RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11601
(82 letters)
>1tqx_A D-ribulose-5-phosphate 3-epimerase, putative; structural genomics,
protein structure initiative, PSI; 2.00A {Plasmodium
falciparum} SCOP: c.1.2.2
Length = 227
Score = 141 bits (359), Expect = 1e-44
Identities = 46/82 (56%), Positives = 57/82 (69%)
Query: 1 MTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAV 60
MTVEPGFGGQ FM DMM KV +LR+ Y LNI+VDGG+ T + A GAN IV+GT++
Sbjct: 145 MTVEPGFGGQSFMHDMMGKVSFLRKKYKNLNIQVDGGLNIETTEISASHGANIIVAGTSI 204
Query: 61 INCPDRIQAISTLKSSVQKYLS 82
N D I T++ SVQKYL+
Sbjct: 205 FNAEDPKYVIDTMRVSVQKYLN 226
>3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE;
1.70A {Homo sapiens} PDB: 3ovq_A* 3ovr_A* 3qc3_A
Length = 228
Score = 139 bits (352), Expect = 2e-43
Identities = 48/81 (59%), Positives = 63/81 (77%)
Query: 1 MTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAV 60
MTVEPGFGGQKFM+DMMPKV WLR +P+L+IEVDGGVGP+T+ +CA+AGAN IVSG+A+
Sbjct: 141 MTVEPGFGGQKFMEDMMPKVHWLRTQFPSLDIEVDGGVGPDTVHKCAEAGANMIVSGSAI 200
Query: 61 INCPDRIQAISTLKSSVQKYL 81
+ D I+ L++ +
Sbjct: 201 MRSEDPRSVINLLRNVCSEAA 221
>1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate
pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2
PDB: 1h1z_A
Length = 228
Score = 137 bits (348), Expect = 7e-43
Identities = 46/82 (56%), Positives = 62/82 (75%)
Query: 1 MTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAV 60
MTVEPGFGGQKFM +MM KV+ LR+ YP+L+IEVDGG+GP+TID A AGAN IV+G+++
Sbjct: 145 MTVEPGFGGQKFMPEMMEKVRALRKKYPSLDIEVDGGLGPSTIDVAASAGANCIVAGSSI 204
Query: 61 INCPDRIQAISTLKSSVQKYLS 82
+ + IS L+ SV+ +
Sbjct: 205 FGAAEPGEVISALRKSVEGSQN 226
>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc
genomics, center for structural genomics of infectious
DISE csgid; 2.05A {Francisella tularensis subsp}
Length = 246
Score = 105 bits (264), Expect = 4e-30
Identities = 32/84 (38%), Positives = 46/84 (54%), Gaps = 6/84 (7%)
Query: 1 MTVEPGFGGQKFMQDMMPKVKWLRE-----NYPTLNIEVDGGVGPNTIDECAKAGANWIV 55
M+V PGFGGQKF+ M+ K K + + + L +E+DGGV P I E A G N V
Sbjct: 163 MSVNPGFGGQKFIPAMLDKAKEISKWISSTDRDIL-LEIDGGVNPYNIAEIAVCGVNAFV 221
Query: 56 SGTAVINCPDRIQAISTLKSSVQK 79
+G+A+ N Q I ++ + K
Sbjct: 222 AGSAIFNSDSYKQTIDKMRDELNK 245
>2fli_A Ribulose-phosphate 3-epimerase; (beta/alpha)8-barrel, D- xylitol
5-phosphate, isomerase; HET: DX5; 1.80A {Streptococcus
pyogenes} SCOP: c.1.2.2
Length = 220
Score = 103 bits (260), Expect = 1e-29
Identities = 31/82 (37%), Positives = 46/82 (56%), Gaps = 6/82 (7%)
Query: 1 MTVEPGFGGQKFMQDMMPKVKWLRE-----NYPTLNIEVDGGVGPNTIDECAKAGANWIV 55
MTV PGFGGQ F+ + + KV + + IEVDGGV TI C +AGAN V
Sbjct: 138 MTVNPGFGGQAFIPECLEKVATVAKWRDEKGLSFD-IEVDGGVDNKTIRACYEAGANVFV 196
Query: 56 SGTAVINCPDRIQAISTLKSSV 77
+G+ + D + + TL++++
Sbjct: 197 AGSYLFKASDLVSQVQTLRTAL 218
>1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase,
isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2
Length = 230
Score = 103 bits (260), Expect = 1e-29
Identities = 36/82 (43%), Positives = 55/82 (67%), Gaps = 4/82 (4%)
Query: 1 MTVEPGFGGQKFMQDMMPKVKWLR----ENYPTLNIEVDGGVGPNTIDECAKAGANWIVS 56
M+V PGFGGQ F+ +++PK++ LR E IEVDGG+ PN + +AGAN IV+
Sbjct: 141 MSVNPGFGGQSFIPEVLPKIRALRQMCDERGLDPWIEVDGGLKPNNTWQVLEAGANAIVA 200
Query: 57 GTAVINCPDRIQAISTLKSSVQ 78
G+AV N P+ +AI+ +++S +
Sbjct: 201 GSAVFNAPNYAEAIAGVRNSKR 222
>1rpx_A Protein (ribulose-phosphate 3-epimerase); chloroplast, calvin
cycle, oxidative pentose PH pathway; 2.30A {Solanum
tuberosum} SCOP: c.1.2.2
Length = 230
Score = 103 bits (260), Expect = 1e-29
Identities = 36/82 (43%), Positives = 50/82 (60%), Gaps = 4/82 (4%)
Query: 1 MTVEPGFGGQKFMQDMMPKVKWLR----ENYPTLNIEVDGGVGPNTIDECAKAGANWIVS 56
M+V PGFGGQ F++ + K+ LR E IEVDGGVGP + +AGAN +V+
Sbjct: 147 MSVNPGFGGQSFIESQVKKISDLRKICAERGLNPWIEVDGGVGPKNAYKVIEAGANALVA 206
Query: 57 GTAVINCPDRIQAISTLKSSVQ 78
G+AV PD +AI +K+S +
