Query psy11602
Match_columns 1083
No_of_seqs 703 out of 3415
Neff 6.1
Searched_HMMs 46136
Date Fri Aug 16 22:52:03 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11602.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11602hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2509|consensus 100.0 2.1E-71 4.6E-76 617.9 7.5 258 190-474 179-450 (455)
2 KOG0957|consensus 100.0 6.8E-70 1.5E-74 602.9 13.7 351 693-1083 121-590 (707)
3 PLN02678 seryl-tRNA synthetase 100.0 1.3E-63 2.8E-68 578.8 13.4 245 190-454 168-426 (448)
4 COG0172 SerS Seryl-tRNA synthe 100.0 1.9E-63 4E-68 567.0 9.7 240 191-454 169-421 (429)
5 PLN02320 seryl-tRNA synthetase 100.0 1.8E-61 4E-66 562.6 13.4 243 191-454 228-493 (502)
6 KOG2509|consensus 100.0 1.8E-55 4E-60 490.5 9.4 203 19-228 239-450 (455)
7 PRK05431 seryl-tRNA synthetase 100.0 1.1E-51 2.5E-56 481.3 8.2 240 192-454 166-418 (425)
8 PLN02678 seryl-tRNA synthetase 100.0 3.1E-50 6.7E-55 467.2 14.9 191 18-208 227-426 (448)
9 COG0172 SerS Seryl-tRNA synthe 100.0 6E-49 1.3E-53 448.3 14.7 189 18-208 225-421 (429)
10 PLN02320 seryl-tRNA synthetase 100.0 6.8E-49 1.5E-53 457.5 12.8 189 18-208 285-493 (502)
11 TIGR00414 serS seryl-tRNA synt 100.0 3.4E-49 7.3E-54 459.7 7.4 237 192-452 169-418 (418)
12 PRK05431 seryl-tRNA synthetase 100.0 1.9E-47 4.1E-52 445.9 13.0 189 18-208 222-418 (425)
13 TIGR00414 serS seryl-tRNA synt 100.0 1.5E-45 3.3E-50 429.1 12.1 187 18-206 224-418 (418)
14 cd00770 SerRS_core Seryl-tRNA 100.0 5.1E-44 1.1E-48 400.4 10.8 236 193-452 49-297 (297)
15 cd00770 SerRS_core Seryl-tRNA 100.0 5.8E-43 1.3E-47 391.9 15.0 186 19-206 104-297 (297)
16 TIGR00409 proS_fam_II prolyl-t 100.0 8.9E-40 1.9E-44 393.1 21.1 330 13-452 96-475 (568)
17 COG0442 ProS Prolyl-tRNA synth 100.0 6.4E-39 1.4E-43 374.6 16.9 307 13-453 96-409 (500)
18 cd00779 ProRS_core_prok Prolyl 100.0 9.2E-38 2E-42 343.0 12.1 170 14-189 81-255 (255)
19 PRK09194 prolyl-tRNA synthetas 100.0 1E-36 2.2E-41 368.7 19.6 328 13-452 96-470 (565)
20 PRK00960 seryl-tRNA synthetase 100.0 3.9E-37 8.5E-42 361.4 12.4 230 195-454 222-506 (517)
21 KOG2324|consensus 100.0 8.1E-37 1.8E-41 332.0 8.1 185 13-206 101-330 (457)
22 cd00772 ProRS_core Prolyl-tRNA 100.0 6.9E-36 1.5E-40 329.5 15.0 165 19-189 92-264 (264)
23 KOG0954|consensus 100.0 9.1E-36 2E-40 344.9 7.3 238 687-987 267-518 (893)
24 cd00779 ProRS_core_prok Prolyl 100.0 3.2E-35 6.9E-40 322.9 8.1 215 195-435 30-255 (255)
25 cd00778 ProRS_core_arch_euk Pr 100.0 2.9E-34 6.2E-39 316.4 11.6 164 18-188 91-260 (261)
26 cd00772 ProRS_core Prolyl-tRNA 100.0 1.1E-33 2.5E-38 311.9 8.7 210 200-435 36-264 (264)
27 PRK08661 prolyl-tRNA synthetas 100.0 4.1E-33 9E-38 330.6 12.4 181 18-206 103-289 (477)
28 KOG0956|consensus 100.0 2.4E-33 5.2E-38 322.0 9.9 146 691-887 5-157 (900)
29 PRK00960 seryl-tRNA synthetase 100.0 6.9E-33 1.5E-37 325.7 11.1 186 16-208 305-506 (517)
30 TIGR00408 proS_fam_I prolyl-tR 100.0 3E-32 6.4E-37 322.7 15.5 182 18-206 97-284 (472)
31 cd00778 ProRS_core_arch_euk Pr 100.0 7.7E-32 1.7E-36 297.1 7.6 214 194-434 30-260 (261)
32 KOG0955|consensus 100.0 1.4E-29 3.1E-34 312.7 6.9 170 686-909 214-396 (1051)
33 COG5141 PHD zinc finger-contai 100.0 9.2E-30 2E-34 283.8 4.7 140 690-884 192-333 (669)
34 PRK12325 prolyl-tRNA synthetas 99.9 5.1E-28 1.1E-32 284.9 12.7 189 13-206 96-347 (439)
35 TIGR00415 serS_MJ seryl-tRNA s 99.9 6.7E-27 1.4E-31 271.3 14.0 183 19-208 308-506 (520)
36 KOG4163|consensus 99.9 5.6E-28 1.2E-32 267.9 4.3 232 1-268 148-387 (551)
37 PRK08661 prolyl-tRNA synthetas 99.9 9.4E-25 2E-29 259.5 13.4 230 195-452 43-289 (477)
38 TIGR00415 serS_MJ seryl-tRNA s 99.9 8.9E-25 1.9E-29 253.7 7.9 231 194-454 221-506 (520)
39 PRK03991 threonyl-tRNA synthet 99.9 8.3E-24 1.8E-28 256.5 16.0 183 18-206 280-501 (613)
40 PF00587 tRNA-synt_2b: tRNA sy 99.9 2.7E-23 5.8E-28 215.5 11.8 122 14-141 50-173 (173)
41 TIGR00408 proS_fam_I prolyl-tR 99.9 1.3E-23 2.8E-28 249.3 10.2 226 200-452 42-284 (472)
42 KOG1244|consensus 99.9 2.4E-23 5.1E-28 219.2 5.2 107 623-750 219-330 (336)
43 cd00670 Gly_His_Pro_Ser_Thr_tR 99.9 3.7E-22 8E-27 215.9 13.0 164 18-187 60-235 (235)
44 cd00771 ThrRS_core Threonyl-tR 99.8 3.7E-21 8E-26 216.3 13.3 178 17-204 82-298 (298)
45 PLN02837 threonine-tRNA ligase 99.8 2.5E-21 5.3E-26 236.6 11.7 182 14-206 297-518 (614)
46 PRK03991 threonyl-tRNA synthet 99.8 5.4E-19 1.2E-23 214.8 13.4 230 194-451 225-500 (613)
47 cd00670 Gly_His_Pro_Ser_Thr_tR 99.8 1.5E-19 3.3E-24 195.5 6.5 207 200-433 6-235 (235)
48 cd00771 ThrRS_core Threonyl-tR 99.8 2.7E-20 5.7E-25 209.4 -0.8 224 194-450 28-298 (298)
49 PRK12444 threonyl-tRNA synthet 99.8 1.8E-18 3.9E-23 213.3 11.5 185 12-206 321-543 (639)
50 PRK04173 glycyl-tRNA synthetas 99.7 2.2E-18 4.7E-23 203.8 10.3 184 17-206 156-365 (456)
51 PF13832 zf-HC5HC2H_2: PHD-zin 99.7 1.1E-17 2.4E-22 161.3 3.9 81 803-888 9-89 (110)
52 TIGR00418 thrS threonyl-tRNA s 99.7 1E-16 2.3E-21 195.2 13.2 183 13-206 249-472 (563)
53 PF00587 tRNA-synt_2b: tRNA sy 99.7 6.6E-17 1.4E-21 167.8 8.5 155 201-378 4-173 (173)
54 PLN02837 threonine-tRNA ligase 99.7 1E-16 2.2E-21 196.3 11.4 226 194-451 245-517 (614)
55 PRK12325 prolyl-tRNA synthetas 99.6 7.9E-16 1.7E-20 181.9 11.6 230 195-451 46-346 (439)
56 PRK14799 thrS threonyl-tRNA sy 99.6 5.9E-16 1.3E-20 186.0 9.5 180 15-206 218-440 (545)
57 PRK12305 thrS threonyl-tRNA sy 99.5 1.5E-15 3.2E-20 185.6 3.5 183 13-206 255-478 (575)
58 PLN02908 threonyl-tRNA synthet 99.5 8.9E-15 1.9E-19 181.5 8.2 181 16-206 372-591 (686)
59 PRK09194 prolyl-tRNA synthetas 99.5 1.3E-14 2.9E-19 176.6 7.8 171 198-396 49-232 (565)
60 PRK04173 glycyl-tRNA synthetas 99.5 3.3E-14 7.1E-19 168.6 8.7 167 282-452 178-365 (456)
61 TIGR00409 proS_fam_II prolyl-t 99.5 4.5E-14 9.8E-19 171.2 7.6 197 196-421 47-260 (568)
62 cd00774 GlyRS-like_core Glycyl 99.4 2.2E-13 4.7E-18 150.3 2.4 135 15-157 75-213 (254)
63 PRK14799 thrS threonyl-tRNA sy 99.3 1.7E-12 3.6E-17 156.4 9.2 221 198-451 170-439 (545)
64 PRK00413 thrS threonyl-tRNA sy 99.3 5.6E-12 1.2E-16 156.2 13.9 181 14-206 320-541 (638)
65 PRK12444 threonyl-tRNA synthet 99.3 4.8E-12 1E-16 156.6 6.8 221 200-451 278-542 (639)
66 KOG1080|consensus 99.2 1.3E-11 2.9E-16 154.6 8.4 116 690-855 572-688 (1005)
67 TIGR00418 thrS threonyl-tRNA s 99.2 2.2E-11 4.8E-16 148.8 8.0 219 200-450 204-470 (563)
68 cd00768 class_II_aaRS-like_cor 99.2 2E-10 4.4E-15 121.3 14.1 158 14-182 46-211 (211)
69 KOG2324|consensus 99.2 3.8E-11 8.2E-16 132.7 8.4 164 284-452 130-330 (457)
70 PLN02908 threonyl-tRNA synthet 99.2 3.9E-11 8.4E-16 149.3 7.8 225 195-451 320-590 (686)
71 PRK12305 thrS threonyl-tRNA sy 99.1 1.8E-11 3.8E-16 150.0 3.4 218 200-451 210-477 (575)
72 COG0442 ProS Prolyl-tRNA synth 99.1 7E-11 1.5E-15 139.8 4.9 162 283-452 123-287 (500)
73 KOG1512|consensus 99.1 5.5E-11 1.2E-15 127.1 2.6 98 632-750 260-363 (381)
74 KOG0957|consensus 99.0 6.6E-11 1.4E-15 134.2 -1.4 71 547-629 240-310 (707)
75 PRK07080 hypothetical protein; 98.9 2.4E-09 5.1E-14 119.1 9.5 186 9-205 116-313 (317)
76 PLN02734 glycyl-tRNA synthetas 98.9 2E-09 4.2E-14 131.1 8.7 132 20-157 248-423 (684)
77 TIGR00389 glyS_dimeric glycyl- 98.9 2.2E-09 4.8E-14 128.8 7.8 132 19-157 155-324 (551)
78 PRK14894 glycyl-tRNA synthetas 98.8 1.3E-08 2.9E-13 119.2 12.0 132 19-157 137-272 (539)
79 KOG1244|consensus 98.8 1.6E-09 3.5E-14 115.6 2.7 49 1031-1079 275-323 (336)
80 COG0423 GRS1 Glycyl-tRNA synth 98.8 7.5E-09 1.6E-13 120.7 7.4 134 19-157 159-330 (558)
81 PF13831 PHD_2: PHD-finger; PD 98.8 1.2E-09 2.7E-14 84.4 0.3 36 705-749 1-36 (36)
82 COG0441 ThrS Threonyl-tRNA syn 98.7 1.3E-08 2.7E-13 123.0 7.2 237 18-279 273-546 (589)
83 cd00768 class_II_aaRS-like_cor 98.7 2.5E-08 5.5E-13 105.4 8.3 132 290-428 77-211 (211)
84 PRK00413 thrS threonyl-tRNA sy 98.7 7.8E-08 1.7E-12 119.6 12.0 219 200-451 274-540 (638)
85 PF13771 zf-HC5HC2H: PHD-like 98.6 9.7E-09 2.1E-13 95.5 0.1 67 817-888 1-70 (90)
86 PRK07080 hypothetical protein; 98.3 4E-06 8.6E-11 93.8 10.6 143 296-452 160-314 (317)
87 KOG4163|consensus 98.1 7.1E-07 1.5E-11 101.3 0.9 165 283-452 179-346 (551)
88 PRK14894 glycyl-tRNA synthetas 98.0 2.2E-05 4.7E-10 92.8 10.9 129 305-439 183-335 (539)
89 COG0441 ThrS Threonyl-tRNA syn 98.0 2.2E-05 4.8E-10 95.5 9.8 227 195-452 219-489 (589)
90 KOG4443|consensus 97.9 3.9E-06 8.4E-11 99.9 2.4 56 1028-1083 59-114 (694)
91 cd00773 HisRS-like_core Class 97.9 3.4E-05 7.3E-10 85.7 9.7 100 13-124 50-149 (261)
92 PLN02734 glycyl-tRNA synthetas 97.9 3.1E-05 6.7E-10 95.2 9.5 87 305-393 293-422 (684)
93 KOG0825|consensus 97.9 4.8E-06 1E-10 99.7 1.5 46 1036-1081 214-260 (1134)
94 PF00628 PHD: PHD-finger; Int 97.8 6E-06 1.3E-10 68.7 1.4 36 1039-1074 1-36 (51)
95 TIGR00389 glyS_dimeric glycyl- 97.7 9.3E-05 2E-09 89.6 9.6 146 304-452 200-459 (551)
96 KOG4443|consensus 97.6 2E-05 4.4E-10 94.0 2.3 97 633-750 21-117 (694)
97 PF00628 PHD: PHD-finger; Int 97.6 1.7E-05 3.7E-10 65.9 1.2 50 693-750 1-50 (51)
98 TIGR00442 hisS histidyl-tRNA s 97.5 0.00042 9E-09 81.6 10.5 98 13-122 65-162 (397)
99 PRK09537 pylS pyrolysyl-tRNA s 97.4 0.00037 8.1E-09 81.7 8.9 86 18-117 255-340 (417)
100 cd00774 GlyRS-like_core Glycyl 97.4 3.7E-05 8.1E-10 85.2 0.4 104 287-394 105-213 (254)
101 smart00249 PHD PHD zinc finger 97.4 0.00011 2.3E-09 59.0 2.9 41 1039-1079 1-42 (47)
102 KOG4323|consensus 97.4 6.1E-05 1.3E-09 88.2 2.0 110 631-752 84-225 (464)
103 PTZ00326 phenylalanyl-tRNA syn 97.4 0.0015 3.3E-08 78.1 13.7 149 19-186 325-478 (494)
104 KOG1637|consensus 97.4 0.0001 2.2E-09 85.2 3.4 179 19-206 246-461 (560)
105 KOG4323|consensus 97.4 9.5E-05 2.1E-09 86.6 2.7 127 668-858 61-223 (464)
106 PRK00037 hisS histidyl-tRNA sy 97.3 0.00056 1.2E-08 80.9 8.9 90 13-117 69-158 (412)
107 KOG1512|consensus 97.3 8.6E-05 1.9E-09 80.5 1.8 48 1031-1080 308-355 (381)
108 smart00249 PHD PHD zinc finger 97.3 0.00022 4.8E-09 57.2 3.4 47 693-748 1-47 (47)
109 CHL00201 syh histidine-tRNA sy 97.2 0.0015 3.3E-08 77.9 10.9 96 14-120 70-165 (430)
110 COG0423 GRS1 Glycyl-tRNA synth 97.2 0.00053 1.2E-08 81.1 6.5 89 305-394 205-330 (558)
111 PF01409 tRNA-synt_2d: tRNA sy 97.0 0.0074 1.6E-07 66.9 13.2 150 19-187 78-228 (247)
112 PLN02853 Probable phenylalanyl 96.9 0.0081 1.8E-07 71.8 12.7 156 14-188 310-465 (492)
113 COG0124 HisS Histidyl-tRNA syn 96.9 0.0023 5E-08 75.8 8.1 98 9-118 65-162 (429)
114 PRK12420 histidyl-tRNA synthet 96.8 0.0025 5.4E-08 75.9 8.2 91 13-116 68-158 (423)
115 PLN02530 histidine-tRNA ligase 96.8 0.0038 8.1E-08 75.7 8.9 89 13-113 132-220 (487)
116 KOG4299|consensus 96.6 0.00075 1.6E-08 80.9 1.6 45 1037-1081 253-299 (613)
117 KOG0825|consensus 96.6 0.00096 2.1E-08 80.7 2.1 54 688-751 212-266 (1134)
118 TIGR02367 PylS pyrrolysyl-tRNA 96.6 0.0069 1.5E-07 71.4 8.9 87 18-118 291-377 (453)
119 TIGR00470 sepS O-phosphoseryl- 96.3 0.031 6.6E-07 66.2 11.8 143 22-184 183-329 (533)
120 KOG1637|consensus 96.2 0.015 3.3E-07 67.8 8.5 244 195-477 191-478 (560)
121 PRK04172 pheS phenylalanyl-tRN 96.2 0.027 5.8E-07 68.5 11.1 147 13-186 321-468 (489)
122 COG0016 PheS Phenylalanyl-tRNA 95.8 0.1 2.2E-06 59.9 12.7 142 21-184 170-314 (335)
123 KOG0955|consensus 95.7 0.0083 1.8E-07 77.1 4.2 62 632-700 221-282 (1051)
124 KOG1245|consensus 95.6 0.0029 6.3E-08 84.1 -0.5 49 1035-1083 1106-1154(1404)
125 PF13832 zf-HC5HC2H_2: PHD-zin 95.6 0.0048 1E-07 59.6 1.2 57 544-617 54-110 (110)
126 PF13771 zf-HC5HC2H: PHD-like 95.3 0.0087 1.9E-07 55.6 1.7 58 541-618 32-90 (90)
127 KOG2298|consensus 95.2 0.0047 1E-07 72.0 -0.4 77 20-101 182-259 (599)
128 TIGR00443 hisZ_biosyn_reg ATP 95.1 0.076 1.7E-06 60.9 9.1 89 13-113 55-143 (314)
129 cd00669 Asp_Lys_Asn_RS_core As 95.1 0.18 4E-06 56.7 11.8 69 17-100 47-115 (269)
130 PRK12292 hisZ ATP phosphoribos 94.4 0.13 2.8E-06 60.8 8.9 89 13-113 65-154 (391)
131 PRK00488 pheS phenylalanyl-tRN 93.9 0.65 1.4E-05 53.8 12.8 143 22-184 165-317 (339)
132 PRK09537 pylS pyrolysyl-tRNA s 93.8 0.03 6.4E-07 66.2 2.0 60 287-354 280-340 (417)
133 KOG0383|consensus 93.7 0.023 4.9E-07 70.6 0.7 41 1035-1078 45-85 (696)
134 PRK12293 hisZ ATP phosphoribos 93.4 0.24 5.1E-06 56.1 8.1 86 13-120 63-148 (281)
135 PF15446 zf-PHD-like: PHD/FYVE 93.0 0.073 1.6E-06 54.9 3.0 70 693-764 1-81 (175)
136 PLN02972 Histidyl-tRNA synthet 92.5 0.4 8.7E-06 60.7 9.1 87 13-113 388-474 (763)
137 PRK12421 ATP phosphoribosyltra 92.5 0.46 1E-05 56.3 9.2 88 13-113 69-157 (392)
138 COG5141 PHD zinc finger-contai 91.5 0.079 1.7E-06 62.0 1.2 79 632-723 195-274 (669)
139 PF14446 Prok-RING_1: Prokaryo 91.2 0.13 2.9E-06 43.5 2.0 33 691-724 5-37 (54)
140 PRK12295 hisZ ATP phosphoribos 91.0 0.79 1.7E-05 54.0 8.9 90 13-118 52-141 (373)
141 KOG4299|consensus 90.4 0.14 3E-06 62.2 2.0 53 691-751 253-305 (613)
142 TIGR00468 pheS phenylalanyl-tR 90.0 2.9 6.4E-05 47.7 12.1 143 20-184 128-270 (294)
143 KOG0954|consensus 89.7 0.24 5.3E-06 60.8 3.2 64 624-697 266-329 (893)
144 KOG1973|consensus 89.5 0.17 3.6E-06 57.1 1.7 38 705-752 229-269 (274)
145 PF13393 tRNA-synt_His: Histid 89.3 2.2 4.8E-05 48.5 10.6 89 13-114 57-146 (311)
146 KOG1084|consensus 88.8 0.19 4.2E-06 59.0 1.5 85 812-907 237-321 (375)
147 TIGR00459 aspS_bact aspartyl-t 88.6 0.44 9.5E-06 59.0 4.4 46 48-101 208-253 (583)
148 PLN02903 aminoacyl-tRNA ligase 88.5 0.55 1.2E-05 58.7 5.2 46 48-101 274-319 (652)
149 PRK09350 poxB regulator PoxA; 88.5 0.36 7.8E-06 55.3 3.4 70 16-100 55-124 (306)
150 KOG0956|consensus 87.7 0.19 4.2E-06 61.1 0.6 45 575-620 139-183 (900)
151 COG0173 AspS Aspartyl-tRNA syn 87.3 0.55 1.2E-05 56.8 4.0 83 20-116 189-273 (585)
152 PRK00476 aspS aspartyl-tRNA sy 84.9 0.97 2.1E-05 56.3 4.7 46 48-101 211-256 (588)
153 KOG1246|consensus 83.4 0.73 1.6E-05 60.4 2.9 44 1035-1079 153-196 (904)
154 cd00773 HisRS-like_core Class 83.4 2.3 5E-05 47.4 6.5 68 288-361 81-149 (261)
155 PRK12820 bifunctional aspartyl 82.5 1.1 2.4E-05 56.5 3.9 69 19-101 203-271 (706)
156 KOG1973|consensus 81.3 0.85 1.8E-05 51.5 2.0 42 1037-1081 218-262 (274)
157 PRK00484 lysS lysyl-tRNA synth 80.3 3.1 6.8E-05 50.9 6.5 70 16-100 217-286 (491)
158 CHL00201 syh histidine-tRNA sy 79.6 1.4 3.1E-05 52.8 3.3 61 285-353 98-162 (430)
159 KOG0383|consensus 79.6 0.9 2E-05 57.0 1.6 40 1036-1078 505-545 (696)
160 KOG2411|consensus 79.5 0.86 1.9E-05 54.2 1.3 62 48-117 249-312 (628)
161 KOG1245|consensus 78.8 0.54 1.2E-05 63.4 -0.7 64 689-762 1106-1170(1404)
162 PF00152 tRNA-synt_2: tRNA syn 77.7 3.5 7.5E-05 47.8 5.6 71 16-100 70-140 (335)
163 cd00776 AsxRS_core Asx tRNA sy 77.0 4.3 9.3E-05 46.9 6.1 73 15-101 66-138 (322)
164 PF00130 C1_1: Phorbol esters/ 76.6 2.1 4.6E-05 35.7 2.5 38 689-726 9-46 (53)
165 PF15446 zf-PHD-like: PHD/FYVE 75.9 7.2 0.00016 40.7 6.5 129 547-726 1-142 (175)
166 cd00777 AspRS_core Asp tRNA sy 75.0 3.9 8.4E-05 46.4 4.9 46 48-101 71-116 (280)
167 PTZ00326 phenylalanyl-tRNA syn 74.6 11 0.00023 46.1 8.6 120 290-432 359-478 (494)
168 cd00775 LysRS_core Lys_tRNA sy 74.2 7.8 0.00017 45.0 7.2 71 15-100 52-122 (329)
169 cd00029 C1 Protein kinase C co 74.1 2 4.3E-05 35.0 1.7 36 690-725 10-45 (50)
170 COG5034 TNG2 Chromatin remodel 74.1 1.8 4E-05 47.6 1.9 43 695-750 224-269 (271)
171 cd00496 PheRS_alpha_core Pheny 73.4 41 0.0009 36.6 12.2 73 21-111 60-132 (218)
172 PLN02502 lysyl-tRNA synthetase 72.3 2.9 6.2E-05 51.8 3.2 69 17-100 275-343 (553)
173 TIGR00462 genX lysyl-tRNA synt 72.0 1.5 3.2E-05 50.3 0.7 82 17-116 51-132 (304)
174 PF14446 Prok-RING_1: Prokaryo 71.8 2.1 4.6E-05 36.5 1.3 33 1037-1069 5-38 (54)
175 TIGR00458 aspS_arch aspartyl-t 71.7 5.1 0.00011 48.2 5.1 72 15-100 175-246 (428)
176 PTZ00417 lysine-tRNA ligase; P 71.3 8.1 0.00018 48.2 6.8 69 17-100 299-367 (585)
177 PRK12445 lysyl-tRNA synthetase 71.2 4.5 9.7E-05 49.7 4.5 71 16-101 229-299 (505)
178 cd04718 BAH_plant_2 BAH, or Br 70.8 2.6 5.6E-05 43.2 2.0 28 717-752 1-28 (148)
179 PRK06462 asparagine synthetase 69.8 4.6 9.9E-05 47.0 4.0 73 15-100 79-151 (335)
180 PRK05159 aspC aspartyl-tRNA sy 68.4 6.4 0.00014 47.5 5.0 73 15-100 178-250 (437)
181 TIGR00499 lysS_bact lysyl-tRNA 68.4 3.6 7.9E-05 50.4 2.9 70 17-101 218-287 (496)
182 KOG1169|consensus 68.3 3.9 8.5E-05 50.7 3.1 92 632-728 46-149 (634)
183 KOG1473|consensus 66.5 3.2 7E-05 53.6 2.0 41 1038-1081 345-385 (1414)
184 PTZ00385 lysyl-tRNA synthetase 65.9 5.8 0.00013 49.9 4.0 69 17-100 279-347 (659)
185 smart00109 C1 Protein kinase C 65.8 2.7 5.8E-05 33.9 0.8 35 690-725 10-44 (49)
186 COG5189 SFP1 Putative transcri 63.6 3.1 6.8E-05 47.0 1.0 23 541-563 393-416 (423)
187 PF07649 C1_3: C1-like domain; 62.5 3.4 7.4E-05 30.7 0.7 28 693-722 2-29 (30)
188 COG2024 Phenylalanyl-tRNA synt 62.1 12 0.00026 43.6 5.2 124 39-184 200-337 (536)
189 TIGR00442 hisS histidyl-tRNA s 61.8 26 0.00056 41.5 8.3 66 288-360 96-163 (397)
190 PRK12420 histidyl-tRNA synthet 61.7 20 0.00043 43.0 7.4 63 288-358 98-162 (423)
191 TIGR00457 asnS asparaginyl-tRN 61.3 9.2 0.0002 46.4 4.5 69 17-100 189-257 (453)
192 PLN02532 asparagine-tRNA synth 60.3 9.8 0.00021 47.8 4.5 80 15-109 366-446 (633)
193 PF02318 FYVE_2: FYVE-type zin 59.3 6.9 0.00015 38.6 2.5 50 690-750 53-102 (118)
194 cd02426 Pol_gamma_b_Cterm C-te 59.2 5.3 0.00012 40.0 1.7 21 432-452 9-29 (128)
195 PRK03932 asnC asparaginyl-tRNA 59.2 8.2 0.00018 46.8 3.6 69 17-100 186-254 (450)
196 KOG1936|consensus 58.3 8.7 0.00019 45.5 3.4 84 13-113 121-209 (518)
197 PTZ00425 asparagine-tRNA ligas 58.1 11 0.00024 46.9 4.5 46 48-100 345-390 (586)
198 PF10367 Vps39_2: Vacuolar sor 56.7 7.1 0.00015 37.0 2.0 31 546-592 79-109 (109)
199 PF07649 C1_3: C1-like domain; 55.7 3.9 8.4E-05 30.4 0.0 28 1039-1066 2-29 (30)
200 PLN02221 asparaginyl-tRNA synt 55.6 15 0.00033 45.8 5.0 46 48-100 328-373 (572)
201 TIGR02367 PylS pyrrolysyl-tRNA 53.6 29 0.00062 41.9 6.7 58 290-355 320-377 (453)
202 PF10367 Vps39_2: Vacuolar sor 52.5 41 0.00088 31.8 6.5 32 1036-1068 77-108 (109)
203 PF03107 C1_2: C1 domain; Int 52.1 11 0.00025 28.1 2.0 28 693-722 2-29 (30)
204 PF01409 tRNA-synt_2d: tRNA sy 51.0 49 0.0011 37.0 7.7 125 290-434 104-229 (247)
205 PLN02603 asparaginyl-tRNA synt 51.0 18 0.00039 45.1 4.7 46 48-100 323-368 (565)
206 PF11793 FANCL_C: FANCL C-term 49.1 8.3 0.00018 34.6 1.1 31 1038-1068 3-38 (70)
207 PRK02983 lysS lysyl-tRNA synth 48.4 11 0.00024 50.5 2.4 70 16-100 815-884 (1094)
208 PLN02972 Histidyl-tRNA synthet 48.2 56 0.0012 42.1 8.4 62 290-357 419-481 (763)
209 PLN02850 aspartate-tRNA ligase 47.6 13 0.00028 46.0 2.8 72 15-100 267-339 (530)
210 COG5189 SFP1 Putative transcri 46.9 12 0.00026 42.5 2.1 59 544-640 347-408 (423)
211 PTZ00401 aspartyl-tRNA synthet 46.1 12 0.00027 46.3 2.3 70 17-100 257-327 (550)
212 PF11793 FANCL_C: FANCL C-term 45.8 9.6 0.00021 34.2 0.9 34 692-725 3-39 (70)
213 TIGR00470 sepS O-phosphoseryl- 45.0 77 0.0017 38.7 8.3 118 290-431 209-330 (533)
214 COG2269 Truncated, possibly in 41.4 43 0.00093 38.1 5.3 57 18-88 68-124 (322)
215 KOG2784|consensus 40.2 16 0.00034 42.5 1.7 118 20-153 307-424 (483)
216 COG0124 HisS Histidyl-tRNA syn 39.7 25 0.00053 42.4 3.4 59 290-355 103-163 (429)
217 PLN02788 phenylalanine-tRNA sy 39.6 1.5E+02 0.0033 35.6 9.7 142 23-187 130-279 (402)
218 PF07227 DUF1423: Protein of u 38.8 16 0.00036 43.6 1.7 37 547-595 130-166 (446)
219 PLN02853 Probable phenylalanyl 38.3 85 0.0019 38.5 7.5 143 291-471 345-487 (492)
220 cd02426 Pol_gamma_b_Cterm C-te 37.3 16 0.00034 36.7 1.1 21 186-206 9-29 (128)
221 PF07227 DUF1423: Protein of u 36.0 28 0.00062 41.7 3.0 59 693-752 130-193 (446)
222 COG5034 TNG2 Chromatin remodel 34.6 17 0.00037 40.3 0.9 18 574-591 235-253 (271)
223 PF00130 C1_1: Phorbol esters/ 34.3 23 0.0005 29.4 1.4 34 1035-1068 9-44 (53)
224 PRK06253 O-phosphoseryl-tRNA s 33.8 1.9E+02 0.0041 35.8 9.4 144 22-183 185-329 (529)
225 COG5194 APC11 Component of SCF 32.4 11 0.00023 34.8 -0.9 32 546-591 21-64 (88)
226 PF14768 RPA_interact_C: Repli 31.0 66 0.0014 29.8 4.0 28 632-660 1-28 (82)
227 PRK04172 pheS phenylalanyl-tRN 29.8 1.8E+02 0.0038 35.9 8.6 118 290-434 352-470 (489)
228 PF14569 zf-UDP: Zinc-binding 29.6 14 0.0003 33.9 -0.7 50 691-751 9-60 (80)
229 PF13901 DUF4206: Domain of un 28.2 39 0.00084 36.6 2.3 35 690-724 151-188 (202)
230 PF03107 C1_2: C1 domain; Int 27.8 43 0.00094 25.0 1.8 28 1039-1066 2-29 (30)
231 COG3705 HisZ ATP phosphoribosy 26.3 89 0.0019 37.3 4.9 97 13-125 65-163 (390)
232 KOG1701|consensus 25.3 74 0.0016 38.0 3.9 48 713-762 351-402 (468)
233 COG0016 PheS Phenylalanyl-tRNA 25.0 2.3E+02 0.005 33.3 7.8 120 291-431 195-315 (335)
234 COG0017 AsnS Aspartyl/asparagi 24.7 70 0.0015 38.6 3.7 55 48-109 201-256 (435)
235 PRK12421 ATP phosphoribosyltra 24.3 79 0.0017 37.7 4.1 57 290-353 103-161 (392)
236 PF13465 zf-H2C2_2: Zinc-finge 23.6 33 0.00072 24.6 0.5 18 539-556 7-25 (26)
237 PF03462 PCRF: PCRF domain; I 23.2 2.1E+02 0.0045 28.1 6.2 45 90-134 59-103 (115)
238 PF13639 zf-RING_2: Ring finge 22.7 30 0.00066 27.6 0.2 32 693-726 2-33 (44)
239 PF13901 DUF4206: Domain of un 22.6 66 0.0014 34.8 2.7 37 1038-1076 153-194 (202)
240 smart00547 ZnF_RBZ Zinc finger 22.2 40 0.00086 24.0 0.7 22 741-762 1-24 (26)
241 PF01841 Transglut_core: Trans 22.1 1.6E+02 0.0035 27.6 5.1 49 335-384 56-111 (113)
242 PF11781 RRN7: RNA polymerase 21.1 52 0.0011 25.9 1.2 25 693-717 10-34 (36)
243 cd03029 GRX_hybridPRX5 Glutare 21.0 1.6E+02 0.0034 25.7 4.4 25 336-360 13-37 (72)
244 KOG1169|consensus 20.5 47 0.001 41.6 1.2 74 647-725 129-211 (634)
No 1
>KOG2509|consensus
Probab=100.00 E-value=2.1e-71 Score=617.86 Aligned_cols=258 Identities=45% Similarity=0.720 Sum_probs=228.7
Q ss_pred ccCCCeeEecccccccccccccCCCCccccccCcccchHHHHHHhhhhcccchhhhhhhhhccccccccccCceEeeec-
Q psy11602 190 HQTETGVRIPDCLRKFVPAVYLNEAGEIPFVKTAPIDEEETKKQKKQKEGMKKKLTMSLFSQVGSHGRDTRGIFRVHQF- 268 (1083)
Q Consensus 190 ~~~~~Gi~lP~~L~p~~~~~~~~~~G~~pv~~P~~i~~d~~~~~~~k~~~~k~~~~~~~~~e~g~h~~dl~~i~Rv~qf- 268 (1083)
|..++|+.|..||.+|.++.+. .+||+|+.+|.++..|++.+++ +...+.+ .++-+-+.
T Consensus 179 yl~g~~a~LeqALi~yal~~l~-~kGy~pl~~P~i~rkeVm~~cg----------------~~~~~d~---~~~y~ld~~ 238 (455)
T KOG2509|consen 179 YLKGAGAFLEQALINYALDFLN-AKGYTPLTTPDILRKEVMQKCG----------------QLPRFDE---EQYYVLDGG 238 (455)
T ss_pred EEcCHHHHHHHHHHHHHHHHHH-HcCCccccCchhhhHHHHHHhc----------------cCcCCCc---ceEEeecCC
Confidence 4556778889999999999985 8999999999999977776665 2222222 12222221
Q ss_pred -c----ceEEEEeeCCCCCcch--hhhh-hhhcccccccc-----cccCcCceeEEEeeeEEEEEEeCCCchhHHHHHHH
Q psy11602 269 -E----KVEQFVLTSPHDDESW--KMLD-EMIQNSEEFYA-----DLDTRGIFRVHQFEKVEQFVLTSPHDDESWKTLDE 335 (1083)
Q Consensus 269 -d----~~~~~~~~~~~~~~s~--~~~~-~~~~~~~~~~~-----~~~trGl~Rvhqf~kvE~f~~~~~~~~~s~~~~e~ 335 (1083)
+ .|++++++++|+|+-. ..|| ++++.|.|||. |+|||||||||||+|||||++|+| ++||++|+|
T Consensus 239 ~~~~LiaTaE~plAa~~~~e~~~~~~lPiK~vg~S~CfR~EaGs~G~d~~GlyRVHqF~KVE~Fvit~P--e~S~~~~eE 316 (455)
T KOG2509|consen 239 DEKYLIATAEQPLAAYHRDEWLEEDQLPIKYVGVSRCFRAEAGSHGKDTKGLYRVHQFEKVEQFVITGP--EDSWEMLEE 316 (455)
T ss_pred ccceeEeeccchhhhhhcccccccccCceeeeehhHHHHHHhhhcccccccceeeeeeeeeEEEEecCc--chhHHHHHH
Confidence 1 7899999999999732 2466 88889999996 999999999999999999999999 569999999
Q ss_pred HHHHHHHHHHHhCCcEEEEeccCCCcchhhhceeeEEEeeCCCCcEEeeecccCcccccccccceEEecccCCCCceeeE
Q psy11602 336 MIQNSEEFYADLGIAYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLAYQSRRLLVRYGQTKKMNEKIEFV 415 (1083)
Q Consensus 336 ~~~~~e~~~~~L~lpyRvv~~~~~dl~~~a~~~~DiE~w~P~~~~y~Ev~S~sn~~d~qarrl~iry~~~~~~~~~~~~~ 415 (1083)
|++++|+||++||||||||+|||+|||.+|++||||||||||+++|+||+|||||||||||||+|||+..|.++++.+||
T Consensus 317 mi~~~eef~qsLgip~rvl~m~S~eLg~aAakKyDiEAWmPgrg~ygEl~ScSNCTDyQSRRL~IRy~~~k~~~~~~~yv 396 (455)
T KOG2509|consen 317 MINNQEEFYQSLGLPYRVLNMPSGELGAAAAKKYDIEAWMPGRGAYGELVSCSNCTDYQSRRLGIRYGQKKTNDGEKKYV 396 (455)
T ss_pred HHHHHHHHHHHhCCceeEecCCchhhCcHHHhhcchhhhcCcccccccccccccchhHHHhhhhhhcccccccCCcccee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999887778889999
Q ss_pred EeecccccchhHHHHHHHhhccCCCceecCccccccCCCcccCCCcccCCCCCCCCChh
Q psy11602 416 HMLNATACATTRVICAILETHQTETGVRIPDCLRKFVPAVYVNEAGEIPFVKTAPIDEE 474 (1083)
Q Consensus 416 htln~t~~a~~R~i~ailEn~q~~~Gi~iP~~L~py~~~~~~~~~~~~~~~~~~p~D~e 474 (1083)
||||||+|||+|+|||||||||++|||.||++||||||+ .++|||++++|++.+
T Consensus 397 HtLN~TacA~~R~l~aiLEnyQ~edGi~VPe~Lr~ym~~-----~~~ip~~k~~p~~~~ 450 (455)
T KOG2509|consen 397 HTLNGTACATPRALCAILENYQTEDGIEVPEVLRPYMGG-----QEFIPFVKPAPKNLT 450 (455)
T ss_pred eecchhhHhhhHHHHHhHhhccCCCCccCCHhHHhhcCC-----cccccccccCCcccc
Confidence 999999999999999999999999999999999999997 467999999999976
No 2
>KOG0957|consensus
Probab=100.00 E-value=6.8e-70 Score=602.90 Aligned_cols=351 Identities=45% Similarity=0.820 Sum_probs=318.6
Q ss_pred cccccCCCCCCCCCcEEEcccCCcccccccccccccCCCcccCCCCCCCCcccccccCCCCCCceeecCCCCcccccccc
Q psy11602 693 VCCVCLGERSDDVNEIVECDSCGVTVHEGCYGVQDTASISSTVSSCSTEPWFCESCRAGIAEPTCELCPNFGENHLRGLF 772 (1083)
Q Consensus 693 ~C~VC~~~~~~~~n~iv~Cd~C~i~VH~~CYGv~~~~~~~~~~~~~~~~~W~Cd~C~~~~~~~~C~LCp~~g~~~~~~~~ 772 (1083)
+|+||++.++++.++||+||+|||.||++|||+.+..++.++.+.+++.+|||++|..+...|.|.|||+
T Consensus 121 iCcVClg~rs~da~ei~qCd~CGi~VHEgCYGv~dn~si~s~~s~~stepWfCeaC~~Gvs~P~CElCPn---------- 190 (707)
T KOG0957|consen 121 ICCVCLGQRSVDAGEILQCDKCGINVHEGCYGVLDNVSIPSGSSDCSTEPWFCEACLYGVSLPHCELCPN---------- 190 (707)
T ss_pred EEEEeecCccccccceeeccccCceecccccccccccccCCCCccCCCCchhhhhHhcCCCCCccccCCC----------
Confidence 9999999999999999999999999999999999888888999999999999999999999999999999
Q ss_pred ccccccchhhhhhhhccccccccCCCCCCCCCCcceeccCCceeecccccccCCcEEecccccCceeeecCccCCcCCCc
Q psy11602 773 ENIKNGHAQRDRMRYHACHLRDSRDSSDGDRGGIFKETDVGKWVHLVCALYIPGVAFGEVDRLSNVTLFEMPYSRWGAKS 852 (1083)
Q Consensus 773 ~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~galK~t~~~~WvHv~CAlw~pev~f~~~~~~~pv~~~~ip~~r~~~~~ 852 (1083)
.+|+||.|+.|+|||++||||+|||.|++.+++.+|++.++.++.|++++
T Consensus 191 ------------------------------~~GifKetDigrWvH~iCALYvpGVafg~~~~l~~Vtl~em~ysk~Gak~ 240 (707)
T KOG0957|consen 191 ------------------------------RFGIFKETDIGRWVHAICALYVPGVAFGQTHTLCGVTLEEMDYSKFGAKT 240 (707)
T ss_pred ------------------------------cCCcccccchhhHHHHHHHhhcCccccccccccccccHHHhhhhhhccch
Confidence 89999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCCceeEEeCCCCCCccceeceeeccCC--------------------------------------------
Q psy11602 853 CALCPDESYARTELALQSPPVNCVPTLLVYMEVVFP-------------------------------------------- 888 (1083)
Q Consensus 853 C~iC~~~~~~~~GaciqC~~~~C~~~fH~~~~~~~~-------------------------------------------- 888 (1083)
|++|..+.++|+|+||.|+..-|..+||+.+.+.++
T Consensus 241 Cs~Ced~~fARtGvci~CdaGMCk~YfHVTCAQk~GlLvea~~e~DiAdpfya~CK~Ht~r~~~K~~rrny~~l~~~~~~ 320 (707)
T KOG0957|consen 241 CSACEDKIFARTGVCIRCDAGMCKEYFHVTCAQKLGLLVEATDENDIADPFYAFCKKHTNRDNLKPYRRNYDDLEKSEAR 320 (707)
T ss_pred hccccchhhhhcceeeeccchhhhhhhhhhHHhhhcceeeccccccchhhHHHHHHhhcchhhhhhhhhhhHHHHHHHHH
Confidence 999999999999999999999999999984322111
Q ss_pred -----------------------CCccchhhhhHHhhhhccCCCCCCCCCCcCcCCCCCCcHHHHHHHHHHHHHhcccch
Q psy11602 889 -----------------------QPPQRKLGKYKVKYVDMKSLRNPPWVPTQKLARPLTSSATLCRALLHKARLMEVDTG 945 (1083)
Q Consensus 889 -----------------------~~~~~~~~~~r~~y~~~~~~~~~~w~~~~k~~r~l~~~aea~r~~~~Ka~lmGis~~ 945 (1083)
..++..+.+++.+|+.++...|.+|+|.+|++|+|++||+++|++++||++||++++
T Consensus 321 r~~~k~~L~~~e~~~~p~~~eaqari~~~l~kv~~k~~~~k~~~p~~wvp~~K~~RlLtsSAsa~rrl~~KAE~mg~s~~ 400 (707)
T KOG0957|consen 321 RITVKRRLRSGELEKNPQKKEAQARIREELDKVIEKECKNKPKGPISWVPKPKQARLLTSSASAFRRLETKAEEMGLSRK 400 (707)
T ss_pred HHHHHHHHHhcccccCCCccHHHHHHHHHHHHHHHHHHhccCCCCCCCCccccccccccchHHHHHHHHHHHHHhcccHh
Confidence 014455667778888888899999999999999999999999999999999999999
Q ss_pred hhhhhhHhhhhhhhcccccCCCcccchhhhhhhhcccchhhhhHHHHHHHHHhhhhhHHHHHHHHHHhhhhhh-------
Q psy11602 946 AVAQAQSDLATLADMNKKWHIPLAFNVEFVAYFLNRNGRLGKLTREQRALAVENDSLQSEQSRLQKTYDELVY------- 1018 (1083)
Q Consensus 946 ~~e~~~~~l~s~~dv~rk~~Lp~~Fs~efv~Yy~dR~~rv~~lk~~l~~l~~~n~~L~~eqskL~~~y~~~~~------- 1018 (1083)
.|+.++++.....|++++||+||+|+.||++||.+|+.||....+++.++...+..|..+|.+|+.+|+....
T Consensus 401 ~f~~~ead~~~~id~r~k~Hv~pafs~efi~yy~~rn~rm~~i~~~m~e~~s~~~~le~eq~~l~~ey~~~~e~~~e~k~ 480 (707)
T KOG0957|consen 401 EFRQREADPFFNIDLRSKSHVPPAFSKEFIEYYTKRNERMSGISSFMQERDSQIIPLEEEQLRLSREYLAETEANQEKKS 480 (707)
T ss_pred hhcccccCccccccccccccCCccccHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998875
Q ss_pred ---------------cccc--------cCCCC--------Cc-----cccc---------cccccccccccCCCCCCcce
Q psy11602 1019 ---------------MEVV--------FPQPP--------LS-----KQAW---------GVLSHKCGLCHLSHDPHTMA 1053 (1083)
Q Consensus 1019 ---------------~gv~--------~p~~~--------l~-----~~~~---------~~~~~~c~~C~~~~~~~~~~ 1053 (1083)
+|.. .|++. ++ +... -...+.|.||+++.|+|.++
T Consensus 481 ~~~~L~~~~~~~~~llgqi~~~i~kl~~pl~e~~pks~~p~~~~~~rk~g~~st~~~s~~~a~~ysCgiCkks~dQHll~ 560 (707)
T KOG0957|consen 481 SQKHLVERFSANEELLGQILTSIEKLHQPLTELGPKSGLPLSDFNNRKSGSRSTPAISAPKAMNYSCGICKKSTDQHLLT 560 (707)
T ss_pred hHHHHHHHhhhHHHHHHhhhhhHHHhcchhhhcCCccCCcCcccccccccccCCcccccccccceeeeeeccchhhHHHh
Confidence 2211 12211 11 1111 14578999999999999999
Q ss_pred ecCccCCCccccCCCCCCCCCCCCCcCCCC
Q psy11602 1054 KCDTCHLYYHLACLDPPLLRMPKKTKLMGW 1083 (1083)
Q Consensus 1054 ~Cd~C~~~yH~~Cl~Ppl~~~P~~~~~~~W 1083 (1083)
+||+|++.||++||+|||+++||+++.+||
T Consensus 561 ~CDtC~lhYHlGCL~PPLTR~Pkk~kn~gW 590 (707)
T KOG0957|consen 561 QCDTCHLHYHLGCLSPPLTRLPKKNKNFGW 590 (707)
T ss_pred hcchhhceeeccccCCccccCcccccCcce
Confidence 999999999999999999999999999999
No 3
>PLN02678 seryl-tRNA synthetase
Probab=100.00 E-value=1.3e-63 Score=578.83 Aligned_cols=245 Identities=46% Similarity=0.713 Sum_probs=218.1
Q ss_pred ccCCCeeEecccccccccccccCCCCccccccCcccchHHHHHHhhhhcccchhhhhhhhhccccccccccCceEeee--
Q psy11602 190 HQTETGVRIPDCLRKFVPAVYLNEAGEIPFVKTAPIDEEETKKQKKQKEGMKKKLTMSLFSQVGSHGRDTRGIFRVHQ-- 267 (1083)
Q Consensus 190 ~~~~~Gi~lP~~L~p~~~~~~~~~~G~~pv~~P~~i~~d~~~~~~~k~~~~k~~~~~~~~~e~g~h~~dl~~i~Rv~q-- 267 (1083)
|..++|++|..+|..|+.+.+. ..||++|.+|++++ ...+.+.++.+.+.+ .||++..
T Consensus 168 ~l~g~ga~L~~AL~~y~ld~~~-~~Gy~~V~~P~lv~----------------~~~~~~sG~~~~f~e---~my~i~~~~ 227 (448)
T PLN02678 168 YLKGAGVLLNQALINFGLAFLR-KRGYTPLQTPFFMR----------------KDVMAKCAQLAQFDE---ELYKVTGEG 227 (448)
T ss_pred EECCHHHHHHHHHHHHHHHHHH-HcCCEEEECccccc----------------HHHHhhcCCcccchh---cCceecCCC
Confidence 3556789999999999999885 78999999999999 455566667777777 5777743
Q ss_pred cc----ceEEEEeeCCCCCc--chhhhh-hhhcccccccc-----cccCcCceeEEEeeeEEEEEEeCCCchhHHHHHHH
Q psy11602 268 FE----KVEQFVLTSPHDDE--SWKMLD-EMIQNSEEFYA-----DLDTRGIFRVHQFEKVEQFVLTSPHDDESWKTLDE 335 (1083)
Q Consensus 268 fd----~~~~~~~~~~~~~~--s~~~~~-~~~~~~~~~~~-----~~~trGl~Rvhqf~kvE~f~~~~~~~~~s~~~~e~ 335 (1083)
.+ ++++++++..|.++ |+++|| ++++.+.|||+ |++++||||||||+|||+|++|+|++.+|+++||+
T Consensus 228 ~~~yLi~TaE~~l~~~h~~~~~s~~eLPlr~~~~s~cfR~Eags~G~~~~GL~RvhqF~KvE~f~~~~pe~~~s~~~~e~ 307 (448)
T PLN02678 228 DDKYLIATSEQPLCAYHRGDWIDPKELPIRYAGYSTCFRKEAGSHGRDTLGIFRVHQFEKVEQFCITSPNGNESWEMHEE 307 (448)
T ss_pred CceeeecccccccChHHhcccCCHHhCCceeEEeccccccccccCCCcCCcceEEEEEEEEEEEEEECCCchhHHHHHHH
Confidence 12 78888899877765 468899 99999999996 67999999999999999999999964349999999
Q ss_pred HHHHHHHHHHHhCCcEEEEeccCCCcchhhhceeeEEEeeCCCCcEEeeecccCcccccccccceEEecccCCCCceeeE
Q psy11602 336 MIQNSEEFYADLGIAYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLAYQSRRLLVRYGQTKKMNEKIEFV 415 (1083)
Q Consensus 336 ~~~~~e~~~~~L~lpyRvv~~~~~dl~~~a~~~~DiE~w~P~~~~y~Ev~S~sn~~d~qarrl~iry~~~~~~~~~~~~~ 415 (1083)
|++++++||++||||||||+|||||||++|++||||||||||+++|+||||||||+|||||||+|||++.++.+++.+||
T Consensus 308 ~l~~~~~i~~~L~lpyrvv~~~sgdlg~~a~~~yDiE~W~P~~~~y~EvsS~Snc~D~QaRRl~iryr~~~~~~~~~~~v 387 (448)
T PLN02678 308 MLKNSEDFYQSLGIPYQVVSIVSGALNDAAAKKYDLEAWFPASKTYRELVSCSNCTDYQSRRLEIRYGQKKSNEQTKQYV 387 (448)
T ss_pred HHHHHHHHHHHcCCCeEEEeecccccCCchhhceeeEeeccccCCceEEeeecccccHhhhcccceecccccCCCCceeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999653224568999
Q ss_pred EeecccccchhHHHHHHHhhccCCCceecCccccccCCC
Q psy11602 416 HMLNATACATTRVICAILETHQTETGVRIPDCLRKFVPA 454 (1083)
Q Consensus 416 htln~t~~a~~R~i~ailEn~q~~~Gi~iP~~L~py~~~ 454 (1083)
||||||||||+|+|+|||||||++|||+||++||||||+
T Consensus 388 HTLNgt~lA~~R~l~AiLEn~Q~~dgi~iP~vL~pym~g 426 (448)
T PLN02678 388 HLLNSTLTATERTLCCILENYQTEDGVRVPEVLQPFMGG 426 (448)
T ss_pred EecCCchhHHHHHHHHHHHhCcCCCCeECChhhhhhcCC
Confidence 999999999999999999999999999999999999964
No 4
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.9e-63 Score=567.03 Aligned_cols=240 Identities=38% Similarity=0.609 Sum_probs=221.0
Q ss_pred cCCCeeEecccccccccccccCCCCccccccCcccchHHHHHHhhhhcccchhhhhhhhhccccccccccCceEeeecc-
Q psy11602 191 QTETGVRIPDCLRKFVPAVYLNEAGEIPFVKTAPIDEEETKKQKKQKEGMKKKLTMSLFSQVGSHGRDTRGIFRVHQFE- 269 (1083)
Q Consensus 191 ~~~~Gi~lP~~L~p~~~~~~~~~~G~~pv~~P~~i~~d~~~~~~~k~~~~k~~~~~~~~~e~g~h~~dl~~i~Rv~qfd- 269 (1083)
..+.|++|.+||.+||++.++ ++||+++.+|++|+ .+.+.++++++.+.+ ++|++...+
T Consensus 169 ~~~~~a~L~rAL~~f~ld~~~-~~Gf~e~~~P~lv~----------------~e~m~gtgqlpkf~e---~~y~v~~~~~ 228 (429)
T COG0172 169 YKGKGARLERALIQFMLDLHT-KHGFTEVLPPYLVN----------------LESMFGTGQLPKFEE---DLYKVEDPDL 228 (429)
T ss_pred EcCHHHHHHHHHHHHHHHHHH-HcCceEeeCceeec----------------HHHhhccCCCCCCcc---cceEecCCCE
Confidence 456789999999999999996 99999999999999 666788889999999 699997665
Q ss_pred ---ceEEEEeeCCCCCcchh--hhh-hhhcccccccc-----cccCcCceeEEEeeeEEEEEEeCCCchhHHHHHHHHHH
Q psy11602 270 ---KVEQFVLTSPHDDESWK--MLD-EMIQNSEEFYA-----DLDTRGIFRVHQFEKVEQFVLTSPHDDESWKTLDEMIQ 338 (1083)
Q Consensus 270 ---~~~~~~~~~~~~~~s~~--~~~-~~~~~~~~~~~-----~~~trGl~Rvhqf~kvE~f~~~~~~~~~s~~~~e~~~~ 338 (1083)
+++++++++.|.++=.. +|| .+.+.+.|||. |+|||||||||||+|||||.||+| |+|++.||+|++
T Consensus 229 ~LipTaEvpl~~l~~~Eil~~~~LP~k~~~~S~cFR~EAGs~GrdtrGliRvHQF~KVE~v~~~~P--e~S~~~~E~m~~ 306 (429)
T COG0172 229 YLIPTAEVPLTNLHRDEILDEEDLPIKYTAYSPCFRSEAGSAGKDTRGLIRVHQFDKVELVVITKP--EESEEELEEMLG 306 (429)
T ss_pred EEEecchhhhHHhhcccccccccCCeeeEEEChhhhcccccccccccceeeeeeeeeEEEEEEeCc--chhHHHHHHHHH
Confidence 99999999999988332 256 55666679985 999999999999999999999999 689999999999
Q ss_pred HHHHHHHHhCCcEEEEeccCCCcchhhhceeeEEEeeCCCCcEEeeecccCcccccccccceEEecccCCCCceeeEEee
Q psy11602 339 NSEEFYADLGIAYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLAYQSRRLLVRYGQTKKMNEKIEFVHML 418 (1083)
Q Consensus 339 ~~e~~~~~L~lpyRvv~~~~~dl~~~a~~~~DiE~w~P~~~~y~Ev~S~sn~~d~qarrl~iry~~~~~~~~~~~~~htl 418 (1083)
+||+||+.|+||||||++|||||||+|+||||||||||++++|+||||||||+||||||++|||++.. .++.+|||||
T Consensus 307 ~ae~il~~LeLPyRvv~lctGDlgf~a~kkYDlEvWlP~q~~yrEisScSnc~DfQaRR~~~Ryr~~~--~~k~~~vhTL 384 (429)
T COG0172 307 NAEEVLQELELPYRVVNLCTGDLGFSAAKKYDLEVWLPGQNKYREISSCSNCTDFQARRLNIRYRDKE--EGKREFVHTL 384 (429)
T ss_pred HHHHHHHHhCCCceEeeeccCCcCCcccCceeEEEEecCCCCceeeeeeeccccHHHHHHhccccccc--CCCcEEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999998753 4568999999
Q ss_pred cccccchhHHHHHHHhhccCCCc-eecCccccccCCC
Q psy11602 419 NATACATTRVICAILETHQTETG-VRIPDCLRKFVPA 454 (1083)
Q Consensus 419 n~t~~a~~R~i~ailEn~q~~~G-i~iP~~L~py~~~ 454 (1083)
||||||++|+|+|||||||++|| |+||++|+||||+
T Consensus 385 NGsglA~~R~l~AilENyq~~dG~v~IPevL~~y~gg 421 (429)
T COG0172 385 NGSGLAVGRTLVAILENYQQEDGSVKIPEVLRPYMGG 421 (429)
T ss_pred cchHHHHHHHHHHHHHcccCCCCCeeccHHHHhhCCc
Confidence 99999999999999999999999 9999999999985
No 5
>PLN02320 seryl-tRNA synthetase
Probab=100.00 E-value=1.8e-61 Score=562.56 Aligned_cols=243 Identities=32% Similarity=0.531 Sum_probs=211.4
Q ss_pred cCCCeeEecccccccccccccCCCCccccccCcccchHHHHHHhhhhcccchhhhhhhhhccccccccccCceEeeecc-
Q psy11602 191 QTETGVRIPDCLRKFVPAVYLNEAGEIPFVKTAPIDEEETKKQKKQKEGMKKKLTMSLFSQVGSHGRDTRGIFRVHQFE- 269 (1083)
Q Consensus 191 ~~~~Gi~lP~~L~p~~~~~~~~~~G~~pv~~P~~i~~d~~~~~~~k~~~~k~~~~~~~~~e~g~h~~dl~~i~Rv~qfd- 269 (1083)
..++|++|..+|..|+.+.+. .+||++|.+|++|+.+.+.+. ++.+...++ .+|++...+
T Consensus 228 L~g~~a~Le~ALi~f~ld~~~-~~Gy~eV~tP~lv~~~l~~~s----------------G~~p~~e~~--~~y~ie~ed~ 288 (502)
T PLN02320 228 LKNEAVLLEMALVNWTLSEVM-KKGFTPLTTPEIVRSSVVEKC----------------GFQPRGDNT--QVYSIDGSDQ 288 (502)
T ss_pred eCCHHHHHHHHHHHHHHHHHH-HcCCEEEECCccchHHHHHhc----------------CCCcccccC--ceeEECCCce
Confidence 455567788899999999885 789999999999995555444 444443331 345553322
Q ss_pred ---ceEEEEeeCCCCCcc--hhhhh-hhhcccccccc-----cccCcCceeEEEeeeEEEEEEeCCCchhHHHHHHHHHH
Q psy11602 270 ---KVEQFVLTSPHDDES--WKMLD-EMIQNSEEFYA-----DLDTRGIFRVHQFEKVEQFVLTSPHDDESWKTLDEMIQ 338 (1083)
Q Consensus 270 ---~~~~~~~~~~~~~~s--~~~~~-~~~~~~~~~~~-----~~~trGl~Rvhqf~kvE~f~~~~~~~~~s~~~~e~~~~ 338 (1083)
.+++++++.+|.++- +++|| ++...+.|||+ |++++||||||||+|||+|+||+| ++|+++|++|++
T Consensus 289 ~Li~TaE~Pl~~~~~~~ils~~dLPlRy~~~s~cFR~EAgs~G~d~rGL~RvhQF~KvE~~if~~p--eqs~~e~e~ll~ 366 (502)
T PLN02320 289 CLIGTAEIPVGGIHMDSILLESALPLKYVAFSHCFRTEAGAAGAATRGLYRVHQFSKVEMFVICRP--EESESFHEELIQ 366 (502)
T ss_pred EEeecccccccccccccccCHhhCCceeEEeccccccccccCCCcCCCceeeeeeecccEEEEECH--HHHHHHHHHHHH
Confidence 678888888888875 68999 88888889996 789999999999999999999999 789999999999
Q ss_pred HHHHHHHHhCCcEEEEeccCCCcchhhhceeeEEEeeCCCCcEEeeecccCcccccccccceEEeccc--------C--C
Q psy11602 339 NSEEFYADLGIAYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLAYQSRRLLVRYGQTK--------K--M 408 (1083)
Q Consensus 339 ~~e~~~~~L~lpyRvv~~~~~dl~~~a~~~~DiE~w~P~~~~y~Ev~S~sn~~d~qarrl~iry~~~~--------~--~ 408 (1083)
++++||+.||||||||+||+||||++|++||||||||||+++|+||||||||+|||||||+|||++.+ + .
T Consensus 367 ~~e~i~~~LgLpyrvv~l~tgDLg~~a~kkyDiEvW~P~~~~y~EvsS~SNc~DfQaRRl~iryr~~~~~~~~~~~~k~~ 446 (502)
T PLN02320 367 IEEDLFTSLGLHFKTLDMATADLGAPAYRKFDIEAWMPGLGRYGEISSASNCTDYQSRRLGIRYRPSEPPQTNPKKGKGS 446 (502)
T ss_pred HHHHHHHHcCCCeEEEEecCCccchhhhheEEEEEEecCCCcEEEEeeecchhhHhhhcccceecccccccccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999631 1 1
Q ss_pred CCceeeEEeecccccchhHHHHHHHhhccCCCc-eecCccccccCCC
Q psy11602 409 NEKIEFVHMLNATACATTRVICAILETHQTETG-VRIPDCLRKFVPA 454 (1083)
Q Consensus 409 ~~~~~~~htln~t~~a~~R~i~ailEn~q~~~G-i~iP~~L~py~~~ 454 (1083)
.++.+||||||||||||+|+|+|||||||++|| |+||++|||||||
T Consensus 447 ~~~~~~vHTLNgTalAv~R~l~AILENyQ~~dGsi~IP~vLrpym~g 493 (502)
T PLN02320 447 LGPTKFVHTLNATACAVPRMIVCLLENYQQEDGSVVIPEPLRPFMGG 493 (502)
T ss_pred CCCcceeEecccchhHHHHHHHHHHHhCcCCCCcEECChhhhhhcCC
Confidence 135799999999999999999999999999999 9999999999964
No 6
>KOG2509|consensus
Probab=100.00 E-value=1.8e-55 Score=490.47 Aligned_cols=203 Identities=63% Similarity=1.110 Sum_probs=193.3
Q ss_pred CCeeEecCChHHHHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHHHHHHHH
Q psy11602 19 DDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESWKMLDE 98 (1083)
Q Consensus 19 ~~~~L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s~~~~~~ 98 (1083)
++.||++|||++|+++|+++++...+||+||+++|+|||.|+|+||++++||||||||+|+|||.++.|+. ||++|++
T Consensus 239 ~~~~LiaTaE~plAa~~~~e~~~~~~lPiK~vg~S~CfR~EaGs~G~d~~GlyRVHqF~KVE~Fvit~Pe~--S~~~~eE 316 (455)
T KOG2509|consen 239 DEKYLIATAEQPLAAYHRDEWLEEDQLPIKYVGVSRCFRAEAGSHGKDTKGLYRVHQFEKVEQFVITGPED--SWEMLEE 316 (455)
T ss_pred ccceeEeeccchhhhhhcccccccccCceeeeehhHHHHHHhhhcccccccceeeeeeeeeEEEEecCcch--hHHHHHH
Confidence 46799999999999999999999999999999999999999999999999999999999999999999985 9999999
Q ss_pred HHHHHHHHHHHcCCceEEEEeccCCCCcccceeEeEEEEecCCCceeEEEEcCCCchhhhhcccceecc---CCC-----
Q psy11602 99 MIQNSEEFYADLGIAYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQSRRLLVRYGQ---TKQ----- 170 (1083)
Q Consensus 99 ~~~~y~~if~~LgLpyrvv~~~sgdlg~~as~~~diE~~~P~~~~~~ev~s~s~cgdyqs~rl~i~y~~---~~~----- 170 (1083)
|+++.++||++||||||+|++|||+||++|+++||||||||+.+.|+||+|||||+|||||||.|||+. .++
T Consensus 317 mi~~~eef~qsLgip~rvl~m~S~eLg~aAakKyDiEAWmPgrg~ygEl~ScSNCTDyQSRRL~IRy~~~k~~~~~~~yv 396 (455)
T KOG2509|consen 317 MINNQEEFYQSLGLPYRVLNMPSGELGAAAAKKYDIEAWMPGRGAYGELVSCSNCTDYQSRRLGIRYGQKKTNDGEKKYV 396 (455)
T ss_pred HHHHHHHHHHHhCCceeEecCCchhhCcHHHhhcchhhhcCcccccccccccccchhHHHhhhhhhcccccccCCcccee
Confidence 999999999999999999999999999999999999999999999999999999999999999999994 333
Q ss_pred -ccccccccchhheeheeccccCCCeeEecccccccccccccCCCCccccccCcccchH
Q psy11602 171 -KIYATACATTRVICAILETHQTETGVRIPDCLRKFVPAVYLNEAGEIPFVKTAPIDEE 228 (1083)
Q Consensus 171 -~~n~tg~a~~Rli~Alle~~~~~~Gi~lP~~L~p~~~~~~~~~~G~~pv~~P~~i~~d 228 (1083)
++|+|+||++|+|+|||||||+++|+.+|++|+|||+.. -|+|++.|.|+...
T Consensus 397 HtLN~TacA~~R~l~aiLEnyQ~edGi~VPe~Lr~ym~~~-----~~ip~~k~~p~~~~ 450 (455)
T KOG2509|consen 397 HTLNGTACATPRALCAILENYQTEDGIEVPEVLRPYMGGQ-----EFIPFVKPAPKNLT 450 (455)
T ss_pred eecchhhHhhhHHHHHhHhhccCCCCccCCHhHHhhcCCc-----ccccccccCCcccc
Confidence 299999999999999999999999999999999999651 28899999999844
No 7
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=100.00 E-value=1.1e-51 Score=481.29 Aligned_cols=240 Identities=34% Similarity=0.571 Sum_probs=212.8
Q ss_pred CCCeeEecccccccccccccCCCCccccccCcccchHHHHHHhhhhcccchhhhhhhhhccccccccccCceEeeecc--
Q psy11602 192 TETGVRIPDCLRKFVPAVYLNEAGEIPFVKTAPIDEEETKKQKKQKEGMKKKLTMSLFSQVGSHGRDTRGIFRVHQFE-- 269 (1083)
Q Consensus 192 ~~~Gi~lP~~L~p~~~~~~~~~~G~~pv~~P~~i~~d~~~~~~~k~~~~k~~~~~~~~~e~g~h~~dl~~i~Rv~qfd-- 269 (1083)
.+.|++|..+|..|+.+.+....||.+|.+|++|+ ..+..+.++.+.+.+ .+|++...+
T Consensus 166 ~p~ga~L~~aL~~~~~~~~~~~~G~~ev~~P~lv~----------------~~~~~~~G~~~~f~~---~ly~i~~~~~~ 226 (425)
T PRK05431 166 KGDGARLERALIQFMLDLHTEEHGYTEVIPPYLVN----------------EESMYGTGQLPKFEE---DLYKIEDDDLY 226 (425)
T ss_pred CcHHHHHHHHHHHHHHHHHHHhcCCEEEecccccc----------------HHHHhhcCccccchh---hceEecCCCEE
Confidence 34577888899999988873268999999999999 444555667777777 578775322
Q ss_pred --ceEEEEeeCCCCCc--chhhhh-hhhcccccccc-----cccCcCceeEEEeeeEEEEEEeCCCchhHHHHHHHHHHH
Q psy11602 270 --KVEQFVLTSPHDDE--SWKMLD-EMIQNSEEFYA-----DLDTRGIFRVHQFEKVEQFVLTSPHDDESWKTLDEMIQN 339 (1083)
Q Consensus 270 --~~~~~~~~~~~~~~--s~~~~~-~~~~~~~~~~~-----~~~trGl~Rvhqf~kvE~f~~~~~~~~~s~~~~e~~~~~ 339 (1083)
++.+++++..+.++ ||++|| ++++.+.|||. |++++||+|||||+|||+|+||+| ++|+++|++|+++
T Consensus 227 L~pTsE~~l~~l~~~~~~s~~dLPlr~~~~s~~fR~Eag~~g~~~~GL~Rv~qF~k~E~~~f~~~--e~s~~~~~~~l~~ 304 (425)
T PRK05431 227 LIPTAEVPLTNLHRDEILDEEELPLKYTAYSPCFRSEAGSAGRDTRGLIRVHQFDKVELVKFTKP--EDSYAELEELTAN 304 (425)
T ss_pred EEeCCcHHHHHHHhcccCCHHhCCeeEEEEcCEecCCCCcCCCCCCceeeeeeeeeeeEEEEECH--HHHHHHHHHHHHH
Confidence 55555666555555 789999 99999999996 579999999999999999999999 7899999999999
Q ss_pred HHHHHHHhCCcEEEEeccCCCcchhhhceeeEEEeeCCCCcEEeeecccCcccccccccceEEecccCCCCceeeEEeec
Q psy11602 340 SEEFYADLGIAYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLAYQSRRLLVRYGQTKKMNEKIEFVHMLN 419 (1083)
Q Consensus 340 ~e~~~~~L~lpyRvv~~~~~dl~~~a~~~~DiE~w~P~~~~y~Ev~S~sn~~d~qarrl~iry~~~~~~~~~~~~~htln 419 (1083)
+++||+.||||||+|.+++||||++|+++||||||||++++|+||+|||||+||||||++|||++.+ +++..||||||
T Consensus 305 ~~~i~~~Lglpyr~v~~~s~dlg~~a~~~~DiE~w~p~~~~~~ev~s~snc~d~qsrr~~i~~~~~~--~~~~~~~htln 382 (425)
T PRK05431 305 AEEILQKLELPYRVVLLCTGDLGFSAAKTYDLEVWLPSQNTYREISSCSNCTDFQARRANIRYRDEG--DGKPELVHTLN 382 (425)
T ss_pred HHHHHHHcCCcEEEEEcCCcccCCchHheecHHHhCcccCCeeEEEEecCccchhhhhcCcEEecCC--CCceeEEEEeC
Confidence 9999999999999999999999999999999999999999999999999999999999999999762 45689999999
Q ss_pred ccccchhHHHHHHHhhccCCCc-eecCccccccCCC
Q psy11602 420 ATACATTRVICAILETHQTETG-VRIPDCLRKFVPA 454 (1083)
Q Consensus 420 ~t~~a~~R~i~ailEn~q~~~G-i~iP~~L~py~~~ 454 (1083)
|||+|++|+|+|||||||+++| |+||++|+||||+
T Consensus 383 ~t~~a~~R~l~ailE~~q~~~g~i~iP~~l~py~~~ 418 (425)
T PRK05431 383 GSGLAVGRTLVAILENYQQADGSVTIPEVLRPYMGG 418 (425)
T ss_pred CchhhHHHHHHHHHHHCCCCCCcEECChhhhcccCC
Confidence 9999999999999999999999 9999999999974
No 8
>PLN02678 seryl-tRNA synthetase
Probab=100.00 E-value=3.1e-50 Score=467.22 Aligned_cols=191 Identities=67% Similarity=1.122 Sum_probs=182.7
Q ss_pred CCCeeEecCChHHHHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHHHHHHH
Q psy11602 18 LDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESWKMLD 97 (1083)
Q Consensus 18 ~~~~~L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s~~~~~ 97 (1083)
++++||+||||++++++|++++++|++|||||+++++|||.|+|++|++++||+|+|||+|+|+|.|+.|++.+|+++|+
T Consensus 227 ~~~~yLi~TaE~~l~~~h~~~~~s~~eLPlr~~~~s~cfR~Eags~G~~~~GL~RvhqF~KvE~f~~~~pe~~~s~~~~e 306 (448)
T PLN02678 227 GDDKYLIATSEQPLCAYHRGDWIDPKELPIRYAGYSTCFRKEAGSHGRDTLGIFRVHQFEKVEQFCITSPNGNESWEMHE 306 (448)
T ss_pred CCceeeecccccccChHHhcccCCHHhCCceeEEeccccccccccCCCcCCcceEEEEEEEEEEEEEECCCchhHHHHHH
Confidence 35789999999999999999999999999999999999999999999999999999999999999999997446999999
Q ss_pred HHHHHHHHHHHHcCCceEEEEeccCCCCcccceeEeEEEEecCCCceeEEEEcCCCchhhhhcccceeccC---CC----
Q psy11602 98 EMIQNSEEFYADLGIAYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQSRRLLVRYGQT---KQ---- 170 (1083)
Q Consensus 98 ~~~~~y~~if~~LgLpyrvv~~~sgdlg~~as~~~diE~~~P~~~~~~ev~s~s~cgdyqs~rl~i~y~~~---~~---- 170 (1083)
+|+++++.||+.||||||+|++|+||||++++++||||+|||+.++|+||+|||||+||||||++|||++. ++
T Consensus 307 ~~l~~~~~i~~~L~lpyrvv~~~sgdlg~~a~~~yDiE~W~P~~~~y~EvsS~Snc~D~QaRRl~iryr~~~~~~~~~~~ 386 (448)
T PLN02678 307 EMLKNSEDFYQSLGIPYQVVSIVSGALNDAAAKKYDLEAWFPASKTYRELVSCSNCTDYQSRRLEIRYGQKKSNEQTKQY 386 (448)
T ss_pred HHHHHHHHHHHHcCCCeEEEeecccccCCchhhceeeEeeccccCCceEEeeecccccHhhhcccceecccccCCCCcee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999964 22
Q ss_pred --ccccccccchhheeheeccccCCCeeEecccccccccc
Q psy11602 171 --KIYATACATTRVICAILETHQTETGVRIPDCLRKFVPA 208 (1083)
Q Consensus 171 --~~n~tg~a~~Rli~Alle~~~~~~Gi~lP~~L~p~~~~ 208 (1083)
++|+||+||+|+|+|||||||+.+||+||++|+|||++
T Consensus 387 vHTLNgt~lA~~R~l~AiLEn~Q~~dgi~iP~vL~pym~g 426 (448)
T PLN02678 387 VHLLNSTLTATERTLCCILENYQTEDGVRVPEVLQPFMGG 426 (448)
T ss_pred EEecCCchhHHHHHHHHHHHhCcCCCCeECChhhhhhcCC
Confidence 29999999999999999999999999999999999953
No 9
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6e-49 Score=448.33 Aligned_cols=189 Identities=49% Similarity=0.852 Sum_probs=181.5
Q ss_pred CCCeeEecCChHHHHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHHHHHHH
Q psy11602 18 LDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESWKMLD 97 (1083)
Q Consensus 18 ~~~~~L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s~~~~~ 97 (1083)
+.+++|+||+|+||++|++++|+...+||++|+++|+|||+|+|++||+||||+|+|||.|+|+|.|+.|++ |++.++
T Consensus 225 ~~~~~LipTaEvpl~~l~~~Eil~~~~LP~k~~~~S~cFR~EAGs~GrdtrGliRvHQF~KVE~v~~~~Pe~--S~~~~E 302 (429)
T COG0172 225 DPDLYLIPTAEVPLTNLHRDEILDEEDLPIKYTAYSPCFRSEAGSAGKDTRGLIRVHQFDKVELVVITKPEE--SEEELE 302 (429)
T ss_pred CCCEEEEecchhhhHHhhcccccccccCCeeeEEEChhhhcccccccccccceeeeeeeeeEEEEEEeCcch--hHHHHH
Confidence 348999999999999999999999999999999999999999999999999999999999999999999985 999999
Q ss_pred HHHHHHHHHHHHcCCceEEEEeccCCCCcccceeEeEEEEecCCCceeEEEEcCCCchhhhhcccceeccC-CC------
Q psy11602 98 EMIQNSEEFYADLGIAYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQSRRLLVRYGQT-KQ------ 170 (1083)
Q Consensus 98 ~~~~~y~~if~~LgLpyrvv~~~sgdlg~~as~~~diE~~~P~~~~~~ev~s~s~cgdyqs~rl~i~y~~~-~~------ 170 (1083)
+|+...++|++.|+||||+|.+++||||++|++|||+|+|||+++.|.||+|||||+||||||++|||+.. ++
T Consensus 303 ~m~~~ae~il~~LeLPyRvv~lctGDlgf~a~kkYDlEvWlP~q~~yrEisScSnc~DfQaRR~~~Ryr~~~~~k~~~vh 382 (429)
T COG0172 303 EMLGNAEEVLQELELPYRVVNLCTGDLGFSAAKKYDLEVWLPGQNKYREISSCSNCTDFQARRLNIRYRDKEEGKREFVH 382 (429)
T ss_pred HHHHHHHHHHHHhCCCceEeeeccCCcCCcccCceeEEEEecCCCCceeeeeeeccccHHHHHHhcccccccCCCcEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999853 22
Q ss_pred ccccccccchhheeheeccccCCCe-eEecccccccccc
Q psy11602 171 KIYATACATTRVICAILETHQTETG-VRIPDCLRKFVPA 208 (1083)
Q Consensus 171 ~~n~tg~a~~Rli~Alle~~~~~~G-i~lP~~L~p~~~~ 208 (1083)
++|+||+|++|+|+|||||||+++| +.||++|.|||+.
T Consensus 383 TLNGsglA~~R~l~AilENyq~~dG~v~IPevL~~y~gg 421 (429)
T COG0172 383 TLNGSGLAVGRTLVAILENYQQEDGSVKIPEVLRPYMGG 421 (429)
T ss_pred eccchHHHHHHHHHHHHHcccCCCCCeeccHHHHhhCCc
Confidence 2999999999999999999999999 9999999999964
No 10
>PLN02320 seryl-tRNA synthetase
Probab=100.00 E-value=6.8e-49 Score=457.48 Aligned_cols=189 Identities=46% Similarity=0.817 Sum_probs=181.4
Q ss_pred CCCeeEecCChHHHHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHHHHHHH
Q psy11602 18 LDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESWKMLD 97 (1083)
Q Consensus 18 ~~~~~L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s~~~~~ 97 (1083)
+++++|+||+|.||+++++++++++++|||||+.+++|||.|+|++|++++||+|+|||+|+|+|.|+.|+ ++++.|+
T Consensus 285 ~ed~~Li~TaE~Pl~~~~~~~ils~~dLPlRy~~~s~cFR~EAgs~G~d~rGL~RvhQF~KvE~~if~~pe--qs~~e~e 362 (502)
T PLN02320 285 GSDQCLIGTAEIPVGGIHMDSILLESALPLKYVAFSHCFRTEAGAAGAATRGLYRVHQFSKVEMFVICRPE--ESESFHE 362 (502)
T ss_pred CCceEEeecccccccccccccccCHhhCCceeEEeccccccccccCCCcCCCceeeeeeecccEEEEECHH--HHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999996 4999999
Q ss_pred HHHHHHHHHHHHcCCceEEEEeccCCCCcccceeEeEEEEecCCCceeEEEEcCCCchhhhhcccceeccC---------
Q psy11602 98 EMIQNSEEFYADLGIAYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQSRRLLVRYGQT--------- 168 (1083)
Q Consensus 98 ~~~~~y~~if~~LgLpyrvv~~~sgdlg~~as~~~diE~~~P~~~~~~ev~s~s~cgdyqs~rl~i~y~~~--------- 168 (1083)
+|++.+++||+.||||||+|++++||||++|+++||||||||+.++|+||+|||||+||||||++|+|++.
