and the N-terminal domain of the other. The
C-terminal domain has a 7 beta-stranded TIM barrel-like
fold.
Length = 169
Score = 35.3 bits (82), Expect = 0.001
Identities = 13/46 (28%), Positives = 23/46 (50%)
Query: 14 QDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTA 59
+++ V+ L E + +EV GG+ + + E AK G + I G
Sbjct: 112 EEVREAVEELDERAGRVLLEVSGGITLDNVLEYAKTGVDVISVGAL 157
>gnl|CDD|183964 PRK13307, PRK13307, bifunctional formaldehyde-activating
enzyme/3-hexulose-6-phosphate synthase; Provisional.
Length = 391
Score = 33.1 bits (76), Expect = 0.007
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 34 VDGGVGPNTIDECAKAGANWIVSGTAVINCPD 65
V GGV ++E KAGA+ +V G A+ D
Sbjct: 335 VAGGVRVENVEEALKAGADILVVGRAITKSKD 366
>gnl|CDD|132172 TIGR03128, RuMP_HxlA, 3-hexulose-6-phosphate synthase. Members of
this protein family are 3-hexulose-6-phosphate synthase
(HPS), or the HPS domain of a fusion protein. This
enzyme is part of the ribulose monophosphate (RuMP)
pathway, which in one direction removes the toxic
metabolite formaldehyde by assimilation into
fructose-6-phosphate. In the other direction, in species
lacking a complete pentose phosphate pathway, the RuMP
pathway yields ribulose-5-phosphate, necessary for
nucleotide biosynthesis, at the cost of also yielding
formaldehyde. These latter species tend usually have a
formaldehyde-activating enzyme to attach formaldehyde to
the C1 carrier tetrahydromethanopterin. In these
species, the enzyme is viewed as a lyase rather than a
synthase and is called D-arabino 3-hexulose 6-phosphate
formaldehyde lyase. Note that there is some overlap in
specificity with the Escherichia coli enzyme
3-keto-L-gulonate 6-phosphate decarboxylase.
Length = 206
Score = 32.3 bits (74), Expect = 0.012
Identities = 11/43 (25%), Positives = 22/43 (51%)
Query: 32 IEVDGGVGPNTIDECAKAGANWIVSGTAVINCPDRIQAISTLK 74
+ V GG+ +TI + K G + ++ G A+ D +A ++
Sbjct: 161 VAVAGGINLDTIPDVIKLGPDIVIVGGAITKAADPAEAARQIR 203
>gnl|CDD|238802 cd01568, QPRTase_NadC, Quinolinate phosphoribosyl transferase
(QAPRTase or QPRTase), also called nicotinate-nucleotide
pyrophosphorylase, is involved in the de novo synthesis
of NAD in both prokaryotes and eukaryotes. It catalyses
the reaction of quinolinic acid (QA) with
5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence
of Mg2+ to produce nicotinic acid mononucleotide (NAMN),
pyrophosphate and carbon dioxide. QPRTase functions as a
homodimer with two active sites, each formed by the
C-terminal region of one subunit and the N-terminal
region of the other.
Length = 269
Score = 32.1 bits (74), Expect = 0.013
Identities = 12/38 (31%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Query: 20 VKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSG 57
VK L+ L +E GG+ I A+ G + I +G
Sbjct: 219 VKLLKGLPRVL-LEASGGITLENIRAYAETGVDVISTG 255
>gnl|CDD|216225 pfam00977, His_biosynth, Histidine biosynthesis protein. Proteins
involved in steps 4 and 6 of the histidine biosynthesis
pathway are contained in this family. Histidine is
formed by several complex and distinct biochemical
reactions catalyzed by eight enzymes. The enzymes in
this Pfam entry are called His6 and His7 in eukaryotes
and HisA and HisF in prokaryotes. The structure of HisA
is known to be a TIM barrel fold. In some archaeal HisA
proteins the TIM barrel is composed of two tandem
repeats of a half barrel . This family belong to the
common phosphate binding site TIM barrel family.
Length = 230
Score = 31.3 bits (72), Expect = 0.027
Identities = 12/53 (22%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 20 VKWLRENYPTLNIEVDGGVG-PNTIDECAKAGANWIVSGTAVINCPDRIQAIS 71
++ + E + ++V GG+ + AGA+ ++ GTA + P+ I+ +
Sbjct: 65 IEEIAEEV-FIPVQVGGGIRSLEDAERLLSAGADKVIIGTAAVKNPELIKEAA 116
>gnl|CDD|238317 cd00564, TMP_TenI, Thiamine monophosphate synthase (TMP
synthase)/TenI. TMP synthase catalyzes an important step
in the thiamine biosynthesis pathway, the substitution
of the pyrophosphate of 2-methyl-4-amino-5-
hydroxymethylpyrimidine pyrophosphate by 4-methyl-5-
(beta-hydroxyethyl) thiazole phosphate to yield thiamine
phosphate. TenI is a enzymatically inactive regulatory
protein involved in the regulation of several
extracellular enzymes. This superfamily also contains
other enzymatically inactive proteins with unknown
functions.