Sbjct: 207 GSAVFGAPDYAEAIKGIKTSKR 228
>3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate,
(beta/alpha)8 barrel, carbohydrate metabolism,
isomerase; HET: S6P; 2.20A {Escherichia coli} PDB:
3ct7_A*
Length = 231
Score = 97.3 bits (243), Expect = 5e-27
Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 8/86 (9%)
Query: 1 MTVEPGFGGQKFMQDMMPKVKWLRE-----NYPTLNIEVDGGVGPNTIDECAKAGANWIV 55
MTV+PGF GQ F+ +M+ K+ L+ IEVDG T ++ AGA+ +
Sbjct: 135 MTVDPGFAGQPFIPEMLDKLAELKAWREREGLEYE-IEVDGSCNQATYEKLMAAGADVFI 193
Query: 56 SGTAVI-NCPDRI-QAISTLKSSVQK 79
GT+ + N + I +A + + +
Sbjct: 194 VGTSGLFNHAENIDEAWRIMTAQILA 219
>3cu2_A Ribulose-5-phosphate 3-epimerase; YP_718263.1, ribulose-PHOS
epimerase family, structural genomics, joint center for
STR genomics, JCSG; 1.91A {Haemophilus somnus}
Length = 237
Score = 92.3 bits (230), Expect = 4e-25
Identities = 15/83 (18%), Positives = 34/83 (40%), Gaps = 7/83 (8%)
Query: 1 MTVEPGFGGQKFMQDMMPKVKWLR----ENYPTLNIEVDGGVGPNTIDECAKAGAN--WI 54
+T++P G + + ++ +V + I +DG + + W+
Sbjct: 155 LTLDPRNGTKYPSELILDRVIQVEKRLGNRRVEKLINIDGSMTLELAKYFKQGTHQIDWL 214
Query: 55 VSGTAVINCPDRIQAISTLKSSV 77
VSG+A+ + + + KSS+
Sbjct: 215 VSGSALFS-GELKTNLKVWKSSI 236
>3exr_A RMPD (hexulose-6-phosphate synthase); beta barrel, lyase; 1.70A
{Streptococcus mutans} PDB: 3exs_A* 3ext_A
Length = 221
Score = 67.7 bits (165), Expect = 8e-16
Identities = 13/81 (16%), Positives = 30/81 (37%), Gaps = 2/81 (2%)
Query: 1 MTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAV 60
+ + G+ + + + KVK L E + V GG+ +T+ ++G +
Sbjct: 142 QSRDALLAGETWGEKDLNKVKKLIE--MGFRVSVTGGLSVDTLKLFEGVDVFTFIAGRGI 199
Query: 61 INCPDRIQAISTLKSSVQKYL 81
+ A K +++
Sbjct: 200 TEAKNPAGAARAFKDEIKRIW 220
>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase;
1.65A {Salmonella typhimurium}
Length = 211
Score = 64.5 bits (157), Expect = 1e-14
Identities = 13/80 (16%), Positives = 32/80 (40%)
Query: 1 MTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAV 60
+ V G Q + + + + + I V GG+ T+ + A G + ++ G+A+
Sbjct: 131 LAVHTGTDQQAAGRKPIDDLITMLKVRRKARIAVAGGISSQTVKDYALLGPDVVIVGSAI 190
Query: 61 INCPDRIQAISTLKSSVQKY 80
+ D + + ++
Sbjct: 191 THAADPAGEARKISQVLLQH 210
>3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A
{Mycobacterium gastri}
Length = 207
Score = 64.2 bits (156), Expect = 1e-14
Identities = 19/77 (24%), Positives = 30/77 (38%), Gaps = 1/77 (1%)
Query: 1 MTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAV 60
+ + G Q + + E + V GGV TI KAGA V+G A+
Sbjct: 131 VEMHAGLDEQAKPGFDLNGLLAAGEKAR-VPFSVAGGVKVATIPAVQKAGAEVAVAGGAI 189
Query: 61 INCPDRIQAISTLKSSV 77
D A L++++
Sbjct: 190 YGAADPAAAAKELRAAI 206
>1q6o_A Humps, 3-keto-L-gulonate 6-phosphate decarboxylase, D-; beta
barrel, lyase; HET: LG6; 1.20A {Escherichia coli} SCOP:
c.1.2.3 PDB: 1kw1_A* 1q6l_A* 1kv8_A* 1q6q_A* 1q6r_A*
1xbv_A* 1so5_A* 1so4_A* 1xby_A* 1so3_A* 1so6_A* 1xbz_A*
1xbx_A*
Length = 216
Score = 62.0 bits (150), Expect = 1e-13
Identities = 10/80 (12%), Positives = 30/80 (37%), Gaps = 2/80 (2%)
Query: 1 MTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAV 60
+ + G + + + +K L + + V GG+ + + ++G ++
Sbjct: 137 RSRDAQAAGVAWGEADITAIKRLSD--MGFKVTVTGGLALEDLPLFKGIPIHVFIAGRSI 194
Query: 61 INCPDRIQAISTLKSSVQKY 80
+ ++A K S+ +
Sbjct: 195 RDAASPVEAARQFKRSIAEL 214
>3jr2_A Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulonate-6-phosphate
decarboxylase, ULAD, niaid,CSG bound, biosynthetic
protein; HET: MSE; 1.80A {Vibrio cholerae} PDB: 3ieb_A*
Length = 218
Score = 57.7 bits (139), Expect = 5e-12
Identities = 11/69 (15%), Positives = 25/69 (36%), Gaps = 2/69 (2%)
Query: 1 MTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAV 60
+ + G + D + K++ L + + + GG+ P I ++G A+
Sbjct: 140 RSRDAELAGIGWTTDDLDKMRQLSAL--GIELSITGGIVPEDIYLFEGIKTKTFIAGRAL 197
Query: 61 INCPDRIQA 69
+ A
Sbjct: 198 AGAEGQQTA 206
>3vk5_A MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {Streptomyces