T Consensus 363 ~ll~~~e~i~~~LgLpyrvv~l~tgDLg~~a~kkyDiEvW~P~~~~y~EvsS~SNc~DfQaRRl~iryr~~~~~~~~~~~ 442 (502)
T PLN02320 363 ELIQIEEDLFTSLGLHFKTLDMATADLGAPAYRKFDIEAWMPGLGRYGEISSASNCTDYQSRRLGIRYRPSEPPQTNPKK 442 (502)
T ss_pred HHHHHHHHHHHHcCCCeEEEEecCCccchhhhheEEEEEEecCCCcEEEEeeecchhhHhhhcccceecccccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999852
Q ss_pred -C-----C----ccccccccchhheeheeccccCCCe-eEecccccccccc
Q psy11602 169 -K-----Q----KIYATACATTRVICAILETHQTETG-VRIPDCLRKFVPA 208 (1083)
Q Consensus 169 -~-----~----~~n~tg~a~~Rli~Alle~~~~~~G-i~lP~~L~p~~~~ 208 (1083)
+ . ++|+||+||+|+|+|||||||+++| |+||++|+|||++
T Consensus 443 ~k~~~~~~~~vHTLNgTalAv~R~l~AILENyQ~~dGsi~IP~vLrpym~g 493 (502)
T PLN02320 443 GKGSLGPTKFVHTLNATACAVPRMIVCLLENYQQEDGSVVIPEPLRPFMGG 493 (502)
T ss_pred ccccCCCcceeEecccchhHHHHHHHHHHHhCcCCCCcEECChhhhhhcCC
Confidence 1 1 2999999999999999999999999 9999999999953
No 11
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=100.00 E-value=3.4e-49 Score=459.68 Aligned_cols=237 Identities=38% Similarity=0.616 Sum_probs=208.8
Q ss_pred CCCeeEecccccccccccccCCCCccccccCcccchHHHHHHhhhhcccchhhhhhhhhccccccccccCceEeeecc--
Q psy11602 192 TETGVRIPDCLRKFVPAVYLNEAGEIPFVKTAPIDEEETKKQKKQKEGMKKKLTMSLFSQVGSHGRDTRGIFRVHQFE-- 269 (1083)
Q Consensus 192 ~~~Gi~lP~~L~p~~~~~~~~~~G~~pv~~P~~i~~d~~~~~~~k~~~~k~~~~~~~~~e~g~h~~dl~~i~Rv~qfd-- 269 (1083)
.+.|++|..+|..|+.+.+. ..||++|.+|.+|..+.. ...++.+.+.+ ++|++...+
T Consensus 169 ~p~g~~l~~aL~~~~~~~~~-~~G~~~v~~P~lv~~~~~----------------~~~G~~~~f~~---~~y~i~~~~~~ 228 (418)
T TIGR00414 169 KNDGAKLERALINFMLDLLE-KNGYQEIYPPYLVNEESL----------------DGTGQLPKFEE---DIFKLEDTDLY 228 (418)
T ss_pred ccHHHHHHHHHHHHHHHHHH-HcCCEEEeCCccccHHHH----------------hhcCccccccc---cceEecCCCEE
Confidence 34578888999999999885 789999999999995544 44445566666 577765433
Q ss_pred --ceEEEEeeCCCCCc--chhhhh-hhhcccccccc-----cccCcCceeEEEeeeEEEEEEeCCCchhHHHHHHHHHHH
Q psy11602 270 --KVEQFVLTSPHDDE--SWKMLD-EMIQNSEEFYA-----DLDTRGIFRVHQFEKVEQFVLTSPHDDESWKTLDEMIQN 339 (1083)
Q Consensus 270 --~~~~~~~~~~~~~~--s~~~~~-~~~~~~~~~~~-----~~~trGl~Rvhqf~kvE~f~~~~~~~~~s~~~~e~~~~~ 339 (1083)
++.+++++..+.++ |+++|| ++++.+.|||. |++|+||+|||||+|||+|.+|+| ++|+++|++|+++
T Consensus 229 L~pTsE~~~~~~~~~~i~s~~~LPlr~~~~s~~FR~E~g~~G~~t~GL~Rv~qF~k~E~~~f~~~--e~s~~~~~~~~~~ 306 (418)
T TIGR00414 229 LIPTAEVPLTNLHRNEILEEEELPIKYTAHSPCFRSEAGSYGKDTKGLIRVHQFNKVELVKFCKP--EESAEELEEMTSD 306 (418)
T ss_pred EEeCCcHHHHHHHhCcCCChHhCCeeEEEEcccccCCCCccCCCCCccccccceeeeeEEEEcCH--HHHHHHHHHHHHH
Confidence 55555566555544 788999 99999999997 589999999999999999999999 7899999999999
Q ss_pred HHHHHHHhCCcEEEEeccCCCcchhhhceeeEEEeeCCCCcEEeeecccCcccccccccceEEecccCCCCceeeEEeec
Q psy11602 340 SEEFYADLGIAYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLAYQSRRLLVRYGQTKKMNEKIEFVHMLN 419 (1083)
Q Consensus 340 ~e~~~~~L~lpyRvv~~~~~dl~~~a~~~~DiE~w~P~~~~y~Ev~S~sn~~d~qarrl~iry~~~~~~~~~~~~~htln 419 (1083)
+++||+.||||||+|.+++||||++|+++||||||||+++.|+||+|||||+||||||++|+|++.+ +++.+||||||
T Consensus 307 ~~~i~~~Lglp~r~v~~~t~dlg~~a~~~ydiE~w~p~~~~~~ev~s~sn~~d~qsrr~~i~y~~~~--~~~~~~vh~ln 384 (418)
T TIGR00414 307 AEQILQELELPYRVVNLCSGDLGFSAAKKYDLEVWMPGQNTYREISSCSNCTDFQARRLNIRYKDKN--KGKNKYVHTLN 384 (418)
T ss_pred HHHHHHHcCCceEEEecCccccccCHhhhhhHHHhCCCcCceEEEEEEcCcchHhHHhCCcEEECCC--CCceEEEEeec
Confidence 9999999999999999999999999999999999999999999999999999999999999999753 34579999999
Q ss_pred ccccchhHHHHHHHhhccCCCc-eecCccccccC
Q psy11602 420 ATACATTRVICAILETHQTETG-VRIPDCLRKFV 452 (1083)
Q Consensus 420 ~t~~a~~R~i~ailEn~q~~~G-i~iP~~L~py~ 452 (1083)
|||+|++|+|+|||||||+++| |+||++|+|||
T Consensus 385 ~~~~ai~R~i~Aile~~~~~~G~i~iP~~l~py~ 418 (418)
T TIGR00414 385 GTALAIGRTIVAILENYQTEDGSVEIPEVLRKYL 418 (418)
T ss_pred CcchHHHHHHHHHHHHccCCCCCEeCChhccccC
Confidence 9999999999999999999999 88999999998
No 12
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=100.00 E-value=1.9e-47 Score=445.85 Aligned_cols=189 Identities=46% Similarity=0.812 Sum_probs=182.2
Q ss_pred CCCeeEecCChHHHHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHHHHHHH
Q psy11602 18 LDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESWKMLD 97 (1083)
Q Consensus 18 ~~~~~L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s~~~~~ 97 (1083)
+++++|+||||++++++|+++++||++||++|+|+++|||+|+|++|++++||+|+|||+|+|+|+|+.++ +|+++|+
T Consensus 222 ~~~~~L~pTsE~~l~~l~~~~~~s~~dLPlr~~~~s~~fR~Eag~~g~~~~GL~Rv~qF~k~E~~~f~~~e--~s~~~~~ 299 (425)
T PRK05431 222 DDDLYLIPTAEVPLTNLHRDEILDEEELPLKYTAYSPCFRSEAGSAGRDTRGLIRVHQFDKVELVKFTKPE--DSYAELE 299 (425)
T ss_pred CCCEEEEeCCcHHHHHHHhcccCCHHhCCeeEEEEcCEecCCCCcCCCCCCceeeeeeeeeeeEEEEECHH--HHHHHHH
Confidence 36899999999999999999999999999999999999999999999999999999999999999999995 5999999
Q ss_pred HHHHHHHHHHHHcCCceEEEEeccCCCCcccceeEeEEEEecCCCceeEEEEcCCCchhhhhcccceeccC-CCc-----
Q psy11602 98 EMIQNSEEFYADLGIAYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQSRRLLVRYGQT-KQK----- 171 (1083)
Q Consensus 98 ~~~~~y~~if~~LgLpyrvv~~~sgdlg~~as~~~diE~~~P~~~~~~ev~s~s~cgdyqs~rl~i~y~~~-~~~----- 171 (1083)
+|+++|++||+.||||||+|.+++||||++++++||+|+|||+.++|+||+|||||+||||||++|+|++. ++.
T Consensus 300 ~~l~~~~~i~~~Lglpyr~v~~~s~dlg~~a~~~~DiE~w~p~~~~~~ev~s~snc~d~qsrr~~i~~~~~~~~~~~~~h 379 (425)
T PRK05431 300 ELTANAEEILQKLELPYRVVLLCTGDLGFSAAKTYDLEVWLPSQNTYREISSCSNCTDFQARRANIRYRDEGDGKPELVH 379 (425)
T ss_pred HHHHHHHHHHHHcCCcEEEEEcCCcccCCchHheecHHHhCcccCCeeEEEEecCccchhhhhcCcEEecCCCCceeEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999976 432
Q ss_pred -cccccccchhheeheeccccCCCe-eEecccccccccc
Q psy11602 172 -IYATACATTRVICAILETHQTETG-VRIPDCLRKFVPA 208 (1083)
Q Consensus 172 -~n~tg~a~~Rli~Alle~~~~~~G-i~lP~~L~p~~~~ 208 (1083)
||+||+|++|+|+|||||||+++| ++||++|+|||+.
T Consensus 380 tln~t~~a~~R~l~ailE~~q~~~g~i~iP~~l~py~~~ 418 (425)
T PRK05431 380 TLNGSGLAVGRTLVAILENYQQADGSVTIPEVLRPYMGG 418 (425)
T ss_pred EeCCchhhHHHHHHHHHHHCCCCCCcEECChhhhcccCC
Confidence 899999999999999999999999 9999999999953
No 13
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=100.00 E-value=1.5e-45 Score=429.06 Aligned_cols=187 Identities=50% Similarity=0.848 Sum_probs=179.3
Q ss_pred CCCeeEecCChHHHHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHHHHHHH
Q psy11602 18 LDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESWKMLD 97 (1083)
Q Consensus 18 ~~~~~L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s~~~~~ 97 (1083)
+++++|+||||+++++|++++++||++||++++|+++|||+|+|++|++|+||+|+|||+|+|+|+|+.++ +|+++|+
T Consensus 224 ~~~~~L~pTsE~~~~~~~~~~i~s~~~LPlr~~~~s~~FR~E~g~~G~~t~GL~Rv~qF~k~E~~~f~~~e--~s~~~~~ 301 (418)
T TIGR00414 224 DTDLYLIPTAEVPLTNLHRNEILEEEELPIKYTAHSPCFRSEAGSYGKDTKGLIRVHQFNKVELVKFCKPE--ESAEELE 301 (418)
T ss_pred CCCEEEEeCCcHHHHHHHhCcCCChHhCCeeEEEEcccccCCCCccCCCCCccccccceeeeeEEEEcCHH--HHHHHHH
Confidence 36799999999999999999999999999999999999999999999999999999999999999999985 5999999
Q ss_pred HHHHHHHHHHHHcCCceEEEEeccCCCCcccceeEeEEEEecCCCceeEEEEcCCCchhhhhcccceeccCC-Cc-----
Q psy11602 98 EMIQNSEEFYADLGIAYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQSRRLLVRYGQTK-QK----- 171 (1083)
Q Consensus 98 ~~~~~y~~if~~LgLpyrvv~~~sgdlg~~as~~~diE~~~P~~~~~~ev~s~s~cgdyqs~rl~i~y~~~~-~~----- 171 (1083)
+|+++|++||+.||||||+|.+++||||++++++||||+|||+.++|.||+|||||+||||+|++|+|.+.+ +.
T Consensus 302 ~~~~~~~~i~~~Lglp~r~v~~~t~dlg~~a~~~ydiE~w~p~~~~~~ev~s~sn~~d~qsrr~~i~y~~~~~~~~~~vh 381 (418)
T TIGR00414 302 EMTSDAEQILQELELPYRVVNLCSGDLGFSAAKKYDLEVWMPGQNTYREISSCSNCTDFQARRLNIRYKDKNKGKNKYVH 381 (418)
T ss_pred HHHHHHHHHHHHcCCceEEEecCccccccCHhhhhhHHHhCCCcCceEEEEEEcCcchHhHHhCCcEEECCCCCceEEEE
Confidence 999999999999999999999999999999999999999999999999999999999999999999999653 21
Q ss_pred -cccccccchhheeheeccccCCCe-eEecccccccc
Q psy11602 172 -IYATACATTRVICAILETHQTETG-VRIPDCLRKFV 206 (1083)
Q Consensus 172 -~n~tg~a~~Rli~Alle~~~~~~G-i~lP~~L~p~~ 206 (1083)
+|+||+|++|+|+||||||++++| ++||.+|+|||
T Consensus 382 ~ln~~~~ai~R~i~Aile~~~~~~G~i~iP~~l~py~ 418 (418)
T TIGR00414 382 TLNGTALAIGRTIVAILENYQTEDGSVEIPEVLRKYL 418 (418)
T ss_pred eecCcchHHHHHHHHHHHHccCCCCCEeCChhccccC
Confidence 799999999999999999999999 67999999997
No 14
>cd00770 SerRS_core Seryl-tRNA synthetase (SerRS) class II core catalytic domain. SerRS is responsible for the attachment of serine to the 3' OH group of ribose of the appropriate tRNA. This domain It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. SerRS synthetase is a homodimer.
Probab=100.00 E-value=5.1e-44 Score=400.41 Aligned_cols=236 Identities=43% Similarity=0.694 Sum_probs=203.8
Q ss_pred CCeeEecccccccccccccCCCCccccccCcccchHHHHHHhhhhcccchhhhhhhhhccccccccccCceEeeecc---
Q psy11602 193 ETGVRIPDCLRKFVPAVYLNEAGEIPFVKTAPIDEEETKKQKKQKEGMKKKLTMSLFSQVGSHGRDTRGIFRVHQFE--- 269 (1083)
Q Consensus 193 ~~Gi~lP~~L~p~~~~~~~~~~G~~pv~~P~~i~~d~~~~~~~k~~~~k~~~~~~~~~e~g~h~~dl~~i~Rv~qfd--- 269 (1083)
+.|++|-.+|..|+.+.+. ..||.+|.+|.++..+.. ...++.+.+++ ++|++...+
T Consensus 49 p~g~~l~~~l~~~~~~~~~-~~G~~ev~~P~l~~~~l~----------------~~sg~~~~~~~---~~f~v~~~~~~L 108 (297)
T cd00770 49 GDGALLERALINFALDFLT-KRGFTPVIPPFLVRKEVM----------------EGTGQLPKFDE---QLYKVEGEDLYL 108 (297)
T ss_pred CHHHHHHHHHHHHHHHHHH-HCCCEEEECcccccHHHH----------------hhcCcCccChh---cccEecCCCEEE
Confidence 3466777899999998885 789999999999995555 33344555555 577774422
Q ss_pred -ceEEEEeeCCCCC--cchhhhh-hhhcccccccc-----cccCcCceeEEEeeeEEEEEEeCCCchhHHHHHHHHHHHH
Q psy11602 270 -KVEQFVLTSPHDD--ESWKMLD-EMIQNSEEFYA-----DLDTRGIFRVHQFEKVEQFVLTSPHDDESWKTLDEMIQNS 340 (1083)
Q Consensus 270 -~~~~~~~~~~~~~--~s~~~~~-~~~~~~~~~~~-----~~~trGl~Rvhqf~kvE~f~~~~~~~~~s~~~~e~~~~~~ 340 (1083)
++...+++....+ -|+++|| ++++.+.|||. |++++||+|+|||+++|++.+|+| ++|.+++++|++.+
T Consensus 109 ~pt~e~~~~~l~~~~~~s~~~LPlr~~~~~~~fR~E~~~~g~~~~GL~R~reF~~~e~~~f~~~--e~~~~~~~~~l~~~ 186 (297)
T cd00770 109 IATAEVPLAALHRDEILEEEELPLKYAGYSPCFRKEAGSAGRDTRGLFRVHQFEKVEQFVFTKP--EESWEELEELISNA 186 (297)
T ss_pred eecCCHHHHHHHhcccCCHhhCCchheecChhHhCccccCCCCCCCceEEEeeeeeeEEEEECc--hHHHHHHHHHHHHH
Confidence 4444444443333 3889999 99999999994 578899999999999999999999 68999999999999
Q ss_pred HHHHHHhCCcEEEEeccCCCcchhhhceeeEEEeeCCCCcEEeeecccCcccccccccceEEecccCCCCceeeEEeecc
Q psy11602 341 EEFYADLGIAYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLAYQSRRLLVRYGQTKKMNEKIEFVHMLNA 420 (1083)
Q Consensus 341 e~~~~~L~lpyRvv~~~~~dl~~~a~~~~DiE~w~P~~~~y~Ev~S~sn~~d~qarrl~iry~~~~~~~~~~~~~htln~ 420 (1083)
++||+.||||||+|.++++|||++|+++||+|+|||++++|+||+|||||+||||||++|+|.+.+ +++.+||||+||
T Consensus 187 ~~i~~~lgl~~~~~~~~~~dl~~~~~~~~d~e~~~p~~~~~~e~~s~s~~~d~~s~r~~i~y~~~~--~~~~~~~~~~~~ 264 (297)
T cd00770 187 EEILQELGLPYRVVNICTGDLGFAAAKKYDIEAWMPGQGKYREISSCSNCTDFQARRLNIRYRDKK--DGKKQYVHTLNG 264 (297)
T ss_pred HHHHHHcCCcEEEEEccCccccCchhhheeeheecCCCCCeEEEEEccCccChhhhhcCcEEecCC--CCCeeeeeEecc
Confidence 999999999999999999999999999999999999999999999999999999999999999752 257899999999
Q ss_pred cccchhHHHHHHHhhccCCCc-eecCccccccC
Q psy11602 421 TACATTRVICAILETHQTETG-VRIPDCLRKFV 452 (1083)
Q Consensus 421 t~~a~~R~i~ailEn~q~~~G-i~iP~~L~py~ 452 (1083)
|+++++|+|+|||||||+++| |.+|++|+|||
T Consensus 265 ~~~~~~R~l~alle~~~~~~g~v~~P~~l~py~ 297 (297)
T cd00770 265 TALATPRTIVAILENYQTEDGSVVIPEVLRPYM 297 (297)
T ss_pred cchHHHHHHHHHHHhCcCCCCcEeCchhhcccC
Confidence 999999999999999999999 77889999998
No 15
>cd00770 SerRS_core Seryl-tRNA synthetase (SerRS) class II core catalytic domain. SerRS is responsible for the attachment of serine to the 3' OH group of ribose of the appropriate tRNA. This domain It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. SerRS synthetase is a homodimer.
Probab=100.00 E-value=5.8e-43 Score=391.87 Aligned_cols=186 Identities=60% Similarity=1.016 Sum_probs=177.9
Q ss_pred CCeeEecCChHHHHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHHHHHHHH
Q psy11602 19 DDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESWKMLDE 98 (1083)
Q Consensus 19 ~~~~L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s~~~~~~ 98 (1083)
++++|+||+|++++.+++++++||++||++++|+++|||+|++++|++++||+|+|||+|+|+|+|+.++ +|+++|++
T Consensus 104 ~~~~L~pt~e~~~~~l~~~~~~s~~~LPlr~~~~~~~fR~E~~~~g~~~~GL~R~reF~~~e~~~f~~~e--~~~~~~~~ 181 (297)
T cd00770 104 EDLYLIATAEVPLAALHRDEILEEEELPLKYAGYSPCFRKEAGSAGRDTRGLFRVHQFEKVEQFVFTKPE--ESWEELEE 181 (297)
T ss_pred CCEEEeecCCHHHHHHHhcccCCHhhCCchheecChhHhCccccCCCCCCCceEEEeeeeeeEEEEECch--HHHHHHHH
Confidence 6899999999999999999999999999999999999999999999999999999999999999999995 59999999
Q ss_pred HHHHHHHHHHHcCCceEEEEeccCCCCcccceeEeEEEEecCCCceeEEEEcCCCchhhhhcccceeccCC-Cc------
Q psy11602 99 MIQNSEEFYADLGIAYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQSRRLLVRYGQTK-QK------ 171 (1083)
Q Consensus 99 ~~~~y~~if~~LgLpyrvv~~~sgdlg~~as~~~diE~~~P~~~~~~ev~s~s~cgdyqs~rl~i~y~~~~-~~------ 171 (1083)
++++|++||++|||||+++++++||||++++++||+|+|||++++|+|+++||||+||||+|++|+|.+.+ +.
T Consensus 182 ~l~~~~~i~~~lgl~~~~~~~~~~dl~~~~~~~~d~e~~~p~~~~~~e~~s~s~~~d~~s~r~~i~y~~~~~~~~~~~~~ 261 (297)
T cd00770 182 LISNAEEILQELGLPYRVVNICTGDLGFAAAKKYDIEAWMPGQGKYREISSCSNCTDFQARRLNIRYRDKKDGKKQYVHT 261 (297)
T ss_pred HHHHHHHHHHHcCCcEEEEEccCccccCchhhheeeheecCCCCCeEEEEEccCccChhhhhcCcEEecCCCCCeeeeeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999763 42
Q ss_pred cccccccchhheeheeccccCCCeeE-ecccccccc
Q psy11602 172 IYATACATTRVICAILETHQTETGVR-IPDCLRKFV 206 (1083)
Q Consensus 172 ~n~tg~a~~Rli~Alle~~~~~~Gi~-lP~~L~p~~ 206 (1083)
+|+||++++|+|+||||||++++|++ +|.+|+|||
T Consensus 262 ~~~~~~~~~R~l~alle~~~~~~g~v~~P~~l~py~ 297 (297)
T cd00770 262 LNGTALATPRTIVAILENYQTEDGSVVIPEVLRPYM 297 (297)
T ss_pred ecccchHHHHHHHHHHHhCcCCCCcEeCchhhcccC
Confidence 69999999999999999999999955 559999997
No 16
>TIGR00409 proS_fam_II prolyl-tRNA synthetase, family II. Prolyl-tRNA synthetase is a class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes tRNA synthetases for Gly, His, Ser, and Pro. The prolyl-tRNA synthetases are divided into two widely divergent groups. This group includes enzymes from Escherichia coli, Bacillus subtilis, Aquifex aeolicus, the spirochete Treponema pallidum, Synechocystis PCC6803, and one of the two prolyL-tRNA synthetases of Saccharomyces cerevisiae. The other group includes the Pro-specific domain of a human multifunctional tRNA ligase and the prolyl-tRNA synthetases from the Archaea, the Mycoplasmas, and the spirochete Borrelia burgdorferi.
Probab=100.00 E-value=8.9e-40 Score=393.12 Aligned_cols=330 Identities=18% Similarity=0.203 Sum_probs=268.3
Q ss_pred CCCCCCCCeeEecCChHHHHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHH
Q psy11602 13 PEKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDES 92 (1083)
Q Consensus 13 ~~dr~~~~~~L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s 92 (1083)
++||.+++++|+||||+.++.++++++.||++||++||||+++||+|+ |+++||+|+|||+|+|+|+|+.+. +++
T Consensus 96 ~~dr~~~~l~LrPT~Ee~~t~~~~~~i~syr~LPlrlyqi~~~fR~E~----rpr~Gl~R~REF~~~d~~~f~~~~-~~a 170 (568)
T TIGR00409 96 LKDRKGREFVLGPTHEEVITDLARNEIKSYKQLPLNLYQIQTKFRDEI----RPRFGLMRGREFIMKDAYSFHSDE-ESL 170 (568)
T ss_pred EecCCCCEEEEcCCCcHHHHHHHHHHHhhccccCeEEEEeeCEeeCCC----CCCCCccccccEEEEEEEEEeCCh-HHH
Confidence 468899999999999999999999999999999999999999999999 678899999999999999999998 789
Q ss_pred HHHHHHHHHHHHHHHHHcCCceEEEEeccCCCCcccceeEeEEEEecCCCceeEEEEcCCCchhhhhcccceeccC----
Q psy11602 93 WKMLDEMIQNSEEFYADLGIAYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQSRRLLVRYGQT---- 168 (1083)
Q Consensus 93 ~~~~~~~~~~y~~if~~LgLpyrvv~~~sgdlg~~as~~~diE~~~P~~~~~~ev~s~s~cgdyqs~rl~i~y~~~---- 168 (1083)
+++|+.|+++|.+||++|||||++|.+++|+||+.+||+||+++ ..++++|.+|+ |.+|||+...+.....
T Consensus 171 ~~e~~~~~~~y~~if~~LgL~~~~v~~~~g~~gg~~s~ef~~~~----~~ge~~i~~c~-~~~y~an~e~a~~~~~~~~~ 245 (568)
T TIGR00409 171 DATYQKMYQAYSNIFSRLGLDFRPVQADSGAIGGSASHEFMVLA----ESGEDTIVYSD-ESDYAANIELAEALAPGERN 245 (568)
T ss_pred HHHHHHHHHHHHHHHHHhCCcceEEEeccccCCCccceEEeEec----CCCceEEEEec-CcccchhhhhhcccCccccc
Confidence 99999999999999999999999999999999999999888885 56779999999 5569998877653310
Q ss_pred C---C--cccccc------------ccchhheeheeccccCCC---e--eEec-------cccccccc---------c-c
Q psy11602 169 K---Q--KIYATA------------CATTRVICAILETHQTET---G--VRIP-------DCLRKFVP---------A-V 209 (1083)
Q Consensus 169 ~---~--~~n~tg------------~a~~Rli~Alle~~~~~~---G--i~lP-------~~L~p~~~---------~-~ 209 (1083)
. . .+++++ +...+.+++++..- ++. - +.+| .+|...++ + .
T Consensus 246 ~~~~~~~~~~tp~~~ti~~~~~~~~~~~~~~~k~~~~~~-~~~~~~~v~v~~rgd~~vn~~k~~~~~g~~~~~~~a~~~~ 324 (568)
T TIGR00409 246 APTAELDKVDTPNTKTIAELVECFNLPAEKVVKTLLVKA-VDKSEPLVALLVRGDHELNEVKAPNLLLVAQVLELATEEE 324 (568)
T ss_pred cccccceeecCCCCCcHHHHHHHhCCCHhHeeeEEEEEe-cCCccceEEEEecCcchhhHHHHHHHhccCcccccCCHHH
Confidence 0 0 144443 44588888888753 221 1 2223 12222210 0 0
Q ss_pred ----ccCCCCcc-ccccC--cccchHHHHHHhhhhcccchhhhhhhhhccccccccccCceEeeeccceEEEEeeCCCCC
Q psy11602 210 ----YLNEAGEI-PFVKT--APIDEEETKKQKKQKEGMKKKLTMSLFSQVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDD 282 (1083)
Q Consensus 210 ----~~~~~G~~-pv~~P--~~i~~d~~~~~~~k~~~~k~~~~~~~~~e~g~h~~dl~~i~Rv~qfd~~~~~~~~~~~~~ 282 (1083)
.....||+ |+..+ ++|.+|.+.... .++..|+++.|+|....+ ..|+++.+.++++..+.. |
T Consensus 325 ~~~~~g~~~g~~gpv~~~~~~~i~~D~~~~~~--------~~~~~gan~~~~h~~~~~-~~rd~~~~~~~d~~~~~e--G 393 (568)
T TIGR00409 325 IFQKIASGPGSLGPVNINGGIPVLIDQTVALM--------SDFAAGANADDKHYFNVN-WDRDVAIPEVADIRKVKE--G 393 (568)
T ss_pred HHHhhCCCCCccCccccccCceEEechhhhcc--------cccccccCCCCceeeccc-ccccCCccccchhhhhhc--c
Confidence 00267898 88875 566777777777 788899999999998332 499998888888887777 5
Q ss_pred cchhhhhhhhcccccccccccCcCceeEEEeeeEEEEEEeCCCchhHHHHHHHHHHHHHHHHHHhCCcEEEEeccCCCcc
Q psy11602 283 ESWKMLDEMIQNSEEFYADLDTRGIFRVHQFEKVEQFVLTSPHDDESWKTLDEMIQNSEEFYADLGIAYRVVNIVSGALN 362 (1083)
Q Consensus 283 ~s~~~~~~~~~~~~~~~~~~~trGl~Rvhqf~kvE~f~~~~~~~~~s~~~~e~~~~~~e~~~~~L~lpyRvv~~~~~dl~ 362 (1083)
+ .|..|...-+..|||--.|.|.
T Consensus 394 d---------~cp~c~~~l~~~rgIEvGhiF~------------------------------------------------ 416 (568)
T TIGR00409 394 D---------PSPDGQGTLKIARGIEVGHIFQ------------------------------------------------ 416 (568)
T ss_pred C---------CCCCCCCcccccceEEEEEecc------------------------------------------------
Confidence 4 4556766667778888888886
Q ss_pred hhhhceeeEEEeeCCCCcEEeeecccCcccccccccceEEecccCCCCceeeEEeecccccchhHHHHHHHhhccCCCce
Q psy11602 363 HAAAKKLDLEAWFPGSGAFRELVSCSNCLAYQSRRLLVRYGQTKKMNEKIEFVHMLNATACATTRVICAILETHQTETGV 442 (1083)
Q Consensus 363 ~~a~~~~DiE~w~P~~~~y~Ev~S~sn~~d~qarrl~iry~~~~~~~~~~~~~htln~t~~a~~R~i~ailEn~q~~~Gi 442 (1083)
.|+..|++++++|.+. +++.++++| +++|+.++|+|+||+|+|.+++|+
T Consensus 417 ---------------------------LG~kYS~~~~~~~~d~---~g~~~~~~m-gcyGIGvsRli~aiie~~~D~~Gl 465 (568)
T TIGR00409 417 ---------------------------LGTKYSEALKATFLDE---NGKNQFMTM-GCYGIGVSRLVSAIAEQHHDERGI 465 (568)
T ss_pred ---------------------------chhhhHHhcCCEEECC---CCCEEEEEE-eCCcchHHHHHHHHHHHhCccCCC
Confidence 7899999999999986 567889998 799999999999999999999999
Q ss_pred ecCccccccC
Q psy11602 443 RIPDCLRKFV 452 (1083)
Q Consensus 443 ~iP~~L~py~ 452 (1083)
+||..|+||-
T Consensus 466 ~wP~~iAP~q 475 (568)
T TIGR00409 466 IWPKAIAPYD 475 (568)
T ss_pred cCChhhCCeE
Confidence 9999999995
No 17
>COG0442 ProS Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6.4e-39 Score=374.56 Aligned_cols=307 Identities=17% Similarity=0.220 Sum_probs=237.0
Q ss_pred CCCCCCCCeeEecCChHHHHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHH
Q psy11602 13 PEKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDES 92 (1083)
Q Consensus 13 ~~dr~~~~~~L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s 92 (1083)
++||.+++|+|+||||+.|++|+++||.||+||||+||||+++||||+ |+|+||+|.|||+|+|.|+|+.+. ++|
T Consensus 96 v~drg~~~l~L~PTsEe~it~~~~~~i~SYkdLPl~lYQi~~kfRdE~----rpr~gllR~REF~mkdaySfh~~~-e~a 170 (500)
T COG0442 96 VKDRGDRPLALRPTSEEVITDMFRKWIRSYKDLPLKLYQIQSKFRDEK----RPRFGLLRGREFLMKDAYSFHADE-EDA 170 (500)
T ss_pred EEccCCceeeeCCCcHHHHHHHHHHHhhhhhhCCcceeeeeeEEeccc----cCCCCccchheeeecccccccCCH-HHH
Confidence 689999999999999999999999999999999999999999999999 889999999999999999999999 899
Q ss_pred HHHHHHHHHHHHHHHHHcCCceEEEEeccCCCCcccceeEeEEEEecCCCceeEEEEcCCCchhhhhcc-cceeccCC-C
Q psy11602 93 WKMLDEMIQNSEEFYADLGIAYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQSRRL-LVRYGQTK-Q 170 (1083)
Q Consensus 93 ~~~~~~~~~~y~~if~~LgLpyrvv~~~sgdlg~~as~~~diE~~~P~~~~~~ev~s~s~cgdyqs~rl-~i~y~~~~-~ 170 (1083)
+++|++|+++|.+||.+|||.|+.+.+.+|.+|+..++ .|+++|| +++.++|++|+++++++++.+ .++|++.. +
T Consensus 171 ~~~y~~~~~~Y~~if~~i~l~~~~~~ad~g~~Gg~~S~--eF~~l~p-d~ge~qi~ts~~y~aN~e~a~~~~~~~~~~~~ 247 (500)
T COG0442 171 EETYEKMLDAYSRIFLRLPLIFGPVPADEGFIGGSYSH--EFEALMP-DGGEDQIATSHHYGANFEKAFIDIKFEDEEEG 247 (500)
T ss_pred HHHHHHHHHHHHHHHHhCCceEEeecccCCCCCCccce--EEEEEcc-CCCccEEEEecchHHhHHHhccCCCccccccc
Confidence 99999999999999999999999999999988887766 5567888 566699999999999999999 99988765 3
Q ss_pred c---cccc-cccchhheeheeccccCCCeeEecccccccccccccCCCCccccccCcccchHHHHHHhhhhcccchhhhh
Q psy11602 171 K---IYAT-ACATTRVICAILETHQTETGVRIPDCLRKFVPAVYLNEAGEIPFVKTAPIDEEETKKQKKQKEGMKKKLTM 246 (1083)
Q Consensus 171 ~---~n~t-g~a~~Rli~Alle~~~~~~Gi~lP~~L~p~~~~~~~~~~G~~pv~~P~~i~~d~~~~~~~k~~~~k~~~~~ 246 (1083)
. +++| ...++|.+.++|..|+|+.|+++|+.++|.+ + ++.|+.+.... ...
T Consensus 248 ~~~~v~t~s~~~s~r~~~~~i~i~GDn~G~v~Pp~vA~~q-----V------~~~~~~~~ga~--------------~h~ 302 (500)
T COG0442 248 ELEYVHTTSYGISTRIIGAAILIHGDNEGLVLPPIVADIQ-----V------VIVPIFIKGAN--------------EHY 302 (500)
T ss_pred cceEecccceEEEeeeeeEEEEEecCCCCccCCchhccce-----E------EEEeccccCcc--------------hhh
Confidence 2 4443 4445999999999999999999999898888 3 55566665110 011
Q ss_pred hhhhccccccccccCc-eEeeeccceEEEEeeCCCCCcchhhhhhhhcccccccccccCcCceeEEEeeeEEEEEEeCCC
Q psy11602 247 SLFSQVGSHGRDTRGI-FRVHQFEKVEQFVLTSPHDDESWKMLDEMIQNSEEFYADLDTRGIFRVHQFEKVEQFVLTSPH 325 (1083)
Q Consensus 247 ~~~~e~g~h~~dl~~i-~Rv~qfd~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~trGl~Rvhqf~kvE~f~~~~~~ 325 (1083)
.+.+........++.+ +|++-++. .|. +. +..-...+|+--.|.|.
T Consensus 303 ~~~~~~rd~~~~l~~~~~~~~~D~~-------~~~-~~--------------G~kl~~~e~ieVghif~----------- 349 (500)
T COG0442 303 KVVNYGRDVAEPLEKLGIRVEGDDR-------SPD-GP--------------GFKLNIWEGIEVGHIFE----------- 349 (500)
T ss_pred hhhhhhhhhhhhhhhcceEEecccc-------CCC-CC--------------CceeeeeeccccCEEEE-----------
Confidence 1122222222111111 22222210 010 00 00112234444444443
Q ss_pred chhHHHHHHHHHHHHHHHHHHhCCcEEEEeccCCCcchhhhceeeEEEeeCCCCcEEeeecccCcccccccccceEEecc
Q psy11602 326 DDESWKTLDEMIQNSEEFYADLGIAYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLAYQSRRLLVRYGQT 405 (1083)
Q Consensus 326 ~~~s~~~~e~~~~~~e~~~~~L~lpyRvv~~~~~dl~~~a~~~~DiE~w~P~~~~y~Ev~S~sn~~d~qarrl~iry~~~ 405 (1083)
.|.-.+..+++.+.++
T Consensus 350 ----------------------------------------------------------------lG~kyse~~~a~v~~r 365 (500)
T COG0442 350 ----------------------------------------------------------------LGTKYSEAMNATVLDR 365 (500)
T ss_pred ----------------------------------------------------------------ECchhhhhCeeEEEec
Confidence 4556677788888776
Q ss_pred cCCCCceeeEEeecccccchhHHHHHHHhhccCCCceecCccccccCC
Q psy11602 406 KKMNEKIEFVHMLNATACATTRVICAILETHQTETGVRIPDCLRKFVP 453 (1083)
Q Consensus 406 ~~~~~~~~~~htln~t~~a~~R~i~ailEn~q~~~Gi~iP~~L~py~~ 453 (1083)
+++.++.+|. ++++.++|+++|+||++++++||.+|.+++||--
T Consensus 366 ---~g~~~~~~mg-~ygigvsr~v~a~ieq~~d~~gi~w~~a~apf~~ 409 (500)
T COG0442 366 ---DGKEQPKTMG-CYGIGVSRLVAALLEQIHDENGIIWPKAIAPFDV 409 (500)
T ss_pred ---CCCccceEEE-ehhhhhhhHHHHHHHHhcccccCccccccCccee
Confidence 5566777777 9999999999999999999999999999999964
No 18
>cd00779 ProRS_core_prok Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. This subfamily contains the core domain of ProRS from prokaryotes and from the mitochondria of eukaryotes.
Probab=100.00 E-value=9.2e-38 Score=342.99 Aligned_cols=170 Identities=18% Similarity=0.214 Sum_probs=162.0
Q ss_pred CCCCCCCeeEecCChHHHHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHHH
Q psy11602 14 EKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESW 93 (1083)
Q Consensus 14 ~dr~~~~~~L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s~ 93 (1083)
.|+.+++++|+||+|++++.++++++.++++||+|+||++++||+|+ ++++||+|+|||.|+|+++|+.++ ++|+
T Consensus 81 ~d~~~~~l~LrPt~e~~~t~~~~~~i~s~~~LPlr~~~~~~~FR~E~----~~~~Gl~R~reF~q~e~~~~~~~~-~~a~ 155 (255)
T cd00779 81 KDRHGKEFLLGPTHEEVITDLVANEIKSYKQLPLNLYQIQTKFRDEI----RPRFGLMRGREFLMKDAYSFDIDE-ESLE 155 (255)
T ss_pred ecCCCCeEEEecCCcHHHHHHHHhccccHhhCCHHHHhCcceecCCC----CCCCceeeeeeEeHhhheeccCCH-HHHH
Confidence 57777899999999999999999999999999999999999999999 678899999999999999999988 7899
Q ss_pred HHHHHHHHHHHHHHHHcCCceEEEEeccCCCCcccceeEeEEEEecCCCceeEEEEcCCCchhhhhcccceeccCCCc--
Q psy11602 94 KMLDEMIQNSEEFYADLGIAYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQSRRLLVRYGQTKQK-- 171 (1083)
Q Consensus 94 ~~~~~~~~~y~~if~~LgLpyrvv~~~sgdlg~~as~~~diE~~~P~~~~~~ev~s~s~cgdyqs~rl~i~y~~~~~~-- 171 (1083)
+.+++++.+|.+||+.|||||+++.+++++||+.++++||+|+|||+.+ ++||+|||||||+|||+++|+|++.++.
T Consensus 156 ~~~~~i~~~~~~il~~Lgl~~~~~~~~~~~~gg~~s~~~~~e~~~~~~~-~~e~~s~~~lg~~~sr~~~i~~~~~~~~~~ 234 (255)
T cd00779 156 ETYEKMYQAYSRIFKRLGLPFVKVEADSGAIGGSLSHEFHVLSPLKITK-GIEVGHIFQLGTKYSKALGATFLDENGKPK 234 (255)
T ss_pred HHHHHHHHHHHHHHHHcCCcEEEEEecCCCCCCcccEEEEEEEecCCCC-eEEEEeeeecchhHHHhcCcEEECCCCCEE
Confidence 9999999999999999999999999999999999999999999999776 8999999999999999999999976653
Q ss_pred ---cccccccchhheeheecc
Q psy11602 172 ---IYATACATTRVICAILET 189 (1083)
Q Consensus 172 ---~n~tg~a~~Rli~Alle~ 189 (1083)
+|++|++++|+|+|||||
T Consensus 235 ~~~~~~~gi~~~R~l~ai~e~ 255 (255)
T cd00779 235 PLEMGCYGIGVSRLLAAIIEQ 255 (255)
T ss_pred eeEecCccchHHHHHHHHHcC
Confidence 899999999999999996
No 19
>PRK09194 prolyl-tRNA synthetase; Provisional
Probab=100.00 E-value=1e-36 Score=368.71 Aligned_cols=328 Identities=18% Similarity=0.169 Sum_probs=257.7
Q ss_pred CCCCCCCCeeEecCChHHHHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHH
Q psy11602 13 PEKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDES 92 (1083)
Q Consensus 13 ~~dr~~~~~~L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s 92 (1083)
++|+.+++++|+||+|++++.++++++.||++||+|+||++++||+|+ ++++||+|+|||+|+|+|+|+.++ +++
T Consensus 96 ~~d~~~~~l~LrPt~e~~~~~~~~~~~~s~~~LP~r~yqi~~~fR~E~----rp~~Gl~R~reF~q~d~~~f~~~~-~~a 170 (565)
T PRK09194 96 LKDRHGRDFVLGPTHEEVITDLVRNEIKSYKQLPLNLYQIQTKFRDEI----RPRFGLMRGREFIMKDAYSFHADE-ESL 170 (565)
T ss_pred EecCCCCEEEECCCChHHHHHHHHhhhhhcccCCeEEEEeeCCccCCC----CCCCcccccccEEEeeEEEEcCCh-HHH
Confidence 468889999999999999999999999999999999999999999999 678899999999999999999988 789
Q ss_pred HHHHHHHHHHHHHHHHHcCCceEEEEeccCCCCcccceeEeEEEEecCCCceeEEEEcCCCchhhhhcccceeccC---C
Q psy11602 93 WKMLDEMIQNSEEFYADLGIAYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQSRRLLVRYGQT---K 169 (1083)
Q Consensus 93 ~~~~~~~~~~y~~if~~LgLpyrvv~~~sgdlg~~as~~~diE~~~P~~~~~~ev~s~s~cgdyqs~rl~i~y~~~---~ 169 (1083)
++.|++|+++|.+||++|||||+++.+++|+||+.++| |+|+|+..+|++|.+|++|+ |.|+...+.-... .
T Consensus 171 ~~~~~~~~~~~~~i~~~lgl~~~~~~~~~g~~gg~~s~----e~~~~~~~g~~~~~~c~~c~-~~~n~e~a~~~~~~~~~ 245 (565)
T PRK09194 171 DETYDAMYQAYSRIFDRLGLDFRAVEADSGAIGGSASH----EFMVLADSGEDTIVYSDESD-YAANIEKAEALPPPRAA 245 (565)
T ss_pred HHHHHHHHHHHHHHHHHhCCccEEEEcccccCCCceeE----EEEEecCCCceEEEEeCCCC-cchhhhhhcccCCCCcc
Confidence 99999999999999999999999999999999999999 66999999999999999999 9998887653210 0
Q ss_pred C-----cccc------------ccccchhheeheeccccCCCe--eEec-------ccccccccc---------------
Q psy11602 170 Q-----KIYA------------TACATTRVICAILETHQTETG--VRIP-------DCLRKFVPA--------------- 208 (1083)
Q Consensus 170 ~-----~~n~------------tg~a~~Rli~Alle~~~~~~G--i~lP-------~~L~p~~~~--------------- 208 (1083)
. .+.+ .++...+++++|+-... +.- +++| .+|+..++.
T Consensus 246 ~~~~~~~v~~p~~~t~~e~a~~lg~~~~~~~KtLi~~~~-~~~~lvvvp~d~~vn~~kl~~~lg~~~l~~a~~eel~~~~ 324 (565)
T PRK09194 246 AEEALEKVDTPNAKTIEELAEFLNVPAEKTVKTLLVKAD-GELVAVLVRGDHELNEVKLENLLGAAPLELATEEEIRAAL 324 (565)
T ss_pred ccccceeecCCCCCcHHHHHHHhCCCHHHeeEEEEEEeC-CeEEEEEeecchhhhHHHHHhhcCCcccccCCHHHHHHhh
Confidence 0 0111 24445777888776522 211 3344 333333321
Q ss_pred cccCCCCcc-ccccC--cccchHHHHHHhhhhcccchhhhhhhhhccccccccccCceEeeeccceEEEEeeCCCCCcch
Q psy11602 209 VYLNEAGEI-PFVKT--APIDEEETKKQKKQKEGMKKKLTMSLFSQVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESW 285 (1083)
Q Consensus 209 ~~~~~~G~~-pv~~P--~~i~~d~~~~~~~k~~~~k~~~~~~~~~e~g~h~~dl~~i~Rv~qfd~~~~~~~~~~~~~~s~ 285 (1083)
+. +.|++ |++.+ +++..|.+.... .++..+.+..|.|..... ..|+++++.+.++..+.. ++
T Consensus 325 g~--~~G~v~P~Gl~~~v~viiD~sl~~~--------~~~~~gan~~g~h~~~~~-~~~d~~~~~~~d~~~~~~--g~-- 389 (565)
T PRK09194 325 GA--VPGFLGPVGLPKDVPIIADRSVADM--------SNFVVGANEDDYHYVGVN-WGRDFPVPEVADLRNVVE--GD-- 389 (565)
T ss_pred CC--CCCccCcccCCCCceEEEecccccc--------ccccccCCCCCceeeCCc-cCcCCCcccccchhhhhc--CC--
Confidence 22 45776 77754 344444554444 667778888888887322 388887777777766665 44
Q ss_pred hhhhhhhcccccccccccCcCceeEEEeeeEEEEEEeCCCchhHHHHHHHHHHHHHHHHHHhCCcEEEEeccCCCcchhh
Q psy11602 286 KMLDEMIQNSEEFYADLDTRGIFRVHQFEKVEQFVLTSPHDDESWKTLDEMIQNSEEFYADLGIAYRVVNIVSGALNHAA 365 (1083)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~trGl~Rvhqf~kvE~f~~~~~~~~~s~~~~e~~~~~~e~~~~~L~lpyRvv~~~~~dl~~~a 365 (1083)
.|..|...-+..|||--.|.|.
T Consensus 390 -------~c~~c~~~l~~~~~iEvGh~f~--------------------------------------------------- 411 (565)
T PRK09194 390 -------PSPDGGGTLKIARGIEVGHIFQ--------------------------------------------------- 411 (565)
T ss_pred -------CCCCCCceeEEeeeEEEEEEec---------------------------------------------------
Confidence 3445544445556666666664
Q ss_pred hceeeEEEeeCCCCcEEeeecccCcccccccccceEEecccCCCCceeeEEeecccccchhHHHHHHHhhccCCCceecC
Q psy11602 366 AKKLDLEAWFPGSGAFRELVSCSNCLAYQSRRLLVRYGQTKKMNEKIEFVHMLNATACATTRVICAILETHQTETGVRIP 445 (1083)
Q Consensus 366 ~~~~DiE~w~P~~~~y~Ev~S~sn~~d~qarrl~iry~~~~~~~~~~~~~htln~t~~a~~R~i~ailEn~q~~~Gi~iP 445 (1083)
.++-.|++++++|.++ +++.++++| ++.|+.++|+|+||+|+|.+++|+++|
T Consensus 412 ------------------------lG~~ys~~~~~~~~~~---~g~~~~~~m-~~~gIGv~Rli~al~e~~~d~~gl~~P 463 (565)
T PRK09194 412 ------------------------LGTKYSEAMNATVLDE---NGKAQPLIM-GCYGIGVSRLVAAAIEQNHDEKGIIWP 463 (565)
T ss_pred ------------------------CCcchhhccCCEEECC---CCCEEeEEE-eeEechHHHHHHHHHHhhccccCccCC
Confidence 7899999999999876 567788886 599999999999999999999999999
Q ss_pred ccccccC
Q psy11602 446 DCLRKFV 452 (1083)
Q Consensus 446 ~~L~py~ 452 (1083)
..++||-
T Consensus 464 ~~iaP~~ 470 (565)
T PRK09194 464 KAIAPFD 470 (565)
T ss_pred CccCCce
Confidence 9999984
No 20
>PRK00960 seryl-tRNA synthetase; Provisional
Probab=100.00 E-value=3.9e-37 Score=361.38 Aligned_cols=230 Identities=15% Similarity=0.187 Sum_probs=188.9
Q ss_pred eeEecccccccccccccCCCCccccccCcccchHHHHHHhhhhcccchhhhhhhhhccccccccccCceEeeec------
Q psy11602 195 GVRIPDCLRKFVPAVYLNEAGEIPFVKTAPIDEEETKKQKKQKEGMKKKLTMSLFSQVGSHGRDTRGIFRVHQF------ 268 (1083)
Q Consensus 195 Gi~lP~~L~p~~~~~~~~~~G~~pv~~P~~i~~d~~~~~~~k~~~~k~~~~~~~~~e~g~h~~dl~~i~Rv~qf------ 268 (1083)
|+.|-.+|..|+.+.+....||.+|..|.+|..+...+. ++.+.+.+ ++|.+..+
T Consensus 222 Ga~L~~aL~~~i~d~~~~k~Gyeev~~P~Li~~ell~ks----------------Ghl~~F~e---~my~V~~~~~d~e~ 282 (517)
T PRK00960 222 MTKLFRAFEKLVIEEVLKPLGFDECLFPKLIPLEVMYKM----------------RYLEGLPE---GMYYVCPPKRDPEY 282 (517)
T ss_pred HHHHHHHHHHHHHHhhHhhcCCeEEECCcccCHHHHhhc----------------CCccCChh---hceEeecccccccc
Confidence 455558889999776433569999999999996666444 34444444 34443210
Q ss_pred --------cceEEEEeeC------------------------CCCCcchhhhh-hhhccc-ccccccc-cCcCceeEEEe
Q psy11602 269 --------EKVEQFVLTS------------------------PHDDESWKMLD-EMIQNS-EEFYADL-DTRGIFRVHQF 313 (1083)
Q Consensus 269 --------d~~~~~~~~~------------------------~~~~~s~~~~~-~~~~~~-~~~~~~~-~trGl~Rvhqf 313 (1083)
..++++++.. .+..-||++|| ++.+.+ .|||+.. .++||+|||||
T Consensus 283 ~~~~~~~l~~T~Evpl~~~~~~L~~~~yvLrPa~Cp~~y~~~~~~ils~rdLPLrl~e~sG~cFR~EsGs~~GL~RV~eF 362 (517)
T PRK00960 283 FEEFVDEMMVKKEVPIEKLKEKLRDPGYVLAPAQCEPFYQFFQGETVDVDELPIKFFDRSGWTYRWEGGGAHGLERVNEF 362 (517)
T ss_pred ccchhhhccccccccccccccccccccccccccCcHHHHHHHhCCcCChhhCCHHHhhccCCceeCCCCCCCCCccccee
Confidence 0122333320 01235789999 777745 8999953 58999999999
Q ss_pred eeEEEEEEeCCCchhHHHHHHHHHHHHHHHHHHhCCc-EEEEe----------ccCCCcchhhhceeeEEEeeC---CCC
Q psy11602 314 EKVEQFVLTSPHDDESWKTLDEMIQNSEEFYADLGIA-YRVVN----------IVSGALNHAAAKKLDLEAWFP---GSG 379 (1083)
Q Consensus 314 ~kvE~f~~~~~~~~~s~~~~e~~~~~~e~~~~~L~lp-yRvv~----------~~~~dl~~~a~~~~DiE~w~P---~~~ 379 (1083)
+|+|++.+++| ++|++++++|+..++.+++.|+|| ||+|. ++++||++++.+|||+||||| +++
T Consensus 363 ~kvE~h~f~tp--Eqs~ee~e~ll~~~e~i~~~LgLp~~r~v~~DPFf~~~~k~~~~d~~f~~~~tydiE~wmP~~~~~g 440 (517)
T PRK00960 363 HRIEIVWLGTP--EQVEEIRDELLKYAHILAEKLDLEYWREVGDDPFYLEGRGLEDRGIEFPDVPKYEMELWLPYRGDER 440 (517)
T ss_pred EEEEEEEEeCH--HHHHHHHHHHHHHHHHHHHHcCCCceEEecccccccccCccccccccCccccceeEEEEecCccCCC
Confidence 99999999999 789999999999999999999999 99999 999999999999999999999 899
Q ss_pred cEEeeecccCcccccccccceEEecccCCCCceeeEEeecccccchhHHHHHHHhhccCCCceecCccccccCCC
Q psy11602 380 AFRELVSCSNCLAYQSRRLLVRYGQTKKMNEKIEFVHMLNATACATTRVICAILETHQTETGVRIPDCLRKFVPA 454 (1083)
Q Consensus 380 ~y~Ev~S~sn~~d~qarrl~iry~~~~~~~~~~~~~htln~t~~a~~R~i~ailEn~q~~~Gi~iP~~L~py~~~ 454 (1083)
+|+||+|||||+||||||++|+|.+ .+++|| ||||+|++|+|+|||||||.++| .||++||+|||+
T Consensus 441 k~~ev~S~S~hgd~farrfnIk~~~-------g~~~hT-nctG~g~eR~l~AlLe~hG~d~~-~wPe~~r~~~~~ 506 (517)
T PRK00960 441 KWVAVTSANVHGTHFVEGFNIKDYK-------GRKLWT-GCTGYGLERWVIGFLAQKGFDPE-NWPEEIRKRVGE 506 (517)
T ss_pred CEEEEEeeeeccchhhHhhCcccCC-------CCeEee-cceeeHHHHHHHHHHHhcCCCCC-cCCHHHHHhhcC
Confidence 9999999999999999999998852 236999 99999999999999999999999 999999999974
No 21
>KOG2324|consensus
Probab=100.00 E-value=8.1e-37 Score=331.97 Aligned_cols=185 Identities=18% Similarity=0.230 Sum_probs=165.4
Q ss_pred CCCCCCCCeeEecCChHHHHHHHhcccC-CCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchH
Q psy11602 13 PEKDELDDKYLIATSEQPICAVHRDSWL-PEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDE 91 (1083)
Q Consensus 13 ~~dr~~~~~~L~pTsE~~i~~l~~~~i~-s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~ 91 (1083)
+.||+++.+||.||||+.+|+++++.+- ||+||||++|||+++||||. |++.||+|.|||.|+|||+|+.++ |.
T Consensus 101 l~Dr~gkq~cL~pThEE~iT~lmat~~~lsykqlPi~vYQigrKfRDEl----rpRfGLlRgREFlMKDmYsFd~~~-et 175 (457)
T KOG2324|consen 101 LHDRKGKQMCLTPTHEEDITALMATYIPLSYKQLPIRVYQIGRKFRDEL----RPRFGLLRGREFLMKDMYSFDSDE-ET 175 (457)
T ss_pred eeccCCCEeccCCchHHHHHHHHHhcCccccccCcEEeeeechhhhhcc----CccccchhhHHHHHhhhhcccCCH-HH
Confidence 7899999999999999999999999985 99999999999999999999 556699999999999999999999 89
Q ss_pred HHHHHHHHHHHHHHHHHHcCCceEEEEeccCCCCcccceeEeEEEEecCCCce---------------------------
Q psy11602 92 SWKMLDEMIQNSEEFYADLGIAYRVVNIVSGALNHAAAKKLDLEAWFPGSGAF--------------------------- 144 (1083)
Q Consensus 92 s~~~~~~~~~~y~~if~~LgLpyrvv~~~sgdlg~~as~~~diE~~~P~~~~~--------------------------- 144 (1083)
|.++|+.+.++|.+||++|||||..|.+++|++||.-||+|. .+..-+.
T Consensus 176 A~qTy~~v~~aY~~iFkqL~~pfVkv~AdsG~iGG~vShEfh----l~~~vgED~l~~C~~C~~s~n~e~~~~sk~~~Cp 251 (457)
T KOG2324|consen 176 AQQTYQLVDQAYDRIFKQLGLPFVKVWADSGDIGGEVSHEFH----LIHPVGEDTLMSCPSCGYSKNSEDLDLSKIASCP 251 (457)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCeEEEeecccccCceeeeeEe----ccCccCccceeecCcCCccCchhhhcCCccccCC
Confidence 999999999999999999999999999999999999999663 3333333
Q ss_pred ------------eEEEEcCCCchhhhhcccceeccCCCc-----cccccccchhheeheeccccCCCeeEecccccccc
Q psy11602 145 ------------RELVSCSNCLDYQSRRLLVRYGQTKQK-----IYATACATTRVICAILETHQTETGVRIPDCLRKFV 206 (1083)
Q Consensus 145 ------------~ev~s~s~cgdyqs~rl~i~y~~~~~~-----~n~tg~a~~Rli~Alle~~~~~~Gi~lP~~L~p~~ 206 (1083)
+||++....|+.+|+.|+++|-+..|. |+|+|++++|+|+|++|...+++|++||..|+||.
T Consensus 252 ~C~~~~L~~~~~IEVgHtF~LG~kYS~~lna~f~~~~gKpe~l~MgCyGIGVtRllaAa~evls~~~~lrwP~~iAPy~ 330 (457)
T KOG2324|consen 252 KCNEGRLTKTKSIEVGHTFLLGTKYSKPLNAKFVNVEGKPEFLHMGCYGIGVTRLLAAAAEVLSDDKGLRWPSLIAPYK 330 (457)
T ss_pred cccCCCcccccceEEEEEEEeccccccccCceeeeecCCcceEEecceeccHHHHHHHHHHHhccccccccccccCcce
Confidence 444444455667788899987765443 99999999999999999999999999999999997
No 22
>cd00772 ProRS_core Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain.
Probab=100.00 E-value=6.9e-36 Score=329.52 Aligned_cols=165 Identities=21% Similarity=0.204 Sum_probs=154.8
Q ss_pred CCeeEecCChHHHHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHHHHHHHH
Q psy11602 19 DDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESWKMLDE 98 (1083)
Q Consensus 19 ~~~~L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s~~~~~~ 98 (1083)
++++|+||+|++++.++++++.||++||+++||+++|||+|+ ++++||+|+|||+|+|+|+|+... ++|++.++.
T Consensus 92 ~~l~LrPt~e~~~~~~~~~~i~s~~~LPlrl~~~~~~fR~E~----r~~~Gl~R~reF~~~e~~~~~~~~-e~a~~e~~~ 166 (264)
T cd00772 92 EDFALRPTLEENIGEIAAKFIKSWKDLPQHLNQIGNKFRDEI----RPRFGFLRAREFIMKDGHSAHADA-EEADEEFLN 166 (264)
T ss_pred ceEEECCCCCHHHHHHHHhhhhhhhccCeeEEEEeCeEeCcC----CCCCCcceeeEEEEeeeEEecCCH-HHHHHHHHH
Confidence 789999999999999999999999999999999999999999 678999999999999999997666 789999999
Q ss_pred HHHHHHHHHHHcC-CceEEEEeccCCCCcccceeEeEEEEecCCCceeEEEEcCCCchhhhhccc--ceeccCCCc----
Q psy11602 99 MIQNSEEFYADLG-IAYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQSRRLL--VRYGQTKQK---- 171 (1083)
Q Consensus 99 ~~~~y~~if~~Lg-Lpyrvv~~~sgdlg~~as~~~diE~~~P~~~~~~ev~s~s~cgdyqs~rl~--i~y~~~~~~---- 171 (1083)
|+++|++||+.|| |||+++.+++||+|.+++++||||+||| ++.+.++.++|+|+|+||++++ |+|+++++.
T Consensus 167 ~~~~~~~i~~~l~~lp~~~~~~~~~d~~~g~~~~~d~e~~~p-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 245 (264)
T cd00772 167 MLSAYAEIARDLAAIDFIEGEADEGAKFAGASKSREFEALME-DGKAKQAETGHIFGEGFARAFDLKAKFLDKDGKEKFF 245 (264)
T ss_pred HHHHHHHHHHhcCCccEEEEEcCCCccccCCcCCEEEEEECC-CCCEeEEEeeeeccCCchhhcCCccEEECCCCCEEEE
Confidence 9999999999999 9999999999999999999999999999 5667888889999999999666 999976653
Q ss_pred -cccccccchhheeheecc
Q psy11602 172 -IYATACATTRVICAILET 189 (1083)
Q Consensus 172 -~n~tg~a~~Rli~Alle~ 189 (1083)
+|++|+|++|+|+||||+
T Consensus 246 ~~n~~gi~~~R~l~aile~ 264 (264)
T cd00772 246 EMGCWGIGISRFIGAIIEQ 264 (264)
T ss_pred EeccccchHHHHHHHhhcC
Confidence 899999999999999984
No 23
>KOG0954|consensus
Probab=100.00 E-value=9.1e-36 Score=344.87 Aligned_cols=238 Identities=29% Similarity=0.608 Sum_probs=186.5
Q ss_pred CCCCCccccccCCCCCCCCCcEEEcccCCcccccccccccccCCCcccCCCCCCCCcccccccCCCCCCceeecCCCCcc
Q psy11602 687 KFSKILVCCVCLGERSDDVNEIVECDSCGVTVHEGCYGVQDTASISSTVSSCSTEPWFCESCRAGIAEPTCELCPNFGEN 766 (1083)
Q Consensus 687 ~~~~~~~C~VC~~~~~~~~n~iv~Cd~C~i~VH~~CYGv~~~~~~~~~~~~~~~~~W~Cd~C~~~~~~~~C~LCp~~g~~ 766 (1083)
.++++..|+||+.+++++.|+|||||+|+++|||.|||+..+ |+++|+|+.|... ..+.|+|||+
T Consensus 267 e~dedviCDvCrspD~e~~neMVfCd~Cn~cVHqaCyGIle~----------p~gpWlCr~Calg-~~ppCvLCPk---- 331 (893)
T KOG0954|consen 267 EYDEDVICDVCRSPDSEEANEMVFCDKCNICVHQACYGILEV----------PEGPWLCRTCALG-IEPPCVLCPK---- 331 (893)
T ss_pred eccccceeceecCCCccccceeEEeccchhHHHHhhhceeec----------CCCCeeehhcccc-CCCCeeeccc----
Confidence 378999999999999999999999999999999999999887 7899999999998 4799999999
Q ss_pred ccccccccccccchhhhhhhhccccccccCCCCCCCCCCcceeccCC-ceeecccccccCCcEEecccccCceeee-cCc
Q psy11602 767 HLRGLFENIKNGHAQRDRMRYHACHLRDSRDSSDGDRGGIFKETDVG-KWVHLVCALYIPGVAFGEVDRLSNVTLF-EMP 844 (1083)
Q Consensus 767 ~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~galK~t~~~-~WvHv~CAlw~pev~f~~~~~~~pv~~~-~ip 844 (1083)
+||+||++..| +|+||.||||+|||.|++.+.|+||+.+ .||
T Consensus 332 ------------------------------------kGGamK~~~sgT~wAHvsCALwIPEVsie~~ekmePItkfs~Ip 375 (893)
T KOG0954|consen 332 ------------------------------------KGGAMKPTKSGTKWAHVSCALWIPEVSIECPEKMEPITKFSHIP 375 (893)
T ss_pred ------------------------------------cCCcccccCCCCeeeEeeeeeccceeeccCHhhcCcccccCCCc
Confidence 89999999887 8999999999999999999999999977 699
Q ss_pred cCCcCCCccccCCCCCCCCceeEEeCCCCCCccceecee--------eccCCCCccchhhhhHHhhhhccCC---CCCCC
Q psy11602 845 YSRWGAKSCALCPDESYARTELALQSPPVNCVPTLLVYM--------EVVFPQPPQRKLGKYKVKYVDMKSL---RNPPW 913 (1083)
Q Consensus 845 ~~r~~~~~C~iC~~~~~~~~GaciqC~~~~C~~~fH~~~--------~~~~~~~~~~~~~~~r~~y~~~~~~---~~~~w 913 (1083)
.+||.+ .|.+|+.+ .||||||+..+|.+.||+.+ +.+....+...+..++.++.++... .+..-
T Consensus 376 esRwsl-vC~LCk~k----~GACIqCs~k~C~t~fHv~CA~~aG~~~~~~~~~~D~v~~~s~c~khs~~~~~~s~g~~~e 450 (893)
T KOG0954|consen 376 ESRWSL-VCNLCKVK----SGACIQCSNKTCRTAFHVTCAFEAGLEMKTILKENDEVKFKSYCSKHSDHREGKSLGNEAE 450 (893)
T ss_pred HHHHHH-HHHHhccc----CcceEEecccchhhhccchhhhhcCCeeeeeeccCCchhheeecccccccccccccccccC
Confidence 999985 99999985 99999999999999999954 3444444444444444332222110 00001
Q ss_pred CCCcCcCC-CCCCcHHHHHHHHHHHHHhcccchhhhhhhHhhhhhhhcccccCCCcccchhhhhhhhcccchhhh
Q psy11602 914 VPTQKLAR-PLTSSATLCRALLHKARLMEVDTGAVAQAQSDLATLADMNKKWHIPLAFNVEFVAYFLNRNGRLGK 987 (1083)
Q Consensus 914 ~~~~k~~r-~l~~~aea~r~~~~Ka~lmGis~~~~e~~~~~l~s~~dv~rk~~Lp~~Fs~efv~Yy~dR~~rv~~ 987 (1083)
.|. -+.. +..+..+.-+...+..+|.++ +..+++++...|++..+.++. |.+.|++-|+...+....
T Consensus 451 ~p~-p~~~~p~~~~~e~~~~s~r~q~l~~~-----e~ef~~~v~~~diae~l~~~e-~~vs~iynywklkrks~~ 518 (893)
T KOG0954|consen 451 SPH-PRCHLPEQSVGEGHRSSDRAQKLQEL-----EGEFYDIVRNEDIAELLSMPE-FAVSAIYNYWKLKRKSRF 518 (893)
T ss_pred CCC-ccccChhhhhhhhhhhhHHHHHHhhc-----chhHhhhhhHHHHHHHhcCch-HHHHHHHHHHHHhhhccC
Confidence 110 0100 123334666667777777777 888999999999999888665 778899877766665553
No 24
>cd00779 ProRS_core_prok Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. This subfamily contains the core domain of ProRS from prokaryotes and from the mitochondria of eukaryotes.
Probab=100.00 E-value=3.2e-35 Score=322.90 Aligned_cols=215 Identities=17% Similarity=0.207 Sum_probs=176.0
Q ss_pred eeEecccccccccccccCCCCccccccCcccchHHHHHHhhhhcccchhhhhhhhhccccccccccCceEeeec--cc--
Q psy11602 195 GVRIPDCLRKFVPAVYLNEAGEIPFVKTAPIDEEETKKQKKQKEGMKKKLTMSLFSQVGSHGRDTRGIFRVHQF--EK-- 270 (1083)
Q Consensus 195 Gi~lP~~L~p~~~~~~~~~~G~~pv~~P~~i~~d~~~~~~~k~~~~k~~~~~~~~~e~g~h~~dl~~i~Rv~qf--d~-- 270 (1083)
|.++-.+|..++.+.+. ..||.+|.+|+++..+...+ .++.+.+.+ .+|++... +.
T Consensus 30 g~~l~~~i~~~~~~~~~-~~G~~ei~~P~l~~~~~~~~----------------sg~~~~~~~---emy~~~d~~~~~l~ 89 (255)
T cd00779 30 GLRVLKKIENIIREEMN-KIGAQEILMPILQPAELWKE----------------SGRWDAYGP---ELLRLKDRHGKEFL 89 (255)
T ss_pred HHHHHHHHHHHHHHHHH-HcCCEEEECCccCCHHHHHh----------------cCCccccCc---ccEEEecCCCCeEE
Confidence 34444677888777763 67999999999999554422 233334444 46665432 11
Q ss_pred ---eEEEEeeCCCCC--cchhhhh-hhhccccccccc-ccCcCceeEEEeeeEEEEEEeCCCchhHHHHHHHHHHHHHHH
Q psy11602 271 ---VEQFVLTSPHDD--ESWKMLD-EMIQNSEEFYAD-LDTRGIFRVHQFEKVEQFVLTSPHDDESWKTLDEMIQNSEEF 343 (1083)
Q Consensus 271 ---~~~~~~~~~~~~--~s~~~~~-~~~~~~~~~~~~-~~trGl~Rvhqf~kvE~f~~~~~~~~~s~~~~e~~~~~~e~~ 343 (1083)
+....++.+..+ .|+++|| ++++...|||+. +..+||+|+|||.++|+..++.++ ++|++.+++|+.+++++
T Consensus 90 LrPt~e~~~t~~~~~~i~s~~~LPlr~~~~~~~FR~E~~~~~Gl~R~reF~q~e~~~~~~~~-~~a~~~~~~i~~~~~~i 168 (255)
T cd00779 90 LGPTHEEVITDLVANEIKSYKQLPLNLYQIQTKFRDEIRPRFGLMRGREFLMKDAYSFDIDE-ESLEETYEKMYQAYSRI 168 (255)
T ss_pred EecCCcHHHHHHHHhccccHhhCCHHHHhCcceecCCCCCCCceeeeeeEeHhhheeccCCH-HHHHHHHHHHHHHHHHH
Confidence 111112222221 3577899 999999999998 889999999999999999999985 68999999999999999
Q ss_pred HHHhCCcEEEEeccCCCcchhhhceeeEEEeeCCCCcEEeeecccCcccccccccceEEecccCCCCceeeEEeeccccc
Q psy11602 344 YADLGIAYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLAYQSRRLLVRYGQTKKMNEKIEFVHMLNATAC 423 (1083)
Q Consensus 344 ~~~L~lpyRvv~~~~~dl~~~a~~~~DiE~w~P~~~~y~Ev~S~sn~~d~qarrl~iry~~~~~~~~~~~~~htln~t~~ 423 (1083)
|+.|||||+++..++++||..++++||||+|||+++ |+||+|||||+||||||++|||++. +++.+|||| ||+|+
T Consensus 169 l~~Lgl~~~~~~~~~~~~gg~~s~~~~~e~~~~~~~-~~e~~s~~~lg~~~sr~~~i~~~~~---~~~~~~~~~-~~~gi 243 (255)
T cd00779 169 FKRLGLPFVKVEADSGAIGGSLSHEFHVLSPLKITK-GIEVGHIFQLGTKYSKALGATFLDE---NGKPKPLEM-GCYGI 243 (255)
T ss_pred HHHcCCcEEEEEecCCCCCCcccEEEEEEEecCCCC-eEEEEeeeecchhHHHhcCcEEECC---CCCEEeeEe-cCccc
Confidence 999999999999999999999999999999999887 8999999999999999999999975 567899999 99999
Q ss_pred chhHHHHHHHhh
Q psy11602 424 ATTRVICAILET 435 (1083)
Q Consensus 424 a~~R~i~ailEn 435 (1083)
||+|+|+|||||
T Consensus 244 ~~~R~l~ai~e~ 255 (255)
T cd00779 244 GVSRLLAAIIEQ 255 (255)
T ss_pred hHHHHHHHHHcC
Confidence 999999999997
No 25
>cd00778 ProRS_core_arch_euk Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. This subfamily contains the core domain of ProRS from archaea, the cytoplasm of eukaryotes and some bacteria.
Probab=100.00 E-value=2.9e-34 Score=316.38 Aligned_cols=164 Identities=21% Similarity=0.209 Sum_probs=153.7
Q ss_pred CCCeeEecCChHHHHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHHHHHHH
Q psy11602 18 LDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESWKMLD 97 (1083)
Q Consensus 18 ~~~~~L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s~~~~~ 97 (1083)
+++++|+||+|++++.++++++.||++||+++||+++|||+|+ ++++||+|+|||+|+|+|+++.+. ++|++.|+
T Consensus 91 ~~~~~L~Pt~e~~~~~~~~~~i~s~r~LPlr~~~~~~~fR~E~----~~~~Gl~R~reF~~~d~h~~~~~~-e~~~~~~~ 165 (261)
T cd00778 91 EEPLALRPTSETAIYPMFSKWIRSYRDLPLKINQWVNVFRWET----KTTRPFLRTREFLWQEGHTAHATE-EEAEEEVL 165 (261)
T ss_pred CCcEEEcCCCCHHHHHHHHhhccchhhcCHHHHhhhhhccCCC----CCCCceeEeeeeeeeceeeccCCH-HHHHHHHH
Confidence 3589999999999999999999999999999999999999999 778999999999999999877666 68999999
Q ss_pred HHHHHHHHHHHHc-CCceEEEEeccCCCCcccceeEeEEEEecCCCceeEEEEcCCCchhhhhcccceeccCCCc-----
Q psy11602 98 EMIQNSEEFYADL-GIAYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQSRRLLVRYGQTKQK----- 171 (1083)
Q Consensus 98 ~~~~~y~~if~~L-gLpyrvv~~~sgdlg~~as~~~diE~~~P~~~~~~ev~s~s~cgdyqs~rl~i~y~~~~~~----- 171 (1083)
+++++|++||+.| ||||+++..++||++.++.++||+|+||| .+++.||+||+||+|+||+||+|+|.+.++.
T Consensus 166 ~~~~~~~~i~~~llgl~~~~~~~~~~d~~~~a~~~~~ie~~~p-~~~~~ev~s~~~l~~~~s~r~~i~y~~~~g~~~~~h 244 (261)
T cd00778 166 QILDLYKEFYEDLLAIPVVKGRKTEWEKFAGADYTYTIEAMMP-DGRALQSGTSHNLGQNFSKAFDIKYQDKDGQKEYVH 244 (261)
T ss_pred HHHHHHHHHHHHhCCCeEEEecCCccccCCCCccceEEEEEee-CCCEEEEEeccccccccchhcCCEEECCCCCCcCcE
Confidence 9999999999999 99999999999999999999999999999 8999999999999999999999999977653
Q ss_pred cccccccchhheeheec
Q psy11602 172 IYATACATTRVICAILE 188 (1083)
Q Consensus 172 ~n~tg~a~~Rli~Alle 188 (1083)
+|++| +++|+|+|||.
T Consensus 245 ~~~~g-~~~R~i~ali~ 260 (261)
T cd00778 245 QTSWG-ISTRLIGAIIM 260 (261)
T ss_pred Eeccc-HHHHHHHHHHh
Confidence 67777 55999999985
No 26
>cd00772 ProRS_core Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain.
Probab=100.00 E-value=1.1e-33 Score=311.89 Aligned_cols=210 Identities=18% Similarity=0.168 Sum_probs=166.3
Q ss_pred ccccccccccccCCCCccccccCcccchHHHHHHhhhhcccchhhhhhhhhccccccccccCceEeeecc----------
Q psy11602 200 DCLRKFVPAVYLNEAGEIPFVKTAPIDEEETKKQKKQKEGMKKKLTMSLFSQVGSHGRDTRGIFRVHQFE---------- 269 (1083)
Q Consensus 200 ~~L~p~~~~~~~~~~G~~pv~~P~~i~~d~~~~~~~k~~~~k~~~~~~~~~e~g~h~~dl~~i~Rv~qfd---------- 269 (1083)
..|..++...+ ...||.+|.+|+++..+...+.+ +.+.... .+++++...+
T Consensus 36 ~~I~~~i~~~~-~~~G~~ev~~P~l~~~~~~~~~g----------------~~~~~~~--~e~~~~~~~~~~~~~~~l~L 96 (264)
T cd00772 36 DKIENVLDKMF-KEHGAQNALFPFFILASFLEKEA----------------EHDEGFS--KELAVFKDAGDEELEEDFAL 96 (264)
T ss_pred HHHHHHHHHHH-HHcCCeEEECCeeccHHHHhhcC----------------CcccccC--ccceEEEeCCCCccCceEEE
Confidence 45555555555 36799999999999966554332 2222111 0234433211
Q ss_pred -ceEEEEeeCCCCCc--chhhhh-hhhccccccccc-ccCcCceeEEEeeeEEEEEE-eCCCchhHHHHHHHHHHHHHHH
Q psy11602 270 -KVEQFVLTSPHDDE--SWKMLD-EMIQNSEEFYAD-LDTRGIFRVHQFEKVEQFVL-TSPHDDESWKTLDEMIQNSEEF 343 (1083)
Q Consensus 270 -~~~~~~~~~~~~~~--s~~~~~-~~~~~~~~~~~~-~~trGl~Rvhqf~kvE~f~~-~~~~~~~s~~~~e~~~~~~e~~ 343 (1083)
++..++++..+.++ ||++|| ++++...|||.. ++++||+|+|||.++|++.+ +.+ ++|++.+++|++++++|
T Consensus 97 rPt~e~~~~~~~~~~i~s~~~LPlrl~~~~~~fR~E~r~~~Gl~R~reF~~~e~~~~~~~~--e~a~~e~~~~~~~~~~i 174 (264)
T cd00772 97 RPTLEENIGEIAAKFIKSWKDLPQHLNQIGNKFRDEIRPRFGFLRAREFIMKDGHSAHADA--EEADEEFLNMLSAYAEI 174 (264)
T ss_pred CCCCCHHHHHHHHhhhhhhhccCeeEEEEeCeEeCcCCCCCCcceeeEEEEeeeEEecCCH--HHHHHHHHHHHHHHHHH
Confidence 22333333322222 688999 999999999998 87899999999999999999 666 78999999999999999
Q ss_pred HHHhC-CcEEEEeccCCCcchhhhceeeEEEeeCCCCcEEeeecccCccccccc--ccceEEecccCCCCceeeEEeecc
Q psy11602 344 YADLG-IAYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLAYQSR--RLLVRYGQTKKMNEKIEFVHMLNA 420 (1083)
Q Consensus 344 ~~~L~-lpyRvv~~~~~dl~~~a~~~~DiE~w~P~~~~y~Ev~S~sn~~d~qar--rl~iry~~~~~~~~~~~~~htln~ 420 (1083)
|+.|+ ||||++..++||++++|.++|||||||| +++++++.++|||+||||| +|+|||++. +++.+|||| ||
T Consensus 175 ~~~l~~lp~~~~~~~~~d~~~g~~~~~d~e~~~p-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---~~~~~~~~~-n~ 249 (264)
T cd00772 175 ARDLAAIDFIEGEADEGAKFAGASKSREFEALME-DGKAKQAETGHIFGEGFARAFDLKAKFLDK---DGKEKFFEM-GC 249 (264)
T ss_pred HHhcCCccEEEEEcCCCccccCCcCCEEEEEECC-CCCEeEEEeeeeccCCchhhcCCccEEECC---CCCEEEEEe-cc
Confidence 99999 9999999999999999999999999999 6778888888889999999 555999975 467899999 99
Q ss_pred cccchhHHHHHHHhh
Q psy11602 421 TACATTRVICAILET 435 (1083)
Q Consensus 421 t~~a~~R~i~ailEn 435 (1083)
||+||+|+|+||||+
T Consensus 250 ~gi~~~R~l~aile~ 264 (264)
T cd00772 250 WGIGISRFIGAIIEQ 264 (264)
T ss_pred ccchHHHHHHHhhcC
Confidence 999999999999994
No 27
>PRK08661 prolyl-tRNA synthetase; Provisional
Probab=100.00 E-value=4.1e-33 Score=330.61 Aligned_cols=181 Identities=20% Similarity=0.208 Sum_probs=170.9
Q ss_pred CCCeeEecCChHHHHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHHHHHHH
Q psy11602 18 LDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESWKMLD 97 (1083)
Q Consensus 18 ~~~~~L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s~~~~~ 97 (1083)
+++++|+||||++++.++++|+.||++|||++||++++||+|+ + ++||+|+|||+|+|+|+++.+. ++|++.|+
T Consensus 103 ~e~l~LrPtsE~~i~~~~~~~i~SyrdLPlrl~q~~~vfR~E~----~-~rgl~R~rEF~~~E~h~~~~~~-eea~~e~~ 176 (477)
T PRK08661 103 EEKLALRPTSETIIYPMYKKWIQSYRDLPLLYNQWVNVVRWET----K-TRPFLRTREFLWQEGHTAHATE-EEAEEETL 176 (477)
T ss_pred CceEEEecCCcHHHHHHHHhhhcchhhcCHHHhcccceeeCCC----C-CCCcceeeeEEEcceeeeeCCH-HHHHHHHH
Confidence 5789999999999999999999999999999999999999999 5 7799999999999999988887 78999999
Q ss_pred HHHHHHHHHH-HHcCCceEEEEeccCCCCcccceeEeEEEEecCCCceeEEEEcCCCchhhhhcccceeccCCCc-----
Q psy11602 98 EMIQNSEEFY-ADLGIAYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQSRRLLVRYGQTKQK----- 171 (1083)
Q Consensus 98 ~~~~~y~~if-~~LgLpyrvv~~~sgdlg~~as~~~diE~~~P~~~~~~ev~s~s~cgdyqs~rl~i~y~~~~~~----- 171 (1083)
+++++|.+|| +.|||||+++..+.+++++++.++||+|+|||+ ++..|+++++++|+++|++|+|+|.+.++.
T Consensus 177 ~~l~~y~~i~~~~Lglp~~~~~~~~~ekf~ga~~~~~ie~~~~d-gr~~q~gt~~~Lg~~~s~~f~i~y~d~~g~~~~v~ 255 (477)
T PRK08661 177 EMLEIYKEFFEDYLAIPVIIGKKTEWEKFAGADYTYTIEAMMPD-GKALQAGTSHYLGQNFAKAFDIKFQDKDGKLEYVH 255 (477)
T ss_pred HHHHHHHHHHHHhcCCeEEEEecChHHhhCCCcceeEEEEEeCC-CCEEEEEEecccccchhHhcCCEEECCCCCEeeeE
Confidence 9999999999 999999999999999999999999999999996 788999999999999999999999987764
Q ss_pred cccccccchhheeheeccccCCCeeEecccccccc
Q psy11602 172 IYATACATTRVICAILETHQTETGVRIPDCLRKFV 206 (1083)
Q Consensus 172 ~n~tg~a~~Rli~Alle~~~~~~Gi~lP~~L~p~~ 206 (1083)
++++|++ +|+|+||||+|+|+.|++||..++|++
T Consensus 256 ~~s~G~~-~R~i~alie~~~D~~Gl~lP~~iAP~q 289 (477)
T PRK08661 256 QTSWGVS-TRLIGALIMTHGDDKGLVLPPKIAPIQ 289 (477)
T ss_pred EecccHH-HHHHHHHHHHhCccCCCccCcccCCCe
Confidence 5555655 999999999999999999999999998
No 28
>KOG0956|consensus
Probab=99.98 E-value=2.4e-33 Score=322.03 Aligned_cols=146 Identities=39% Similarity=0.859 Sum_probs=134.7
Q ss_pred CccccccCCCCCCCCCcEEEccc--CCcccccccccccccCCCcccCCCCCCCCcccccccCCC--CCCceeecCCCCcc
Q psy11602 691 ILVCCVCLGERSDDVNEIVECDS--CGVTVHEGCYGVQDTASISSTVSSCSTEPWFCESCRAGI--AEPTCELCPNFGEN 766 (1083)
Q Consensus 691 ~~~C~VC~~~~~~~~n~iv~Cd~--C~i~VH~~CYGv~~~~~~~~~~~~~~~~~W~Cd~C~~~~--~~~~C~LCp~~g~~ 766 (1083)
.--||||-+++.+.+|++|+||+ |-++|||.||||..+ |+|+|||+.|+... ..+.|.|||.
T Consensus 5 VGGCCVCSDErGWaeNPLVYCDG~nCsVAVHQaCYGIvqV----------PtGpWfCrKCesqeraarvrCeLCP~---- 70 (900)
T KOG0956|consen 5 VGGCCVCSDERGWAENPLVYCDGHNCSVAVHQACYGIVQV----------PTGPWFCRKCESQERAARVRCELCPH---- 70 (900)
T ss_pred ccceeeecCcCCCccCceeeecCCCceeeeehhcceeEec----------CCCchhhhhhhhhhhhccceeecccC----
Confidence 34799999999999999999997 999999999999998 89999999999753 4689999999
Q ss_pred ccccccccccccchhhhhhhhccccccccCCCCCCCCCCcceeccCCceeecccccccCCcEEecccccCceeeecCccC
Q psy11602 767 HLRGLFENIKNGHAQRDRMRYHACHLRDSRDSSDGDRGGIFKETDVGKWVHLVCALYIPGVAFGEVDRLSNVTLFEMPYS 846 (1083)
Q Consensus 767 ~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~galK~t~~~~WvHv~CAlw~pev~f~~~~~~~pv~~~~ip~~ 846 (1083)
+.||||+|+.+.|+||+||||+|||.|+|+.+|+||.+..||..
T Consensus 71 ------------------------------------kdGALKkTDn~GWAHVVCALYIPEVrFgNV~TMEPIiLq~VP~d 114 (900)
T KOG0956|consen 71 ------------------------------------KDGALKKTDNGGWAHVVCALYIPEVRFGNVHTMEPIILQDVPHD 114 (900)
T ss_pred ------------------------------------cccceecccCCCceEEEEEeeccceeecccccccceeeccCchh
Confidence 79999999999999999999999999999999999999999999
Q ss_pred CcCCCccccCCCC---CCCCceeEEeCCCCCCccceeceeeccC
Q psy11602 847 RWGAKSCALCPDE---SYARTELALQSPPVNCVPTLLVYMEVVF 887 (1083)
Q Consensus 847 r~~~~~C~iC~~~---~~~~~GaciqC~~~~C~~~fH~~~~~~~ 887 (1083)
||. ++|+||+.. ..+..||||+|+..+|++.|||.+.+..