Length = 196
Score = 30.9 bits (71), Expect = 0.039
Identities = 14/59 (23%), Positives = 24/59 (40%), Gaps = 5/59 (8%)
Query: 19 KVKWLRE--NYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINCPDRIQAISTLKS 75
++ + E P + I GG+ P E AGA+ + +A+ D A L +
Sbjct: 141 LLREIAELVEIPVVAI---GGITPENAAEVLAAGADGVAVISAITGADDPAAAARELLA 196
>gnl|CDD|236255 PRK08385, PRK08385, nicotinate-nucleotide pyrophosphorylase;
Provisional.
Length = 278
Score = 30.8 bits (70), Expect = 0.044
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
Query: 23 LRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSG 57
LRE + IEV GG+ P I+E AK + I G
Sbjct: 228 LRER---VKIEVSGGITPENIEEYAKLDVDVISLG 259
>gnl|CDD|238286 cd00516, PRTase_typeII, Phosphoribosyltransferase (PRTase) type II;
This family contains two enzymes that play an important
role in NAD production by either allowing quinolinic
acid (QA) , quinolinate phosphoribosyl transferase
(QAPRTase), or nicotinic acid (NA), nicotinate
phosphoribosyltransferase (NAPRTase), to be used in the
synthesis of NAD. QAPRTase catalyses the reaction of
quinolinic acid (QA) with
5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence
of Mg2+ to produce nicotinic acid mononucleotide (NAMN),
pyrophosphate and carbon dioxide, an important step in
the de novo synthesis of NAD. NAPRTase catalyses a
similar reaction leading to NAMN and pyrophosphate,
using nicotinic acid an PPRP as substrates, used in the
NAD salvage pathway.
Length = 281
Score = 30.7 bits (70), Expect = 0.056
Identities = 11/38 (28%), Positives = 17/38 (44%)
Query: 27 YPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINCP 64
P + IE GG+ I A+ G + GT + + P
Sbjct: 237 LPRVKIEASGGLDEENIRAYAETGVDVFGVGTLLHSAP 274
>gnl|CDD|223235 COG0157, NadC, Nicotinate-nucleotide pyrophosphorylase [Coenzyme
metabolism].
Length = 280
Score = 29.8 bits (68), Expect = 0.097
Identities = 9/26 (34%), Positives = 13/26 (50%)
Query: 32 IEVDGGVGPNTIDECAKAGANWIVSG 57
+E GG+ I E A+ G + I G
Sbjct: 237 LEASGGITLENIREYAETGVDVISVG 262
>gnl|CDD|238807 cd01573, modD_like, ModD; Quinolinate phosphoribosyl transferase
(QAPRTase or QPRTase) present in some modABC operons in
bacteria, which are involved in molybdate transport. In
general, QPRTases are part of the de novo synthesis
pathway of NAD in both prokaryotes and eukaryotes. They
catalyse the reaction of quinolinic acid (QA) with
5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence
of Mg2+ to produce nicotinic acid mononucleotide (NAMN),
pyrophosphate and carbon dioxide.
Length = 272
Score = 29.2 bits (66), Expect = 0.14
Identities = 11/37 (29%), Positives = 17/37 (45%)
Query: 20 VKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVS 56
V LR P + + GG+ A AGA+ +V+
Sbjct: 221 VPKLRSLAPPVLLAAAGGINIENAAAYAAAGADILVT 257
>gnl|CDD|224560 COG1646, COG1646, Predicted phosphate-binding enzymes, TIM-barrel
fold [General function prediction only].
Length = 240
Score = 29.2 bits (66), Expect = 0.15
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 34 VDGGV-GPNTIDECAKAGANWIVSGTAVINCPDRIQAI 70
V GG+ P E A+AGA+ IV+GT + PD+
Sbjct: 196 VGGGIRSPEQAREMAEAGADTIVTGTIIEEDPDKALET 233
>gnl|CDD|188632 cd00452, KDPG_aldolase, KDPG and KHG aldolase. KDPG and KHG
aldolase. This family belongs to the class I adolases
whose reaction mechanism involves Schiff base formation
between a substrate carbonyl and lysine residue in the
active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG)
aldolase, is best known for its role in the
Entner-Doudoroff pathway of bacteria, where it
catalyzes the reversible cleavage of KDPG to pyruvate
and glyceraldehyde-3-phosphate.