ghanaensis} PDB: 3vka_A* 3vkb_A* 3vkc_A* 3vkd_A*
Length = 286
Score = 40.2 bits (93), Expect = 2e-05
Identities = 11/69 (15%), Positives = 27/69 (39%), Gaps = 4/69 (5%)
Query: 15 DMMPKVKWLRENYPTLNIEVDGGV-GPNTIDECAKAGANWIVSGTAVINCPDRIQAISTL 73
+++ + + P + V G V + E +GA+++ A+ PD A++ +
Sbjct: 215 EVVRHFR--KGLGPDQVLFVSGNVRSGRQVTEYLDSGADYVGFAGALEQ-PDWRSALAEI 271
Query: 74 KSSVQKYLS 82
+
Sbjct: 272 AGRRPAAPA 280
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 35.0 bits (80), Expect = 0.001
Identities = 18/86 (20%), Positives = 35/86 (40%), Gaps = 19/86 (22%)
Query: 11 KFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDE-----CAKAGA--NWIVSGTAV-IN 62
MQ +P+ + R NY + I G V + E + G W+V V N
Sbjct: 1791 MTMQVAVPRDELGRSNYGMIAI-NPGRVAASFSQEALQYVVERVGKRTGWLVE--IVNYN 1847
Query: 63 CPDR-------IQAISTLKSSVQKYL 81
++ ++A+ T+ ++V ++
Sbjct: 1848 VENQQYVAAGDLRALDTV-TNVLNFI 1872
Score = 30.0 bits (67), Expect = 0.058
Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 10/41 (24%)
Query: 7 FGGQKFMQDMMPKVKWLRENYPTLNIE--VDGGVGPNTIDE 45
FGG+K K +RENY + E VDG + I +
Sbjct: 1676 FGGEK--------GKRIRENYSAMIFETIVDGKLKTEKIFK 1708
Score = 25.0 bits (54), Expect = 3.8
Identities = 8/27 (29%), Positives = 12/27 (44%), Gaps = 11/27 (40%)
Query: 7 FGGQ----KFMQDMMPKVKWLRENYPT 29
FGGQ + ++ LR+ Y T
Sbjct: 160 FGGQGNTDDYFEE-------LRDLYQT 179
>1yad_A Regulatory protein TENI; TIM barrel, transcription; 2.10A {Bacillus
subtilis} PDB: 3qh2_A*
Length = 221
Score = 33.0 bits (76), Expect = 0.004
Identities = 10/66 (15%), Positives = 31/66 (46%), Gaps = 5/66 (7%)
Query: 19 KVKWLRE--NYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINCPDRIQAISTLKSS 76
+ +++ + P + I GG+ P+ + + +AGA+ I + + + + ++A
Sbjct: 155 LLSDIKQRISIPVIAI---GGMTPDRLRDVKQAGADGIAVMSGIFSSAEPLEAARRYSRK 211
Query: 77 VQKYLS 82
+++
Sbjct: 212 LKEMRY 217
>1viz_A PCRB protein homolog; structural genomics, unknown function; 1.85A
{Bacillus subtilis} SCOP: c.1.4.1
Length = 240
Score = 31.6 bits (71), Expect = 0.014
Identities = 13/54 (24%), Positives = 19/54 (35%)
Query: 17 MPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINCPDRIQAI 70
+ VK + T + GG+ + A+ IV G AV DR
Sbjct: 170 IEAVKKTKAVLETSTLFYGGGIKDAETAKQYAEHADVIVVGNAVYEDFDRALKT 223
>1xi3_A Thiamine phosphate pyrophosphorylase; structural genomics,
southeast collaboratory for structural genomics,
hyperthermophIle; 1.70A {Pyrococcus furiosus} SCOP:
c.1.3.1
Length = 215
Score = 31.4 bits (72), Expect = 0.017
Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 5/64 (7%)
Query: 20 VKWLRE--NYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINCPDRIQAISTLKSSV 77
++ + E P + I GG+ + E K G + I +AV+ D +A L+ V
Sbjct: 154 LRKIVESVKIPVVAI---GGINKDNAREVLKTGVDGIAVISAVMGAEDVRKATEELRKIV 210
Query: 78 QKYL 81
++ L
Sbjct: 211 EEVL 214
>2czd_A Orotidine 5'-phosphate decarboxylase; pyrimidine biosynthesis,
orotidine 5'-phosphate decarboxylas (ompdecase),
structural genomics; 1.60A {Pyrococcus horikoshii} SCOP:
c.1.2.3 PDB: 2cz5_A 2cze_A* 2czf_A*
Length = 208
Score = 30.7 bits (70), Expect = 0.026
Identities = 12/44 (27%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 37 GVGP--NTIDECAKAGANWIVSGTAVINCPDRIQAISTLKSSVQ 78
G+G + KAGA++I+ G A+ N P+ +A + ++
Sbjct: 163 GIGAQGGKAKDAVKAGADYIIVGRAIYNAPNPREAAKAIYDEIR 206
>2b7n_A Probable nicotinate-nucleotide pyrophosphorylase; quinolinate
phosphoribosyltransferase, quinolinic acid, HELI pylori,
transferase; HET: NTM; 2.30A {Helicobacter pylori} PDB:
2b7p_A* 2b7q_A*
Length = 273
Score = 30.5 bits (70), Expect = 0.033
Identities = 10/47 (21%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
Query: 12 FMQDMMPK-VKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSG 57
+ + +YP + +E G + +I+ AK+G + I G
Sbjct: 211 LSVLETKEIAAYRDAHYPFVLLEASGNISLESINAYAKSGVDAISVG 257
>1qo2_A Molecule: N-((5-phosphoribosyl)-formimino)-5-aminoimidazol-