T Consensus 115 Rfn-KtCYIC~E~GrpnkA~~GACMtCNKs~CkqaFHVTCAQ~~ 157 (900)
T KOG0956|consen 115 RFN-KTCYICNEEGRPNKAAKGACMTCNKSGCKQAFHVTCAQRA 157 (900)
T ss_pred hhc-ceeeeecccCCccccccccceecccccchhhhhhhHhhhh
Confidence 997 799999875 5688999999999999999999765443
No 29
>PRK00960 seryl-tRNA synthetase; Provisional
Probab=99.98 E-value=6.9e-33 Score=325.65 Aligned_cols=186 Identities=18% Similarity=0.282 Sum_probs=171.4
Q ss_pred CCCCCeeEecCChHHHHHHHhcccCCCCCCCceEeeec-cccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHHHH
Q psy11602 16 DELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVS-TCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESWK 94 (1083)
Q Consensus 16 r~~~~~~L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~-~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s~~ 94 (1083)
..+..++|.||++.+++.+|+++++++++||||+++++ +|||+|+|+ ++||+|+|||.|+|++.|++++ ++++
T Consensus 305 L~~~~yvLrPa~Cp~~y~~~~~~ils~rdLPLrl~e~sG~cFR~EsGs----~~GL~RV~eF~kvE~h~f~tpE--qs~e 378 (517)
T PRK00960 305 LRDPGYVLAPAQCEPFYQFFQGETVDVDELPIKFFDRSGWTYRWEGGG----AHGLERVNEFHRIEIVWLGTPE--QVEE 378 (517)
T ss_pred cccccccccccCcHHHHHHHhCCcCChhhCCHHHhhccCCceeCCCCC----CCCCcccceeEEEEEEEEeCHH--HHHH
Confidence 34567899999999999999999999999999999954 999999853 7899999999999999999986 5999
Q ss_pred HHHHHHHHHHHHHHHcCCc-eEEEE----------eccCCCCcccceeEeEEEEec---CCCceeEEEEcCCCchhhhhc
Q psy11602 95 MLDEMIQNSEEFYADLGIA-YRVVN----------IVSGALNHAAAKKLDLEAWFP---GSGAFRELVSCSNCLDYQSRR 160 (1083)
Q Consensus 95 ~~~~~~~~y~~if~~LgLp-yrvv~----------~~sgdlg~~as~~~diE~~~P---~~~~~~ev~s~s~cgdyqs~r 160 (1083)
.+++++...+.+++.|||| ||++. +++|||++++.++||+|+||| ++++|.+|+|||+|+||||+|
T Consensus 379 e~e~ll~~~e~i~~~LgLp~~r~v~~DPFf~~~~k~~~~d~~f~~~~tydiE~wmP~~~~~gk~~ev~S~S~hgd~farr 458 (517)
T PRK00960 379 IRDELLKYAHILAEKLDLEYWREVGDDPFYLEGRGLEDRGIEFPDVPKYEMELWLPYRGDERKWVAVTSANVHGTHFVEG 458 (517)
T ss_pred HHHHHHHHHHHHHHHcCCCceEEecccccccccCccccccccCccccceeEEEEecCccCCCCEEEEEeeeeccchhhHh
Confidence 9999999999999999999 99999 899999999999999999999 889999999999999999999
Q ss_pred ccceeccCCCc-cccccccchhheeheeccccCCCeeEecccccccccc
Q psy11602 161 LLVRYGQTKQK-IYATACATTRVICAILETHQTETGVRIPDCLRKFVPA 208 (1083)
Q Consensus 161 l~i~y~~~~~~-~n~tg~a~~Rli~Alle~~~~~~Gi~lP~~L~p~~~~ 208 (1083)
++|+|.+.+.. .||+|+|++|+|+|||+||+.+.| .||++|+++++.
T Consensus 459 fnIk~~~g~~~hTnctG~g~eR~l~AlLe~hG~d~~-~wPe~~r~~~~~ 506 (517)
T PRK00960 459 FNIKDYKGRKLWTGCTGYGLERWVIGFLAQKGFDPE-NWPEEIRKRVGE 506 (517)
T ss_pred hCcccCCCCeEeecceeeHHHHHHHHHHHhcCCCCC-cCCHHHHHhhcC
Confidence 99998643322 699999999999999999999998 999999999954
No 30
>TIGR00408 proS_fam_I prolyl-tRNA synthetase, family I. Prolyl-tRNA synthetase is a class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes tRNA synthetases for Gly, His, Ser, and Pro. The prolyl-tRNA synthetases are divided into two widely divergent families. This family includes the archaeal enzyme, the Pro-specific domain of a human multifunctional tRNA ligase, and the enzyme from the spirochete Borrelia burgdorferi. The other family includes enzymes from Escherichia coli, Bacillus subtilis, Synechocystis PCC6803, and one of the two prolyL-tRNA synthetases of Saccharomyces cerevisiae.
Probab=99.97 E-value=3e-32 Score=322.74 Aligned_cols=182 Identities=19% Similarity=0.235 Sum_probs=170.6
Q ss_pred CCCeeEecCChHHHHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHHHHHHH
Q psy11602 18 LDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESWKMLD 97 (1083)
Q Consensus 18 ~~~~~L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s~~~~~ 97 (1083)
+++++|+||+|++++.+|++|+.||++||+++||++++||+|. ++++||+|+|||+|+|+|+++.+. ++|++.+.
T Consensus 97 ~e~l~LrPt~e~~i~~~~~~~i~S~rdLPlr~~q~~~vfR~E~----~~~~gl~R~rEF~~~e~h~~~~~~-e~a~~e~~ 171 (472)
T TIGR00408 97 DEPLALRPTSETAMYPMFKKWVKSYTDLPLKINQWVNVFRYET----KHTRPFLRTREFTWQEAHTAHATA-EEAEEQVL 171 (472)
T ss_pred CCcEEEeCCCcHHHHHHHhccccChhhcCHHHhheeeeecCCC----CCCCCcceeeeeehhhhhhhhCCH-HHHHHHHH
Confidence 4789999999999999999999999999999999999999999 668999999999999999877777 78999999
Q ss_pred HHHHHHHHHHH-HcCCceEEEEeccCCCCcccceeEeEEEEecCCCceeEEEEcCCCchhhhhcccceeccCCCc-----
Q psy11602 98 EMIQNSEEFYA-DLGIAYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQSRRLLVRYGQTKQK----- 171 (1083)
Q Consensus 98 ~~~~~y~~if~-~LgLpyrvv~~~sgdlg~~as~~~diE~~~P~~~~~~ev~s~s~cgdyqs~rl~i~y~~~~~~----- 171 (1083)
.++++|.+||+ .|||||+++..+++++++++.+++|+|+|||+ +++.|+++++++|+++|++|+|+|.+.++.
T Consensus 172 ~~l~~y~~i~~~~lglp~~~~~~~~~ek~~ga~~~~~~e~~~~d-gr~~q~~t~~~Lg~~~sk~f~i~y~~~~g~~~~~h 250 (472)
T TIGR00408 172 RALDIYKEFIENSLAIPYFVGRKPEWEKFAGAEYTWAFETIMPD-GRTLQIATSHNLGQNFAKTFEIKFETPTGDKEYAY 250 (472)
T ss_pred HHHHHHHHHHHhccCCeEEEEecCchhhcCCccceEEEeEEEcC-CCEEEEeeeecccccccHhcCCEEECCCCCEEeeE
Confidence 99999999998 99999999999999999999999999999997 578999999999999999999999987764
Q ss_pred cccccccchhheeheeccccCCCeeEecccccccc
Q psy11602 172 IYATACATTRVICAILETHQTETGVRIPDCLRKFV 206 (1083)
Q Consensus 172 ~n~tg~a~~Rli~Alle~~~~~~Gi~lP~~L~p~~ 206 (1083)
++++|++ +|+|+|||++|+++.|++||..++|++
T Consensus 251 ~~s~Gi~-eRli~~lie~~~d~~gl~~P~~iaP~q 284 (472)
T TIGR00408 251 QTSYGIS-TRVIGALIAIHSDEKGLVLPPRVAPIQ 284 (472)
T ss_pred EccccHH-HHHHHHHHHHhCCCCceeeChhhCcce
Confidence 4555654 999999999999999999999999998
No 31
>cd00778 ProRS_core_arch_euk Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. This subfamily contains the core domain of ProRS from archaea, the cytoplasm of eukaryotes and some bacteria.
Probab=99.97 E-value=7.7e-32 Score=297.13 Aligned_cols=214 Identities=20% Similarity=0.178 Sum_probs=174.2
Q ss_pred CeeEecccccccccccccCCCCccccccCcccchHHHHHHhhhhcccchhhhhhhhhccccccccccCceEeeecc----
Q psy11602 194 TGVRIPDCLRKFVPAVYLNEAGEIPFVKTAPIDEEETKKQKKQKEGMKKKLTMSLFSQVGSHGRDTRGIFRVHQFE---- 269 (1083)
Q Consensus 194 ~Gi~lP~~L~p~~~~~~~~~~G~~pv~~P~~i~~d~~~~~~~k~~~~k~~~~~~~~~e~g~h~~dl~~i~Rv~qfd---- 269 (1083)
.|.++-.+|..++.+.+. ..||.+|.+|+++..+.... ..++...+.+ .+|++...+
T Consensus 30 ~g~~l~~~l~~~~~~~~~-~~G~~ev~~P~l~~~~~~~~---------------~sg~~~~f~~---~~f~~~~~~~~~~ 90 (261)
T cd00778 30 YGYAIWENIQKILDKEIK-ETGHENVYFPLLIPESELEK---------------EKEHIEGFAP---EVAWVTHGGLEEL 90 (261)
T ss_pred cHHHHHHHHHHHHHHHHH-HcCCEEEECCccccHHHhhh---------------hhcchhhcCc---ceEEEEecCCccc
Confidence 356666788888888874 78999999999999555421 1233444444 466654321
Q ss_pred -------ceEEEEeeCCCC--Ccchhhhh-hhhcccccccc-cccCcCceeEEEeeeEEE-EEEeCCCchhHHHHHHHHH
Q psy11602 270 -------KVEQFVLTSPHD--DESWKMLD-EMIQNSEEFYA-DLDTRGIFRVHQFEKVEQ-FVLTSPHDDESWKTLDEMI 337 (1083)
Q Consensus 270 -------~~~~~~~~~~~~--~~s~~~~~-~~~~~~~~~~~-~~~trGl~Rvhqf~kvE~-f~~~~~~~~~s~~~~e~~~ 337 (1083)
++....++.++. --|+++|| ++++...|||+ .++++||+|+|||.|+|+ +.+|++ |+|.+.+++|+
T Consensus 91 ~~~~~L~Pt~e~~~~~~~~~~i~s~r~LPlr~~~~~~~fR~E~~~~~Gl~R~reF~~~d~h~~~~~~--e~~~~~~~~~~ 168 (261)
T cd00778 91 EEPLALRPTSETAIYPMFSKWIRSYRDLPLKINQWVNVFRWETKTTRPFLRTREFLWQEGHTAHATE--EEAEEEVLQIL 168 (261)
T ss_pred CCcEEEcCCCCHHHHHHHHhhccchhhcCHHHHhhhhhccCCCCCCCceeEeeeeeeeceeeccCCH--HHHHHHHHHHH
Confidence 111112221111 24789999 99999999999 456799999999999999 678888 78999999999
Q ss_pred HHHHHHHHHh-CCcEEEEeccCCCcchhhhceeeEEEeeCCCCcEEeeecccCcccccccccceEEecccCCCCceeeEE
Q psy11602 338 QNSEEFYADL-GIAYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLAYQSRRLLVRYGQTKKMNEKIEFVH 416 (1083)
Q Consensus 338 ~~~e~~~~~L-~lpyRvv~~~~~dl~~~a~~~~DiE~w~P~~~~y~Ev~S~sn~~d~qarrl~iry~~~~~~~~~~~~~h 416 (1083)
+++++||+.| |||||++.+|++|++++|.+++||||||| +|+|+||+|||||+||||+|++|+|++. +++..+||
T Consensus 169 ~~~~~i~~~llgl~~~~~~~~~~d~~~~a~~~~~ie~~~p-~~~~~ev~s~~~l~~~~s~r~~i~y~~~---~g~~~~~h 244 (261)
T cd00778 169 DLYKEFYEDLLAIPVVKGRKTEWEKFAGADYTYTIEAMMP-DGRALQSGTSHNLGQNFSKAFDIKYQDK---DGQKEYVH 244 (261)
T ss_pred HHHHHHHHHhCCCeEEEecCCccccCCCCccceEEEEEee-CCCEEEEEeccccccccchhcCCEEECC---CCCCcCcE
Confidence 9999999999 99999999999999999999999999999 9999999999999999999999999975 45678999
Q ss_pred eecccccchhHHHHHHHh
Q psy11602 417 MLNATACATTRVICAILE 434 (1083)
Q Consensus 417 tln~t~~a~~R~i~ailE 434 (1083)
| |++| +++|+|+|||-
T Consensus 245 ~-~~~g-~~~R~i~ali~ 260 (261)
T cd00778 245 Q-TSWG-ISTRLIGAIIM 260 (261)
T ss_pred E-eccc-HHHHHHHHHHh
Confidence 9 9998 77999999984
No 32
>KOG0955|consensus
Probab=99.95 E-value=1.4e-29 Score=312.71 Aligned_cols=170 Identities=31% Similarity=0.699 Sum_probs=145.2
Q ss_pred cCCCCCccccccCCCCCCCCCcEEEcccCCcccccccccccccCCCcccCCCCCCCCcccccccCCCCC-CceeecCCCC
Q psy11602 686 SKFSKILVCCVCLGERSDDVNEIVECDSCGVTVHEGCYGVQDTASISSTVSSCSTEPWFCESCRAGIAE-PTCELCPNFG 764 (1083)
Q Consensus 686 ~~~~~~~~C~VC~~~~~~~~n~iv~Cd~C~i~VH~~CYGv~~~~~~~~~~~~~~~~~W~Cd~C~~~~~~-~~C~LCp~~g 764 (1083)
...+++..|+||.+.+..+.|.|||||+|+++|||.|||+..+ |+|.|+|+.|...... ..|+|||.
T Consensus 214 ~~~~~D~~C~iC~~~~~~n~n~ivfCD~Cnl~VHq~Cygi~~i----------peg~WlCr~Cl~s~~~~v~c~~cp~-- 281 (1051)
T KOG0955|consen 214 ALLEEDAVCCICLDGECQNSNVIVFCDGCNLAVHQECYGIPFI----------PEGQWLCRRCLQSPQRPVRCLLCPS-- 281 (1051)
T ss_pred cccCCCccceeecccccCCCceEEEcCCCcchhhhhccCCCCC----------CCCcEeehhhccCcCcccceEeccC--
Confidence 3457888999999999999999999999999999999997665 7899999999998755 48999999
Q ss_pred ccccccccccccccchhhhhhhhccccccccCCCCCCCCCCcceeccCCceeecccccccCCcEEecccccCceeee-cC
Q psy11602 765 ENHLRGLFENIKNGHAQRDRMRYHACHLRDSRDSSDGDRGGIFKETDVGKWVHLVCALYIPGVAFGEVDRLSNVTLF-EM 843 (1083)
Q Consensus 765 ~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~galK~t~~~~WvHv~CAlw~pev~f~~~~~~~pv~~~-~i 843 (1083)
.+||||+|++|+|+||+||+|+|||.|++...|+||+.+ .|
T Consensus 282 --------------------------------------~~gAFkqt~dgrw~Hv~caiwipev~F~nt~~~E~I~~i~~i 323 (1051)
T KOG0955|consen 282 --------------------------------------KGGAFKQTDDGRWAHVVCAIWIPEVSFANTVFLEPIDSIENI 323 (1051)
T ss_pred --------------------------------------CCCcceeccCCceeeeehhhcccccccccchhhccccchhcC
Confidence 899999999999999999999999999999999999987 69
Q ss_pred ccCCcCCCccccCCCCCCCCceeEEeCCCCCCccceeceeeccCCCC-----------ccchhhhhHHhhhhccCCC
Q psy11602 844 PYSRWGAKSCALCPDESYARTELALQSPPVNCVPTLLVYMEVVFPQP-----------PQRKLGKYKVKYVDMKSLR 909 (1083)
Q Consensus 844 p~~r~~~~~C~iC~~~~~~~~GaciqC~~~~C~~~fH~~~~~~~~~~-----------~~~~~~~~r~~y~~~~~~~ 909 (1083)
|.+||.+ .|++|+.. +.|+||||+..+|..+||++++...+.- ++.-....+..||..|.++
T Consensus 324 ~~aRwkL-~cy~cK~~---~~gaciqcs~~~c~~a~hvtca~~agl~m~~~~~~~~s~~~~s~~v~~~syC~~H~pp 396 (1051)
T KOG0955|consen 324 PPARWKL-TCYICKQK---GLGACIQCSKANCYTAFHVTCARRAGLYMKSNTVKELSKNGTSQSVNKISYCDKHTPP 396 (1051)
T ss_pred cHhhhhc-eeeeeccC---CCCcceecchhhhhhhhhhhhHhhcCceEeecccccccccccccccceeeeccCCCCc
Confidence 9999985 99999986 3599999999999999999655433311 1111223456788888654
No 33
>COG5141 PHD zinc finger-containing protein [General function prediction only]
Probab=99.95 E-value=9.2e-30 Score=283.78 Aligned_cols=140 Identities=30% Similarity=0.716 Sum_probs=131.0
Q ss_pred CCccccccCCCCCCCCCcEEEcccCCcccccccccccccCCCcccCCCCCCCCcccccccCCCCCCc-eeecCCCCcccc
Q psy11602 690 KILVCCVCLGERSDDVNEIVECDSCGVTVHEGCYGVQDTASISSTVSSCSTEPWFCESCRAGIAEPT-CELCPNFGENHL 768 (1083)
Q Consensus 690 ~~~~C~VC~~~~~~~~n~iv~Cd~C~i~VH~~CYGv~~~~~~~~~~~~~~~~~W~Cd~C~~~~~~~~-C~LCp~~g~~~~ 768 (1083)
-+..|.+|.+.++++.|.||+||+|.++|||+|||+..+ |+|.|+|+.|..+..+.. |.+||.
T Consensus 192 ~d~~C~~c~~t~~eN~naiVfCdgC~i~VHq~CYGI~f~----------peG~WlCrkCi~~~~~i~~C~fCps------ 255 (669)
T COG5141 192 FDDICTKCTSTHNENSNAIVFCDGCEICVHQSCYGIQFL----------PEGFWLCRKCIYGEYQIRCCSFCPS------ 255 (669)
T ss_pred hhhhhHhccccccCCcceEEEecCcchhhhhhcccceec----------CcchhhhhhhcccccceeEEEeccC------
Confidence 467999999999999999999999999999999999988 789999999999987776 889999
Q ss_pred ccccccccccchhhhhhhhccccccccCCCCCCCCCCcceeccCCceeecccccccCCcEEecccccCceeee-cCccCC
Q psy11602 769 RGLFENIKNGHAQRDRMRYHACHLRDSRDSSDGDRGGIFKETDVGKWVHLVCALYIPGVAFGEVDRLSNVTLF-EMPYSR 847 (1083)
Q Consensus 769 ~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~galK~t~~~~WvHv~CAlw~pev~f~~~~~~~pv~~~-~ip~~r 847 (1083)
..||||.|.+|+|+|++||+|+|++.|++...|.||+++ +++.+|
T Consensus 256 ----------------------------------~dGaFkqT~dgrW~H~iCA~~~pelsF~~l~~~dpI~~i~sVs~sr 301 (669)
T COG5141 256 ----------------------------------SDGAFKQTSDGRWGHVICAMFNPELSFGHLLSKDPIDNIASVSSSR 301 (669)
T ss_pred ----------------------------------CCCceeeccCCchHhHhHHHhcchhccccccccchhhhhcccchhh
Confidence 799999999999999999999999999999999999977 799999
Q ss_pred cCCCccccCCCCCCCCceeEEeCCCCCCccceeceee
Q psy11602 848 WGAKSCALCPDESYARTELALQSPPVNCVPTLLVYME 884 (1083)
Q Consensus 848 ~~~~~C~iC~~~~~~~~GaciqC~~~~C~~~fH~~~~ 884 (1083)
|.+ .|.||+.. .|+||||...+|.+++|+.++
T Consensus 302 wkl-~C~iCk~~----~GtcIqCs~~nC~~aYHVtCA 333 (669)
T COG5141 302 WKL-GCLICKEF----GGTCIQCSYFNCTRAYHVTCA 333 (669)
T ss_pred Hhh-eeeEEccc----Ccceeeecccchhhhhhhhhh
Confidence 995 89999985 999999999999999999443
No 34
>PRK12325 prolyl-tRNA synthetase; Provisional
Probab=99.95 E-value=5.1e-28 Score=284.89 Aligned_cols=189 Identities=15% Similarity=0.214 Sum_probs=170.1
Q ss_pred CCCCCCCCeeEecCChHHHHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHH
Q psy11602 13 PEKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDES 92 (1083)
Q Consensus 13 ~~dr~~~~~~L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s 92 (1083)
++|+.+++++|+||+|+.++.++++++.||++||+|+||++++||+|+ +++.||+|+|||+|.|+|+|+.+. +++
T Consensus 96 ~~d~~~~~~~L~Pt~e~~~~~~~~~~~~syrdLPlrl~q~~~~fR~E~----~~~~GL~R~reF~~~D~h~f~~~~-~~a 170 (439)
T PRK12325 96 IKDRHDREMLYGPTNEEMITDIFRSYVKSYKDLPLNLYHIQWKFRDEI----RPRFGVMRGREFLMKDAYSFDLDE-EGA 170 (439)
T ss_pred EecCCCCEEEEcCCCcHHHHHHHHHHhhhchhhchHheEecCEecCCC----CCCCCccccceEeEeccEEEeCCH-HHH
Confidence 457788899999999999999999999999999999999999999998 556799999999999999999998 789
Q ss_pred HHHHHHHHHHHHHHHHHcCCceEEEEeccCCCCcccceeEeE-------EEEe---------------------------
Q psy11602 93 WKMLDEMIQNSEEFYADLGIAYRVVNIVSGALNHAAAKKLDL-------EAWF--------------------------- 138 (1083)
Q Consensus 93 ~~~~~~~~~~y~~if~~LgLpyrvv~~~sgdlg~~as~~~di-------E~~~--------------------------- 138 (1083)
.+.+.+++++|.+||+.|||+|+.|.+++|.+|+..+|+|.+ +.|.
T Consensus 171 ~~~~~~~~~~~~~i~~~lgl~~~~v~~~~~~~gg~~s~ef~~~~~~Ge~~~~~c~~~~~~~~~~~~~~~~~~~l~~~l~~ 250 (439)
T PRK12325 171 RHSYNRMFVAYLRTFARLGLKAIPMRADTGPIGGDLSHEFIILAETGESTVFYDKDFLDLLVPGEDIDFDVADLQPIVDE 250 (439)
T ss_pred HHHHHHHHHHHHHHHHHcCCceEEEEEccCCCCCCcceeeEeecCCCCceEEEcCCchhhccCCCcccCCHHHHHHHHhh
Confidence 999999999999999999999999999999999999997732 1111
Q ss_pred -----------cC-------------CCceeEEEEcCCCchhhhhcccceeccCCCc-----cccccccchhheeheecc
Q psy11602 139 -----------PG-------------SGAFRELVSCSNCLDYQSRRLLVRYGQTKQK-----IYATACATTRVICAILET 189 (1083)
Q Consensus 139 -----------P~-------------~~~~~ev~s~s~cgdyqs~rl~i~y~~~~~~-----~n~tg~a~~Rli~Alle~ 189 (1083)
++ ..+-+||+++.++|+.+|++|+++|.+.++. +++.|++++|+|++|+|+
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ievg~~~~lg~~ys~~f~~~y~d~~g~~~~i~~~~~GiGieRli~~l~e~ 330 (439)
T PRK12325 251 WTSLYAATEEMHDEAAFAAVPEERRLSARGIEVGHIFYFGTKYSEPMNAKVQGPDGKEVPVHMGSYGIGVSRLVAAIIEA 330 (439)
T ss_pred hcccccchhhhhccCCCCcCCCcceeecceEEEEeeecCcccccHhcCCEEECCCCCEEeEEEeeeECCHHHHHHHHHHH
Confidence 11 1122489999999999999999999988775 999999999999999999
Q ss_pred ccCCCeeEecccccccc
Q psy11602 190 HQTETGVRIPDCLRKFV 206 (1083)
Q Consensus 190 ~~~~~Gi~lP~~L~p~~ 206 (1083)
|.|+.|++||..++|+.
T Consensus 331 ~~d~~g~~~P~~iaP~q 347 (439)
T PRK12325 331 SHDDKGIIWPESVAPFK 347 (439)
T ss_pred hCccCCCcCCCCcCCeE
Confidence 99999999999999997
No 35
>TIGR00415 serS_MJ seryl-tRNA synthetase, Methanococcus jannaschii family. The seryl-tRNA synthetases from a few of the Archaea, represented by this model, are very different from the set of mutually more closely related seryl-tRNA synthetases from Eubacteria, Eukaryotes, and other Archaea. Although distantly homologous, the present set differs enough not to be recognized by the pfam model tRNA-synt_2b that recognizes the remainder of seryl-tRNA synthetases among oither class II amino-acyl tRNA synthetases.
Probab=99.94 E-value=6.7e-27 Score=271.35 Aligned_cols=183 Identities=16% Similarity=0.202 Sum_probs=156.6
Q ss_pred CCeeEecCChHHHHHHHhcccCCCCCCCceEeeec-cccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHHHHHHH
Q psy11602 19 DDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVS-TCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESWKMLD 97 (1083)
Q Consensus 19 ~~~~L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~-~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s~~~~~ 97 (1083)
.+++|+||||+++++++++|++++++||++++|++ +|||+|+|+ ++||+|+|||.|+|++.+++++ +|++.++
T Consensus 308 ~~~vL~PTSE~ply~~~a~~Ils~~dLPlk~~~~s~~CFR~EaGs----trGL~RvhEF~kvE~v~~~tpE--ea~e~~e 381 (520)
T TIGR00415 308 PGYVIAPAQCEPFYQFFEGEVIDAEDKPIKFFDRSGWTYRWEAGG----AKGLDRVHEFLRVECVWIAEPE--ETEEIRD 381 (520)
T ss_pred CceEEeCccHHHHHHHHhccccChhhCCeeEEEEecCeEeCCCCC----CCCCceeeEEEEEEEEEEeCHH--HHHHHHH
Confidence 47899999999999999999999999999999955 799999964 6999999999999999988775 5999999
Q ss_pred HHHHHHHHHHHHcCCceEEEEec-----------cCCCCcccceeEeEEEEecCCCce---eEEEEcCCCchhhhhcccc
Q psy11602 98 EMIQNSEEFYADLGIAYRVVNIV-----------SGALNHAAAKKLDLEAWFPGSGAF---RELVSCSNCLDYQSRRLLV 163 (1083)
Q Consensus 98 ~~~~~y~~if~~LgLpyrvv~~~-----------sgdlg~~as~~~diE~~~P~~~~~---~ev~s~s~cgdyqs~rl~i 163 (1083)
+|++.|+.|++.|+||||++.++ +++|+++++.+||+|+|+|+...| ..+.|+...||+||++|+|
T Consensus 382 ~mle~~~~~l~~L~Lpyrv~~adDPFf~~g~k~~~~dl~F~~a~KyDlevwiP~~~~~~~g~AlqS~n~Hg~hF~k~F~I 461 (520)
T TIGR00415 382 KTLELAEDAADELDLEWWTEVGDDPFYLEGRKKEDRGIEFPDVPKYEMRLSLPGIEDERKGVAVTSANVHGTHFIEGFRI 461 (520)
T ss_pred HHHHHHHHHHHHcCCCeEEeecCCcccccccCcccccccCcccceEEEEEEEccccCCCCCcEEEEeechhcccccccCc
Confidence 99999999999999999999755 677999999999999999988753 4556666669999999999
Q ss_pred eeccCCCc-cccccccchhheeheeccccCCCeeEecccccccccc
Q psy11602 164 RYGQTKQK-IYATACATTRVICAILETHQTETGVRIPDCLRKFVPA 208 (1083)
Q Consensus 164 ~y~~~~~~-~n~tg~a~~Rli~Alle~~~~~~Gi~lP~~L~p~~~~ 208 (1083)
+-.+.... .+|.|++++|+|.|+|.+|+-+ -..||..++.-++.
T Consensus 462 ~~~~~~~a~ttC~G~gleR~i~Ali~~HG~d-~~~Wp~~vr~~~~~ 506 (520)
T TIGR00415 462 KDAKGLNIWTGCTGIGISRWIVGFLAQKGFE-FDDWHDFIGEKIEG 506 (520)
T ss_pred ccCCCCeEEEeeeeccHHHHHHHHHHHhCCC-hhhCCHHHHHHhcc
Confidence 83222222 6677999999999999998764 25799887776643
No 36
>KOG4163|consensus
Probab=99.94 E-value=5.6e-28 Score=267.86 Aligned_cols=232 Identities=16% Similarity=0.147 Sum_probs=199.6
Q ss_pred CCCCCcccCCCCCCCCCCCCeeEecCChHHHHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEE
Q psy11602 1 VIGKGEKVGDSAPEKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVE 80 (1083)
Q Consensus 1 v~~~g~e~~~~~~~dr~~~~~~L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e 80 (1083)
||-+|+.+ |+ +..+++||||+.|+.+|++||.|||||||+|.|+.++-|+|. +++.+++|.|||.+.|
T Consensus 148 VTr~G~se----Le----epiaiRPTSETvmyp~yakWi~ShRDLPlkLNQW~nVvRWEf----k~p~PFlRtrEFLWQE 215 (551)
T KOG4163|consen 148 VTRAGNSE----LE----EPIAIRPTSETVMYPYYAKWIQSHRDLPLKLNQWCNVVRWEF----KHPQPFLRTREFLWQE 215 (551)
T ss_pred EEecCCcc----cc----cceeeccCccceecHHHHHHHHhhccCchhhhhhhhheeeec----cCCCcchhhhHHHHhc
Confidence 56666666 44 789999999999999999999999999999999999999999 8899999999999999
Q ss_pred EEEEeCCCchHHHHHHHHHHHHHHHHHH-HcCCceEEEEeccCCCCcccceeEeEEEEecCCCceeEEEEcCCCchhhhh
Q psy11602 81 QFVLTSPHDDESWKMLDEMIQNSEEFYA-DLGIAYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQSR 159 (1083)
Q Consensus 81 ~~~~~~~~~e~s~~~~~~~~~~y~~if~-~LgLpyrvv~~~sgdlg~~as~~~diE~~~P~~~~~~ev~s~s~cgdyqs~ 159 (1083)
.++.+... ++|++..-++++.|.+||. .|.+|+........+.++++.+++.||+++|..++-++-++.|++|++||+
T Consensus 216 GHTAfat~-~eA~eEvlqiLdlYa~vy~ellAiPVvkGrKse~EkFaGgd~TttvEa~i~~~GrgiQgaTSH~LGQNFSk 294 (551)
T KOG4163|consen 216 GHTAFATP-EEAEEEVLQILDLYARVYEELLAIPVVKGRKSEKEKFAGGDYTTTVEAFIPCSGRGIQGATSHHLGQNFSK 294 (551)
T ss_pred CcchhCCH-hHHHHHHHHHHHHHHHHHHhhhccccccCccchhhhccCCcceEEEeeeeccccccccccchhhhhHHHHH
Confidence 99998888 7899999999999999987 889999999999999999999999999999999999999999999999999
Q ss_pred cccceeccC-CCc-----cccccccchhheeheeccccCCCeeEecccccccccccccCCCCccccccCcccchHHHHHH
Q psy11602 160 RLLVRYGQT-KQK-----IYATACATTRVICAILETHQTETGVRIPDCLRKFVPAVYLNEAGEIPFVKTAPIDEEETKKQ 233 (1083)
Q Consensus 160 rl~i~y~~~-~~~-----~n~tg~a~~Rli~Alle~~~~~~Gi~lP~~L~p~~~~~~~~~~G~~pv~~P~~i~~d~~~~~ 233 (1083)
.|+|.|.+. .+. -|+.|++ +|.|.+++..|+|+.|++||+.+++++ + |+.|+.|....++.+
T Consensus 295 mF~i~~ed~~~g~~~fv~QnSWg~s-TRtiGvmiM~HgDdkGLvLPPrVA~vQ-----v------VvvP~git~~~s~~~ 362 (551)
T KOG4163|consen 295 MFEIVFEDPGEGEKEFVWQNSWGLS-TRTIGVMIMTHGDDKGLVLPPRVAPVQ-----V------VVVPVGITDATSEED 362 (551)
T ss_pred hhceeecCCCccchhheeecccccc-cceeeEEEEEecCCcccccCCcccceE-----E------EEEeccccccCchHH
Confidence 999999987 333 6666766 999999999999999999999999999 4 888999874444333
Q ss_pred hhhhcccchhhhhhhhhccccccccccCc-eEeeec
Q psy11602 234 KKQKEGMKKKLTMSLFSQVGSHGRDTRGI-FRVHQF 268 (1083)
Q Consensus 234 ~~k~~~~k~~~~~~~~~e~g~h~~dl~~i-~Rv~qf 268 (1083)
. ......+.+....|.+. +|++.+
T Consensus 363 ~-----------~~l~~a~~~v~~~L~~~giR~~~D 387 (551)
T KOG4163|consen 363 K-----------QELLDACSAVESRLLGAGIRAEAD 387 (551)
T ss_pred H-----------HHHHHHHHHHHHHHhccCceEeec
Confidence 3 22333444444444444 555553
No 37
>PRK08661 prolyl-tRNA synthetase; Provisional
Probab=99.91 E-value=9.4e-25 Score=259.46 Aligned_cols=230 Identities=20% Similarity=0.223 Sum_probs=186.8
Q ss_pred eeEecccccccccccccCCCCccccccCcccchHHHHHHhhhhcccchhhhhhhhhccccccccccCceEeeecc--ce-
Q psy11602 195 GVRIPDCLRKFVPAVYLNEAGEIPFVKTAPIDEEETKKQKKQKEGMKKKLTMSLFSQVGSHGRDTRGIFRVHQFE--KV- 271 (1083)
Q Consensus 195 Gi~lP~~L~p~~~~~~~~~~G~~pv~~P~~i~~d~~~~~~~k~~~~k~~~~~~~~~e~g~h~~dl~~i~Rv~qfd--~~- 271 (1083)
|..|-..|..++.+.+. ..||.+|..|.++..+...+. .++...+.. .+|++...+ +.
T Consensus 43 g~~i~~~i~~~~~~~~~-~~G~~ev~~P~l~~~~~~~~~---------------~~h~~~f~~---e~~~v~~~~~~~~~ 103 (477)
T PRK08661 43 GYAIWENIQKILDKLFK-ETGHENVYFPLLIPESLLEKE---------------KEHVEGFAP---EVAWVTHGGGEKLE 103 (477)
T ss_pred HHHHHHHHHHHHHHHHH-HcCCEEEECCccCCHHHHhhh---------------cCchhhccc---ccEEEEccCCCccC
Confidence 44445677888777774 789999999999995554221 233333344 355553321 11
Q ss_pred EEEEeeCCCC-----------Ccchhhhh-hhhcccccccccccCcCceeEEEeeeEEEE-EEeCCCchhHHHHHHHHHH
Q psy11602 272 EQFVLTSPHD-----------DESWKMLD-EMIQNSEEFYADLDTRGIFRVHQFEKVEQF-VLTSPHDDESWKTLDEMIQ 338 (1083)
Q Consensus 272 ~~~~~~~~~~-----------~~s~~~~~-~~~~~~~~~~~~~~trGl~Rvhqf~kvE~f-~~~~~~~~~s~~~~e~~~~ 338 (1083)
+.+. ..|.. -.||++|| ++++..++||+...++||+|+|||.+.|+- .++.+ ++|.+.+++|++
T Consensus 104 e~l~-LrPtsE~~i~~~~~~~i~SyrdLPlrl~q~~~vfR~E~~~rgl~R~rEF~~~E~h~~~~~~--eea~~e~~~~l~ 180 (477)
T PRK08661 104 EKLA-LRPTSETIIYPMYKKWIQSYRDLPLLYNQWVNVVRWETKTRPFLRTREFLWQEGHTAHATE--EEAEEETLEMLE 180 (477)
T ss_pred ceEE-EecCCcHHHHHHHHhhhcchhhcCHHHhcccceeeCCCCCCCcceeeeEEEcceeeeeCCH--HHHHHHHHHHHH
Confidence 1222 22211 34899999 999999999998889999999999999994 45666 789999999999
Q ss_pred HHHHHH-HHhCCcEEEEeccCCCcchhhhceeeEEEeeCCCCcEEeeecccCcccccccccceEEecccCCCCceeeEEe
Q psy11602 339 NSEEFY-ADLGIAYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLAYQSRRLLVRYGQTKKMNEKIEFVHM 417 (1083)
Q Consensus 339 ~~e~~~-~~L~lpyRvv~~~~~dl~~~a~~~~DiE~w~P~~~~y~Ev~S~sn~~d~qarrl~iry~~~~~~~~~~~~~ht 417 (1083)
.+.+|| +.|||||+++..+.+|++++|.++||||+|||. |++.|+++++++++++|+|++|+|.+. +++..|||+
T Consensus 181 ~y~~i~~~~Lglp~~~~~~~~~ekf~ga~~~~~ie~~~~d-gr~~q~gt~~~Lg~~~s~~f~i~y~d~---~g~~~~v~~ 256 (477)
T PRK08661 181 IYKEFFEDYLAIPVIIGKKTEWEKFAGADYTYTIEAMMPD-GKALQAGTSHYLGQNFAKAFDIKFQDK---DGKLEYVHQ 256 (477)
T ss_pred HHHHHHHHhcCCeEEEEecChHHhhCCCcceeEEEEEeCC-CCEEEEEEecccccchhHhcCCEEECC---CCCEeeeEE
Confidence 999999 999999999999999999999999999999995 999999999999999999999999876 567889999
Q ss_pred ecccccchhHHHHHHHhhccCCCceecCccccccC
Q psy11602 418 LNATACATTRVICAILETHQTETGVRIPDCLRKFV 452 (1083)
Q Consensus 418 ln~t~~a~~R~i~ailEn~q~~~Gi~iP~~L~py~ 452 (1083)
. +.|+. +|+|+||||+|+++.|+++|..++|+-
T Consensus 257 ~-s~G~~-~R~i~alie~~~D~~Gl~lP~~iAP~q 289 (477)
T PRK08661 257 T-SWGVS-TRLIGALIMTHGDDKGLVLPPKIAPIQ 289 (477)
T ss_pred e-cccHH-HHHHHHHHHHhCccCCCccCcccCCCe
Confidence 7 67765 999999999999999999999999984
No 38
>TIGR00415 serS_MJ seryl-tRNA synthetase, Methanococcus jannaschii family. The seryl-tRNA synthetases from a few of the Archaea, represented by this model, are very different from the set of mutually more closely related seryl-tRNA synthetases from Eubacteria, Eukaryotes, and other Archaea. Although distantly homologous, the present set differs enough not to be recognized by the pfam model tRNA-synt_2b that recognizes the remainder of seryl-tRNA synthetases among oither class II amino-acyl tRNA synthetases.
Probab=99.91 E-value=8.9e-25 Score=253.74 Aligned_cols=231 Identities=13% Similarity=0.101 Sum_probs=177.6
Q ss_pred CeeEecccccccccccccCCCCccccccCcccchHHHHHHhhhhcccchhhhhhhhhccccccccccCceEee-------
Q psy11602 194 TGVRIPDCLRKFVPAVYLNEAGEIPFVKTAPIDEEETKKQKKQKEGMKKKLTMSLFSQVGSHGRDTRGIFRVH------- 266 (1083)
Q Consensus 194 ~Gi~lP~~L~p~~~~~~~~~~G~~pv~~P~~i~~d~~~~~~~k~~~~k~~~~~~~~~e~g~h~~dl~~i~Rv~------- 266 (1083)
.|+.|-++|..|+.+.+....||.++.+|.+|..+.+.+.+ +.+.+.+ ++|.+.
T Consensus 221 ~ga~L~rAL~~~~ld~~~~k~Gy~ev~fP~LIp~e~l~k~g----------------hl~gF~~---e~y~Vt~~~~d~d 281 (520)
T TIGR00415 221 KITALFRALEEFFIEEIVKKIGFQECLFPKLIPLDIMNKMR----------------YLEGLPE---GMYYCCAPKRDPE 281 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCeEEeCCcEecHHHHcccC----------------CCCCCch---hheEEecCCCCcc
Confidence 34556689999998766445699999999999977775553 2222222 122220
Q ss_pred ------------------------ec-----cceEEEEeeCCCCC--cchhhhh-hhhccc-ccccccc-cCcCceeEEE
Q psy11602 267 ------------------------QF-----EKVEQFVLTSPHDD--ESWKMLD-EMIQNS-EEFYADL-DTRGIFRVHQ 312 (1083)
Q Consensus 267 ------------------------qf-----d~~~~~~~~~~~~~--~s~~~~~-~~~~~~-~~~~~~~-~trGl~Rvhq 312 (1083)
.. -.++.+++...+.+ -++++|| ++++.+ .|||+.. .+|||+|+||
T Consensus 282 ~~~~f~~~~~~~~eipi~~L~~~le~~~~vL~PTSE~ply~~~a~~Ils~~dLPlk~~~~s~~CFR~EaGstrGL~RvhE 361 (520)
T TIGR00415 282 LFEEFKNELIIKKEIPIDKLKNGIKDPGYVIAPAQCEPFYQFFEGEVIDAEDKPIKFFDRSGWTYRWEAGGAKGLDRVHE 361 (520)
T ss_pred hhhccccccccccccccccccccccCCceEEeCccHHHHHHHHhccccChhhCCeeEEEEecCeEeCCCCCCCCCceeeE
Confidence 00 02222222222222 2567888 777745 6999954 5899999999
Q ss_pred eeeEEEEEEeCCCchhHHHHHHHHHHHHHHHHHHhCCcEEEEe---------cc--CCCcchhhhceeeEEEeeCCCCc-
Q psy11602 313 FEKVEQFVLTSPHDDESWKTLDEMIQNSEEFYADLGIAYRVVN---------IV--SGALNHAAAKKLDLEAWFPGSGA- 380 (1083)
Q Consensus 313 f~kvE~f~~~~~~~~~s~~~~e~~~~~~e~~~~~L~lpyRvv~---------~~--~~dl~~~a~~~~DiE~w~P~~~~- 380 (1083)
|.|+|+|.+++| |+|++++++|++++++|++.|+|||||+. ++ ++||+|++++|||+|+|||+++.
T Consensus 362 F~kvE~v~~~tp--Eea~e~~e~mle~~~~~l~~L~Lpyrv~~adDPFf~~g~k~~~~dl~F~~a~KyDlevwiP~~~~~ 439 (520)
T TIGR00415 362 FLRVECVWIAEP--EETEEIRDKTLELAEDAADELDLEWWTEVGDDPFYLEGRKKEDRGIEFPDVPKYEMRLSLPGIEDE 439 (520)
T ss_pred EEEEEEEEEeCH--HHHHHHHHHHHHHHHHHHHHcCCCeEEeecCCcccccccCcccccccCcccceEEEEEEEccccCC
Confidence 999999999999 68999999999999999999999999986 22 77899999999999999999984
Q ss_pred --EEeeecccCcccccccccceEEecccCCCCceeeEEeecccccchhHHHHHHHhhccCCCceecCccccccCCC
Q psy11602 381 --FRELVSCSNCLAYQSRRLLVRYGQTKKMNEKIEFVHMLNATACATTRVICAILETHQTETGVRIPDCLRKFVPA 454 (1083)
Q Consensus 381 --y~Ev~S~sn~~d~qarrl~iry~~~~~~~~~~~~~htln~t~~a~~R~i~ailEn~q~~~Gi~iP~~L~py~~~ 454 (1083)
.+-|.|++..+|+++++.+|+- ++.+|+||. +.|+.++|++.|+|-+|.-+- -.||+..|.-+|+
T Consensus 440 ~~g~AlqS~n~Hg~hF~k~F~I~~-------~~~~~a~tt-C~G~gleR~i~Ali~~HG~d~-~~Wp~~vr~~~~~ 506 (520)
T TIGR00415 440 RKGVAVTSANVHGTHFIEGFRIKD-------AKGLNIWTG-CTGIGISRWIVGFLAQKGFEF-DDWHDFIGEKIEG 506 (520)
T ss_pred CCCcEEEEeechhcccccccCccc-------CCCCeEEEe-eeeccHHHHHHHHHHHhCCCh-hhCCHHHHHHhcc
Confidence 5678888888999999999992 235799998 999999999999999886432 2689999888775
No 39
>PRK03991 threonyl-tRNA synthetase; Validated
Probab=99.90 E-value=8.3e-24 Score=256.49 Aligned_cols=183 Identities=19% Similarity=0.190 Sum_probs=157.1
Q ss_pred CCCeeEecCChHHHHHHHhcccCCCCCCCceEeeecc-ccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHHHHHH
Q psy11602 18 LDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVST-CFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESWKML 96 (1083)
Q Consensus 18 ~~~~~L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~~-~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s~~~~ 96 (1083)
+++++|+||+|.++..+|+++++||++||+++||+++ +||+|++ ..++||+|+|||+|.|+|+|+.+. ++|+++|
T Consensus 280 ~e~l~Lrp~~c~~~~~~~~~~~~SyrdLPlr~~e~~~~~fR~E~~---g~l~GL~RvReF~~~D~h~f~~~~-eqa~~e~ 355 (613)
T PRK03991 280 KKDLMLRFAACFGQFLMLKDMTISYKNLPLKMYELSTYSFRLEQR---GELVGLKRLRAFTMPDMHTLCKDM-EQAMEEF 355 (613)
T ss_pred CceEEEecCCCHHHHHHHhCCcCchhhCChhhheecchheeCCCC---CCCcCcccccceEeeeEEEEECCH-HHHHHHH
Confidence 4689999999999999999999999999999999999 9999984 347999999999999999999987 6899999
Q ss_pred HHHHHHHHHHHHHcCCceEEEEeccCCC-------------------------Ccccce--eEeEEEEecCCCceeEEEE
Q psy11602 97 DEMIQNSEEFYADLGIAYRVVNIVSGAL-------------------------NHAAAK--KLDLEAWFPGSGAFRELVS 149 (1083)
Q Consensus 97 ~~~~~~y~~if~~LgLpyrvv~~~sgdl-------------------------g~~as~--~~diE~~~P~~~~~~ev~s 149 (1083)
+++++.+.++|+.||+||+++.+++++. |.++.+ ++|+.+.+. .++-.++++
T Consensus 356 ~~~l~~~~~i~~~lGl~~~~~~~~t~df~~~~~~~l~~~l~~~g~~~~~~~~~g~~~~yg~kie~~~~d~-~gr~~q~~T 434 (613)
T PRK03991 356 EKQYEMILETGEDLGRDYEVAIRFTEDFYEENKDWIVELVKREGKPVLLEILPERKHYWVLKVEFAFIDS-LGRPIENPT 434 (613)
T ss_pred HHHHHHHHHHHHHcCCCeEEEecCHHHHhhhHHHHHHHHHHHcCCCEEecccCCccccCcCcEEEEEeCC-CCCEEEEee
Confidence 9999999999999999999998876543 333343 344445443 566688886
Q ss_pred cCCCchhhhhcccceeccCCCc------ccccccc-chhheeheeccccCC----CeeEecccccccc
Q psy11602 150 CSNCLDYQSRRLLVRYGQTKQK------IYATACA-TTRVICAILETHQTE----TGVRIPDCLRKFV 206 (1083)
Q Consensus 150 ~s~cgdyqs~rl~i~y~~~~~~------~n~tg~a-~~Rli~Alle~~~~~----~Gi~lP~~L~p~~ 206 (1083)
...-. ..|++|+++|.+.++. |++++++ ++|+|+||||++.++ .|++||..|+|+.
T Consensus 435 ~qld~-~~~~~f~l~y~d~~g~~~~Pviih~~~~GsieR~i~aliE~~~~~~~~g~gl~~P~~lAP~q 501 (613)
T PRK03991 435 VQIDV-ENAERFGIKYVDENGEEKYPIILHCSPTGSIERVIYALLEKAAKEEEEGKVPMLPTWLSPTQ 501 (613)
T ss_pred eecCc-ccchhCCCEEECCCCCEeeCEEEEECCEeHHHHHHHHHHHHhCCccccCceeEcCccccCce
Confidence 55444 5599999999987664 7888887 899999999999988 7899999999997
No 40
>PF00587 tRNA-synt_2b: tRNA synthetase class II core domain (G, H, P, S and T) This Prosite entry contains all class II enzymes. seryl tRNA synthetase structure; InterPro: IPR002314 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain includes the glycine, histidine, proline, threonine and serine tRNA synthetases.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 3UH0_A 3UGT_C 3UGQ_A 1B76_B 1GGM_B 1ATI_A 1ADY_C 1ADJ_C 2I4O_A 2I4M_B ....
Probab=99.89 E-value=2.7e-23 Score=215.52 Aligned_cols=122 Identities=32% Similarity=0.600 Sum_probs=114.1
Q ss_pred CCCCCCCeeEecCChHHHHHHHhcccCC-CCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHH
Q psy11602 14 EKDELDDKYLIATSEQPICAVHRDSWLP-EASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDES 92 (1083)
Q Consensus 14 ~dr~~~~~~L~pTsE~~i~~l~~~~i~s-~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s 92 (1083)
+|+.+++++|+||+|.+++.++++++.+ +++||++++|+++|||+|. ++++||+|+|||+|.|++.|+.+ +++
T Consensus 50 ~~~~~~~~~L~pt~~~~~~~~~~~~~~~~~~~LP~~~~~~g~~fR~E~----~~~~gl~R~reF~~~e~~~f~~~--~~~ 123 (173)
T PF00587_consen 50 KDRGDEEYCLRPTSEPGIYSLFKNEIRSSYRDLPLKLYQIGTCFRNEA----RPTRGLFRLREFTMDEMHIFCTP--EQS 123 (173)
T ss_dssp EETTTEEEEE-SSSHHHHHHHHHHHEEBHGGGSSEEEEEEEEEEBSSS----SSBSTTTS-SEEEEEEEEEEESS--HHH
T ss_pred eecccccEEeccccccceeeeecceeeeccccCCeEEeeccccccccc----ccccccceeeEeeeeceEEEeCC--ccc
Confidence 4556678999999999999999999999 9999999999999999999 78899999999999999999999 469
Q ss_pred HHHHHHHHHHHHHHHHHcCC-ceEEEEeccCCCCcccceeEeEEEEecCC
Q psy11602 93 WKMLDEMIQNSEEFYADLGI-AYRVVNIVSGALNHAAAKKLDLEAWFPGS 141 (1083)
Q Consensus 93 ~~~~~~~~~~y~~if~~LgL-pyrvv~~~sgdlg~~as~~~diE~~~P~~ 141 (1083)
.+.++++++.+.+||+.||| ||+++..+++++++.+++++|+|+|+|++
T Consensus 124 ~~~~~~~~~~~~~i~~~lgl~~~~~~~~~~~~~~~~~~~~~d~e~~~~~~ 173 (173)
T PF00587_consen 124 EEEFEELLELYKEILEKLGLEPYRIVLSSSGELGAYAKYEFDIEAWFPAQ 173 (173)
T ss_dssp HHHHHHHHHHHHHHHHHTTSGCEEEEEEETCTSCTTSSEEEEEEEEETCC
T ss_pred HHHHHHHHHHHHHHHHHcCCceEEEEEcCCCccCCCHHHcccHHHhCcCC
Confidence 99999999999999999999 99999999999999999999999999974
No 41
>TIGR00408 proS_fam_I prolyl-tRNA synthetase, family I. Prolyl-tRNA synthetase is a class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes tRNA synthetases for Gly, His, Ser, and Pro. The prolyl-tRNA synthetases are divided into two widely divergent families. This family includes the archaeal enzyme, the Pro-specific domain of a human multifunctional tRNA ligase, and the enzyme from the spirochete Borrelia burgdorferi. The other family includes enzymes from Escherichia coli, Bacillus subtilis, Synechocystis PCC6803, and one of the two prolyL-tRNA synthetases of Saccharomyces cerevisiae.
Probab=99.89 E-value=1.3e-23 Score=249.27 Aligned_cols=226 Identities=18% Similarity=0.212 Sum_probs=182.0
Q ss_pred ccccccccccccCCCCccccccCcccchHHHHHHhhhhcccchhhhhhhhhccccccccccCceEeeec------c----
Q psy11602 200 DCLRKFVPAVYLNEAGEIPFVKTAPIDEEETKKQKKQKEGMKKKLTMSLFSQVGSHGRDTRGIFRVHQF------E---- 269 (1083)
Q Consensus 200 ~~L~p~~~~~~~~~~G~~pv~~P~~i~~d~~~~~~~k~~~~k~~~~~~~~~e~g~h~~dl~~i~Rv~qf------d---- 269 (1083)
..|..++...+. ..||.+|..|.++..+...+.+ ++...+.. .+|++... +
T Consensus 42 ~~I~~~i~~~~~-~~G~~ev~~P~l~~~~~~~~~~---------------~h~~~f~~---e~f~v~~~g~~~~~e~l~L 102 (472)
T TIGR00408 42 KNIQKILRNILD-EIGHEEVYFPMLIPESELAKEK---------------DHIKGFEP---EVYWITHGGLSKLDEPLAL 102 (472)
T ss_pred HHHHHHHHHHHH-HcCCEEEECCccCCHHHHHhhc---------------chhhhcch---hcEEEecCCCCccCCcEEE
Confidence 455666655553 6799999999999966554322 12222223 35554331 1
Q ss_pred -ceEEEEeeCC--CCCcchhhhh-hhhccccccccccc-CcCceeEEEeeeEEE-EEEeCCCchhHHHHHHHHHHHHHHH
Q psy11602 270 -KVEQFVLTSP--HDDESWKMLD-EMIQNSEEFYADLD-TRGIFRVHQFEKVEQ-FVLTSPHDDESWKTLDEMIQNSEEF 343 (1083)
Q Consensus 270 -~~~~~~~~~~--~~~~s~~~~~-~~~~~~~~~~~~~~-trGl~Rvhqf~kvE~-f~~~~~~~~~s~~~~e~~~~~~e~~ 343 (1083)
++...+++.. ..-.||++|| ++++...+||.... ++||+|+|+|.+.|+ +.++.+ +++.+.+++|++.+++|
T Consensus 103 rPt~e~~i~~~~~~~i~S~rdLPlr~~q~~~vfR~E~~~~~gl~R~rEF~~~e~h~~~~~~--e~a~~e~~~~l~~y~~i 180 (472)
T TIGR00408 103 RPTSETAMYPMFKKWVKSYTDLPLKINQWVNVFRYETKHTRPFLRTREFTWQEAHTAHATA--EEAEEQVLRALDIYKEF 180 (472)
T ss_pred eCCCcHHHHHHHhccccChhhcCHHHhheeeeecCCCCCCCCcceeeeeehhhhhhhhCCH--HHHHHHHHHHHHHHHHH
Confidence 2222222210 1235899999 99999999999665 899999999999999 467777 78999999999999999
Q ss_pred HH-HhCCcEEEEeccCCCcchhhhceeeEEEeeCCCCcEEeeecccCcccccccccceEEecccCCCCceeeEEeecccc
Q psy11602 344 YA-DLGIAYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLAYQSRRLLVRYGQTKKMNEKIEFVHMLNATA 422 (1083)
Q Consensus 344 ~~-~L~lpyRvv~~~~~dl~~~a~~~~DiE~w~P~~~~y~Ev~S~sn~~d~qarrl~iry~~~~~~~~~~~~~htln~t~ 422 (1083)
|. .|||||+++..+.+|++++|..++|+|+|||. +++.|+++++++++++|+|++|+|.+. +++..++|+ ++.|
T Consensus 181 ~~~~lglp~~~~~~~~~ek~~ga~~~~~~e~~~~d-gr~~q~~t~~~Lg~~~sk~f~i~y~~~---~g~~~~~h~-~s~G 255 (472)
T TIGR00408 181 IENSLAIPYFVGRKPEWEKFAGAEYTWAFETIMPD-GRTLQIATSHNLGQNFAKTFEIKFETP---TGDKEYAYQ-TSYG 255 (472)
T ss_pred HHhccCCeEEEEecCchhhcCCccceEEEeEEEcC-CCEEEEeeeecccccccHhcCCEEECC---CCCEEeeEE-cccc
Confidence 98 99999999999999999999999999999996 699999999999999999999999976 456889998 7888
Q ss_pred cchhHHHHHHHhhccCCCceecCccccccC
Q psy11602 423 CATTRVICAILETHQTETGVRIPDCLRKFV 452 (1083)
Q Consensus 423 ~a~~R~i~ailEn~q~~~Gi~iP~~L~py~ 452 (1083)
+. +|+|+||||+|+++.|+++|..++|+-
T Consensus 256 i~-eRli~~lie~~~d~~gl~~P~~iaP~q 284 (472)
T TIGR00408 256 IS-TRVIGALIAIHSDEKGLVLPPRVAPIQ 284 (472)
T ss_pred HH-HHHHHHHHHHhCCCCceeeChhhCcce
Confidence 75 999999999999999999999999984
No 42
>KOG1244|consensus
Probab=99.88 E-value=2.4e-23 Score=219.18 Aligned_cols=107 Identities=24% Similarity=0.554 Sum_probs=100.1
Q ss_pred ccccCCCceeeccccCCCCCCCCc-----eeeccCCCCcccccchhhhHHHHHHhhhhcccceecccccCCCCCcccccc
Q psy11602 623 DFSKFSKILVCCVCLGERSDDVNE-----IVECDSCGVTVHEVKIQQEFLAIKFLIRYLLFWFQLEDFSKFSKILVCCVC 697 (1083)
Q Consensus 623 ~~~~~~~~~~c~~c~g~~~~~~~~-----l~~C~~Cg~~~h~~~~~~~~~~i~~~~~~~~~W~~~~d~~~~~~~~~C~VC 697 (1083)
+++-|+. ||+|||||...|+++ |++|++||+++|++|+||+.+|+..+.+| +|+||+++ .|+||
T Consensus 219 d~a~Pn~--YCDFclgdsr~nkkt~~peelvscsdcgrsghpsclqft~nm~~avk~y--rwqcieck-------~csic 287 (336)
T KOG1244|consen 219 DIAQPNP--YCDFCLGDSRENKKTGMPEELVSCSDCGRSGHPSCLQFTANMIAAVKTY--RWQCIECK-------YCSIC 287 (336)
T ss_pred ccccCCc--ccceeccccccccccCCchhhcchhhcCCCCCcchhhhhHHHHHHHHhh--eeeeeecc-------eeccc
Confidence 3556677 999999999999988 99999999999999999999999999999 99999999 99999
Q ss_pred CCCCCCCCCcEEEcccCCcccccccccccccCCCcccCCCCCCCCcccccccC
Q psy11602 698 LGERSDDVNEIVECDSCGVTVHEGCYGVQDTASISSTVSSCSTEPWFCESCRA 750 (1083)
Q Consensus 698 ~~~~~~~~n~iv~Cd~C~i~VH~~CYGv~~~~~~~~~~~~~~~~~W~Cd~C~~ 750 (1083)
. +++++++++|||.|+.+||++|..++.+++ |+|.|-|..|..
T Consensus 288 g--tsenddqllfcddcdrgyhmyclsppm~ep--------pegswsc~KOG~ 330 (336)
T KOG1244|consen 288 G--TSENDDQLLFCDDCDRGYHMYCLSPPMVEP--------PEGSWSCHLCLE 330 (336)
T ss_pred c--CcCCCceeEeecccCCceeeEecCCCcCCC--------CCCchhHHHHHH
Confidence 9 888999999999999999999999998865 899999999964
No 43
>cd00670 Gly_His_Pro_Ser_Thr_tRS_core Gly_His_Pro_Ser_Thr_tRNA synthetase class II core domain. This domain is the core catalytic domain of tRNA synthetases of the subgroup containing glycyl, histidyl, prolyl, seryl and threonyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. These enzymes belong to class II aminoacyl-tRNA synthetases (aaRS) based upon their structure and the presence of three characteristic sequence motifs in the core domain. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ and the accessory subunit of mitochondrial polymerase gamma (Pol gamma b) . Most class II tRNA synthetases are dimers, with this subgroup consisting of mostly homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA.
Probab=99.87 E-value=3.7e-22 Score=215.88 Aligned_cols=164 Identities=24% Similarity=0.338 Sum_probs=148.7
Q ss_pred CCCeeEecCChHHHHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHHHHHHH
Q psy11602 18 LDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESWKMLD 97 (1083)
Q Consensus 18 ~~~~~L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s~~~~~ 97 (1083)
++.++|+||.|.+++.++++++.++++||++++++++|||+|.+++ +|+.|+|||+|.|++.|+.++ ++.+.+.
T Consensus 60 ~~~~~LrP~~~~~i~~~~~~~~~~~~~lP~r~~~~g~~fR~E~~~~----~gl~R~reF~q~e~~~~~~~~--~~~~~~~ 133 (235)
T cd00670 60 DTDLVLRPAACEPIYQIFSGEILSYRALPLRLDQIGPCFRHEPSGR----RGLMRVREFRQVEYVVFGEPE--EAEEERR 133 (235)
T ss_pred CCeEEEecCCCHHHHHHHhccCccchhcCeeeeeecccccCCCCCC----CCChhheeeeeceEEEEcCHH--HHHHHHH
Confidence 6889999999999999999999999999999999999999999543 799999999999999999886 4888999
Q ss_pred HHHHHHHHHHHHcCCceEEEEeccCCCC--------cccceeEeEEEEecCCCceeEEEEcCCCchhhhhcccceeccCC
Q psy11602 98 EMIQNSEEFYADLGIAYRVVNIVSGALN--------HAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQSRRLLVRYGQTK 169 (1083)
Q Consensus 98 ~~~~~y~~if~~LgLpyrvv~~~sgdlg--------~~as~~~diE~~~P~~~~~~ev~s~s~cgdyqs~rl~i~y~~~~ 169 (1083)
++++.+.++|+.|||||+++..+.++++ +.+..++|+|+|+|..+++.+|++++++.++++++..+++...+
T Consensus 134 e~~~~~~~~l~~lgl~~~i~~~~~~~~~~~~~~~~~~~~~~~~d~e~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~ 213 (235)
T cd00670 134 EWLELAEEIARELGLPVRVVVADDPFFGRGGKRGLDAGRETVVEFELLLPLPGRAKETAVGSANVHLDHFGASFKIDEDG 213 (235)
T ss_pred HHHHHHHHHHHHcCCcEEEEEccChhhccCCccccccccCCceEEEEEecCCCCceeeeEEEeecchhhhhccEEEccCC
Confidence 9999999999999999999999999999 88889999999999768899999999999999999999876544
Q ss_pred Cc----cccccccchhheehee
Q psy11602 170 QK----IYATACATTRVICAIL 187 (1083)
Q Consensus 170 ~~----~n~tg~a~~Rli~All 187 (1083)
+. +...+++++|+|+|||
T Consensus 214 ~~~~~~~~~~~~~~eR~l~all 235 (235)
T cd00670 214 GGRAHTGCGGAGGEERLVLALL 235 (235)
T ss_pred CceeeEEEeCccHHHHHHHHHC
Confidence 32 3334488899999986
No 44
>cd00771 ThrRS_core Threonyl-tRNA synthetase (ThrRS) class II core catalytic domain. ThrRS is a homodimer. It is responsible for the attachment of threonine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain.
Probab=99.85 E-value=3.7e-21 Score=216.33 Aligned_cols=178 Identities=16% Similarity=0.181 Sum_probs=147.6
Q ss_pred CCCCeeEecCChHHHHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHHHHHH
Q psy11602 17 ELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESWKML 96 (1083)
Q Consensus 17 ~~~~~~L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s~~~~ 96 (1083)
.+++++|+||+|.+++.+++++++++++||+|++++++|||+|+++ +++||+|+|||+++|++.|+.++. +++.+
T Consensus 82 ~~~~l~LRP~~~~~~~~~~~~~~~s~~~LPlr~~~~g~vfR~E~~~---~~~Gl~R~reF~q~e~~i~~~~e~--~~~e~ 156 (298)
T cd00771 82 EDEEYGLKPMNCPGHCLIFKSKPRSYRDLPLRLAEFGTVHRYEQSG---ALHGLTRVRGFTQDDAHIFCTPDQ--IKEEI 156 (298)
T ss_pred CCceEEEcccCCHHHHHHHHhhccchhhCCeEEEEecCcccCCCCC---CCCCccccccEEECCEEEEeCCcc--hHHHH
Confidence 3468999999999999999999999999999999999999999852 589999999999999999988864 88899
Q ss_pred HHHHHHHHHHHHHcCCceEEEEeccCCC-------------------------------CcccceeEeEEEEecC-CCce
Q psy11602 97 DEMIQNSEEFYADLGIAYRVVNIVSGAL-------------------------------NHAAAKKLDLEAWFPG-SGAF 144 (1083)
Q Consensus 97 ~~~~~~y~~if~~LgLpyrvv~~~sgdl-------------------------------g~~as~~~diE~~~P~-~~~~ 144 (1083)
+++++.+.++|+.|||+++.+.+.+++. |.+|.+-..||+.|++ .++.
T Consensus 157 ~e~l~~~~~~l~~lgl~~~~i~l~~~~~~~~~d~e~W~~a~~~l~e~l~~~~~~~~~~~g~~afygpkid~~~~d~~gr~ 236 (298)
T cd00771 157 KGVLDLIKEVYSDFGFFDYKVELSTRPEKFIGSDEVWEKAEAALREALEEIGLPYEINEGEGAFYGPKIDFHVKDALGRE 236 (298)
T ss_pred HHHHHHHHHHHHHcCCCcEEEEEEcChhHhcCCHHHHHHHHHHHHHHHHhCCCCceECCCCcccccceEEEEEEeCCCCe
Confidence 9999999999999999999999888761 1122222445555554 4666
Q ss_pred eEEEEcCCCchhhhhcccceeccCCCc------cccc-cccchhheeheeccccCCCeeEecccccc
Q psy11602 145 RELVSCSNCLDYQSRRLLVRYGQTKQK------IYAT-ACATTRVICAILETHQTETGVRIPDCLRK 204 (1083)
Q Consensus 145 ~ev~s~s~cgdyqs~rl~i~y~~~~~~------~n~t-g~a~~Rli~Alle~~~~~~Gi~lP~~L~p 204 (1083)
.+++++. .+..+++||+|+|.+.+|. ++.+ ..+++|+|++|||+|.. .||.-|+|
T Consensus 237 ~q~~t~q-ld~~~~~~f~l~y~~~~~~~~~pv~ih~~~~Gs~eR~i~~l~e~~~g----~~P~wlaP 298 (298)
T cd00771 237 WQCSTIQ-LDFNLPERFDLTYIGEDGEKKRPVMIHRAILGSIERFIGILIEHYAG----KFPLWLAP 298 (298)
T ss_pred eecceeE-eeccChhhcCCEEEccCCCccCCEEEEeCCCCcHHHHHHHHHHhhCC----CCCCccCc
Confidence 7777877 7888899999999887664 4444 44569999999999876 78887776
No 45
>PLN02837 threonine-tRNA ligase
Probab=99.85 E-value=2.5e-21 Score=236.61 Aligned_cols=182 Identities=15% Similarity=0.174 Sum_probs=157.5
Q ss_pred CCCCCCCeeEecCChHHHHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHHH
Q psy11602 14 EKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESW 93 (1083)
Q Consensus 14 ~dr~~~~~~L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s~ 93 (1083)
.|+.++.++|+||+|..++.+|++++.||++||++++|+++|||+|+. | .++||+|+|||+|.|+|.|++++ +++
T Consensus 297 ~~~~~~~y~l~p~~~p~~~~~~~~~~~SyrdLPlr~~~~~~~~R~E~~--g-~~~GL~RvreF~~~e~h~f~~~~--q~~ 371 (614)
T PLN02837 297 MDIEDELYQLRPMNCPYHILVYKRKLHSYRDLPIRVAELGTVYRYELS--G-SLHGLFRVRGFTQDDAHIFCLED--QIK 371 (614)
T ss_pred cCCCCceEEECCCCcHHHHHHHhCccCChhHCCHhhEeecccccCCCC--C-CCcCcccccceEECeEEEEeCHH--HHH
Confidence 366677889999999999999999999999999999999999999993 2 38899999999999999999986 499
Q ss_pred HHHHHHHHHHHHHHHHcCCceEEEEeccCC-------------------------------CCcccceeEeEEEEecCC-
Q psy11602 94 KMLDEMIQNSEEFYADLGIAYRVVNIVSGA-------------------------------LNHAAAKKLDLEAWFPGS- 141 (1083)
Q Consensus 94 ~~~~~~~~~y~~if~~LgLpyrvv~~~sgd-------------------------------lg~~as~~~diE~~~P~~- 141 (1083)
+.++.++++|++||+.|||||+++.++++. .|.+|.+...||+.+++.
T Consensus 372 ~e~~~~l~~~~~~~~~lg~~~~~~~~~t~~~~~~g~~~~w~~~~~~l~~~l~~~~~~~~~~~g~~afygpkid~~~~d~~ 451 (614)
T PLN02837 372 DEIRGVLDLTEEILKQFGFSKYEINLSTRPEKSVGSDDIWEKATTALRDALDDKGWEYKVDEGGGAFYGPKIDLKIEDAL 451 (614)
T ss_pred HHHHHHHHHHHHHHHHcCCCeEEEEecCCchhccCCHHHHHHHHHHHHHHHHHcCCCceeCCCcccccCcceeeEeeccC
Confidence 999999999999999999999999998863 244677777888888875
Q ss_pred CceeEEEEcCCCchhhhhcccceeccCCCc-----c---ccccccchhheeheeccccCCCeeEecccccccc
Q psy11602 142 GAFRELVSCSNCLDYQSRRLLVRYGQTKQK-----I---YATACATTRVICAILETHQTETGVRIPDCLRKFV 206 (1083)
Q Consensus 142 ~~~~ev~s~s~cgdyqs~rl~i~y~~~~~~-----~---n~tg~a~~Rli~Alle~~~~~~Gi~lP~~L~p~~ 206 (1083)
++..+++++. .+.+++++|+++|.+.++. | +..| +++|+|++|+|+|.+. ||..|+|++
T Consensus 452 gr~~q~~tiq-ldf~~~~~f~l~y~~~d~~~~~pv~ih~~~~G-~~eRlia~Lie~~~g~----~P~~laP~q 518 (614)
T PLN02837 452 GRKWQCSTIQ-VDFNLPERFDITYVDSNSEKKRPIMIHRAILG-SLERFFGVLIEHYAGD----FPLWLAPVQ 518 (614)
T ss_pred Cceeeeccee-EeecchhhcCcEEECCCCCccCCEEEEcCCcc-CHHHHHHHHHHHcCCC----CCCCCCCcc
Confidence 7888888888 7778899999999988764 2 3334 7899999999998764 888888876
No 46
>PRK03991 threonyl-tRNA synthetase; Validated
Probab=99.78 E-value=5.4e-19 Score=214.77 Aligned_cols=230 Identities=20% Similarity=0.242 Sum_probs=179.8
Q ss_pred CeeEecccccccccccccCCCCccccccCcccchHHHHHHhhhhcccchhhhhhhhhccccccccccCceEeeeccceEE
Q psy11602 194 TGVRIPDCLRKFVPAVYLNEAGEIPFVKTAPIDEEETKKQKKQKEGMKKKLTMSLFSQVGSHGRDTRGIFRVHQFEKVEQ 273 (1083)
Q Consensus 194 ~Gi~lP~~L~p~~~~~~~~~~G~~pv~~P~~i~~d~~~~~~~k~~~~k~~~~~~~~~e~g~h~~dl~~i~Rv~qfd~~~~ 273 (1083)
.|.+|-.+|..|+.+.+. ..||.||.+|.+++ .......++.+.+++ .+|++...+ ++
T Consensus 225 ~G~~i~~~L~~~~~~~~~-~~G~~~V~tP~~~~----------------~~~~~~sgh~~~f~e---~my~v~~~~--e~ 282 (613)
T PRK03991 225 KGRLIRDLLEDYVYNLVV-ELGAMPVETPIMYD----------------LSHPAIREHADKFGE---RQYRVKSDK--KD 282 (613)
T ss_pred HHHHHHHHHHHHHHHHHH-HCCCEEEECCeecC----------------hhHHhhcccccccch---hceEecCCC--ce
Confidence 355566888999888875 78999999999999 444455667777777 688875433 22
Q ss_pred EEee---C-------CCCCcchhhhh-hhhcccc-cccccc--cCcCceeEEEeeeEEEEEEeCCCchhHHHHHHHHHHH
Q psy11602 274 FVLT---S-------PHDDESWKMLD-EMIQNSE-EFYADL--DTRGIFRVHQFEKVEQFVLTSPHDDESWKTLDEMIQN 339 (1083)
Q Consensus 274 ~~~~---~-------~~~~~s~~~~~-~~~~~~~-~~~~~~--~trGl~Rvhqf~kvE~f~~~~~~~~~s~~~~e~~~~~ 339 (1083)
+.+- - ...-.||++|| ++++.+. |||... .++||+|+|||++.|++.||.|. ++++++++++++.
T Consensus 283 l~Lrp~~c~~~~~~~~~~~~SyrdLPlr~~e~~~~~fR~E~~g~l~GL~RvReF~~~D~h~f~~~~-eqa~~e~~~~l~~ 361 (613)
T PRK03991 283 LMLRFAACFGQFLMLKDMTISYKNLPLKMYELSTYSFRLEQRGELVGLKRLRAFTMPDMHTLCKDM-EQAMEEFEKQYEM 361 (613)
T ss_pred EEEecCCCHHHHHHHhCCcCchhhCChhhheecchheeCCCCCCCcCcccccceEeeeEEEEECCH-HHHHHHHHHHHHH
Confidence 2211 1 11234999999 9999999 999844 47999999999999999999974 6899999999999
Q ss_pred HHHHHHHhCCcEEEEeccCCCc-------------------------chhhh--ceeeEEEeeCCCCcEEeeecccCccc
Q psy11602 340 SEEFYADLGIAYRVVNIVSGAL-------------------------NHAAA--KKLDLEAWFPGSGAFRELVSCSNCLA 392 (1083)
Q Consensus 340 ~e~~~~~L~lpyRvv~~~~~dl-------------------------~~~a~--~~~DiE~w~P~~~~y~Ev~S~sn~~d 392 (1083)
+.++|+.||+||+++..+++|. |.+++ -|+|+.+.+ +.|+-.++++.. .+.
T Consensus 362 ~~~i~~~lGl~~~~~~~~t~df~~~~~~~l~~~l~~~g~~~~~~~~~g~~~~yg~kie~~~~d-~~gr~~q~~T~q-ld~ 439 (613)
T PRK03991 362 ILETGEDLGRDYEVAIRFTEDFYEENKDWIVELVKREGKPVLLEILPERKHYWVLKVEFAFID-SLGRPIENPTVQ-IDV 439 (613)
T ss_pred HHHHHHHcCCCeEEEecCHHHHhhhHHHHHHHHHHHcCCCEEecccCCccccCcCcEEEEEeC-CCCCEEEEeeee-cCc
Confidence 9999999999999999887664 22333 344555544 567777877443 444
Q ss_pred ccccccceEEecccCCCCceeeEEeecccccc-hhHHHHHHHhhccCC----CceecCcccccc
Q psy11602 393 YQSRRLLVRYGQTKKMNEKIEFVHMLNATACA-TTRVICAILETHQTE----TGVRIPDCLRKF 451 (1083)
Q Consensus 393 ~qarrl~iry~~~~~~~~~~~~~htln~t~~a-~~R~i~ailEn~q~~----~Gi~iP~~L~py 451 (1083)
..+.|++|.|.+. +++..+++++..+++. ++|+|+||||+|.++ .|++||..|+|+
T Consensus 440 ~~~~~f~l~y~d~---~g~~~~Pviih~~~~GsieR~i~aliE~~~~~~~~g~gl~~P~~lAP~ 500 (613)
T PRK03991 440 ENAERFGIKYVDE---NGEEKYPIILHCSPTGSIERVIYALLEKAAKEEEEGKVPMLPTWLSPT 500 (613)
T ss_pred ccchhCCCEEECC---CCCEeeCEEEEECCEeHHHHHHHHHHHHhCCccccCceeEcCccccCc
Confidence 5589999999976 4566789999888885 999999999999998 679999999998
No 47
>cd00670 Gly_His_Pro_Ser_Thr_tRS_core Gly_His_Pro_Ser_Thr_tRNA synthetase class II core domain. This domain is the core catalytic domain of tRNA synthetases of the subgroup containing glycyl, histidyl, prolyl, seryl and threonyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. These enzymes belong to class II aminoacyl-tRNA synthetases (aaRS) based upon their structure and the presence of three characteristic sequence motifs in the core domain. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ and the accessory subunit of mitochondrial polymerase gamma (Pol gamma b) . Most class II tRNA synthetases are dimers, with this subgroup consisting of mostly homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA.
Probab=99.78 E-value=1.5e-19 Score=195.46 Aligned_cols=207 Identities=17% Similarity=0.175 Sum_probs=158.7
Q ss_pred ccccccccccccCCCCccccccCcccchHHHHHHhhhhcccchhhhhhhhhccccccccccCceEeeec------c----
Q psy11602 200 DCLRKFVPAVYLNEAGEIPFVKTAPIDEEETKKQKKQKEGMKKKLTMSLFSQVGSHGRDTRGIFRVHQF------E---- 269 (1083)
Q Consensus 200 ~~L~p~~~~~~~~~~G~~pv~~P~~i~~d~~~~~~~k~~~~k~~~~~~~~~e~g~h~~dl~~i~Rv~qf------d---- 269 (1083)
.+|..++.+.+. ..||.+|.+|.+...+.....+ +...+.+ .+|++... +
T Consensus 6 ~~l~~~~~~~~~-~~G~~ei~~P~l~~~~~~~~~~----------------~~~~~~~---~~~~~~~~~~~~~~~~~~L 65 (235)
T cd00670 6 RALERFLDDRMA-EYGYQEILFPFLAPTVLFFKGG----------------HLDGYRK---EMYTFEDKGRELRDTDLVL 65 (235)
T ss_pred HHHHHHHHHHHH-HcCCEEEECCeEcCHHHHhhcC----------------Ccccchh---hcCeeccCcccccCCeEEE
Confidence 455556555553 7899999999999965553221 1111111 22333211 0
Q ss_pred -ceEEEEeeC--CCCCcchhhhh-hhhcccccccccccC-cCceeEEEeeeEEEEEEeCCCchhHHHHHHHHHHHHHHHH
Q psy11602 270 -KVEQFVLTS--PHDDESWKMLD-EMIQNSEEFYADLDT-RGIFRVHQFEKVEQFVLTSPHDDESWKTLDEMIQNSEEFY 344 (1083)
Q Consensus 270 -~~~~~~~~~--~~~~~s~~~~~-~~~~~~~~~~~~~~t-rGl~Rvhqf~kvE~f~~~~~~~~~s~~~~e~~~~~~e~~~ 344 (1083)
+....+++. ...-.+|++|| ++++...|||+.... +|+.|+|||.++|+..++.+ +++.+.++++++.+.++|
T Consensus 66 rP~~~~~i~~~~~~~~~~~~~lP~r~~~~g~~fR~E~~~~~gl~R~reF~q~e~~~~~~~--~~~~~~~~e~~~~~~~~l 143 (235)
T cd00670 66 RPAACEPIYQIFSGEILSYRALPLRLDQIGPCFRHEPSGRRGLMRVREFRQVEYVVFGEP--EEAEEERREWLELAEEIA 143 (235)
T ss_pred ecCCCHHHHHHHhccCccchhcCeeeeeecccccCCCCCCCCChhheeeeeceEEEEcCH--HHHHHHHHHHHHHHHHHH
Confidence 000011111 11123567788 888999999996655 59999999999999999999 478999999999999999
Q ss_pred HHhCCcEEEEeccCCCcc--------hhhhceeeEEEeeCCCCcEEeeecccCcccccccccceEEecccCCCCceeeEE
Q psy11602 345 ADLGIAYRVVNIVSGALN--------HAAAKKLDLEAWFPGSGAFRELVSCSNCLAYQSRRLLVRYGQTKKMNEKIEFVH 416 (1083)
Q Consensus 345 ~~L~lpyRvv~~~~~dl~--------~~a~~~~DiE~w~P~~~~y~Ev~S~sn~~d~qarrl~iry~~~~~~~~~~~~~h 416 (1083)
+.|||||+++..+.++++ +.+..++|+|+|+|.+++|.||+++|++.|+++++..+++..+ +...++|
T Consensus 144 ~~lgl~~~i~~~~~~~~~~~~~~~~~~~~~~~~d~e~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 219 (235)
T cd00670 144 RELGLPVRVVVADDPFFGRGGKRGLDAGRETVVEFELLLPLPGRAKETAVGSANVHLDHFGASFKIDED----GGGRAHT 219 (235)
T ss_pred HHcCCcEEEEEccChhhccCCccccccccCCceEEEEEecCCCCceeeeEEEeecchhhhhccEEEccC----CCceeeE
Confidence 999999999999999999 8999999999999988999999999999999999999987642 3457999
Q ss_pred eecccccchhHHHHHHH
Q psy11602 417 MLNATACATTRVICAIL 433 (1083)
Q Consensus 417 tln~t~~a~~R~i~ail 433 (1083)
+++++ ++++|+|+|||
T Consensus 220 ~~~~~-~~~eR~l~all 235 (235)
T cd00670 220 GCGGA-GGEERLVLALL 235 (235)
T ss_pred EEeCc-cHHHHHHHHHC
Confidence 99999 89999999986
No 48
>cd00771 ThrRS_core Threonyl-tRNA synthetase (ThrRS) class II core catalytic domain. ThrRS is a homodimer. It is responsible for the attachment of threonine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain.
Probab=99.77 E-value=2.7e-20 Score=209.43 Aligned_cols=224 Identities=15% Similarity=0.167 Sum_probs=169.4
Q ss_pred CeeEecccccccccccccCCCCccccccCcccchHHHHHHhhhhcccchhhhhhhhhccccccccccCceEeeecc-ceE
Q psy11602 194 TGVRIPDCLRKFVPAVYLNEAGEIPFVKTAPIDEEETKKQKKQKEGMKKKLTMSLFSQVGSHGRDTRGIFRVHQFE-KVE 272 (1083)
Q Consensus 194 ~Gi~lP~~L~p~~~~~~~~~~G~~pv~~P~~i~~d~~~~~~~k~~~~k~~~~~~~~~e~g~h~~dl~~i~Rv~qfd-~~~ 272 (1083)
.|+.+-.+|..++.+.+. ..||.+|.+|.++..+...+ .++.+.+.+ .+|++...+ ...
T Consensus 28 ~g~~l~~~l~~~~~~~~~-~~Gy~ev~tP~l~~~~l~~~----------------sg~~~~~~~---~my~~~~~~~~l~ 87 (298)
T cd00771 28 KGAIIRNELEDFLRELQR-KRGYQEVETPIIYNKELWET----------------SGHWDHYRE---NMFPFEEEDEEYG 87 (298)
T ss_pred cHHHHHHHHHHHHHHHHH-HcCCEEEECCeecCHHHHhh----------------CCCcccccc---CceEeccCCceEE
Confidence 345556788888888774 78999999999999554422 233333344 466663322 111
Q ss_pred EEEee-----CC--CCCcchhhhh-hhhcccccccccc--cCcCceeEEEeeeEEEEEEeCCCchhHHHHHHHHHHHHHH
Q psy11602 273 QFVLT-----SP--HDDESWKMLD-EMIQNSEEFYADL--DTRGIFRVHQFEKVEQFVLTSPHDDESWKTLDEMIQNSEE 342 (1083)
Q Consensus 273 ~~~~~-----~~--~~~~s~~~~~-~~~~~~~~~~~~~--~trGl~Rvhqf~kvE~f~~~~~~~~~s~~~~e~~~~~~e~ 342 (1083)
.-+-+ .. +...||++|| ++++...|||+.. +++||+|+|||+++|+..++.+ +++.+.+++|+.++++
T Consensus 88 LRP~~~~~~~~~~~~~~~s~~~LPlr~~~~g~vfR~E~~~~~~Gl~R~reF~q~e~~i~~~~--e~~~~e~~e~l~~~~~ 165 (298)
T cd00771 88 LKPMNCPGHCLIFKSKPRSYRDLPLRLAEFGTVHRYEQSGALHGLTRVRGFTQDDAHIFCTP--DQIKEEIKGVLDLIKE 165 (298)
T ss_pred EcccCCHHHHHHHHhhccchhhCCeEEEEecCcccCCCCCCCCCccccccEEECCEEEEeCC--cchHHHHHHHHHHHHH
Confidence 11111 11 1134788999 9999999999854 4899999999999999999998 5788999999999999
Q ss_pred HHHHhCCcEEEEeccCCCcchhhhceeeEEEeeCCCCcEEeeecccCc--------------------------------
Q psy11602 343 FYADLGIAYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNC-------------------------------- 390 (1083)
Q Consensus 343 ~~~~L~lpyRvv~~~~~dl~~~a~~~~DiE~w~P~~~~y~Ev~S~sn~-------------------------------- 390 (1083)
+|+.|||++++|.+++.+ +...+|+|+|+|+++.|+|+.|+||.