2-keto-4-hydroxyglutarate (KHG) aldolase, which has
enzymatic specificity toward glyoxylate, forming KHG in
the presence of pyruvate, and is capable of regulating
glyoxylate levels in the glyoxylate bypass, an
alternate pathway when bacteria are grown on acetate
carbon sources.
Length = 190
Score = 28.6 bits (65), Expect = 0.22
Identities = 14/38 (36%), Positives = 17/38 (44%), Gaps = 8/38 (21%)
Query: 23 LRENYPTLNIEVDGGVG----PNTIDECAKAGANWIVS 56
LR+ +P I G G P D AGA +IVS
Sbjct: 49 LRKEFPEALI----GAGTVLTPEQADAAIAAGAQFIVS 82
>gnl|CDD|234590 PRK00043, thiE, thiamine-phosphate pyrophosphorylase; Reviewed.
Length = 212
Score = 28.2 bits (64), Expect = 0.33
Identities = 11/46 (23%), Positives = 20/46 (43%)
Query: 36 GGVGPNTIDECAKAGANWIVSGTAVINCPDRIQAISTLKSSVQKYL 81
GG+ P E +AGA+ + +A+ D A L ++ +
Sbjct: 167 GGITPENAPEVLEAGADGVAVVSAITGAEDPEAAARALLAAFRAAR 212
>gnl|CDD|180286 PRK05848, PRK05848, nicotinate-nucleotide pyrophosphorylase;
Provisional.
Length = 273
Score = 28.5 bits (64), Expect = 0.33
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 20 VKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSG 57
V + NYP + +E G + I+ AK+G + I SG
Sbjct: 220 VAYRNANYPHVLLEASGNITLENINAYAKSGVDAISSG 257
>gnl|CDD|240077 cd04726, KGPDC_HPS, 3-Keto-L-gulonate 6-phosphate decarboxylase
(KGPDC) and D-arabino-3-hexulose-6-phosphate synthase
(HPS). KGPDC catalyzes the formation of L-xylulose
5-phosphate and carbon dioxide from 3-keto-L-gulonate
6-phosphate as part of the anaerobic pathway for
L-ascorbate utilization in some eubacteria. HPS
catalyzes the formation of
D-arabino-3-hexulose-6-phosphate from D-ribulose
5-phosphate and formaldehyde in microorganisms that can
use formaldehyde as a carbon source. Both catalyze
reactions that involve the Mg2+-assisted formation and
stabilization of 1,2-enediolate reaction intermediates.
Length = 202
Score = 27.9 bits (63), Expect = 0.40
Identities = 14/39 (35%), Positives = 23/39 (58%)
Query: 32 IEVDGGVGPNTIDECAKAGANWIVSGTAVINCPDRIQAI 70
+ V GG+ P+T+ E KAGA+ ++ G A+ D +A
Sbjct: 161 VAVAGGITPDTLPEFKKAGADIVIVGRAITGAADPAEAA 199
Score = 27.2 bits (61), Expect = 0.70
Identities = 17/51 (33%), Positives = 21/51 (41%), Gaps = 12/51 (23%)
Query: 17 MPKVKWLRENYPTLNIEVDGGVGPNTIDE-------CAKAGANWI-VSGTA 59
M V+ LRE +P I D T D KAGA+ + V G A
Sbjct: 41 MEAVRALREAFPDKIIVADL----KTADAGALEAEMAFKAGADIVTVLGAA 87
>gnl|CDD|223184 COG0106, HisA, Phosphoribosylformimino-5-aminoimidazole carboxamide
ribonucleotide (ProFAR) isomerase [Amino acid transport
and metabolism].
Length = 241
Score = 27.9 bits (63), Expect = 0.49
Identities = 11/47 (23%), Positives = 22/47 (46%), Gaps = 7/47 (14%)
Query: 29 TLNIEVDGGVGPNTIDECAK----AGANWIVSGTAVINCPDRIQAIS 71
+ ++V GG+ E + AG ++ GTA + PD ++ +
Sbjct: 75 DVPVQVGGGI---RSLEDVEALLDAGVARVIIGTAAVKNPDLVKELC 118
>gnl|CDD|235237 PRK04169, PRK04169, geranylgeranylglyceryl phosphate synthase-like
protein; Reviewed.
Length = 232
Score = 27.9 bits (63), Expect = 0.51
Identities = 12/46 (26%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
Query: 34 VDGGV-GPNTIDECAKAGANWIVSGTAVINCPDRIQAISTLKSSVQ 78
GG+ P E AGA+ IV G + D + + +K +++
Sbjct: 189 YGGGIRSPEQARELMAAGADTIVVGNIIEE--DPKKTVKAIKKAIK 232
>gnl|CDD|212663 cd07782, FGGY_YpCarbK_like, Yersinia Pseudotuberculosis
carbohydrate kinase-like subgroup; belongs to the FGGY
family of carbohydrate kinases. This subgroup is
composed of the uncharacterized Yersinia
Pseudotuberculosis carbohydrate kinase that has been
named glyerol/xylulose kinase and similar
uncharacterized proteins from bacteria and eukaryota.