4-carboxamid ribonucleotid...; isomerase, histidine
biosynthesis; 1.85A {Thermotoga maritima} SCOP: c.1.2.1
PDB: 2cff_A 2w79_A
Length = 241
Score = 30.2 bits (69), Expect = 0.045
Identities = 7/44 (15%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 29 TLNIEVDGGV-GPNTIDECAKAGANWIVSGTAVINCPDRIQAIS 71
+I++ GG+ + ++ K G + + V+ P ++++
Sbjct: 73 AEHIQIGGGIRSLDYAEKLRKLGYRRQIVSSKVLEDPSFLKSLR 116
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.9 bits (66), Expect = 0.054
Identities = 5/13 (38%), Positives = 10/13 (76%)
Query: 68 QAISTLKSSVQKY 80
QA+ L++S++ Y
Sbjct: 20 QALKKLQASLKLY 32
>2tps_A Protein (thiamin phosphate synthase); thiamin biosynthesis, TIM
barrel; HET: TPS; 1.25A {Bacillus subtilis} SCOP:
c.1.3.1 PDB: 1g4t_A* 3o15_A* 1g6c_A* 1g4e_A* 1g69_A*
3o16_A 1g4s_A* 1g4p_A* 1g67_A*
Length = 227
Score = 29.5 bits (67), Expect = 0.065
Identities = 10/47 (21%), Positives = 20/47 (42%)
Query: 36 GGVGPNTIDECAKAGANWIVSGTAVINCPDRIQAISTLKSSVQKYLS 82
GG+ + +AGA+ + +A+ D A + +Q Y +
Sbjct: 179 GGITIDNAAPVIQAGADGVSMISAISQAEDPESAARKFREEIQTYKT 225
>1qpo_A Quinolinate acid phosphoribosyl transferase; type II prtase, de
novo NAD biosynthesis, PRPP, phosphoribos transferase;
2.40A {Mycobacterium tuberculosis H37RV} SCOP: c.1.17.1
d.41.2.1 PDB: 1qpn_A 1qpq_A* 1qpr_A*
Length = 284
Score = 29.0 bits (66), Expect = 0.11
Identities = 11/47 (23%), Positives = 19/47 (40%), Gaps = 1/47 (2%)
Query: 12 FMQDMMPK-VKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSG 57
F V+ PT+ +E GG+ T A+ G +++ G
Sbjct: 223 FAVWQTQTAVQRRDSRAPTVMLESSGGLSLQTAATYAETGVDYLAVG 269
>1o4u_A Type II quinolic acid phosphoribosyltransferase; structural
genomics, joint center for structural genomics, J
protein structure initiative; 2.50A {Thermotoga
maritima} SCOP: c.1.17.1 d.41.2.1
Length = 285
Score = 29.0 bits (66), Expect = 0.11
Identities = 7/43 (16%), Positives = 18/43 (41%)
Query: 15 DMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSG 57
++ + +++ P + +EV GG+ + + I S
Sbjct: 226 EVKDISRRIKDINPNVIVEVSGGITEENVSLYDFETVDVISSS 268
>2jbm_A Nicotinate-nucleotide pyrophosphorylase; NAD, enzyme, metabolism,
transferase, polymorphism, glycosyltransferase, pyridine
nucleotide biosynthesis; HET: SRT; 2.0A {Homo sapiens}
PDB: 3lar_A
Length = 299
Score = 29.1 bits (66), Expect = 0.12
Identities = 8/47 (17%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
Query: 12 FMQDMMPK-VKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSG 57
F + + L+ +P++ +E GG+ + + + + I G
Sbjct: 226 FKPEELHPTATVLKAQFPSVAVEASGGITLDNLPQFCGPHIDVISMG 272
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 28.3 bits (62), Expect = 0.22
Identities = 14/86 (16%), Positives = 27/86 (31%), Gaps = 22/86 (25%)
Query: 8 GGQKFMQDMMPKVK-------WLRENYPTLNIEVDG--GVG----------PNTIDECAK 48
Q F + + +++ L E P N+ +DG G G +
Sbjct: 122 DNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMD 181
Query: 49 AGANWIVSGTAVINCPD-RIQAISTL 73
W+ N P+ ++ + L
Sbjct: 182 FKIFWLNLKN--CNSPETVLEMLQKL 205
>3ceu_A Thiamine phosphate pyrophosphorylase; TIM barrel-like protein,
structural genomics, PSI-2, protein structure
initiative; 2.30A {Bacteroides thetaiotaomicron
vpi-5482}
Length = 210
Score = 27.7 bits (62), Expect = 0.37
Identities = 7/30 (23%), Positives = 11/30 (36%)
Query: 36 GGVGPNTIDECAKAGANWIVSGTAVINCPD 65
GG+ + + E G V + N D
Sbjct: 151 GGINEDNLLEIKDFGFGGAVVLGDLWNKFD 180
>3o63_A Probable thiamine-phosphate pyrophosphorylase; thiamin
biosynthesis, TIM barrel, transferase; 2.35A
{Mycobacterium tuberculosis}
Length = 243
Score = 27.3 bits (61), Expect = 0.49
Identities = 12/44 (27%), Positives = 19/44 (43%)
Query: 36 GGVGPNTIDECAKAGANWIVSGTAVINCPDRIQAISTLKSSVQK 79
GG+ + AGA IV A+ + D A L+S++
Sbjct: 198 GGINAQRLPAVLDAGARRIVVVRAITSADDPRAAAEQLRSALTA 241
>2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis,
TIM-barrel, His biosynthesis, tryptophan biosynthesis;
HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A
2y85_A*
Length = 244
Score = 26.8 bits (60), Expect = 0.69
Identities = 8/42 (19%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 30 LNIEVDGGV-GPNTIDECAKAGANWIVSGTAVINCPDRIQAI 70
+ +E+ GG+ ++ G + GTA + P +
Sbjct: 75 VQVELSGGIRDDESLAAALATGCARVNVGTAALENPQWCARV 116
>2nr7_A Secretion activator protein, putative; APCC85792, porphyromonas
gingivalis W83 structural genomics, PSI-2, protein
structure initiative; 1.30A {Porphyromonas gingivalis}
SCOP: d.2.1.9
Length = 195
Score = 26.7 bits (58), Expect = 0.69
Identities = 10/55 (18%), Positives = 16/55 (29%), Gaps = 13/55 (23%)
Query: 1 MTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIV 55
G G Q + L ++ DG VG T+ A + +
Sbjct: 97 WVWGSGKYGIVIPQRI-------------LGVQADGIVGNKTLQAVNSADPDELF 138
>3m47_A Orotidine 5'-phosphate decarboxylase; orotidine 5'-monophosphate
decarboxylase, mutant I218A, LYAS; 1.20A
{Methanothermobacter thermautotrophicusdelta H} PDB:
3li1_A 3m5z_A 3lty_A 3ltp_A* 3g18_A* 3g1d_A* 3g1f_A*
3g1h_A* 3g1a_A* 3lv6_A* 1klz_A* 3g1y_A 3g22_A* 3g24_A*
3p5z_A* 3siz_A* 3sy5_A* 1loq_A* 1lor_A* 1kly_A* ...
Length = 228
Score = 26.4 bits (59), Expect = 0.83
Identities = 13/64 (20%), Positives = 25/64 (39%), Gaps = 1/64 (1%)
Query: 20 VKWLRENYPTLNIEVDGGVGPNTID-ECAKAGANWIVSGTAVINCPDRIQAISTLKSSVQ 78
+ LRE + + GVG D A+ I+ G ++ + A + S++
Sbjct: 164 LSRLREIIGQDSFLISPGVGAQGGDPGETLRFADAIIVGRSIYLADNPAAAAAGAIESIK 223
Query: 79 KYLS 82
L+
Sbjct: 224 DLLN 227
>2yw3_A 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deoxyphosphogluconate
aldolase; structural genomics, NPPSFA; 1.67A {Thermus
thermophilus} PDB: 2yw4_A
Length = 207
Score = 26.4 bits (58), Expect = 0.87
Identities = 7/43 (16%), Positives = 16/43 (37%)
Query: 20 VKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVIN 62
++ E +P + GG+ + A V G+ ++
Sbjct: 142 LRAYAEVFPEVRFLPTGGIKEEHLPHYAALPNLLAVGGSWLLQ 184
>3b0p_A TRNA-dihydrouridine synthase; TIM barrel, oxidoreductase; HET: FMN;
1.70A {Thermus thermophilus} PDB: 3b0u_X* 3b0v_C*
Length = 350
Score = 26.4 bits (59), Expect = 0.95
Identities = 7/32 (21%), Positives = 15/32 (46%), Gaps = 2/32 (6%)
Query: 18 PKVKWLRENYPTLNIEVDGGVGPNTIDECAKA 49
V L+ ++P L +GG+ +++E
Sbjct: 186 DWVHRLKGDFPQLTFVTNGGI--RSLEEALFH 215
>1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function;
HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1
Length = 224
Score = 26.3 bits (58), Expect = 1.1
Identities = 15/64 (23%), Positives = 22/64 (34%), Gaps = 8/64 (12%)
Query: 6 GFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINCPD 65
GG K + K L Y L I GG+G + I + G+ +
Sbjct: 141 ASGGVKMI-------KALLGPYAQLQIMPTGGIGLHNIRDYLAIPNIVACGGSWFVE-KK 192
Query: 66 RIQA 69
IQ+
Sbjct: 193 LIQS 196
>1wbh_A KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} SCOP: c.1.10.1
PDB: 2c0a_A 1wau_A 1eua_A 1eun_A 1fq0_A* 1fwr_A*
Length = 214
Score = 26.3 bits (58), Expect = 1.2
Identities = 6/50 (12%), Positives = 20/50 (40%), Gaps = 1/50 (2%)
Query: 20 VKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINCPDRIQA 69
++ + + + GG+ P + + + G+ ++ D ++A
Sbjct: 147 LQAIAGPFSQVRFCPTGGISPANYRDYLALKSVLCIGGSWLVP-ADALEA 195
>1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan
biosynthesis; 1.8A {Streptomyces coelicolor} SCOP:
c.1.2.1 PDB: 2vep_A 2x30_A
Length = 244
Score = 26.0 bits (58), Expect = 1.2
Identities = 9/42 (21%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 30 LNIEVDGGV-GPNTIDECAKAGANWIVSGTAVINCPDRIQAI 70
+ +E+ GG+ +T+ G + GTA + P+ + +
Sbjct: 76 IKVELSGGIRDDDTLAAALATGCTRVNLGTAALETPEWVAKV 117
>3f1x_A Serine acetyltransferase; NESG X-RAY BVR62 A6KZB9 A6KZB9_BACV8,
structural genomics, P protein structure initiative;
2.00A {Bacteroides vulgatus atcc 8482}
Length = 310
Score = 26.3 bits (58), Expect = 1.2
Identities = 8/35 (22%), Positives = 17/35 (48%), Gaps = 5/35 (14%)
Query: 39 GPNTIDECAKAGAN-WIV----SGTAVINCPDRIQ 68