T Consensus 166 ~l~~lgl~~~~i~l~~~~----~~~~~d~e~W~~a~~~l~e~l~~~~~~~~~~~g~~afygpkid~~~~d~~gr~~q~~t 241 (298)
T cd00771 166 VYSDFGFFDYKVELSTRP----EKFIGSDEVWEKAEAALREALEEIGLPYEINEGEGAFYGPKIDFHVKDALGREWQCST 241 (298)
T ss_pred HHHHcCCCcEEEEEEcCh----hHhcCCHHHHHHHHHHHHHHHHhCCCCceECCCCcccccceEEEEEEeCCCCeeecce
Confidence 999999999999999998 56689999999999988888777665
Q ss_pred ---ccccccccceEEecccCCCCceeeEEeeccccc-chhHHHHHHHhhccCCCceecCccccc
Q psy11602 391 ---LAYQSRRLLVRYGQTKKMNEKIEFVHMLNATAC-ATTRVICAILETHQTETGVRIPDCLRK 450 (1083)
Q Consensus 391 ---~d~qarrl~iry~~~~~~~~~~~~~htln~t~~-a~~R~i~ailEn~q~~~Gi~iP~~L~p 450 (1083)
+...++|.+|+|.++ +++.+++.++.-+.+ +++|+|++|||.|+. ++|--|+|
T Consensus 242 ~qld~~~~~~f~l~y~~~---~~~~~~pv~ih~~~~Gs~eR~i~~l~e~~~g----~~P~wlaP 298 (298)
T cd00771 242 IQLDFNLPERFDLTYIGE---DGEKKRPVMIHRAILGSIERFIGILIEHYAG----KFPLWLAP 298 (298)
T ss_pred eEeeccChhhcCCEEEcc---CCCccCCEEEEeCCCCcHHHHHHHHHHhhCC----CCCCccCc
Confidence 224578999999876 445667555544433 579999999999985 78888776
No 49
>PRK12444 threonyl-tRNA synthetase; Reviewed
Probab=99.75 E-value=1.8e-18 Score=213.34 Aligned_cols=185 Identities=14% Similarity=0.168 Sum_probs=143.3
Q ss_pred CCCCCCCCCeeEecCChHHHHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchH
Q psy11602 12 APEKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDE 91 (1083)
Q Consensus 12 ~~~dr~~~~~~L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~ 91 (1083)
+..|+.+++++|+||+|.+++.+|++++.||++||+|+|++++|||+|..+ .++||+|+|||+|.|++.|+.++ +
T Consensus 321 y~~d~~~~~~~LrP~~~~~~~~~~~~~~~sy~~LP~r~~~~g~~fR~E~~~---~~~Gl~R~reF~q~d~~~f~~~~--~ 395 (639)
T PRK12444 321 YFSEVDNKSFALKPMNCPGHMLMFKNKLHSYRELPIRMCEFGQVHRHEFSG---ALNGLLRVRTFCQDDAHLFVTPD--Q 395 (639)
T ss_pred CeecCCCcEEEEccCCCHHHHHHHhCcccChhhCCceeEEeccccCCCCCc---CCcCcceeeeeEEccEEEECCHH--H
Confidence 455778889999999999999999999999999999999999999999942 28899999999999999998775 4
Q ss_pred HHHHHHHHHHHHHHHHHHcCCceEEEE--eccCCCCc----------------------------ccceeEeEEEEecCC
Q psy11602 92 SWKMLDEMIQNSEEFYADLGIAYRVVN--IVSGALNH----------------------------AAAKKLDLEAWFPGS 141 (1083)
Q Consensus 92 s~~~~~~~~~~y~~if~~LgLpyrvv~--~~sgdlg~----------------------------~as~~~diE~~~P~~ 141 (1083)
+++.++++++.+.+||+.|||||++.- .|..-+|. ++++...+|+.+.+.
T Consensus 396 ~~~e~~~~~~~~~~i~~~lgl~~~~~~~~r~~~~~G~~e~~~~~~~~l~~~l~~~~~~y~~~~~~ga~Y~~~~e~~~~~~ 475 (639)
T PRK12444 396 IEDEIKSVMAQIDYVYKTFGFEYEVELSTRPEDSMGDDELWEQAEASLENVLQSLNYKYRLNEGDGAFYGPKIDFHIKDA 475 (639)
T ss_pred HHHHHHHHHHHHHHHHHHcCCcEEEEEECCccccCCCHHHHHHHHHHHHHHHHHcCCCceeccCCcccccceEEEEeecC
Confidence 999999999999999999999998622 22223444 455666778777753
Q ss_pred Cc-eeEEEEcCCCchhhhhcccceeccCCCc------cc-cccccchhheeheeccccCCCeeEecccccccc
Q psy11602 142 GA-FRELVSCSNCLDYQSRRLLVRYGQTKQK------IY-ATACATTRVICAILETHQTETGVRIPDCLRKFV 206 (1083)
Q Consensus 142 ~~-~~ev~s~s~cgdyqs~rl~i~y~~~~~~------~n-~tg~a~~Rli~Alle~~~~~~Gi~lP~~L~p~~ 206 (1083)
.+ -.++++. .++-+.+.+|+++|.+.+|. ++ +.+.+++|+|++|++++ |..+|..++|..
T Consensus 476 ~~~~~~~~t~-~~d~~~~~~f~l~~~~~~g~~~~P~i~~~~~~g~ieRli~~L~e~~----~~~~p~~~ap~q 543 (639)
T PRK12444 476 LNRSHQCGTI-QLDFQMPEKFDLNYIDEKNEKRRPVVIHRAVLGSLDRFLAILIEHF----GGAFPAWLAPVQ 543 (639)
T ss_pred CCChhcccce-eeecccccccceEEECCCCCccccEEEEECCCCCHHHHHHHHHHhc----CCCCCCccCCce
Confidence 22 1233332 34556799999999876543 22 22448899999999975 346776666665
No 50
>PRK04173 glycyl-tRNA synthetase; Provisional
Probab=99.75 E-value=2.2e-18 Score=203.83 Aligned_cols=184 Identities=24% Similarity=0.324 Sum_probs=154.8
Q ss_pred CCCCeeEecCChHHHHHHHhcccCCCC-CCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHHHHH
Q psy11602 17 ELDDKYLIATSEQPICAVHRDSWLPEA-SLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESWKM 95 (1083)
Q Consensus 17 ~~~~~~L~pTsE~~i~~l~~~~i~s~~-~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s~~~ 95 (1083)
.+..+||+|+..+.|...|.+++.||+ +||++++|++++||+|+.+ ..||+|+|||++.|+..|+.|++ +.+.
T Consensus 156 ~~~~~~lRpetaqg~~~~f~~~~~syr~dLPlr~aq~g~~~RnE~s~----~~gL~RvReF~q~e~hiF~~peq--~~~e 229 (456)
T PRK04173 156 SKSLGYLRPETAQGIFVNFKNVLRTARKKLPFGIAQIGKSFRNEITP----RNFIFRTREFEQMELEFFVKPGT--DNEW 229 (456)
T ss_pred CCcceeeccccchhHHHHHHHHHHhccccCCeeeeEEchhHhCccCC----CCCceeeceeeeeEEEEEECcCh--HHHH
Confidence 356889999888888888999999999 9999999999999999943 46999999999999999999975 8999
Q ss_pred HHHHHHHHHHHHHHcCCc---eEEEEeccCCCCcccceeEeEEEEecCCCceeEEEEcCCCchhhhh------cccceec
Q psy11602 96 LDEMIQNSEEFYADLGIA---YRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQSR------RLLVRYG 166 (1083)
Q Consensus 96 ~~~~~~~y~~if~~LgLp---yrvv~~~sgdlg~~as~~~diE~~~P~~~~~~ev~s~s~cgdyqs~------rl~i~y~ 166 (1083)
+..+++.+..+|+.||++ +++...+..++...+...+|+|+++|....|.+++++..-+||.-. +++++|.
T Consensus 230 ~~~~l~~~~~~l~~lG~~~~~~~~s~~~~~e~~~ys~~~wd~e~~~~~g~~~~e~~g~~~~~dydL~~~~~~s~~dl~y~ 309 (456)
T PRK04173 230 FAYWIELRKNWLLDLGIDPENLRFREHLPEELAHYSKATWDIEYKFPFGRFWGELEGIANRTDYDLSRHSKHSGEDLSYF 309 (456)
T ss_pred HHHHHHHHHHHHHHcCCCccceEEEecCcchhhccHHHHHhHHHhCCCCCcEEEEeeeeccchhhcccchhhcCCCeEEE
Confidence 999999999999999998 7777777778888888899999999977779998888888888755 5788887
Q ss_pred --cCCCc-----cccccccchhheeheeccccCC---------CeeEecccccccc
Q psy11602 167 --QTKQK-----IYATACATTRVICAILETHQTE---------TGVRIPDCLRKFV 206 (1083)
Q Consensus 167 --~~~~~-----~n~tg~a~~Rli~Alle~~~~~---------~Gi~lP~~L~p~~ 206 (1083)
..++. |-..+++++|++.|||+.+.++ .|++||..|+|+.
T Consensus 310 ~~~~~~~~~~P~vi~~siGieRl~~ail~~~~~~~~~~~~~~r~~l~~P~~lAP~q 365 (456)
T PRK04173 310 DDETTGEKYIPYVIEPSAGLDRLLLAFLEDAYTEEELGGGDKRTVLRLPPALAPVK 365 (456)
T ss_pred ecCCCCceeeeEEEEecccHHHHHHHHHHHHcccccccCCcceeEEECCCcCCCCE
Confidence 22222 4455578999888887765444 2479999999998
No 51
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=99.69 E-value=1.1e-17 Score=161.27 Aligned_cols=81 Identities=28% Similarity=0.604 Sum_probs=74.4
Q ss_pred CCCcceeccCCceeecccccccCCcEEecccccCceeeecCccCCcCCCccccCCCCCCCCceeEEeCCCCCCccceece
Q psy11602 803 RGGIFKETDVGKWVHLVCALYIPGVAFGEVDRLSNVTLFEMPYSRWGAKSCALCPDESYARTELALQSPPVNCVPTLLVY 882 (1083)
Q Consensus 803 ~~galK~t~~~~WvHv~CAlw~pev~f~~~~~~~pv~~~~ip~~r~~~~~C~iC~~~~~~~~GaciqC~~~~C~~~fH~~ 882 (1083)
.+||||+|.+++|||++||+|+|++.|.+...|+||++..|+.+|+. ..|.||+++ .|+||+|...+|.++||+.
T Consensus 9 ~~Galk~t~~~~WvHv~Cal~~~~~~~~~~~~~~~v~~~~i~~~~~~-~~C~iC~~~----~G~~i~C~~~~C~~~fH~~ 83 (110)
T PF13832_consen 9 RGGALKRTSDGQWVHVLCALWIPEVIFNNGESMEPVDISNIPPSRFK-LKCSICGKS----GGACIKCSHPGCSTAFHPT 83 (110)
T ss_pred CCCcccCccCCcEEEeEccceeCccEEeechhcCcccceeecchhcC-CcCcCCCCC----CceeEEcCCCCCCcCCCHH
Confidence 78999999999999999999999999999999999997789999987 489999985 9999999999999999997
Q ss_pred eeccCC
Q psy11602 883 MEVVFP 888 (1083)
Q Consensus 883 ~~~~~~ 888 (1083)
++...+
T Consensus 84 CA~~~g 89 (110)
T PF13832_consen 84 CARKAG 89 (110)
T ss_pred HHHHCC
Confidence 664443
No 52
>TIGR00418 thrS threonyl-tRNA synthetase. This model represents the threonyl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. Note that B. subtilis has closely related isozymes thrS and thrZ. The N-terminal regions are quite dissimilar between archaeal and eubacterial forms, while some eukaryotic forms are missing sequence there altogether..
Probab=99.68 E-value=1e-16 Score=195.22 Aligned_cols=183 Identities=15% Similarity=0.184 Sum_probs=141.9
Q ss_pred CCCCCCCCeeEecCChHHHHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHH
Q psy11602 13 PEKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDES 92 (1083)
Q Consensus 13 ~~dr~~~~~~L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s 92 (1083)
.+|+.++.++|+||+|.+++.++.++++++++||+|+|+++++||+|.++ .++||+|+|||+++|++.|+.+ +++
T Consensus 249 ~~d~~~~~~~LrP~~~~~i~~~~~~~~~s~~~lP~rl~~~g~~fR~E~~g---~~~Gl~R~reF~q~~~~~~~~~--~~~ 323 (563)
T TIGR00418 249 FTELDNREFMLKPMNCPGHFLIFKSSLRSYRDLPLRIAELGYSHRYEQSG---ELHGLMRVRGFTQDDAHIFCTE--DQI 323 (563)
T ss_pred eccCCCceEEEecCCCHHHHHHHhCcCCChHHCCceeeEeccccCCCCCc---CCcCcccccceEEeeeEEEcCH--HHH
Confidence 46888899999999999999999999999999999999999999999742 4899999999999999999984 679
Q ss_pred HHHHHHHHHHHHHHHHHcCCceEEEEeccCCCC--------------------------------cccce--eEeEEEEe
Q psy11602 93 WKMLDEMIQNSEEFYADLGIAYRVVNIVSGALN--------------------------------HAAAK--KLDLEAWF 138 (1083)
Q Consensus 93 ~~~~~~~~~~y~~if~~LgLpyrvv~~~sgdlg--------------------------------~~as~--~~diE~~~ 138 (1083)
++.|.+++..+.++|+.|||+++.+.+.+++.- .++.+ ++|+|+ .
T Consensus 324 ~~e~~~~i~~~~~~~~~lgl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~g~~y~~~~~f~~-~ 402 (563)
T TIGR00418 324 KEEFKNQFRLIQKVYSDFGFSFDKYELSTRDPEDFIGEDELWEKAEAALEEALKELGVPYEIDPGRGAFYGPKIDFAF-K 402 (563)
T ss_pred HHHHHHHHHHHHHHHHHcCCCeEEEEEeCCChhhhcCCHHHHHHHHHHHHHHHHhCCCceEEcCCCcceecceEEEEe-e
Confidence 999999999999999999999998988877431 01111 245552 2
Q ss_pred cCCCceeEEEEcCCCchhhhhcccceeccCCCc-----c--ccccccchhheeheeccccCCCeeEecccccccc
Q psy11602 139 PGSGAFRELVSCSNCLDYQSRRLLVRYGQTKQK-----I--YATACATTRVICAILETHQTETGVRIPDCLRKFV 206 (1083)
Q Consensus 139 P~~~~~~ev~s~s~cgdyqs~rl~i~y~~~~~~-----~--n~tg~a~~Rli~Alle~~~~~~Gi~lP~~L~p~~ 206 (1083)
...++..|++++. .+-..+.|+++.|.+..|. | -|.+++++|+|++|++.+. ..+|..++|..
T Consensus 403 ~~lg~~~~~~t~q-~~~~~g~ryd~~~~~~~g~~~~p~ii~~Gfa~gieRli~~l~e~~~----~~~p~~~~p~~ 472 (563)
T TIGR00418 403 DALGREWQCATVQ-LDFELPERFDLTYVDEDNEEKRPVMIHRAILGSIERFIAILLEKYA----GNFPLWLAPVQ 472 (563)
T ss_pred cCCCCceeeceee-eccCCHhhcCCEEECCCCCEEeeEEEEeeccCcHHHHHHHHHHhcc----CCCCCcCCCce
Confidence 2235666776654 3335588999998766443 3 2445578999999988643 33564455543
No 53
>PF00587 tRNA-synt_2b: tRNA synthetase class II core domain (G, H, P, S and T) This Prosite entry contains all class II enzymes. seryl tRNA synthetase structure; InterPro: IPR002314 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain includes the glycine, histidine, proline, threonine and serine tRNA synthetases.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 3UH0_A 3UGT_C 3UGQ_A 1B76_B 1GGM_B 1ATI_A 1ADY_C 1ADJ_C 2I4O_A 2I4M_B ....
Probab=99.68 E-value=6.6e-17 Score=167.75 Aligned_cols=155 Identities=26% Similarity=0.454 Sum_probs=120.2
Q ss_pred cccccccccccC-CCCccccccCcccchHHHHHHhhhhcccchhhhhhhhhccccccccccCceEeeeccceEEEEeeCC
Q psy11602 201 CLRKFVPAVYLN-EAGEIPFVKTAPIDEEETKKQKKQKEGMKKKLTMSLFSQVGSHGRDTRGIFRVHQFEKVEQFVLTSP 279 (1083)
Q Consensus 201 ~L~p~~~~~~~~-~~G~~pv~~P~~i~~d~~~~~~~k~~~~k~~~~~~~~~e~g~h~~dl~~i~Rv~qfd~~~~~~~~~~ 279 (1083)
+|..++...+ . ..||.+|..|+++..+...+ .++.+.+.+ .+|++..-++ +++.+..-
T Consensus 4 ~l~~~~~~~~-~~~~G~~ev~~P~l~~~~~~~~----------------sg~~~~~~~---~~~~~~~~~~-~~~~L~pt 62 (173)
T PF00587_consen 4 ALERFIREEF-VLKFGFQEVDTPILIPSEVWEK----------------SGHWDNFSD---EMFKVKDRGD-EEYCLRPT 62 (173)
T ss_dssp HHHHHHHHHH-HHHTTEEEEB--SEEEHHHHHH----------------HSHHHHHGG---GSEEEEETTT-EEEEE-SS
T ss_pred HHHHHHHHHh-HHhcCCEEEECCeEEehHHhhh----------------ccccccccC---Ceeeeeeccc-ccEEeccc
Confidence 4555555544 3 68999999999999555543 344444444 4677655333 33333221
Q ss_pred C----------CCcc-hhhhh-hhhccccccccc-ccCcCceeEEEeeeEEEEEEeCCCchhHHHHHHHHHHHHHHHHHH
Q psy11602 280 H----------DDES-WKMLD-EMIQNSEEFYAD-LDTRGIFRVHQFEKVEQFVLTSPHDDESWKTLDEMIQNSEEFYAD 346 (1083)
Q Consensus 280 ~----------~~~s-~~~~~-~~~~~~~~~~~~-~~trGl~Rvhqf~kvE~f~~~~~~~~~s~~~~e~~~~~~e~~~~~ 346 (1083)
. .-.+ +++|| ++++.+.|||.. +.++||+|+|||+++|++.++.| +++.+.++++++.+.+||+.
T Consensus 63 ~~~~~~~~~~~~~~~~~~~LP~~~~~~g~~fR~E~~~~~gl~R~reF~~~e~~~f~~~--~~~~~~~~~~~~~~~~i~~~ 140 (173)
T PF00587_consen 63 SEPGIYSLFKNEIRSSYRDLPLKLYQIGTCFRNEARPTRGLFRLREFTMDEMHIFCTP--EQSEEEFEELLELYKEILEK 140 (173)
T ss_dssp SHHHHHHHHHHHEEBHGGGSSEEEEEEEEEEBSSSSSBSTTTS-SEEEEEEEEEEESS--HHHHHHHHHHHHHHHHHHHH
T ss_pred cccceeeeecceeeeccccCCeEEeecccccccccccccccceeeEeeeeceEEEeCC--cccHHHHHHHHHHHHHHHHH
Confidence 0 1124 78899 889999999998 99999999999999999999999 79999999999999999999
Q ss_pred hCC-cEEEEeccCCCcchhhhceeeEEEeeCCC
Q psy11602 347 LGI-AYRVVNIVSGALNHAAAKKLDLEAWFPGS 378 (1083)
Q Consensus 347 L~l-pyRvv~~~~~dl~~~a~~~~DiE~w~P~~ 378 (1083)
||| |||++..+++||+..+.+++|+|+|+|+|
T Consensus 141 lgl~~~~~~~~~~~~~~~~~~~~~d~e~~~~~~ 173 (173)
T PF00587_consen 141 LGLEPYRIVLSSSGELGAYAKYEFDIEAWFPAQ 173 (173)
T ss_dssp TTSGCEEEEEEETCTSCTTSSEEEEEEEEETCC
T ss_pred cCCceEEEEEcCCCccCCCHHHcccHHHhCcCC
Confidence 999 99999999999999999999999999986
No 54
>PLN02837 threonine-tRNA ligase
Probab=99.68 E-value=1e-16 Score=196.31 Aligned_cols=226 Identities=12% Similarity=0.144 Sum_probs=172.7
Q ss_pred CeeEecccccccccccccCCCCccccccCcccchHHHHHHhhhhcccchhhhhhhhhccccccccccCceEeeecc----
Q psy11602 194 TGVRIPDCLRKFVPAVYLNEAGEIPFVKTAPIDEEETKKQKKQKEGMKKKLTMSLFSQVGSHGRDTRGIFRVHQFE---- 269 (1083)
Q Consensus 194 ~Gi~lP~~L~p~~~~~~~~~~G~~pv~~P~~i~~d~~~~~~~k~~~~k~~~~~~~~~e~g~h~~dl~~i~Rv~qfd---- 269 (1083)
.|++|..+|..|+.+.+. ..||.+|.+|.+++ .++....++.+.+++ +||++..-+
T Consensus 245 ~G~~l~~~L~~~~~~~~~-~~G~~~v~tP~l~~----------------~~l~~~sGh~~~~~~---~mf~~~~~~~~~y 304 (614)
T PLN02837 245 KGAIVRHIIEDSWKKMHF-EHGYDLLYTPHVAK----------------ADLWKTSGHLDFYKE---NMYDQMDIEDELY 304 (614)
T ss_pred hHHHHHHHHHHHHHHHHH-HCCCEEEECCccCC----------------HHHHhhcCCcccchh---hcccccCCCCceE
Confidence 345556889999987774 68999999999999 444555567777777 577764321
Q ss_pred --ceEEEEe-e--CCCCCcchhhhh-hhhccccccccccc--CcCceeEEEeeeEEEEEEeCCCchhHHHHHHHHHHHHH
Q psy11602 270 --KVEQFVL-T--SPHDDESWKMLD-EMIQNSEEFYADLD--TRGIFRVHQFEKVEQFVLTSPHDDESWKTLDEMIQNSE 341 (1083)
Q Consensus 270 --~~~~~~~-~--~~~~~~s~~~~~-~~~~~~~~~~~~~~--trGl~Rvhqf~kvE~f~~~~~~~~~s~~~~e~~~~~~e 341 (1083)
+....++ + ..+.-.||++|| ++++.+.|||..+. ++||+|||||+++|++.+|+| +++.+++++|++.++
T Consensus 305 ~l~p~~~p~~~~~~~~~~~SyrdLPlr~~~~~~~~R~E~~g~~~GL~RvreF~~~e~h~f~~~--~q~~~e~~~~l~~~~ 382 (614)
T PLN02837 305 QLRPMNCPYHILVYKRKLHSYRDLPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHIFCLE--DQIKDEIRGVLDLTE 382 (614)
T ss_pred EECCCCcHHHHHHHhCccCChhHCCHhhEeecccccCCCCCCCcCcccccceEECeEEEEeCH--HHHHHHHHHHHHHHH
Confidence 1111111 1 111235899999 99999999999663 899999999999999999999 689999999999999
Q ss_pred HHHHHhCCcEEEEeccCCC-------------------------------cchhhhceeeEEEeeCCC-CcEEeeecccC
Q psy11602 342 EFYADLGIAYRVVNIVSGA-------------------------------LNHAAAKKLDLEAWFPGS-GAFRELVSCSN 389 (1083)
Q Consensus 342 ~~~~~L~lpyRvv~~~~~d-------------------------------l~~~a~~~~DiE~w~P~~-~~y~Ev~S~sn 389 (1083)
++|+.|||||+++.++++. .|.+|....+||+-++.. |+-.+++++.
T Consensus 383 ~~~~~lg~~~~~~~~~t~~~~~~g~~~~w~~~~~~l~~~l~~~~~~~~~~~g~~afygpkid~~~~d~~gr~~q~~tiq- 461 (614)
T PLN02837 383 EILKQFGFSKYEINLSTRPEKSVGSDDIWEKATTALRDALDDKGWEYKVDEGGGAFYGPKIDLKIEDALGRKWQCSTIQ- 461 (614)
T ss_pred HHHHHcCCCeEEEEecCCchhccCCHHHHHHHHHHHHHHHHHcCCCceeCCCcccccCcceeeEeeccCCceeeeccee-
Confidence 9999999999999999862 234777888888888874 8888888887
Q ss_pred cccccccccceEEecccCCCCcee---eEEeecccccchhHHHHHHHhhccCCCceecCcccccc
Q psy11602 390 CLAYQSRRLLVRYGQTKKMNEKIE---FVHMLNATACATTRVICAILETHQTETGVRIPDCLRKF 451 (1083)
Q Consensus 390 ~~d~qarrl~iry~~~~~~~~~~~---~~htln~t~~a~~R~i~ailEn~q~~~Gi~iP~~L~py 451 (1083)
.+-..+.|+++.|.+.. ++.. .+|.- ..| .+.|+|++|+|+|... +|..|.|+
T Consensus 462 ldf~~~~~f~l~y~~~d---~~~~~pv~ih~~-~~G-~~eRlia~Lie~~~g~----~P~~laP~ 517 (614)
T PLN02837 462 VDFNLPERFDITYVDSN---SEKKRPIMIHRA-ILG-SLERFFGVLIEHYAGD----FPLWLAPV 517 (614)
T ss_pred EeecchhhcCcEEECCC---CCccCCEEEEcC-Ccc-CHHHHHHHHHHHcCCC----CCCCCCCc
Confidence 44456899999998763 3344 44532 333 6899999999998754 78777765
No 55
>PRK12325 prolyl-tRNA synthetase; Provisional
Probab=99.63 E-value=7.9e-16 Score=181.86 Aligned_cols=230 Identities=14% Similarity=0.200 Sum_probs=174.7
Q ss_pred eeEecccccccccccccCCCCccccccCcccchHHHHHHhhhhcccchhhhhhhhhccccccccccCceEeeeccceEEE
Q psy11602 195 GVRIPDCLRKFVPAVYLNEAGEIPFVKTAPIDEEETKKQKKQKEGMKKKLTMSLFSQVGSHGRDTRGIFRVHQFEKVEQF 274 (1083)
Q Consensus 195 Gi~lP~~L~p~~~~~~~~~~G~~pv~~P~~i~~d~~~~~~~k~~~~k~~~~~~~~~e~g~h~~dl~~i~Rv~qfd~~~~~ 274 (1083)
|.++-.+|..++...+. ..||.+|..|.+...+.. ...++...+++ .+|++..-+. +++
T Consensus 46 g~~i~~~i~~~i~~~~~-~~G~~ev~~P~l~~~~l~----------------~~sg~~~~~~~---emf~~~d~~~-~~~ 104 (439)
T PRK12325 46 GLKVLKKIENIVREEQN-RAGAIEILMPTIQPADLW----------------RESGRYDAYGK---EMLRIKDRHD-REM 104 (439)
T ss_pred HHHHHHHHHHHHHHHHH-HcCCEEEECCccccHHHH----------------hhcCCccccch---hheEEecCCC-CEE
Confidence 34444677778777774 789999999999995444 22234444555 5777654222 123
Q ss_pred EeeCC-----------CCCcchhhhh-hhhccccccccc-ccCcCceeEEEeeeEEEEEEeCCCchhHHHHHHHHHHHHH
Q psy11602 275 VLTSP-----------HDDESWKMLD-EMIQNSEEFYAD-LDTRGIFRVHQFEKVEQFVLTSPHDDESWKTLDEMIQNSE 341 (1083)
Q Consensus 275 ~~~~~-----------~~~~s~~~~~-~~~~~~~~~~~~-~~trGl~Rvhqf~kvE~f~~~~~~~~~s~~~~e~~~~~~e 341 (1083)
.+. | ..-.||++|| ++++...+||+. +...||+|+|||.+-+...++.+. +++.+.+++|++.+.
T Consensus 105 ~L~-Pt~e~~~~~~~~~~~~syrdLPlrl~q~~~~fR~E~~~~~GL~R~reF~~~D~h~f~~~~-~~a~~~~~~~~~~~~ 182 (439)
T PRK12325 105 LYG-PTNEEMITDIFRSYVKSYKDLPLNLYHIQWKFRDEIRPRFGVMRGREFLMKDAYSFDLDE-EGARHSYNRMFVAYL 182 (439)
T ss_pred EEc-CCCcHHHHHHHHHHhhhchhhchHheEecCEecCCCCCCCCccccceEeEeccEEEeCCH-HHHHHHHHHHHHHHH
Confidence 322 2 1234799999 999999999997 666799999999999999998765 789999999999999
Q ss_pred HHHHHhCCcEEEEeccCCCcchhhhcee---------------------------------------------eEEEeeC
Q psy11602 342 EFYADLGIAYRVVNIVSGALNHAAAKKL---------------------------------------------DLEAWFP 376 (1083)
Q Consensus 342 ~~~~~L~lpyRvv~~~~~dl~~~a~~~~---------------------------------------------DiE~w~P 376 (1083)
++|+.|||||+.|.+.++.+|-..+..| ..+.-+|
T Consensus 183 ~i~~~lgl~~~~v~~~~~~~gg~~s~ef~~~~~~Ge~~~~~c~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 262 (439)
T PRK12325 183 RTFARLGLKAIPMRADTGPIGGDLSHEFIILAETGESTVFYDKDFLDLLVPGEDIDFDVADLQPIVDEWTSLYAATEEMH 262 (439)
T ss_pred HHHHHcCCceEEEEEccCCCCCCcceeeEeecCCCCceEEEcCCchhhccCCCcccCCHHHHHHHHhhhcccccchhhhh
Confidence 9999999999999998887664332221 1111223
Q ss_pred CCC-------------cEEeeecccCcccccccccceEEecccCCCCceeeEEeecccccchhHHHHHHHhhccCCCcee
Q psy11602 377 GSG-------------AFRELVSCSNCLAYQSRRLLVRYGQTKKMNEKIEFVHMLNATACATTRVICAILETHQTETGVR 443 (1083)
Q Consensus 377 ~~~-------------~y~Ev~S~sn~~d~qarrl~iry~~~~~~~~~~~~~htln~t~~a~~R~i~ailEn~q~~~Gi~ 443 (1083)
+.+ +-.||+.+.++++..|++++++|.+. +++...+|+ ++.|+.++|+|++|+|+|.++.|++
T Consensus 263 ~~~~~~~~~~~~~~~~~~ievg~~~~lg~~ys~~f~~~y~d~---~g~~~~i~~-~~~GiGieRli~~l~e~~~d~~g~~ 338 (439)
T PRK12325 263 DEAAFAAVPEERRLSARGIEVGHIFYFGTKYSEPMNAKVQGP---DGKEVPVHM-GSYGIGVSRLVAAIIEASHDDKGII 338 (439)
T ss_pred ccCCCCcCCCcceeecceEEEEeeecCcccccHhcCCEEECC---CCCEEeEEE-eeeECCHHHHHHHHHHHhCccCCCc
Confidence 222 23489999999999999999999976 456778886 5999999999999999999999999
Q ss_pred cCcccccc
Q psy11602 444 IPDCLRKF 451 (1083)
Q Consensus 444 iP~~L~py 451 (1083)
+|..++|+
T Consensus 339 ~P~~iaP~ 346 (439)
T PRK12325 339 WPESVAPF 346 (439)
T ss_pred CCCCcCCe
Confidence 99999998
No 56
>PRK14799 thrS threonyl-tRNA synthetase; Provisional
Probab=99.62 E-value=5.9e-16 Score=185.97 Aligned_cols=180 Identities=17% Similarity=0.243 Sum_probs=134.1
Q ss_pred CCCCCCeeEecCChHHHHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHHHH
Q psy11602 15 KDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESWK 94 (1083)
Q Consensus 15 dr~~~~~~L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s~~ 94 (1083)
|..+++++|+||+|.+++.+|+++..||++||+|+|++++|||+|.. ..++||+|+|||++.|+..|+.++. +.+
T Consensus 218 ~~~~e~~~LrPm~cp~~~~~~~~~~~SyrdLPlR~~e~g~vfR~E~s---g~l~GL~RvReF~Q~DaHif~~~~q--~~~ 292 (545)
T PRK14799 218 NMEGDEYGVKPMNCPAHILIYKSKPRTYRDLPIRFSEFGHVYRWEKK---GELYGLLRVRGFVQDDGHIFLREDQ--LRE 292 (545)
T ss_pred eccCceEEeccCCCHHHHHHHhccccChhhCCHhhEEecceecCCCC---CCccccccceeEEEcccEEEeCHHH--HHH
Confidence 45578999999999999999999999999999999999999999995 2678999999999999999988753 555
Q ss_pred HHHHHHHHHHHHHHHcCCc---eEEEEe--cc--------CCC----------------------CcccceeEeEEEEec
Q psy11602 95 MLDEMIQNSEEFYADLGIA---YRVVNI--VS--------GAL----------------------NHAAAKKLDLEAWFP 139 (1083)
Q Consensus 95 ~~~~~~~~y~~if~~LgLp---yrvv~~--~s--------gdl----------------------g~~as~~~diE~~~P 139 (1083)
...++++...++|+.||++ |++... |. |+. |+-...++|+++ .+
T Consensus 293 E~~~~l~~i~~vy~~fG~~~~~~~i~ls~Rpe~~~G~~~~wdka~~~l~~~L~~~gl~~~~~~g~gafygpkiD~~v-~d 371 (545)
T PRK14799 293 EIKMLISKTVEVWHKFGFKDDDIKPYLSTRPDESIGSDELWEKATNALISALQESGLKFGIKEKEGAFYGPKIDFEI-RD 371 (545)
T ss_pred HHHHHHHHHHHHHHHhCCCcccEEEEEEcChhhhcCCHHHHHHHHHHHHHHHHHcCCCeEEecceeccccCccceEe-hh
Confidence 5555556556666666653 333221 10 111 111113677777 77
Q ss_pred CCCceeEEEEcCCCchhh-hhcccceeccCCCc------cc-cccccchhheeheeccccCCCeeEecccccccc
Q psy11602 140 GSGAFRELVSCSNCLDYQ-SRRLLVRYGQTKQK------IY-ATACATTRVICAILETHQTETGVRIPDCLRKFV 206 (1083)
Q Consensus 140 ~~~~~~ev~s~s~cgdyq-s~rl~i~y~~~~~~------~n-~tg~a~~Rli~Alle~~~~~~Gi~lP~~L~p~~ 206 (1083)
+.+++.+++++. .||+ ++|++++|.+.++. ++ +...+++|+|++|++++. | .+|..++|..
T Consensus 372 algr~~q~~Tiq--ldf~lp~rf~Ley~~~~~~~~~pv~ihr~~~GgiERli~iL~e~~~---G-~~P~wlaP~q 440 (545)
T PRK14799 372 SLGRWWQLSTIQ--VDFNLPERFKLEYIDKDGIKKRPVMVHRAIYGSIDRFVAILLEHFK---G-KLPTWLSSVQ 440 (545)
T ss_pred hcCchhhhhhhh--hhcCcccccceEEEcCCCCCcccEEEEccCCCCHHHHHHHHHHHcC---C-CCCCCCCCce
Confidence 788899999887 6677 99999999876552 34 455588999999888752 3 3776677664
No 57
>PRK12305 thrS threonyl-tRNA synthetase; Reviewed
Probab=99.55 E-value=1.5e-15 Score=185.62 Aligned_cols=183 Identities=16% Similarity=0.219 Sum_probs=134.5
Q ss_pred CCCCCCCCeeEecCChHHHHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHH
Q psy11602 13 PEKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDES 92 (1083)
Q Consensus 13 ~~dr~~~~~~L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s 92 (1083)
+.|+.++.++|+||++.+++.+++++..++++||+|+++++++||+|... +++||+|+|||++.+++.|+.++ .+
T Consensus 255 ~~d~~~~~~~LRP~~~~~~~~~~~~~~~s~~~lP~r~~~~g~~fR~E~~~---~~~Gl~R~reF~q~~~~if~~~~--~~ 329 (575)
T PRK12305 255 PMEIDEEEYYLKPMNCPGHILIYKSRLRSYRDLPLRLAEFGTVYRYEKSG---VLHGLTRVRGFTQDDAHIFCTPD--QI 329 (575)
T ss_pred ccccCCceEEEecCCCHHHHHHHhcccCChhhCCHhhEEecccccCCCCC---CCcCcccccCeEEcceEEEeCHH--HH
Confidence 34778899999999999999999999999999999999999999999942 57899999999999999999765 47
Q ss_pred HHHHHHHHHHHHHHHHHcCCceEEEEeccCC----CCcccce----------------------------eEeEEEEec-
Q psy11602 93 WKMLDEMIQNSEEFYADLGIAYRVVNIVSGA----LNHAAAK----------------------------KLDLEAWFP- 139 (1083)
Q Consensus 93 ~~~~~~~~~~y~~if~~LgLpyrvv~~~sgd----lg~~as~----------------------------~~diE~~~P- 139 (1083)
.+.+.+++..+.++|+.|||+...+.+.+++ +|..... .-.+|+.+.
T Consensus 330 ~~e~~e~i~l~~~~~~~lgl~~~~i~l~~r~~~~~~g~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~y~~~~~~~~~d 409 (575)
T PRK12305 330 EDEILKVLDFVLELLKDFGFKDYYLELSTREPEKYVGDDEVWEKATEALREALEELGLEYVEDPGGAAFYGPKIDVQIKD 409 (575)
T ss_pred HHHHHHHHHHHHHHHHHcCCCeEEEEEeCCChhhccCCHHHHHHHHHHHHHHHHhcCCCcEecCCCcccccccEEEEeec
Confidence 8888999999999999999997778888876 2322110 000111111
Q ss_pred CCCceeEEEEcCCCchh-hhhcccceeccCCCc-----c--ccccccchhheeheeccccCCCeeEecccccccc
Q psy11602 140 GSGAFRELVSCSNCLDY-QSRRLLVRYGQTKQK-----I--YATACATTRVICAILETHQTETGVRIPDCLRKFV 206 (1083)
Q Consensus 140 ~~~~~~ev~s~s~cgdy-qs~rl~i~y~~~~~~-----~--n~tg~a~~Rli~Alle~~~~~~Gi~lP~~L~p~~ 206 (1083)
+.++..++++.. .|| .+.+++++|.+.++. | .+.+.+++|+|++|+|.+.+ .||..++|+.
T Consensus 410 ~~g~~~~~~t~~--~~~~~~~~fdl~y~~~~~~~~~p~~ih~~~~G~~eRl~~~l~e~~~~----~~p~~~~p~~ 478 (575)
T PRK12305 410 ALGREWQMSTIQ--LDFNLPERFDLEYTAEDGKRQRPVMIHRALFGSIERFIGILTEHYAG----AFPFWLAPVQ 478 (575)
T ss_pred cCCCceecccee--eecccHhhCCCEEECCCCCccCceEEEccccccHHHHHHHHHHHhCC----CCCCCCCCcc
Confidence 112222222221 222 357899999766543 2 23334789999999997543 6777677764
No 58
>PLN02908 threonyl-tRNA synthetase
Probab=99.53 E-value=8.9e-15 Score=181.50 Aligned_cols=181 Identities=18% Similarity=0.242 Sum_probs=129.1
Q ss_pred CCCCCeeEecCChHHHHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHHHHH
Q psy11602 16 DELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESWKM 95 (1083)
Q Consensus 16 r~~~~~~L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s~~~ 95 (1083)
..+++++|+||+|.+++.+|++++.||++||+|+|++++|||+|++++ ++||+|+|||+|.|++.|+.++ ++++.
T Consensus 372 ~~~~~~~Lrp~~~~~~~~~~~~~~~s~r~LPlr~~~~g~~fR~E~~~~---l~Gl~RvReF~q~d~~if~~~~--q~~~e 446 (686)
T PLN02908 372 IEKQEFGLKPMNCPGHCLMFAHRVRSYRELPLRLADFGVLHRNELSGA---LTGLTRVRRFQQDDAHIFCRED--QIKDE 446 (686)
T ss_pred cCCeeEEEcCCCcHHHHHHHhccccChhhCCHhHEEeeccccCCCCcC---CcCccccccEEEeeEEEEcCHH--HHHHH
Confidence 456889999999999999999999999999999999999999999653 8899999999999999999985 49999
Q ss_pred HHHHHHHHHHHHHHcCCceEEEEeccCCCCcccceeE--------------eEEEEe--cCCCc------ee----EEEE
Q psy11602 96 LDEMIQNSEEFYADLGIAYRVVNIVSGALNHAAAKKL--------------DLEAWF--PGSGA------FR----ELVS 149 (1083)
Q Consensus 96 ~~~~~~~y~~if~~LgLpyrvv~~~sgdlg~~as~~~--------------diE~~~--P~~~~------~~----ev~s 149 (1083)
++++++.+..+|+.||++|++....-.+...+....+ +.. |- |+++. .. .+..
T Consensus 447 ~~~~l~~~~~v~~~lG~~~~~~ls~r~~~~~g~~~~w~~ae~~l~~~ld~~~~~-~~~~~g~~afygpkid~~~~d~l~r 525 (686)
T PLN02908 447 VKGVLDFLDYVYEVFGFTYELKLSTRPEKYLGDLETWDKAEAALTEALNAFGKP-WQLNEGDGAFYGPKIDITVSDALKR 525 (686)
T ss_pred HHHHHHHHHHHHHHCCCcEEEEEeCCccccCCCHHHHHHHHHHHHHHHHHcCCC-cEECCCceeecccceEEEEEeccCC
Confidence 9999999999999999999985443222111111111 111 11 22221 11 1112
Q ss_pred cCCC----chhh-hhcccceeccCCCc-------c-ccccccchhheeheeccccCCCeeEecccccccc
Q psy11602 150 CSNC----LDYQ-SRRLLVRYGQTKQK-------I-YATACATTRVICAILETHQTETGVRIPDCLRKFV 206 (1083)
Q Consensus 150 ~s~c----gdyq-s~rl~i~y~~~~~~-------~-n~tg~a~~Rli~Alle~~~~~~Gi~lP~~L~p~~ 206 (1083)
...| .||+ ..+|++.|-+.++. + .+...++.|++++|++++. -.+|..+.|..
T Consensus 526 ~~~~~t~q~df~lp~~f~L~Y~~e~~~~~~~pv~ihrai~GsiERli~iL~e~~~----g~~p~wlsp~q 591 (686)
T PLN02908 526 KFQCATVQLDFQLPIRFKLSYSAEDEAKIERPVMIHRAILGSVERMFAILLEHYA----GKWPFWLSPRQ 591 (686)
T ss_pred EeeccceeecccCHhhcCCEEECCCCCcCCCCEEEEeCceEhHHHHHHHHHHHcC----CCCCCCCCCce
Confidence 2333 3343 36789998765321 4 3344478999999999743 25665566553
No 59
>PRK09194 prolyl-tRNA synthetase; Provisional
Probab=99.51 E-value=1.3e-14 Score=176.60 Aligned_cols=171 Identities=19% Similarity=0.265 Sum_probs=135.8
Q ss_pred ecccccccccccccCCCCccccccCcccchHHHHHHhhhhcccchhhhhhhhhccccccccccCceEeeeccceEEEEee
Q psy11602 198 IPDCLRKFVPAVYLNEAGEIPFVKTAPIDEEETKKQKKQKEGMKKKLTMSLFSQVGSHGRDTRGIFRVHQFEKVEQFVLT 277 (1083)
Q Consensus 198 lP~~L~p~~~~~~~~~~G~~pv~~P~~i~~d~~~~~~~k~~~~k~~~~~~~~~e~g~h~~dl~~i~Rv~qfd~~~~~~~~ 277 (1083)
+-.+|..++.+.+. ..||.++..|+++..+.- ...++...+++ .+|++..... +++.+.
T Consensus 49 ~~~~i~~~i~~~~~-~~G~~ei~~P~l~~~~l~----------------~~sg~~~~~~~---emf~~~d~~~-~~l~Lr 107 (565)
T PRK09194 49 VLRKIENIVREEMN-KIGAQEVLMPALQPAELW----------------QESGRWEEYGP---ELLRLKDRHG-RDFVLG 107 (565)
T ss_pred HHHHHHHHHHHHHH-HcCCEEEECcccCcHHHH----------------hhcCCccccch---hceEEecCCC-CEEEEC
Confidence 33666777766664 789999999999995444 22234444444 4677643221 122222
Q ss_pred CC-----------CCCcchhhhh-hhhccccccccc-ccCcCceeEEEeeeEEEEEEeCCCchhHHHHHHHHHHHHHHHH
Q psy11602 278 SP-----------HDDESWKMLD-EMIQNSEEFYAD-LDTRGIFRVHQFEKVEQFVLTSPHDDESWKTLDEMIQNSEEFY 344 (1083)
Q Consensus 278 ~~-----------~~~~s~~~~~-~~~~~~~~~~~~-~~trGl~Rvhqf~kvE~f~~~~~~~~~s~~~~e~~~~~~e~~~ 344 (1083)
| +.-.||++|| ++++...+||+. +..+||+|+|||.+++.+.|+.++ +++++.+++|++.+.++|
T Consensus 108 -Pt~e~~~~~~~~~~~~s~~~LP~r~yqi~~~fR~E~rp~~Gl~R~reF~q~d~~~f~~~~-~~a~~~~~~~~~~~~~i~ 185 (565)
T PRK09194 108 -PTHEEVITDLVRNEIKSYKQLPLNLYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFHADE-ESLDETYDAMYQAYSRIF 185 (565)
T ss_pred -CCChHHHHHHHHhhhhhcccCCeEEEEeeCCccCCCCCCCcccccccEEEeeEEEEcCCh-HHHHHHHHHHHHHHHHHH
Confidence 2 1123688999 999999999998 888999999999999999999875 577889999999999999
Q ss_pred HHhCCcEEEEeccCCCcchhhhceeeEEEeeCCCCcEEeeecccCccccccc
Q psy11602 345 ADLGIAYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLAYQSR 396 (1083)
Q Consensus 345 ~~L~lpyRvv~~~~~dl~~~a~~~~DiE~w~P~~~~y~Ev~S~sn~~d~qar 396 (1083)
+.|||||+++..++|+||..++++| |+|++..|.||+||+||+ |.|.
T Consensus 186 ~~lgl~~~~~~~~~g~~gg~~s~e~----~~~~~~g~~~~~~c~~c~-~~~n 232 (565)
T PRK09194 186 DRLGLDFRAVEADSGAIGGSASHEF----MVLADSGEDTIVYSDESD-YAAN 232 (565)
T ss_pred HHhCCccEEEEcccccCCCceeEEE----EEecCCCceEEEEeCCCC-cchh
Confidence 9999999999999999999999999 999999999999999996 5544
No 60
>PRK04173 glycyl-tRNA synthetase; Provisional
Probab=99.49 E-value=3.3e-14 Score=168.55 Aligned_cols=167 Identities=22% Similarity=0.272 Sum_probs=140.0
Q ss_pred Ccchh-hhh-hhhccccccccccc-CcCceeEEEeeeEEEEEEeCCCchhHHHHHHHHHHHHHHHHHHhCCc---EEEEe
Q psy11602 282 DESWK-MLD-EMIQNSEEFYADLD-TRGIFRVHQFEKVEQFVLTSPHDDESWKTLDEMIQNSEEFYADLGIA---YRVVN 355 (1083)
Q Consensus 282 ~~s~~-~~~-~~~~~~~~~~~~~~-trGl~Rvhqf~kvE~f~~~~~~~~~s~~~~e~~~~~~e~~~~~L~lp---yRvv~ 355 (1083)
-.||+ +|| ++.+...|||.... ..||+|||+|++.|.-.||+| +++.+++..++....++|+.||++ ||+..
T Consensus 178 ~~syr~dLPlr~aq~g~~~RnE~s~~~gL~RvReF~q~e~hiF~~p--eq~~~e~~~~l~~~~~~l~~lG~~~~~~~~s~ 255 (456)
T PRK04173 178 LRTARKKLPFGIAQIGKSFRNEITPRNFIFRTREFEQMELEFFVKP--GTDNEWFAYWIELRKNWLLDLGIDPENLRFRE 255 (456)
T ss_pred HHhccccCCeeeeEEchhHhCccCCCCCceeeceeeeeEEEEEECc--ChHHHHHHHHHHHHHHHHHHcCCCccceEEEe
Confidence 35899 999 88889999998433 479999999999999999999 578999999999999999999999 88888
Q ss_pred ccCCCcchhhhceeeEEEeeCCCCcEEeeecccCccccccc------ccceEEecccCCCCceeeEEeecccccchhHHH
Q psy11602 356 IVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLAYQSR------RLLVRYGQTKKMNEKIEFVHMLNATACATTRVI 429 (1083)
Q Consensus 356 ~~~~dl~~~a~~~~DiE~w~P~~~~y~Ev~S~sn~~d~qar------rl~iry~~~~~~~~~~~~~htln~t~~a~~R~i 429 (1083)
.+..++...+...+|+|+++|....|.|++++.+-+||+-. |.++.|.+.. .+++...+|++ +.++.++|++
T Consensus 256 ~~~~e~~~ys~~~wd~e~~~~~g~~~~e~~g~~~~~dydL~~~~~~s~~dl~y~~~~-~~~~~~~P~vi-~~siGieRl~ 333 (456)
T PRK04173 256 HLPEELAHYSKATWDIEYKFPFGRFWGELEGIANRTDYDLSRHSKHSGEDLSYFDDE-TTGEKYIPYVI-EPSAGLDRLL 333 (456)
T ss_pred cCcchhhccHHHHHhHHHhCCCCCcEEEEeeeeccchhhcccchhhcCCCeEEEecC-CCCceeeeEEE-EecccHHHHH
Confidence 88889999999999999999976679999999999999866 4788887321 14456789999 5557999999
Q ss_pred HHHHhhccCCC---------ceecCccccccC
Q psy11602 430 CAILETHQTET---------GVRIPDCLRKFV 452 (1083)
Q Consensus 430 ~ailEn~q~~~---------Gi~iP~~L~py~ 452 (1083)
+|||+.+-.++ |+++|..|+|+-
T Consensus 334 ~ail~~~~~~~~~~~~~~r~~l~~P~~lAP~q 365 (456)
T PRK04173 334 LAFLEDAYTEEELGGGDKRTVLRLPPALAPVK 365 (456)
T ss_pred HHHHHHHcccccccCCcceeEEECCCcCCCCE
Confidence 99877664331 378999999874
No 61
>TIGR00409 proS_fam_II prolyl-tRNA synthetase, family II. Prolyl-tRNA synthetase is a class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes tRNA synthetases for Gly, His, Ser, and Pro. The prolyl-tRNA synthetases are divided into two widely divergent groups. This group includes enzymes from Escherichia coli, Bacillus subtilis, Aquifex aeolicus, the spirochete Treponema pallidum, Synechocystis PCC6803, and one of the two prolyL-tRNA synthetases of Saccharomyces cerevisiae. The other group includes the Pro-specific domain of a human multifunctional tRNA ligase and the prolyl-tRNA synthetases from the Archaea, the Mycoplasmas, and the spirochete Borrelia burgdorferi.
Probab=99.47 E-value=4.5e-14 Score=171.22 Aligned_cols=197 Identities=19% Similarity=0.262 Sum_probs=145.2
Q ss_pred eEecccccccccccccCCCCccccccCcccchHHHHHHhhhhcccchhhhhhhhhccccccccccCceEeeeccceEEEE
Q psy11602 196 VRIPDCLRKFVPAVYLNEAGEIPFVKTAPIDEEETKKQKKQKEGMKKKLTMSLFSQVGSHGRDTRGIFRVHQFEKVEQFV 275 (1083)
Q Consensus 196 i~lP~~L~p~~~~~~~~~~G~~pv~~P~~i~~d~~~~~~~k~~~~k~~~~~~~~~e~g~h~~dl~~i~Rv~qfd~~~~~~ 275 (1083)
.++-.+|..++.+.+. ..||.++..|++...+..++. ++...++. +||++..-.. +++.
T Consensus 47 ~rv~~~I~~~i~~~~~-~~G~~ei~~P~l~~~el~~~s----------------g~~~~~~~---emf~~~dr~~-~~l~ 105 (568)
T TIGR00409 47 LRVLKKVENIVREEMN-KDGAIEVLLPALQPAELWQES----------------GRWDTYGP---ELLRLKDRKG-REFV 105 (568)
T ss_pred HHHHHHHHHHHHHHHH-HcCCEEEECCccchHHHHhhc----------------CCCCccch---hcEEEecCCC-CEEE
Confidence 3334666777666664 789999999999995555332 23333344 5677653221 1222
Q ss_pred eeCCC-----------CCcchhhhh-hhhccccccccc-ccCcCceeEEEeeeEEEEEEeCCCchhHHHHHHHHHHHHHH
Q psy11602 276 LTSPH-----------DDESWKMLD-EMIQNSEEFYAD-LDTRGIFRVHQFEKVEQFVLTSPHDDESWKTLDEMIQNSEE 342 (1083)
Q Consensus 276 ~~~~~-----------~~~s~~~~~-~~~~~~~~~~~~-~~trGl~Rvhqf~kvE~f~~~~~~~~~s~~~~e~~~~~~e~ 342 (1083)
+ .|. .-.||++|| ++++...+||+. +..+||+|+|||.+++++.|+.++ +++.+.++.|++.+.+
T Consensus 106 L-rPT~Ee~~t~~~~~~i~syr~LPlrlyqi~~~fR~E~rpr~Gl~R~REF~~~d~~~f~~~~-~~a~~e~~~~~~~y~~ 183 (568)
T TIGR00409 106 L-GPTHEEVITDLARNEIKSYKQLPLNLYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFHSDE-ESLDATYQKMYQAYSN 183 (568)
T ss_pred E-cCCCcHHHHHHHHHHHhhccccCeEEEEeeCEeeCCCCCCCCccccccEEEEEEEEEeCCh-HHHHHHHHHHHHHHHH
Confidence 2 231 123678899 999999999998 888999999999999999999985 6778899999999999
Q ss_pred HHHHhCCcEEEEeccCCCcchhhhceeeEEEeeCCCCcEEeeecccCcccccccccceEEeccc----CCCCceeeEEee
Q psy11602 343 FYADLGIAYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLAYQSRRLLVRYGQTK----KMNEKIEFVHML 418 (1083)
Q Consensus 343 ~~~~L~lpyRvv~~~~~dl~~~a~~~~DiE~w~P~~~~y~Ev~S~sn~~d~qarrl~iry~~~~----~~~~~~~~~htl 418 (1083)
||+.|||||++|..++|+||.++++.||+|++ ..+.||+||| |.||||. +..-..... ......+-+||.
T Consensus 184 if~~LgL~~~~v~~~~g~~gg~~s~ef~~~~~----~ge~~i~~c~-~~~y~an-~e~a~~~~~~~~~~~~~~~~~~~tp 257 (568)
T TIGR00409 184 IFSRLGLDFRPVQADSGAIGGSASHEFMVLAE----SGEDTIVYSD-ESDYAAN-IELAEALAPGERNAPTAELDKVDTP 257 (568)
T ss_pred HHHHhCCcceEEEeccccCCCccceEEeEecC----CCceEEEEec-Ccccchh-hhhhcccCccccccccccceeecCC
Confidence 99999999999999999999999999999974 4569999999 8899995 333221100 001124667888
Q ss_pred ccc
Q psy11602 419 NAT 421 (1083)
Q Consensus 419 n~t 421 (1083)
|.+
T Consensus 258 ~~~ 260 (568)
T TIGR00409 258 NTK 260 (568)
T ss_pred CCC
Confidence 654
No 62
>cd00774 GlyRS-like_core Glycyl-tRNA synthetase (GlyRS)-like class II core catalytic domain. GlyRS functions as a homodimer in eukaryotes, archaea and some bacteria and as a heterotetramer in the remainder of prokaryotes. It is responsible for the attachment of glycine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP binding and hydrolysis. This alignment contains only sequences from the GlyRS form which homodimerizes. The heterotetramer glyQ is in a different family of class II aaRS. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. This domain is also found at the N-terminus of the accessory subunit of mitochondrial polymerase gamma (Pol gamma b). Pol gamma b stimulates processive DNA synthesis and is functional as a homodimer, which can associate with the catalytic subunit Pol gamma alpha to form a heterotrimer. Despite significant both structural and sequence similarity with Gly
Probab=99.35 E-value=2.2e-13 Score=150.30 Aligned_cols=135 Identities=22% Similarity=0.284 Sum_probs=110.6
Q ss_pred CCCCCCeeEec-CChHHHHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHHH
Q psy11602 15 KDELDDKYLIA-TSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESW 93 (1083)
Q Consensus 15 dr~~~~~~L~p-TsE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s~ 93 (1083)
|+.+++++|+| |++..++.+.+....+.++||+++|||+++||+|+ +++.||+|+|||++.|++.|+.++. +.
T Consensus 75 d~~~~~~~Lrp~~~~~~~~~~~~~~~~~~~~lP~~~~qig~~fR~E~----~~~~gl~R~ReF~q~d~~~f~~~~~--~~ 148 (254)
T cd00774 75 ESGGNLGYLRPETAQGIFVNFKNLLEFNRRKLPFGVAQIGKSFRNEI----SPRNGLFRVREFTQAEIEFFVDPEK--SH 148 (254)
T ss_pred CCCCcccccCCcccchHHHHHHHHHHHhCCCCCchhhhhchhhcccc----CcccceeeeccchhhheeeeECCCC--ch
Confidence 33456899999 56656666655444445699999999999999999 3447999999999999999998874 89
Q ss_pred HHHHHHHHHHHHHHHHcCC---ceEEEEeccCCCCcccceeEeEEEEecCCCceeEEEEcCCCchhh
Q psy11602 94 KMLDEMIQNSEEFYADLGI---AYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQ 157 (1083)
Q Consensus 94 ~~~~~~~~~y~~if~~LgL---pyrvv~~~sgdlg~~as~~~diE~~~P~~~~~~ev~s~s~cgdyq 157 (1083)
+.|+.+++++.+||+++|+ .+|....++.+++.-+...+|+++..| .+|.|+.-+++-++++
T Consensus 149 e~~~~v~~~~~~~l~~~G~~~~~~r~~~~~~~e~a~ya~~~~d~~~~~~--~~w~e~~Gi~~~~~~~ 213 (254)
T cd00774 149 PWFDYWADQRLKWLPKFAQSPENLRLTDHEKEELAHYANETLDYFYAFP--HGFLELEGIANRGDRF 213 (254)
T ss_pred HHHHHHHHHHHHHHHHcCCCccceEEEecccHhhhhhhHHHHHHHHHHh--hhHHHHcCCCcchhHH
Confidence 9999999999999999994 468888888899988888889887775 4677877777777664
No 63
>PRK14799 thrS threonyl-tRNA synthetase; Provisional
Probab=99.34 E-value=1.7e-12 Score=156.43 Aligned_cols=221 Identities=14% Similarity=0.209 Sum_probs=144.3
Q ss_pred ecccccccccccccCCCCccccccCcccchHHHHHHhhhhcccchhhhhhhhhccccccccccCceEeeecc-ceEEEEe
Q psy11602 198 IPDCLRKFVPAVYLNEAGEIPFVKTAPIDEEETKKQKKQKEGMKKKLTMSLFSQVGSHGRDTRGIFRVHQFE-KVEQFVL 276 (1083)
Q Consensus 198 lP~~L~p~~~~~~~~~~G~~pv~~P~~i~~d~~~~~~~k~~~~k~~~~~~~~~e~g~h~~dl~~i~Rv~qfd-~~~~~~~ 276 (1083)
|-..|..|+-+.+. ..||.||..|.+.+.+..+. .++.+.+.+ .||.+...+ ....-+-
T Consensus 170 i~~~L~~~~r~~~~-~~Gy~eV~TP~i~~~eL~k~----------------SGh~~~y~~---~mf~~~~~~e~~~LrPm 229 (545)
T PRK14799 170 IRNELIAFMREIND-SMGYQEVYTSHVFKTDIWKI----------------SGHYTLYRD---KLIVFNMEGDEYGVKPM 229 (545)
T ss_pred HHHHHHHHHHHHHH-HcCCeEEECCccchHHHHhh----------------ccccccchh---hcceeeccCceEEeccC
Confidence 33667777766664 78999999999888555533 233333333 344332111 1111111
Q ss_pred eC-------CCCCcchhhhh-hhhccccccccccc--CcCceeEEEeee-------------------------------
Q psy11602 277 TS-------PHDDESWKMLD-EMIQNSEEFYADLD--TRGIFRVHQFEK------------------------------- 315 (1083)
Q Consensus 277 ~~-------~~~~~s~~~~~-~~~~~~~~~~~~~~--trGl~Rvhqf~k------------------------------- 315 (1083)
.- .+...||++|| ++++...|||+.+. ++||+|+|+|++
T Consensus 230 ~cp~~~~~~~~~~~SyrdLPlR~~e~g~vfR~E~sg~l~GL~RvReF~Q~DaHif~~~~q~~~E~~~~l~~i~~vy~~fG 309 (545)
T PRK14799 230 NCPAHILIYKSKPRTYRDLPIRFSEFGHVYRWEKKGELYGLLRVRGFVQDDGHIFLREDQLREEIKMLISKTVEVWHKFG 309 (545)
T ss_pred CCHHHHHHHhccccChhhCCHhhEEecceecCCCCCCccccccceeEEEcccEEEeCHHHHHHHHHHHHHHHHHHHHHhC
Confidence 11 11245899999 99999999999544 789999999999
Q ss_pred -----EEEEEEeCCCch-hHHHHHHHHHHHHHHHHHHhCCcEEEEeccCCCcchhhhceeeEEEeeCCCCcEEeeecccC
Q psy11602 316 -----VEQFVLTSPHDD-ESWKTLDEMIQNSEEFYADLGIAYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSN 389 (1083)
Q Consensus 316 -----vE~f~~~~~~~~-~s~~~~e~~~~~~e~~~~~L~lpyRvv~~~~~dl~~~a~~~~DiE~w~P~~~~y~Ev~S~sn 389 (1083)
+++...+.|++. .+.+..+++.+..+++|+++||||++........ ..++|+++ .++.+++.++++++
T Consensus 310 ~~~~~~~i~ls~Rpe~~~G~~~~wdka~~~l~~~L~~~gl~~~~~~g~gafy----gpkiD~~v-~dalgr~~q~~Tiq- 383 (545)
T PRK14799 310 FKDDDIKPYLSTRPDESIGSDELWEKATNALISALQESGLKFGIKEKEGAFY----GPKIDFEI-RDSLGRWWQLSTIQ- 383 (545)
T ss_pred CCcccEEEEEEcChhhhcCCHHHHHHHHHHHHHHHHHcCCCeEEecceeccc----cCccceEe-hhhcCchhhhhhhh-
Confidence 444444555210 1234556666667777777777777765432222 24889999 89999999999998
Q ss_pred ccccc-ccccceEEecccCCCCceeeEEeecccccchhHHHHHHHhhccCCCceecCcccccc
Q psy11602 390 CLAYQ-SRRLLVRYGQTKKMNEKIEFVHMLNATACATTRVICAILETHQTETGVRIPDCLRKF 451 (1083)
Q Consensus 390 ~~d~q-arrl~iry~~~~~~~~~~~~~htln~t~~a~~R~i~ailEn~q~~~Gi~iP~~L~py 451 (1083)
.||| ++|+++.|.+..+.....-.+|+ |..-.+.|+|++|+|+|+ | .+|..+.|.
T Consensus 384 -ldf~lp~rf~Ley~~~~~~~~~pv~ihr--~~~GgiERli~iL~e~~~---G-~~P~wlaP~ 439 (545)
T PRK14799 384 -VDFNLPERFKLEYIDKDGIKKRPVMVHR--AIYGSIDRFVAILLEHFK---G-KLPTWLSSV 439 (545)
T ss_pred -hhcCcccccceEEEcCCCCCcccEEEEc--cCCCCHHHHHHHHHHHcC---C-CCCCCCCCc
Confidence 9999 99999999875321112346775 333368999998889763 4 377656654
No 64
>PRK00413 thrS threonyl-tRNA synthetase; Reviewed
Probab=99.34 E-value=5.6e-12 Score=156.20 Aligned_cols=181 Identities=17% Similarity=0.241 Sum_probs=129.5
Q ss_pred CCCCCCCeeEecCChHHHHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHHH
Q psy11602 14 EKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESW 93 (1083)
Q Consensus 14 ~dr~~~~~~L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s~ 93 (1083)
.|+.++.++|+|+.+.+++-++.++..+|++||+|+|+++++||+|... ..+||.|+|||++.+++.|+.++ .+.
T Consensus 320 ~d~~~~~~~LRP~~~~~~~r~~~~~~~s~~~lP~r~~~~g~~fR~E~~~---~~~Gl~R~reF~q~~~~~~g~~~--~~~ 394 (638)
T PRK00413 320 TESDGEEYALKPMNCPGHVQIYKQGLRSYRDLPLRLAEFGTVHRYEPSG---ALHGLMRVRGFTQDDAHIFCTPE--QIE 394 (638)
T ss_pred ecCCCcEEEEecCCcHHHHHHHhCcCCChhhCCceeeeccCeecCCCCC---CCcCcceeeeeEEeeEEEEcCHH--HHH
Confidence 5888899999999999999999999999999999999999999999952 36799999999999999998765 366
Q ss_pred HHHHHHHHHHHHHHHHcCCceEEEEecc---CCCCcccc------------------------------eeEeEEEEecC
Q psy11602 94 KMLDEMIQNSEEFYADLGIAYRVVNIVS---GALNHAAA------------------------------KKLDLEAWFPG 140 (1083)
Q Consensus 94 ~~~~~~~~~y~~if~~LgLpyrvv~~~s---gdlg~~as------------------------------~~~diE~~~P~ 140 (1083)
+.+.+++..+.++|+.|||+-..+.+.+ +.+|.... .++|+.+ ..+
T Consensus 395 ~e~~eii~l~~~~~~~lg~~~~~i~l~~r~~~~~g~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~~~-~~~ 473 (638)
T PRK00413 395 EEVKKVIDLILDVYKDFGFEDYEVKLSTRPEKRIGSDEMWDKAEAALKEALDELGLDYEIAPGEGAFYGPKIDFQL-KDA 473 (638)
T ss_pred HHHHHHHHHHHHHHHHcCCceEEEEEecCCcccCCCHHHHHHHHHHHHHHHHHcCCCceecCCccccccceEEEEe-ecC
Confidence 7789999999999999999533334443 33443321 0111111 111
Q ss_pred CCceeEEEEcCCCchh-hhhcccceeccCCCc-----c--ccccccchhheeheeccccCCCeeEecccccccc
Q psy11602 141 SGAFRELVSCSNCLDY-QSRRLLVRYGQTKQK-----I--YATACATTRVICAILETHQTETGVRIPDCLRKFV 206 (1083)
Q Consensus 141 ~~~~~ev~s~s~cgdy-qs~rl~i~y~~~~~~-----~--n~tg~a~~Rli~Alle~~~~~~Gi~lP~~L~p~~ 206 (1083)
.++..++++.. .|| ..++|++.|.+..+. + .+.+.+++|+|++|++.+.+ .||..++|..
T Consensus 474 ~~~~~~l~~~~--~d~~~~~~~dl~Yt~~~~~~~~p~~i~~~~~g~~eRli~~l~e~~~~----~~p~~~~p~~ 541 (638)
T PRK00413 474 LGREWQCGTIQ--LDFNLPERFDLTYVGEDGEKHRPVMIHRAILGSMERFIGILIEHYAG----AFPTWLAPVQ 541 (638)
T ss_pred CCCeEEeccEe--ecccChhhcCCEEECCCCCccCcEEEEecceehHHHHHHHHHHHcCC----CCCcccCcce
Confidence 22323332221 223 257888888765442 3 34455789999999997643 4776677664
No 65
>PRK12444 threonyl-tRNA synthetase; Reviewed
Probab=99.26 E-value=4.8e-12 Score=156.61 Aligned_cols=221 Identities=11% Similarity=0.161 Sum_probs=143.6
Q ss_pred ccccccccccccCCCCccccccCcccchHHHHHHhhhhcccchhhhhhhhhccccccccccCceEeeecc------ceEE
Q psy11602 200 DCLRKFVPAVYLNEAGEIPFVKTAPIDEEETKKQKKQKEGMKKKLTMSLFSQVGSHGRDTRGIFRVHQFE------KVEQ 273 (1083)
Q Consensus 200 ~~L~p~~~~~~~~~~G~~pv~~P~~i~~d~~~~~~~k~~~~k~~~~~~~~~e~g~h~~dl~~i~Rv~qfd------~~~~ 273 (1083)
..|..++...+. ..||.+|..|+++..+...+.+ +.+.+.+ ++|-+...+ ++..
T Consensus 278 ~~i~~~~~~~~~-~~G~~~v~tP~l~~~~l~~~sG----------------~~~~~~~---emy~~d~~~~~~~LrP~~~ 337 (639)
T PRK12444 278 NELEAFLREIQK-EYNYQEVRTPFMMNQELWERSG----------------HWDHYKD---NMYFSEVDNKSFALKPMNC 337 (639)
T ss_pred HHHHHHHHHHHH-HcCCEEEECCccCCHHHHhhcC----------------Chhhhhh---hcCeecCCCcEEEEccCCC
Confidence 445666666663 7899999999999966654432 3333333 333110000 1111
Q ss_pred EEeeC--CCCCcchhhhh-hhhccccccccccc--CcCceeEEEeeeEEEEEEeCCCchhHHHHHHHHHHHHHHHHHHhC
Q psy11602 274 FVLTS--PHDDESWKMLD-EMIQNSEEFYADLD--TRGIFRVHQFEKVEQFVLTSPHDDESWKTLDEMIQNSEEFYADLG 348 (1083)
Q Consensus 274 ~~~~~--~~~~~s~~~~~-~~~~~~~~~~~~~~--trGl~Rvhqf~kvE~f~~~~~~~~~s~~~~e~~~~~~e~~~~~L~ 348 (1083)
..++. .+.-.||++|| ++++...|||+.+. ++||+|+|||+++|...++.+ +++++.+++++..++++|+.||
T Consensus 338 ~~~~~~~~~~~~sy~~LP~r~~~~g~~fR~E~~~~~~Gl~R~reF~q~d~~~f~~~--~~~~~e~~~~~~~~~~i~~~lg 415 (639)
T PRK12444 338 PGHMLMFKNKLHSYRELPIRMCEFGQVHRHEFSGALNGLLRVRTFCQDDAHLFVTP--DQIEDEIKSVMAQIDYVYKTFG 415 (639)
T ss_pred HHHHHHHhCcccChhhCCceeEEeccccCCCCCcCCcCcceeeeeEEccEEEECCH--HHHHHHHHHHHHHHHHHHHHcC
Confidence 11111 11234789999 99999999999774 889999999999999999999 5799999999999999999999
Q ss_pred CcEEEEeccCC---Ccch----------------------------hhhceeeEEEeeCCCCcEEeeecccCcccc-ccc
Q psy11602 349 IAYRVVNIVSG---ALNH----------------------------AAAKKLDLEAWFPGSGAFRELVSCSNCLAY-QSR 396 (1083)
Q Consensus 349 lpyRvv~~~~~---dl~~----------------------------~a~~~~DiE~w~P~~~~y~Ev~S~sn~~d~-qar 396 (1083)
|||++. +.+. -+|. +|+...-||+-+...+.-.-+.+- ...|| -+.
T Consensus 416 l~~~~~-~~~r~~~~~G~~e~~~~~~~~l~~~l~~~~~~y~~~~~~ga~Y~~~~e~~~~~~~~~~~~~~t-~~~d~~~~~ 493 (639)
T PRK12444 416 FEYEVE-LSTRPEDSMGDDELWEQAEASLENVLQSLNYKYRLNEGDGAFYGPKIDFHIKDALNRSHQCGT-IQLDFQMPE 493 (639)
T ss_pred CcEEEE-EECCccccCCCHHHHHHHHHHHHHHHHHcCCCceeccCCcccccceEEEEeecCCCChhcccc-eeeeccccc
Confidence 999963 3221 1222 445555666665542221111122 23555 678
Q ss_pred ccceEEecccCCCCceeeEEeeccc-ccchhHHHHHHHhhccCCCceecCcccccc
Q psy11602 397 RLLVRYGQTKKMNEKIEFVHMLNAT-ACATTRVICAILETHQTETGVRIPDCLRKF 451 (1083)
Q Consensus 397 rl~iry~~~~~~~~~~~~~htln~t-~~a~~R~i~ailEn~q~~~Gi~iP~~L~py 451 (1083)
|++++|.+. +++...++++.-+ +..+.|+|.+|+|++ |..+|..++|.
T Consensus 494 ~f~l~~~~~---~g~~~~P~i~~~~~~g~ieRli~~L~e~~----~~~~p~~~ap~ 542 (639)
T PRK12444 494 KFDLNYIDE---KNEKRRPVVIHRAVLGSLDRFLAILIEHF----GGAFPAWLAPV 542 (639)
T ss_pred ccceEEECC---CCCccccEEEEECCCCCHHHHHHHHHHhc----CCCCCCccCCc
Confidence 999999865 3444555444333 447899999999976 44677655554
No 66
>KOG1080|consensus
Probab=99.22 E-value=1.3e-11 Score=154.57 Aligned_cols=116 Identities=32% Similarity=0.715 Sum_probs=101.9
Q ss_pred CCccccccCCCCCCCCCcEEEcccCCcccccccccccccCCCcccCCCCCCCCcccccccCCCCCCceeecCCCCccccc
Q psy11602 690 KILVCCVCLGERSDDVNEIVECDSCGVTVHEGCYGVQDTASISSTVSSCSTEPWFCESCRAGIAEPTCELCPNFGENHLR 769 (1083)
Q Consensus 690 ~~~~C~VC~~~~~~~~n~iv~Cd~C~i~VH~~CYGv~~~~~~~~~~~~~~~~~W~Cd~C~~~~~~~~C~LCp~~g~~~~~ 769 (1083)
....|.+|...+....|.++.|+.|++.+|+.|||..... ....|+|+.|........|+||+.
T Consensus 572 ~t~~c~~~~~~~~~~~n~~~~~~~~~~~~~s~~~g~~~~~---------~~~~~~~~~~~~~~~~r~~~l~~~------- 635 (1005)
T KOG1080|consen 572 TTERCAVCRDDEDWEKNVSIICDRCTRSVHSECYGNLKSY---------DGTSWVCDSCETLDIKRSCCLCPV------- 635 (1005)
T ss_pred CcccccccccccccccceeeeeccccccCCCcccccCCCC---------CCCcchhhccccccCCchhhhccc-------
Confidence 3458999999888899999999999999999999997654 457899999998655678999999
Q ss_pred cccccccccchhhhhhhhccccccccCCCCCCCCCCcceeccCCceeecccccccCCcEEecccccCceeee-cCccCCc
Q psy11602 770 GLFENIKNGHAQRDRMRYHACHLRDSRDSSDGDRGGIFKETDVGKWVHLVCALYIPGVAFGEVDRLSNVTLF-EMPYSRW 848 (1083)
Q Consensus 770 ~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~galK~t~~~~WvHv~CAlw~pev~f~~~~~~~pv~~~-~ip~~r~ 848 (1083)
++||+++++.++|+|+.||.|.|++.+++...|.|.... .+|...+
T Consensus 636 ---------------------------------~g~al~p~d~gr~~~~e~a~~~~e~~~~~~~~~~p~~~~~~~p~~~~ 682 (1005)
T KOG1080|consen 636 ---------------------------------KGGALKPTDEGRWVHVECAWFRPEVCLASPERMEPAVGTFKIPALSF 682 (1005)
T ss_pred ---------------------------------cCcccCCCCccchhhhhchhccccccCCCccCCCCcccccccCccch
Confidence 789999999999999999999999999999999999876 5777777
Q ss_pred CCCcccc
Q psy11602 849 GAKSCAL 855 (1083)
Q Consensus 849 ~~~~C~i 855 (1083)
. ..|.+
T Consensus 683 ~-~~~~~ 688 (1005)
T KOG1080|consen 683 L-KICFI 688 (1005)
T ss_pred h-hhccc
Confidence 5 45666
No 67
>TIGR00418 thrS threonyl-tRNA synthetase. This model represents the threonyl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. Note that B. subtilis has closely related isozymes thrS and thrZ. The N-terminal regions are quite dissimilar between archaeal and eubacterial forms, while some eukaryotic forms are missing sequence there altogether..
Probab=99.19 E-value=2.2e-11 Score=148.78 Aligned_cols=219 Identities=15% Similarity=0.219 Sum_probs=147.7
Q ss_pred ccccccccccccCCCCccccccCcccchHHHHHHhhhhcccchhhhhhhhhccccccccccCceEeeecc---------c
Q psy11602 200 DCLRKFVPAVYLNEAGEIPFVKTAPIDEEETKKQKKQKEGMKKKLTMSLFSQVGSHGRDTRGIFRVHQFE---------K 270 (1083)
Q Consensus 200 ~~L~p~~~~~~~~~~G~~pv~~P~~i~~d~~~~~~~k~~~~k~~~~~~~~~e~g~h~~dl~~i~Rv~qfd---------~ 270 (1083)
.+|..++.+.+. ..||.+|..|+++..+..... ++.+.+.+ .||++..-+ .
T Consensus 204 ~~i~~~~~~~~~-~~G~~ev~tP~l~~~~l~~~s----------------g~~~~~~~---emy~~~d~~~~~~~LrP~~ 263 (563)
T TIGR00418 204 NLLEDFVRQKQI-KYGYMEVETPIMYDLELWEIS----------------GHWDNYKE---RMFPFTELDNREFMLKPMN 263 (563)
T ss_pred HHHHHHHHHHHH-HcCCEEEECCccCCHHHHHhc----------------CCcccchh---hcceeccCCCceEEEecCC
Confidence 555666655553 789999999999995555332 23333333 344432211 1
Q ss_pred eEEEEeeCCCCCcchhhhh-hhhccccccccccc--CcCceeEEEeeeEEEEEEeCCCchhHHHHHHHHHHHHHHHHHHh
Q psy11602 271 VEQFVLTSPHDDESWKMLD-EMIQNSEEFYADLD--TRGIFRVHQFEKVEQFVLTSPHDDESWKTLDEMIQNSEEFYADL 347 (1083)
Q Consensus 271 ~~~~~~~~~~~~~s~~~~~-~~~~~~~~~~~~~~--trGl~Rvhqf~kvE~f~~~~~~~~~s~~~~e~~~~~~e~~~~~L 347 (1083)
+..+.....+...||++|| ++++...+||+... ++||+|+|||+++|+..++.+ +++++.+++++..+.++|+.|
T Consensus 264 ~~~i~~~~~~~~~s~~~lP~rl~~~g~~fR~E~~g~~~Gl~R~reF~q~~~~~~~~~--~~~~~e~~~~i~~~~~~~~~l 341 (563)
T TIGR00418 264 CPGHFLIFKSSLRSYRDLPLRIAELGYSHRYEQSGELHGLMRVRGFTQDDAHIFCTE--DQIKEEFKNQFRLIQKVYSDF 341 (563)
T ss_pred CHHHHHHHhCcCCChHHCCceeeEeccccCCCCCcCCcCcccccceEEeeeEEEcCH--HHHHHHHHHHHHHHHHHHHHc
Confidence 1111111112234678899 99999999998543 789999999999999999986 789999999999999999999
Q ss_pred CCcEEEEeccCCCcc----h-----hh-------------------------hceeeEEEeeCCCCcEEeeecccCcccc
Q psy11602 348 GIAYRVVNIVSGALN----H-----AA-------------------------AKKLDLEAWFPGSGAFRELVSCSNCLAY 393 (1083)
Q Consensus 348 ~lpyRvv~~~~~dl~----~-----~a-------------------------~~~~DiE~w~P~~~~y~Ev~S~sn~~d~ 393 (1083)
|||++.|.++++|.- . .+ .-++|+|+ ....|+..|++++- .|+
T Consensus 342 gl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~g~~y~~~~~f~~-~~~lg~~~~~~t~q--~~~ 418 (563)
T TIGR00418 342 GFSFDKYELSTRDPEDFIGEDELWEKAEAALEEALKELGVPYEIDPGRGAFYGPKIDFAF-KDALGREWQCATVQ--LDF 418 (563)
T ss_pred CCCeEEEEEeCCChhhhcCCHHHHHHHHHHHHHHHHhCCCceEEcCCCcceecceEEEEe-ecCCCCceeeceee--ecc
Confidence 999999999887541 0 00 11357774 44457777777664 344
Q ss_pred c-ccccceEEecccCCCCceeeEEeec-ccccchhHHHHHHHhhccCCCceecCccccc
Q psy11602 394 Q-SRRLLVRYGQTKKMNEKIEFVHMLN-ATACATTRVICAILETHQTETGVRIPDCLRK 450 (1083)
Q Consensus 394 q-arrl~iry~~~~~~~~~~~~~htln-~t~~a~~R~i~ailEn~q~~~Gi~iP~~L~p 450 (1083)
. +.|+++.|.+. .+....++++. |.++.+.|+|++|+|.+. ..+|..+.|
T Consensus 419 ~~g~ryd~~~~~~---~g~~~~p~ii~~Gfa~gieRli~~l~e~~~----~~~p~~~~p 470 (563)
T TIGR00418 419 ELPERFDLTYVDE---DNEEKRPVMIHRAILGSIERFIAILLEKYA----GNFPLWLAP 470 (563)
T ss_pred CCHhhcCCEEECC---CCCEEeeEEEEeeccCcHHHHHHHHHHhcc----CCCCCcCCC
Confidence 3 67888888765 34566777641 555678999999999653 345644444
No 68
>cd00768 class_II_aaRS-like_core Class II tRNA amino-acyl synthetase-like catalytic core domain. Class II amino acyl-tRNA synthetases (aaRS) share a common fold and generally attach an amino acid to the 3' OH of ribose of the appropriate tRNA. PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. These enzymes are usually homodimers. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. The substrate specificity of this reaction is further determined by additional domains. Intererestingly, this domain is also found is asparagine synthase A (AsnA), in the accessory subunit of mitochondrial polymerase gamma and in the bacterial ATP phosphoribosyltransferase regulatory subunit HisZ.
Probab=99.19 E-value=2e-10 Score=121.34 Aligned_cols=158 Identities=23% Similarity=0.308 Sum_probs=126.9
Q ss_pred CCCCCCCeeEecCChHHHHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHHH
Q psy11602 14 EKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESW 93 (1083)
Q Consensus 14 ~dr~~~~~~L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s~ 93 (1083)
.+..++..+|+||.+.++..+++... +++|+++|+++++||.|... .++.|++||.+.+.+.+..+.. ..