Carbohydrate kinases catalyze the ATP-dependent
phosphorylation of their carbohydrate substrate to
produce phosphorylated sugar and ADP. The presence of
Mg2+ is required for catalytic activity. This subgroup
shows high homology to characterized ribulokinases and
belongs to the FGGY family of carbohydrate kinases, the
monomers of which contain two large domains, which are
separated by a deep cleft that forms the active site.
This model includes both the N-terminal domain, which
adopts a ribonuclease H-like fold, and the structurally
related C-terminal domain.
Length = 536
Score = 27.9 bits (63), Expect = 0.52
Identities = 8/16 (50%), Positives = 11/16 (68%), Gaps = 2/16 (12%)
Query: 13 MQDMMPKVKWLRENYP 28
M+ PK+ WL+EN P
Sbjct: 138 ME--TPKLLWLKENLP 151
>gnl|CDD|223429 COG0352, ThiE, Thiamine monophosphate synthase [Coenzyme
metabolism].
Length = 211
Score = 27.6 bits (62), Expect = 0.54
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 9/44 (20%)
Query: 20 VKWLRE--NYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVI 61
++ +RE N P + I GG+ + E +AGA+ G AV+
Sbjct: 150 LREIRELVNIPVVAI---GGINLENVPEVLEAGAD----GVAVV 186
>gnl|CDD|223347 COG0269, SgbH, 3-hexulose-6-phosphate synthase and related
proteins [Carbohydrate transport and metabolism].
Length = 217
Score = 27.2 bits (61), Expect = 0.76
Identities = 17/51 (33%), Positives = 22/51 (43%), Gaps = 12/51 (23%)
Query: 17 MPKVKWLRENYPTLNIEVDGGVGPNTIDE-------CAKAGANWI-VSGTA 59
M V+ LRE +P I D T D +AGA+W+ V G A
Sbjct: 44 MRAVRALRELFPDKIIVADL----KTADAGAIEARMAFEAGADWVTVLGAA 90
>gnl|CDD|233439 TIGR01496, DHPS, dihydropteroate synthase. This model represents
dihydropteroate synthase, the enzyme that catalyzes the
second to last step in folic acid biosynthesis. The gene
is usually designated folP (folic acid biosynthsis) or
sul (sulfanilamide resistance). This model represents
one branch of the family of pterin-binding enzymes
(pfam00809) and of a cluster of dihydropteroate synthase
and related enzymes (COG0294). Other members of
pfam00809 and COG0294 are represented by model TIGR00284
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Folic acid].
Length = 257
Score = 26.8 bits (60), Expect = 1.0
Identities = 14/42 (33%), Positives = 18/42 (42%), Gaps = 4/42 (9%)
Query: 18 PKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWI--VSG 57
P +K LR+ I VD +AGA+ I VSG
Sbjct: 65 PVIKALRDQPDVP-ISVDT-YRAEVARAALEAGADIINDVSG 104
>gnl|CDD|218948 pfam06230, DUF1009, Protein of unknown function (DUF1009). Family
of uncharacterized bacterial proteins.
Length = 212
Score = 26.7 bits (60), Expect = 1.1
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 3/35 (8%)
Query: 38 VGPNTIDECAKAGANWIV---SGTAVINCPDRIQA 69
+GP+TI+ A+AG I T V++ I A
Sbjct: 168 IGPDTIETAAEAGLAGIAVEAGKTLVLDREAVIAA 202
>gnl|CDD|235912 PRK07028, PRK07028, bifunctional hexulose-6-phosphate
synthase/ribonuclease regulator; Validated.
Length = 430
Score = 26.9 bits (60), Expect = 1.1
Identities = 12/46 (26%), Positives = 23/46 (50%)
Query: 32 IEVDGGVGPNTIDECAKAGANWIVSGTAVINCPDRIQAISTLKSSV 77
I V GG+ T + AGA+ ++ G +I D +A ++ ++
Sbjct: 165 IAVAGGLDAETAAKAVAAGADIVIVGGNIIKSADVTEAARKIREAI 210
Score = 24.2 bits (53), Expect = 8.6
Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 44 DECAKAGANWIVSGTAVINCPDRIQAISTLKS 75
E GA+WI +GT +I + + AI TL+
Sbjct: 23 KEAVAGGADWIEAGTPLIK-SEGMNAIRTLRK 53
Score = 24.2 bits (53), Expect = 9.4
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Query: 17 MPKVKWLRENYPTLNIEVD---GGVGPNTIDECAKAGAN 52
M ++ LR+N+P I D G ++ AKAGA+
Sbjct: 45 MNAIRTLRKNFPDHTIVADMKTMDTGAIEVEMAAKAGAD 83
>gnl|CDD|217120 pfam02581, TMP-TENI, Thiamine monophosphate synthase/TENI.