G TI + A G N W+ +G+ ++ ++ +
Sbjct: 268 GRVTIGKGATVGGNIWVTENVPAGSRIVQRKNKDE 302
>1szo_A 6-oxocamphor hydrolase; enzyme-product complex; HET: CAX; 1.90A
{Rhodococcus SP} SCOP: c.14.1.3 PDB: 1o8u_A
Length = 257
Score = 26.0 bits (58), Expect = 1.5
Identities = 8/32 (25%), Positives = 15/32 (46%)
Query: 13 MQDMMPKVKWLRENYPTLNIEVDGGVGPNTID 44
M+ + + + Y + +E DGGV T+
Sbjct: 1 MKQLATPFQEYSQKYENIRLERDGGVLLVTVH 32
>3ven_A O-carbamoyltransferase TOBZ; antibiotic biosynthesis, substrate
assisted catalysis, subst channeling, adenylation; HET:
TLA; 1.57A {Streptoalloteichus tenebrarius} PDB: 3veo_A
3ves_A* 3vet_A* 3vew_A* 3ver_A* 3vf4_A* 3vf2_A* 3vex_A*
3vez_A*
Length = 576
Score = 26.0 bits (57), Expect = 1.5
Identities = 7/35 (20%), Positives = 12/35 (34%), Gaps = 1/35 (2%)
Query: 10 QKFMQDMMPK-VKWLRENYPTLNIEVDGGVGPNTI 43
Q ++ + + + V GGVG N
Sbjct: 288 QAALERAVFGLADSVLARTGERTLFVAGGVGLNAT 322
>4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase;
1.64A {Vibrionales bacterium swat-3}
Length = 232
Score = 26.0 bits (57), Expect = 1.6
Identities = 11/67 (16%), Positives = 22/67 (32%), Gaps = 14/67 (20%)
Query: 6 GFGGQKFMQDM---MPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVIN 62
GG ++ + ++ PT GG+ P+ ID GT +++
Sbjct: 158 ASGGISMVKSLVGPYGDIRL----MPT------GGITPSNIDNYLAIPQVLACGGTWMVD 207
Query: 63 CPDRIQA 69
+
Sbjct: 208 -KKLVTN 213
>2dpl_A GMP synthetase, GMP synthase [glutamine-hydrolyzing] subunit B;
pyrococcus horikoshii OT3, structural genomics, NPPSFA;
1.43A {Pyrococcus horikoshii} PDB: 2z0c_A 3a4i_A
Length = 308
Score = 25.9 bits (58), Expect = 1.6
Identities = 10/32 (31%), Positives = 17/32 (53%), Gaps = 3/32 (9%)
Query: 44 DECAKAGANWIVSGTAVINCPDRIQAISTLKS 75
+ K GA +++ GT PD I++ +KS
Sbjct: 114 EVAKKIGAEYLIQGTIA---PDWIESQGKIKS 142
>1x1o_A Nicotinate-nucleotide pyrophosphorylase; transferase, structural
genomics, NPPSFA, national project O structural and
functional analyses; 1.90A {Thermus thermophilus}
Length = 286
Score = 25.5 bits (57), Expect = 1.9
Identities = 6/26 (23%), Positives = 12/26 (46%)
Query: 32 IEVDGGVGPNTIDECAKAGANWIVSG 57
+E G + A+AG +++ G
Sbjct: 243 LEASGNMTLERAKAAAEAGVDYVSVG 268
>2q22_A Uncharacterized protein; YP_323524.1, structural genomics, J
center for structural genomics, JCSG, protein structure
INI PSI-2; HET: PG4; 2.11A {Anabaena variabilis atcc
29413} SCOP: d.365.1.1
Length = 139
Score = 25.3 bits (55), Expect = 2.3
Identities = 3/32 (9%), Positives = 11/32 (34%), Gaps = 3/32 (9%)
Query: 49 AGANWIVSGTAVINCPDRIQAISTLKSSVQKY 80
+++ + G I + + +K+
Sbjct: 48 KLSDYQILG---ICADTADEGLLAMKTYSHAL 76
>3c2e_A Nicotinate-nucleotide pyrophosphorylase; qprtase, prtase, BNA6,
mechanism, cytoplasm, glycosyltransferase, nucleus;
1.90A {Saccharomyces cerevisiae} PDB: 3c2f_A* 3c2o_A*
3c2v_A* 3c2r_A*
Length = 294
Score = 25.2 bits (56), Expect = 2.6
Identities = 4/26 (15%), Positives = 11/26 (42%)
Query: 32 IEVDGGVGPNTIDECAKAGANWIVSG 57
+E GG+ + ++E + +
Sbjct: 252 LECSGGLNLDNLEEYLCDDIDIYSTS 277
>3ru6_A Orotidine 5'-phosphate decarboxylase; structural genomics, center
for structural genomics of infec diseases (csgid),
TIM-barrel; 1.80A {Campylobacter jejuni subsp}
Length = 303
Score = 25.0 bits (55), Expect = 2.8
Identities = 3/32 (9%), Positives = 13/32 (40%)
Query: 48 KAGANWIVSGTAVINCPDRIQAISTLKSSVQK 79
+ +++IV G + + + + + +
Sbjct: 221 ENLSDYIVVGRPIYKNENPRAVCEKILNKIHR 252
>3tqv_A Nicotinate-nucleotide pyrophosphorylase; glycosyltransferase,
transferase; 2.62A {Francisella tularensis subsp}
Length = 287
Score = 25.1 bits (56), Expect = 3.0
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 32 IEVDGGVGPNTIDECAKAGANWIVSG 57
+EV G + N+I AK G ++I G
Sbjct: 245 LEVSGNIDRNSIVAIAKTGVDFISVG 270
>3jvp_A Ribulokinase; PSI-II, NYSGXRC, ribulose kinase, sugar kinase,
crsytal structure, structural genomics, protein
structure initiative; HET: 5RP; 2.31A {Bacillus