T Consensus 46 ~~~~~~~~~LR~s~~~~l~~~~~~n~---~~~~~~lfeig~vfr~e~~~-----~~~~~~~ef~~l~~~~~g~~~~--~~ 115 (211)
T cd00768 46 GAENEEDLYLRPTLEPGLVRLFVSHI---RKLPLRLAEIGPAFRNEGGR-----RGLRRVREFTQLEGEVFGEDGE--EA 115 (211)
T ss_pred ecCCCCEEEECCCCcHHHHHHHHhhc---ccCCEEEEEEcceeecCCCc-----cccccceeEEEcCEEEEcCCch--hH
Confidence 34566788999999999999998877 89999999999999998732 2367889999999999987762 22
Q ss_pred HHHHHHHHHHHHHHHHcCC--ceEEEEeccCCCC-cccceeEeEEEEecCCCceeEEEEcCCCchhhhhcccceeccCCC
Q psy11602 94 KMLDEMIQNSEEFYADLGI--AYRVVNIVSGALN-HAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQSRRLLVRYGQTKQ 170 (1083)
Q Consensus 94 ~~~~~~~~~y~~if~~LgL--pyrvv~~~sgdlg-~~as~~~diE~~~P~~~~~~ev~s~s~cgdyqs~rl~i~y~~~~~ 170 (1083)
..+.+++...+.+++.||+ +++.+......+. +....++||++|+|.. +..||+++..+.+.++++++++|...++
T Consensus 116 ~~~~~~~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~g~~~~i~~~~~~~-~~~eig~~g~~~~~~~~~~~l~~~~~~~ 194 (211)
T cd00768 116 SEFEELIELTEELLRALGIKLDIVFVEKTPGEFSPGGAGPGFEIEVDHPEG-RGLEIGSGGYRQDEQARAADLYFLDEAL 194 (211)
T ss_pred HHHHHHHHHHHHHHHHcCCCcceEEEecCchhhccccCCceEEEEEEccCC-CeEEEeeceeecCchhHhhhhheecccc
Confidence 4689999999999999997 5777645555554 3677899999999965 4589999999999999999999976643
Q ss_pred c-----cccccccchhh
Q psy11602 171 K-----IYATACATTRV 182 (1083)
Q Consensus 171 ~-----~n~tg~a~~Rl 182 (1083)
. +-+.+++++|+
T Consensus 195 ~~~~p~~~~~~~~~~R~ 211 (211)
T cd00768 195 EYRYPPTIGFGLGLERL 211 (211)
T ss_pred cccCceeecCccCccCC
Confidence 2 33334788875
No 69
>KOG2324|consensus
Probab=99.18 E-value=3.8e-11 Score=132.70 Aligned_cols=164 Identities=21% Similarity=0.304 Sum_probs=131.8
Q ss_pred chhhhh-hhhcccccccccccCc-CceeEEEeeeEEEEEEeCCCchhHHHHHHHHHHHHHHHHHHhCCcEEEEeccCCCc
Q psy11602 284 SWKMLD-EMIQNSEEFYADLDTR-GIFRVHQFEKVEQFVLTSPHDDESWKTLDEMIQNSEEFYADLGIAYRVVNIVSGAL 361 (1083)
Q Consensus 284 s~~~~~-~~~~~~~~~~~~~~tr-Gl~Rvhqf~kvE~f~~~~~~~~~s~~~~e~~~~~~e~~~~~L~lpyRvv~~~~~dl 361 (1083)
||+.|| ++|+.-+.||-.-.+| ||.|.+||-+=.|+.|...+ |.|.+.|+.+...+..|+++|+|||--|.-.+|++
T Consensus 130 sykqlPi~vYQigrKfRDElrpRfGLlRgREFlMKDmYsFd~~~-etA~qTy~~v~~aY~~iFkqL~~pfVkv~AdsG~i 208 (457)
T KOG2324|consen 130 SYKQLPIRVYQIGRKFRDELRPRFGLLRGREFLMKDMYSFDSDE-ETAQQTYQLVDQAYDRIFKQLGLPFVKVWADSGDI 208 (457)
T ss_pred ccccCcEEeeeechhhhhccCccccchhhHHHHHhhhhcccCCH-HHHHHHHHHHHHHHHHHHHHcCCCeEEEeeccccc
Confidence 788899 8899988888765554 99999999999999998776 79999999999999999999999999999999999
Q ss_pred chhhhceeeEE--------EeeCCC-----C----------------------cEEeeecccCcccccccccceEEeccc
Q psy11602 362 NHAAAKKLDLE--------AWFPGS-----G----------------------AFRELVSCSNCLAYQSRRLLVRYGQTK 406 (1083)
Q Consensus 362 ~~~a~~~~DiE--------~w~P~~-----~----------------------~y~Ev~S~sn~~d~qarrl~iry~~~~ 406 (1083)
|-.-+.-|-+= ..-|+- . +-.||+-.=..++..|..||.+|-+.
T Consensus 209 GG~vShEfhl~~~vgED~l~~C~~C~~s~n~e~~~~sk~~~Cp~C~~~~L~~~~~IEVgHtF~LG~kYS~~lna~f~~~- 287 (457)
T KOG2324|consen 209 GGEVSHEFHLIHPVGEDTLMSCPSCGYSKNSEDLDLSKIASCPKCNEGRLTKTKSIEVGHTFLLGTKYSKPLNAKFVNV- 287 (457)
T ss_pred CceeeeeEeccCccCccceeecCcCCccCchhhhcCCccccCCcccCCCcccccceEEEEEEEeccccccccCceeeee-
Confidence 97666555321 111110 0 12233333333557788888888765
Q ss_pred CCCCceeeEEeecccccchhHHHHHHHhhccCCCceecCccccccC
Q psy11602 407 KMNEKIEFVHMLNATACATTRVICAILETHQTETGVRIPDCLRKFV 452 (1083)
Q Consensus 407 ~~~~~~~~~htln~t~~a~~R~i~ailEn~q~~~Gi~iP~~L~py~ 452 (1083)
.+|.+++||- ++|+.|+|+|+|++|---+++|++||..|+||-
T Consensus 288 --~gKpe~l~Mg-CyGIGVtRllaAa~evls~~~~lrwP~~iAPy~ 330 (457)
T KOG2324|consen 288 --EGKPEFLHMG-CYGIGVTRLLAAAAEVLSDDKGLRWPSLIAPYK 330 (457)
T ss_pred --cCCcceEEec-ceeccHHHHHHHHHHHhccccccccccccCcce
Confidence 4678899976 999999999999999999999999999999995
No 70
>PLN02908 threonyl-tRNA synthetase
Probab=99.16 E-value=3.9e-11 Score=149.35 Aligned_cols=225 Identities=19% Similarity=0.311 Sum_probs=146.5
Q ss_pred eeEecccccccccccccCCCCccccccCcccchHHHHHHhhhhcccchhhhhhhhhccccccccccCceEeeeccceEEE
Q psy11602 195 GVRIPDCLRKFVPAVYLNEAGEIPFVKTAPIDEEETKKQKKQKEGMKKKLTMSLFSQVGSHGRDTRGIFRVHQFEKVEQF 274 (1083)
Q Consensus 195 Gi~lP~~L~p~~~~~~~~~~G~~pv~~P~~i~~d~~~~~~~k~~~~k~~~~~~~~~e~g~h~~dl~~i~Rv~qfd~~~~~ 274 (1083)
|++|-.+|..|+.+.+. ..||.+|.+|.++..+.. ...++.+.+.+ .||.+...+ +++
T Consensus 320 g~~i~~~l~~~~~~~~~-~~G~~ev~tP~l~~~~l~----------------~~sGh~~~~~~---~mf~~~~~~--~~~ 377 (686)
T PLN02908 320 GARIYNKLMDFIREQYW-ERGYDEVITPNIYNMDLW----------------ETSGHAAHYKE---NMFVFEIEK--QEF 377 (686)
T ss_pred HHHHHHHHHHHHHHHHH-HcCCEEEECCccccHHHH----------------hhcCCccccch---hccEEecCC--eeE
Confidence 34444778888877774 789999999999994444 33445555555 466652211 122
Q ss_pred Eee----------CCCCCcchhhhh-hhhccccccccccc--CcCceeEEEeeeEEEEEEeCCCchhHHHHHHHHHHHHH
Q psy11602 275 VLT----------SPHDDESWKMLD-EMIQNSEEFYADLD--TRGIFRVHQFEKVEQFVLTSPHDDESWKTLDEMIQNSE 341 (1083)
Q Consensus 275 ~~~----------~~~~~~s~~~~~-~~~~~~~~~~~~~~--trGl~Rvhqf~kvE~f~~~~~~~~~s~~~~e~~~~~~e 341 (1083)
.+- ..+...||++|| ++++...|||+... ++||+|||||+++|++.||+| +++++.++++++.++
T Consensus 378 ~Lrp~~~~~~~~~~~~~~~s~r~LPlr~~~~g~~fR~E~~~~l~Gl~RvReF~q~d~~if~~~--~q~~~e~~~~l~~~~ 455 (686)
T PLN02908 378 GLKPMNCPGHCLMFAHRVRSYRELPLRLADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCRE--DQIKDEVKGVLDFLD 455 (686)
T ss_pred EEcCCCcHHHHHHHhccccChhhCCHhHEEeeccccCCCCcCCcCccccccEEEeeEEEEcCH--HHHHHHHHHHHHHHH
Confidence 111 112345899999 99999999999655 789999999999999999999 689999999999999
Q ss_pred HHHHHhCCcEEEEeccC------CCcchhhh---------ceeeEEEee--CCCC-------------cEEeeeccc-Cc
Q psy11602 342 EFYADLGIAYRVVNIVS------GALNHAAA---------KKLDLEAWF--PGSG-------------AFRELVSCS-NC 390 (1083)
Q Consensus 342 ~~~~~L~lpyRvv~~~~------~dl~~~a~---------~~~DiE~w~--P~~~-------------~y~Ev~S~s-n~ 390 (1083)
++|+.||+||++. +.+ |+++.-.. .+.+.. |- |+.+ ...++.-|+ ..
T Consensus 456 ~v~~~lG~~~~~~-ls~r~~~~~g~~~~w~~ae~~l~~~ld~~~~~-~~~~~g~~afygpkid~~~~d~l~r~~~~~t~q 533 (686)
T PLN02908 456 YVYEVFGFTYELK-LSTRPEKYLGDLETWDKAEAALTEALNAFGKP-WQLNEGDGAFYGPKIDITVSDALKRKFQCATVQ 533 (686)
T ss_pred HHHHHCCCcEEEE-EeCCccccCCCHHHHHHHHHHHHHHHHHcCCC-cEECCCceeecccceEEEEEeccCCEeecccee
Confidence 9999999999974 333 22222110 111111 11 3332 233344444 35
Q ss_pred ccccc-cccceEEecccCC-CCceeeEEeecccccchhHHHHHHHhhccCCCceecCcccccc
Q psy11602 391 LAYQS-RRLLVRYGQTKKM-NEKIEFVHMLNATACATTRVICAILETHQTETGVRIPDCLRKF 451 (1083)
Q Consensus 391 ~d~qa-rrl~iry~~~~~~-~~~~~~~htln~t~~a~~R~i~ailEn~q~~~Gi~iP~~L~py 451 (1083)
.||+- .|+++.|-++.+. ....-.+|- +-.=.+.|+|++|+|++. | .+|..|.|.
T Consensus 534 ~df~lp~~f~L~Y~~e~~~~~~~pv~ihr--ai~GsiERli~iL~e~~~---g-~~p~wlsp~ 590 (686)
T PLN02908 534 LDFQLPIRFKLSYSAEDEAKIERPVMIHR--AILGSVERMFAILLEHYA---G-KWPFWLSPR 590 (686)
T ss_pred ecccCHhhcCCEEECCCCCcCCCCEEEEe--CceEhHHHHHHHHHHHcC---C-CCCCCCCCc
Confidence 78873 6799999875321 012234443 122278999999999652 2 566555543
No 71
>PRK12305 thrS threonyl-tRNA synthetase; Reviewed
Probab=99.14 E-value=1.8e-11 Score=150.00 Aligned_cols=218 Identities=15% Similarity=0.200 Sum_probs=141.7
Q ss_pred ccccccccccccCCCCccccccCcccchHHHHHHhhhhcccchhhhhhhhhccccccccccCceEeeecc--ceEEEEee
Q psy11602 200 DCLRKFVPAVYLNEAGEIPFVKTAPIDEEETKKQKKQKEGMKKKLTMSLFSQVGSHGRDTRGIFRVHQFE--KVEQFVLT 277 (1083)
Q Consensus 200 ~~L~p~~~~~~~~~~G~~pv~~P~~i~~d~~~~~~~k~~~~k~~~~~~~~~e~g~h~~dl~~i~Rv~qfd--~~~~~~~~ 277 (1083)
.+|..++.+.+. ..||.+|.+|.+...+..... ++.+.+.+ .||++..-+ ....-+.+
T Consensus 210 ~~l~~~~~~~~~-~~Gy~ev~tP~le~~~l~~~s----------------g~~~~~~~---~my~~~d~~~~~~~LRP~~ 269 (575)
T PRK12305 210 REIEDYLRKEHL-KRGYEFVYTPHIGKSDLWKTS----------------GHLDNYKE---NMFPPMEIDEEEYYLKPMN 269 (575)
T ss_pred HHHHHHHHHHHH-HcCCEEEECCccCCHHHHhhc----------------CCcccchh---hcccccccCCceEEEecCC
Confidence 556666666663 789999999999995555331 22222222 344442111 11111111
Q ss_pred CC-------CCCcchhhhh-hhhccccccccccc--CcCceeEEEeeeEEEEEEeCCCchhHHHHHHHHHHHHHHHHHHh
Q psy11602 278 SP-------HDDESWKMLD-EMIQNSEEFYADLD--TRGIFRVHQFEKVEQFVLTSPHDDESWKTLDEMIQNSEEFYADL 347 (1083)
Q Consensus 278 ~~-------~~~~s~~~~~-~~~~~~~~~~~~~~--trGl~Rvhqf~kvE~f~~~~~~~~~s~~~~e~~~~~~e~~~~~L 347 (1083)
-| +...||++|| ++++...|||+.+. ++||+|+|||+++++..++.+ +++.+.+.+++..+.++|+.|
T Consensus 270 ~~~~~~~~~~~~~s~~~lP~r~~~~g~~fR~E~~~~~~Gl~R~reF~q~~~~if~~~--~~~~~e~~e~i~l~~~~~~~l 347 (575)
T PRK12305 270 CPGHILIYKSRLRSYRDLPLRLAEFGTVYRYEKSGVLHGLTRVRGFTQDDAHIFCTP--DQIEDEILKVLDFVLELLKDF 347 (575)
T ss_pred CHHHHHHHhcccCChhhCCHhhEEecccccCCCCCCCcCcccccCeEEcceEEEeCH--HHHHHHHHHHHHHHHHHHHHc
Confidence 11 1123678899 99999999999655 589999999999999999987 678888999999999999999
Q ss_pred CCcEEEEeccCCCcchhhhcee--eEEEeeCCCCcEEeeecccC----------------------------------cc
Q psy11602 348 GIAYRVVNIVSGALNHAAAKKL--DLEAWFPGSGAFRELVSCSN----------------------------------CL 391 (1083)
Q Consensus 348 ~lpyRvv~~~~~dl~~~a~~~~--DiE~w~P~~~~y~Ev~S~sn----------------------------------~~ 391 (1083)
|||...+.+.+.++ .+| |.|+|.++.+.++++.+.++ ..
T Consensus 348 gl~~~~i~l~~r~~-----~~~~g~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~y~~~~~~~~~d~~g~~~~~~t~~~ 422 (575)
T PRK12305 348 GFKDYYLELSTREP-----EKYVGDDEVWEKATEALREALEELGLEYVEDPGGAAFYGPKIDVQIKDALGREWQMSTIQL 422 (575)
T ss_pred CCCeEEEEEeCCCh-----hhccCCHHHHHHHHHHHHHHHHhcCCCcEecCCCcccccccEEEEeeccCCCceeccceee
Confidence 99977788888774 333 55566544333332222111 13
Q ss_pred ccc-ccccceEEecccCCCCceeeEEeeccc-ccchhHHHHHHHhhccCCCceecCcccccc
Q psy11602 392 AYQ-SRRLLVRYGQTKKMNEKIEFVHMLNAT-ACATTRVICAILETHQTETGVRIPDCLRKF 451 (1083)
Q Consensus 392 d~q-arrl~iry~~~~~~~~~~~~~htln~t-~~a~~R~i~ailEn~q~~~Gi~iP~~L~py 451 (1083)
||+ +.|++++|.+. ++....++++-+. +-.+.|+|++|+|+|.. .+|..++|+
T Consensus 423 ~~~~~~~fdl~y~~~---~~~~~~p~~ih~~~~G~~eRl~~~l~e~~~~----~~p~~~~p~ 477 (575)
T PRK12305 423 DFNLPERFDLEYTAE---DGKRQRPVMIHRALFGSIERFIGILTEHYAG----AFPFWLAPV 477 (575)
T ss_pred ecccHhhCCCEEECC---CCCccCceEEEccccccHHHHHHHHHHHhCC----CCCCCCCCc
Confidence 443 36788888764 2333444443222 22689999999997642 677767775
No 72
>COG0442 ProS Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.08 E-value=7e-11 Score=139.83 Aligned_cols=162 Identities=16% Similarity=0.284 Sum_probs=141.3
Q ss_pred cchhhhh-hhhccccccccc-ccCcCceeEEEeeeEEEEEEeCCCchhHHHHHHHHHHHHHHHHHHhCCcEEEEeccCCC
Q psy11602 283 ESWKMLD-EMIQNSEEFYAD-LDTRGIFRVHQFEKVEQFVLTSPHDDESWKTLDEMIQNSEEFYADLGIAYRVVNIVSGA 360 (1083)
Q Consensus 283 ~s~~~~~-~~~~~~~~~~~~-~~trGl~Rvhqf~kvE~f~~~~~~~~~s~~~~e~~~~~~e~~~~~L~lpyRvv~~~~~d 360 (1083)
.||++|| .+|+....||.. +.++||+|.++|. ....+..|.+.+++++.+++|+..+.+|+ |.||+.+..+++++
T Consensus 123 ~SYkdLPl~lYQi~~kfRdE~rpr~gllR~REF~-mkdaySfh~~~e~a~~~y~~~~~~Y~~if--~~i~l~~~~~~ad~ 199 (500)
T COG0442 123 RSYKDLPLKLYQIQSKFRDEKRPRFGLLRGREFL-MKDAYSFHADEEDAEETYEKMLDAYSRIF--LRLPLIFGPVPADE 199 (500)
T ss_pred hhhhhCCcceeeeeeEEeccccCCCCccchheee-ecccccccCCHHHHHHHHHHHHHHHHHHH--HhCCceEEeecccC
Confidence 3899999 999999999995 5599999999999 67777777777999999999999999999 77777777888889
Q ss_pred cchhhhceeeEEEeeCCCCcEEeeecccCccccccccc-ceEEecccCCCCceeeEEeecccccchhHHHHHHHhhccCC
Q psy11602 361 LNHAAAKKLDLEAWFPGSGAFRELVSCSNCLAYQSRRL-LVRYGQTKKMNEKIEFVHMLNATACATTRVICAILETHQTE 439 (1083)
Q Consensus 361 l~~~a~~~~DiE~w~P~~~~y~Ev~S~sn~~d~qarrl-~iry~~~~~~~~~~~~~htln~t~~a~~R~i~ailEn~q~~ 439 (1083)
-..++..++-++|.|| +++=.+|+.|.++++..++.. .+.|++.. .+...||||. |.....|.+.+++-.|.++
T Consensus 200 g~~Gg~~S~eF~~l~p-d~ge~qi~ts~~y~aN~e~a~~~~~~~~~~--~~~~~~v~t~--s~~~s~r~~~~~i~i~GDn 274 (500)
T COG0442 200 GFIGGSYSHEFEALMP-DGGEDQIATSHHYGANFEKAFIDIKFEDEE--EGELEYVHTT--SYGISTRIIGAAILIHGDN 274 (500)
T ss_pred CCCCCccceEEEEEcc-CCCccEEEEecchHHhHHHhccCCCccccc--cccceEeccc--ceEEEeeeeeEEEEEecCC
Confidence 8999999999999999 666689999999999999999 88888653 2568899998 4455589999999999999
Q ss_pred CceecCccccccC
Q psy11602 440 TGVRIPDCLRKFV 452 (1083)
Q Consensus 440 ~Gi~iP~~L~py~ 452 (1083)
+|.++|+.++|.-
T Consensus 275 ~G~v~Pp~vA~~q 287 (500)
T COG0442 275 EGLVLPPIVADIQ 287 (500)
T ss_pred CCccCCchhccce
Confidence 9999998888763
No 73
>KOG1512|consensus
Probab=99.06 E-value=5.5e-11 Score=127.11 Aligned_cols=98 Identities=22% Similarity=0.430 Sum_probs=88.0
Q ss_pred eeccccCCCCCCCCc----eeeccCCCCcccccchhhhHHHHHHhhhhcccceecccccCCCCCccccccCCCCCCCCCc
Q psy11602 632 VCCVCLGERSDDVNE----IVECDSCGVTVHEVKIQQEFLAIKFLIRYLLFWFQLEDFSKFSKILVCCVCLGERSDDVNE 707 (1083)
Q Consensus 632 ~c~~c~g~~~~~~~~----l~~C~~Cg~~~h~~~~~~~~~~i~~~~~~~~~W~~~~d~~~~~~~~~C~VC~~~~~~~~n~ 707 (1083)
.|.+|+.....++++ ++.|..|-.+.|+.|+....-++....+| .|.|.+|. .|.||+++.. .++
T Consensus 260 ~~~~~~~~~~~~~~~r~~S~I~C~~C~~~~HP~Ci~M~~elv~~~KTY--~W~C~~C~-------lC~IC~~P~~--E~E 328 (381)
T KOG1512|consen 260 ERKHFWDIQTNIIQSRRNSWIVCKPCATRPHPYCVAMIPELVGQYKTY--FWKCSSCE-------LCRICLGPVI--ESE 328 (381)
T ss_pred hhhhhhcchhhhhhhhhccceeecccccCCCCcchhcCHHHHhHHhhc--chhhcccH-------hhhccCCccc--chh
Confidence 599999888777766 99999999999999999999999999999 99999988 9999997754 689
Q ss_pred EEEcccCCcccccccccccccCCCcccCCCCCCCCcccc--cccC
Q psy11602 708 IVECDSCGVTVHEGCYGVQDTASISSTVSSCSTEPWFCE--SCRA 750 (1083)
Q Consensus 708 iv~Cd~C~i~VH~~CYGv~~~~~~~~~~~~~~~~~W~Cd--~C~~ 750 (1083)
++|||.|+.++|..|.|.... |.|.|.|| .|..
T Consensus 329 ~~FCD~CDRG~HT~CVGL~~l----------P~G~WICD~~C~~~ 363 (381)
T KOG1512|consen 329 HLFCDVCDRGPHTLCVGLQDL----------PRGEWICDMRCREA 363 (381)
T ss_pred eeccccccCCCCccccccccc----------cCccchhhhHHHHh
Confidence 999999999999999999887 78999999 4443
No 74
>KOG0957|consensus
Probab=98.96 E-value=6.6e-11 Score=134.21 Aligned_cols=71 Identities=46% Similarity=0.823 Sum_probs=62.3
Q ss_pred cccccccccCCCCCcceeecccccccccccCCCccceeeecccccccccccccccccccCCCCCCccccccccccccccc
Q psy11602 547 ICAVHRDSWLPEASLPIRYLGVSTCFRQECDAGMCRTYFHVTCAQREGLLSEATSEEVDQADPFYAHCRLHADKLEDFSK 626 (1083)
Q Consensus 547 ~c~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~c~~~~H~~ca~~~g~~~e~~~~~~~~~~p~~~~c~~h~~k~~~~~~ 626 (1083)
.|..|.+.-..|.|+.| +||||||+.|||+||||.+|||+|++.+ .++|||||++|+.|.++-...+-
T Consensus 240 ~Cs~Ced~~fARtGvci-----------~CdaGMCk~YfHVTCAQk~GlLvea~~e-~DiAdpfya~CK~Ht~r~~~K~~ 307 (707)
T KOG0957|consen 240 TCSACEDKIFARTGVCI-----------RCDAGMCKEYFHVTCAQKLGLLVEATDE-NDIADPFYAFCKKHTNRDNLKPY 307 (707)
T ss_pred hhccccchhhhhcceee-----------eccchhhhhhhhhhHHhhhcceeecccc-ccchhhHHHHHHhhcchhhhhhh
Confidence 59999999999999988 9999999999999999999999999997 48999999999999876544433
Q ss_pred CCC
Q psy11602 627 FSK 629 (1083)
Q Consensus 627 ~~~ 629 (1083)
..|
T Consensus 308 rrn 310 (707)
T KOG0957|consen 308 RRN 310 (707)
T ss_pred hhh
Confidence 333
No 75
>PRK07080 hypothetical protein; Validated
Probab=98.94 E-value=2.4e-09 Score=119.12 Aligned_cols=186 Identities=17% Similarity=0.199 Sum_probs=146.3
Q ss_pred CCCCCCCCCCCCeeEecCChHHHHHHHhcc-cCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCC
Q psy11602 9 GDSAPEKDELDDKYLIATSEQPICAVHRDS-WLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSP 87 (1083)
Q Consensus 9 ~~~~~~dr~~~~~~L~pTsE~~i~~l~~~~-i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~ 87 (1083)
|+.-.++....+++|.|..-.+++.++... .++..- ..+--.++|||+|. + +++-|+.+|.|.|...+-.+
T Consensus 116 ~~~~~~~l~~~~~vL~pAaCyP~Yp~l~~~g~lp~~g--~~~dv~g~CFR~E~-s-----~dl~Rl~~F~mrE~V~iGt~ 187 (317)
T PRK07080 116 GEDWTESQKPTDVVLTPAACYPVYPVLARRGALPADG--RLVDVASYCFRHEP-S-----LDPARMQLFRMREYVRIGTP 187 (317)
T ss_pred cCchhhhcCCCcceecccccccchhhhccCcccCCCC--cEEEeeeeeeccCC-C-----CCcHHHhheeeeEEEEecCH
Confidence 344467778889999999999999999876 455333 77888999999999 2 36999999999999888877
Q ss_pred CchHHHHHHHHHHHHHHHHHHHcCCceEEEEeccCCCCccc--------ceeEeEEEEec--CCCceeEEEEcCCCchhh
Q psy11602 88 HDDESWKMLDEMIQNSEEFYADLGIAYRVVNIVSGALNHAA--------AKKLDLEAWFP--GSGAFRELVSCSNCLDYQ 157 (1083)
Q Consensus 88 ~~e~s~~~~~~~~~~y~~if~~LgLpyrvv~~~sgdlg~~a--------s~~~diE~~~P--~~~~~~ev~s~s~cgdyq 157 (1083)
+ .+.+..+..++....+.+.|||+|.+.-+..-=-|.+. .-.+-+|.++| +.+....|.|+...+|+|
T Consensus 188 e--~v~~~r~~w~e~~~~l~~~LgL~~~ve~AnDPFF~~~gk~~a~~Qr~~~lKfEl~vpi~~~~~~tA~~S~NyH~dhF 265 (317)
T PRK07080 188 E--QIVAFRQSWIERGTAMADALGLPVEIDLANDPFFGRGGKIVAASQREQNLKFELLIPIYSDAPPTACMSFNYHMDHF 265 (317)
T ss_pred H--HHHHHHHHHHHHHHHHHHHhCCceeEeecCCccccccchhhhhhhhhccceeEEEEecCCCCCceEEEEEehhhhcc
Confidence 6 48888889999999999999999998777532222211 12345688887 556778999999999999
Q ss_pred hhcccceeccCCCc-cccccccchhheeheeccccCCCeeEeccccccc
Q psy11602 158 SRRLLVRYGQTKQK-IYATACATTRVICAILETHQTETGVRIPDCLRKF 205 (1083)
Q Consensus 158 s~rl~i~y~~~~~~-~n~tg~a~~Rli~Alle~~~~~~Gi~lP~~L~p~ 205 (1083)
+++++|+..+.... -.|.|.+++|++.|+|.+|+-+ -..||..++.-
T Consensus 266 g~~f~I~~~~g~~ahTgCvGFGlER~a~All~~hG~d-~~~WP~~Vr~~ 313 (317)
T PRK07080 266 GLTWGIRTADGAVAHTGCVGFGLERLALALFRHHGLD-PAAWPAAVRDV 313 (317)
T ss_pred ccccCcccCCCCEeEEeeeecCHHHHHHHHHHHhCCC-hhhccHHHHHH
Confidence 99999986655433 7788999999999999998864 35688766543
No 76
>PLN02734 glycyl-tRNA synthetase
Probab=98.92 E-value=2e-09 Score=131.06 Aligned_cols=132 Identities=23% Similarity=0.317 Sum_probs=102.1
Q ss_pred CeeEecCChHH-HHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCch--------
Q psy11602 20 DKYLIATSEQP-ICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDD-------- 90 (1083)
Q Consensus 20 ~~~L~pTsE~~-i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e-------- 90 (1083)
.-||+|=-=+. +.++-+-.-..-..||+-.+||+..||+|+ .|+.||+|+|||+|.|+=+|..|+..
T Consensus 248 ~~YLRPETAQGiFvnFk~l~~~~~~klPF~~AQIGk~FRNEI----sPR~gl~R~REF~qaEiE~Fv~P~~k~h~~f~~v 323 (684)
T PLN02734 248 VGYMRPETAQGIFVNFRDLYYYNGGKLPFAAAQIGQAFRNEI----SPRQGLLRVREFTLAEIEHFVDPEDKSHPKFSEV 323 (684)
T ss_pred cceecccccchheeeHHHHHHhcCCCCCeeeeeccHhhhccc----CcccceeeechhhhhhhheecCcccccccchhhh
Confidence 56888843333 344433344566799999999999999999 56679999999999999999999831
Q ss_pred -------------------------HH-------HHHHHHHHHHHHHHHHHcCCc---eEEEEeccCCCCcccceeEeEE
Q psy11602 91 -------------------------ES-------WKMLDEMIQNSEEFYADLGIA---YRVVNIVSGALNHAAAKKLDLE 135 (1083)
Q Consensus 91 -------------------------~s-------~~~~~~~~~~y~~if~~LgLp---yrvv~~~sgdlg~~as~~~diE 135 (1083)
+| .+++.-.+.-...|+.+|||+ .|.-+-.+.+|-.-|.-++|+|
T Consensus 324 ~~~~l~l~~~~~q~~~~~~~~~t~~eAv~~gii~ne~l~Y~~~r~~~fl~~iGi~~~~lRfRqh~~~EmAHYA~dcwD~E 403 (684)
T PLN02734 324 ADLEFLLFPREEQLGGQKAKPMRLGEAVSKGIVNNETLGYFIGRTYLFLTKLGIDKERLRFRQHLANEMAHYAADCWDAE 403 (684)
T ss_pred hhhhhhcccHhhhhccCCcccccHHHHHHcCccchHHHHHHHHHHHHHHHHcCCCHHHeeecccCcHHHhhhhhccEeEE
Confidence 11 336666677777889999996 4555666778999999999999
Q ss_pred EEecCCCceeEEEEcCCCchhh
Q psy11602 136 AWFPGSGAFRELVSCSNCLDYQ 157 (1083)
Q Consensus 136 ~~~P~~~~~~ev~s~s~cgdyq 157 (1083)
+.+|- +|+|+.-|.+=+||=
T Consensus 404 ~~~~~--GWiE~vG~AdRs~yD 423 (684)
T PLN02734 404 IECSY--GWIECVGIADRSAYD 423 (684)
T ss_pred EecCC--CcEEEEEeccccccc
Confidence 99964 799999888777664
No 77
>TIGR00389 glyS_dimeric glycyl-tRNA synthetase, dimeric type. This model describes a glycyl-tRNA synthetase distinct from the two alpha and two beta chains of the tetrameric E. coli glycyl-tRNA synthetase. This enzyme is a homodimeric class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes His, Ser, Pro, and this set of glycyl-tRNA synthetases.
Probab=98.89 E-value=2.2e-09 Score=128.79 Aligned_cols=132 Identities=25% Similarity=0.375 Sum_probs=100.8
Q ss_pred CCeeEecCChHHHHHHHhc-ccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHHHHHHH
Q psy11602 19 DDKYLIATSEQPICAVHRD-SWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESWKMLD 97 (1083)
Q Consensus 19 ~~~~L~pTsE~~i~~l~~~-~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s~~~~~ 97 (1083)
...||+|--=+.|---|.+ .-.+-..||+-++||+..||+|+ .|+.||+|+|||++.|+=.|+.|+ +.....|.
T Consensus 155 ~~~yLRPETAQGiFvnFk~l~~~~~~klPfgiaQiGk~fRNEI----sPr~~l~R~REF~q~EiE~F~~p~-~~~~~~f~ 229 (551)
T TIGR00389 155 RKGYLRPETAQGIFINFKRLLQFFRRKLPFGVAQIGKSFRNEI----SPRNGLFRVREFEQAEIEFFVHPL-DKSHPKFE 229 (551)
T ss_pred cccccccccchhhHHhHHHHHHhcCCCCCeeehhhhHhhhccc----CcccceEEeehhhhchhheecCcc-cccchhhH
Confidence 3678898544554444444 34567799999999999999999 566799999999999999999996 22333333
Q ss_pred HHH----------------------------------HHHHHHHHHcCCc---eEEEEeccCCCCcccceeEeEEEEecC
Q psy11602 98 EMI----------------------------------QNSEEFYADLGIA---YRVVNIVSGALNHAAAKKLDLEAWFPG 140 (1083)
Q Consensus 98 ~~~----------------------------------~~y~~if~~LgLp---yrvv~~~sgdlg~~as~~~diE~~~P~ 140 (1083)
.+. .....|+.+|||+ .|.-+-.+.+|-.-|..++|+|+.+|-
T Consensus 230 ~~~~~~~~l~~~~~~~~~~~eav~~g~i~n~~~~y~~~~~~~fl~~~Gi~~~~lrfrqh~~~e~AHYa~~~~D~e~~~~~ 309 (551)
T TIGR00389 230 EVKQDILPLLPRQMQESGIGEAVESGMIENETLGYFIARVKQFLLEIGINPDKLRFRQHDKNEMAHYAKDCWDFEFLTPY 309 (551)
T ss_pred HHHHHHHhhccchhhhccHHHHHHhcccchHHHHHHHHHHHHHHHHhCCCHHHeeecccCcHHHhhhccccEeEEEecCC
Confidence 332 3336789999995 455566777899999999999999974
Q ss_pred CCceeEEEEcCCCchhh
Q psy11602 141 SGAFRELVSCSNCLDYQ 157 (1083)
Q Consensus 141 ~~~~~ev~s~s~cgdyq 157 (1083)
+|.|+.-|.+=+||-
T Consensus 310 --Gw~E~~G~a~R~~yD 324 (551)
T TIGR00389 310 --GWIECVGIADRGDYD 324 (551)
T ss_pred --CcEEEEEeccccccC
Confidence 799999888877774
No 78
>PRK14894 glycyl-tRNA synthetase; Provisional
Probab=98.85 E-value=1.3e-08 Score=119.19 Aligned_cols=132 Identities=21% Similarity=0.336 Sum_probs=110.7
Q ss_pred CCeeEecCChHHHHHHHhc-ccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHHHHHHH
Q psy11602 19 DDKYLIATSEQPICAVHRD-SWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESWKMLD 97 (1083)
Q Consensus 19 ~~~~L~pTsE~~i~~l~~~-~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s~~~~~ 97 (1083)
...||+|--=+.|---|.+ .-.+-+.||+-++||+..||+|+ .|+.||+|+|||++.|+=.|+.|.. +.+++.
T Consensus 137 ~~~yLRPETAQGiFvnFk~ll~~~~~klPFgiaQIGk~FRNEI----sPr~~l~R~REF~q~EiE~Fv~P~~--~~~~~~ 210 (539)
T PRK14894 137 SFAYLRPETAQGIFVNFANVLATSARKLPFGIAQVGKAFRNEI----NPRNFLFRVREFEQMEIEYFVMPGT--DEEWHQ 210 (539)
T ss_pred cceeeCcccchHHHHHHHHHHHhcCCCCCeeEEeeeccccCcc----CCCCceeecccchhheEEEEeCCCc--hHHHHH
Confidence 4579999555555444444 34577799999999999999999 5666999999999999999999985 778888
Q ss_pred HHHHHHHHHHHHcCCc---eEEEEeccCCCCcccceeEeEEEEecCCCceeEEEEcCCCchhh
Q psy11602 98 EMIQNSEEFYADLGIA---YRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQ 157 (1083)
Q Consensus 98 ~~~~~y~~if~~LgLp---yrvv~~~sgdlg~~as~~~diE~~~P~~~~~~ev~s~s~cgdyq 157 (1083)
-.++.-..|+.+|||+ +|.-+-...+|..-|..++|+|+.+|+ -+|.|+.-|.+=+||-
T Consensus 211 y~~~~~~~fl~~iGi~~~~lrfr~h~~~ElAHYa~~~~D~e~~~p~-~Gw~E~~Gia~RtdyD 272 (539)
T PRK14894 211 RWLEARLAWWEQIGIPRSRITIYDVPPDELAHYSKRTFDLMYDYPN-IGVQEIEGIANRTDYD 272 (539)
T ss_pred HHHHHHHHHHHHhCCCHHHeeeeecCcHHhhhhhhccEEEEEECCC-CCeEEEEEeecccccC
Confidence 8888888999999997 677777888999999999999999983 3699999998888874
No 79
>KOG1244|consensus
Probab=98.81 E-value=1.6e-09 Score=115.61 Aligned_cols=49 Identities=27% Similarity=0.641 Sum_probs=46.5
Q ss_pred ccccccccccccccCCCCCCcceecCccCCCccccCCCCCCCCCCCCCc
Q psy11602 1031 QAWGVLSHKCGLCHLSHDPHTMAKCDTCHLYYHLACLDPPLLRMPKKTK 1079 (1083)
Q Consensus 1031 ~~~~~~~~~c~~C~~~~~~~~~~~Cd~C~~~yH~~Cl~Ppl~~~P~~~~ 1079 (1083)
.|++.+|..|.+||.+.|+++||.||.||.+|||+||+|||..-|.|+|
T Consensus 275 rwqcieck~csicgtsenddqllfcddcdrgyhmyclsppm~eppegsw 323 (336)
T KOG1244|consen 275 RWQCIECKYCSICGTSENDDQLLFCDDCDRGYHMYCLSPPMVEPPEGSW 323 (336)
T ss_pred eeeeeecceeccccCcCCCceeEeecccCCceeeEecCCCcCCCCCCch
Confidence 4667999999999999999999999999999999999999999999994
No 80
>COG0423 GRS1 Glycyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=98.79 E-value=7.5e-09 Score=120.71 Aligned_cols=134 Identities=25% Similarity=0.412 Sum_probs=104.9
Q ss_pred CCeeEecC-ChHHHHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCc--------
Q psy11602 19 DDKYLIAT-SEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHD-------- 89 (1083)
Q Consensus 19 ~~~~L~pT-sE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~-------- 89 (1083)
...||+|- +--.+.++=+-.-..-+.||+-++||+..||+|+ .|+.||+|+|||++.|+=.|..|..
T Consensus 159 ~~~YLRPETAQGiFvnFk~l~~~~r~klPFgiaQIGKsfRNEI----SPr~gl~R~REF~QaEiE~Fv~P~~k~~p~f~~ 234 (558)
T COG0423 159 SLGYLRPETAQGIFVNFKNLLEFARNKLPFGIAQIGKSFRNEI----SPRNGLFRTREFEQAEIEFFVDPEEKEHPKFNE 234 (558)
T ss_pred cceeecccccchhhhhhHHHHHHhccCCCeEEEeechhhcccc----CcccceeehhhhhhhheeeEECCCcccCcchhh
Confidence 46799994 4434444433334567799999999999999999 6667999999999999999999984
Q ss_pred -----------hHHHH----------H-----HHHHHHHHHHHHHHcCCc---eEEEEeccCCCCcccceeEeEEEEecC
Q psy11602 90 -----------DESWK----------M-----LDEMIQNSEEFYADLGIA---YRVVNIVSGALNHAAAKKLDLEAWFPG 140 (1083)
Q Consensus 90 -----------e~s~~----------~-----~~~~~~~y~~if~~LgLp---yrvv~~~sgdlg~~as~~~diE~~~P~ 140 (1083)
+..++ + +.-.+.....|+..|||+ .|.-+-...+|.--|..++|+|+.+|
T Consensus 235 v~~~~l~l~~~~~q~~~~~~EAv~~g~~~n~~~~y~~~~~~~fl~~lGI~~e~lRfrqh~~~E~AHYa~~twD~E~~~~- 313 (558)
T COG0423 235 VKDEKLPLLPREAQEEGTEEEAVEEGIVENETLAYFIARTKFFLEDLGIDPEKLRFRQHLPEELAHYSKDTWDAEYKFP- 313 (558)
T ss_pred hhhhhcccccHHHhhhhhhhhhhhcceeechhHHHHHHHHHHHHHHcCCCHHHhhhhhcChHHHhhhhhcceeEEEecC-
Confidence 21111 1 223445566788899998 67777889999999999999999998
Q ss_pred CCceeEEEEcCCCchhh
Q psy11602 141 SGAFRELVSCSNCLDYQ 157 (1083)
Q Consensus 141 ~~~~~ev~s~s~cgdyq 157 (1083)
.++|+|+.-+.+=+||-
T Consensus 314 ~~gWiE~~GiAdRtdYD 330 (558)
T COG0423 314 FGGWIELVGIADRTDYD 330 (558)
T ss_pred CCceEEEEEeecccccc
Confidence 45599999999988885
No 81
>PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A.
Probab=98.78 E-value=1.2e-09 Score=84.39 Aligned_cols=36 Identities=39% Similarity=1.151 Sum_probs=20.8
Q ss_pred CCcEEEcccCCcccccccccccccCCCcccCCCCCCCCccccccc
Q psy11602 705 VNEIVECDSCGVTVHEGCYGVQDTASISSTVSSCSTEPWFCESCR 749 (1083)
Q Consensus 705 ~n~iv~Cd~C~i~VH~~CYGv~~~~~~~~~~~~~~~~~W~Cd~C~ 749 (1083)
.|+||+|++|++.||++|||+..++. ...|+|++|+
T Consensus 1 ~n~ll~C~~C~v~VH~~CYGv~~~~~---------~~~W~C~~C~ 36 (36)
T PF13831_consen 1 TNPLLFCDNCNVAVHQSCYGVSEVPD---------GDDWLCDRCE 36 (36)
T ss_dssp -CEEEE-SSS--EEEHHHHT-SS--S---------S-----HHH-
T ss_pred CCceEEeCCCCCcCChhhCCcccCCC---------CCcEECCcCC
Confidence 37999999999999999999988742 3369999995
No 82
>COG0441 ThrS Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=98.73 E-value=1.3e-08 Score=123.04 Aligned_cols=237 Identities=19% Similarity=0.241 Sum_probs=154.1
Q ss_pred CCCeeEecCChHHHHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHHHHHHH
Q psy11602 18 LDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESWKMLD 97 (1083)
Q Consensus 18 ~~~~~L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s~~~~~ 97 (1083)
+++++|.|..--.-.-+|.+...|||+||+|++..+.+||.|.. -.-.||.|+|.|++-|+..|+.++ +..+.+.
T Consensus 273 ~~~~~lKpmNCpgh~~ifk~~~~SYR~LP~r~~E~g~v~R~E~S---Gal~GL~RvR~ftqdDaHifc~~d--Qi~~E~~ 347 (589)
T COG0441 273 DREYALKPMNCPGHILIFKSGLRSYRELPLRLAEFGYVYRYEKS---GALHGLMRVRGFTQDDAHIFCTPD--QIKDEFK 347 (589)
T ss_pred ChhheeeeccCHhHHHHHhcCCcceeccchhhhhcceeecccCc---chhhccccccceeecccceeccHH--HHHHHHH
Confidence 47899999999999999999999999999999999999999994 356799999999999999999954 5888888
Q ss_pred HHHHHHHHHHHHcCCceEEEEeccCC--CC--------ccc----ceeEeEEEEec-CCCce----------eEEEEcCC
Q psy11602 98 EMIQNSEEFYADLGIAYRVVNIVSGA--LN--------HAA----AKKLDLEAWFP-GSGAF----------RELVSCSN 152 (1083)
Q Consensus 98 ~~~~~y~~if~~LgLpyrvv~~~sgd--lg--------~~a----s~~~diE~~~P-~~~~~----------~ev~s~s~ 152 (1083)
..++....+++.+|+....+...+.+ +| -++ ...+.++.+-. +.+.| +.++.-..
T Consensus 348 ~~~~~i~~v~~~fg~~~y~~~ls~r~k~ig~d~~W~~a~~~l~~al~~~~~~~~~~~G~~aFyGPKid~~v~Dalgr~~q 427 (589)
T COG0441 348 GILELILEVYKDFGFTDYEVKLSTRPKFIGSDEMWDKAEAALREALKEIGVEYVEEPGEGAFYGPKIDFQVKDALGREWQ 427 (589)
T ss_pred HHHHHHHHHHHhcCCceEEEEEecCCcccCChhhhHHHHHHHHHHHHhhCceeeecCCceEEECcccceEEEeccCccee
Confidence 88888888999999984444444443 11 111 12223333222 22111 11222222
Q ss_pred Cc----hhh-hhcccceeccCCCc------c-ccccccchhheeheeccccCCCeeEecccccccccccccCCCCccccc
Q psy11602 153 CL----DYQ-SRRLLVRYGQTKQK------I-YATACATTRVICAILETHQTETGVRIPDCLRKFVPAVYLNEAGEIPFV 220 (1083)
Q Consensus 153 cg----dyq-s~rl~i~y~~~~~~------~-n~tg~a~~Rli~Alle~~~~~~Gi~lP~~L~p~~~~~~~~~~G~~pv~ 220 (1083)
|+ ||. .+||++.|.+.++. + -+...++.|.|++|||++.. .+|..|+|.+ + ++
T Consensus 428 ~~TIQlDf~lpeRF~l~Yv~~d~~~~~PvmiHrai~GSiERfi~iLiE~~~G----~~P~WLaPvQ-----v------~V 492 (589)
T COG0441 428 LGTIQLDFNLPERFDLEYVDEDGEKKRPVIIHRAILGSIERFIGILLEHYAG----ALPTWLAPVQ-----V------RV 492 (589)
T ss_pred cceEEEecCChhhceEEEEcCCCCccCCEEEEeccchhHHHHHHHHHHhccC----CCcccCCccE-----E------EE
Confidence 32 232 67999999986553 3 34455679999999996443 8999999998 3 34
Q ss_pred cCcccchHHHHHHhhhhcccchhhhhhhhhccccccccccCceEeeeccceEEEEeeCC
Q psy11602 221 KTAPIDEEETKKQKKQKEGMKKKLTMSLFSQVGSHGRDTRGIFRVHQFEKVEQFVLTSP 279 (1083)
Q Consensus 221 ~P~~i~~d~~~~~~~k~~~~k~~~~~~~~~e~g~h~~dl~~i~Rv~qfd~~~~~~~~~~ 279 (1083)
+||..+....+.+-.+.++..++ +...+.-.+.+---+|.++.+++.-+.++.-
T Consensus 493 --ipV~~~~~~ya~~v~~~L~~~gi---RvdvD~~~e~l~kKIR~a~~~kipyiiVvG~ 546 (589)
T COG0441 493 --IPVADEHLDYAKEVAEKLRKAGI---RVDIDDRNEKLGKKIREAGTQKIPYVIVVGD 546 (589)
T ss_pred --EEeChHHHHHHHHHHHHHHHcCC---eeeecccccchHHHHHHHHhcCCCEEEEEch
Confidence 45554333222210011111111 1222222221111178888888888888866
No 83
>cd00768 class_II_aaRS-like_core Class II tRNA amino-acyl synthetase-like catalytic core domain. Class II amino acyl-tRNA synthetases (aaRS) share a common fold and generally attach an amino acid to the 3' OH of ribose of the appropriate tRNA. PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. These enzymes are usually homodimers. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. The substrate specificity of this reaction is further determined by additional domains. Intererestingly, this domain is also found is asparagine synthase A (AsnA), in the accessory subunit of mitochondrial polymerase gamma and in the bacterial ATP phosphoribosyltransferase regulatory subunit HisZ.
Probab=98.72 E-value=2.5e-08 Score=105.36 Aligned_cols=132 Identities=20% Similarity=0.250 Sum_probs=107.6
Q ss_pred hhhcccccccccccCcCceeEEEeeeEEEEEEeCCCchhHHHHHHHHHHHHHHHHHHhCC--cEEEEeccCCCcc-hhhh
Q psy11602 290 EMIQNSEEFYADLDTRGIFRVHQFEKVEQFVLTSPHDDESWKTLDEMIQNSEEFYADLGI--AYRVVNIVSGALN-HAAA 366 (1083)
Q Consensus 290 ~~~~~~~~~~~~~~trGl~Rvhqf~kvE~f~~~~~~~~~s~~~~e~~~~~~e~~~~~L~l--pyRvv~~~~~dl~-~~a~ 366 (1083)
+++....+||....+.++.|+++|.+++...+..+.. ....|.+++..++++++.||+ +++++.....+.. +...
T Consensus 77 ~lfeig~vfr~e~~~~~~~~~~ef~~l~~~~~g~~~~--~~~~~~~~~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~g 154 (211)
T cd00768 77 RLAEIGPAFRNEGGRRGLRRVREFTQLEGEVFGEDGE--EASEFEELIELTEELLRALGIKLDIVFVEKTPGEFSPGGAG 154 (211)
T ss_pred EEEEEcceeecCCCccccccceeEEEcCEEEEcCCch--hHHHHHHHHHHHHHHHHHcCCCcceEEEecCchhhccccCC
Confidence 5666677888766566678899999999999887742 234599999999999999997 6887645555544 3788
Q ss_pred ceeeEEEeeCCCCcEEeeecccCcccccccccceEEecccCCCCceeeEEeecccccchhHH
Q psy11602 367 KKLDLEAWFPGSGAFRELVSCSNCLAYQSRRLLVRYGQTKKMNEKIEFVHMLNATACATTRV 428 (1083)
Q Consensus 367 ~~~DiE~w~P~~~~y~Ev~S~sn~~d~qarrl~iry~~~~~~~~~~~~~htln~t~~a~~R~ 428 (1083)
+++||++|+|. +++.||++++.+.+.++++++|+|.++ +++..++|++|++ ++++|+
T Consensus 155 ~~~~i~~~~~~-~~~~eig~~g~~~~~~~~~~~l~~~~~---~~~~~~p~~~~~~-~~~~R~ 211 (211)
T cd00768 155 PGFEIEVDHPE-GRGLEIGSGGYRQDEQARAADLYFLDE---ALEYRYPPTIGFG-LGLERL 211 (211)
T ss_pred ceEEEEEEccC-CCeEEEeeceeecCchhHhhhhheecc---cccccCceeecCc-cCccCC
Confidence 99999999996 578999999999999999999999865 3567799999888 898884
No 84
>PRK00413 thrS threonyl-tRNA synthetase; Reviewed
Probab=98.68 E-value=7.8e-08 Score=119.58 Aligned_cols=219 Identities=15% Similarity=0.218 Sum_probs=133.9
Q ss_pred ccccccccccccCCCCccccccCcccchHHHHHHhhhhcccchhhhhhhhhccccccccccCceEeeec--cceEEEEee
Q psy11602 200 DCLRKFVPAVYLNEAGEIPFVKTAPIDEEETKKQKKQKEGMKKKLTMSLFSQVGSHGRDTRGIFRVHQF--EKVEQFVLT 277 (1083)
Q Consensus 200 ~~L~p~~~~~~~~~~G~~pv~~P~~i~~d~~~~~~~k~~~~k~~~~~~~~~e~g~h~~dl~~i~Rv~qf--d~~~~~~~~ 277 (1083)
..|..++.+.+. ..||.+|.+|++...+..... ++...+.+ .||++... +.+..=+..
T Consensus 274 ~~i~~~~~~~~~-~~Gy~ei~tP~le~~~l~~~~----------------g~~~~~~~---~my~~~d~~~~~~~LRP~~ 333 (638)
T PRK00413 274 RELERYIRRKLR-KAGYQEVKTPQILDRELWETS----------------GHWDHYRE---NMFPTTESDGEEYALKPMN 333 (638)
T ss_pred HHHHHHHHHHHH-HCCCEEEECCeeCCHHHHHhc----------------CChhhhhh---ccceeecCCCcEEEEecCC
Confidence 445555555553 789999999999995555321 11111122 34443221 122221111
Q ss_pred C-------CCCCcchhhhh-hhhccccccccccc--CcCceeEEEeeeEEEEEEeCCCchhHHHHHHHHHHHHHHHHHHh
Q psy11602 278 S-------PHDDESWKMLD-EMIQNSEEFYADLD--TRGIFRVHQFEKVEQFVLTSPHDDESWKTLDEMIQNSEEFYADL 347 (1083)
Q Consensus 278 ~-------~~~~~s~~~~~-~~~~~~~~~~~~~~--trGl~Rvhqf~kvE~f~~~~~~~~~s~~~~e~~~~~~e~~~~~L 347 (1083)
- .+...||++|| +++....|||+.+. .+||+|+|||++++...++.+ +.+.+.+.+++..+.++|+.|
T Consensus 334 ~~~~~r~~~~~~~s~~~lP~r~~~~g~~fR~E~~~~~~Gl~R~reF~q~~~~~~g~~--~~~~~e~~eii~l~~~~~~~l 411 (638)
T PRK00413 334 CPGHVQIYKQGLRSYRDLPLRLAEFGTVHRYEPSGALHGLMRVRGFTQDDAHIFCTP--EQIEEEVKKVIDLILDVYKDF 411 (638)
T ss_pred cHHHHHHHhCcCCChhhCCceeeeccCeecCCCCCCCcCcceeeeeEEeeEEEEcCH--HHHHHHHHHHHHHHHHHHHHc
Confidence 1 11224678889 99999999999766 479999999999999999987 567778899999999999999
Q ss_pred CC-cEEEEeccC---CCcchhhh------------------------------ceeeEEEeeCCCCcEEeeecccCcccc
Q psy11602 348 GI-AYRVVNIVS---GALNHAAA------------------------------KKLDLEAWFPGSGAFRELVSCSNCLAY 393 (1083)
Q Consensus 348 ~l-pyRvv~~~~---~dl~~~a~------------------------------~~~DiE~w~P~~~~y~Ev~S~sn~~d~ 393 (1083)
|| +|++. +.+ +.+|.... .++|+.+ ..+.++...+++. ..||
T Consensus 412 g~~~~~i~-l~~r~~~~~g~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~--~~d~ 487 (638)
T PRK00413 412 GFEDYEVK-LSTRPEKRIGSDEMWDKAEAALKEALDELGLDYEIAPGEGAFYGPKIDFQL-KDALGREWQCGTI--QLDF 487 (638)
T ss_pred CCceEEEE-EecCCcccCCCHHHHHHHHHHHHHHHHHcCCCceecCCccccccceEEEEe-ecCCCCeEEeccE--eecc
Confidence 99 46553 332 33433321 1222222 2233444444332 2566
Q ss_pred c-ccccceEEecccCCCCceeeEEee-cccccchhHHHHHHHhhccCCCceecCcccccc
Q psy11602 394 Q-SRRLLVRYGQTKKMNEKIEFVHML-NATACATTRVICAILETHQTETGVRIPDCLRKF 451 (1083)
Q Consensus 394 q-arrl~iry~~~~~~~~~~~~~htl-n~t~~a~~R~i~ailEn~q~~~Gi~iP~~L~py 451 (1083)
+ .+|+++.|... ++....+.++ .|.+..+.|+|++|+|.+.. .+|..+.|+
T Consensus 488 ~~~~~~dl~Yt~~---~~~~~~p~~i~~~~~g~~eRli~~l~e~~~~----~~p~~~~p~ 540 (638)
T PRK00413 488 NLPERFDLTYVGE---DGEKHRPVMIHRAILGSMERFIGILIEHYAG----AFPTWLAPV 540 (638)
T ss_pred cChhhcCCEEECC---CCCccCcEEEEecceehHHHHHHHHHHHcCC----CCCcccCcc
Confidence 4 58889888654 2222333332 23333589999999998742 477666654
No 85
>PF13771 zf-HC5HC2H: PHD-like zinc-binding domain
Probab=98.58 E-value=9.7e-09 Score=95.51 Aligned_cols=67 Identities=19% Similarity=0.283 Sum_probs=54.8
Q ss_pred ecccccccCCcEEecccc--cCceeee-cCccCCcCCCccccCCCCCCCCceeEEeCCCCCCccceeceeeccCC
Q psy11602 817 HLVCALYIPGVAFGEVDR--LSNVTLF-EMPYSRWGAKSCALCPDESYARTELALQSPPVNCVPTLLVYMEVVFP 888 (1083)
Q Consensus 817 Hv~CAlw~pev~f~~~~~--~~pv~~~-~ip~~r~~~~~C~iC~~~~~~~~GaciqC~~~~C~~~fH~~~~~~~~ 888 (1083)
|+.||+|+|||.+.+... +.++... .++..++. ..|++|+++ .||+|+|...+|...||+.+....+
T Consensus 1 H~~Calwsp~v~~~~~~~~~~~~i~~v~~~~~~~~~-~~C~~C~~~----~Ga~i~C~~~~C~~~fH~~CA~~~~ 70 (90)
T PF13771_consen 1 HENCALWSPEVYFDESEDIGGFSIEDVEKEIKRRRK-LKCSICKKK----GGACIGCSHPGCSRSFHVPCARKAG 70 (90)
T ss_pred ChHHheecCceEEeCCCccccccHHhHHHHHHHHhC-CCCcCCCCC----CCeEEEEeCCCCCcEEChHHHccCC
Confidence 899999999999999874 4445443 57777776 489999974 6999999999999999997765544
No 86
>PRK07080 hypothetical protein; Validated
Probab=98.26 E-value=4e-06 Score=93.83 Aligned_cols=143 Identities=13% Similarity=0.152 Sum_probs=117.3
Q ss_pred ccccccccCcCceeEEEeeeEEEEEEeCCCchhHHHHHHHHHHHHHHHHHHhCCcEEEEeccCCCcchhhh---------
Q psy11602 296 EEFYADLDTRGIFRVHQFEKVEQFVLTSPHDDESWKTLDEMIQNSEEFYADLGIAYRVVNIVSGALNHAAA--------- 366 (1083)
Q Consensus 296 ~~~~~~~~trGl~Rvhqf~kvE~f~~~~~~~~~s~~~~e~~~~~~e~~~~~L~lpyRvv~~~~~dl~~~a~--------- 366 (1083)
.|||+... .++-|+..|.+.|.+.+-+| ++..+..+..++.+..+.+.|||+|+|..- .|=.|...
T Consensus 160 ~CFR~E~s-~dl~Rl~~F~mrE~V~iGt~--e~v~~~r~~w~e~~~~l~~~LgL~~~ve~A--nDPFF~~~gk~~a~~Qr 234 (317)
T PRK07080 160 YCFRHEPS-LDPARMQLFRMREYVRIGTP--EQIVAFRQSWIERGTAMADALGLPVEIDLA--NDPFFGRGGKIVAASQR 234 (317)
T ss_pred eeeccCCC-CCcHHHhheeeeEEEEecCH--HHHHHHHHHHHHHHHHHHHHhCCceeEeec--CCccccccchhhhhhhh
Confidence 48888664 68999999999999999999 578899999999999999999999998744 45444443
Q ss_pred -ceeeEEEeeC--CCCcEEeeecccCcccccccccceEEecccCCCCceeeEEeecccccchhHHHHHHHhhccCCCcee
Q psy11602 367 -KKLDLEAWFP--GSGAFRELVSCSNCLAYQSRRLLVRYGQTKKMNEKIEFVHMLNATACATTRVICAILETHQTETGVR 443 (1083)
Q Consensus 367 -~~~DiE~w~P--~~~~y~Ev~S~sn~~d~qarrl~iry~~~~~~~~~~~~~htln~t~~a~~R~i~ailEn~q~~~Gi~ 443 (1083)
-.+-+|.|+| +.++..-|.|+....|+++.+.+|+..+. ..+||- +.|..+.|+..|+|.+|.-+- -.
T Consensus 235 ~~~lKfEl~vpi~~~~~~tA~~S~NyH~dhFg~~f~I~~~~g-------~~ahTg-CvGFGlER~a~All~~hG~d~-~~ 305 (317)
T PRK07080 235 EQNLKFELLIPIYSDAPPTACMSFNYHMDHFGLTWGIRTADG-------AVAHTG-CVGFGLERLALALFRHHGLDP-AA 305 (317)
T ss_pred hccceeEEEEecCCCCCceEEEEEehhhhccccccCcccCCC-------CEeEEe-eeecCHHHHHHHHHHHhCCCh-hh
Confidence 2345677776 66789999999999999999999998653 468988 999999999999999987542 35
Q ss_pred cCccccccC
Q psy11602 444 IPDCLRKFV 452 (1083)
Q Consensus 444 iP~~L~py~ 452 (1083)
||+..|.=+
T Consensus 306 WP~~Vr~~l 314 (317)
T PRK07080 306 WPAAVRDVL 314 (317)
T ss_pred ccHHHHHHh
Confidence 788776543
No 87
>KOG4163|consensus
Probab=98.12 E-value=7.1e-07 Score=101.33 Aligned_cols=165 Identities=16% Similarity=0.133 Sum_probs=139.5
Q ss_pred cchhhhh-hhhcccccccc-cccCcCceeEEEeeeEEEEEEeCCCchhHHHHHHHHHHHHHHHHHH-hCCcEEEEeccCC
Q psy11602 283 ESWKMLD-EMIQNSEEFYA-DLDTRGIFRVHQFEKVEQFVLTSPHDDESWKTLDEMIQNSEEFYAD-LGIAYRVVNIVSG 359 (1083)
Q Consensus 283 ~s~~~~~-~~~~~~~~~~~-~~~trGl~Rvhqf~kvE~f~~~~~~~~~s~~~~e~~~~~~e~~~~~-L~lpyRvv~~~~~ 359 (1083)
+||+||| ++-+=.+.-|- -+++..++|.++|- ++.-+..+...++|++..-+||.++..+|.. |-+|..--.=...
T Consensus 179 ~ShRDLPlkLNQW~nVvRWEfk~p~PFlRtrEFL-WQEGHTAfat~~eA~eEvlqiLdlYa~vy~ellAiPVvkGrKse~ 257 (551)
T KOG4163|consen 179 QSHRDLPLKLNQWCNVVRWEFKHPQPFLRTREFL-WQEGHTAFATPEEAEEEVLQILDLYARVYEELLAIPVVKGRKSEK 257 (551)
T ss_pred HhhccCchhhhhhhhheeeeccCCCcchhhhHHH-HhcCcchhCCHhHHHHHHHHHHHHHHHHHHhhhccccccCccchh
Confidence 4889999 55555554444 67899999999995 6666666666689999999999999999765 5777766666778
Q ss_pred CcchhhhceeeEEEeeCCCCcEEeeecccCcccccccccceEEecccCCCCceeeEEeecccccchhHHHHHHHhhccCC
Q psy11602 360 ALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLAYQSRRLLVRYGQTKKMNEKIEFVHMLNATACATTRVICAILETHQTE 439 (1083)
Q Consensus 360 dl~~~a~~~~DiE~w~P~~~~y~Ev~S~sn~~d~qarrl~iry~~~~~~~~~~~~~htln~t~~a~~R~i~ailEn~q~~ 439 (1083)
+.+.++..++-+|+++|..++=.+=++-++++..+|+-++|.|.+. ..+.++||+. |+-|+. +|+|-+++=.|.++
T Consensus 258 EkFaGgd~TttvEa~i~~~GrgiQgaTSH~LGQNFSkmF~i~~ed~--~~g~~~fv~Q-nSWg~s-TRtiGvmiM~HgDd 333 (551)
T KOG4163|consen 258 EKFAGGDYTTTVEAFIPCSGRGIQGATSHHLGQNFSKMFEIVFEDP--GEGEKEFVWQ-NSWGLS-TRTIGVMIMTHGDD 333 (551)
T ss_pred hhccCCcceEEEeeeeccccccccccchhhhhHHHHHhhceeecCC--Cccchhheee-cccccc-cceeeEEEEEecCC
Confidence 8899999999999999999999999999999999999999999986 2567889986 577776 89999999999999
Q ss_pred CceecCccccccC
Q psy11602 440 TGVRIPDCLRKFV 452 (1083)
Q Consensus 440 ~Gi~iP~~L~py~ 452 (1083)
.|+++|+.+++.-
T Consensus 334 kGLvLPPrVA~vQ 346 (551)
T KOG4163|consen 334 KGLVLPPRVAPVQ 346 (551)
T ss_pred cccccCCcccceE
Confidence 9999999999874
No 88
>PRK14894 glycyl-tRNA synthetase; Provisional
Probab=98.03 E-value=2.2e-05 Score=92.83 Aligned_cols=129 Identities=17% Similarity=0.292 Sum_probs=102.2
Q ss_pred cCceeEEEeeeEEEEEEeCCCchhHHHHHHHHHHHHHHHHHHhCCc---EEEEeccCCCcchhhhceeeEEEeeCCCCcE
Q psy11602 305 RGIFRVHQFEKVEQFVLTSPHDDESWKTLDEMIQNSEEFYADLGIA---YRVVNIVSGALNHAAAKKLDLEAWFPGSGAF 381 (1083)
Q Consensus 305 rGl~Rvhqf~kvE~f~~~~~~~~~s~~~~e~~~~~~e~~~~~L~lp---yRvv~~~~~dl~~~a~~~~DiE~w~P~~~~y 381 (1083)
.||||+++|+..|+=.|+.|+ ++.++|...++....||.+|||| .|.-.....+|..=|..++|+|+-+|+-| |
T Consensus 183 ~~l~R~REF~q~EiE~Fv~P~--~~~~~~~y~~~~~~~fl~~iGi~~~~lrfr~h~~~ElAHYa~~~~D~e~~~p~~G-w 259 (539)
T PRK14894 183 NFLFRVREFEQMEIEYFVMPG--TDEEWHQRWLEARLAWWEQIGIPRSRITIYDVPPDELAHYSKRTFDLMYDYPNIG-V 259 (539)
T ss_pred CceeecccchhheEEEEeCCC--chHHHHHHHHHHHHHHHHHhCCCHHHeeeeecCcHHhhhhhhccEEEEEECCCCC-e
Confidence 699999999999999999995 57788999999999999999997 78888899999999999999999999554 9
Q ss_pred EeeecccCcccccc----c-----------------ccceEEecccCCCCceeeEEeecccccchhHHHHHHHhhccCC
Q psy11602 382 RELVSCSNCLAYQS----R-----------------RLLVRYGQTKKMNEKIEFVHMLNATACATTRVICAILETHQTE 439 (1083)
Q Consensus 382 ~Ev~S~sn~~d~qa----r-----------------rl~iry~~~~~~~~~~~~~htln~t~~a~~R~i~ailEn~q~~ 439 (1083)
.|+.-+.|-+||-= + ...+.|-+. ..++.-.+|.+ =....+.|++.|+||+--.+
T Consensus 260 ~E~~Gia~RtdyDL~~H~~~s~~~~l~~~~~~~~~s~~~l~~~~~--~~~~~~iP~Vi-EpS~G~dR~~~a~l~~~y~~ 335 (539)
T PRK14894 260 QEIEGIANRTDYDLGSHSKDQEQLNLTARVNPNEDSTARLTYFDQ--ASGRHVVPYVI-EPSAGVGRCMLAVMCEGYAE 335 (539)
T ss_pred EEEEEeecccccCHHHHhhhcccCCceeeeccccCCCceEEEEec--cCCcccCCcee-ecCcchhHHHHHHHHHHHhh
Confidence 99999999999731 1 112233221 12233345666 56678899999999865443
No 89
>COG0441 ThrS Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=97.97 E-value=2.2e-05 Score=95.48 Aligned_cols=227 Identities=18% Similarity=0.222 Sum_probs=159.5
Q ss_pred eeEecccccccccccccCCCCccccccCcccchHHHHHHhhhhcccchhhhhhhhhccccccccccCceEeeecc-ceEE
Q psy11602 195 GVRIPDCLRKFVPAVYLNEAGEIPFVKTAPIDEEETKKQKKQKEGMKKKLTMSLFSQVGSHGRDTRGIFRVHQFE-KVEQ 273 (1083)
Q Consensus 195 Gi~lP~~L~p~~~~~~~~~~G~~pv~~P~~i~~d~~~~~~~k~~~~k~~~~~~~~~e~g~h~~dl~~i~Rv~qfd-~~~~ 273 (1083)
|.++...|..|+...+. ..||.+|..|.+.+ .......++.+.+.+ ++|+....+ ....
T Consensus 219 G~~ir~~le~y~~~~~~-~~Gy~~V~TP~~~~----------------~~l~~~SGH~~~y~e---~mf~~~~~~~~~~l 278 (589)
T COG0441 219 GATIRNLLEDYVRTKLR-SYGYQEVKTPVLAD----------------LELWELSGHWDNYKE---DMFLTESDDREYAL 278 (589)
T ss_pred cccHHHHHHHHHHHHHH-hcCceEecCCeeee----------------cccchhccchhhccc---cceeeccCChhhee
Confidence 44555778888888774 78999999999999 444455566666666 677777654 1122
Q ss_pred EEeeC-------CCCCcchhhhh-hhhccccccccccc--CcCceeEEEeeeEEEEEEeCCCchhHHHHHHHHHHHHHHH
Q psy11602 274 FVLTS-------PHDDESWKMLD-EMIQNSEEFYADLD--TRGIFRVHQFEKVEQFVLTSPHDDESWKTLDEMIQNSEEF 343 (1083)
Q Consensus 274 ~~~~~-------~~~~~s~~~~~-~~~~~~~~~~~~~~--trGl~Rvhqf~kvE~f~~~~~~~~~s~~~~e~~~~~~e~~ 343 (1083)
-+..- -+...||++|| ++.....|+|+... ..||.||+-|+.=..=.+|++ ++..+.+...++....+
T Consensus 279 KpmNCpgh~~ifk~~~~SYR~LP~r~~E~g~v~R~E~SGal~GL~RvR~ftqdDaHifc~~--dQi~~E~~~~~~~i~~v 356 (589)
T COG0441 279 KPMNCPGHILIFKSGLRSYRELPLRLAEFGYVYRYEKSGALHGLMRVRGFTQDDAHIFCTP--DQIKDEFKGILELILEV 356 (589)
T ss_pred eeccCHhHHHHHhcCCcceeccchhhhhcceeecccCcchhhccccccceeecccceeccH--HHHHHHHHHHHHHHHHH
Confidence 22222 23466999999 99999999998544 579999999999888888997 67888899999999999
Q ss_pred HHHhCCc-EEEEeccC---------CCcchhh----hceeeEEEeeC-CC----------------CcEEeeecccCccc
Q psy11602 344 YADLGIA-YRVVNIVS---------GALNHAA----AKKLDLEAWFP-GS----------------GAFRELVSCSNCLA 392 (1083)
Q Consensus 344 ~~~L~lp-yRvv~~~~---------~dl~~~a----~~~~DiE~w~P-~~----------------~~y~Ev~S~sn~~d 392 (1083)
|+.||+. |++-..-. ||...++ .+.+.++.+.. |. ++..+++.+. .|
T Consensus 357 ~~~fg~~~y~~~ls~r~k~ig~d~~W~~a~~~l~~al~~~~~~~~~~~G~~aFyGPKid~~v~Dalgr~~q~~TIQ--lD 434 (589)
T COG0441 357 YKDFGFTDYEVKLSTRPKFIGSDEMWDKAEAALREALKEIGVEYVEEPGEGAFYGPKIDFQVKDALGREWQLGTIQ--LD 434 (589)
T ss_pred HHhcCCceEEEEEecCCcccCChhhhHHHHHHHHHHHHhhCceeeecCCceEEECcccceEEEeccCcceecceEE--Ee
Confidence 9999998 77766554 2222222 35566666654 33 3444555553 57
Q ss_pred ccc-cccceEEecccCCCCceeeEEeec-ccccchhHHHHHHHhhccCCCceecCccccccC
Q psy11602 393 YQS-RRLLVRYGQTKKMNEKIEFVHMLN-ATACATTRVICAILETHQTETGVRIPDCLRKFV 452 (1083)
Q Consensus 393 ~qa-rrl~iry~~~~~~~~~~~~~htln-~t~~a~~R~i~ailEn~q~~~Gi~iP~~L~py~ 452 (1083)
|+. .|+++.|.+.+ ++.+.+-|+. +..=++.|.|++|||+|. | .+|..|+|.-
T Consensus 435 f~lpeRF~l~Yv~~d---~~~~~PvmiHrai~GSiERfi~iLiE~~~---G-~~P~WLaPvQ 489 (589)
T COG0441 435 FNLPERFDLEYVDED---GEKKRPVIIHRAILGSIERFIGILLEHYA---G-ALPTWLAPVQ 489 (589)
T ss_pred cCChhhceEEEEcCC---CCccCCEEEEeccchhHHHHHHHHHHhcc---C-CCcccCCccE
Confidence 775 49999999763 3334444442 444478999999999554 3 8899888863
No 90
>KOG4443|consensus
Probab=97.93 E-value=3.9e-06 Score=99.90 Aligned_cols=56 Identities=27% Similarity=0.477 Sum_probs=53.1
Q ss_pred CccccccccccccccccCCCCCCcceecCccCCCccccCCCCCCCCCCCCCcCCCC
Q psy11602 1028 LSKQAWGVLSHKCGLCHLSHDPHTMAKCDTCHLYYHLACLDPPLLRMPKKTKLMGW 1083 (1083)
Q Consensus 1028 l~~~~~~~~~~~c~~C~~~~~~~~~~~Cd~C~~~yH~~Cl~Ppl~~~P~~~~~~~W 1083 (1083)
++..|+|+.+++|+.|+..+|+.+.++|+.||-.||.+|+.||++++|.+.|+|.|
T Consensus 59 l~~gWrC~~crvCe~c~~~gD~~kf~~Ck~cDvsyh~yc~~P~~~~v~sg~~~ckk 114 (694)
T KOG4443|consen 59 LSGGWRCPSCRVCEACGTTGDPKKFLLCKRCDVSYHCYCQKPPNDKVPSGPWLCKK 114 (694)
T ss_pred hcCCcccCCceeeeeccccCCcccccccccccccccccccCCccccccCcccccHH
Confidence 56679999999999999999999999999999999999999999999999988776
No 91
>cd00773 HisRS-like_core Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain. HisRS is a homodimer. It is responsible for the attachment of histidine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ. HisZ along with HisG catalyze the first reaction in histidine biosynthesis. HisZ is found only in a subset of bacteria and differs from HisRS in lacking a C-terminal anti-codon binding domain.
Probab=97.93 E-value=3.4e-05 Score=85.72 Aligned_cols=100 Identities=20% Similarity=0.240 Sum_probs=79.4
Q ss_pred CCCCCCCCeeEecCChHHHHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHH
Q psy11602 13 PEKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDES 92 (1083)
Q Consensus 13 ~~dr~~~~~~L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s 92 (1083)
+.|+.++.++|+|+...+++-+++....+ .++|+|+|+++++||+|....| |.|||.+.+.-.+..+. ..+
T Consensus 50 ~~d~~g~~l~LRpd~T~~iaR~~a~~~~~-~~~p~k~~y~g~vfR~e~~~~g-------~~re~~Q~g~Eiig~~~-~~~ 120 (261)
T cd00773 50 FKDKGGRDLALRPDLTAPVARAVAENLLS-LPLPLKLYYIGPVFRYERPQKG-------RYREFYQVGVEIIGSDS-PLA 120 (261)
T ss_pred EECCCCCEEEeCCCCcHHHHHHHHhcCcc-CCCCeEEEEEcCEEecCCCCCC-------CccceEEeceeeeCCCC-hHH
Confidence 35788899999999999999999987766 7899999999999999996433 78888877766666644 223
Q ss_pred HHHHHHHHHHHHHHHHHcCCceEEEEeccCCC
Q psy11602 93 WKMLDEMIQNSEEFYADLGIAYRVVNIVSGAL 124 (1083)
Q Consensus 93 ~~~~~~~~~~y~~if~~LgLpyrvv~~~sgdl 124 (1083)
+ .|++....++++.||++-..+.+....+
T Consensus 121 d---aE~i~l~~~~l~~lg~~~~~i~l~~~~i 149 (261)
T cd00773 121 D---AEVIALAVEILEALGLKDFQIKINHRGI 149 (261)
T ss_pred H---HHHHHHHHHHHHHcCCCceEEEECCHHH
Confidence 2 6799999999999998755555554444
No 92
>PLN02734 glycyl-tRNA synthetase
Probab=97.90 E-value=3.1e-05 Score=95.16 Aligned_cols=87 Identities=29% Similarity=0.366 Sum_probs=76.0
Q ss_pred cCceeEEEeeeEEEEEEeCCCch---------------------------------hH-------HHHHHHHHHHHHHHH
Q psy11602 305 RGIFRVHQFEKVEQFVLTSPHDD---------------------------------ES-------WKTLDEMIQNSEEFY 344 (1083)
Q Consensus 305 rGl~Rvhqf~kvE~f~~~~~~~~---------------------------------~s-------~~~~e~~~~~~e~~~ 344 (1083)
.||+|+++|+..|+=+|++|+.. ++ .++|.-.+.....||
T Consensus 293 ~gl~R~REF~qaEiE~Fv~P~~k~h~~f~~v~~~~l~l~~~~~q~~~~~~~~~t~~eAv~~gii~ne~l~Y~~~r~~~fl 372 (684)
T PLN02734 293 QGLLRVREFTLAEIEHFVDPEDKSHPKFSEVADLEFLLFPREEQLGGQKAKPMRLGEAVSKGIVNNETLGYFIGRTYLFL 372 (684)
T ss_pred cceeeechhhhhhhheecCcccccccchhhhhhhhhhcccHhhhhccCCcccccHHHHHHcCccchHHHHHHHHHHHHHH
Confidence 69999999999999999999742 22 457888999999999
Q ss_pred HHhCCc---EEEEeccCCCcchhhhceeeEEEeeCCCCcEEeeecccCcccc
Q psy11602 345 ADLGIA---YRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLAY 393 (1083)
Q Consensus 345 ~~L~lp---yRvv~~~~~dl~~~a~~~~DiE~w~P~~~~y~Ev~S~sn~~d~ 393 (1083)
.+|||+ .|.-.--+.+|..=|..++|+|+-+|- .|.|++-|.+=+||
T Consensus 373 ~~iGi~~~~lRfRqh~~~EmAHYA~dcwD~E~~~~~--GWiE~vG~AdRs~y 422 (684)
T PLN02734 373 TKLGIDKERLRFRQHLANEMAHYAADCWDAEIECSY--GWIECVGIADRSAY 422 (684)
T ss_pred HHcCCCHHHeeecccCcHHHhhhhhccEeEEEecCC--CcEEEEEecccccc
Confidence 999996 677777889999999999999999964 59999999888886
No 93
>KOG0825|consensus
Probab=97.86 E-value=4.8e-06 Score=99.67 Aligned_cols=46 Identities=30% Similarity=0.694 Sum_probs=42.6
Q ss_pred cccccccccCCCCCCcceecCccCCC-ccccCCCCCCCCCCCCCcCC
Q psy11602 1036 LSHKCGLCHLSHDPHTMAKCDTCHLY-YHLACLDPPLLRMPKKTKLM 1081 (1083)
Q Consensus 1036 ~~~~c~~C~~~~~~~~~~~Cd~C~~~-yH~~Cl~Ppl~~~P~~~~~~ 1081 (1083)
+-..|.+|...+-.+.||+||.||.+ ||++||||||..+|-+.|.|
T Consensus 214 E~~~C~IC~~~DpEdVLLLCDsCN~~~YH~YCLDPdl~eiP~~eWYC 260 (1134)
T KOG0825|consen 214 EEVKCDICTVHDPEDVLLLCDSCNKVYYHVYCLDPDLSESPVNEWYC 260 (1134)
T ss_pred ccccceeeccCChHHhheeecccccceeeccccCcccccccccceec
Confidence 55679999999999999999999999 99999999999999999654
No 94
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=97.84 E-value=6e-06 Score=68.69 Aligned_cols=36 Identities=36% Similarity=0.869 Sum_probs=33.3
Q ss_pred ccccccCCCCCCcceecCccCCCccccCCCCCCCCC
Q psy11602 1039 KCGLCHLSHDPHTMAKCDTCHLYYHLACLDPPLLRM 1074 (1083)
Q Consensus 1039 ~c~~C~~~~~~~~~~~Cd~C~~~yH~~Cl~Ppl~~~ 1074 (1083)
.|.+|++.++.+.|+.||.|+.+||+.|+.||++..
T Consensus 1 ~C~vC~~~~~~~~~i~C~~C~~~~H~~C~~~~~~~~ 36 (51)
T PF00628_consen 1 YCPVCGQSDDDGDMIQCDSCNRWYHQECVGPPEKAE 36 (51)
T ss_dssp EBTTTTSSCTTSSEEEBSTTSCEEETTTSTSSHSHH
T ss_pred eCcCCCCcCCCCCeEEcCCCChhhCcccCCCChhhc
Confidence 388999999999999999999999999999999843
No 95
>TIGR00389 glyS_dimeric glycyl-tRNA synthetase, dimeric type. This model describes a glycyl-tRNA synthetase distinct from the two alpha and two beta chains of the tetrameric E. coli glycyl-tRNA synthetase. This enzyme is a homodimeric class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes His, Ser, Pro, and this set of glycyl-tRNA synthetases.
Probab=97.73 E-value=9.3e-05 Score=89.61 Aligned_cols=146 Identities=23% Similarity=0.327 Sum_probs=107.9
Q ss_pred CcCceeEEEeeeEEEEEEeCCCchh--------------------------H-------HHHHHHHHHHHHHHHHHhCCc
Q psy11602 304 TRGIFRVHQFEKVEQFVLTSPHDDE--------------------------S-------WKTLDEMIQNSEEFYADLGIA 350 (1083)
Q Consensus 304 trGl~Rvhqf~kvE~f~~~~~~~~~--------------------------s-------~~~~e~~~~~~e~~~~~L~lp 350 (1083)
-.||+|+++|+..|+=.|++|+..+ | .+.+.-.+.....||..|||+
T Consensus 200 r~~l~R~REF~q~EiE~F~~p~~~~~~~f~~~~~~~~~l~~~~~~~~~~~eav~~g~i~n~~~~y~~~~~~~fl~~~Gi~ 279 (551)
T TIGR00389 200 RNGLFRVREFEQAEIEFFVHPLDKSHPKFEEVKQDILPLLPRQMQESGIGEAVESGMIENETLGYFIARVKQFLLEIGIN 279 (551)
T ss_pred ccceEEeehhhhchhheecCcccccchhhHHHHHHHHhhccchhhhccHHHHHHhcccchHHHHHHHHHHHHHHHHhCCC
Confidence 3699999999999999999996211 1 124444555668899999995
Q ss_pred ---EEEEeccCCCcchhhhceeeEEEeeCCCCcEEeeecccCccccccc------ccceEEecc----------------
Q psy11602 351 ---YRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLAYQSR------RLLVRYGQT---------------- 405 (1083)
Q Consensus 351 ---yRvv~~~~~dl~~~a~~~~DiE~w~P~~~~y~Ev~S~sn~~d~qar------rl~iry~~~---------------- 405 (1083)
.|.-.-.+.+|..=|..++|+|+-+|- .|.|++-+.+=+||-=. --.+.|.+.
T Consensus 280 ~~~lrfrqh~~~e~AHYa~~~~D~e~~~~~--Gw~E~~G~a~R~~yDL~~H~~~s~~~l~~~~~~~~p~~~~~~~~~~~~ 357 (551)
T TIGR00389 280 PDKLRFRQHDKNEMAHYAKDCWDFEFLTPY--GWIECVGIADRGDYDLTQHSKFSGKSLSVFDKLDEPREVTKWEIEPNK 357 (551)
T ss_pred HHHeeecccCcHHHhhhccccEeEEEecCC--CcEEEEEeccccccChHHHHHhhCCCeEEEeecCCCceeEEEEEecch
Confidence 677778889999999999999999974 59999999998886311 112233211
Q ss_pred ------------------------------------------------cCCCCceeeEEeecccccchhHHHHHHHhhcc
Q psy11602 406 ------------------------------------------------KKMNEKIEFVHMLNATACATTRVICAILETHQ 437 (1083)
Q Consensus 406 ------------------------------------------------~~~~~~~~~~htln~t~~a~~R~i~ailEn~q 437 (1083)
+...++...+|++- .++.+.|+|.||||+..