Thiamine monophosphate synthase (TMP) (EC:2.5.1.3)
catalyzes the substitution of the pyrophosphate of
2-methyl-4-amino-5- hydroxymethylpyrimidine
pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole
phosphate to yield thiamine phosphate. This Pfam family
also includes the regulatory protein TENI.
Length = 180
Score = 26.7 bits (60), Expect = 1.2
Identities = 10/26 (38%), Positives = 14/26 (53%), Gaps = 4/26 (15%)
Query: 36 GGVGPNTIDECAKAGANWIVSGTAVI 61
GG+ P + E +AGA G AV+
Sbjct: 156 GGITPENVPEVLEAGA----DGVAVV 177
>gnl|CDD|239206 cd02812, PcrB_like, PcrB_like proteins. One member of this family,
a protein from Archaeoglobus fulgidus, has been
characterized as a (S)-3-O-geranylgeranylglyceryl
phosphate synthase (AfGGGPS). AfGGGPS catalyzes the
formation of an ether linkage between
sn-glycerol-1-phosphate (G1P) and geranylgeranyl
diphosphate (GGPP), the committed step in archaeal lipid
biosynthesis. Therefore, it has been proposed that
PcrB-like proteins are either prenyltransferases or are
involved in lipoteichoic acid biosynthesis although the
exact function is still unknown.
Length = 219
Score = 26.4 bits (59), Expect = 1.3
Identities = 13/38 (34%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 34 VDGGV-GPNTIDECAKAGANWIVSGTAVINCPDRIQAI 70
V GG+ E A+AGA+ IV G V P+
Sbjct: 180 VGGGIRSGEQAKEMAEAGADTIVVGNIVEEDPNAALET 217
>gnl|CDD|202027 pfam01884, PcrB, PcrB family. This family contains proteins that
are related to PcrB. The function of these proteins is
unknown.
Length = 231
Score = 26.7 bits (59), Expect = 1.4
Identities = 13/47 (27%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Query: 29 TLNIEVDGGV-GPNTIDECAKAGANWIVSGTAVINCPDRIQAISTLK 74
+ V GG+ E A+AGA+ IV+G + +AI +
Sbjct: 182 DARLIVGGGIKSGEKAKEMARAGADVIVTGNVIEEKGKVERAIDAIL 228
>gnl|CDD|236991 PRK11815, PRK11815, tRNA-dihydrouridine synthase A; Provisional.
Length = 333
Score = 26.3 bits (59), Expect = 1.7
Identities = 10/32 (31%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Query: 18 PKVKWLRENYPTLNIEVDGGVGPNTIDECAKA 49
+V L+ ++P L IE++GG+ T++E +
Sbjct: 194 DRVYRLKRDFPHLTIEINGGI--KTLEEAKEH 223
>gnl|CDD|219515 pfam07687, M20_dimer, Peptidase dimerisation domain. This domain
consists of 4 beta strands and two alpha helices which
make up the dimerisation surface of members of the M20
family of peptidases. This family includes a range of
zinc metallopeptidases belonging to several families in
the peptidase classification. Family M20 are Glutamate
carboxypeptidases. Peptidase family M25 contains X-His
dipeptidases.
Length = 107
Score = 25.8 bits (57), Expect = 1.8
Identities = 10/24 (41%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
Query: 27 YPTLNI-EVDGGVGPNTIDECAKA 49
TLNI ++GG N I A+A
Sbjct: 53 RTTLNITGIEGGTARNVIPAEAEA 76
>gnl|CDD|238806 cd01572, QPRTase, Quinolinate phosphoribosyl transferase (QAPRTase
or QPRTase), also called nicotinate-nucleotide
pyrophosphorylase, is involved in the de novo synthesis
of NAD in both prokaryotes and eukaryotes. It catalyses
the reaction of quinolinic acid (QA) with
5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence
of Mg2+ to produce nicotinic acid mononucleotide (NAMN),
pyrophosphate and carbon dioxide. QPRTase functions as a
homodimer with two active sites, each formed by the
C-terminal region of one subunit and the N-terminal
region of the other.
Length = 268
Score = 25.9 bits (58), Expect = 2.1
Identities = 10/38 (26%), Positives = 16/38 (42%), Gaps = 3/38 (7%)
Query: 20 VKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSG 57
V L+ +E GG+ I A+ G ++I G
Sbjct: 220 VALLKGRVL---LEASGGITLENIRAYAETGVDYISVG 254
>gnl|CDD|223995 COG1069, AraB, Ribulose kinase [Energy production and conversion].