halodurans} PDB: 3qdk_A*
Length = 572
Score = 25.0 bits (55), Expect = 3.1
Identities = 5/21 (23%), Positives = 10/21 (47%)
Query: 8 GGQKFMQDMMPKVKWLRENYP 28
GG+ + M+ KV + +
Sbjct: 154 GGKISSEWMIAKVWQILDEAE 174
>1vqt_A Orotidine 5'-phosphate decarboxylase; TM0332, structural GEN joint
center for structural genomics, JCSG, protein structu
initiative, PSI; 2.00A {Thermotoga maritima} SCOP:
c.1.2.3
Length = 213
Score = 24.8 bits (55), Expect = 3.2
Identities = 6/24 (25%), Positives = 10/24 (41%)
Query: 47 AKAGANWIVSGTAVINCPDRIQAI 70
K AN+ V G + + + I
Sbjct: 182 MKGIANFAVLGREIYLSENPREKI 205
>3paj_A Nicotinate-nucleotide pyrophosphorylase, carboxyl; TIM barrel,
pyridin dicarboxylate, 5-phospho-alpha-D-ribose
1-diphosphate; 2.00A {Vibrio cholerae o1 biovar el tor}
Length = 320
Score = 24.9 bits (55), Expect = 3.2
Identities = 8/26 (30%), Positives = 15/26 (57%)
Query: 32 IEVDGGVGPNTIDECAKAGANWIVSG 57
+E G + + + ECA+ G ++I G
Sbjct: 278 LENSGNITLDNLKECAETGVDYISVG 303
>3l0g_A Nicotinate-nucleotide pyrophosphorylase; ssgcid, NIH, niaid, SBRI,
UW, emerald biostructures, ALS collaborative
crystallography; 2.05A {Ehrlichia chaffeensis}
Length = 300
Score = 24.8 bits (55), Expect = 3.6
Identities = 8/26 (30%), Positives = 12/26 (46%)
Query: 32 IEVDGGVGPNTIDECAKAGANWIVSG 57
+EV G V + A G ++I G
Sbjct: 254 LEVSGCVNIRNVRNIALTGVDYISIG 279
>1qap_A Quinolinic acid phosphoribosyltransferase; glycosyltransferase, NAD
biosynthesis; HET: NTM; 2.80A {Salmonella typhimurium}
SCOP: c.1.17.1 d.41.2.1
Length = 296
Score = 24.8 bits (55), Expect = 3.6
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 32 IEVDGGVGPNTIDECAKAGANWIVSG 57
+EV G V T+ E A+ G ++I G
Sbjct: 255 LEVSGNVTAETLREFAETGVDFISVG 280
>1eix_A Orotidine 5'-monophosphate decarboxylase; alpha-beta-barrel,
protein-inhibitor complex, homodimer, lyase; HET: BMQ;
2.50A {Escherichia coli} SCOP: c.1.2.3 PDB: 1jjk_A*
1l2u_A
Length = 245
Score = 24.9 bits (55), Expect = 3.8
Identities = 9/32 (28%), Positives = 17/32 (53%)
Query: 48 KAGANWIVSGTAVINCPDRIQAISTLKSSVQK 79
AG +++V G V D Q + + +S+Q+
Sbjct: 212 SAGVDYMVIGRPVTQSVDPAQTLKAINASLQR 243
>3gnn_A Nicotinate-nucleotide pyrophosphorylase; decode biostructures,
ssgcid, niaid, SBRI, UWPPG, glycosyltransferase,
transferase, structural genomics; 2.25A {Burkholderia
pseudomallei}
Length = 298
Score = 24.8 bits (55), Expect = 4.1
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 32 IEVDGGVGPNTIDECAKAGANWIVSG 57
+EV GGV +T+ A+ G + I G
Sbjct: 256 LEVSGGVNFDTVRAIAETGVDRISIG 281
>3ll3_A Gluconate kinase; xylulose kinase, nysgx, ATP, ADP, xylulose,
transferase, structural genomics, PSI-2, protein
structure initiative; HET: ATP DXP XUL ADP; 2.00A
{Lactobacillus acidophilus} PDB: 3gbt_A*
Length = 504
Score = 24.9 bits (55), Expect = 4.1
Identities = 4/26 (15%), Positives = 7/26 (26%), Gaps = 8/26 (30%)
Query: 3 VEPGFGGQKFMQDMMPKVKWLRENYP 28
+ P K+ WL+
Sbjct: 128 MHPMAPI--------YKLLWLKNKKT 145
>3l0q_A Xylulose kinase; xlylulose kinase, SGX, PSI, structural genomics,
protein structure initiative; HET: MSE XUL EPE; 1.61A
{Yersinia pseudotuberculosis} PDB: 3gg4_A*
Length = 554
Score = 24.6 bits (54), Expect = 4.5
Identities = 5/13 (38%), Positives = 9/13 (69%)
Query: 16 MMPKVKWLRENYP 28
PK+ WL+++ P
Sbjct: 143 QTPKLLWLKQHMP 155
>3lab_A Putative KDPG (2-keto-3-deoxy-6-phosphogluconate) aldolase; unknown
function, aldolase superfamily, class I aldolase, KDPG
aldolase domain; 1.84A {Oleispira antarctica} PDB:
3vcr_A
Length = 217
Score = 24.4 bits (53), Expect = 4.5
Identities = 9/64 (14%), Positives = 17/64 (26%), Gaps = 11/64 (17%)
Query: 6 GFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINCPD 65
G K P +++ PT GG+ + E G+ +
Sbjct: 146 GAKLLKAWSGPFPDIQF----CPT------GGISKDNYKEYLGLPNVICAGGSWLTE-SK 194
Query: 66 RIQA 69
+
Sbjct: 195 LLIE 198
>3tr2_A Orotidine 5'-phosphate decarboxylase; purines, pyrimidines,