T Consensus 358 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~VIe-pS~GIdRIi~ALle~~~ 436 (551)
T TIGR00389 358 KKFGPKFRKDAKKIESNLSEDDLEEREEELDKNEVELDKDLVEIEMVTEVVHGEKYIPHVIE-PSFGIDRIIYALLEHSY 436 (551)
T ss_pred hhhhhhhHhHHHHHHHhhcHHHHHHHHhhhhccceecchhhhhheeeeeccCCcEecceEEE-cccCHHHHHHHHHHhhC
Confidence 11134566788884 55789999999999776
Q ss_pred CCC--------ceecCccccccC
Q psy11602 438 TET--------GVRIPDCLRKFV 452 (1083)
Q Consensus 438 ~~~--------Gi~iP~~L~py~ 452 (1083)
.++ ++.+|..|+|+-
T Consensus 437 ~e~~~~~~~r~vL~lp~~lAP~k 459 (551)
T TIGR00389 437 QEEVLDGEEREVLRLPPHLAPIK 459 (551)
T ss_pred ccccccccccceeccCCccCCce
Confidence 621 368999999973
No 96
>KOG4443|consensus
Probab=97.65 E-value=2e-05 Score=93.96 Aligned_cols=97 Identities=22% Similarity=0.525 Sum_probs=72.2
Q ss_pred eccccCCCCCCCCceeeccCCCCcccccchhhhHHHHHHhhhhcccceecccccCCCCCccccccCCCCCCCCCcEEEcc
Q psy11602 633 CCVCLGERSDDVNEIVECDSCGVTVHEVKIQQEFLAIKFLIRYLLFWFQLEDFSKFSKILVCCVCLGERSDDVNEIVECD 712 (1083)
Q Consensus 633 c~~c~g~~~~~~~~l~~C~~Cg~~~h~~~~~~~~~~i~~~~~~~~~W~~~~d~~~~~~~~~C~VC~~~~~~~~n~iv~Cd 712 (1083)
|-+|.+....--..++.|++||..+|+.|+ .+.+-..... ..|.|..+. .|-.|. ...+...+++|+
T Consensus 21 c~l~~s~G~~~ag~m~ac~~c~~~yH~~cv--t~~~~~~~l~--~gWrC~~cr-------vCe~c~--~~gD~~kf~~Ck 87 (694)
T KOG4443|consen 21 CPLCGSSGKGRAGRLLACSDCGQKYHPYCV--TSWAQHAVLS--GGWRCPSCR-------VCEACG--TTGDPKKFLLCK 87 (694)
T ss_pred hhhhccccccccCcchhhhhhcccCCcchh--hHHHhHHHhc--CCcccCCce-------eeeecc--ccCCcccccccc
Confidence 777777666666779999999999999997 2222222111 247775444 888888 556789999999
Q ss_pred cCCcccccccccccccCCCcccCCCCCCCCcccccccC
Q psy11602 713 SCGVTVHEGCYGVQDTASISSTVSSCSTEPWFCESCRA 750 (1083)
Q Consensus 713 ~C~i~VH~~CYGv~~~~~~~~~~~~~~~~~W~Cd~C~~ 750 (1083)
.|++.||-+|--+..... +.++|+|..|..
T Consensus 88 ~cDvsyh~yc~~P~~~~v--------~sg~~~ckk~~~ 117 (694)
T KOG4443|consen 88 RCDVSYHCYCQKPPNDKV--------PSGPWLCKKCTR 117 (694)
T ss_pred cccccccccccCCccccc--------cCcccccHHHHh
Confidence 999999999977765432 789999988865
No 97
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=97.65 E-value=1.7e-05 Score=65.93 Aligned_cols=50 Identities=36% Similarity=0.874 Sum_probs=39.8
Q ss_pred cccccCCCCCCCCCcEEEcccCCcccccccccccccCCCcccCCCCCCCCcccccccC
Q psy11602 693 VCCVCLGERSDDVNEIVECDSCGVTVHEGCYGVQDTASISSTVSSCSTEPWFCESCRA 750 (1083)
Q Consensus 693 ~C~VC~~~~~~~~n~iv~Cd~C~i~VH~~CYGv~~~~~~~~~~~~~~~~~W~Cd~C~~ 750 (1083)
+|.||.+ ..+.+.+|+|+.|+..||..|+++...... .+.+.|+|..|..
T Consensus 1 ~C~vC~~--~~~~~~~i~C~~C~~~~H~~C~~~~~~~~~------~~~~~w~C~~C~~ 50 (51)
T PF00628_consen 1 YCPVCGQ--SDDDGDMIQCDSCNRWYHQECVGPPEKAEE------IPSGDWYCPNCRP 50 (51)
T ss_dssp EBTTTTS--SCTTSSEEEBSTTSCEEETTTSTSSHSHHS------HHSSSBSSHHHHH
T ss_pred eCcCCCC--cCCCCCeEEcCCCChhhCcccCCCChhhcc------CCCCcEECcCCcC
Confidence 4889996 567899999999999999999999765221 1334899999963
No 98
>TIGR00442 hisS histidyl-tRNA synthetase. This model finds a histidyl-tRNA synthetase in every completed genome. Apparent second copies from Bacillus subtilis, Synechocystis sp., and Aquifex aeolicus are slightly shorter, more closely related to each other than to other hisS proteins, and actually serve as regulatory subunits for an enzyme of histidine biosynthesis. They were excluded from the seed alignment and score much lower than do single copy histidyl-tRNA synthetases of other genomes not included in the seed alignment. These putative second copies of HisS score below the trusted cutoff. The regulatory protein kinase GCN2 of Saccharomyces cerevisiae (YDR283c), and related proteins from other species designated eIF-2 alpha kinase, have a domain closely related to histidyl-tRNA synthetase that may serve to detect and respond to uncharged tRNA(his), an indicator of amino acid starvation; these regulatory proteins are not orthologous and so score below the noise cutoff.
Probab=97.49 E-value=0.00042 Score=81.63 Aligned_cols=98 Identities=20% Similarity=0.179 Sum_probs=78.1
Q ss_pred CCCCCCCCeeEecCChHHHHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHH
Q psy11602 13 PEKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDES 92 (1083)
Q Consensus 13 ~~dr~~~~~~L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s 92 (1083)
..|+.++.++|+|....+++-+++.. .++.++|+|+|+++++||+|....| |.+||.+.+...+..+. ..+
T Consensus 65 ~~d~~g~~l~LRpD~T~~iaR~~~~~-~~~~~~p~r~~y~g~vfR~e~~~~g-------r~ref~Q~g~eiig~~~-~~~ 135 (397)
T TIGR00442 65 FKDKGGRSLTLRPEGTAPVARAVIEN-KLLLPKPFKLYYIGPMFRYERPQKG-------RYRQFHQFGVEVIGSDS-PLA 135 (397)
T ss_pred EECCCCCEEeecCCCcHHHHHHHHhc-ccccCCCeEEEEEcCeecCCCCCCC-------cccceEEcCeeeeCCCC-HHH
Confidence 46888999999999999999998754 3467899999999999999974333 89999999999998776 334
Q ss_pred HHHHHHHHHHHHHHHHHcCCceEEEEeccC
Q psy11602 93 WKMLDEMIQNSEEFYADLGIAYRVVNIVSG 122 (1083)
Q Consensus 93 ~~~~~~~~~~y~~if~~LgLpyrvv~~~sg 122 (1083)
+ .+++....++|+.||++=..+.+...
T Consensus 136 d---~E~i~l~~e~l~~lg~~~~~i~i~~~ 162 (397)
T TIGR00442 136 D---AEIIALAAEILKELGIKDFTLEINSL 162 (397)
T ss_pred H---HHHHHHHHHHHHHcCCCceEEEecCc
Confidence 3 46888899999999997333444333
No 99
>PRK09537 pylS pyrolysyl-tRNA synthetase; Reviewed
Probab=97.44 E-value=0.00037 Score=81.74 Aligned_cols=86 Identities=17% Similarity=0.264 Sum_probs=69.4
Q ss_pred CCCeeEecCChHHHHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHHHHHHH
Q psy11602 18 LDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESWKMLD 97 (1083)
Q Consensus 18 ~~~~~L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s~~~~~ 97 (1083)
++.++|+|+-...++.+++.. ..+.++|+|++.++++||.|.... -+.+||.+.+...+.. ...|+
T Consensus 255 deel~LRpsLtPsLlr~la~n-~k~~~~P~RIFEIG~VFR~E~~g~-------~hlrEf~Ql~~~iiGs------~~~f~ 320 (417)
T PRK09537 255 DKNFCLRPMLAPGLYNYLRKL-DRILPDPIKIFEIGPCYRKESDGK-------EHLEEFTMVNFCQMGS------GCTRE 320 (417)
T ss_pred CCceEehhhhHHHHHHHHHhh-hhcccCCeeEEEEeceEecCCCCC-------CCcceEEEEEEEEeCC------chHHH
Confidence 457899999999988877632 345678999999999999997322 2789999888876632 23678
Q ss_pred HHHHHHHHHHHHcCCceEEE
Q psy11602 98 EMIQNSEEFYADLGIAYRVV 117 (1083)
Q Consensus 98 ~~~~~y~~if~~LgLpyrvv 117 (1083)
++....+.+|+.|||+|.++
T Consensus 321 dL~~lleeLL~~LGI~f~i~ 340 (417)
T PRK09537 321 NLENIIDDFLKHLGIDYEII 340 (417)
T ss_pred HHHHHHHHHHHHCCCCcEEe
Confidence 89999999999999999888
No 100
>cd00774 GlyRS-like_core Glycyl-tRNA synthetase (GlyRS)-like class II core catalytic domain. GlyRS functions as a homodimer in eukaryotes, archaea and some bacteria and as a heterotetramer in the remainder of prokaryotes. It is responsible for the attachment of glycine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP binding and hydrolysis. This alignment contains only sequences from the GlyRS form which homodimerizes. The heterotetramer glyQ is in a different family of class II aaRS. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. This domain is also found at the N-terminus of the accessory subunit of mitochondrial polymerase gamma (Pol gamma b). Pol gamma b stimulates processive DNA synthesis and is functional as a homodimer, which can associate with the catalytic subunit Pol gamma alpha to form a heterotrimer. Despite significant both structural and sequence similarity with Gly
Probab=97.42 E-value=3.7e-05 Score=85.23 Aligned_cols=104 Identities=23% Similarity=0.305 Sum_probs=93.2
Q ss_pred hhh-hhhcccccccccccC-cCceeEEEeeeEEEEEEeCCCchhHHHHHHHHHHHHHHHHHHhCC---cEEEEeccCCCc
Q psy11602 287 MLD-EMIQNSEEFYADLDT-RGIFRVHQFEKVEQFVLTSPHDDESWKTLDEMIQNSEEFYADLGI---AYRVVNIVSGAL 361 (1083)
Q Consensus 287 ~~~-~~~~~~~~~~~~~~t-rGl~Rvhqf~kvE~f~~~~~~~~~s~~~~e~~~~~~e~~~~~L~l---pyRvv~~~~~dl 361 (1083)
+|| ++++...+||..... .||.|+++|+..++-.|+.|+ ++.+.++.++.....||+.+|+ ..|+....+.++
T Consensus 105 ~lP~~~~qig~~fR~E~~~~~gl~R~ReF~q~d~~~f~~~~--~~~e~~~~v~~~~~~~l~~~G~~~~~~r~~~~~~~e~ 182 (254)
T cd00774 105 KLPFGVAQIGKSFRNEISPRNGLFRVREFTQAEIEFFVDPE--KSHPWFDYWADQRLKWLPKFAQSPENLRLTDHEKEEL 182 (254)
T ss_pred CCCchhhhhchhhccccCcccceeeeccchhhheeeeECCC--CchHHHHHHHHHHHHHHHHcCCCccceEEEecccHhh
Confidence 788 889999999996544 699999999999999999995 7889999999999999999994 479999999999
Q ss_pred chhhhceeeEEEeeCCCCcEEeeecccCccccc
Q psy11602 362 NHAAAKKLDLEAWFPGSGAFRELVSCSNCLAYQ 394 (1083)
Q Consensus 362 ~~~a~~~~DiE~w~P~~~~y~Ev~S~sn~~d~q 394 (1083)
+.-|...+|+|+.+| ..|.|+..+++-+|+.
T Consensus 183 a~ya~~~~d~~~~~~--~~w~e~~Gi~~~~~~~ 213 (254)
T cd00774 183 AHYANETLDYFYAFP--HGFLELEGIANRGDRF 213 (254)
T ss_pred hhhhHHHHHHHHHHh--hhHHHHcCCCcchhHH
Confidence 999999999999997 4688999999888864
No 101
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the KOG4323|consensus
Probab=97.41 E-value=6.1e-05 Score=88.21 Aligned_cols=110 Identities=25% Similarity=0.359 Sum_probs=76.1
Q ss_pred eeeccccCCCCCCCCceeeccCCCCcccccchhhhHHHHHHhhhhcccceecc---------------------------
Q psy11602 631 LVCCVCLGERSDDVNEIVECDSCGVTVHEVKIQQEFLAIKFLIRYLLFWFQLE--------------------------- 683 (1083)
Q Consensus 631 ~~c~~c~g~~~~~~~~l~~C~~Cg~~~h~~~~~~~~~~i~~~~~~~~~W~~~~--------------------------- 683 (1083)
..|++|.........++.+|..|+..+|-.|- +.-. ..+..|..-+
T Consensus 84 ~~~nv~~s~~~~p~~e~~~~~r~~~~~~q~~~------i~~~-~~~~~~~~~~c~~~~~~~~g~a~K~g~~a~~~l~y~~ 156 (464)
T KOG4323|consen 84 LNPNVLTSETVLPENEKVICGRCKSGYHQGCN------IPRF-PSLDIGESTECVFPIFSQEGGALKKGRLARPSLPYPE 156 (464)
T ss_pred cCCcccccccccCchhhhhhhhhccCcccccC------ccCc-CcCCccccccccccccccccccccccccccccccCcc
Confidence 46999988888777789999999999987661 0000 0001111110
Q ss_pred -----cccCCCCCccccccCCCCCCCCCcEEEcccCCcccccccccccccCCCcccCCCCCCCCcccccccCCC
Q psy11602 684 -----DFSKFSKILVCCVCLGERSDDVNEIVECDSCGVTVHEGCYGVQDTASISSTVSSCSTEPWFCESCRAGI 752 (1083)
Q Consensus 684 -----d~~~~~~~~~C~VC~~~~~~~~n~iv~Cd~C~i~VH~~CYGv~~~~~~~~~~~~~~~~~W~Cd~C~~~~ 752 (1083)
|.. .-.++.|+||..+-+...|.||+|++|.--|||.|+.+...+.. ...+...|+|+.|.+..
T Consensus 157 ~~l~wD~~-~~~n~qc~vC~~g~~~~~NrmlqC~~C~~~fHq~Chqp~i~~~l----~~D~~~~w~C~~C~~~~ 225 (464)
T KOG4323|consen 157 ASLDWDSG-HKVNLQCSVCYCGGPGAGNRMLQCDKCRQWYHQACHQPLIKDEL----AGDPFYEWFCDVCNRGP 225 (464)
T ss_pred cccccCcc-ccccceeeeeecCCcCccceeeeecccccHHHHHhccCCCCHhh----ccCccceEeehhhccch
Confidence 100 11245699999888888999999999999999999988654322 22267889999999875
No 103
>PTZ00326 phenylalanyl-tRNA synthetase alpha chain; Provisional
Probab=97.40 E-value=0.0015 Score=78.10 Aligned_cols=149 Identities=18% Similarity=0.274 Sum_probs=101.5
Q ss_pred CCeeEecCChHHHHHHHhcccCCC----CCC-CceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHHH
Q psy11602 19 DDKYLIATSEQPICAVHRDSWLPE----ASL-PIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESW 93 (1083)
Q Consensus 19 ~~~~L~pTsE~~i~~l~~~~i~s~----~~L-Plklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s~ 93 (1083)
....+--||-++...-+....... ..+ |+|+++++++||+|.-.++ |.+||..+|...+...-
T Consensus 325 a~~~vLRtHtTa~~aR~l~~~~~~~~~~~~~~P~k~fsigrVfR~d~~Dat-------H~~eFhQ~Eg~vi~~~~----- 392 (494)
T PTZ00326 325 ARKNILRTHTTAVSARMLYKLAQEYKKTGPFKPKKYFSIDRVFRNETLDAT-------HLAEFHQVEGFVIDRNL----- 392 (494)
T ss_pred hccccccCCCCHHHHHHHHhhccccccccCCCCceEEecCCEecCCCCCCC-------cCceeEEEEEEEEeCCC-----
Confidence 334455566665555333322211 223 9999999999999996665 89999999999998876
Q ss_pred HHHHHHHHHHHHHHHHcCCceEEEEeccCCCCcccceeEeEEEEecCCCceeEEEEcCCCchhhhhcccceeccCCCccc
Q psy11602 94 KMLDEMIQNSEEFYADLGIAYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQSRRLLVRYGQTKQKIY 173 (1083)
Q Consensus 94 ~~~~~~~~~y~~if~~LgLpyrvv~~~sgdlg~~as~~~diE~~~P~~~~~~ev~s~s~cgdyqs~rl~i~y~~~~~~~n 173 (1083)
.+.+++.....||++||+. .+--.|+ -++--.-.+.++++.|..++|+||+.|-....-.-+.+++ ..+..+-
T Consensus 393 -s~~~L~~~l~~f~~~lG~~-~~RfrP~--yfPfTEPS~Ev~v~~~~~gkWIEIgg~Gm~rpevL~~~Gi---~~~~~~~ 465 (494)
T PTZ00326 393 -TLGDLIGTIREFFRRIGIT-KLRFKPA--FNPYTEPSMEIFGYHPGLKKWVEVGNSGIFRPEMLRPMGF---PEDVTVI 465 (494)
T ss_pred -CHHHHHHHHHHHHHhcCCC-ceEEecC--CCCCCCCeeEEEEEecCCCcEEEEeCcCccCHHHHHhcCC---CCcceEE
Confidence 3567888899999999873 2222233 2333334567788999888899999887766444455665 2222367
Q ss_pred cccccchhheehe
Q psy11602 174 ATACATTRVICAI 186 (1083)
Q Consensus 174 ~tg~a~~Rli~Al 186 (1083)
+.|+++.|+.-..
T Consensus 466 A~GlGleRlaMi~ 478 (494)
T PTZ00326 466 AWGLSLERPTMIK 478 (494)
T ss_pred EEEecHHHHHHHH
Confidence 8899999986443
No 104
>KOG1637|consensus
Probab=97.39 E-value=0.0001 Score=85.21 Aligned_cols=179 Identities=20% Similarity=0.298 Sum_probs=121.6
Q ss_pred CCeeEecCChHHHHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHHHHHHHH
Q psy11602 19 DDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESWKMLDE 98 (1083)
Q Consensus 19 ~~~~L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s~~~~~~ 98 (1083)
+++.|-|-.--.-.=||+..-+||++||+|+...+.--|+|+- -.--||.|+|.|..-|+..|+++++ -++.+..
T Consensus 246 e~~~LKPMNCPgHcLmf~~r~rS~reLPlR~aDFg~LHRnE~S---GaLsGLTRvRrFqQDDaHIFCt~~Q--i~~Eik~ 320 (560)
T KOG1637|consen 246 EEFALKPMNCPGHCLMFAHRDRSYRELPLRFADFGVLHRNEAS---GALSGLTRVRRFQQDDAHIFCTPDQ--VKEEIKG 320 (560)
T ss_pred hhhccCccCCCccccccccCCccHhhCCccccCcceeeecccc---ccccccceeeeecccCceEEecCcc--HHHHHHH
Confidence 3466666666666668888899999999999999999999994 3457999999999999999999986 7888888
Q ss_pred HHHHHHHHHHHcCCceEEEEe--ccCCCCcc---cceeEeE----------EEEecCCCce----------eEEEEcCCC
Q psy11602 99 MIQNSEEFYADLGIAYRVVNI--VSGALNHA---AAKKLDL----------EAWFPGSGAF----------RELVSCSNC 153 (1083)
Q Consensus 99 ~~~~y~~if~~LgLpyrvv~~--~sgdlg~~---as~~~di----------E~~~P~~~~~----------~ev~s~s~c 153 (1083)
.++--+.+|.-+|..|....- |.+=+|.- ...+.++ +..-|+++.| .-+..-++|
T Consensus 321 ~l~fl~~vY~~fgf~f~l~lSTRPe~~lG~l~~Wd~AE~~L~~al~e~g~pw~lN~GDGAFYGPKIDi~l~Dal~r~hQc 400 (560)
T KOG1637|consen 321 CLDFLDYVYGVFGFTFKLNLSTRPEKFLGDLETWDEAEFKLEEALNESGEPWVLNPGDGAFYGPKIDITLDDALGRKHQC 400 (560)
T ss_pred HHHHHHHHHHhccccceeEeccChHHhccCHHHHHHHHHHHHHHHHHhCCCceecCCCcccccceeeeEhhhhcCcccce
Confidence 888888888888877765332 22222210 0000000 1122233222 111223334
Q ss_pred ----chhh-hhcccceeccCCCc-------cccccccchhheeheeccccCCCeeEecccccccc
Q psy11602 154 ----LDYQ-SRRLLVRYGQTKQK-------IYATACATTRVICAILETHQTETGVRIPDCLRKFV 206 (1083)
Q Consensus 154 ----gdyq-s~rl~i~y~~~~~~-------~n~tg~a~~Rli~Alle~~~~~~Gi~lP~~L~p~~ 206 (1083)
.||| -.|++..|.+.++. .-+.-.++.|+++.|+|+|.. .||-.|.|.+
T Consensus 401 aTIQLDFqLP~rFdL~y~~~~g~~erPVmIHRAIlGSvERmiaiL~E~~~g----kwPFWlSPRq 461 (560)
T KOG1637|consen 401 ATIQLDFQLPIRFDLEYETEDGDLERPVMIHRAILGSVERMIAILLESYGG----KWPFWLSPRQ 461 (560)
T ss_pred eeeeecccChhhcCceeecccccccchhhHHHHHhhhHHHHHHHHHHHhCC----CCCeeeccce
Confidence 4555 57899999986654 222334669999999998765 5787788887
No 105
>KOG4323|consensus
Probab=97.35 E-value=9.5e-05 Score=86.61 Aligned_cols=127 Identities=22% Similarity=0.277 Sum_probs=92.2
Q ss_pred HHHHhhhhcccceecccccC---CCCCccccccCCCCCCCCCcEEEcccCCcccccccccccccCCCcccCCCCCCCCcc
Q psy11602 668 AIKFLIRYLLFWFQLEDFSK---FSKILVCCVCLGERSDDVNEIVECDSCGVTVHEGCYGVQDTASISSTVSSCSTEPWF 744 (1083)
Q Consensus 668 ~i~~~~~~~~~W~~~~d~~~---~~~~~~C~VC~~~~~~~~n~iv~Cd~C~i~VH~~CYGv~~~~~~~~~~~~~~~~~W~ 744 (1083)
.+.|.+.+ +.|++++. ..+...|.||........|.+++|++|+.++||.|..+... ..+.|.
T Consensus 61 ~~~f~d~s----~~~~~~s~as~~~~e~~~nv~~s~~~~p~~e~~~~~r~~~~~~q~~~i~~~~----------~~~~~~ 126 (464)
T KOG4323|consen 61 LTSFEDDS----VLWDDISKASLPSSELNPNVLTSETVLPENEKVICGRCKSGYHQGCNIPRFP----------SLDIGE 126 (464)
T ss_pred cccccccc----ccccccccccCCccccCCcccccccccCchhhhhhhhhccCcccccCccCcC----------cCCccc
Confidence 56666666 77777764 67889999999988888999999999999999999877654 356788
Q ss_pred cccccCCC--------------------------------CCCceeecCCCCccccccccccccccchhhhhhhhccccc
Q psy11602 745 CESCRAGI--------------------------------AEPTCELCPNFGENHLRGLFENIKNGHAQRDRMRYHACHL 792 (1083)
Q Consensus 745 Cd~C~~~~--------------------------------~~~~C~LCp~~g~~~~~~~~~~~k~~~~~~~~~~~~~~~~ 792 (1083)
+..|.... .+.+|++|.+++-.
T Consensus 127 ~~~c~~~~~~~~g~a~K~g~~a~~~l~y~~~~l~wD~~~~~n~qc~vC~~g~~~-------------------------- 180 (464)
T KOG4323|consen 127 STECVFPIFSQEGGALKKGRLARPSLPYPEASLDWDSGHKVNLQCSVCYCGGPG-------------------------- 180 (464)
T ss_pred cccccccccccccccccccccccccccCcccccccCccccccceeeeeecCCcC--------------------------
Confidence 88887642 23568888874311
Q ss_pred cccCCCCCCCCCCcceeccCCceeecccccccCC-cEEecccccCceeeecCccCCcCCCccccCCC
Q psy11602 793 RDSRDSSDGDRGGIFKETDVGKWVHLVCALYIPG-VAFGEVDRLSNVTLFEMPYSRWGAKSCALCPD 858 (1083)
Q Consensus 793 ~~~~~~~~~~~~galK~t~~~~WvHv~CAlw~pe-v~f~~~~~~~pv~~~~ip~~r~~~~~C~iC~~ 858 (1083)
. ..-++.+..+++|.|-.|....-. ..++| ++....|..|..
T Consensus 181 -------~--~NrmlqC~~C~~~fHq~Chqp~i~~~l~~D---------------~~~~w~C~~C~~ 223 (464)
T KOG4323|consen 181 -------A--GNRMLQCDKCRQWYHQACHQPLIKDELAGD---------------PFYEWFCDVCNR 223 (464)
T ss_pred -------c--cceeeeecccccHHHHHhccCCCCHhhccC---------------ccceEeehhhcc
Confidence 0 113778888999999999976421 22232 333457999986
No 106
>PRK00037 hisS histidyl-tRNA synthetase; Reviewed
Probab=97.33 E-value=0.00056 Score=80.94 Aligned_cols=90 Identities=19% Similarity=0.193 Sum_probs=73.2
Q ss_pred CCCCCCCCeeEecCChHHHHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHH
Q psy11602 13 PEKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDES 92 (1083)
Q Consensus 13 ~~dr~~~~~~L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s 92 (1083)
..|+.++.++|+|..-.+++-+++.... +|+|+|+++++||+|....| |.|||.+.+...|..+. ..+
T Consensus 69 ~~d~~g~~l~LRpd~T~~~ar~~~~~~~----~p~r~~~~g~vfR~e~~~~g-------r~ref~Q~g~ei~g~~~-~~~ 136 (412)
T PRK00037 69 FQDKGGRSLTLRPEGTAPVVRAVIEHKL----QPFKLYYIGPMFRYERPQKG-------RYRQFHQFGVEVIGSDS-PLA 136 (412)
T ss_pred EEcCCCCEEEecCCCcHHHHHHHHhCCC----CCeEEEEEcCccccCCCCCC-------cccceEEcCeeeeCCCC-cch
Confidence 3678899999999999999988876422 99999999999999974433 89999999999998776 333
Q ss_pred HHHHHHHHHHHHHHHHHcCCceEEE
Q psy11602 93 WKMLDEMIQNSEEFYADLGIAYRVV 117 (1083)
Q Consensus 93 ~~~~~~~~~~y~~if~~LgLpyrvv 117 (1083)
+ .|++....++|+.||++...+
T Consensus 137 d---~E~i~~~~~~l~~lg~~~~~~ 158 (412)
T PRK00037 137 D---AEVIALAADILKALGLKGLKL 158 (412)
T ss_pred h---HHHHHHHHHHHHHcCCCceee
Confidence 3 347888899999999986555
No 107
>KOG1512|consensus
Probab=97.33 E-value=8.6e-05 Score=80.53 Aligned_cols=48 Identities=19% Similarity=0.273 Sum_probs=44.2
Q ss_pred ccccccccccccccCCCCCCcceecCccCCCccccCCCCCCCCCCCCCcC
Q psy11602 1031 QAWGVLSHKCGLCHLSHDPHTMAKCDTCHLYYHLACLDPPLLRMPKKTKL 1080 (1083)
Q Consensus 1031 ~~~~~~~~~c~~C~~~~~~~~~~~Cd~C~~~yH~~Cl~Ppl~~~P~~~~~ 1080 (1083)
-|+|..|+.|.||+++..++.++.||.||.+||++|+- |..+|.|+|-
T Consensus 308 ~W~C~~C~lC~IC~~P~~E~E~~FCD~CDRG~HT~CVG--L~~lP~G~WI 355 (381)
T KOG1512|consen 308 FWKCSSCELCRICLGPVIESEHLFCDVCDRGPHTLCVG--LQDLPRGEWI 355 (381)
T ss_pred chhhcccHhhhccCCcccchheeccccccCCCCccccc--cccccCccch
Confidence 46779999999999999999999999999999999985 8999999943
No 108
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the CHL00201 syh histidine-tRNA synthetase; Provisional
Probab=97.21 E-value=0.0015 Score=77.90 Aligned_cols=96 Identities=18% Similarity=0.155 Sum_probs=78.9
Q ss_pred CCCCCCCeeEecCChHHHHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHHH
Q psy11602 14 EKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESW 93 (1083)
Q Consensus 14 ~dr~~~~~~L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s~ 93 (1083)
.|+.++.++|+|=--.+++-++...-.+++.+|+|++.++++||.|....| |.|||+..+.=.|..+. ..|+
T Consensus 70 ~d~~g~~l~LRpd~T~~iaR~~~~~~~~~~~~p~R~~y~g~vfR~e~~q~G-------R~Ref~Q~g~EiiG~~~-~~aD 141 (430)
T CHL00201 70 TDRSNRDITLRPEGTAGIVRAFIENKMDYHSNLQRLWYSGPMFRYERPQSG-------RQRQFHQLGIEFIGSID-ARAD 141 (430)
T ss_pred EcCCCCEEEeCCCCcHHHHHHHHHccccccCCCeEEEEEcceecCCCCcCC-------ccceeEEeceEEECCCC-hhhH
Confidence 477788999999999999999877667788999999999999999986555 99999998888887766 3454
Q ss_pred HHHHHHHHHHHHHHHHcCCceEEEEec
Q psy11602 94 KMLDEMIQNSEEFYADLGIAYRVVNIV 120 (1083)
Q Consensus 94 ~~~~~~~~~y~~if~~LgLpyrvv~~~ 120 (1083)
.|++....++|+.|||+=..+.+.
T Consensus 142 ---~Evi~l~~~~l~~lGl~~~~i~l~ 165 (430)
T CHL00201 142 ---TEVIHLAMQIFNELQVKNLILDIN 165 (430)
T ss_pred ---HHHHHHHHHHHHHcCCCceEEEEC
Confidence 568899999999999973334443
No 110
>COG0423 GRS1 Glycyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=97.19 E-value=0.00053 Score=81.10 Aligned_cols=89 Identities=29% Similarity=0.473 Sum_probs=75.6
Q ss_pred cCceeEEEeeeEEEEEEeCCCc-------------------hhHHH----------H-----HHHHHHHHHHHHHHhCCc
Q psy11602 305 RGIFRVHQFEKVEQFVLTSPHD-------------------DESWK----------T-----LDEMIQNSEEFYADLGIA 350 (1083)
Q Consensus 305 rGl~Rvhqf~kvE~f~~~~~~~-------------------~~s~~----------~-----~e~~~~~~e~~~~~L~lp 350 (1083)
.||||+++|+..|+=.|++|+. +...+ + +--.+..+..|+..||||
T Consensus 205 ~gl~R~REF~QaEiE~Fv~P~~k~~p~f~~v~~~~l~l~~~~~q~~~~~~EAv~~g~~~n~~~~y~~~~~~~fl~~lGI~ 284 (558)
T COG0423 205 NGLFRTREFEQAEIEFFVDPEEKEHPKFNEVKDEKLPLLPREAQEEGTEEEAVEEGIVENETLAYFIARTKFFLEDLGID 284 (558)
T ss_pred cceeehhhhhhhheeeEECCCcccCcchhhhhhhhcccccHHHhhhhhhhhhhhcceeechhHHHHHHHHHHHHHHcCCC
Confidence 5999999999999999999986 32222 2 335677888999999998
Q ss_pred ---EEEEeccCCCcchhhhceeeEEEeeCCCCcEEeeecccCccccc
Q psy11602 351 ---YRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLAYQ 394 (1083)
Q Consensus 351 ---yRvv~~~~~dl~~~a~~~~DiE~w~P~~~~y~Ev~S~sn~~d~q 394 (1083)
.|.-.-.+.+|..=|..++|+|+.+|.-| |+|++-++|=+||-
T Consensus 285 ~e~lRfrqh~~~E~AHYa~~twD~E~~~~~~g-WiE~~GiAdRtdYD 330 (558)
T COG0423 285 PEKLRFRQHLPEELAHYSKDTWDAEYKFPFGG-WIELVGIADRTDYD 330 (558)
T ss_pred HHHhhhhhcChHHHhhhhhcceeEEEecCCCc-eEEEEEeecccccc
Confidence 77778889999999999999999999444 99999999999974
No 111
>PF01409 tRNA-synt_2d: tRNA synthetases class II core domain (F); InterPro: IPR002319 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Phenylalanyl-tRNA synthetase (6.1.1.20 from EC) is an alpha2/beta2 tetramer composed of 2 subunits that belongs to class IIc. In eubacteria, a small subunit (pheS gene) can be designated as beta (E. coli) or alpha subunit (nomenclature adopted in InterPro). Reciprocally the large subunit (pheT gene) can be designated as alpha (E. coli) or beta (see IPR004531 from INTERPRO and IPR004532 from INTERPRO). In all other kingdoms the two subunits have equivalent length in eukaryota, and can be identified by specific signatures. The enzyme from Thermus thermophilus has an alpha 2 beta 2 type quaternary structure and is one of the most complicated members of the synthetase family. Identification of phenylalanyl-tRNA synthetase as a member of class II aaRSs was based only on sequence alignment of the small alpha-subunit with other synthetases [].; GO: 0000049 tRNA binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 3TUP_A 3HFV_A 3CMQ_A 3TEG_A 2AKW_B 1B70_B 1B7Y_B 2ALY_B 2IY5_B 2AMC_B ....
Probab=97.03 E-value=0.0074 Score=66.89 Aligned_cols=150 Identities=15% Similarity=0.179 Sum_probs=100.2
Q ss_pred CCeeEecCChHHHHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHHHHHHHH
Q psy11602 19 DDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESWKMLDE 98 (1083)
Q Consensus 19 ~~~~L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s~~~~~~ 98 (1083)
.+..|-.||-.+...-.. ...+..|+|+..++.+||.|.- +.. ...+|.++|...++..- .+..
T Consensus 78 ~~~~vLRThts~~~~~~l---~~~~~~p~kif~iG~VyR~D~~----D~t---h~~~f~Qleg~~~~~~~------~f~~ 141 (247)
T PF01409_consen 78 EDYSVLRTHTSPGQLRTL---NKHRPPPIKIFEIGKVYRRDEI----DAT---HLPEFHQLEGLVVDKNV------TFED 141 (247)
T ss_dssp CSSEEE-SSTHHHHHHHH---TTTSHSSEEEEEEEEEESSSCS----BSS---BESEEEEEEEEEEETTE-------HHH
T ss_pred chhhhhhhhhhHHHHHHH---HHhcCCCeEEEecCceEecCCc----ccc---cCccceeEeeEEEeccc------chhH
Confidence 344555677666544333 6777899999999999999983 222 56799999999887654 6788
Q ss_pred HHHHHHHHHHHc-CCceEEEEeccCCCCcccceeEeEEEEecCCCceeEEEEcCCCchhhhhcccceeccCCCccccccc
Q psy11602 99 MIQNSEEFYADL-GIAYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQSRRLLVRYGQTKQKIYATAC 177 (1083)
Q Consensus 99 ~~~~y~~if~~L-gLpyrvv~~~sgdlg~~as~~~diE~~~P~~~~~~ev~s~s~cgdyqs~rl~i~y~~~~~~~n~tg~ 177 (1083)
+....+.+++.| |....+--.|+---+---+.+.||.......++|+||+-|--.--...+..+| +.+...-+.|+
T Consensus 142 Lk~~l~~l~~~lfG~~~~~r~~ps~fPftePs~e~~i~~~~~~~~~wiEvgg~G~vhP~Vl~~~gi---d~~~~~~A~G~ 218 (247)
T PF01409_consen 142 LKGTLEELLKELFGIDVKVRFRPSYFPFTEPSREADIYCGVCKGGGWIEVGGCGMVHPEVLENWGI---DEEYPGFAFGL 218 (247)
T ss_dssp HHHHHHHHHHHHHTTTEEEEEEECEETTEEEEEEEEEEEECTTTTCEEEEEEEEEE-HHHHHHTT-----TTSEEEEEEE
T ss_pred HHHHHHHHHHHHhhcccceEeecCCCCcccCCeEEEEEEeeccCCCceEEeecccccHhhhhccCc---CccceEEEecC
Confidence 999999999999 98744433444333444455556655557788999999876554444555555 22223677899
Q ss_pred cchhheehee
Q psy11602 178 ATTRVICAIL 187 (1083)
Q Consensus 178 a~~Rli~All 187 (1083)
++.|++-...
T Consensus 219 GleRlam~~~ 228 (247)
T PF01409_consen 219 GLERLAMLKY 228 (247)
T ss_dssp EHHHHHHHHH
T ss_pred CHHHHHHHHc
Confidence 9999865443
No 112
>PLN02853 Probable phenylalanyl-tRNA synthetase alpha chain
Probab=96.89 E-value=0.0081 Score=71.81 Aligned_cols=156 Identities=17% Similarity=0.202 Sum_probs=107.3
Q ss_pred CCCCCCCeeEecCChHHHHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHHH
Q psy11602 14 EKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESW 93 (1083)
Q Consensus 14 ~dr~~~~~~L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s~ 93 (1083)
=|.......|--||-+++..-+.........-|++++.++++||+|+-.+- ...||..+|.+.++..-
T Consensus 310 W~~~~a~~~vLRTHTTa~s~r~L~~~~~~~~~p~k~fsigrVfR~d~iDat-------H~~eFhQ~EG~vvd~~~----- 377 (492)
T PLN02853 310 WKREEANKNLLRTHTTAVSSRMLYKLAQKGFKPKRYFSIDRVFRNEAVDRT-------HLAEFHQVEGLVCDRGL----- 377 (492)
T ss_pred cccchhcccccCCCCCHHHHHHHHHhhccCCCCcEEEeccceecCCCCCcc-------cCccceeEEEEEEeCCC-----
Confidence 344444557778999888775554433223469999999999999983221 67899999999998765
Q ss_pred HHHHHHHHHHHHHHHHcCCceEEEEeccCCCCcccceeEeEEEEecCCCceeEEEEcCCCchhhhhcccceeccCCCccc
Q psy11602 94 KMLDEMIQNSEEFYADLGIAYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQSRRLLVRYGQTKQKIY 173 (1083)
Q Consensus 94 ~~~~~~~~~y~~if~~LgLpyrvv~~~sgdlg~~as~~~diE~~~P~~~~~~ev~s~s~cgdyqs~rl~i~y~~~~~~~n 173 (1083)
.+..++...+.||.+||. -.+--.|+- ++--.-.+.+++|.|..++|+||+-|--.-..--+.++| ..+..+-
T Consensus 378 -t~~~L~g~l~~f~~~lg~-~~~RfrP~y--fPfTEPS~Ei~v~~~~~gkWiEi~g~Gm~rpevl~~~Gi---~~~~~~~ 450 (492)
T PLN02853 378 -TLGDLIGVLEDFFSRLGM-TKLRFKPAY--NPYTEPSMEIFSYHEGLKKWVEVGNSGMFRPEMLLPMGL---PEDVNVI 450 (492)
T ss_pred -CHHHHHHHHHHHHHHcCC-ceEEEecCC--CCCCCCeEEEEEEecCCCCEEEEecCcCcCHHHHHhCCC---CCcceEE
Confidence 667788899999999987 334444543 333333455566889888899998876655555555555 2222267
Q ss_pred cccccchhheeheec
Q psy11602 174 ATACATTRVICAILE 188 (1083)
Q Consensus 174 ~tg~a~~Rli~Alle 188 (1083)
+.|+++.|+.-....
T Consensus 451 A~GlGleRlaMl~yg 465 (492)
T PLN02853 451 AWGLSLERPTMILYG 465 (492)
T ss_pred EEEecHHHHHHHHhC
Confidence 889999998654433
No 113
>COG0124 HisS Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=96.89 E-value=0.0023 Score=75.80 Aligned_cols=98 Identities=19% Similarity=0.166 Sum_probs=76.9
Q ss_pred CCCCCCCCCCCCeeEecCChHHHHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCC
Q psy11602 9 GDSAPEKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPH 88 (1083)
Q Consensus 9 ~~~~~~dr~~~~~~L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~ 88 (1083)
.--+.+|+.++.+.|+|=--.|++-++........ +|+|+|.++++||+|....| |.|||...+.=.+-.+.
T Consensus 65 emY~F~Dkggr~laLRpe~Tapv~R~~~en~~~~~-~p~k~yy~g~vfRyErPQ~G-------R~RqF~Q~g~E~iG~~~ 136 (429)
T COG0124 65 EMYTFKDKGGRSLALRPELTAPVARAVAENKLDLP-KPLKLYYFGPVFRYERPQKG-------RYRQFYQFGVEVIGSDS 136 (429)
T ss_pred ceEEEEeCCCCEEEecccCcHHHHHHHHhcccccc-CCeeEEEecceecCCCCCCC-------CceeeEEcCeEEeCCCC
Confidence 33467899999999999999999999987766555 89999999999999998877 88999876554444433
Q ss_pred chHHHHHHHHHHHHHHHHHHHcCCceEEEE
Q psy11602 89 DDESWKMLDEMIQNSEEFYADLGIAYRVVN 118 (1083)
Q Consensus 89 ~e~s~~~~~~~~~~y~~if~~LgLpyrvv~ 118 (1083)
..++ .|++....++|+.|||.-..++
T Consensus 137 -~~~D---AEvi~l~~~~l~~lGi~~~~l~ 162 (429)
T COG0124 137 -PDAD---AEVIALAVEILEALGIGGFTLE 162 (429)
T ss_pred -cccC---HHHHHHHHHHHHHcCCCcEEEE
Confidence 2222 4688889999999999843333
No 114
>PRK12420 histidyl-tRNA synthetase; Provisional
Probab=96.85 E-value=0.0025 Score=75.88 Aligned_cols=91 Identities=16% Similarity=0.230 Sum_probs=71.9
Q ss_pred CCCCCCCCeeEecCChHHHHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHH
Q psy11602 13 PEKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDES 92 (1083)
Q Consensus 13 ~~dr~~~~~~L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s 92 (1083)
+.|+.++.++|+|-.-.+++-+++.. ....+|+|+|.++++||.|....| |.|||.....=.|..+. ..+
T Consensus 68 ~~D~~g~~l~LRpD~T~~iaR~va~~--~~~~~p~r~~y~g~vfR~~~~~~g-------r~rE~~Q~g~EiiG~~~-~~a 137 (423)
T PRK12420 68 LTDQGKRDLALRYDLTIPFAKVVAMN--PNIRLPFKRYEIGKVFRDGPIKQG-------RFREFIQCDVDIVGVES-VMA 137 (423)
T ss_pred EecCCCceecccccccHHHHHHHHhC--cCCCCCeeEEEEcceECCCCCCCC-------ccceeEECCeeeECCCC-Ccc
Confidence 56888999999999999999998865 234789999999999999875444 78999877666665544 233
Q ss_pred HHHHHHHHHHHHHHHHHcCCceEE
Q psy11602 93 WKMLDEMIQNSEEFYADLGIAYRV 116 (1083)
Q Consensus 93 ~~~~~~~~~~y~~if~~LgLpyrv 116 (1083)
+ .|++....++|+.||+.|.+
T Consensus 138 d---aEvi~la~~~l~~lg~~~~i 158 (423)
T PRK12420 138 E---AELMSMAFELFRRLNLEVTI 158 (423)
T ss_pred c---HHHHHHHHHHHHHCCCCEEE
Confidence 3 67888888999999997643
No 115
>PLN02530 histidine-tRNA ligase
Probab=96.76 E-value=0.0038 Score=75.75 Aligned_cols=89 Identities=18% Similarity=0.268 Sum_probs=71.0
Q ss_pred CCCCCCCCeeEecCChHHHHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHH
Q psy11602 13 PEKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDES 92 (1083)
Q Consensus 13 ~~dr~~~~~~L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s 92 (1083)
..|+.++.++|+|---.+++-+++....+. .+|+|+|.++++||+|....| |.|||.....=.|..+. ..|
T Consensus 132 f~D~~g~~l~LRpD~T~~iaR~~~~~~~~~-~~P~r~~y~g~vfR~e~~q~g-------r~REf~Q~giEiiG~~~-~~a 202 (487)
T PLN02530 132 FEDKGGRRVALRPELTPSLARLVLQKGKSL-SLPLKWFAIGQCWRYERMTRG-------RRREHYQWNMDIIGVPG-VEA 202 (487)
T ss_pred EECCCCCEEecCCCCcHHHHHHHHhccccc-CCCeEEEEEcCEEcCcCCCCC-------CccceEEcCeeEeCCCC-cch
Confidence 468899999999999999999888754443 699999999999999986555 78999887666666555 233
Q ss_pred HHHHHHHHHHHHHHHHHcCCc
Q psy11602 93 WKMLDEMIQNSEEFYADLGIA 113 (1083)
Q Consensus 93 ~~~~~~~~~~y~~if~~LgLp 113 (1083)
+ .|++....++|+.|||+
T Consensus 203 D---aEvi~l~~~~l~~lgl~ 220 (487)
T PLN02530 203 E---AELLAAIVTFFKRVGIT 220 (487)
T ss_pred h---HHHHHHHHHHHHHcCCC
Confidence 3 46778888899999996
No 116
>KOG4299|consensus
Probab=96.63 E-value=0.00075 Score=80.93 Aligned_cols=45 Identities=27% Similarity=0.571 Sum_probs=40.4
Q ss_pred ccccccccCCCCCCcceecCccCCCccccCCCCC--CCCCCCCCcCC
Q psy11602 1037 SHKCGLCHLSHDPHTMAKCDTCHLYYHLACLDPP--LLRMPKKTKLM 1081 (1083)
Q Consensus 1037 ~~~c~~C~~~~~~~~~~~Cd~C~~~yH~~Cl~Pp--l~~~P~~~~~~ 1081 (1083)
...|..|.+.+.-..+++||+|.+.||+.||+|| .+.+|.+.|+|
T Consensus 253 ~~fCsaCn~~~~F~~~i~CD~Cp~sFH~~CLePPl~~eniP~g~W~C 299 (613)
T KOG4299|consen 253 EDFCSACNGSGLFNDIICCDGCPRSFHQTCLEPPLEPENIPPGSWFC 299 (613)
T ss_pred HHHHHHhCCccccccceeecCCchHHHHhhcCCCCCcccCCCCcccc
Confidence 3479999999988888999999999999999999 78999998654
No 117
>KOG0825|consensus
Probab=96.60 E-value=0.00096 Score=80.73 Aligned_cols=54 Identities=24% Similarity=0.587 Sum_probs=44.5
Q ss_pred CCCCccccccCCCCCCCCCcEEEcccCCcc-cccccccccccCCCcccCCCCCCCCcccccccCC
Q psy11602 688 FSKILVCCVCLGERSDDVNEIVECDSCGVT-VHEGCYGVQDTASISSTVSSCSTEPWFCESCRAG 751 (1083)
Q Consensus 688 ~~~~~~C~VC~~~~~~~~n~iv~Cd~C~i~-VH~~CYGv~~~~~~~~~~~~~~~~~W~Cd~C~~~ 751 (1083)
..+...|.||... +..+-||.||.|+.+ ||.+|.-+...+. |-+.|+|+-|...
T Consensus 212 ~~E~~~C~IC~~~--DpEdVLLLCDsCN~~~YH~YCLDPdl~ei--------P~~eWYC~NC~dL 266 (1134)
T KOG0825|consen 212 SQEEVKCDICTVH--DPEDVLLLCDSCNKVYYHVYCLDPDLSES--------PVNEWYCTNCSLL 266 (1134)
T ss_pred ccccccceeeccC--ChHHhheeecccccceeeccccCcccccc--------cccceecCcchhh
Confidence 3566799999954 557899999999999 9999998876433 7899999999753
No 118
>TIGR02367 PylS pyrrolysyl-tRNA synthetase. PylS is the archaeal enzyme responsible for charging the pyrrolysine tRNA, PylT, by ligating a free molecule of pyrrolysine. Pyrrolysine is encoded at an in-frame UAG (amber) at least in several corrinoid-dependent methyltransferases of the archaeal genera Methanosarcina and Methanococcoides, such as trimethylamine methyltransferase.
Probab=96.58 E-value=0.0069 Score=71.36 Aligned_cols=87 Identities=15% Similarity=0.250 Sum_probs=69.1
Q ss_pred CCCeeEecCChHHHHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHHHHHHH
Q psy11602 18 LDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESWKMLD 97 (1083)
Q Consensus 18 ~~~~~L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s~~~~~ 97 (1083)
++.++|+|+---+|+.+++.. .....+|+|++.++.+||.|....+ |.+||.+.+...+.... .|.
T Consensus 291 ee~lvLRPdLTPsLaR~La~N-~~~l~~PqKIFEIGkVFR~E~~~~t-------hlREF~QL~~eIaG~~a------tfa 356 (453)
T TIGR02367 291 DKNFCLRPMLAPNLYNYLRKL-DRALPDPIKIFEIGPCYRKESDGKE-------HLEEFTMLNFCQMGSGC------TRE 356 (453)
T ss_pred cCceEecccCHHHHHHHHHHh-hhhccCCeeEEEEcCeEecCCCCCC-------CcCeEEEEEEEEECCCC------CHH
Confidence 457899999877777766542 1234789999999999999986544 79999999999887665 456
Q ss_pred HHHHHHHHHHHHcCCceEEEE
Q psy11602 98 EMIQNSEEFYADLGIAYRVVN 118 (1083)
Q Consensus 98 ~~~~~y~~if~~LgLpyrvv~ 118 (1083)
++......+|+.||+.|.+.+
T Consensus 357 DlealL~e~Lr~LGIdfeitE 377 (453)
T TIGR02367 357 NLEAIIKDFLDHLEIDFEIVG 377 (453)
T ss_pred HHHHHHHHHHHHCCCceEEeC
Confidence 677788999999999998863
No 119
>TIGR00470 sepS O-phosphoseryl-tRNA(Cys) synthetase. This family of archaeal proteins resembles known phenylalanyl-tRNA synthetase alpha chains. Recently, it was shown to act in a proposed pathway of tRNA(Cys) indirect aminoacylation, resulting in Cys biosynthesis from O-phosphoserine, in certain archaea. It charges tRNA(Cys) with O-phosphoserine. The pscS gene product converts the phosphoserine to Cys.
Probab=96.27 E-value=0.031 Score=66.15 Aligned_cols=143 Identities=13% Similarity=0.198 Sum_probs=96.7
Q ss_pred eEecCChHHHHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHHHHHHHHHHH
Q psy11602 22 YLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESWKMLDEMIQ 101 (1083)
Q Consensus 22 ~L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s~~~~~~~~~ 101 (1083)
.|.-||=.+..-.....+.....+|+|++.++.|||.|.. -+. -+.++|..++...++..- .|.++..
T Consensus 183 ~lLRTHTTpgqirtL~~L~~~~~~PiRIFsIGRVfRrD~~---~Da---THl~eFhQlEGLVVdedV------Sf~DLKg 250 (533)
T TIGR00470 183 LTLRSHMTSGWFITLSSIIDKRKLPLKLFSIDRCFRREQR---EDR---SHLMTYHSASCVVVDEEV------SVDDGKA 250 (533)
T ss_pred cccccCChhHHHHHHHHHhhcCCCCeEEEeeeeEEecCCC---CCC---ccCceeeeEEEEEECCCC------CHHHHHH
Confidence 3455666664434444334466899999999999999952 111 157899999988888776 7899999
Q ss_pred HHHHHHHHcCCceEEEEeccC----CCCcccceeEeEEEEecCCCceeEEEEcCCCchhhhhcccceeccCCCccccccc
Q psy11602 102 NSEEFYADLGIAYRVVNIVSG----ALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQSRRLLVRYGQTKQKIYATAC 177 (1083)
Q Consensus 102 ~y~~if~~LgLpyrvv~~~sg----dlg~~as~~~diE~~~P~~~~~~ev~s~s~cgdyqs~rl~i~y~~~~~~~n~tg~ 177 (1083)
..+.|+++||.. .+--.|+. --++.-. ..|.++.|..++|.||+.|.-.--..=+.++|.+. +-+.|+
T Consensus 251 vLe~LLr~LG~~-~vRFRPsekrskyYFPFTE--aEVdV~~~k~~gWiEIgG~GmVhPeVL~~~GId~P-----V~AFGI 322 (533)
T TIGR00470 251 VAEGLLAQFGFT-KFRFRPDEKKSKYYIPETQ--TEVYAYHPKLGEWIEVATFGVYSPIALAKYNIDVP-----VMNLGL 322 (533)
T ss_pred HHHHHHHHhCCc-eEEeccCcCCCCCcCCCce--EEEEEEccCCCceEEEEeccccCHHHHHHcCCCCc-----eEEEEe
Confidence 999999999963 12222331 1333222 56667778788899999877665444455555321 457899
Q ss_pred cchhhee
Q psy11602 178 ATTRVIC 184 (1083)
Q Consensus 178 a~~Rli~ 184 (1083)
++.|+.-
T Consensus 323 GVERlAM 329 (533)
T TIGR00470 323 GVERLAM 329 (533)
T ss_pred cHHHHHH
Confidence 9999854
No 120
>KOG1637|consensus
Probab=96.16 E-value=0.015 Score=67.78 Aligned_cols=244 Identities=18% Similarity=0.251 Sum_probs=144.8
Q ss_pred eeEecccccccccccccCCCCccccccCcccchHHHHHHhhhhcccchhhhhhhhhccccccccccCceEeeecc-----
Q psy11602 195 GVRIPDCLRKFVPAVYLNEAGEIPFVKTAPIDEEETKKQKKQKEGMKKKLTMSLFSQVGSHGRDTRGIFRVHQFE----- 269 (1083)
Q Consensus 195 Gi~lP~~L~p~~~~~~~~~~G~~pv~~P~~i~~d~~~~~~~k~~~~k~~~~~~~~~e~g~h~~dl~~i~Rv~qfd----- 269 (1083)
|.+|=..|..|+-..+. ..||.+|+.|-+.+.+.-++- ++.-.+.+ +||++....
T Consensus 191 G~~iyN~Lv~fir~ey~-~rGf~EVitPniy~~~LWe~S----------------GHwqnY~e---nmF~~e~eke~~~L 250 (560)
T KOG1637|consen 191 GTRIYNTLVDFIRAEYR-KRGFTEVITPNIYNKKLWETS----------------GHWQNYSE---NMFKFEVEKEEFAL 250 (560)
T ss_pred cchHHHHHHHHHHHHHH-hcCCceecCcchhhhhhhhhc----------------cchhhhhh---hceeeeechhhhcc
Confidence 34444677778777775 789999999999994433322 23333333 455544311
Q ss_pred ---ceEEEEeeCCCCCcchhhhh-hhhcccccccc--cccCcCceeEEEeeeEEEEEEeCCCchhHHHHHHHHHHHHHHH
Q psy11602 270 ---KVEQFVLTSPHDDESWKMLD-EMIQNSEEFYA--DLDTRGIFRVHQFEKVEQFVLTSPHDDESWKTLDEMIQNSEEF 343 (1083)
Q Consensus 270 ---~~~~~~~~~~~~~~s~~~~~-~~~~~~~~~~~--~~~trGl~Rvhqf~kvE~f~~~~~~~~~s~~~~e~~~~~~e~~ 343 (1083)
.--...+.--|.+-||+.|| ++-...-.-|. .-...||-||+.|..=---.+|+|+ +-+++.+-.+.-.+.+
T Consensus 251 KPMNCPgHcLmf~~r~rS~reLPlR~aDFg~LHRnE~SGaLsGLTRvRrFqQDDaHIFCt~~--Qi~~Eik~~l~fl~~v 328 (560)
T KOG1637|consen 251 KPMNCPGHCLMFAHRDRSYRELPLRFADFGVLHRNEASGALSGLTRVRRFQQDDAHIFCTPD--QVKEEIKGCLDFLDYV 328 (560)
T ss_pred CccCCCccccccccCCccHhhCCccccCcceeeeccccccccccceeeeecccCceEEecCc--cHHHHHHHHHHHHHHH
Confidence 12233444556677888888 53332222222 2334799999999887778888884 5677777777777888
Q ss_pred HHHhCCcEEEEecc----------------------------CCCcch--hhhc--eeeEEEeeCCCCcEEeeecccCcc
Q psy11602 344 YADLGIAYRVVNIV----------------------------SGALNH--AAAK--KLDLEAWFPGSGAFRELVSCSNCL 391 (1083)
Q Consensus 344 ~~~L~lpyRvv~~~----------------------------~~dl~~--~a~~--~~DiE~w~P~~~~y~Ev~S~sn~~ 391 (1083)
|.-+|.-|.+..-- ++.|++ +|.+ |+||=+ .-..+++..+.|+ -.
T Consensus 329 Y~~fgf~f~l~lSTRPe~~lG~l~~Wd~AE~~L~~al~e~g~pw~lN~GDGAFYGPKIDi~l-~Dal~r~hQcaTI--QL 405 (560)
T KOG1637|consen 329 YGVFGFTFKLNLSTRPEKFLGDLETWDEAEFKLEEALNESGEPWVLNPGDGAFYGPKIDITL-DDALGRKHQCATI--QL 405 (560)
T ss_pred HHhccccceeEeccChHHhccCHHHHHHHHHHHHHHHHHhCCCceecCCCcccccceeeeEh-hhhcCcccceeee--ee
Confidence 88888777765432 111111 2222 344433 1223566666666 48
Q ss_pred cccc-cccceEEecccCCCCceeeEEeecccccchhHHHHHHHhhccCCCceecCccccccCCCcccCCCcccCCCCCCC
Q psy11602 392 AYQS-RRLLVRYGQTKKMNEKIEFVHMLNATACATTRVICAILETHQTETGVRIPDCLRKFVPAVYVNEAGEIPFVKTAP 470 (1083)
Q Consensus 392 d~qa-rrl~iry~~~~~~~~~~~~~htln~t~~a~~R~i~ailEn~q~~~Gi~iP~~L~py~~~~~~~~~~~~~~~~~~p 470 (1083)
|||. .|.++.|.+.++.-...--+|- +..=++.|.++.|+|+|.. ++|=.|.|.... .|| |..+|
T Consensus 406 DFqLP~rFdL~y~~~~g~~erPVmIHR--AIlGSvERmiaiL~E~~~g----kwPFWlSPRq~~-------vIp-Vse~~ 471 (560)
T KOG1637|consen 406 DFQLPIRFDLEYETEDGDLERPVMIHR--AILGSVERMIAILLESYGG----KWPFWLSPRQAV-------VIP-VSEGP 471 (560)
T ss_pred cccChhhcCceeecccccccchhhHHH--HHhhhHHHHHHHHHHHhCC----CCCeeeccceEE-------EEE-CCCcc
Confidence 9997 5888889875321111122331 2333689999999998863 677777777542 233 34566
Q ss_pred CChhhHH
Q psy11602 471 IDEEETK 477 (1083)
Q Consensus 471 ~D~e~~~ 477 (1083)
-+|-.+.
T Consensus 472 ~~ya~~V 478 (560)
T KOG1637|consen 472 LDYATSV 478 (560)
T ss_pred hhHHHHH
Confidence 6665443
No 121
>PRK04172 pheS phenylalanyl-tRNA synthetase subunit alpha; Provisional
Probab=96.15 E-value=0.027 Score=68.46 Aligned_cols=147 Identities=14% Similarity=0.167 Sum_probs=97.9
Q ss_pred CCCCCCCCeeEecCChHHHHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHH
Q psy11602 13 PEKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDES 92 (1083)
Q Consensus 13 ~~dr~~~~~~L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s 92 (1083)
.+|..++.++|+|--=.+++.++.. ....|+++|.++++||.|....+ |.+||...+...+..+-
T Consensus 321 ~~~~~~~~~~LR~~~T~~~~r~l~~----~~~~p~rlFeiGrVFR~e~~d~~-------~l~Ef~ql~~~i~G~~~---- 385 (489)
T PRK04172 321 WDEDIAKRLVLRTHTTALSARYLAS----RPEPPQKYFSIGRVFRPDTIDAT-------HLPEFYQLEGIVMGEDV---- 385 (489)
T ss_pred cchhhhhccccccCChHHHHHHHHh----cCCCCeEEEEecceEcCCCCCcc-------cCCchheEEEEEEeCCC----
Confidence 3455667889998777777777665 44789999999999999874322 34799999988887643
Q ss_pred HHHHHHHHHHHHHHHHHcCCc-eEEEEeccCCCCcccceeEeEEEEecCCCceeEEEEcCCCchhhhhcccceeccCCCc
Q psy11602 93 WKMLDEMIQNSEEFYADLGIA-YRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQSRRLLVRYGQTKQK 171 (1083)
Q Consensus 93 ~~~~~~~~~~y~~if~~LgLp-yrvv~~~sgdlg~~as~~~diE~~~P~~~~~~ev~s~s~cgdyqs~rl~i~y~~~~~~ 171 (1083)
.|.+++...+.+|+.||++ ++.. ++..-+. .....++++.++. +|.+|+.+...---..++++|.. .
T Consensus 386 --~f~elkg~l~~ll~~lGi~~~~~~--~~~~p~~--~P~~~~~i~~~g~-~w~eiG~~G~l~Pevl~~~gi~~-----~ 453 (489)
T PRK04172 386 --SFRDLLGILKEFYKRLGFEEVKFR--PAYFPFT--EPSVEVEVYHEGL-GWVELGGAGIFRPEVLEPLGIDV-----P 453 (489)
T ss_pred --CHHHHHHHHHHHHHHhCCceEEEc--CCcCCCC--CCeEEEEEEECCC-CeEEEEeccccCHHHHHHCCCCC-----c
Confidence 3688999999999999995 4432 2211111 2223445555543 48889876655555566666632 1
Q ss_pred cccccccchhheehe
Q psy11602 172 IYATACATTRVICAI 186 (1083)
Q Consensus 172 ~n~tg~a~~Rli~Al 186 (1083)
+...++.+.|++...
T Consensus 454 v~~~el~le~l~m~~ 468 (489)
T PRK04172 454 VLAWGLGIERLAMLR 468 (489)
T ss_pred eEEEEEcHHHHHHHH
Confidence 556667777765433
No 122
>COG0016 PheS Phenylalanyl-tRNA synthetase alpha subunit [Translation, ribosomal structure and biogenesis]
Probab=95.76 E-value=0.1 Score=59.94 Aligned_cols=142 Identities=16% Similarity=0.219 Sum_probs=94.9
Q ss_pred eeEecCChHHHHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHHHHHHHHHH
Q psy11602 21 KYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESWKMLDEMI 100 (1083)
Q Consensus 21 ~~L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s~~~~~~~~ 100 (1083)
..|.-||-.++..-+...-... |+|+..++.+||.|.-. --...||..+|...++..- .+..+.
T Consensus 170 ~~lLRTHTs~vq~R~l~~~~~~---P~k~~~~grvyR~D~~D-------aTHs~~FhQiEGlvvd~~~------s~~~Lk 233 (335)
T COG0016 170 KLLLRTHTSPVQARTLAENAKI---PIKIFSPGRVYRNDTVD-------ATHSPEFHQIEGLVVDKNI------SFADLK 233 (335)
T ss_pred ceeecccCcHhhHHHHHhCCCC---CceEecccceecCCCCC-------cccchheeeeEEEEEeCCc------cHHHHH
Confidence 4566688888877665543333 99999999999999522 2268899999999998887 466777
Q ss_pred HHHHHHHHHcC-CceEEEEeccCCCCcccceeEeEEEEecCCCceeEEEEcCCCchhhhhcccceeccCCCccc--cccc
Q psy11602 101 QNSEEFYADLG-IAYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQSRRLLVRYGQTKQKIY--ATAC 177 (1083)
Q Consensus 101 ~~y~~if~~Lg-Lpyrvv~~~sgdlg~~as~~~diE~~~P~~~~~~ev~s~s~cgdyqs~rl~i~y~~~~~~~n--~tg~ 177 (1083)
...+.|++.++ ....+--.|+- ++--.-.+.+++|.+..++|+||+-|--.-..--++++| +.+. +. +.|+
T Consensus 234 g~L~~f~~~~fg~~~~vRfrpsy--FPFTEPS~Evdv~~~~~~~WlEi~G~Gmv~P~VL~~~G~---~~~~-~~GfAfGl 307 (335)
T COG0016 234 GTLEEFAKKFFGEDVKVRFRPSY--FPFTEPSAEVDVYCPGCGGWLEILGCGMVHPNVLEAVGI---DPEE-YSGFAFGL 307 (335)
T ss_pred HHHHHHHHHhcCCCcceEeecCC--CCCCCCeEEEEEEEcCCCCEEEEecccccCHHHHHhcCC---CCCc-ceEEEEee
Confidence 77777777666 22222222322 333334567788999889999998866544333444443 1211 44 7799
Q ss_pred cchhhee
Q psy11602 178 ATTRVIC 184 (1083)
Q Consensus 178 a~~Rli~ 184 (1083)
++.|+.-
T Consensus 308 GlERlAM 314 (335)
T COG0016 308 GLERLAM 314 (335)
T ss_pred cHHHHHH
Confidence 9999854
No 123
>KOG0955|consensus
Probab=95.70 E-value=0.0083 Score=77.14 Aligned_cols=62 Identities=29% Similarity=0.666 Sum_probs=53.8
Q ss_pred eeccccCCCCCCCCceeeccCCCCcccccchhhhHHHHHHhhhhcccceecccccCCCCCccccccCCC
Q psy11602 632 VCCVCLGERSDDVNEIVECDSCGVTVHEVKIQQEFLAIKFLIRYLLFWFQLEDFSKFSKILVCCVCLGE 700 (1083)
Q Consensus 632 ~c~~c~g~~~~~~~~l~~C~~Cg~~~h~~~~~~~~~~i~~~~~~~~~W~~~~d~~~~~~~~~C~VC~~~ 700 (1083)
+|+||++....|-+.|++|+.|+..+|..|- .+++..-. .|.|-.|.+.+.+...|.-|-..
T Consensus 221 ~C~iC~~~~~~n~n~ivfCD~Cnl~VHq~Cy-----gi~~ipeg--~WlCr~Cl~s~~~~v~c~~cp~~ 282 (1051)
T KOG0955|consen 221 VCCICLDGECQNSNVIVFCDGCNLAVHQECY-----GIPFIPEG--QWLCRRCLQSPQRPVRCLLCPSK 282 (1051)
T ss_pred cceeecccccCCCceEEEcCCCcchhhhhcc-----CCCCCCCC--cEeehhhccCcCcccceEeccCC
Confidence 8999999999999999999999999997776 47775555 99999998888888889998643
No 124
>KOG1245|consensus
Probab=95.59 E-value=0.0029 Score=84.13 Aligned_cols=49 Identities=27% Similarity=0.562 Sum_probs=44.8
Q ss_pred ccccccccccCCCCCCcceecCccCCCccccCCCCCCCCCCCCCcCCCC
Q psy11602 1035 VLSHKCGLCHLSHDPHTMAKCDTCHLYYHLACLDPPLLRMPKKTKLMGW 1083 (1083)
Q Consensus 1035 ~~~~~c~~C~~~~~~~~~~~Cd~C~~~yH~~Cl~Ppl~~~P~~~~~~~W 1083 (1083)
...-.|.+|+..+.++.|++||.|+.+||++|+.|-|.++|.+.|.|-|
T Consensus 1106 ~~~~~c~~cr~k~~~~~m~lc~~c~~~~h~~C~rp~~~~~~~~dW~C~~ 1154 (1404)
T KOG1245|consen 1106 AVNALCKVCRRKKQDEKMLLCDECLSGFHLFCLRPALSSVPPGDWMCPS 1154 (1404)
T ss_pred cchhhhhhhhhcccchhhhhhHhhhhhHHHHhhhhhhccCCcCCccCCc
Confidence 3556799999999999999999999999999999999999999977754
No 125
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=95.58 E-value=0.0048 Score=59.64 Aligned_cols=57 Identities=33% Similarity=0.567 Sum_probs=44.3
Q ss_pred CcccccccccccCCCCCcceeecccccccccccCCCccceeeecccccccccccccccccccCCCCCCcccccc
Q psy11602 544 EQPICAVHRDSWLPEASLPIRYLGVSTCFRQECDAGMCRTYFHVTCAQREGLLSEATSEEVDQADPFYAHCRLH 617 (1083)
Q Consensus 544 ~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~c~~~~H~~ca~~~g~~~e~~~~~~~~~~p~~~~c~~h 617 (1083)
-+..|.+|++. .|+.+ .|..++|..+||.+||..+|+..+.... +..+++..+|+.|
T Consensus 54 ~~~~C~iC~~~----~G~~i-----------~C~~~~C~~~fH~~CA~~~g~~~~~~~~--~~~~~~~~~C~~H 110 (110)
T PF13832_consen 54 FKLKCSICGKS----GGACI-----------KCSHPGCSTAFHPTCARKAGLYFEIENE--EDNVQFIAYCPKH 110 (110)
T ss_pred cCCcCcCCCCC----CceeE-----------EcCCCCCCcCCCHHHHHHCCCeEEeeec--CCCceEEEECCCC
Confidence 35689999965 56666 8999999999999999999976554442 3367788888876
No 126
>PF13771 zf-HC5HC2H: PHD-like zinc-binding domain
Probab=95.27 E-value=0.0087 Score=55.64 Aligned_cols=58 Identities=24% Similarity=0.536 Sum_probs=43.8
Q ss_pred ccCCcccccccccccCCCC-CcceeecccccccccccCCCccceeeecccccccccccccccccccCCCCCCccccccc
Q psy11602 541 ATSEQPICAVHRDSWLPEA-SLPIRYLGVSTCFRQECDAGMCRTYFHVTCAQREGLLSEATSEEVDQADPFYAHCRLHA 618 (1083)
Q Consensus 541 ~~~~~~~c~~~~~~~~~~~-~~~~~~~~~~~~~~~~c~~~~c~~~~H~~ca~~~g~~~e~~~~~~~~~~p~~~~c~~h~ 618 (1083)
...-+..|.+|+ ++ |++| +|....|+.+||++||..+|.+.+.. +....+..+|+.|.
T Consensus 32 ~~~~~~~C~~C~-----~~~Ga~i-----------~C~~~~C~~~fH~~CA~~~~~~~~~~----~~~~~~~~~C~~H~ 90 (90)
T PF13771_consen 32 KRRRKLKCSICK-----KKGGACI-----------GCSHPGCSRSFHVPCARKAGCFIEFD----EDNGKFRIFCPKHS 90 (90)
T ss_pred HHHhCCCCcCCC-----CCCCeEE-----------EEeCCCCCcEEChHHHccCCeEEEEc----cCCCceEEEChhcC
Confidence 344456899999 66 8888 99999999999999999999643332 13335777888874
No 127
>KOG2298|consensus
Probab=95.21 E-value=0.0047 Score=71.98 Aligned_cols=77 Identities=21% Similarity=0.298 Sum_probs=58.7
Q ss_pred CeeEec-CChHHHHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHHHHHHHH
Q psy11602 20 DKYLIA-TSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESWKMLDE 98 (1083)
Q Consensus 20 ~~~L~p-TsE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s~~~~~~ 98 (1083)
.-||+| |+--.+.++=+-..+.-..||.--+||+..||+|+ .|+.||+|+|||+|.|.-+|..|. +.+-.-|.+
T Consensus 182 kgyLRPETAQG~FlNFkrlle~N~~KlPFA~AqiG~~fRNEI----SpRsGLlRvrEF~maEIEHFvdP~-~K~h~kF~~ 256 (599)
T KOG2298|consen 182 KGYLRPETAQGQFLNFKRLLEFNQGKLPFASAQIGKSFRNEI----SPRSGLLRVREFTMAEIEHFVDPL-LKSHPKFSL 256 (599)
T ss_pred ccccCccccccccccHHHHHHhcCCCCcchHHHhchHhhhcc----CcccCceeEEEeehHHhhccCCCC-CCCChhhhh
Confidence 347777 34444455544455778899999999999999999 666799999999999999999998 455555554
Q ss_pred HHH
Q psy11602 99 MIQ 101 (1083)
Q Consensus 99 ~~~ 101 (1083)
+..
T Consensus 257 V~~ 259 (599)
T KOG2298|consen 257 VAA 259 (599)
T ss_pred hhh
Confidence 443
No 128
>TIGR00443 hisZ_biosyn_reg ATP phosphoribosyltransferase, regulatory subunit. Apparant second copies of histidyl-tRNA synthetase, found in Bacillus subtilis, Synechocystis sp., Aquifex aeolicus, and others, are in fact a regulatory subunit of ATP phosphoribosyltransferase, and usually encoded by a gene adjacent to that encoding the catalytic subunit.
Probab=95.11 E-value=0.076 Score=60.86 Aligned_cols=89 Identities=17% Similarity=0.104 Sum_probs=70.4
Q ss_pred CCCCCCCCeeEecCChHHHHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHH
Q psy11602 13 PEKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDES 92 (1083)
Q Consensus 13 ~~dr~~~~~~L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s 92 (1083)
..|+.++.++|+|=--.+++-+++.... ..++|+|++.++++||.|.... -|.|||.....=.|..+. ..+
T Consensus 55 ~~d~~g~~l~LRpD~T~~iaR~~~~~~~-~~~~p~r~~y~g~VfR~~~~~~-------gr~re~~Q~g~Eiig~~~-~~a 125 (314)
T TIGR00443 55 LFDSLGRVLGLRPDMTTPIARAVSTRLR-DRPLPLRLCYAGNVFRTNESGA-------GRSREFTQAGVELIGAGG-PAA 125 (314)
T ss_pred EECCCCCEEeecCcCcHHHHHHHHHhcc-cCCCCeEEEEeceEeecCCCcC-------CCcccccccceEEeCCCC-chh
Confidence 4577889999999888888888875443 5678999999999999998543 388999877776666655 334
Q ss_pred HHHHHHHHHHHHHHHHHcCCc
Q psy11602 93 WKMLDEMIQNSEEFYADLGIA 113 (1083)
Q Consensus 93 ~~~~~~~~~~y~~if~~LgLp 113 (1083)
+ .|++....++++.||+.
T Consensus 126 d---aEvi~l~~~~l~~lg~~ 143 (314)
T TIGR00443 126 D---AEVIALLIEALKALGLK 143 (314)
T ss_pred H---HHHHHHHHHHHHHcCCC
Confidence 4 58899999999999983
No 129
>cd00669 Asp_Lys_Asn_RS_core Asp_Lys_Asn_tRNA synthetase class II core domain. This domain is the core catalytic domain of class II aminoacyl-tRNA synthetases of the subgroup containing aspartyl, lysyl, and asparaginyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. Nearly all class II tRNA synthetases are dimers and enzymes in this subgroup are homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA.
Probab=95.09 E-value=0.18 Score=56.66 Aligned_cols=69 Identities=13% Similarity=0.104 Sum_probs=46.9
Q ss_pred CCCCeeEecCChHHHHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHHHHHH
Q psy11602 17 ELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESWKML 96 (1083)
Q Consensus 17 ~~~~~~L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s~~~~ 96 (1083)
.+++++|+-..|..+--+.+.- +. |+|+|+++||+|...+ -|.+||+|.|.+....+- ++..+..
T Consensus 47 ~g~~~~L~~Spql~~~~~~~~~-~~------~vf~i~~~fR~e~~~~-------~hl~EF~~le~e~~~~~~-~dvm~~~ 111 (269)
T cd00669 47 LGLDYYLRISPQLFKKRLMVGG-LD------RVFEINRNFRNEDLRA-------RHQPEFTMMDLEMAFADY-EDVIELT 111 (269)
T ss_pred CCCcEEeecCHHHHHHHHHhcC-CC------cEEEEecceeCCCCCC-------CcccceeEEEEEEecCCH-HHHHHHH
Confidence 3678888877775544333221 11 9999999999994322 389999999999765543 5566655
Q ss_pred HHHH
Q psy11602 97 DEMI 100 (1083)
Q Consensus 97 ~~~~ 100 (1083)
++++
T Consensus 112 e~lv 115 (269)
T cd00669 112 ERLV 115 (269)
T ss_pred HHHH
Confidence 5555
No 130
>PRK12292 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=94.41 E-value=0.13 Score=60.82 Aligned_cols=89 Identities=17% Similarity=0.116 Sum_probs=68.8
Q ss_pred CCCC-CCCCeeEecCChHHHHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchH
Q psy11602 13 PEKD-ELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDE 91 (1083)
Q Consensus 13 ~~dr-~~~~~~L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~ 91 (1083)
..|+ +++.++|+|=--.+++-+++... ....+|+|+|.++++||.|....| |.|||.....=.+..+. ..
T Consensus 65 f~d~~~g~~l~LRpD~T~~iaR~~a~~~-~~~~~p~r~~y~g~vfR~~~~~~g-------r~ref~Q~g~EiiG~~~-~~ 135 (391)
T PRK12292 65 LVDQLSGRTLGLRPDMTAQIARIAATRL-ANRPGPLRLCYAGNVFRAQERGLG-------RSREFLQSGVELIGDAG-LE 135 (391)
T ss_pred EeecCCCCEEEECCCCcHHHHHHHHHhc-cCCCCCeEEEeeceeeecCCCcCC-------CccchhccceEEeCCCC-ch
Confidence 4577 78899999999999999887543 345679999999999999976555 78888766554454444 23
Q ss_pred HHHHHHHHHHHHHHHHHHcCCc
Q psy11602 92 SWKMLDEMIQNSEEFYADLGIA 113 (1083)
Q Consensus 92 s~~~~~~~~~~y~~if~~LgLp 113 (1083)
++ .|++....++++.|||+
T Consensus 136 aD---aEvi~l~~~~l~~lgl~ 154 (391)
T PRK12292 136 AD---AEVILLLLEALKALGLP 154 (391)
T ss_pred HH---HHHHHHHHHHHHHcCCC
Confidence 33 48899999999999986
No 131
>PRK00488 pheS phenylalanyl-tRNA synthetase subunit alpha; Validated
Probab=93.88 E-value=0.65 Score=53.76 Aligned_cols=143 Identities=15% Similarity=0.235 Sum_probs=85.4
Q ss_pred eEecCChHHHHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHHHHHHHHHHH
Q psy11602 22 YLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESWKMLDEMIQ 101 (1083)
Q Consensus 22 ~L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s~~~~~~~~~ 101 (1083)
.|.-||=.|+.--... ...+|+++..++.+||.+.... -+..+|..+|...++..- .|..+..
T Consensus 165 ~lLRThTSp~qir~L~----~~~~Pirif~~G~VyR~D~~Da-------tH~~~FhQleglvvd~~v------tf~dLK~ 227 (339)
T PRK00488 165 LLLRTHTSPVQIRTME----KQKPPIRIIAPGRVYRNDSDDA-------THSPMFHQVEGLVVDKNI------SFADLKG 227 (339)
T ss_pred ceeeccCcHHHHHHHH----hcCCCeEEEEeeeEEEcCCCCc-------ccCcceeeEEEEEEeCCC------CHHHHHH
Confidence 4555666665432222 1678999999999999987211 157899999999998765 4566666
Q ss_pred HHHHHHHHc-CCceEEEEeccCCCCcccceeEeEEEEecC--------CCceeEEEEcCCCchhhhhcccceeccCC-Cc
Q psy11602 102 NSEEFYADL-GIAYRVVNIVSGALNHAAAKKLDLEAWFPG--------SGAFRELVSCSNCLDYQSRRLLVRYGQTK-QK 171 (1083)
Q Consensus 102 ~y~~if~~L-gLpyrvv~~~sgdlg~~as~~~diE~~~P~--------~~~~~ev~s~s~cgdyqs~rl~i~y~~~~-~~ 171 (1083)
..+.|++.| |=...+--.|+-=-+---|.++||....-+ ..+|+||.-|---.-..-+..+| +.+ .+
T Consensus 228 ~L~~fl~~~fg~~~~~R~rpsyFPFTePS~Evdv~~~~~~g~gc~~ck~~~WiEilG~Gmv~p~vl~~~gi---d~~~~~ 304 (339)
T PRK00488 228 TLEDFLKAFFGEDVKIRFRPSYFPFTEPSAEVDVSCFKCGGKGCRVCKGTGWLEILGCGMVHPNVLRNVGI---DPEEYS 304 (339)
T ss_pred HHHHHHHHHcCCCCeEEecCCCCCCCCCceEEEEEEeccCCCcccccCCCCceEEeccCccCHHHHHHcCC---Ccccce
Confidence 667777766 422223333544344444556666543222 24699998766544333333333 111 11
Q ss_pred cccccccchhhee
Q psy11602 172 IYATACATTRVIC 184 (1083)
Q Consensus 172 ~n~tg~a~~Rli~ 184 (1083)
--+.|+++.|+.-
T Consensus 305 G~AfG~GleRlaM 317 (339)
T PRK00488 305 GFAFGMGIERLAM 317 (339)
T ss_pred EEEEeecHHHHHH
Confidence 3355888898754
No 132
>PRK09537 pylS pyrolysyl-tRNA synthetase; Reviewed
Probab=93.85 E-value=0.03 Score=66.16 Aligned_cols=60 Identities=17% Similarity=0.259 Sum_probs=43.3
Q ss_pred hhh-hhhcccccccccccCcCceeEEEeeeEEEEEEeCCCchhHHHHHHHHHHHHHHHHHHhCCcEEEE
Q psy11602 287 MLD-EMIQNSEEFYADLDTRGIFRVHQFEKVEQFVLTSPHDDESWKTLDEMIQNSEEFYADLGIAYRVV 354 (1083)
Q Consensus 287 ~~~-~~~~~~~~~~~~~~trGl~Rvhqf~kvE~f~~~~~~~~~s~~~~e~~~~~~e~~~~~L~lpyRvv 354 (1083)
.+| +++....|||......+ +.++|.+++.. ... +...|+++.+.++++|+.|||+|+++
T Consensus 280 ~~P~RIFEIG~VFR~E~~g~~--hlrEf~Ql~~~---iiG---s~~~f~dL~~lleeLL~~LGI~f~i~ 340 (417)
T PRK09537 280 PDPIKIFEIGPCYRKESDGKE--HLEEFTMVNFC---QMG---SGCTRENLENIIDDFLKHLGIDYEII 340 (417)
T ss_pred cCCeeEEEEeceEecCCCCCC--CcceEEEEEEE---EeC---CchHHHHHHHHHHHHHHHCCCCcEEe
Confidence 345 67777789988754433 55666655444 332 34568889999999999999999998
No 133
>KOG0383|consensus
Probab=93.66 E-value=0.023 Score=70.64 Aligned_cols=41 Identities=32% Similarity=0.757 Sum_probs=37.2
Q ss_pred ccccccccccCCCCCCcceecCccCCCccccCCCCCCCCCCCCC
Q psy11602 1035 VLSHKCGLCHLSHDPHTMAKCDTCHLYYHLACLDPPLLRMPKKT 1078 (1083)
Q Consensus 1035 ~~~~~c~~C~~~~~~~~~~~Cd~C~~~yH~~Cl~Ppl~~~P~~~ 1078 (1083)
.....|++|+..++ ++.||+|--+||.+|++|||+..|.++
T Consensus 45 ~~~e~c~ic~~~g~---~l~c~tC~~s~h~~cl~~pl~~~p~~~ 85 (696)
T KOG0383|consen 45 AEQEACRICADGGE---LLWCDTCPASFHASCLGPPLTPQPNGE 85 (696)
T ss_pred hhhhhhhhhcCCCc---EEEeccccHHHHHHccCCCCCcCCccc
Confidence 45667999998777 899999999999999999999999987
No 134
>PRK12293 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=93.37 E-value=0.24 Score=56.13 Aligned_cols=86 Identities=10% Similarity=0.151 Sum_probs=65.5
Q ss_pred CCCCCCCCeeEecCChHHHHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHH
Q psy11602 13 PEKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDES 92 (1083)
Q Consensus 13 ~~dr~~~~~~L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s 92 (1083)
..|+.++.++|+|=--.+|+-+++.... ...+|+|++.++++||.|. |||.....=.+-.+..