Length = 544
Score = 26.1 bits (58), Expect = 2.1
Identities = 6/13 (46%), Positives = 9/13 (69%)
Query: 16 MMPKVKWLRENYP 28
M+PK+ WL+ P
Sbjct: 142 MIPKLMWLKREAP 154
>gnl|CDD|130401 TIGR01334, modD, putative molybdenum utilization protein ModD. The
gene modD for a member of this family is found with
molybdenum transport genes modABC in Rhodobacter
capsulatus. However, disruption of modD causes only a
4-fold (rather than 500-fold for modA, modB, modC)
change in the external molybdenum concentration required
to suppress an alternative nitrogenase. ModD proteins
are highly similar to nicotinate-nucleotide
pyrophosphorylase (also called quinolinate
phosphoribosyltransferase). The function unknown
[Unknown function, General].
Length = 277
Score = 26.0 bits (57), Expect = 2.2
Identities = 8/43 (18%), Positives = 16/43 (37%)
Query: 28 PTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINCPDRIQAI 70
+ GG+ P I + +AG + ++ P I+
Sbjct: 234 HIPTLAAAGGINPENIADYIEAGIDLFITSAPYYAAPCDIKVK 276
>gnl|CDD|193529 cd05652, M20_ArgE_DapE_like_fungal, M20 Peptidases with similarity
to acetylornithine deacetylases and
succinyl-diaminopimelate desuccinylases. Peptidase M20
family, Uncharacterized protein subfamily with
similarity to acetylornithine
deacetylase/succinyl-diaminopimelate desuccinylase
(ArgE/DapE) subfamily. ArgE/DapE enzymes catalyze
analogous reactions and share a common activator, the
metal ion (usually Co2+ or Zn2+). ArgE catalyzes a broad
range of substrates, including N-acetylornithine,
alpha-N-acetylmethionine and alpha-N-formylmethionine,
while DapE catalyzes the hydrolysis of
N-succinyl-L,L-diaminopimelate (L,L-SDAP) to
L,L-diaminopimelate and succinate. Proteins in this
subfamily are mostly fungal, and have been inferred by
homology as being related to both ArgE and DapE.
Length = 335
Score = 25.6 bits (57), Expect = 2.6
Identities = 11/22 (50%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
Query: 29 TLNI-EVDGGVGPNTIDECAKA 49
TLNI ++GGV N I A+A
Sbjct: 210 TLNIGLIEGGVAANVIPAHAEA 231
>gnl|CDD|220210 pfam09374, PG_binding_3, Predicted Peptidoglycan domain. This
family contains a potential peptidoglycan binding
domain.
Length = 67
Score = 24.6 bits (54), Expect = 3.1
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 20 VKWLRENYPTLNIEVDGGVGPNTIDECAKAGAN 52
+K L+ ++ DG +GP T+ A G N
Sbjct: 3 IKMLQRALGQPDVAADGIIGPKTLAALASMGEN 35
>gnl|CDD|238380 cd00739, DHPS, DHPS subgroup of Pterin binding enzymes. DHPS
(dihydropteroate synthase), a functional homodimer,
catalyzes the condensation of p-aminobenzoic acid (pABA)
in the de novo biosynthesis of folate, which is an
essential cofactor in both nucleic acid and protein
biosynthesis. Prokaryotes (and some lower eukaryotes)
must synthesize folate de novo, while higher eukaryotes
are able to utilize dietary folate and therefore lack
DHPS. Sulfonamide drugs, which are substrate analogs of
pABA, target DHPS.
Length = 257
Score = 25.6 bits (57), Expect = 3.1
Identities = 14/42 (33%), Positives = 18/42 (42%), Gaps = 4/42 (9%)
Query: 18 PKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWI--VSG 57
P ++ LR L I VD +AGA+ I VSG
Sbjct: 66 PVLEALRGELDVL-ISVDT-FRAEVARAALEAGADIINDVSG 105
>gnl|CDD|240076 cd04725, OMP_decarboxylase_like, Orotidine 5'-phosphate
decarboxylase (ODCase) is a dimeric enzyme that
decarboxylates orotidine 5'-monophosphate (OMP) to form
uridine 5'-phosphate (UMP), an essential step in the
pyrimidine biosynthetic pathway. In mammals, UMP
synthase contains two domains: the orotate
phosphoribosyltransferase (OPRTase) domain that
catalyzes the transfer of phosphoribosyl
5'-pyrophosphate (PRPP) to orotate to form OMP, and the
orotidine-5'-phosphate decarboxylase (ODCase) domain
that decarboxylates OMP to form UMP.