nucleosides, nucleotides, lyase; 2.00A {Coxiella
burnetii}
Length = 239
Score = 24.0 bits (53), Expect = 6.0
Identities = 6/31 (19%), Positives = 18/31 (58%)
Query: 48 KAGANWIVSGTAVINCPDRIQAISTLKSSVQ 78
+AG++++V G + D ++A+ + ++
Sbjct: 207 QAGSDYLVIGRPITQSTDPLKALEAIDKDIK 237
>2gx8_A NIF3-related protein; structural genomics, unknown function,
protein structure initiative, midwest center for
structural genomics, MCSG; HET: EPE; 2.20A {Bacillus
cereus} SCOP: c.135.1.1
Length = 397
Score = 24.3 bits (52), Expect = 6.2
Identities = 6/17 (35%), Positives = 10/17 (58%)
Query: 40 PNTIDECAKAGANWIVS 56
+DE + GAN I++
Sbjct: 75 EEVVDEAIQLGANVIIA 91
>1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase;
1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A
Length = 205
Score = 24.0 bits (52), Expect = 6.4
Identities = 12/43 (27%), Positives = 22/43 (51%)
Query: 20 VKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVIN 62
VK ++ +P + GGV + + E KAG + G+A++
Sbjct: 141 VKAMKGPFPNVKFVPTGGVNLDNVCEWFKAGVLAVGVGSALVK 183
>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination,
NAD, zinc, inhibition, acetylation, metal-binding; HET:
NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB:
1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A*
1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A
1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...
Length = 374
Score = 24.1 bits (53), Expect = 7.1
Identities = 10/20 (50%), Positives = 12/20 (60%)
Query: 36 GGVGPNTIDECAKAGANWIV 55
GGVG + I C AGA I+
Sbjct: 201 GGVGLSVIMGCKAAGAARII 220
>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione
reductase, glutathione-dependent formaldehyde
dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo
sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A*
2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*
Length = 373
Score = 23.7 bits (52), Expect = 8.2
Identities = 10/20 (50%), Positives = 12/20 (60%)
Query: 36 GGVGPNTIDECAKAGANWIV 55
GGVG I C AGA+ I+
Sbjct: 200 GGVGLAVIMGCKVAGASRII 219
>1dbt_A Orotidine 5'-phosphate decarboxylase; UMP, TIM barrel, lyase; HET:
U5P; 2.40A {Bacillus subtilis} SCOP: c.1.2.3
Length = 239
Score = 23.7 bits (52), Expect = 8.2
Identities = 7/35 (20%), Positives = 17/35 (48%)
Query: 48 KAGANWIVSGTAVINCPDRIQAISTLKSSVQKYLS 82
+ G++ IV G ++ D ++A ++ + S
Sbjct: 205 EKGSSAIVVGRSITKAEDPVKAYKAVRLEWEGIKS 239
>3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 1.94A {Legionella pneumophila subsp}
Length = 361
Score = 23.8 bits (52), Expect = 9.0
Identities = 14/68 (20%), Positives = 22/68 (32%), Gaps = 22/68 (32%)
Query: 19 KVKWLRENYPTLNIEVDGGVG-PNTIDECAKAGANW--------------IVSG------ 57
+K LR+ + I + G V D A GA+ I +G
Sbjct: 131 TLKSLRQLLGSRCI-MAGNVATYAGADYLASCGADIIKAGIGGGSVCSTRIKTGFGVPML 189
Query: 58 TAVINCPD 65
T + +C
Sbjct: 190 TCIQDCSR 197
>2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase
reductase, NADPH, dihydroquercetin, rossmann fold,
oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera}
PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A*
Length = 337
Score = 23.7 bits (52), Expect = 9.1
Identities = 9/20 (45%), Positives = 11/20 (55%), Gaps = 3/20 (15%)
Query: 13 MQDMMPKVKWLRENYPTLNI 32
+ D+ K LRE YP NI
Sbjct: 260 ILDL---AKMLREKYPEYNI 276
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.134 0.411
Gapped
Lambda K H
0.267 0.0623 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,288,901
Number of extensions: 64505
Number of successful extensions: 331
Number of sequences better than 10.0: 1
Number of HSP's gapped: 321
Number of HSP's successfully gapped: 77
Length of query: 82
Length of database: 6,701,793
Length adjustment: 51
Effective length of query: 31
Effective length of database: 5,277,822
Effective search space: 163612482
Effective search space used: 163612482
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.6 bits)