T Consensus 63 ~~D~~g~~l~LRpD~T~~iaR~~a~~~~-~~~~p~r~~Y~g~vfR~~~-------------rEf~Q~GvEliG~~~~--- 125 (281)
T PRK12293 63 FSDEKNHQISLRADSTLDVVRIVTKRLG-RSTEHKKWFYIQPVFRYPS-------------NEIYQIGAELIGEEDL--- 125 (281)
T ss_pred EECCCCCEEEECCcCCHHHHHHHHHhcc-cCCCceeEEEeccEEecCC-------------CcccccCeEeeCCCCH---
Confidence 4577888999999999999999875432 3478999999999999873 5776655444444431
Q ss_pred HHHHHHHHHHHHHHHHHcCCceEEEEec
Q psy11602 93 WKMLDEMIQNSEEFYADLGIAYRVVNIV 120 (1083)
Q Consensus 93 ~~~~~~~~~~y~~if~~LgLpyrvv~~~ 120 (1083)
.|++....++++.||+++. +++.
T Consensus 126 ----~Evi~la~~~l~~lgl~~~-i~ig 148 (281)
T PRK12293 126 ----SEILNIAAEIFEELELEPI-LQIS 148 (281)
T ss_pred ----HHHHHHHHHHHHHcCCCCE-EEEC
Confidence 3899999999999999873 5543
No 135
>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain
Probab=93.01 E-value=0.073 Score=54.88 Aligned_cols=70 Identities=20% Similarity=0.464 Sum_probs=47.3
Q ss_pred cccccCC-CCCCCCCcEEEcccCCcccccccccccccCCCcccCCCCCCCC--cccccccCCC--------CCCceeecC
Q psy11602 693 VCCVCLG-ERSDDVNEIVECDSCGVTVHEGCYGVQDTASISSTVSSCSTEP--WFCESCRAGI--------AEPTCELCP 761 (1083)
Q Consensus 693 ~C~VC~~-~~~~~~n~iv~Cd~C~i~VH~~CYGv~~~~~~~~~~~~~~~~~--W~Cd~C~~~~--------~~~~C~LCp 761 (1083)
.|.+|.. +.+.+..+||+|.+|-.+||+.|.|......-.-|.. ..+. .-|+.|.... ..-.|.-|.
T Consensus 1 ~C~~C~~~g~~~~kG~Lv~CQGCs~sYHk~CLG~Rs~ReHlVTKV--g~d~FVLQCr~Cig~~~kKD~~aP~~~~C~~C~ 78 (175)
T PF15446_consen 1 TCDTCGYEGDDRNKGPLVYCQGCSSSYHKACLGPRSQREHLVTKV--GDDDFVLQCRRCIGIAHKKDPRAPHHGMCQQCK 78 (175)
T ss_pred CcccccCCCCCccCCCeEEcCccChHHHhhhcCCccccceeeEEE--cCCceEEechhhcChhhcccCCCCCCCcccccC
Confidence 4899975 3556788999999999999999999854211000111 2233 4588887642 234799998
Q ss_pred CCC
Q psy11602 762 NFG 764 (1083)
Q Consensus 762 ~~g 764 (1083)
..|
T Consensus 79 ~~G 81 (175)
T PF15446_consen 79 KPG 81 (175)
T ss_pred CCC
Confidence 855
No 136
>PLN02972 Histidyl-tRNA synthetase
Probab=92.52 E-value=0.4 Score=60.67 Aligned_cols=87 Identities=14% Similarity=0.079 Sum_probs=64.0
Q ss_pred CCCCCCCCeeEecCChHHHHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHH
Q psy11602 13 PEKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDES 92 (1083)
Q Consensus 13 ~~dr~~~~~~L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s 92 (1083)
+.|+.++.+.|+|=--.|++-+++... ..|+|+|+++++||+|....| |.|||.....=.+.......+
T Consensus 388 f~D~gGr~LaLRPDlTvPiAR~vA~n~----~~p~KrYyiG~VFR~e~pqkG-------R~REF~Q~G~EIIG~~~~~~a 456 (763)
T PLN02972 388 LADQGGELCSLRYDLTVPFARYVAMNG----ITSFKRYQIAKVYRRDNPSKG-------RYREFYQCDFDIAGVYEPMGP 456 (763)
T ss_pred EECCCCCEEEeCCCChHHHHHHHHhCC----CCcceEEEeccEEecCCCCCC-------CCccceEEeEEEEcCCCcchh
Confidence 568889999999999999999887643 248999999999999986555 667886544333332221112
Q ss_pred HHHHHHHHHHHHHHHHHcCCc
Q psy11602 93 WKMLDEMIQNSEEFYADLGIA 113 (1083)
Q Consensus 93 ~~~~~~~~~~y~~if~~LgLp 113 (1083)
=.|++....++++.|||+
T Consensus 457 ---DAEVI~La~E~L~~LGi~ 474 (763)
T PLN02972 457 ---DFEIIKVLTELLDELDIG 474 (763)
T ss_pred ---hHHHHHHHHHHHHhCCCC
Confidence 246888888999999985
No 137
>PRK12421 ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=92.48 E-value=0.46 Score=56.30 Aligned_cols=88 Identities=7% Similarity=-0.118 Sum_probs=65.2
Q ss_pred CCCC-CCCCeeEecCChHHHHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchH
Q psy11602 13 PEKD-ELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDE 91 (1083)
Q Consensus 13 ~~dr-~~~~~~L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~ 91 (1083)
..|+ .++.+.|+|=--.+++-+.+... ....|+|+|.++++||.+....| |.|||.....=.+..+. ..
T Consensus 69 f~D~~~g~~l~LRpD~T~~iaR~~a~~~--~~~~p~R~~Y~g~VfR~~~~~~g-------r~rEf~Q~GvEiiG~~~-~~ 138 (392)
T PRK12421 69 LIDQLSGRLMGVRADITPQVARIDAHLL--NREGVARLCYAGSVLHTLPQGLF-------GSRTPLQLGAELYGHAG-IE 138 (392)
T ss_pred EEcCCCCcEEEECCcCCHHHHHHHHhhc--CCCCceEEEEeeeEEEcCCCcCC-------CcCccceeceEEeCCCC-ch
Confidence 3466 57889999999999999877543 23679999999999998874444 77888766555554444 22
Q ss_pred HHHHHHHHHHHHHHHHHHcCCc
Q psy11602 92 SWKMLDEMIQNSEEFYADLGIA 113 (1083)
Q Consensus 92 s~~~~~~~~~~y~~if~~LgLp 113 (1083)
++ .|++....++++.||++
T Consensus 139 aD---aEvi~l~~e~l~~lgi~ 157 (392)
T PRK12421 139 AD---LEIIRLMLGLLRNAGVP 157 (392)
T ss_pred hH---HHHHHHHHHHHHHcCCC
Confidence 32 46788888899999986
No 138
>COG5141 PHD zinc finger-containing protein [General function prediction only]
Probab=91.45 E-value=0.079 Score=62.00 Aligned_cols=79 Identities=27% Similarity=0.493 Sum_probs=61.6
Q ss_pred eeccccCCCCCCCCceeeccCCCCcccccchhhhHHHHHHhhhhcccceecccccCCCCCccccccCCCCCCCCCcEEEc
Q psy11602 632 VCCVCLGERSDDVNEIVECDSCGVTVHEVKIQQEFLAIKFLIRYLLFWFQLEDFSKFSKILVCCVCLGERSDDVNEIVEC 711 (1083)
Q Consensus 632 ~c~~c~g~~~~~~~~l~~C~~Cg~~~h~~~~~~~~~~i~~~~~~~~~W~~~~d~~~~~~~~~C~VC~~~~~~~~n~iv~C 711 (1083)
.|.+|++..+.|.+.|+.|+.|...+|-.| +.|.|+... .|+|-+|+-..-+...|+-|-+.+. .||
T Consensus 195 ~C~~c~~t~~eN~naiVfCdgC~i~VHq~C-----YGI~f~peG--~WlCrkCi~~~~~i~~C~fCps~dG------aFk 261 (669)
T COG5141 195 ICTKCTSTHNENSNAIVFCDGCEICVHQSC-----YGIQFLPEG--FWLCRKCIYGEYQIRCCSFCPSSDG------AFK 261 (669)
T ss_pred hhHhccccccCCcceEEEecCcchhhhhhc-----ccceecCcc--hhhhhhhcccccceeEEEeccCCCC------cee
Confidence 699999999999999999999999999555 488887776 9999999877777778999974432 244
Q ss_pred cc-CCcccccccc
Q psy11602 712 DS-CGVTVHEGCY 723 (1083)
Q Consensus 712 d~-C~i~VH~~CY 723 (1083)
.- =|.=+|..|-
T Consensus 262 qT~dgrW~H~iCA 274 (669)
T COG5141 262 QTSDGRWGHVICA 274 (669)
T ss_pred eccCCchHhHhHH
Confidence 32 3556677773
No 139
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=91.21 E-value=0.13 Score=43.53 Aligned_cols=33 Identities=33% Similarity=0.706 Sum_probs=28.0
Q ss_pred CccccccCCCCCCCCCcEEEcccCCccccccccc
Q psy11602 691 ILVCCVCLGERSDDVNEIVECDSCGVTVHEGCYG 724 (1083)
Q Consensus 691 ~~~C~VC~~~~~~~~n~iv~Cd~C~i~VH~~CYG 724 (1083)
...|.+|...- .+.+.+|+|..|+-.+|+.||-
T Consensus 5 ~~~C~~Cg~~~-~~~dDiVvCp~CgapyHR~C~~ 37 (54)
T PF14446_consen 5 GCKCPVCGKKF-KDGDDIVVCPECGAPYHRDCWE 37 (54)
T ss_pred CccChhhCCcc-cCCCCEEECCCCCCcccHHHHh
Confidence 45899998653 3588999999999999999994
No 140
>PRK12295 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=90.99 E-value=0.79 Score=54.01 Aligned_cols=90 Identities=20% Similarity=0.252 Sum_probs=64.1
Q ss_pred CCCCCCCCeeEecCChHHHHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHH
Q psy11602 13 PEKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDES 92 (1083)
Q Consensus 13 ~~dr~~~~~~L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s 92 (1083)
..|+.++.++|+|=--.+++-++... ....|+|+|.++++||.| .| |.|||.....=.+..+....|
T Consensus 52 f~D~~G~~l~LRpD~T~piaR~~~~~---~~~~p~R~~Y~g~VfR~~---~g-------r~rEf~Q~GvEiiG~~~~~~a 118 (373)
T PRK12295 52 TSDENGEELCLRPDFTIPVCRRHIAT---AGGEPARYAYLGEVFRQR---RD-------RASEFLQAGIESFGRADPAAA 118 (373)
T ss_pred EECCCCCEEeeCCCCcHHHHHHHHHc---CCCCCeEEEEEccEEECC---CC-------CCCcceEeeEEeeCCCCCccc
Confidence 56888999999999999999887654 246799999999999999 23 557886544444432221112
Q ss_pred HHHHHHHHHHHHHHHHHcCCceEEEE
Q psy11602 93 WKMLDEMIQNSEEFYADLGIAYRVVN 118 (1083)
Q Consensus 93 ~~~~~~~~~~y~~if~~LgLpyrvv~ 118 (1083)
=.|++....++++.|||.=..+.
T Consensus 119 ---DaEvi~l~~~~L~~lgl~~~~i~ 141 (373)
T PRK12295 119 ---DAEVLALALEALAALGPGDLEVR 141 (373)
T ss_pred ---hHHHHHHHHHHHHHcCCCceEEE
Confidence 25678888889999998633333
No 141
>KOG4299|consensus
Probab=90.41 E-value=0.14 Score=62.17 Aligned_cols=53 Identities=26% Similarity=0.695 Sum_probs=43.1
Q ss_pred CccccccCCCCCCCCCcEEEcccCCcccccccccccccCCCcccCCCCCCCCcccccccCC
Q psy11602 691 ILVCCVCLGERSDDVNEIVECDSCGVTVHEGCYGVQDTASISSTVSSCSTEPWFCESCRAG 751 (1083)
Q Consensus 691 ~~~C~VC~~~~~~~~n~iv~Cd~C~i~VH~~CYGv~~~~~~~~~~~~~~~~~W~Cd~C~~~ 751 (1083)
..+|+-|.+... -+.++.||.|...+||.|.-++..+ ...|.|.|+|--|..-
T Consensus 253 ~~fCsaCn~~~~--F~~~i~CD~Cp~sFH~~CLePPl~~------eniP~g~W~C~ec~~k 305 (613)
T KOG4299|consen 253 EDFCSACNGSGL--FNDIICCDGCPRSFHQTCLEPPLEP------ENIPPGSWFCPECKIK 305 (613)
T ss_pred HHHHHHhCCccc--cccceeecCCchHHHHhhcCCCCCc------ccCCCCccccCCCeee
Confidence 449999997644 4999999999999999999886432 2348899999999864
No 142
>TIGR00468 pheS phenylalanyl-tRNA synthetase, alpha subunit. Most phenylalanyl-tRNA synthetases are heterodimeric, with 2 alpha (pheS) and 2 beta (pheT) subunits. This model describes the alpha subunit, which shows some similarity to class II aminoacyl-tRNA ligases. Mitochondrial phenylalanyl-tRNA synthetase is a single polypeptide chain, active as a monomer, and similar to this chain rather than to the beta chain, but excluded from this model. An interesting feature of the alignment of all sequences captured by this model is a deep split between non-spirochete bacterial examples and all other examples; supporting this split is a relative deletion of about 50 residues in the former set between two motifs well conserved throughout the alignment.
Probab=89.99 E-value=2.9 Score=47.69 Aligned_cols=143 Identities=13% Similarity=0.088 Sum_probs=82.5
Q ss_pred CeeEecCChHHHHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHHHHHHHHH
Q psy11602 20 DKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESWKMLDEM 99 (1083)
Q Consensus 20 ~~~L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s~~~~~~~ 99 (1083)
..+|+++-=-.+...++.... .|++++.++++||.+.. +.. +..||.+++.......- .|..+
T Consensus 128 ~~vLRtsl~p~ll~~l~~N~~----~pirlFEiGrVfr~d~~----d~~---~~pef~ql~gl~~~~~~------~f~dL 190 (294)
T TIGR00468 128 RLLLRTHTTAVQLRTMEENEK----PPIRIFSPGRVFRNDTV----DAT---HLPEFHQVEGLVIDKNV------SFTNL 190 (294)
T ss_pred CcceecccHHHHHHHHHhcCC----CCceEEEecceEEcCCC----CCc---cCChhhEEEEEEECCCC------CHHHH
Confidence 346666555445544443222 89999999999998752 111 13388888888665322 37889
Q ss_pred HHHHHHHHHHcCCceEEEEeccCCCCcccceeEeEEEEecCCCceeEEEEcCCCchhhhhcccceeccCCCccccccccc
Q psy11602 100 IQNSEEFYADLGIAYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQSRRLLVRYGQTKQKIYATACAT 179 (1083)
Q Consensus 100 ~~~y~~if~~LgLpyrvv~~~sgdlg~~as~~~diE~~~P~~~~~~ev~s~s~cgdyqs~rl~i~y~~~~~~~n~tg~a~ 179 (1083)
..+.+.|++.|++...+--.++..-+---+.+.|| +.+...+|++|+.|.-.--...+.++|.. ...+...++.+
T Consensus 191 Kg~le~ll~~l~~~~~~~~~~~~~p~~~Ps~e~~i--~~~~g~~w~eiG~~G~vhP~Vl~~~gi~~---~~~v~afel~l 265 (294)
T TIGR00468 191 KGFLEEFLKKMFGETEIRFRPSYFPFTEPSAEIDV--YCWEGKTWLEVLGAGMFRPEVLEPMGIDP---TYPGFAWGIGI 265 (294)
T ss_pred HHHHHHHHHHhCCCcceeeccCCCCCCCCCEEEEE--EEeCCCccEEEEEeccCcHHHHHHCCCCC---CCeEEEEEeeH
Confidence 99999999999986211112322222222333444 44223458899877655545555566531 01234456666
Q ss_pred hhhee
Q psy11602 180 TRVIC 184 (1083)
Q Consensus 180 ~Rli~ 184 (1083)
.|+..
T Consensus 266 erl~m 270 (294)
T TIGR00468 266 ERLAM 270 (294)
T ss_pred HHHHH
Confidence 66543
No 143
>KOG0954|consensus
Probab=89.69 E-value=0.24 Score=60.77 Aligned_cols=64 Identities=25% Similarity=0.451 Sum_probs=46.7
Q ss_pred cccCCCceeeccccCCCCCCCCceeeccCCCCcccccchhhhHHHHHHhhhhcccceecccccCCCCCcccccc
Q psy11602 624 FSKFSKILVCCVCLGERSDDVNEIVECDSCGVTVHEVKIQQEFLAIKFLIRYLLFWFQLEDFSKFSKILVCCVC 697 (1083)
Q Consensus 624 ~~~~~~~~~c~~c~g~~~~~~~~l~~C~~Cg~~~h~~~~~~~~~~i~~~~~~~~~W~~~~d~~~~~~~~~C~VC 697 (1083)
+.-++. +.|++|...++.+.+.||+|+.|...+|..|- .|..+.. ..|.|-.|.. .-...|-.|
T Consensus 266 ie~ded-viCDvCrspD~e~~neMVfCd~Cn~cVHqaCy-----GIle~p~--gpWlCr~Cal--g~~ppCvLC 329 (893)
T KOG0954|consen 266 IEYDED-VICDVCRSPDSEEANEMVFCDKCNICVHQACY-----GILEVPE--GPWLCRTCAL--GIEPPCVLC 329 (893)
T ss_pred eecccc-ceeceecCCCccccceeEEeccchhHHHHhhh-----ceeecCC--CCeeehhccc--cCCCCeeec
Confidence 333444 56999999999999999999999999998885 3433333 5898877653 244466666
No 144
>KOG1973|consensus
Probab=89.55 E-value=0.17 Score=57.11 Aligned_cols=38 Identities=26% Similarity=0.795 Sum_probs=33.4
Q ss_pred CCcEEEccc--CC-cccccccccccccCCCcccCCCCCCCCcccccccCCC
Q psy11602 705 VNEIVECDS--CG-VTVHEGCYGVQDTASISSTVSSCSTEPWFCESCRAGI 752 (1083)
Q Consensus 705 ~n~iv~Cd~--C~-i~VH~~CYGv~~~~~~~~~~~~~~~~~W~Cd~C~~~~ 752 (1083)
-.+||-||+ |. -=+|..|-|+... |.|.|+|..|....
T Consensus 229 yg~Mi~CDn~~C~~eWFH~~CVGL~~~----------PkgkWyC~~C~~~~ 269 (274)
T KOG1973|consen 229 YGKMIGCDNPGCPIEWFHFTCVGLKTK----------PKGKWYCPRCKAEN 269 (274)
T ss_pred cccccccCCCCCCcceEEEeccccccC----------CCCcccchhhhhhh
Confidence 579999999 99 7899999999866 78999999998653
No 145
>PF13393 tRNA-synt_His: Histidyl-tRNA synthetase; PDB: 3HRI_E 3HRK_A 3LC0_A 1Z7N_A 1Z7M_D 3NET_A 1H4V_B 3OD1_A 4E51_B 3RAC_A ....
Probab=89.31 E-value=2.2 Score=48.55 Aligned_cols=89 Identities=21% Similarity=0.207 Sum_probs=67.2
Q ss_pred CCCCCCCCeeEecCChHHHHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHH
Q psy11602 13 PEKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDES 92 (1083)
Q Consensus 13 ~~dr~~~~~~L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s 92 (1083)
+.|++++.+.|+|=--.+++-+++.... ...|.|+|.++++||++....| |.+||..+..=.+..+. ..+
T Consensus 57 ~~D~~G~~l~LR~D~T~~iaR~~a~~~~--~~~~~r~~y~g~vfR~~~~~~g-------~~re~~Q~g~Eiig~~~-~~~ 126 (311)
T PF13393_consen 57 FLDRSGRVLALRPDLTVPIARYVARNLN--LPRPKRYYYIGPVFRYERPGKG-------RPREFYQCGFEIIGSSS-LEA 126 (311)
T ss_dssp EECTTSSEEEE-SSSHHHHHHHHHHCCG--SSSSEEEEEEEEEEEEETTTTT-------BESEEEEEEEEEESSSS-HHH
T ss_pred EEecCCcEeccCCCCcHHHHHHHHHhcC--cCCCceEEEEcceeeccccCCC-------CCceeEEEEEEEECCCC-HHH
Confidence 4588999999999999999999987532 7789999999999999974333 78888766544444444 222
Q ss_pred HHHHHHHHHHHHHHHH-HcCCce
Q psy11602 93 WKMLDEMIQNSEEFYA-DLGIAY 114 (1083)
Q Consensus 93 ~~~~~~~~~~y~~if~-~LgLpy 114 (1083)
=.|++....++++ .|++.-
T Consensus 127 ---daEvi~l~~e~l~~~l~~~~ 146 (311)
T PF13393_consen 127 ---DAEVIKLADEILDRELGLEN 146 (311)
T ss_dssp ---HHHHHHHHHHHHHHHHTTTS
T ss_pred ---HHHHHHHHHHHHHhhcCCCC
Confidence 3578888889997 888743
No 146
>KOG1084|consensus
Probab=88.82 E-value=0.19 Score=58.99 Aligned_cols=85 Identities=19% Similarity=0.251 Sum_probs=61.1
Q ss_pred CCceeecccccccCCcEEecccccCceeeecCccCCcCCCccccCCCCCCCCceeEEeCCCCCCccceeceeeccCCCCc
Q psy11602 812 VGKWVHLVCALYIPGVAFGEVDRLSNVTLFEMPYSRWGAKSCALCPDESYARTELALQSPPVNCVPTLLVYMEVVFPQPP 891 (1083)
Q Consensus 812 ~~~WvHv~CAlw~pev~f~~~~~~~pv~~~~ip~~r~~~~~C~iC~~~~~~~~GaciqC~~~~C~~~fH~~~~~~~~~~~ 891 (1083)
...|.|+.|++|.|.+.+.....|.++.-..+ ||..+.|..|.+ .|+.+.|....|...+|..+.....
T Consensus 237 ~~~~~h~~c~~~~~~~~~~q~~~l~~~~~~v~---r~~~~~c~~c~k-----~ga~~~c~~~~~~~~~h~~c~~~~~--- 305 (375)
T KOG1084|consen 237 FELWYHRYCALWAPNVHESQGGQLTNVDNAVI---RFPSLQCILCQK-----PGATLKCVQASLLSNAHFPCARAKN--- 305 (375)
T ss_pred hhHHHHHHHHhcCCcceeccCccccCchhhhh---cccchhcccccC-----CCCchhhhhhhhhcccCcccccCcc---
Confidence 45899999999999999999887877764433 332247999986 7999999999999999986653222
Q ss_pred cchhhhhHHhhhhccC
Q psy11602 892 QRKLGKYKVKYVDMKS 907 (1083)
Q Consensus 892 ~~~~~~~r~~y~~~~~ 907 (1083)
.+.+...+..|+..|.
T Consensus 306 ~~~~~~~r~v~~~~h~ 321 (375)
T KOG1084|consen 306 GIPLDYDRKVSCPRHR 321 (375)
T ss_pred cccchhhhhccCCCCC
Confidence 2223344555665554
No 147
>TIGR00459 aspS_bact aspartyl-tRNA synthetase, bacterial type. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_bact, represents aspartyl-tRNA synthetases from the Bacteria and from mitochondria. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn). This model generates very low scores for the archaeal type of aspS and for asnS; scores between the trusted and noise cutoffs represent fragmentary sequences.
Probab=88.59 E-value=0.44 Score=59.03 Aligned_cols=46 Identities=17% Similarity=0.476 Sum_probs=36.1
Q ss_pred eEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHHHHHHHHHHH
Q psy11602 48 RYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESWKMLDEMIQ 101 (1083)
Q Consensus 48 klyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s~~~~~~~~~ 101 (1083)
|+|||++|||+|..... |.-||+|.|.|....+. ++..+..++|+.
T Consensus 208 rvfqI~~~FR~E~~~t~-------r~pEFT~le~E~af~d~-~dvm~~~E~li~ 253 (583)
T TIGR00459 208 RYYQIARCFRDEDLRAD-------RQPEFTQIDMEMSFMTQ-EDVMELIEKLVS 253 (583)
T ss_pred cEEEEcceeeCCCCCCC-------CCcccCcceeeecCCCH-HHHHHHHHHHHH
Confidence 79999999999994332 77999999999877654 667776666663
No 148
>PLN02903 aminoacyl-tRNA ligase
Probab=88.49 E-value=0.55 Score=58.66 Aligned_cols=46 Identities=24% Similarity=0.525 Sum_probs=35.6
Q ss_pred eEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHHHHHHHHHHH
Q psy11602 48 RYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESWKMLDEMIQ 101 (1083)
Q Consensus 48 klyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s~~~~~~~~~ 101 (1083)
|+|||++|||+|..... |.-||+|.|.|....+. ++..+..++|+.
T Consensus 274 RvFqIa~~FR~E~~~t~-------RhpEFTqLE~E~sf~d~-~dvm~~~E~li~ 319 (652)
T PLN02903 274 RYYQIARCFRDEDLRAD-------RQPEFTQLDMELAFTPL-EDMLKLNEDLIR 319 (652)
T ss_pred cEEEEehhhccCCCCCC-------cccceeeeeeeecCCCH-HHHHHHHHHHHH
Confidence 79999999999984322 77899999999776654 566666666663
No 149
>PRK09350 poxB regulator PoxA; Provisional
Probab=88.48 E-value=0.36 Score=55.32 Aligned_cols=70 Identities=11% Similarity=0.180 Sum_probs=48.2
Q ss_pred CCCCCeeEecCChHHHHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHHHHH
Q psy11602 16 DELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESWKM 95 (1083)
Q Consensus 16 r~~~~~~L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s~~~ 95 (1083)
..++.++|+-..|..+.-+++.. + -|+|+++++||+|...+ -+..||+|.|.|....+- ++..+.
T Consensus 55 ~~~~~~~L~~SPe~~~kr~la~~------~-~rvf~i~~~FR~e~~~~-------~H~~EFt~lE~y~~~~d~-~dlm~~ 119 (306)
T PRK09350 55 SQGKTLWLMTSPEYHMKRLLAAG------S-GPIFQICKSFRNEEAGR-------YHNPEFTMLEWYRPHYDM-YRLMNE 119 (306)
T ss_pred cCCcceEEecCHHHHHHHHhhcc------c-cceEEecceeecCCCCC-------CCCcHHHhhhhhhhCCCH-HHHHHH
Confidence 45678899877777655444322 2 29999999999999533 378899999999776543 344444
Q ss_pred HHHHH
Q psy11602 96 LDEMI 100 (1083)
Q Consensus 96 ~~~~~ 100 (1083)
.+.++
T Consensus 120 ~E~li 124 (306)
T PRK09350 120 VDDLL 124 (306)
T ss_pred HHHHH
Confidence 44444
No 150
>KOG0956|consensus
Probab=87.68 E-value=0.19 Score=61.08 Aligned_cols=45 Identities=38% Similarity=0.750 Sum_probs=33.3
Q ss_pred ccCCCccceeeecccccccccccccccccccCCCCCCccccccccc
Q psy11602 575 ECDAGMCRTYFHVTCAQREGLLSEATSEEVDQADPFYAHCRLHADK 620 (1083)
Q Consensus 575 ~c~~~~c~~~~H~~ca~~~g~~~e~~~~~~~~~~p~~~~c~~h~~k 620 (1083)
.|.--+|+.-||++|||..|||=||.--. -...-||-+|+.|..|
T Consensus 139 tCNKs~CkqaFHVTCAQ~~GLLCEE~gn~-~dNVKYCGYCk~HfsK 183 (900)
T KOG0956|consen 139 TCNKSGCKQAFHVTCAQRAGLLCEEEGNI-SDNVKYCGYCKYHFSK 183 (900)
T ss_pred ecccccchhhhhhhHhhhhccceeccccc-cccceechhHHHHHHH
Confidence 67777888999999999999885554221 2344677799999644
No 151
>COG0173 AspS Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=87.29 E-value=0.55 Score=56.75 Aligned_cols=83 Identities=17% Similarity=0.309 Sum_probs=52.2
Q ss_pred CeeEecCChHHHHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHHHHHHHHH
Q psy11602 20 DKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESWKMLDEM 99 (1083)
Q Consensus 20 ~~~L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s~~~~~~~ 99 (1083)
++|=-|-|-+-+-.|.+-.=+. |||||.+|||||.--. | |+=||+.+|+=.-..++ ++-.++.|.|
T Consensus 189 ~FYALPQSPQlfKQLLMvsGfd------RYyQIarCFRDEDlRa--D-----RQPEFTQiD~EmSF~~~-edv~~~~E~l 254 (585)
T COG0173 189 KFYALPQSPQLFKQLLMVAGFD------RYYQIARCFRDEDLRA--D-----RQPEFTQIDLEMSFVDE-EDVMELIEKL 254 (585)
T ss_pred ceeecCCCHHHHHHHHHHhccc------ceeeeeeeeccccccc--c-----cCCcceeEeEEeecCCH-HHHHHHHHHH
Confidence 3555566655555544432222 7999999999998433 3 78899999986555555 5677777777
Q ss_pred HHH-HHHHHH-HcCCceEE
Q psy11602 100 IQN-SEEFYA-DLGIAYRV 116 (1083)
Q Consensus 100 ~~~-y~~if~-~LgLpyrv 116 (1083)
+.. ++++.. .|..||..
T Consensus 255 ~~~vf~~~~~i~l~~pFpr 273 (585)
T COG0173 255 LRYVFKEVKGIELKTPFPR 273 (585)
T ss_pred HHHHHHHhcCCccCCCccc
Confidence 743 333332 55555543
No 152
>PRK00476 aspS aspartyl-tRNA synthetase; Validated
Probab=84.93 E-value=0.97 Score=56.31 Aligned_cols=46 Identities=20% Similarity=0.462 Sum_probs=34.4
Q ss_pred eEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHHHHHHHHHHH
Q psy11602 48 RYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESWKMLDEMIQ 101 (1083)
Q Consensus 48 klyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s~~~~~~~~~ 101 (1083)
|+|||++|||+|..... |.-||+|.|.+....+. ++..+..++++.
T Consensus 211 rvfqi~~~FR~E~~~~~-------r~~EFt~le~e~af~~~-~dvm~~~E~li~ 256 (588)
T PRK00476 211 RYYQIARCFRDEDLRAD-------RQPEFTQIDIEMSFVTQ-EDVMALMEGLIR 256 (588)
T ss_pred ceEEEeceeecCCCCCC-------cCcccccceeeecCCCH-HHHHHHHHHHHH
Confidence 79999999999993211 45599999999877654 566666666663
No 153
>KOG1246|consensus
Probab=83.44 E-value=0.73 Score=60.36 Aligned_cols=44 Identities=32% Similarity=0.739 Sum_probs=39.6
Q ss_pred ccccccccccCCCCCCcceecCccCCCccccCCCCCCCCCCCCCc
Q psy11602 1035 VLSHKCGLCHLSHDPHTMAKCDTCHLYYHLACLDPPLLRMPKKTK 1079 (1083)
Q Consensus 1035 ~~~~~c~~C~~~~~~~~~~~Cd~C~~~yH~~Cl~Ppl~~~P~~~~ 1079 (1083)
.....|..|.+..++..+ +||.|++.||.+|+.||++.+|++.|
T Consensus 153 ~~~~~~~~~~k~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (904)
T KOG1246|consen 153 IDYPQCNTCSKGKEEKLL-LCDSCDDSYHTYCLRPPLTRVPDGDW 196 (904)
T ss_pred ccchhhhccccCCCccce-ecccccCcccccccCCCCCcCCcCcc
Confidence 467789999999988555 99999999999999999999999994
No 154
>cd00773 HisRS-like_core Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain. HisRS is a homodimer. It is responsible for the attachment of histidine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ. HisZ along with HisG catalyze the first reaction in histidine biosynthesis. HisZ is found only in a subset of bacteria and differs from HisRS in lacking a C-terminal anti-codon binding domain.
Probab=83.42 E-value=2.3 Score=47.36 Aligned_cols=68 Identities=21% Similarity=0.187 Sum_probs=51.4
Q ss_pred hh-hhhcccccccccccCcCceeEEEeeeEEEEEEeCCCchhHHHHHHHHHHHHHHHHHHhCCcEEEEeccCCCc
Q psy11602 288 LD-EMIQNSEEFYADLDTRGIFRVHQFEKVEQFVLTSPHDDESWKTLDEMIQNSEEFYADLGIAYRVVNIVSGAL 361 (1083)
Q Consensus 288 ~~-~~~~~~~~~~~~~~trGl~Rvhqf~kvE~f~~~~~~~~~s~~~~e~~~~~~e~~~~~L~lpyRvv~~~~~dl 361 (1083)
+| +++....+||+.+...|-.|.+....+|+|+...+ ..-.|++..+.++++.|+++--.+.+..-++
T Consensus 81 ~p~k~~y~g~vfR~e~~~~g~~re~~Q~g~Eiig~~~~------~~daE~i~l~~~~l~~lg~~~~~i~l~~~~i 149 (261)
T cd00773 81 LPLKLYYIGPVFRYERPQKGRYREFYQVGVEIIGSDSP------LADAEVIALAVEILEALGLKDFQIKINHRGI 149 (261)
T ss_pred CCeEEEEEcCEEecCCCCCCCccceEEeceeeeCCCCh------HHHHHHHHHHHHHHHHcCCCceEEEECCHHH
Confidence 45 67777889998887788888888888999987333 2226799999999999998754555554444
No 155
>PRK12820 bifunctional aspartyl-tRNA synthetase/aspartyl/glutamyl-tRNA amidotransferase subunit C; Provisional
Probab=82.52 E-value=1.1 Score=56.53 Aligned_cols=69 Identities=17% Similarity=0.280 Sum_probs=44.5
Q ss_pred CCeeEecCChHHHHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHHHHHHHH
Q psy11602 19 DDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESWKMLDE 98 (1083)
Q Consensus 19 ~~~~L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s~~~~~~ 98 (1083)
..+|.-|+|.+-...+..-.-+ =|+|||++|||+|... +. |.-||+|.|.|....+. ++.....+.
T Consensus 203 ~~~y~L~qSPQlykq~lm~~G~------~rvfqI~~~FR~E~~~----t~---r~pEFT~LE~E~af~d~-~dvm~l~E~ 268 (706)
T PRK12820 203 KEFYALPQSPQLFKQLLMIAGF------ERYFQLARCFRDEDLR----PN---RQPEFTQLDIEASFIDE-EFIFELIEE 268 (706)
T ss_pred CcceecCCCHHHHHHHHHhccC------CcEEEEechhcCCCCC----CC---cCccccccceeeccCCH-HHHHHHHHH
Confidence 3445455666544443321111 2799999999999942 22 67999999999766655 566666666
Q ss_pred HHH
Q psy11602 99 MIQ 101 (1083)
Q Consensus 99 ~~~ 101 (1083)
|+.
T Consensus 269 li~ 271 (706)
T PRK12820 269 LTA 271 (706)
T ss_pred HHH
Confidence 654
No 156
>KOG1973|consensus
Probab=81.28 E-value=0.85 Score=51.51 Aligned_cols=42 Identities=24% Similarity=0.557 Sum_probs=33.2
Q ss_pred ccccccccCCCCCCcceecCc--cC-CCccccCCCCCCCCCCCCCcCC
Q psy11602 1037 SHKCGLCHLSHDPHTMAKCDT--CH-LYYHLACLDPPLLRMPKKTKLM 1081 (1083)
Q Consensus 1037 ~~~c~~C~~~~~~~~~~~Cd~--C~-~~yH~~Cl~Ppl~~~P~~~~~~ 1081 (1083)
....++|. ...-..|+-||. |. .|||+.|+- |+.-|+|.|+|
T Consensus 218 e~~yC~Cn-qvsyg~Mi~CDn~~C~~eWFH~~CVG--L~~~PkgkWyC 262 (274)
T KOG1973|consen 218 EPTYCICN-QVSYGKMIGCDNPGCPIEWFHFTCVG--LKTKPKGKWYC 262 (274)
T ss_pred CCEEEEec-ccccccccccCCCCCCcceEEEeccc--cccCCCCcccc
Confidence 33455666 344677999999 99 999999997 88999999665
No 157
>PRK00484 lysS lysyl-tRNA synthetase; Reviewed
Probab=80.25 E-value=3.1 Score=50.86 Aligned_cols=70 Identities=20% Similarity=0.169 Sum_probs=46.8
Q ss_pred CCCCCeeEecCChHHHHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHHHHH
Q psy11602 16 DELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESWKM 95 (1083)
Q Consensus 16 r~~~~~~L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s~~~ 95 (1083)
-.+.++||+-..|..+=-++.. . + =|+|+|+++||+|.. ++ -+.-||+|.|.|....+. ++..+.
T Consensus 217 ~~~~~~yL~~Spql~lk~l~v~---g---~-~rVfei~~~FR~E~~----~~---rH~pEFt~lE~e~a~~d~-~d~m~~ 281 (491)
T PRK00484 217 ALDIDLYLRIAPELYLKRLIVG---G---F-ERVYEIGRNFRNEGI----DT---RHNPEFTMLEFYQAYADY-NDMMDL 281 (491)
T ss_pred cCCCceEeccCHHHHHHHHHhc---c---C-CcEEEEecceecCCC----CC---CcCCceEEEEEEEecCCH-HHHHHH
Confidence 3467788876666443333221 1 1 379999999999983 23 478899999999776543 555555
Q ss_pred HHHHH
Q psy11602 96 LDEMI 100 (1083)
Q Consensus 96 ~~~~~ 100 (1083)
.++++
T Consensus 282 ~E~li 286 (491)
T PRK00484 282 TEELI 286 (491)
T ss_pred HHHHH
Confidence 55555
No 158
>CHL00201 syh histidine-tRNA synthetase; Provisional
Probab=79.63 E-value=1.4 Score=52.83 Aligned_cols=61 Identities=15% Similarity=0.207 Sum_probs=46.8
Q ss_pred hhhhh-hhhcccccccccccCcCceeEEEeee--EEEEEEeCCCchhHHHHHHHHHHHHHHHHHHhCCc-EEE
Q psy11602 285 WKMLD-EMIQNSEEFYADLDTRGIFRVHQFEK--VEQFVLTSPHDDESWKTLDEMIQNSEEFYADLGIA-YRV 353 (1083)
Q Consensus 285 ~~~~~-~~~~~~~~~~~~~~trGl~Rvhqf~k--vE~f~~~~~~~~~s~~~~e~~~~~~e~~~~~L~lp-yRv 353 (1083)
+..+| +++....+||+.+..+| |.+||.. ||+|+...+. ++ -|++..+-++|+.|||+ |++
T Consensus 98 ~~~~p~R~~y~g~vfR~e~~q~G--R~Ref~Q~g~EiiG~~~~~---aD---~Evi~l~~~~l~~lGl~~~~i 162 (430)
T CHL00201 98 YHSNLQRLWYSGPMFRYERPQSG--RQRQFHQLGIEFIGSIDAR---AD---TEVIHLAMQIFNELQVKNLIL 162 (430)
T ss_pred ccCCCeEEEEEcceecCCCCcCC--ccceeEEeceEEECCCChh---hH---HHHHHHHHHHHHHcCCCceEE
Confidence 44566 77888889999888888 6666666 8999877764 22 46899999999999996 544
No 159
>KOG0383|consensus
Probab=79.61 E-value=0.9 Score=56.98 Aligned_cols=40 Identities=18% Similarity=0.148 Sum_probs=35.0
Q ss_pred cccccccccCCCCCCcceecCccCCCccccCCCC-CCCCCCCCC
Q psy11602 1036 LSHKCGLCHLSHDPHTMAKCDTCHLYYHLACLDP-PLLRMPKKT 1078 (1083)
Q Consensus 1036 ~~~~c~~C~~~~~~~~~~~Cd~C~~~yH~~Cl~P-pl~~~P~~~ 1078 (1083)
....|..|.+... .++|++|-..||..||+| |+.+.|++.
T Consensus 505 ~d~~~~~~~~~l~---~l~~p~~lrr~k~d~l~~~P~Kte~i~~ 545 (696)
T KOG0383|consen 505 HDISCEEQIKKLH---LLLCPHMLRRLKLDVLKPMPLKTELIGR 545 (696)
T ss_pred chhhHHHHHHhhc---cccCchhhhhhhhhhccCCCccceeEEE
Confidence 4556888887666 889999999999999999 999999887
No 160
>KOG2411|consensus
Probab=79.51 E-value=0.86 Score=54.17 Aligned_cols=62 Identities=19% Similarity=0.409 Sum_probs=44.8
Q ss_pred eEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHHHHHHHHHHH-HHHHHHH-HcCCceEEE
Q psy11602 48 RYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESWKMLDEMIQ-NSEEFYA-DLGIAYRVV 117 (1083)
Q Consensus 48 klyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s~~~~~~~~~-~y~~if~-~LgLpyrvv 117 (1083)
|||||.+|||||.--.. |+=||+.+|+=.-..+. ++-.++.|.++. .+-+++. .|..||..+
T Consensus 249 rYyQiARCfRDEdlR~D-------RQPEFTQvD~EMsF~~~-~dim~liEdll~~~ws~~k~~~l~~PF~ri 312 (628)
T KOG2411|consen 249 RYYQIARCFRDEDLRAD-------RQPEFTQVDMEMSFTDQ-EDIMKLIEDLLRYVWSEDKGIQLPVPFPRI 312 (628)
T ss_pred hHHhHHhhhcccccCcc-------cCCcceeeeeEEeccCH-HHHHHHHHHHHHHhchhhcCCCCCCCcccc
Confidence 79999999999984322 88999999987666666 567777777764 3344444 666676543
No 161
>KOG1245|consensus
Probab=78.76 E-value=0.54 Score=63.39 Aligned_cols=64 Identities=20% Similarity=0.438 Sum_probs=49.7
Q ss_pred CCCccccccCCCCCCCCCcEEEcccCCcccccccccccccCCCcccCCCCCCCCcccccccCCCC-CCceeecCC
Q psy11602 689 SKILVCCVCLGERSDDVNEIVECDSCGVTVHEGCYGVQDTASISSTVSSCSTEPWFCESCRAGIA-EPTCELCPN 762 (1083)
Q Consensus 689 ~~~~~C~VC~~~~~~~~n~iv~Cd~C~i~VH~~CYGv~~~~~~~~~~~~~~~~~W~Cd~C~~~~~-~~~C~LCp~ 762 (1083)
.....|-||+.. ...+.|+.|+.|.-++|..|..+..... +.+.|+|..|..... ...+..+-.
T Consensus 1106 ~~~~~c~~cr~k--~~~~~m~lc~~c~~~~h~~C~rp~~~~~--------~~~dW~C~~c~~e~~~rr~~~~~~~ 1170 (1404)
T KOG1245|consen 1106 AVNALCKVCRRK--KQDEKMLLCDECLSGFHLFCLRPALSSV--------PPGDWMCPSCRKEHRARRQKRFRKE 1170 (1404)
T ss_pred cchhhhhhhhhc--ccchhhhhhHhhhhhHHHHhhhhhhccC--------CcCCccCCccchhhhhhhhhhhhcc
Confidence 456699999954 4468999999999999999998866432 789999999998753 444555544
No 162
>PF00152 tRNA-synt_2: tRNA synthetases class II (D, K and N) ; InterPro: IPR004364 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry includes the asparagine, aspartic acid and lysine tRNA synthetases.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1N9W_B 1BBU_A 1BBW_A 4EX5_B 3E9I_A 3E9H_C 3A74_C 1NNH_A 3M4P_C 3M4Q_B ....
Probab=77.75 E-value=3.5 Score=47.76 Aligned_cols=71 Identities=18% Similarity=0.265 Sum_probs=46.9
Q ss_pred CCCCCeeEecCChHHHHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHHHHH
Q psy11602 16 DELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESWKM 95 (1083)
Q Consensus 16 r~~~~~~L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s~~~ 95 (1083)
-.+.+.+|..+.|..+=-+.+.- + -++|+|++|||+|.... -...-||+|.|.|....+. ++..+.
T Consensus 70 ~~~~~~~L~~Spql~~k~ll~~g------~-~~vf~i~~~FR~E~~~~------~rHl~EFtmLE~e~a~~~~-~~lm~~ 135 (335)
T PF00152_consen 70 YFGEPAYLTQSPQLYLKRLLAAG------L-ERVFEIGPCFRNEESRT------RRHLPEFTMLEWEMAFADY-DDLMDL 135 (335)
T ss_dssp ETTEEEEE-SSSHHHHHHHHHTT------H-SEEEEEEEEE-BSSSCB------TTBSSEEEEEEEEEETSSH-HHHHHH
T ss_pred hcccceecCcChHHHHhhhcccc------c-hhhhheecceeccCccc------ccchhhhhhhhhccccCcH-HHhHHH
Confidence 45567889999996665444432 1 36999999999998422 2256799999999987666 344444
Q ss_pred HHHHH
Q psy11602 96 LDEMI 100 (1083)
Q Consensus 96 ~~~~~ 100 (1083)
.+.++
T Consensus 136 ~e~li 140 (335)
T PF00152_consen 136 IEELI 140 (335)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44444
No 163
>cd00776 AsxRS_core Asx tRNA synthetase (AspRS/AsnRS) class II core domain. Assignment to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs in the core domain. This family includes AsnRS as well as a subgroup of AspRS. AsnRS and AspRS are homodimers, which attach either asparagine or aspartate to the 3'OH group of ribose of the appropriate tRNA. While archaea lack asnRS, they possess a non-discriminating aspRS, which can mischarge Asp-tRNA with Asn. Subsequently, a tRNA-dependent aspartate amidotransferase converts the bound aspartate to asparagine. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate.
Probab=77.04 E-value=4.3 Score=46.94 Aligned_cols=73 Identities=16% Similarity=0.132 Sum_probs=49.0
Q ss_pred CCCCCCeeEecCChHHHHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHHHH
Q psy11602 15 KDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESWK 94 (1083)
Q Consensus 15 dr~~~~~~L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s~~ 94 (1083)
|-.+.+++|.-+.|-.+=-+... -=++|+|+++||+|... + --...||+|.|.|.......++..+
T Consensus 66 ~~~~~~~yL~~Spql~lk~l~~~--------~~~vf~i~~~FR~E~~~----~--~rHl~EFtmlE~e~~~~~~~~dlm~ 131 (322)
T cd00776 66 SYFGKPAYLAQSPQLYKEMLIAA--------LERVYEIGPVFRAEKSN----T--RRHLSEFWMLEAEMAFIEDYNEVMD 131 (322)
T ss_pred ccCCCcceecCCHHHHHHHHHHh--------hhhhEEeccccccCCCC----c--CCCcceeeccceeeeccCCHHHHHH
Confidence 34567889987777544333332 13689999999999732 1 1367899999999887644455666
Q ss_pred HHHHHHH
Q psy11602 95 MLDEMIQ 101 (1083)
Q Consensus 95 ~~~~~~~ 101 (1083)
..++|+.
T Consensus 132 ~~e~ll~ 138 (322)
T cd00776 132 LIEELIK 138 (322)
T ss_pred HHHHHHH
Confidence 6555553
No 164
>PF00130 C1_1: Phorbol esters/diacylglycerol binding domain (C1 domain); InterPro: IPR002219 Diacylglycerol (DAG) is an important second messenger. Phorbol esters (PE) are analogues of DAG and potent tumour promoters that cause a variety of physiological changes when administered to both cells and tissues. DAG activates a family of serine/threonine protein kinases, collectively known as protein kinase C (PKC) []. Phorbol esters can directly stimulate PKC. The N-terminal region of PKC, known as C1, has been shown [] to bind PE and DAG in a phospholipid and zinc-dependent fashion. The C1 region contains one or two copies (depending on the isozyme of PKC) of a cysteine-rich domain, which is about 50 amino-acid residues long, and which is essential for DAG/PE-binding. The DAG/PE-binding domain binds two zinc ions; the ligands of these metal ions are probably the six cysteines and two histidines that are conserved in this domain.; GO: 0035556 intracellular signal transduction; PDB: 1RFH_A 2FNF_X 3PFQ_A 1PTQ_A 1PTR_A 2VRW_B 1XA6_A 2ENN_A 1TBN_A 1TBO_A ....
Probab=76.62 E-value=2.1 Score=35.70 Aligned_cols=38 Identities=26% Similarity=0.370 Sum_probs=28.7
Q ss_pred CCCccccccCCCCCCCCCcEEEcccCCccccccccccc
Q psy11602 689 SKILVCCVCLGERSDDVNEIVECDSCGVTVHEGCYGVQ 726 (1083)
Q Consensus 689 ~~~~~C~VC~~~~~~~~n~iv~Cd~C~i~VH~~CYGv~ 726 (1083)
.....|++|...-.....+-+.|..|++.||..|....
T Consensus 9 ~~~~~C~~C~~~i~g~~~~g~~C~~C~~~~H~~C~~~~ 46 (53)
T PF00130_consen 9 SKPTYCDVCGKFIWGLGKQGYRCSWCGLVCHKKCLSKV 46 (53)
T ss_dssp SSTEB-TTSSSBECSSSSCEEEETTTT-EEETTGGCTS
T ss_pred CCCCCCcccCcccCCCCCCeEEECCCCChHhhhhhhhc
Confidence 45569999997653457899999999999999997643
No 165
>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain
Probab=75.88 E-value=7.2 Score=40.70 Aligned_cols=129 Identities=19% Similarity=0.217 Sum_probs=72.1
Q ss_pred cccccccccCCCCCcceeecccccccccccCCCccceeeeccccc-ccccccccccccccCCCCCCcccccccccccccc
Q psy11602 547 ICAVHRDSWLPEASLPIRYLGVSTCFRQECDAGMCRTYFHVTCAQ-REGLLSEATSEEVDQADPFYAHCRLHADKLEDFS 625 (1083)
Q Consensus 547 ~c~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~c~~~~H~~ca~-~~g~~~e~~~~~~~~~~p~~~~c~~h~~k~~~~~ 625 (1083)
.|+.|+..-..+..+++ =||++|. .-+|-.|-- +++ ++|. .+..
T Consensus 1 ~C~~C~~~g~~~~kG~L-------v~CQGCs-----~sYHk~CLG~Rs~--------------------ReHl---VTKV 45 (175)
T PF15446_consen 1 TCDTCGYEGDDRNKGPL-------VYCQGCS-----SSYHKACLGPRSQ--------------------REHL---VTKV 45 (175)
T ss_pred CcccccCCCCCccCCCe-------EEcCccC-----hHHHhhhcCCccc--------------------ccee---eEEE
Confidence 37788644344444444 2566666 999988843 222 3332 1223
Q ss_pred cCCCce-eeccccCCCCCCCCc---eeeccCCCCcccccc--------hhhhHHHHHHhhhhcccceecccccCCCCCcc
Q psy11602 626 KFSKIL-VCCVCLGERSDDVNE---IVECDSCGVTVHEVK--------IQQEFLAIKFLIRYLLFWFQLEDFSKFSKILV 693 (1083)
Q Consensus 626 ~~~~~~-~c~~c~g~~~~~~~~---l~~C~~Cg~~~h~~~--------~~~~~~~i~~~~~~~~~W~~~~d~~~~~~~~~ 693 (1083)
+++... -|-.|+|-+..+-.+ +-.|..|...+.+.. .|++.....+ .. .|. +
T Consensus 46 g~d~FVLQCr~Cig~~~kKD~~aP~~~~C~~C~~~G~~c~pfr~r~T~kQEe~~ReeN--gG-------~DP-------i 109 (175)
T PF15446_consen 46 GDDDFVLQCRRCIGIAHKKDPRAPHHGMCQQCKKPGPSCKPFRPRKTPKQEEKLREEN--GG-------VDP-------I 109 (175)
T ss_pred cCCceEEechhhcChhhcccCCCCCCCcccccCCCCCCCcccCCCCCcHHHHHHHHHc--CC-------CCC-------C
Confidence 445544 499999987766555 899999988775421 2222111111 11 011 1
Q ss_pred ccccCCCCCCCCCcEEEcccCCccccccccccc
Q psy11602 694 CCVCLGERSDDVNEIVECDSCGVTVHEGCYGVQ 726 (1083)
Q Consensus 694 C~VC~~~~~~~~n~iv~Cd~C~i~VH~~CYGv~ 726 (1083)
=.|=..--...+|-|..|..|..+.|..-.-..
T Consensus 110 t~Vd~~lvnN~~nVLFRC~~C~RawH~~HLP~~ 142 (175)
T PF15446_consen 110 TPVDPELVNNPDNVLFRCTSCHRAWHFEHLPPP 142 (175)
T ss_pred ccCCHHHccChhheEEecCCccceeehhhCCCC
Confidence 111001112257889999999999998886553
No 166
>cd00777 AspRS_core Asp tRNA synthetase (aspRS) class II core domain. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. AspRS is a homodimer, which attaches a specific amino acid to the 3' OH group of ribose of the appropriate tRNA. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. AspRS in this family differ from those found in the AsxRS family by a GAD insert in the core domain.
Probab=74.96 E-value=3.9 Score=46.41 Aligned_cols=46 Identities=17% Similarity=0.460 Sum_probs=34.6
Q ss_pred eEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHHHHHHHHHHH
Q psy11602 48 RYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESWKMLDEMIQ 101 (1083)
Q Consensus 48 klyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s~~~~~~~~~ 101 (1083)
|+|+|+++||+|....+ |..||+|.|.+....+- ++..+..++|+.
T Consensus 71 ~v~~i~~~fR~e~~~~~-------r~~Ef~~~e~e~~~~~~-~dlm~~~e~li~ 116 (280)
T cd00777 71 RYFQIARCFRDEDLRAD-------RQPEFTQIDIEMSFVDQ-EDIMSLIEGLLK 116 (280)
T ss_pred cEEEeccceeCCCCCCC-------ccceeEEeEeeeccCCH-HHHHHHHHHHHH
Confidence 79999999999994333 66799999999876643 556666666653
No 167
>PTZ00326 phenylalanyl-tRNA synthetase alpha chain; Provisional
Probab=74.58 E-value=11 Score=46.14 Aligned_cols=120 Identities=17% Similarity=0.230 Sum_probs=80.1
Q ss_pred hhhcccccccccccCcCceeEEEeeeEEEEEEeCCCchhHHHHHHHHHHHHHHHHHHhCCcEEEEeccCCCcchhhhcee
Q psy11602 290 EMIQNSEEFYADLDTRGIFRVHQFEKVEQFVLTSPHDDESWKTLDEMIQNSEEFYADLGIAYRVVNIVSGALNHAAAKKL 369 (1083)
Q Consensus 290 ~~~~~~~~~~~~~~trGl~Rvhqf~kvE~f~~~~~~~~~s~~~~e~~~~~~e~~~~~L~lpyRvv~~~~~dl~~~a~~~~ 369 (1083)
+++...++||....-++ |.++|+.+|-+++-..- .+.+|+..+.+||+.||+. .+--.|+ -++=-.=.+
T Consensus 359 k~fsigrVfR~d~~Dat--H~~eFhQ~Eg~vi~~~~------s~~~L~~~l~~f~~~lG~~-~~RfrP~--yfPfTEPS~ 427 (494)
T PTZ00326 359 KYFSIDRVFRNETLDAT--HLAEFHQVEGFVIDRNL------TLGDLIGTIREFFRRIGIT-KLRFKPA--FNPYTEPSM 427 (494)
T ss_pred eEEecCCEecCCCCCCC--cCceeEEEEEEEEeCCC------CHHHHHHHHHHHHHhcCCC-ceEEecC--CCCCCCCee
Confidence 45556668887664444 66789999999886553 3578999999999999872 2222222 333334468
Q ss_pred eEEEeeCCCCcEEeeecccCcccccccccceEEecccCCCCceeeEEeecccccchhHHHHHH
Q psy11602 370 DLEAWFPGSGAFRELVSCSNCLAYQSRRLLVRYGQTKKMNEKIEFVHMLNATACATTRVICAI 432 (1083)
Q Consensus 370 DiE~w~P~~~~y~Ev~S~sn~~d~qarrl~iry~~~~~~~~~~~~~htln~t~~a~~R~i~ai 432 (1083)
.+++|.|+.++|.||..|..+.--.=+.++| +. .+ +.=+-|+.+.|+....
T Consensus 428 Ev~v~~~~~gkWIEIgg~Gm~rpevL~~~Gi---~~-------~~--~~~A~GlGleRlaMi~ 478 (494)
T PTZ00326 428 EIFGYHPGLKKWVEVGNSGIFRPEMLRPMGF---PE-------DV--TVIAWGLSLERPTMIK 478 (494)
T ss_pred EEEEEecCCCcEEEEeCcCccCHHHHHhcCC---CC-------cc--eEEEEEecHHHHHHHH
Confidence 8999999999999999888766222344555 11 11 2227788899976543
No 168
>cd00775 LysRS_core Lys_tRNA synthetase (LysRS) class II core domain. Class II LysRS is a dimer which attaches a lysine to the 3' OH group of ribose of the appropriate tRNA. Its assignment to class II aaRS is based upon its structure and the presence of three characteristic sequence motifs in the core domain. It is found in eukaryotes as well as some prokaryotes and archaea. However, LysRS belongs to class I aaRS's in some prokaryotes and archaea. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate.
Probab=74.18 E-value=7.8 Score=45.01 Aligned_cols=71 Identities=14% Similarity=0.137 Sum_probs=47.3
Q ss_pred CCCCCCeeEecCChHHHHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHHHH
Q psy11602 15 KDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESWK 94 (1083)
Q Consensus 15 dr~~~~~~L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s~~ 94 (1083)
+..+...+|.-.+|..+=-+.+. .+ -++|+|+++||+|... + .+.-||+|.|.|....+. ++..+
T Consensus 52 ~~~~~~~yL~~Spql~~k~ll~~------g~-~~vf~i~~~FR~E~~~----~---rHl~EFt~le~e~~~~~~-~~~m~ 116 (329)
T cd00775 52 NALDMDLYLRIAPELYLKRLIVG------GF-ERVYEIGRNFRNEGID----L---THNPEFTMIEFYEAYADY-NDMMD 116 (329)
T ss_pred CCCCcceeeccCHHHHHHHHHhc------CC-CcEEEEeccccCCCCC----C---CCCCceEEEEEeeecCCH-HHHHH
Confidence 34577889987777544333221 12 4799999999999832 1 478899999999766533 45555
Q ss_pred HHHHHH
Q psy11602 95 MLDEMI 100 (1083)
Q Consensus 95 ~~~~~~ 100 (1083)
..++++
T Consensus 117 ~~e~li 122 (329)
T cd00775 117 LTEDLF 122 (329)
T ss_pred HHHHHH
Confidence 555554
No 169
>cd00029 C1 Protein kinase C conserved region 1 (C1) . Cysteine-rich zinc binding domain. Some members of this domain family bind phorbol esters and diacylglycerol, some are reported to bind RasGTP. May occur in tandem arrangement. Diacylglycerol (DAG) is a second messenger, released by activation of Phospholipase D. Phorbol Esters (PE) can act as analogues of DAG and mimic its downstream effects in, for example, tumor promotion. Protein Kinases C are activated by DAG/PE, this activation is mediated by their N-terminal conserved region (C1). DAG/PE binding may be phospholipid dependent. C1 domains may also mediate DAG/PE signals in chimaerins (a family of Rac GTPase activating proteins), RasGRPs (exchange factors for Ras/Rap1), and Munc13 isoforms (scaffolding proteins involved in exocytosis).
Probab=74.09 E-value=2 Score=35.03 Aligned_cols=36 Identities=25% Similarity=0.432 Sum_probs=28.1
Q ss_pred CCccccccCCCCCCCCCcEEEcccCCcccccccccc
Q psy11602 690 KILVCCVCLGERSDDVNEIVECDSCGVTVHEGCYGV 725 (1083)
Q Consensus 690 ~~~~C~VC~~~~~~~~n~iv~Cd~C~i~VH~~CYGv 725 (1083)
....|++|...-..-..+-+.|+.|++.||..|..-
T Consensus 10 ~~~~C~~C~~~i~~~~~~~~~C~~C~~~~H~~C~~~ 45 (50)
T cd00029 10 KPTFCDVCRKSIWGLFKQGLRCSWCKVKCHKKCADK 45 (50)
T ss_pred CCCChhhcchhhhccccceeEcCCCCCchhhhhhcc
Confidence 345899998654433368899999999999999754
No 170
>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]
Probab=74.05 E-value=1.8 Score=47.58 Aligned_cols=43 Identities=28% Similarity=0.901 Sum_probs=34.6
Q ss_pred cccCCCCCCCCCcEEEccc--CCc-ccccccccccccCCCcccCCCCCCCCcccccccC
Q psy11602 695 CVCLGERSDDVNEIVECDS--CGV-TVHEGCYGVQDTASISSTVSSCSTEPWFCESCRA 750 (1083)
Q Consensus 695 ~VC~~~~~~~~n~iv~Cd~--C~i-~VH~~CYGv~~~~~~~~~~~~~~~~~W~Cd~C~~ 750 (1083)
|-|.+.. -.+||-||+ |.. =+|..|-|+... |.|.|+|+-|+.
T Consensus 224 CfCqqvS---yGqMVaCDn~nCkrEWFH~~CVGLk~p----------PKG~WYC~eCk~ 269 (271)
T COG5034 224 CFCQQVS---YGQMVACDNANCKREWFHLECVGLKEP----------PKGKWYCPECKK 269 (271)
T ss_pred EEecccc---cccceecCCCCCchhheeccccccCCC----------CCCcEeCHHhHh
Confidence 3576542 469999997 876 489999999876 789999999974
No 171
>cd00496 PheRS_alpha_core Phenylalanyl-tRNA synthetase (PheRS) alpha chain catalytic core domain. PheRS belongs to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. While class II aaRSs generally aminoacylate the 3'-OH ribose of the appropriate tRNA, PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. PheRS is an alpha-2/ beta-2 tetramer.
Probab=73.35 E-value=41 Score=36.57 Aligned_cols=73 Identities=16% Similarity=0.256 Sum_probs=51.9
Q ss_pred eeEecCChHHHHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHHHHHHHHHH
Q psy11602 21 KYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESWKMLDEMI 100 (1083)
Q Consensus 21 ~~L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s~~~~~~~~ 100 (1083)
-+|++|-=-.+....+.. ..|++++.++++||.+... . + +..||.+........+. -|.++.
T Consensus 60 ~~LR~sLlp~LL~~l~~N-----~~~~~lFEiG~Vf~~~~~~----~-~--~~~E~~~l~~~~~g~~~------df~dlk 121 (218)
T cd00496 60 LLLRTHTSAVQARALAKL-----KPPIRIFSIGRVYRNDEID----A-T--HLPEFHQIEGLVVDKGL------TFADLK 121 (218)
T ss_pred EEEeccCcHHHHHHHHhc-----CCCeeEEEEcCeEECCCCC----C-C--cCCccEEEEEEEECCCC------CHHHHH
Confidence 466666655555544433 7799999999999987521 1 1 12399988877666432 388899
Q ss_pred HHHHHHHHHcC
Q psy11602 101 QNSEEFYADLG 111 (1083)
Q Consensus 101 ~~y~~if~~Lg 111 (1083)
.+.+.+++.||
T Consensus 122 g~ve~ll~~l~ 132 (218)
T cd00496 122 GTLEEFAKELF 132 (218)
T ss_pred HHHHHHHHHhc
Confidence 99999999999
No 172
>PLN02502 lysyl-tRNA synthetase
Probab=72.29 E-value=2.9 Score=51.77 Aligned_cols=69 Identities=19% Similarity=0.189 Sum_probs=48.4
Q ss_pred CCCCeeEecCChHHHHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHHHHHH
Q psy11602 17 ELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESWKML 96 (1083)
Q Consensus 17 ~~~~~~L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s~~~~ 96 (1083)
.+.++||+=+.|..+=-++..- + =|+|+|+++||+|-. ++ -+.-||+|.|.|....+- ++..+..
T Consensus 275 ~~~~~yL~~Spel~lK~L~v~g-~------~rVfeIg~~FRnE~~----~~---rH~pEFtmlE~y~a~~d~-~dlm~~~ 339 (553)
T PLN02502 275 LNMDLYLRIATELHLKRLVVGG-F------ERVYEIGRQFRNEGI----ST---RHNPEFTTCEFYQAYADY-NDMMELT 339 (553)
T ss_pred CCcceeeecCHHHHHHHHHHhc-c------CCEEEEcCeeeCCCC----CC---ccccceeehhhhhhcCCH-HHHHHHH
Confidence 4678899888885543333221 1 379999999999983 33 588999999999776644 5566666
Q ss_pred HHHH
Q psy11602 97 DEMI 100 (1083)
Q Consensus 97 ~~~~ 100 (1083)
++|+
T Consensus 340 E~li 343 (553)
T PLN02502 340 EEMV 343 (553)
T ss_pred HHHH
Confidence 6665
No 173
>TIGR00462 genX lysyl-tRNA synthetase-like protein GenX. Many Gram-negative bacteria have a protein closely homologous to the C-terminal region of lysyl-tRNA synthetase (LysS). Multiple sequence alignment of these proteins with the homologous regions of collected LysS proteins shows that these proteins form a distinct set rather than just similar truncations of LysS. The protein is termed GenX after its designation in E. coli. Interestingly, genX often is located near a homolog of lysine-2,3-aminomutase. Its function is unknown.
Probab=72.02 E-value=1.5 Score=50.27 Aligned_cols=82 Identities=12% Similarity=0.118 Sum_probs=50.0
Q ss_pred CCCCeeEecCChHHHHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHHHHHH
Q psy11602 17 ELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESWKML 96 (1083)
Q Consensus 17 ~~~~~~L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s~~~~ 96 (1083)
.+.+.+|.-..|-.+=-++. + .+ =|+|+|+++||+|..+ . -+.-||+|.|.|....+- ++..+..
T Consensus 51 ~~~~~yL~~Spql~lk~ll~----~--g~-~rVfeigp~FRaE~~~----~---rHl~EFtmLE~e~~~~d~-~d~m~~~ 115 (304)
T TIGR00462 51 EGRPLYLQTSPEYAMKRLLA----A--GS-GPIFQICKVFRNGERG----R---RHNPEFTMLEWYRPGFDY-HDLMDEV 115 (304)
T ss_pred CCcceeeecCHHHHHHHHHh----c--cC-CCEEEEcCceeCCCCC----C---CcccHHHhHHHHHHcCCH-HHHHHHH
Confidence 35678998888854432222 1 12 4799999999999942 1 368899999998655432 3444444
Q ss_pred HHHHHHHHHHHHHcCCceEE
Q psy11602 97 DEMIQNSEEFYADLGIAYRV 116 (1083)
Q Consensus 97 ~~~~~~y~~if~~LgLpyrv 116 (1083)
+.++ ..+++.+..||..
T Consensus 116 e~li---~~i~~~~~~~~~~ 132 (304)
T TIGR00462 116 EALL---QELLGDPFAPWER 132 (304)
T ss_pred HHHH---HHHHHhcCCCcEE
Confidence 4443 3444443344443
No 174
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=71.78 E-value=2.1 Score=36.51 Aligned_cols=33 Identities=24% Similarity=0.636 Sum_probs=27.9
Q ss_pred ccccccccCCCC-CCcceecCccCCCccccCCCC
Q psy11602 1037 SHKCGLCHLSHD-PHTMAKCDTCHLYYHLACLDP 1069 (1083)
Q Consensus 1037 ~~~c~~C~~~~~-~~~~~~Cd~C~~~yH~~Cl~P 1069 (1083)
-..|.+|++.-. .+.++.|..|...||-.|-++
T Consensus 5 ~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~ 38 (54)
T PF14446_consen 5 GCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK 38 (54)
T ss_pred CccChhhCCcccCCCCEEECCCCCCcccHHHHhh
Confidence 457999998874 788999999999999988654
No 175
>TIGR00458 aspS_arch aspartyl-tRNA synthetase, archaeal type. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_arch, represents aspartyl-tRNA synthetases from the eukaryotic cytosol and from the Archaea. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn).
Probab=71.68 E-value=5.1 Score=48.21 Aligned_cols=72 Identities=13% Similarity=0.166 Sum_probs=45.8
Q ss_pred CCCCCCeeEecCChHHHHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHHHH
Q psy11602 15 KDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESWK 94 (1083)
Q Consensus 15 dr~~~~~~L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s~~ 94 (1083)
+..+.+++|.-..|..+=-+++. .+ =|+|+|+++||+|-.. |. -..-||+|.|.|....+. ++..+
T Consensus 175 ~~~~~~~yL~~Spql~~q~li~~------g~-~rVf~i~~~FR~E~~~----t~--rHl~EFt~lE~e~a~~~~-~dlm~ 240 (428)
T TIGR00458 175 TYFEREAFLGQSPQLYKQQLMAA------GF-ERVYEIGPIFRAEEHN----TH--RHLNEATSIDIEMAFEDH-HDVMD 240 (428)
T ss_pred EecCCcEEECcCHHHHHHHHHhc------cc-CcEEEEecccccCCCC----Cc--cchheeeEeeeeeccCCH-HHHHH
Confidence 34567788766655333222221 11 3799999999999842 21 145699999999876654 55666
Q ss_pred HHHHHH
Q psy11602 95 MLDEMI 100 (1083)
Q Consensus 95 ~~~~~~ 100 (1083)
..++|+
T Consensus 241 ~~e~li 246 (428)
T TIGR00458 241 ILEELV 246 (428)
T ss_pred HHHHHH
Confidence 666665
No 176
>PTZ00417 lysine-tRNA ligase; Provisional
Probab=71.34 E-value=8.1 Score=48.20 Aligned_cols=69 Identities=17% Similarity=0.171 Sum_probs=48.8
Q ss_pred CCCCeeEecCChHHHHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHHHHHH
Q psy11602 17 ELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESWKML 96 (1083)
Q Consensus 17 ~~~~~~L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s~~~~ 96 (1083)
.+.++||+-+.|..+=-|...- + =|+|+|+++||+|.- ++ -+.-||+|.|.|....+- ++..+..
T Consensus 299 ~d~~lYLriSpEL~lKrLlvgG------~-~rVfeIgp~FRnE~~----~~---rHnpEFTmlE~y~ay~dy-~dlM~l~ 363 (585)
T PTZ00417 299 LDLDLYLRIATELPLKMLIVGG------I-DKVYEIGKVFRNEGI----DN---THNPEFTSCEFYWAYADF-YDLIKWS 363 (585)
T ss_pred CCcceEEeecHHHHHHHHHHhC------C-CCEEEEcccccCCCC----CC---CccceeeeeeeeeecCCH-HHHHHHH
Confidence 4567899988886655444322 1 379999999999983 22 377899999999876543 5566555
Q ss_pred HHHH
Q psy11602 97 DEMI 100 (1083)
Q Consensus 97 ~~~~ 100 (1083)
++++
T Consensus 364 E~Li 367 (585)
T PTZ00417 364 EDFF 367 (585)
T ss_pred HHHH
Confidence 5555
No 177
>PRK12445 lysyl-tRNA synthetase; Reviewed
Probab=71.20 E-value=4.5 Score=49.68 Aligned_cols=71 Identities=15% Similarity=0.165 Sum_probs=48.7
Q ss_pred CCCCCeeEecCChHHHHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHHHHH
Q psy11602 16 DELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESWKM 95 (1083)
Q Consensus 16 r~~~~~~L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s~~~ 95 (1083)
-.+.++||+=..|..+=-++..- + =|+|+|+++||+|--+ --+.-||+|.|.|....+- ++..+.
T Consensus 229 ~~~~~~yL~~SpELylKrlivgG------~-~rVfeIg~~FRnE~~~-------~rH~pEFTmlE~y~a~~d~-~d~m~l 293 (505)
T PRK12445 229 ALDLDMYLRIAPELYLKRLVVGG------F-ERVFEINRNFRNEGIS-------VRHNPEFTMMELYMAYADY-HDLIEL 293 (505)
T ss_pred cCCcceeeecCHHHHHHHHHhcc------C-CcEEEEehhccCCCCC-------CCcCcccceeeeeeecCCH-HHHHHH
Confidence 35678899888875443333211 1 3799999999999831 2478899999999987644 556666
Q ss_pred HHHHHH
Q psy11602 96 LDEMIQ 101 (1083)
Q Consensus 96 ~~~~~~ 101 (1083)
.++|+.
T Consensus 294 ~E~li~ 299 (505)
T PRK12445 294 TESLFR 299 (505)
T ss_pred HHHHHH
Confidence 666553
No 178
>cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=70.79 E-value=2.6 Score=43.23 Aligned_cols=28 Identities=18% Similarity=0.419 Sum_probs=23.3
Q ss_pred ccccccccccccCCCcccCCCCCCCCcccccccCCC
Q psy11602 717 TVHEGCYGVQDTASISSTVSSCSTEPWFCESCRAGI 752 (1083)
Q Consensus 717 ~VH~~CYGv~~~~~~~~~~~~~~~~~W~Cd~C~~~~ 752 (1083)
++|..|..++.... |+|.|+|..|....
T Consensus 1 g~H~~CL~Ppl~~~--------P~g~W~Cp~C~~~~ 28 (148)
T cd04718 1 GFHLCCLRPPLKEV--------PEGDWICPFCEVEK 28 (148)
T ss_pred CcccccCCCCCCCC--------CCCCcCCCCCcCCC
Confidence 58999999877533 89999999999865
No 179
>PRK06462 asparagine synthetase A; Reviewed
Probab=69.75 E-value=4.6 Score=47.00 Aligned_cols=73 Identities=15% Similarity=0.093 Sum_probs=46.9
Q ss_pred CCCCCCeeEecCChHHHHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHHHH
Q psy11602 15 KDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESWK 94 (1083)
Q Consensus 15 dr~~~~~~L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s~~ 94 (1083)
|-.+.+++|....|-- -.+...- + =++|+|+++||+|.... -+=-...||+|.|.|....+- ++..+
T Consensus 79 ~~~~~~~yL~~Spql~-k~ll~~g------~-~rVfeI~p~FR~E~~~~----~~~rHl~EFtmlE~e~~~~d~-~dlm~ 145 (335)
T PRK06462 79 DFYGVEYYLADSMILH-KQLALRM------L-GKIFYLSPNFRLEPVDK----DTGRHLYEFTQLDIEIEGADL-DEVMD 145 (335)
T ss_pred ccCCCceeeccCHHHH-HHHHHhh------c-CcEEEEeccccCCCCCC----CCCCCCCchheeeehhhcCCH-HHHHH
Confidence 3456788887777643 2222211 2 47999999999998432 112368899999999766443 55555
Q ss_pred HHHHHH
Q psy11602 95 MLDEMI 100 (1083)
Q Consensus 95 ~~~~~~ 100 (1083)
..++++
T Consensus 146 ~~e~lv 151 (335)
T PRK06462 146 LIEDLI 151 (335)
T ss_pred HHHHHH
Confidence 555555
No 180
>PRK05159 aspC aspartyl-tRNA synthetase; Provisional
Probab=68.44 E-value=6.4 Score=47.49 Aligned_cols=73 Identities=10% Similarity=0.177 Sum_probs=46.5
Q ss_pred CCCCCCeeEecCChHHHHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHHHH
Q psy11602 15 KDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESWK 94 (1083)
Q Consensus 15 dr~~~~~~L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s~~ 94 (1083)
+-.+..++|.-+.|.-+=-+... .+ =|+|+|+++||+|..... -..-||+|.|.|....+..++..+
T Consensus 178 ~~~~~~~~L~~Spql~~q~l~~~------g~-~rVf~i~~~FR~E~~~t~------rHl~EFt~lE~e~a~~~~~~~lm~ 244 (437)
T PRK05159 178 DYFEKEAYLAQSPQLYKQMMVGA------GF-ERVFEIGPVFRAEEHNTS------RHLNEYTSIDVEMGFIDDHEDVMD 244 (437)
T ss_pred EecCCceEecCCHHHHHHHHHhc------CC-CcEEEEeceeeCCCCCCc------ccchhhheeeeeeeecccHHHHHH
Confidence 44567788876666433222211 11 379999999999994321 135699999999766653355666
Q ss_pred HHHHHH
Q psy11602 95 MLDEMI 100 (1083)
Q Consensus 95 ~~~~~~ 100 (1083)
..++++
T Consensus 245 ~~e~lv 250 (437)
T PRK05159 245 LLENLL 250 (437)
T ss_pred HHHHHH
Confidence 666555
No 181
>TIGR00499 lysS_bact lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial. This model represents the lysyl-tRNA synthetases that are class II amino-acyl tRNA synthetases. It includes all eukaryotic and most bacterial examples of the enzyme, but not archaeal or spirochete forms.
Probab=68.37 E-value=3.6 Score=50.35 Aligned_cols=70 Identities=16% Similarity=0.170 Sum_probs=48.7
Q ss_pred CCCCeeEecCChHHHHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHHHHHH
Q psy11602 17 ELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESWKML 96 (1083)
Q Consensus 17 ~~~~~~L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s~~~~ 96 (1083)
.+.++||+-+.|..+=-+...- + =|+|+|+++||+|-. ++ -+.-||+|.|.|....+- ++..+..
T Consensus 218 ~~~~~yLriSpELylKrlivgG------~-~rVfeIg~~FRnE~~----~~---rH~pEFTmlE~y~a~~d~-~dlm~~~ 282 (496)
T TIGR00499 218 LDMDLYLRIAPELYLKRLIVGG------F-EKVYEIGRNFRNEGV----DT---THNPEFTMIEFYQAYADY-EDLMDLT 282 (496)
T ss_pred CCCceEEecCHHHHHHHHHhCC------C-CceEEEecceecCCC----CC---cccchhheeehhhhcCCH-HHHHHHH
Confidence 4678899988885553333211 1 379999999999983 33 478899999999876643 5566666
Q ss_pred HHHHH
Q psy11602 97 DEMIQ 101 (1083)
Q Consensus 97 ~~~~~ 101 (1083)
++|+.
T Consensus 283 E~li~ 287 (496)
T TIGR00499 283 ENLFK 287 (496)
T ss_pred HHHHH
Confidence 65553
No 182
>KOG1169|consensus
Probab=68.26 E-value=3.9 Score=50.66 Aligned_cols=92 Identities=29% Similarity=0.416 Sum_probs=55.0
Q ss_pred eeccccCCCCCCCCceeeccCCCCcccccchhhhHHHHHH------hhh---hcccceecccccCCCCCccccccCCCC-
Q psy11602 632 VCCVCLGERSDDVNEIVECDSCGVTVHEVKIQQEFLAIKF------LIR---YLLFWFQLEDFSKFSKILVCCVCLGER- 701 (1083)
Q Consensus 632 ~c~~c~g~~~~~~~~l~~C~~Cg~~~h~~~~~~~~~~i~~------~~~---~~~~W~~~~d~~~~~~~~~C~VC~~~~- 701 (1083)
+|++|+. .. --.-+.|+-||..+|..|..--...++. ..+ ....|+.-++ .++....|.+|...=
T Consensus 46 ~~~~~~~--~~-~~~~~~~~~~g~~~~~~~~~~~~s~~~~~~~~~~~~~~~k~~~~~~~~~~--~~~~~~~c~~c~~~c~ 120 (634)
T KOG1169|consen 46 VCCVCLW--SE-MAPSVDCDVDGGVSHEECVSGAASDCPLLVLLGFENQRHKTDGDHVWRPK--HLWKPAYCFVCPKSCG 120 (634)
T ss_pred hhhhhhh--cc-cccccceeccccchhhhhhcccccchHHHHHHHhhhhhhhccCceeccCC--CCCCCceEEecccccc
Confidence 6999977 11 1115788899999988764421111111 111 1112333222 246667888886542
Q ss_pred -C-CCCCcEEEcccCCccccccccccccc
Q psy11602 702 -S-DDVNEIVECDSCGVTVHEGCYGVQDT 728 (1083)
Q Consensus 702 -~-~~~n~iv~Cd~C~i~VH~~CYGv~~~ 728 (1083)
. ...-+.++|+-|+..||..|++....
T Consensus 121 ~~~~~~~~g~~C~~C~~~vh~~C~~~~~~ 149 (634)
T KOG1169|consen 121 SCGVGIKQGLCCDWCGRTVHERCVRRADP 149 (634)
T ss_pred chhhcccCceeeccccchHHHHHHhhcCc
Confidence 1 12357799999999999999987654
No 183
>KOG1473|consensus
Probab=66.51 E-value=3.2 Score=53.65 Aligned_cols=41 Identities=29% Similarity=0.600 Sum_probs=35.5
Q ss_pred cccccccCCCCCCcceecCccCCCccccCCCCCCCCCCCCCcCC
Q psy11602 1038 HKCGLCHLSHDPHTMAKCDTCHLYYHLACLDPPLLRMPKKTKLM 1081 (1083)
Q Consensus 1038 ~~c~~C~~~~~~~~~~~Cd~C~~~yH~~Cl~Ppl~~~P~~~~~~ 1081 (1083)
..|..|.+-++ ++.|++|...||+-|..||+-.+|+..|.+
T Consensus 345 dhcrf~~d~~~---~lc~Et~prvvhlEcv~hP~~~~~s~~~e~ 385 (1414)
T KOG1473|consen 345 DHCRFCHDLGD---LLCCETCPRVVHLECVFHPRFAVPSAFWEC 385 (1414)
T ss_pred ccccccCcccc---eeecccCCceEEeeecCCccccCCCccchh
Confidence 45777777666 999999999999999999999999988543
No 184
>PTZ00385 lysyl-tRNA synthetase; Provisional
Probab=65.93 E-value=5.8 Score=49.91 Aligned_cols=69 Identities=14% Similarity=0.207 Sum_probs=46.0
Q ss_pred CCCCeeEecCChHHHHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHHHHHH
Q psy11602 17 ELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESWKML 96 (1083)
Q Consensus 17 ~~~~~~L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s~~~~ 96 (1083)
.+.++||+=+.|..+=-++..- + =|+|+|+++||+|-.. + -+.-||+|.|.|....+. ++..+..
T Consensus 279 ~~~~~yL~~SPELylKrLivgG------~-erVyeIg~~FRnE~~~----~---rH~pEFTmlE~y~a~~d~-~d~m~l~ 343 (659)
T PTZ00385 279 NAMDLFLRVAPELHLKQCIVGG------M-ERIYEIGKVFRNEDAD----R---SHNPEFTSCEFYAAYHTY-EDLMPMT 343 (659)
T ss_pred CCCCEEecCChHHHHHHHhhcc------c-CCEEEEeceecCCCCC----C---CccccccceeeeeecCCH-HHHHHHH
Confidence 4677898888885443333211 1 3799999999999832 2 388999999999776543 4444444
Q ss_pred HHHH
Q psy11602 97 DEMI 100 (1083)
Q Consensus 97 ~~~~ 100 (1083)
++++
T Consensus 344 E~li 347 (659)
T PTZ00385 344 EDIF 347 (659)
T ss_pred HHHH
Confidence 4443
No 185
>smart00109 C1 Protein kinase C conserved region 1 (C1) domains (Cysteine-rich domains). Some bind phorbol esters and diacylglycerol. Some bind RasGTP. Zinc-binding domains.