Length = 216
Score = 25.2 bits (56), Expect = 3.9
Identities = 11/44 (25%), Positives = 19/44 (43%), Gaps = 10/44 (22%)
Query: 37 GVGP----------NTIDECAKAGANWIVSGTAVINCPDRIQAI 70
G+G T ++ +AGA++IV G + D + A
Sbjct: 170 GIGAQGSGDDQKRGGTPEDAIRAGADYIVVGRPITQAADPVAAA 213
>gnl|CDD|163674 cd03174, DRE_TIM_metallolyase, DRE-TIM metallolyase superfamily.
The DRE-TIM metallolyase superfamily includes
2-isopropylmalate synthase (IPMS), alpha-isopropylmalate
synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase,
homocitrate synthase, citramalate synthase,
4-hydroxy-2-oxovalerate aldolase, re-citrate synthase,
transcarboxylase 5S, pyruvate carboxylase, AksA, and
FrbC. These members all share a conserved
triose-phosphate isomerase (TIM) barrel domain
consisting of a core beta(8)-alpha(8) motif with the
eight parallel beta strands forming an enclosed barrel
surrounded by eight alpha helices. The domain has a
catalytic center containing a divalent cation-binding
site formed by a cluster of invariant residues that cap
the core of the barrel. In addition, the catalytic site
includes three invariant residues - an aspartate (D), an
arginine (R), and a glutamate (E) - which is the basis
for the domain name "DRE-TIM".
Length = 265
Score = 25.1 bits (56), Expect = 3.9
Identities = 11/40 (27%), Positives = 20/40 (50%), Gaps = 6/40 (15%)
Query: 20 VKWLRENYPTLNIEV----DGGVGP-NTIDECAKAGANWI 54
VK LRE P + + + G+ N++ +AGA+ +
Sbjct: 181 VKALREALPDVPLGLHTHNTLGLAVANSL-AALEAGADRV 219
>gnl|CDD|183779 PRK12830, PRK12830, UDP-N-acetylglucosamine
1-carboxyvinyltransferase; Reviewed.
Length = 417
Score = 25.2 bits (56), Expect = 5.1
Identities = 10/29 (34%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Query: 41 NTIDECAKAGANWIVSG-TAVINCPDRIQ 68
+DE + GAN V G +A+I P ++
Sbjct: 332 KHVDELKRMGANIKVEGRSAIITGPSKLT 360
>gnl|CDD|211398 cd11560, W2_eIF5C_like, C-terminal W2 domain of the eukaryotic
translation initiation factor 5C and similar proteins.
eIF5C appears to be essential for the initiation of
protein translation; its actual function, and
specifically that of the C-terminal W2 domain, are not
well understood. The Drosophila ortholog, kra
(krasavietz) or exba (extra bases), may be involved in
translational inhibition in neural development. The
structure of this C-terminal domain resembles that of a
set of concatenated HEAT repeats.
Length = 194
Score = 24.9 bits (55), Expect = 5.7
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 8 GGQKFMQDMMPKVKWLRE 25
G Q F++ M P V+WL+E
Sbjct: 173 GKQVFLKQMEPFVEWLQE 190
>gnl|CDD|233094 TIGR00693, thiE, thiamine-phosphate pyrophosphorylase. This model
represents the thiamine-phosphate pyrophosphorylase,
ThiE, of a number of bacteria, and N-terminal domains of
bifunctional thiamine proteins of Saccharomyces
cerevisiae and Schizosaccharomyces pombe, in which the
C-terminal domain corresponds to the bacterial
hydroxyethylthiazole kinase (EC 2.7.1.50), ThiM. This
model includes ThiE from Bacillus subtilis but excludes
its paralog, the regulatory protein TenI , and neighbors
of TenI [Biosynthesis of cofactors, prosthetic groups,
and carriers, Thiamine].
Length = 196
Score = 24.9 bits (55), Expect = 5.8
Identities = 10/42 (23%), Positives = 17/42 (40%), Gaps = 4/42 (9%)
Query: 20 VKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVI 61
++ + + I GG+ E AGA+ G AV+
Sbjct: 143 LREIAATSIDIPIVAIGGITLENAAEVLAAGAD----GVAVV 180
>gnl|CDD|176477 cd08640, DNA_pol_A_plastid_like, DNA polymerase A type from
plastids of higher plants possibly involve in DNA
replication or in the repair of errors occurring during
replication. DNA polymerase A type from plastids of
higher plants possibly involve in DNA replication or in
the repair of errors occurring during replication.
Family A polymerase functions primarily to fill DNA
gaps that arise during DNA repair, recombination and
replication. DNA-dependent DNA polymerases can be
classified in six main groups based upon phylogenetic
relationships with E. coli polymerase I (classA), E.
coli polymerase II (class B), E.coli polymerase III
(class C), euryarchaaeota polymerase II (class D),
human polymerase beta (class x), E. coli UmuC/DinB and
eukaryotic RAP 30/Xeroderma pigmentosum variant (class
Y). Family A polymerase are found primarily in
organisms related to prokaryotes and include
prokaryotic DNA polymerase I ,mitochondrial polymerase
delta, and several bacteriphage polymerases including
those from odd-numbered phage (T3, T5, and T7). The
three-dimensional structure of plastid DNA polymerase
has substantial similarity to Pol I. The structure of
Pol I resembles in overall morphology a cupped human
right hand, with fingers (which bind an incoming
nucleotide and interact with the single-stranded
template), palm (which harbors the catalytic amino acid
residues and also binds an incoming dNTP) and thumb
(which binds double-stranded DNA) subdomains.
Length = 371
Score = 24.7 bits (54), Expect = 5.9
Identities = 9/32 (28%), Positives = 14/32 (43%), Gaps = 4/32 (12%)
Query: 55 VSGTAVINCPDRIQAISTLKSSV----QKYLS 82
I I++ISTL S+ Q+ L+
Sbjct: 39 KEACEAIEALKEIKSISTLLSTFIIPLQELLN 70
>gnl|CDD|233356 TIGR01315, 5C_CHO_kinase, FGGY-family pentulose kinase. This model
represents a subfamily of the FGGY family of
carbohydrate kinases. This subfamily is closely related
to a set of ribulose kinases, and many members are
designated ribitol kinase. However, the member from
Klebsiella pneumoniae, from a ribitol catabolism operon,
accepts D-ribulose and to a lesser extent D-arabinitol
and ribitol (PMID:9639934 and JW Lengeler, personal
communication); its annotation in GenBank as ribitol
kinase is imprecise and may have affected public
annotation of related proteins.
Length = 541
Score = 24.9 bits (54), Expect = 6.4
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 8 GGQKFMQDMMPKVKWLRENYP 28
GG+ ++ +PKV WL+ N P
Sbjct: 130 GGKMSVEMEIPKVLWLKNNMP 150
>gnl|CDD|237286 PRK13125, trpA, tryptophan synthase subunit alpha; Provisional.
Length = 244
Score = 24.6 bits (54), Expect = 6.6
Identities = 10/28 (35%), Positives = 16/28 (57%), Gaps = 3/28 (10%)
Query: 37 GVGPNTIDECAK---AGANWIVSGTAVI 61
G G ++ ++ AGA+ +V GTA I
Sbjct: 191 GFGLDSPEDARDALSAGADGVVVGTAFI 218
>gnl|CDD|236192 PRK08228, PRK08228, L(+)-tartrate dehydratase subunit beta;
Validated.
Length = 204
Score = 24.6 bits (54), Expect = 6.9
Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Query: 36 GGVGPNTIDECAKAGANWIV--SGTAVI 61
GG+GP T + C + A V +G AV+
Sbjct: 106 GGMGPGTEEGCQEFKALHCVFPAGCAVL 133
>gnl|CDD|179580 PRK03449, PRK03449, putative inner membrane protein translocase
component YidC; Provisional.
Length = 304
Score = 24.6 bits (54), Expect = 7.1
Identities = 6/18 (33%), Positives = 13/18 (72%)
Query: 10 QKFMQDMMPKVKWLRENY 27
+ MQ++ P++K L++ Y
Sbjct: 58 TRKMQELQPQIKALQKKY 75
>gnl|CDD|172549 PRK14057, PRK14057, epimerase; Provisional.
Length = 254
Score = 24.3 bits (52), Expect = 9.3
Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 10/67 (14%)
Query: 1 MTVEPGFGGQKFMQDMMPKVKWL-------RENYPTLNIEVDGGVGPNTIDECAKAGANW 53
+ V PG+G + D+ +V L RE I +DG + + + G +
Sbjct: 161 LAVNPGYGSKMRSSDLHERVAQLLCLLGDKREGKI---IVIDGSLTQDQLPSLIAQGIDR 217
Query: 54 IVSGTAV 60
+VSG+A+
Sbjct: 218 VVSGSAL 224
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.316 0.134 0.411
Gapped
Lambda K H
0.267 0.0732 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 4,104,363
Number of extensions: 314192
Number of successful extensions: 489
Number of sequences better than 10.0: 1
Number of HSP's gapped: 481
Number of HSP's successfully gapped: 65
Length of query: 82
Length of database: 10,937,602
Length adjustment: 51
Effective length of query: 31
Effective length of database: 8,675,548
Effective search space: 268941988
Effective search space used: 268941988
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.2 bits)