Probab=65.81 E-value=2.7 Score=33.94 Aligned_cols=35 Identities=29% Similarity=0.594 Sum_probs=26.7
Q ss_pred CCccccccCCCCCCCCCcEEEcccCCcccccccccc
Q psy11602 690 KILVCCVCLGERSDDVNEIVECDSCGVTVHEGCYGV 725 (1083)
Q Consensus 690 ~~~~C~VC~~~~~~~~n~iv~Cd~C~i~VH~~CYGv 725 (1083)
....|.+|...-.... +-+.|..|++.||..|...
T Consensus 10 ~~~~C~~C~~~i~~~~-~~~~C~~C~~~~H~~C~~~ 44 (49)
T smart00109 10 KPTKCCVCRKSIWGSF-QGLRCSWCKVKCHKKCAEK 44 (49)
T ss_pred CCCCccccccccCcCC-CCcCCCCCCchHHHHHHhh
Confidence 4558999986543322 5789999999999999654
No 186
>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
Probab=63.65 E-value=3.1 Score=46.96 Aligned_cols=23 Identities=17% Similarity=0.377 Sum_probs=21.0
Q ss_pred ccCCcc-cccccccccCCCCCcce
Q psy11602 541 ATSEQP-ICAVHRDSWLPEASLPI 563 (1083)
Q Consensus 541 ~~~~~~-~c~~~~~~~~~~~~~~~ 563 (1083)
...+|| .|.+|+|||++.-||-|
T Consensus 393 ~~~~KPYrCevC~KRYKNlNGLKY 416 (423)
T COG5189 393 SAKDKPYRCEVCDKRYKNLNGLKY 416 (423)
T ss_pred cccCCceeccccchhhccCcccee
Confidence 456789 89999999999999999
No 187
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=62.53 E-value=3.4 Score=30.73 Aligned_cols=28 Identities=25% Similarity=0.585 Sum_probs=12.6
Q ss_pred cccccCCCCCCCCCcEEEcccCCccccccc
Q psy11602 693 VCCVCLGERSDDVNEIVECDSCGVTVHEGC 722 (1083)
Q Consensus 693 ~C~VC~~~~~~~~n~iv~Cd~C~i~VH~~C 722 (1083)
.|.+|..... .+....|..|+..+|..|
T Consensus 2 ~C~~C~~~~~--~~~~Y~C~~Cdf~lH~~C 29 (30)
T PF07649_consen 2 RCDACGKPID--GGWFYRCSECDFDLHEEC 29 (30)
T ss_dssp --TTTS------S--EEE-TTT-----HHH
T ss_pred cCCcCCCcCC--CCceEECccCCCccChhc
Confidence 6999985433 368999999999999988
No 188
>COG2024 Phenylalanyl-tRNA synthetase alpha subunit (archaeal type) [Translation, ribosomal structure and biogenesis]
Probab=62.14 E-value=12 Score=43.63 Aligned_cols=124 Identities=15% Similarity=0.237 Sum_probs=65.5
Q ss_pred cCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEe---EEEEEEEeCCCchHHHHHHHHHHHHHHHHHHHcCCc--
Q psy11602 39 WLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFE---KVEQFVLTSPHDDESWKMLDEMIQNSEEFYADLGIA-- 113 (1083)
Q Consensus 39 i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~---~~e~~~~~~~~~e~s~~~~~~~~~~y~~if~~LgLp-- 113 (1083)
|+.-+++||+|+.|-+|||+|-+ .+..-|+--|--. +-|..++++. ...++.++.++|..
T Consensus 200 i~~r~~~PlklFSIDRCFRREQ~---ED~shLmtYhSASCVvvde~vtvD~G------------KaVAEglL~qfGFe~F 264 (536)
T COG2024 200 ILKREDPPLKLFSIDRCFRREQR---EDASHLMTYHSASCVVVDEDVTVDDG------------KAVAEGLLRQFGFEKF 264 (536)
T ss_pred HHhccCCCceeeehhHHhhhhhh---cchhhhhhhccceEEEEcCccccccc------------HHHHHHHHHHhCccce
Confidence 45678999999999999999985 4444455544332 1222223322 33456677777764
Q ss_pred -eEEEEeccCCCCcccceeEeEEEEecCCC--------ceeEEEEcCCCchhhhhcccceeccCCCccccccccchhhee
Q psy11602 114 -YRVVNIVSGALNHAAAKKLDLEAWFPGSG--------AFRELVSCSNCLDYQSRRLLVRYGQTKQKIYATACATTRVIC 184 (1083)
Q Consensus 114 -yrvv~~~sgdlg~~as~~~diE~~~P~~~--------~~~ev~s~s~cgdyqs~rl~i~y~~~~~~~n~tg~a~~Rli~ 184 (1083)
||.-+.-|.---++- ...+-++-|... +|+||.+...+.--.-.-++|-| .+-.-|+++.|+.-
T Consensus 265 ~FrpDEK~SKYYvP~T--QTEVyAyHPkL~gs~~kysdgWiEiATFGlYSP~ALaeY~Id~-----pVMNLGlGVERlaM 337 (536)
T COG2024 265 RFRPDEKKSKYYVPGT--QTEVYAYHPKLVGSIEKYSDGWIEIATFGLYSPIALAEYGIDY-----PVMNLGLGVERLAM 337 (536)
T ss_pred eeccccccccccCCCc--cceEEEecccccccccccCCCcEEEEeecccChHHHHHcCCCC-----ceeecchhHHHHHH
Confidence 333222221111111 112334455444 78888886554422222222321 14446888888743
No 189
>TIGR00442 hisS histidyl-tRNA synthetase. This model finds a histidyl-tRNA synthetase in every completed genome. Apparent second copies from Bacillus subtilis, Synechocystis sp., and Aquifex aeolicus are slightly shorter, more closely related to each other than to other hisS proteins, and actually serve as regulatory subunits for an enzyme of histidine biosynthesis. They were excluded from the seed alignment and score much lower than do single copy histidyl-tRNA synthetases of other genomes not included in the seed alignment. These putative second copies of HisS score below the trusted cutoff. The regulatory protein kinase GCN2 of Saccharomyces cerevisiae (YDR283c), and related proteins from other species designated eIF-2 alpha kinase, have a domain closely related to histidyl-tRNA synthetase that may serve to detect and respond to uncharged tRNA(his), an indicator of amino acid starvation; these regulatory proteins are not orthologous and so score below the noise cutoff.
Probab=61.83 E-value=26 Score=41.51 Aligned_cols=66 Identities=23% Similarity=0.259 Sum_probs=42.7
Q ss_pred hh-hhhcccccccccccCcCceeEEEeeeEEEEEEeCCCchhHHHHHHHHHHHHHHHHHHhCCc-EEEEeccCCC
Q psy11602 288 LD-EMIQNSEEFYADLDTRGIFRVHQFEKVEQFVLTSPHDDESWKTLDEMIQNSEEFYADLGIA-YRVVNIVSGA 360 (1083)
Q Consensus 288 ~~-~~~~~~~~~~~~~~trGl~Rvhqf~kvE~f~~~~~~~~~s~~~~e~~~~~~e~~~~~L~lp-yRvv~~~~~d 360 (1083)
+| +++....+||+.+...| |.++|..+..=.+..++ ..++ .|++..+.++|+.||++ +++ .+....
T Consensus 96 ~p~r~~y~g~vfR~e~~~~g--r~ref~Q~g~eiig~~~-~~~d---~E~i~l~~e~l~~lg~~~~~i-~i~~~~ 163 (397)
T TIGR00442 96 KPFKLYYIGPMFRYERPQKG--RYRQFHQFGVEVIGSDS-PLAD---AEIIALAAEILKELGIKDFTL-EINSLG 163 (397)
T ss_pred CCeEEEEEcCeecCCCCCCC--cccceEEcCeeeeCCCC-HHHH---HHHHHHHHHHHHHcCCCceEE-EecCcc
Confidence 44 67777778888766555 66777765444444332 2222 46899999999999997 444 444333
No 190
>PRK12420 histidyl-tRNA synthetase; Provisional
Probab=61.71 E-value=20 Score=42.98 Aligned_cols=63 Identities=19% Similarity=0.246 Sum_probs=44.8
Q ss_pred hh-hhhcccccccccccCcCceeEE-EeeeEEEEEEeCCCchhHHHHHHHHHHHHHHHHHHhCCcEEEEeccC
Q psy11602 288 LD-EMIQNSEEFYADLDTRGIFRVH-QFEKVEQFVLTSPHDDESWKTLDEMIQNSEEFYADLGIAYRVVNIVS 358 (1083)
Q Consensus 288 ~~-~~~~~~~~~~~~~~trGl~Rvh-qf~kvE~f~~~~~~~~~s~~~~e~~~~~~e~~~~~L~lpyRvv~~~~ 358 (1083)
+| +++....+||+....+|-+|.+ |+. ||+|+...+. .+ -|+|..+-++|+.||+.|. +.+..
T Consensus 98 ~p~r~~y~g~vfR~~~~~~gr~rE~~Q~g-~EiiG~~~~~-ad-----aEvi~la~~~l~~lg~~~~-i~l~~ 162 (423)
T PRK12420 98 LPFKRYEIGKVFRDGPIKQGRFREFIQCD-VDIVGVESVM-AE-----AELMSMAFELFRRLNLEVT-IQYNN 162 (423)
T ss_pred CCeeEEEEcceECCCCCCCCccceeEECC-eeeECCCCCc-cc-----HHHHHHHHHHHHHCCCCEE-EEEcC
Confidence 35 6777778999887777755543 444 8999865553 22 5689999999999999874 44443
No 191
>TIGR00457 asnS asparaginyl-tRNA synthetase. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, asnS, represents asparaginyl-tRNA synthetases from the three domains of life. Some species lack this enzyme and charge tRNA(asn) by misacylation with Asp, followed by transamidation of Asp to Asn.
Probab=61.27 E-value=9.2 Score=46.37 Aligned_cols=69 Identities=14% Similarity=0.185 Sum_probs=42.9
Q ss_pred CCCCeeEecCChHHHHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHHHHHH
Q psy11602 17 ELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESWKML 96 (1083)
Q Consensus 17 ~~~~~~L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s~~~~ 96 (1083)
.+.+.+|.-..+.-+= ++ . ..+ =|+|+|+++||+|.. +|. -..-||+|.|.+....+. ++..+..
T Consensus 189 ~~~~~yL~~Spql~lq-~l----~--~g~-~rVf~i~~~FR~E~~----~t~--rHl~EFt~le~e~~~~~~-~dvm~~~ 253 (453)
T TIGR00457 189 FGKEAYLTVSGQLYLE-TY----A--LAL-SKVYTFGPTFRAEKS----NTS--RHLSEFWMIEPEMAFANL-NDLLQLA 253 (453)
T ss_pred cCCccccccCHHHHHH-HH----h--hcc-cCceEeeeccccCCC----CCC--cCcchhccceeeeecCCH-HHHHHHH
Confidence 3556676666553222 21 1 122 378999999999983 221 134699999999765553 5566666
Q ss_pred HHHH
Q psy11602 97 DEMI 100 (1083)
Q Consensus 97 ~~~~ 100 (1083)
++|+
T Consensus 254 E~lv 257 (453)
T TIGR00457 254 ETLI 257 (453)
T ss_pred HHHH
Confidence 6555
No 192
>PLN02532 asparagine-tRNA synthetase
Probab=60.33 E-value=9.8 Score=47.76 Aligned_cols=80 Identities=11% Similarity=0.040 Sum_probs=51.8
Q ss_pred CCCCCCeeEecCChHHHHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHHHH
Q psy11602 15 KDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESWK 94 (1083)
Q Consensus 15 dr~~~~~~L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s~~ 94 (1083)
|=.+.+.||.=+.+--+=.+.. .| =|+|.|+++||.|.- +|+ -.+-||+|+|.+....+ .++...
T Consensus 366 dyFg~~ayLtqS~QLylE~~~~-------gl-~rVYeIgP~FRAE~s----~T~--RHL~EFtmlE~Emaf~d-~~dvM~ 430 (633)
T PLN02532 366 DFFSRPTYLTVSGRLHLESYAC-------AL-GNVYTFGPRFRADRI----DSA--RHLAEMWMVEVEMAFSE-LEDAMN 430 (633)
T ss_pred ccCCCCeeeccCHHHHHHHHHH-------hc-CceEEEccceecCCC----CCC--cccccccceeeeehhcC-HHHHHH
Confidence 3346677777666532222221 12 479999999999983 332 25899999999976554 467777
Q ss_pred HHHHHHH-HHHHHHHH
Q psy11602 95 MLDEMIQ-NSEEFYAD 109 (1083)
Q Consensus 95 ~~~~~~~-~y~~if~~ 109 (1083)
..++|+. +.+.+++.
T Consensus 431 l~E~lI~~v~k~v~~~ 446 (633)
T PLN02532 431 CAEDYFKFLCKWVLEN 446 (633)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 7777763 34455544
No 193
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=59.34 E-value=6.9 Score=38.60 Aligned_cols=50 Identities=20% Similarity=0.353 Sum_probs=36.6
Q ss_pred CCccccccCCCCCCCCCcEEEcccCCcccccccccccccCCCcccCCCCCCCCcccccccC
Q psy11602 690 KILVCCVCLGERSDDVNEIVECDSCGVTVHEGCYGVQDTASISSTVSSCSTEPWFCESCRA 750 (1083)
Q Consensus 690 ~~~~C~VC~~~~~~~~n~iv~Cd~C~i~VH~~CYGv~~~~~~~~~~~~~~~~~W~Cd~C~~ 750 (1083)
....|..|.....--.|.-..|..|...|=..|-+. .. .+..|+|..|..
T Consensus 53 ~~~~C~~C~~~fg~l~~~~~~C~~C~~~VC~~C~~~-~~----------~~~~WlC~vC~k 102 (118)
T PF02318_consen 53 GERHCARCGKPFGFLFNRGRVCVDCKHRVCKKCGVY-SK----------KEPIWLCKVCQK 102 (118)
T ss_dssp CCSB-TTTS-BCSCTSTTCEEETTTTEEEETTSEEE-TS----------SSCCEEEHHHHH
T ss_pred CCcchhhhCCcccccCCCCCcCCcCCccccCccCCc-CC----------CCCCEEChhhHH
Confidence 566999998754445566699999999999999544 21 467899999964
No 194
>cd02426 Pol_gamma_b_Cterm C-terminal domain of mitochondrial DNA polymerase gamma B subunit, which is required for processivity. Polymerase gamma replicates and repairs mitochondrial DNA. The c-terminal domain of its B subunit is strikingly similar to the anticodon-binding domain of glycyl tRNA synthetase.
Probab=59.19 E-value=5.3 Score=39.99 Aligned_cols=21 Identities=10% Similarity=0.240 Sum_probs=18.9
Q ss_pred HHhhccCCCceecCccccccC
Q psy11602 432 ILETHQTETGVRIPDCLRKFV 452 (1083)
Q Consensus 432 ilEn~q~~~Gi~iP~~L~py~ 452 (1083)
-+|++.++.|++||..|+||-
T Consensus 9 ~iE~~~d~~Gl~~P~~iAP~q 29 (128)
T cd02426 9 GRKKGRQRQVLKLHPCLAPYK 29 (128)
T ss_pred hhhcCCCCcEEECCCCCCCeE
Confidence 349999999999999999995
No 195
>PRK03932 asnC asparaginyl-tRNA synthetase; Validated
Probab=59.16 E-value=8.2 Score=46.76 Aligned_cols=69 Identities=16% Similarity=0.190 Sum_probs=45.6
Q ss_pred CCCCeeEecCChHHHHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHHHHHH
Q psy11602 17 ELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESWKML 96 (1083)
Q Consensus 17 ~~~~~~L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s~~~~ 96 (1083)
.+.+++|.-..|.-+ .++.. .+ =|+|+|+++||+|.. ++ . -..-||+|.|.|....+. ++.....
T Consensus 186 ~~~~~~L~~Spql~l-q~l~~------g~-~rVf~i~~~FR~E~~-~t---~--rHl~EFt~lE~e~~~~~~-~~~m~~~ 250 (450)
T PRK03932 186 FGKEAYLTVSGQLYA-EAYAM------AL-GKVYTFGPTFRAENS-NT---R--RHLAEFWMIEPEMAFADL-EDNMDLA 250 (450)
T ss_pred cCCCcccccCHHHHH-HHHHh------cc-CCeEEeeeccccCCC-CC---c--cccccccccceEEeccCH-HHHHHHH
Confidence 456778877776544 33321 22 379999999999973 11 1 235699999999776554 5566666
Q ss_pred HHHH
Q psy11602 97 DEMI 100 (1083)
Q Consensus 97 ~~~~ 100 (1083)
++|+
T Consensus 251 e~li 254 (450)
T PRK03932 251 EEML 254 (450)
T ss_pred HHHH
Confidence 6655
No 196
>KOG1936|consensus
Probab=58.31 E-value=8.7 Score=45.46 Aligned_cols=84 Identities=18% Similarity=0.211 Sum_probs=62.4
Q ss_pred CCCCCCCCeeEecCChHHHHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEE-----eCC
Q psy11602 13 PEKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVL-----TSP 87 (1083)
Q Consensus 13 ~~dr~~~~~~L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~-----~~~ 87 (1083)
++|+.++-..|++---+|++-+.+..-+. -++.|+|...||+.-. ..||| |-|||..-|.=.. ..|
T Consensus 121 lkDQGGEl~SLRYDLTVPfARylAmNki~----sikRy~iAkVyRRd~P---~mtrG--R~REFYQcDFDIAG~~d~M~p 191 (518)
T KOG1936|consen 121 LKDQGGELCSLRYDLTVPFARYLAMNKIT----SIKRYHIAKVYRRDQP---AMTRG--RYREFYQCDFDIAGQFDPMIP 191 (518)
T ss_pred hhhcCCcEEEeecccccHHHHHHHHcccc----cceeeeEEEEEeccCc---hhhch--hhhhhhccCccccccCCCCCc
Confidence 78999999999999999999877654222 4788999999999875 33444 7788876553222 123
Q ss_pred CchHHHHHHHHHHHHHHHHHHHcCCc
Q psy11602 88 HDDESWKMLDEMIQNSEEFYADLGIA 113 (1083)
Q Consensus 88 ~~e~s~~~~~~~~~~y~~if~~LgLp 113 (1083)
+ .|.+.+.-+||++|||-
T Consensus 192 d--------aE~lkiv~e~L~~l~Ig 209 (518)
T KOG1936|consen 192 D--------AECLKIVVEILSRLGIG 209 (518)
T ss_pred h--------HHHHHHHHHHHhhcCcc
Confidence 3 35678888999999985
No 197
>PTZ00425 asparagine-tRNA ligase; Provisional
Probab=58.09 E-value=11 Score=46.92 Aligned_cols=46 Identities=15% Similarity=0.184 Sum_probs=31.5
Q ss_pred eEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHHHHHHHHHH
Q psy11602 48 RYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESWKMLDEMI 100 (1083)
Q Consensus 48 klyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s~~~~~~~~ 100 (1083)
|+|+|+++||+|.. .|. -...||+|+|.+....+. ++..+..+.++
T Consensus 345 rVf~i~p~FRaE~s----~t~--RHL~EFt~lE~E~af~d~-~d~m~~~E~li 390 (586)
T PTZ00425 345 DVYTFGPTFRAENS----HTS--RHLAEFWMIEPEIAFADL-YDNMELAESYI 390 (586)
T ss_pred CEEEEeceEeCCCC----CCC--CCCcccceEEEEEecCCH-HHHHHHHHHHH
Confidence 79999999999993 222 134699999999765543 44444444444
No 198
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=56.72 E-value=7.1 Score=37.02 Aligned_cols=31 Identities=19% Similarity=0.380 Sum_probs=23.1
Q ss_pred ccccccccccCCCCCcceeecccccccccccCCCccceeeecccccc
Q psy11602 546 PICAVHRDSWLPEASLPIRYLGVSTCFRQECDAGMCRTYFHVTCAQR 592 (1083)
Q Consensus 546 ~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~c~~~~H~~ca~~ 592 (1083)
..|.+|+++-.+.+-.-+ -|.|.+|.+|.++
T Consensus 79 ~~C~vC~k~l~~~~f~~~----------------p~~~v~H~~C~~r 109 (109)
T PF10367_consen 79 TKCSVCGKPLGNSVFVVF----------------PCGHVVHYSCIKR 109 (109)
T ss_pred CCccCcCCcCCCceEEEe----------------CCCeEEecccccC
Confidence 349999998887554444 4459999999864
No 199
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=55.74 E-value=3.9 Score=30.42 Aligned_cols=28 Identities=25% Similarity=0.682 Sum_probs=12.9
Q ss_pred ccccccCCCCCCcceecCccCCCccccC
Q psy11602 1039 KCGLCHLSHDPHTMAKCDTCHLYYHLAC 1066 (1083)
Q Consensus 1039 ~c~~C~~~~~~~~~~~Cd~C~~~yH~~C 1066 (1083)
.|.+|++..+....-.|+.||-.-|..|
T Consensus 2 ~C~~C~~~~~~~~~Y~C~~Cdf~lH~~C 29 (30)
T PF07649_consen 2 RCDACGKPIDGGWFYRCSECDFDLHEEC 29 (30)
T ss_dssp --TTTS----S--EEE-TTT-----HHH
T ss_pred cCCcCCCcCCCCceEECccCCCccChhc
Confidence 5899999998888999999999999887
No 200
>PLN02221 asparaginyl-tRNA synthetase
Probab=55.59 E-value=15 Score=45.76 Aligned_cols=46 Identities=15% Similarity=0.186 Sum_probs=34.1
Q ss_pred eEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHHHHHHHHHH
Q psy11602 48 RYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESWKMLDEMI 100 (1083)
Q Consensus 48 klyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s~~~~~~~~ 100 (1083)
|+|.|+++||.|.. +|+ -.+-||+|+|.+....+- ++.....++|+
T Consensus 328 rVfeIgP~FRAE~s----~T~--RHL~EFtmlE~Emaf~d~-~dvm~l~E~lv 373 (572)
T PLN02221 328 SVYTFGPTFRAENS----HTS--RHLAEFWMVEPEIAFADL-EDDMNCAEAYV 373 (572)
T ss_pred CeEEEccceecCCC----CCC--cccccccceeeeeecCCH-HHHHHHHHHHH
Confidence 79999999999993 111 368899999999765544 55666666655
No 201
>TIGR02367 PylS pyrrolysyl-tRNA synthetase. PylS is the archaeal enzyme responsible for charging the pyrrolysine tRNA, PylT, by ligating a free molecule of pyrrolysine. Pyrrolysine is encoded at an in-frame UAG (amber) at least in several corrinoid-dependent methyltransferases of the archaeal genera Methanosarcina and Methanococcoides, such as trimethylamine methyltransferase.
Probab=53.59 E-value=29 Score=41.89 Aligned_cols=58 Identities=14% Similarity=0.276 Sum_probs=44.2
Q ss_pred hhhcccccccccccCcCceeEEEeeeEEEEEEeCCCchhHHHHHHHHHHHHHHHHHHhCCcEEEEe
Q psy11602 290 EMIQNSEEFYADLDTRGIFRVHQFEKVEQFVLTSPHDDESWKTLDEMIQNSEEFYADLGIAYRVVN 355 (1083)
Q Consensus 290 ~~~~~~~~~~~~~~trGl~Rvhqf~kvE~f~~~~~~~~~s~~~~e~~~~~~e~~~~~L~lpyRvv~ 355 (1083)
+++....+||+.....| |+++|.+++-..+-... .|.++...+.++|+.|||.|++..
T Consensus 320 KIFEIGkVFR~E~~~~t--hlREF~QL~~eIaG~~a------tfaDlealL~e~Lr~LGIdfeitE 377 (453)
T TIGR02367 320 KIFEIGPCYRKESDGKE--HLEEFTMLNFCQMGSGC------TRENLEAIIKDFLDHLEIDFEIVG 377 (453)
T ss_pred eEEEEcCeEecCCCCCC--CcCeEEEEEEEEECCCC------CHHHHHHHHHHHHHHCCCceEEeC
Confidence 66777778888766555 67799998888665442 255777899999999999999963
No 202
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=52.52 E-value=41 Score=31.78 Aligned_cols=32 Identities=22% Similarity=0.508 Sum_probs=24.6
Q ss_pred cccccccccCCCCCCcceecCccCCCccccCCC
Q psy11602 1036 LSHKCGLCHLSHDPHTMAKCDTCHLYYHLACLD 1068 (1083)
Q Consensus 1036 ~~~~c~~C~~~~~~~~~~~Cd~C~~~yH~~Cl~ 1068 (1083)
..+.|.+|++.-........ -|+..+|.+|.+
T Consensus 77 ~~~~C~vC~k~l~~~~f~~~-p~~~v~H~~C~~ 108 (109)
T PF10367_consen 77 ESTKCSVCGKPLGNSVFVVF-PCGHVVHYSCIK 108 (109)
T ss_pred CCCCccCcCCcCCCceEEEe-CCCeEEeccccc
Confidence 46679999998887555554 456889999975
No 203
>PF03107 C1_2: C1 domain; InterPro: IPR004146 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in DAG_PE-bind (IPR002219 from INTERPRO), therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol. This family are found in plant proteins.
Probab=52.14 E-value=11 Score=28.06 Aligned_cols=28 Identities=29% Similarity=0.579 Sum_probs=21.5
Q ss_pred cccccCCCCCCCCCcEEEcccCCccccccc
Q psy11602 693 VCCVCLGERSDDVNEIVECDSCGVTVHEGC 722 (1083)
Q Consensus 693 ~C~VC~~~~~~~~n~iv~Cd~C~i~VH~~C 722 (1083)
.|.||...-. +..+..|+.|+..+|-.|
T Consensus 2 ~C~~C~~~~~--~~~~Y~C~~c~f~lh~~C 29 (30)
T PF03107_consen 2 WCDVCRRKID--GFYFYHCSECCFTLHVRC 29 (30)
T ss_pred CCCCCCCCcC--CCEeEEeCCCCCeEcCcc
Confidence 5999975322 222999999999999988
No 204
>PF01409 tRNA-synt_2d: tRNA synthetases class II core domain (F); InterPro: IPR002319 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Phenylalanyl-tRNA synthetase (6.1.1.20 from EC) is an alpha2/beta2 tetramer composed of 2 subunits that belongs to class IIc. In eubacteria, a small subunit (pheS gene) can be designated as beta (E. coli) or alpha subunit (nomenclature adopted in InterPro). Reciprocally the large subunit (pheT gene) can be designated as alpha (E. coli) or beta (see IPR004531 from INTERPRO and IPR004532 from INTERPRO). In all other kingdoms the two subunits have equivalent length in eukaryota, and can be identified by specific signatures. The enzyme from Thermus thermophilus has an alpha 2 beta 2 type quaternary structure and is one of the most complicated members of the synthetase family. Identification of phenylalanyl-tRNA synthetase as a member of class II aaRSs was based only on sequence alignment of the small alpha-subunit with other synthetases [].; GO: 0000049 tRNA binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 3TUP_A 3HFV_A 3CMQ_A 3TEG_A 2AKW_B 1B70_B 1B7Y_B 2ALY_B 2IY5_B 2AMC_B ....
Probab=51.02 E-value=49 Score=37.01 Aligned_cols=125 Identities=14% Similarity=0.121 Sum_probs=77.0
Q ss_pred hhhcccccccccccCcCceeEEEeeeEEEEEEeCCCchhHHHHHHHHHHHHHHHHHHh-CCcEEEEeccCCCcchhhhce
Q psy11602 290 EMIQNSEEFYADLDTRGIFRVHQFEKVEQFVLTSPHDDESWKTLDEMIQNSEEFYADL-GIAYRVVNIVSGALNHAAAKK 368 (1083)
Q Consensus 290 ~~~~~~~~~~~~~~trGl~Rvhqf~kvE~f~~~~~~~~~s~~~~e~~~~~~e~~~~~L-~lpyRvv~~~~~dl~~~a~~~ 368 (1083)
+++....|||... -.--..++|+++|-+.+-.. .-|..+....+.|++.| |....+-..++-.=..--+..
T Consensus 104 kif~iG~VyR~D~--~D~th~~~f~Qleg~~~~~~------~~f~~Lk~~l~~l~~~lfG~~~~~r~~ps~fPftePs~e 175 (247)
T PF01409_consen 104 KIFEIGKVYRRDE--IDATHLPEFHQLEGLVVDKN------VTFEDLKGTLEELLKELFGIDVKVRFRPSYFPFTEPSRE 175 (247)
T ss_dssp EEEEEEEEESSSC--SBSSBESEEEEEEEEEEETT------E-HHHHHHHHHHHHHHHHTTTEEEEEEECEETTEEEEEE
T ss_pred EEEecCceEecCC--cccccCccceeEeeEEEecc------cchhHHHHHHHHHHHHHhhcccceEeecCCCCcccCCeE
Confidence 4444455666643 33345668889998876543 24778999999999999 987444444544333334556
Q ss_pred eeEEEeeCCCCcEEeeecccCcccccccccceEEecccCCCCceeeEEeecccccchhHHHHHHHh
Q psy11602 369 LDLEAWFPGSGAFRELVSCSNCLAYQSRRLLVRYGQTKKMNEKIEFVHMLNATACATTRVICAILE 434 (1083)
Q Consensus 369 ~DiE~w~P~~~~y~Ev~S~sn~~d~qarrl~iry~~~~~~~~~~~~~htln~t~~a~~R~i~ailE 434 (1083)
+|+....+..+.|.||.-|.-..----+.++|- +. ++.=+-|+.+.|+......
T Consensus 176 ~~i~~~~~~~~~wiEvgg~G~vhP~Vl~~~gid--~~----------~~~~A~G~GleRlam~~~g 229 (247)
T PF01409_consen 176 ADIYCGVCKGGGWIEVGGCGMVHPEVLENWGID--EE----------YPGFAFGLGLERLAMLKYG 229 (247)
T ss_dssp EEEEEECTTTTCEEEEEEEEEE-HHHHHHTT----TT----------SEEEEEEEEHHHHHHHHHT
T ss_pred EEEEEeeccCCCceEEeecccccHhhhhccCcC--cc----------ceEEEecCCHHHHHHHHcC
Confidence 666666688999999998865443333444442 10 1122678889998765543
No 205
>PLN02603 asparaginyl-tRNA synthetase
Probab=50.98 E-value=18 Score=45.10 Aligned_cols=46 Identities=13% Similarity=0.153 Sum_probs=31.1
Q ss_pred eEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHHHHHHHHHH
Q psy11602 48 RYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESWKMLDEMI 100 (1083)
Q Consensus 48 klyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s~~~~~~~~ 100 (1083)
++|+|+++||+|.. +|. -..-||+|+|.+....+- ++.....+.++
T Consensus 323 rVy~igp~FRaE~s----~T~--RHL~EF~mlE~E~af~dl-~d~m~~~E~~l 368 (565)
T PLN02603 323 DVYTFGPTFRAENS----NTS--RHLAEFWMIEPELAFADL-NDDMACATAYL 368 (565)
T ss_pred ceEEEecceeCCCC----CCc--cccccceeeeeeeecCCH-HHHHHHHHHHH
Confidence 68999999999994 221 135799999999765443 44444444443
No 206
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=49.08 E-value=8.3 Score=34.59 Aligned_cols=31 Identities=29% Similarity=0.721 Sum_probs=12.1
Q ss_pred cccccccCCC---CCCcceecC--ccCCCccccCCC
Q psy11602 1038 HKCGLCHLSH---DPHTMAKCD--TCHLYYHLACLD 1068 (1083)
Q Consensus 1038 ~~c~~C~~~~---~~~~~~~Cd--~C~~~yH~~Cl~ 1068 (1083)
..|.||-..- ++...+.|+ .|.+.||+.||.
T Consensus 3 ~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~ 38 (70)
T PF11793_consen 3 LECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLS 38 (70)
T ss_dssp -S-SSS--SS-TT-----B--S-TT----B-SGGGH
T ss_pred CCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHH
Confidence 4588886542 334568998 999999999995
No 207
>PRK02983 lysS lysyl-tRNA synthetase; Provisional
Probab=48.35 E-value=11 Score=50.54 Aligned_cols=70 Identities=20% Similarity=0.179 Sum_probs=47.9
Q ss_pred CCCCCeeEecCChHHHHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHHHHH
Q psy11602 16 DELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESWKM 95 (1083)
Q Consensus 16 r~~~~~~L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s~~~ 95 (1083)
-.+.++||+-..|--+=-+... . + =|+|+|+++||+|-- ++ -+.-||+|.|.|....+- ++..+.
T Consensus 815 ~~~~~~yLriSPELylKrLivg---G---~-erVFEIg~~FRnE~~----~~---rHnpEFTmLE~y~a~~dy-~d~m~l 879 (1094)
T PRK02983 815 AYDMDLYLRIAPELYLKRLCVG---G---V-ERVFELGRNFRNEGV----DA---THNPEFTLLEAYQAHADY-DTMRDL 879 (1094)
T ss_pred CCCccchhhcChHHHHHHHHhc---c---c-CceEEEcceecCCCC----CC---CccccccchhhhhhcCCH-HHHHHH
Confidence 3456788888887544333321 1 1 379999999999983 33 378899999999887644 556666
Q ss_pred HHHHH
Q psy11602 96 LDEMI 100 (1083)
Q Consensus 96 ~~~~~ 100 (1083)
.++++
T Consensus 880 ~E~li 884 (1094)
T PRK02983 880 TRELI 884 (1094)
T ss_pred HHHHH
Confidence 66665
No 208
>PLN02972 Histidyl-tRNA synthetase
Probab=48.16 E-value=56 Score=42.11 Aligned_cols=62 Identities=19% Similarity=0.248 Sum_probs=44.1
Q ss_pred hhhcccccccccccCcCcee-EEEeeeEEEEEEeCCCchhHHHHHHHHHHHHHHHHHHhCCcEEEEecc
Q psy11602 290 EMIQNSEEFYADLDTRGIFR-VHQFEKVEQFVLTSPHDDESWKTLDEMIQNSEEFYADLGIAYRVVNIV 357 (1083)
Q Consensus 290 ~~~~~~~~~~~~~~trGl~R-vhqf~kvE~f~~~~~~~~~s~~~~e~~~~~~e~~~~~L~lpyRvv~~~ 357 (1083)
+.|....+||+....+|-+| .+|+. ||+|+...+...+ -|+|..+.++|+.|||+--.+.+.
T Consensus 419 KrYyiG~VFR~e~pqkGR~REF~Q~G-~EIIG~~~~~~aD-----AEVI~La~E~L~~LGi~df~I~IN 481 (763)
T PLN02972 419 KRYQIAKVYRRDNPSKGRYREFYQCD-FDIAGVYEPMGPD-----FEIIKVLTELLDELDIGTYEVKLN 481 (763)
T ss_pred eEEEeccEEecCCCCCCCCccceEEe-EEEEcCCCcchhh-----HHHHHHHHHHHHhCCCCceEEEeC
Confidence 55666778998888899777 34666 9999865542223 359999999999999963334443
No 209
>PLN02850 aspartate-tRNA ligase
Probab=47.55 E-value=13 Score=45.97 Aligned_cols=72 Identities=13% Similarity=0.139 Sum_probs=43.3
Q ss_pred CCCCCCeeEecCChHHHHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEE-EEeCCCchHHH
Q psy11602 15 KDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQF-VLTSPHDDESW 93 (1083)
Q Consensus 15 dr~~~~~~L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~-~~~~~~~e~s~ 93 (1083)
+-.+..++|.-..|..+=-+... .+ =++|+|+++||+|-. ++ + -..-||+|.|.+ .|.... ++..
T Consensus 267 ~yf~~~~~L~qSpql~kq~li~~------g~-~rVfeIgp~FRaE~s-~t---~--RHl~EFt~Le~Em~~~~~y-~evm 332 (530)
T PLN02850 267 DYKGQPACLAQSPQLHKQMAICG------DF-RRVFEIGPVFRAEDS-FT---H--RHLCEFTGLDLEMEIKEHY-SEVL 332 (530)
T ss_pred ccCCcceecCCCHHHHHHHHHHh------cC-CceEEEecccccCCC-CC---C--ccchhhccchhhhhhhcCH-HHHH
Confidence 44567778876665332222211 12 289999999999982 21 1 146799999999 444333 4455
Q ss_pred HHHHHHH
Q psy11602 94 KMLDEMI 100 (1083)
Q Consensus 94 ~~~~~~~ 100 (1083)
+..++|+
T Consensus 333 ~~~E~ll 339 (530)
T PLN02850 333 DVVDELF 339 (530)
T ss_pred HHHHHHH
Confidence 5555555
No 210
>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
Probab=46.94 E-value=12 Score=42.52 Aligned_cols=59 Identities=24% Similarity=0.386 Sum_probs=43.4
Q ss_pred Ccc-cccc--cccccCCCCCcceeecccccccccccCCCccceeeecccccccccccccccccccCCCCCCccccccccc
Q psy11602 544 EQP-ICAV--HRDSWLPEASLPIRYLGVSTCFRQECDAGMCRTYFHVTCAQREGLLSEATSEEVDQADPFYAHCRLHADK 620 (1083)
Q Consensus 544 ~~~-~c~~--~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~c~~~~H~~ca~~~g~~~e~~~~~~~~~~p~~~~c~~h~~k 620 (1083)
+|| .|.+ |.|.|++.-||-| |..|-||.+..- +.++| ++
T Consensus 347 ~KpykCpV~gC~K~YknqnGLKY-------------------H~lhGH~~~~~~----------~~p~p---------~~ 388 (423)
T COG5189 347 GKPYKCPVEGCNKKYKNQNGLKY-------------------HMLHGHQNQKLH----------ENPSP---------EK 388 (423)
T ss_pred CceecCCCCCchhhhccccchhh-------------------hhhccccCcccC----------CCCCc---------cc
Confidence 588 8985 9999999999999 999999988222 12222 34
Q ss_pred ccccccCCCceeeccccCCC
Q psy11602 621 LEDFSKFSKILVCCVCLGER 640 (1083)
Q Consensus 621 ~~~~~~~~~~~~c~~c~g~~ 640 (1083)
...|...+|--+|.+|-+.+
T Consensus 389 ~~~F~~~~KPYrCevC~KRY 408 (423)
T COG5189 389 MNIFSAKDKPYRCEVCDKRY 408 (423)
T ss_pred cccccccCCceeccccchhh
Confidence 44666777756799996654
No 211
>PTZ00401 aspartyl-tRNA synthetase; Provisional
Probab=46.06 E-value=12 Score=46.34 Aligned_cols=70 Identities=13% Similarity=0.149 Sum_probs=40.5
Q ss_pred CCCCeeEecCChHHHHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEE-EEEeCCCchHHHHH
Q psy11602 17 ELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQ-FVLTSPHDDESWKM 95 (1083)
Q Consensus 17 ~~~~~~L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~-~~~~~~~~e~s~~~ 95 (1083)
.+..++|.-+.|.- -.+.. ..++ =|+|+|+++||+|-.... -...||+|.|. +.|..+. ++..+.
T Consensus 257 f~~~~~L~qSpql~-kq~li-----~~g~-~rVfeI~p~FRaE~s~T~------RHl~EFt~Le~E~~~~~~y-~evm~~ 322 (550)
T PTZ00401 257 FNRFAYLAQSPQLY-KQMVL-----QGDV-PRVFEVGPVFRSENSNTH------RHLTEFVGLDVEMRINEHY-YEVLDL 322 (550)
T ss_pred CCCCeecCCCHHHH-HHHHH-----hcCC-CCEEEEeCeEeCCCCCCC------CCccchhhhhhhhHhcCCH-HHHHHH
Confidence 45667775555522 22221 1122 379999999999984211 13569999999 4554433 345555
Q ss_pred HHHHH
Q psy11602 96 LDEMI 100 (1083)
Q Consensus 96 ~~~~~ 100 (1083)
.++++
T Consensus 323 ~e~l~ 327 (550)
T PTZ00401 323 AESLF 327 (550)
T ss_pred HHHHH
Confidence 55444
No 212
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=45.83 E-value=9.6 Score=34.19 Aligned_cols=34 Identities=35% Similarity=0.610 Sum_probs=13.9
Q ss_pred ccccccCCCCC-CCCCcEEEcc--cCCcccccccccc
Q psy11602 692 LVCCVCLGERS-DDVNEIVECD--SCGVTVHEGCYGV 725 (1083)
Q Consensus 692 ~~C~VC~~~~~-~~~n~iv~Cd--~C~i~VH~~CYGv 725 (1083)
..|.||..... .+..+.+.|+ .|+..+|..|..-
T Consensus 3 ~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~ 39 (70)
T PF11793_consen 3 LECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSE 39 (70)
T ss_dssp -S-SSS--SS-TT-----B--S-TT----B-SGGGHH
T ss_pred CCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHH
Confidence 47999998655 3445679998 8999999999865
No 213
>TIGR00470 sepS O-phosphoseryl-tRNA(Cys) synthetase. This family of archaeal proteins resembles known phenylalanyl-tRNA synthetase alpha chains. Recently, it was shown to act in a proposed pathway of tRNA(Cys) indirect aminoacylation, resulting in Cys biosynthesis from O-phosphoserine, in certain archaea. It charges tRNA(Cys) with O-phosphoserine. The pscS gene product converts the phosphoserine to Cys.
Probab=44.99 E-value=77 Score=38.65 Aligned_cols=118 Identities=10% Similarity=0.135 Sum_probs=73.4
Q ss_pred hhhcccccccccc--cCcCceeEEEeeeEEEEEEeCCCchhHHHHHHHHHHHHHHHHHHhCCcEEEEeccCCC--cchhh
Q psy11602 290 EMIQNSEEFYADL--DTRGIFRVHQFEKVEQFVLTSPHDDESWKTLDEMIQNSEEFYADLGIAYRVVNIVSGA--LNHAA 365 (1083)
Q Consensus 290 ~~~~~~~~~~~~~--~trGl~Rvhqf~kvE~f~~~~~~~~~s~~~~e~~~~~~e~~~~~L~lpyRvv~~~~~d--l~~~a 365 (1083)
++.....|||... |.. +.++|+++|-+.+-..- -|.++....+.||+.||+- .+-..|+.. -.+--
T Consensus 209 RIFsIGRVfRrD~~~DaT---Hl~eFhQlEGLVVdedV------Sf~DLKgvLe~LLr~LG~~-~vRFRPsekrskyYFP 278 (533)
T TIGR00470 209 KLFSIDRCFRREQREDRS---HLMTYHSASCVVVDEEV------SVDDGKAVAEGLLAQFGFT-KFRFRPDEKKSKYYIP 278 (533)
T ss_pred EEEeeeeEEecCCCCCCc---cCceeeeEEEEEECCCC------CHHHHHHHHHHHHHHhCCc-eEEeccCcCCCCCcCC
Confidence 5556666777652 433 36677777776665542 4888999999999999972 122234422 11222
Q ss_pred hceeeEEEeeCCCCcEEeeecccCcccccccccceEEecccCCCCceeeEEeecccccchhHHHHH
Q psy11602 366 AKKLDLEAWFPGSGAFRELVSCSNCLAYQSRRLLVRYGQTKKMNEKIEFVHMLNATACATTRVICA 431 (1083)
Q Consensus 366 ~~~~DiE~w~P~~~~y~Ev~S~sn~~d~qarrl~iry~~~~~~~~~~~~~htln~t~~a~~R~i~a 431 (1083)
.....+.++-|..+.|.||+.|.-..=--=+.++|.+. .| +-|+.+.|+...
T Consensus 279 FTEaEVdV~~~k~~gWiEIgG~GmVhPeVL~~~GId~P---------V~-----AFGIGVERlAMi 330 (533)
T TIGR00470 279 ETQTEVYAYHPKLGEWIEVATFGVYSPIALAKYNIDVP---------VM-----NLGLGVERLAMI 330 (533)
T ss_pred CceEEEEEEccCCCceEEEEeccccCHHHHHHcCCCCc---------eE-----EEEecHHHHHHH
Confidence 23368888889888899999887654433333444321 11 667788886543
No 214
>COG2269 Truncated, possibly inactive, lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=41.40 E-value=43 Score=38.07 Aligned_cols=57 Identities=14% Similarity=0.119 Sum_probs=44.8
Q ss_pred CCCeeEecCChHHHHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCC
Q psy11602 18 LDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPH 88 (1083)
Q Consensus 18 ~~~~~L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~ 88 (1083)
...++|.+.-|-.|--|.+.... .+||++.+||+|-. |=+.-=||+|.|=|...-+-
T Consensus 68 ~~~l~L~TSPEy~mKrLLAag~~-------~ifql~kvfRN~E~-------G~~H~PEFTMLEWYrv~~d~ 124 (322)
T COG2269 68 GKPLWLHTSPEYHMKRLLAAGSG-------PIFQLGKVFRNEEM-------GRLHNPEFTMLEWYRVGCDY 124 (322)
T ss_pred cceeeeecCcHHHHHHHHHccCC-------cchhhhHHHhcccc-------cccCCCceeEeeeeccCCcH
Confidence 45789999999888777775444 47999999999873 33455699999999987766
No 215
>KOG2784|consensus
Probab=40.21 E-value=16 Score=42.54 Aligned_cols=118 Identities=16% Similarity=0.211 Sum_probs=76.8
Q ss_pred CeeEecCChHHHHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHHHHHHHHH
Q psy11602 20 DKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESWKMLDEM 99 (1083)
Q Consensus 20 ~~~L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s~~~~~~~ 99 (1083)
...|.-||-+++.+-+--....--=-|.||+.|-++||+|+-.+- .+-||..+|....+..- ++-.+
T Consensus 307 qKnvLRTHTTavSArmLy~LAk~~f~p~K~FSIDrVFRNEtvDaT-------HLAEFHQVEGviad~gl------tLgdL 373 (483)
T KOG2784|consen 307 QKNVLRTHTTAVSARMLYRLAKKGFKPAKYFSIDRVFRNETVDAT-------HLAEFHQVEGVIADKGL------TLGDL 373 (483)
T ss_pred HHHHHhhhhHHhhHHHHHHHHhCCCCcccccchhhhhhccccchH-------HHHHHhhhceeeecCCC------cHHHH
Confidence 345667888887663222222222349999999999999994321 56799999999988877 66778
Q ss_pred HHHHHHHHHHcCCceEEEEeccCCCCcccceeEeEEEEecCCCceeEEEEcCCC
Q psy11602 100 IQNSEEFYADLGIAYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNC 153 (1083)
Q Consensus 100 ~~~y~~if~~LgLpyrvv~~~sgdlg~~as~~~diE~~~P~~~~~~ev~s~s~c 153 (1083)
+.+.+.||.+||+-=..- .|++.--.-++. -+=.|-.+...|+||+...+.
T Consensus 374 ig~l~~ff~~lg~tnlrf-KPaynpYtepsm--eif~yh~gl~kwvEvgnSg~f 424 (483)
T KOG2784|consen 374 IGILMEFFTKLGATNLRF-KPAYNPYTEPSM--EIFSYHHGLFKWVEVGNSGMF 424 (483)
T ss_pred HHHHHHHHhccCCccccc-cCCCCCCCCcee--EEEEeccccceEEEEcCCCCC
Confidence 999999999998643222 233332222333 112244566778888765543
No 216
>COG0124 HisS Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=39.67 E-value=25 Score=42.43 Aligned_cols=59 Identities=25% Similarity=0.367 Sum_probs=48.5
Q ss_pred hhhcccccccccccCcCceeEE-EeeeEEEEEEeCCCchhHHHHHHHHHHHHHHHHHHhCCc-EEEEe
Q psy11602 290 EMIQNSEEFYADLDTRGIFRVH-QFEKVEQFVLTSPHDDESWKTLDEMIQNSEEFYADLGIA-YRVVN 355 (1083)
Q Consensus 290 ~~~~~~~~~~~~~~trGl~Rvh-qf~kvE~f~~~~~~~~~s~~~~e~~~~~~e~~~~~L~lp-yRvv~ 355 (1083)
+.+....+||+.+..+|=||.+ ||. ||.|+...|.. ++ |+|..+-++|++|||. |+|..
T Consensus 103 k~yy~g~vfRyErPQ~GR~RqF~Q~g-~E~iG~~~~~~-DA-----Evi~l~~~~l~~lGi~~~~l~i 163 (429)
T COG0124 103 KLYYFGPVFRYERPQKGRYRQFYQFG-VEVIGSDSPDA-DA-----EVIALAVEILEALGIGGFTLEI 163 (429)
T ss_pred eEEEecceecCCCCCCCCceeeEEcC-eEEeCCCCccc-CH-----HHHHHHHHHHHHcCCCcEEEEE
Confidence 5667777999999999999874 666 99999999863 43 5999999999999999 55543
No 217
>PLN02788 phenylalanine-tRNA synthetase
Probab=39.56 E-value=1.5e+02 Score=35.60 Aligned_cols=142 Identities=14% Similarity=0.171 Sum_probs=79.7
Q ss_pred EecCChHHHHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCc------hHHHHHH
Q psy11602 23 LIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHD------DESWKML 96 (1083)
Q Consensus 23 L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~------e~s~~~~ 96 (1083)
|--||-.++..-+... ..| ++..++.+||++.-.+- ...+|...|.+.+...+. +...-.+
T Consensus 130 lLRTHTSa~q~~~l~~-----~~~-~~~~~g~VyRrD~iD~t-------H~p~FhQ~EG~~v~~~~~~~~~~~~~~~~~~ 196 (402)
T PLN02788 130 VLRCHTSAHQAELLRA-----GHT-HFLVTGDVYRRDSIDAT-------HYPVFHQMEGVRVFSPEEWEASGLDGTDLAA 196 (402)
T ss_pred cccCCCcHHHHHHHHh-----CCC-cEEEEeeEeecCCCCcc-------cCccceeEEEEEEecccccccccccccccCH
Confidence 4456665554433322 223 89999999999873221 467888888888864321 0112345
Q ss_pred HHHHHHHHHHHHHc-CCc-eEEEEeccCCCCcccceeEeEEEEecCCCceeEEEEcCCCchhhhhcccceeccCCCcccc
Q psy11602 97 DEMIQNSEEFYADL-GIA-YRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQSRRLLVRYGQTKQKIYA 174 (1083)
Q Consensus 97 ~~~~~~y~~if~~L-gLp-yrvv~~~sgdlg~~as~~~diE~~~P~~~~~~ev~s~s~cgdyqs~rl~i~y~~~~~~~n~ 174 (1083)
..+...-+.|+..| |+. +|. .++. ++.-.-.+.++++.. +.|+|+.-|...-....+.+++.. ....+
T Consensus 197 ~dLKg~Le~l~~~lfg~~~~r~--~~s~--fPft~Ps~e~dI~~~--g~WlEvlG~G~vhP~Vl~~~gi~~----~~g~A 266 (402)
T PLN02788 197 EDLKKTLEGLARHLFGDVEMRW--VDAY--FPFTNPSFELEIFFK--GEWLEVLGCGVTEQEILKNNGRSD----NVAWA 266 (402)
T ss_pred HHHHHHHHHHHHHhcCCCceEE--ecCC--CCCCCCCeEEEEEEC--CEEEEEeeEEEEcHHHHHHcCCCC----CcEEE
Confidence 67777888888888 763 233 2322 121122334455553 468887554333333344444421 13566
Q ss_pred ccccchhheehee
Q psy11602 175 TACATTRVICAIL 187 (1083)
Q Consensus 175 tg~a~~Rli~All 187 (1083)
.|+++.|++....
T Consensus 267 fglgLeRLaml~~ 279 (402)
T PLN02788 267 FGLGLERLAMVLF 279 (402)
T ss_pred EEEeHHHHHHhhc
Confidence 7888899876553
No 218
>PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp []. Amongst the gene products is a well-conserved family of 130.7kDa proteins that share no sequence similarity with any other known proteins, other than in plants. The sequences are characterised by an N-terminal domain of variable length, a central cysteine-rich region and a relatively acidic C-terminal domain. The sequences may possess a PHD finger.
Probab=38.80 E-value=16 Score=43.56 Aligned_cols=37 Identities=24% Similarity=0.543 Sum_probs=27.8
Q ss_pred cccccccccCCCCCcceeecccccccccccCCCccceeeeccccccccc
Q psy11602 547 ICAVHRDSWLPEASLPIRYLGVSTCFRQECDAGMCRTYFHVTCAQREGL 595 (1083)
Q Consensus 547 ~c~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~c~~~~H~~ca~~~g~ 595 (1083)
-|-+|.|-=.+-++-+| ++|| .|.||.|..||-+.++
T Consensus 130 ~C~iC~kfD~~~n~~~W----------i~Cd--~CgH~cH~dCALr~~~ 166 (446)
T PF07227_consen 130 MCCICSKFDDNKNTCSW----------IGCD--VCGHWCHLDCALRHEL 166 (446)
T ss_pred CccccCCcccCCCCeeE----------Eecc--CCCceehhhhhccccc
Confidence 45578774445556666 8888 8999999999997664
No 219
>PLN02853 Probable phenylalanyl-tRNA synthetase alpha chain
Probab=38.27 E-value=85 Score=38.49 Aligned_cols=143 Identities=15% Similarity=0.198 Sum_probs=90.4
Q ss_pred hhcccccccccccCcCceeEEEeeeEEEEEEeCCCchhHHHHHHHHHHHHHHHHHHhCCcEEEEeccCCCcchhhhceee
Q psy11602 291 MIQNSEEFYADLDTRGIFRVHQFEKVEQFVLTSPHDDESWKTLDEMIQNSEEFYADLGIAYRVVNIVSGALNHAAAKKLD 370 (1083)
Q Consensus 291 ~~~~~~~~~~~~~trGl~Rvhqf~kvE~f~~~~~~~~~s~~~~e~~~~~~e~~~~~L~lpyRvv~~~~~dl~~~a~~~~D 370 (1083)
++....+||... =---+.++|+.||-+++-.. --|..|+...++|++.||. -.|--.|+- ++=-.=.+.
T Consensus 345 ~fsigrVfR~d~--iDatH~~eFhQ~EG~vvd~~------~t~~~L~g~l~~f~~~lg~-~~~RfrP~y--fPfTEPS~E 413 (492)
T PLN02853 345 YFSIDRVFRNEA--VDRTHLAEFHQVEGLVCDRG------LTLGDLIGVLEDFFSRLGM-TKLRFKPAY--NPYTEPSME 413 (492)
T ss_pred EEeccceecCCC--CCcccCccceeEEEEEEeCC------CCHHHHHHHHHHHHHHcCC-ceEEEecCC--CCCCCCeEE
Confidence 344445666643 22235678999999988543 2356788999999999987 444444432 333445678
Q ss_pred EEEeeCCCCcEEeeecccCcccccccccceEEecccCCCCceeeEEeecccccchhHHHHHHHhhccCCCceecCccccc
Q psy11602 371 LEAWFPGSGAFRELVSCSNCLAYQSRRLLVRYGQTKKMNEKIEFVHMLNATACATTRVICAILETHQTETGVRIPDCLRK 450 (1083)
Q Consensus 371 iE~w~P~~~~y~Ev~S~sn~~d~qarrl~iry~~~~~~~~~~~~~htln~t~~a~~R~i~ailEn~q~~~Gi~iP~~L~p 450 (1083)
+++|.|+.++|.||.-|....----+.++| +. .| +.=+-|+.+.|+....+. ||+ ||.
T Consensus 414 i~v~~~~~gkWiEi~g~Gm~rpevl~~~Gi---~~-------~~--~~~A~GlGleRlaMl~yg---------i~D-IR~ 471 (492)
T PLN02853 414 IFSYHEGLKKWVEVGNSGMFRPEMLLPMGL---PE-------DV--NVIAWGLSLERPTMILYG---------IDN-IRD 471 (492)
T ss_pred EEEEecCCCCEEEEecCcCcCHHHHHhCCC---CC-------cc--eEEEEEecHHHHHHHHhC---------CcH-HHH
Confidence 889999999999999887665544455555 11 11 122778899997665433 333 676
Q ss_pred cCCCcccCCCcccCCCCCCCC
Q psy11602 451 FVPAVYVNEAGEIPFVKTAPI 471 (1083)
Q Consensus 451 y~~~~~~~~~~~~~~~~~~p~ 471 (1083)
+.++. -+|.|+..+|+
T Consensus 472 l~~~k-----~Dl~~lr~~p~ 487 (492)
T PLN02853 472 LFGHK-----VDLGLIKRNPI 487 (492)
T ss_pred HhCCC-----CCHHHHhhCcc
Confidence 66531 13556766665
No 220
>cd02426 Pol_gamma_b_Cterm C-terminal domain of mitochondrial DNA polymerase gamma B subunit, which is required for processivity. Polymerase gamma replicates and repairs mitochondrial DNA. The c-terminal domain of its B subunit is strikingly similar to the anticodon-binding domain of glycyl tRNA synthetase.
Probab=37.29 E-value=16 Score=36.66 Aligned_cols=21 Identities=10% Similarity=0.240 Sum_probs=19.1
Q ss_pred eeccccCCCeeEecccccccc
Q psy11602 186 ILETHQTETGVRIPDCLRKFV 206 (1083)
Q Consensus 186 lle~~~~~~Gi~lP~~L~p~~ 206 (1083)
-+|++.++.|++||+.|+||.
T Consensus 9 ~iE~~~d~~Gl~~P~~iAP~q 29 (128)
T cd02426 9 GRKKGRQRQVLKLHPCLAPYK 29 (128)
T ss_pred hhhcCCCCcEEECCCCCCCeE
Confidence 358889999999999999998
No 221
>PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp []. Amongst the gene products is a well-conserved family of 130.7kDa proteins that share no sequence similarity with any other known proteins, other than in plants. The sequences are characterised by an N-terminal domain of variable length, a central cysteine-rich region and a relatively acidic C-terminal domain. The sequences may possess a PHD finger.
Probab=36.01 E-value=28 Score=41.66 Aligned_cols=59 Identities=19% Similarity=0.543 Sum_probs=36.5
Q ss_pred cccccCCCCCC-CCCcEEEcccCCccccccccccccc----CCCcccCCCCCCCCcccccccCCC
Q psy11602 693 VCCVCLGERSD-DVNEIVECDSCGVTVHEGCYGVQDT----ASISSTVSSCSTEPWFCESCRAGI 752 (1083)
Q Consensus 693 ~C~VC~~~~~~-~~n~iv~Cd~C~i~VH~~CYGv~~~----~~~~~~~~~~~~~~W~Cd~C~~~~ 752 (1083)
.|.||..-+.. ++---|.||-|+...|..| ++... ...........+..+.|..|-...
T Consensus 130 ~C~iC~kfD~~~n~~~Wi~Cd~CgH~cH~dC-ALr~~~i~~G~s~~g~~g~~d~~f~C~~C~~~s 193 (446)
T PF07227_consen 130 MCCICSKFDDNKNTCSWIGCDVCGHWCHLDC-ALRHELIGTGPSVKGSIGTLDMQFHCRACGKTS 193 (446)
T ss_pred CccccCCcccCCCCeeEEeccCCCceehhhh-hcccccccCCccCCCCCccCceEEEccCCCChh
Confidence 68888764332 4557899999999999999 43321 100011111245678888887654
No 222
>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]
Probab=34.65 E-value=17 Score=40.27 Aligned_cols=18 Identities=39% Similarity=1.077 Sum_probs=15.3
Q ss_pred cccCCCcc-ceeeeccccc
Q psy11602 574 QECDAGMC-RTYFHVTCAQ 591 (1083)
Q Consensus 574 ~~c~~~~c-~~~~H~~ca~ 591 (1083)
|+||...| +-|||.+|--
T Consensus 235 VaCDn~nCkrEWFH~~CVG 253 (271)
T COG5034 235 VACDNANCKREWFHLECVG 253 (271)
T ss_pred eecCCCCCchhheeccccc
Confidence 68999999 7899999943
No 223
>PF00130 C1_1: Phorbol esters/diacylglycerol binding domain (C1 domain); InterPro: IPR002219 Diacylglycerol (DAG) is an important second messenger. Phorbol esters (PE) are analogues of DAG and potent tumour promoters that cause a variety of physiological changes when administered to both cells and tissues. DAG activates a family of serine/threonine protein kinases, collectively known as protein kinase C (PKC) []. Phorbol esters can directly stimulate PKC. The N-terminal region of PKC, known as C1, has been shown [] to bind PE and DAG in a phospholipid and zinc-dependent fashion. The C1 region contains one or two copies (depending on the isozyme of PKC) of a cysteine-rich domain, which is about 50 amino-acid residues long, and which is essential for DAG/PE-binding. The DAG/PE-binding domain binds two zinc ions; the ligands of these metal ions are probably the six cysteines and two histidines that are conserved in this domain.; GO: 0035556 intracellular signal transduction; PDB: 1RFH_A 2FNF_X 3PFQ_A 1PTQ_A 1PTR_A 2VRW_B 1XA6_A 2ENN_A 1TBN_A 1TBO_A ....
Probab=34.31 E-value=23 Score=29.43 Aligned_cols=34 Identities=24% Similarity=0.430 Sum_probs=27.2
Q ss_pred ccccccccccCCC--CCCcceecCccCCCccccCCC
Q psy11602 1035 VLSHKCGLCHLSH--DPHTMAKCDTCHLYYHLACLD 1068 (1083)
Q Consensus 1035 ~~~~~c~~C~~~~--~~~~~~~Cd~C~~~yH~~Cl~ 1068 (1083)
..+..|.+|++.- ....-+.|..|....|..|++
T Consensus 9 ~~~~~C~~C~~~i~g~~~~g~~C~~C~~~~H~~C~~ 44 (53)
T PF00130_consen 9 SKPTYCDVCGKFIWGLGKQGYRCSWCGLVCHKKCLS 44 (53)
T ss_dssp SSTEB-TTSSSBECSSSSCEEEETTTT-EEETTGGC
T ss_pred CCCCCCcccCcccCCCCCCeEEECCCCChHhhhhhh
Confidence 3567899998876 567789999999999999986
No 224
>PRK06253 O-phosphoseryl-tRNA synthetase; Reviewed
Probab=33.77 E-value=1.9e+02 Score=35.83 Aligned_cols=144 Identities=13% Similarity=0.220 Sum_probs=74.6
Q ss_pred eEecCChHHHHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHHHHHHHHHHH
Q psy11602 22 YLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESWKMLDEMIQ 101 (1083)
Q Consensus 22 ~L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s~~~~~~~~~ 101 (1083)
+|++|-=-.+....+ ..++.+..|++|+-++++||.+.. .+.. ++..+..... +..+. .. .|..+..
T Consensus 185 vLRtSLlPGLL~tLs-~Nl~Rg~~piRLFEIGRVFr~d~~---eE~t---~La~llsGs~--W~~~e--~v--DFfDlKG 251 (529)
T PRK06253 185 TLRSHMTSGWFITLS-SLLEKRPLPIKLFSIDRCFRREQR---EDAS---RLMTYHSASC--VIADE--DV--TVDDGKA 251 (529)
T ss_pred ccccchHHHHHHHHH-HHHhCCCCCEEEEEEeeEEecCCc---cchh---heeEEEEccc--cccCC--CC--CHHHHHH
Confidence 455543333322222 234578999999999999987541 0111 1222221111 11122 12 3888999
Q ss_pred HHHHHHHHcCCc-eEEEEeccCCCCcccceeEeEEEEecCCCceeEEEEcCCCchhhhhcccceeccCCCccccccccch
Q psy11602 102 NSEEFYADLGIA-YRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQSRRLLVRYGQTKQKIYATACATT 180 (1083)
Q Consensus 102 ~y~~if~~LgLp-yrvv~~~sgdlg~~as~~~diE~~~P~~~~~~ev~s~s~cgdyqs~rl~i~y~~~~~~~n~tg~a~~ 180 (1083)
+.+.++..||++ ++........-..--..+.+|.+|.|..+++.+|+.+.-.---..+.++|.. .+....+.+.
T Consensus 252 iLE~LL~~LGI~~i~f~pse~~~p~fHPGRSAeI~v~hp~~dGwkeIG~fGELHP~VLk~fDI~~-----pV~aFELDLE 326 (529)
T PRK06253 252 VAEGLLSQFGFTKFKFRPDEKRSKYYTPDTQTEVYAYHPKLDGWVEVATFGIYSPVALAEYGIDV-----PVMNLGLGVE 326 (529)
T ss_pred HHHHHHHHcCCCeEEEeecccCCCCcCCCeEEEEEEEeecCCCCEEEEEEEEECHHHHHHcCCCC-----ceEEEEEeHH
Confidence 999999999997 4442210011111223455667777876666667654433333344445431 1334445555
Q ss_pred hhe
Q psy11602 181 RVI 183 (1083)
Q Consensus 181 Rli 183 (1083)
|++
T Consensus 327 rL~ 329 (529)
T PRK06253 327 RLA 329 (529)
T ss_pred HHH
Confidence 554
No 225
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=32.37 E-value=11 Score=34.76 Aligned_cols=32 Identities=31% Similarity=0.746 Sum_probs=23.3
Q ss_pred ccccccccccCCCCCcceeecccccccccccCC------------Cccceeeeccccc
Q psy11602 546 PICAVHRDSWLPEASLPIRYLGVSTCFRQECDA------------GMCRTYFHVTCAQ 591 (1083)
Q Consensus 546 ~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~------------~~c~~~~H~~ca~ 591 (1083)
-.|+||+..+- |.. +.|.+ |.|+|-||.||-+
T Consensus 21 d~CaICRnhim---~~C-----------~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~ 64 (88)
T COG5194 21 DVCAICRNHIM---GTC-----------PECQFGMTPGDECPVVWGVCNHAFHDHCIY 64 (88)
T ss_pred chhhhhhcccc---CcC-----------cccccCCCCCCcceEEEEecchHHHHHHHH
Confidence 47999985542 333 46666 6799999999977
No 226
>PF14768 RPA_interact_C: Replication protein A interacting C-terminal
Probab=31.03 E-value=66 Score=29.79 Aligned_cols=28 Identities=25% Similarity=0.765 Sum_probs=23.6
Q ss_pred eeccccCCCCCCCCceeeccCCCCccccc
Q psy11602 632 VCCVCLGERSDDVNEIVECDSCGVTVHEV 660 (1083)
Q Consensus 632 ~c~~c~g~~~~~~~~l~~C~~Cg~~~h~~ 660 (1083)
+|-+|.......-+..+.| +||.++...
T Consensus 1 iCPVC~~~~L~~~~~~i~C-~Cgl~l~~~ 28 (82)
T PF14768_consen 1 ICPVCQKGNLRENSNVISC-SCGLRLNTQ 28 (82)
T ss_pred CCCccCCCcccccCCeEEC-CCccEEecC
Confidence 4889999888888889999 888888665
No 227
>PRK04172 pheS phenylalanyl-tRNA synthetase subunit alpha; Provisional
Probab=29.77 E-value=1.8e+02 Score=35.86 Aligned_cols=118 Identities=16% Similarity=0.168 Sum_probs=73.5
Q ss_pred hhhcccccccccccCcCceeEEEeeeEEEEEEeCCCchhHHHHHHHHHHHHHHHHHHhCCc-EEEEeccCCCcchhhhce
Q psy11602 290 EMIQNSEEFYADLDTRGIFRVHQFEKVEQFVLTSPHDDESWKTLDEMIQNSEEFYADLGIA-YRVVNIVSGALNHAAAKK 368 (1083)
Q Consensus 290 ~~~~~~~~~~~~~~trGl~Rvhqf~kvE~f~~~~~~~~~s~~~~e~~~~~~e~~~~~L~lp-yRvv~~~~~dl~~~a~~~ 368 (1083)
+++....+||+....++-+ +||..++...+-.+. -|.+++..+++|+..||++ +++. ++..-.. .-.
T Consensus 352 rlFeiGrVFR~e~~d~~~l--~Ef~ql~~~i~G~~~------~f~elkg~l~~ll~~lGi~~~~~~--~~~~p~~--~P~ 419 (489)
T PRK04172 352 KYFSIGRVFRPDTIDATHL--PEFYQLEGIVMGEDV------SFRDLLGILKEFYKRLGFEEVKFR--PAYFPFT--EPS 419 (489)
T ss_pred EEEEecceEcCCCCCcccC--CchheEEEEEEeCCC------CHHHHHHHHHHHHHHhCCceEEEc--CCcCCCC--CCe
Confidence 5566677888765444433 699998877777642 2788999999999999995 5542 2211111 333
Q ss_pred eeEEEeeCCCCcEEeeecccCcccccccccceEEecccCCCCceeeEEeecccccchhHHHHHHHh
Q psy11602 369 LDLEAWFPGSGAFRELVSCSNCLAYQSRRLLVRYGQTKKMNEKIEFVHMLNATACATTRVICAILE 434 (1083)
Q Consensus 369 ~DiE~w~P~~~~y~Ev~S~sn~~d~qarrl~iry~~~~~~~~~~~~~htln~t~~a~~R~i~ailE 434 (1083)
..++++.++.+ |.||+-+.-..---.+.++|.. .-| +-++.+.|++...+.
T Consensus 420 ~~~~i~~~g~~-w~eiG~~G~l~Pevl~~~gi~~---------~v~-----~~el~le~l~m~~~~ 470 (489)
T PRK04172 420 VEVEVYHEGLG-WVELGGAGIFRPEVLEPLGIDV---------PVL-----AWGLGIERLAMLRLG 470 (489)
T ss_pred EEEEEEECCCC-eEEEEeccccCHHHHHHCCCCC---------ceE-----EEEEcHHHHHHHHhC
Confidence 55677777655 8999876655444445555522 112 445667777655443
No 228
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=29.61 E-value=14 Score=33.90 Aligned_cols=50 Identities=20% Similarity=0.588 Sum_probs=25.2
Q ss_pred CccccccCCC--CCCCCCcEEEcccCCcccccccccccccCCCcccCCCCCCCCcccccccCC
Q psy11602 691 ILVCCVCLGE--RSDDVNEIVECDSCGVTVHEGCYGVQDTASISSTVSSCSTEPWFCESCRAG 751 (1083)
Q Consensus 691 ~~~C~VC~~~--~~~~~n~iv~Cd~C~i~VH~~CYGv~~~~~~~~~~~~~~~~~W~Cd~C~~~ 751 (1083)
..+|.||... -..+++.+|-|..|+-.|=..||--... ++.-.|..|...
T Consensus 9 ~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErk-----------eg~q~CpqCkt~ 60 (80)
T PF14569_consen 9 GQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERK-----------EGNQVCPQCKTR 60 (80)
T ss_dssp S-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHH-----------TS-SB-TTT--B
T ss_pred CcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhh-----------cCcccccccCCC
Confidence 3499999864 3347889999999999999999987653 566777777754
No 229
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=28.23 E-value=39 Score=36.59 Aligned_cols=35 Identities=23% Similarity=0.698 Sum_probs=28.1
Q ss_pred CCccccccCCCCC---CCCCcEEEcccCCccccccccc
Q psy11602 690 KILVCCVCLGERS---DDVNEIVECDSCGVTVHEGCYG 724 (1083)
Q Consensus 690 ~~~~C~VC~~~~~---~~~n~iv~Cd~C~i~VH~~CYG 724 (1083)
..-+|.+|.+.+. -+.+..+.|.+|+-.+|..|+.
T Consensus 151 kGfiCe~C~~~~~IfPF~~~~~~~C~~C~~v~H~~C~~ 188 (202)
T PF13901_consen 151 KGFICEICNSDDIIFPFQIDTTVRCPKCKSVFHKSCFR 188 (202)
T ss_pred CCCCCccCCCCCCCCCCCCCCeeeCCcCccccchhhcC
Confidence 3458999986522 2667899999999999999986
No 230
>PF03107 C1_2: C1 domain; InterPro: IPR004146 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in DAG_PE-bind (IPR002219 from INTERPRO), therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol. This family are found in plant proteins.
Probab=27.80 E-value=43 Score=24.97 Aligned_cols=28 Identities=25% Similarity=0.711 Sum_probs=23.8
Q ss_pred ccccccCCCCCCcceecCccCCCccccC
Q psy11602 1039 KCGLCHLSHDPHTMAKCDTCHLYYHLAC 1066 (1083)
Q Consensus 1039 ~c~~C~~~~~~~~~~~Cd~C~~~yH~~C 1066 (1083)
.|.+|++..+....-.|+.|+-..|..|
T Consensus 2 ~C~~C~~~~~~~~~Y~C~~c~f~lh~~C 29 (30)
T PF03107_consen 2 WCDVCRRKIDGFYFYHCSECCFTLHVRC 29 (30)
T ss_pred CCCCCCCCcCCCEeEEeCCCCCeEcCcc
Confidence 5899988887665888999998888887
No 231
>COG3705 HisZ ATP phosphoribosyltransferase involved in histidine biosynthesis [Amino acid transport and metabolism]
Probab=26.28 E-value=89 Score=37.30 Aligned_cols=97 Identities=21% Similarity=0.212 Sum_probs=71.5
Q ss_pred CCCCCCCCeeEecCChHHHHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeE--EEEEEEeCCCch
Q psy11602 13 PEKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEK--VEQFVLTSPHDD 90 (1083)
Q Consensus 13 ~~dr~~~~~~L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~--~e~~~~~~~~~e 90 (1083)
++|..++.++|+|==-.+|+-++...... .|+||+-.+..||...+-+| |..||.. +|.|.+....
T Consensus 65 l~d~~g~~l~LRpD~T~pVaR~~~~~~~~---~P~Rl~Y~G~Vfr~~~~~~g-------~~~Ef~QaGiEllG~~~~~-- 132 (390)
T COG3705 65 LEDETGGRLGLRPDFTIPVARIHATLLAG---TPLRLSYAGKVFRAREGRHG-------RRAEFLQAGIELLGDDSAA-- 132 (390)
T ss_pred EecCCCCeEEecccccHHHHHHHHHhcCC---CCceeeecchhhhcchhccC-------cccchhhhhhHHhCCCcch--
Confidence 67888889999999999999888865555 99999999999999865555 5568875 5677764433
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCceEEEEeccCCCC
Q psy11602 91 ESWKMLDEMIQNSEEFYADLGIAYRVVNIVSGALN 125 (1083)
Q Consensus 91 ~s~~~~~~~~~~y~~if~~LgLpyrvv~~~sgdlg 125 (1083)
|+ -|++...-..++.+|++=..+.+..-.++
T Consensus 133 -AD---aEvi~la~~~L~~~gl~~~~l~LG~~gif 163 (390)
T COG3705 133 -AD---AEVIALALAALKALGLADLKLELGHAGIF 163 (390)
T ss_pred -hh---HHHHHHHHHHHHHcCCcCeEEEeccHHHH
Confidence 33 35677777889999977655555443333
No 232
>KOG1701|consensus
Probab=25.29 E-value=74 Score=37.96 Aligned_cols=48 Identities=23% Similarity=0.454 Sum_probs=28.8
Q ss_pred cCCccccccccccccc----CCCcccCCCCCCCCcccccccCCCCCCceeecCC
Q psy11602 713 SCGVTVHEGCYGVQDT----ASISSTVSSCSTEPWFCESCRAGIAEPTCELCPN 762 (1083)
Q Consensus 713 ~C~i~VH~~CYGv~~~----~~~~~~~~~~~~~~W~Cd~C~~~~~~~~C~LCp~ 762 (1083)
-||.+||-.|.....- ..+. .....+..-+|-.|-.....+.|.+|..
T Consensus 351 A~GkayHp~CF~Cv~C~r~ldgip--Ftvd~~n~v~Cv~dfh~kfAPrCs~C~~ 402 (468)
T KOG1701|consen 351 ALGKAYHPGCFTCVVCARCLDGIP--FTVDSQNNVYCVPDFHKKFAPRCSVCGN 402 (468)
T ss_pred hcccccCCCceEEEEeccccCCcc--ccccCCCceeeehhhhhhcCcchhhccC
Confidence 4678889888753210 0000 0111345567777777777789999987
No 233
>COG0016 PheS Phenylalanyl-tRNA synthetase alpha subunit [Translation, ribosomal structure and biogenesis]
Probab=24.98 E-value=2.3e+02 Score=33.26 Aligned_cols=120 Identities=16% Similarity=0.228 Sum_probs=78.2
Q ss_pred hhcccccccccccCcCceeEEEeeeEEEEEEeCCCchhHHHHHHHHHHHHHHHHHHhC-CcEEEEeccCCCcchhhhcee
Q psy11602 291 MIQNSEEFYADLDTRGIFRVHQFEKVEQFVLTSPHDDESWKTLDEMIQNSEEFYADLG-IAYRVVNIVSGALNHAAAKKL 369 (1083)
Q Consensus 291 ~~~~~~~~~~~~~trGl~Rvhqf~kvE~f~~~~~~~~~s~~~~e~~~~~~e~~~~~L~-lpyRvv~~~~~dl~~~a~~~~ 369 (1083)
++....+||.. +-.--..++|+.||-+++-..- -|..|...-++|++.|+ ..-.|--.|+ -++=-.=.+
T Consensus 195 ~~~~grvyR~D--~~DaTHs~~FhQiEGlvvd~~~------s~~~Lkg~L~~f~~~~fg~~~~vRfrps--yFPFTEPS~ 264 (335)
T COG0016 195 IFSPGRVYRND--TVDATHSPEFHQIEGLVVDKNI------SFADLKGTLEEFAKKFFGEDVKVRFRPS--YFPFTEPSA 264 (335)
T ss_pred EecccceecCC--CCCcccchheeeeEEEEEeCCc------cHHHHHHHHHHHHHHhcCCCcceEeecC--CCCCCCCeE
Confidence 44444566553 3334567899999998888774 26778888899999888 3323333332 233344567
Q ss_pred eEEEeeCCCCcEEeeecccCcccccccccceEEecccCCCCceeeEEeecccccchhHHHHH
Q psy11602 370 DLEAWFPGSGAFRELVSCSNCLAYQSRRLLVRYGQTKKMNEKIEFVHMLNATACATTRVICA 431 (1083)
Q Consensus 370 DiE~w~P~~~~y~Ev~S~sn~~d~qarrl~iry~~~~~~~~~~~~~htln~t~~a~~R~i~a 431 (1083)
.++||.|+.++|.||.-|.-..---=+.++| +. +.-..| +-|+.+.|+.--
T Consensus 265 Evdv~~~~~~~WlEi~G~Gmv~P~VL~~~G~---~~---~~~~Gf-----AfGlGlERlAML 315 (335)
T COG0016 265 EVDVYCPGCGGWLEILGCGMVHPNVLEAVGI---DP---EEYSGF-----AFGLGLERLAML 315 (335)
T ss_pred EEEEEEcCCCCEEEEecccccCHHHHHhcCC---CC---CcceEE-----EEeecHHHHHHH
Confidence 8999999999999999888766555555554 11 001123 667888996543
No 234
>COG0017 AsnS Aspartyl/asparaginyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=24.72 E-value=70 Score=38.58 Aligned_cols=55 Identities=16% Similarity=0.288 Sum_probs=40.2
Q ss_pred eEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHHHHHHHHHH-HHHHHHHHH
Q psy11602 48 RYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESWKMLDEMI-QNSEEFYAD 109 (1083)
Q Consensus 48 klyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s~~~~~~~~-~~y~~if~~ 109 (1083)
|+|-+++.||.|. .+|+- .+.||.|+|.=....+. ++..++.++|+ .+.+++++.
T Consensus 201 rVf~igP~FRAE~----s~T~R--HL~EF~~ld~Emaf~~~-~d~m~l~E~~i~~i~~~v~e~ 256 (435)
T COG0017 201 RVFTIGPTFRAEK----SNTRR--HLSEFWMLDPEMAFADL-NDVMDLAEELIKYLFKKVLEE 256 (435)
T ss_pred ceEEecCceecCC----CCCcc--hhhhHheecceeccCcH-HHHHHHHHHHHHHHHHHHHHH
Confidence 6899999999999 33432 58899999976655554 66788777777 455566554
No 235
>PRK12421 ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=24.31 E-value=79 Score=37.70 Aligned_cols=57 Identities=11% Similarity=0.005 Sum_probs=41.8
Q ss_pred hhhcccccccccccCcCcee-EEEeeeEEEEEEeCCCchhHHHHHHHHHHHHHHHHHHhCCc-EEE
Q psy11602 290 EMIQNSEEFYADLDTRGIFR-VHQFEKVEQFVLTSPHDDESWKTLDEMIQNSEEFYADLGIA-YRV 353 (1083)
Q Consensus 290 ~~~~~~~~~~~~~~trGl~R-vhqf~kvE~f~~~~~~~~~s~~~~e~~~~~~e~~~~~L~lp-yRv 353 (1083)
+++....+||+....+|-+| .||+. ||.|+...+. .+ .|+|..+.++|+.|||+ |++
T Consensus 103 R~~Y~g~VfR~~~~~~gr~rEf~Q~G-vEiiG~~~~~-aD-----aEvi~l~~e~l~~lgi~~~~l 161 (392)
T PRK12421 103 RLCYAGSVLHTLPQGLFGSRTPLQLG-AELYGHAGIE-AD-----LEIIRLMLGLLRNAGVPALHL 161 (392)
T ss_pred EEEEeeeEEEcCCCcCCCcCccceec-eEEeCCCCch-hH-----HHHHHHHHHHHHHcCCCCeEE
Confidence 56666678888777788666 35665 8999876663 22 46899999999999996 444
No 236
>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A ....
Probab=23.64 E-value=33 Score=24.64 Aligned_cols=18 Identities=28% Similarity=0.418 Sum_probs=15.1
Q ss_pred ccccCCcc-cccccccccC
Q psy11602 539 LIATSEQP-ICAVHRDSWL 556 (1083)
Q Consensus 539 ~~~~~~~~-~c~~~~~~~~ 556 (1083)
.+.++++| .|..|++.+.
T Consensus 7 ~~H~~~k~~~C~~C~k~F~ 25 (26)
T PF13465_consen 7 RTHTGEKPYKCPYCGKSFS 25 (26)
T ss_dssp HHHSSSSSEEESSSSEEES
T ss_pred hhcCCCCCCCCCCCcCeeC
Confidence 36789999 9999998775
No 237
>PF03462 PCRF: PCRF domain; InterPro: IPR005139 This domain is found in peptide chain release factors. Peptide chain release factors are important for protein synthesis since they direct the termination of translation in response to the peptide chain termination codons UAG and UAA. These are structurally distinct but both contain the PCRF domain [].; GO: 0016149 translation release factor activity, codon specific, 0006415 translational termination, 0005737 cytoplasm; PDB: 3D5A_X 3D5C_X 3MR8_V 3MS0_V 3F1G_X 3F1E_X 1ZBT_A 2IHR_1 2X9R_Y 2X9T_Y ....
Probab=23.15 E-value=2.1e+02 Score=28.14 Aligned_cols=45 Identities=16% Similarity=0.286 Sum_probs=35.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHcCCceEEEEeccCCCCcccceeEeE
Q psy11602 90 DESWKMLDEMIQNSEEFYADLGIAYRVVNIVSGALNHAAAKKLDL 134 (1083)
Q Consensus 90 e~s~~~~~~~~~~y~~if~~LgLpyrvv~~~sgdlg~~as~~~di 134 (1083)
.+|.-+-.+++..|.+++++.|..|.+++...++.|+--+-++.|
T Consensus 59 ~EA~lfa~~L~~MY~~~a~~~gw~~~~l~~~~~~~~G~k~a~~~I 103 (115)
T PF03462_consen 59 DEACLFAEELFRMYQRYAERRGWKVEVLDYSPGEEGGIKSATLEI 103 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT-EEEEEEEEE-SSSSEEEEEEEE
T ss_pred hHHHHHHHHHHHHHHHHHHHcCCEEEEEecCCCCccceeEEEEEE
Confidence 568888999999999999999999999999999997554443333
No 238
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=22.71 E-value=30 Score=27.63 Aligned_cols=32 Identities=31% Similarity=0.646 Sum_probs=23.8
Q ss_pred cccccCCCCCCCCCcEEEcccCCccccccccccc
Q psy11602 693 VCCVCLGERSDDVNEIVECDSCGVTVHEGCYGVQ 726 (1083)
Q Consensus 693 ~C~VC~~~~~~~~n~iv~Cd~C~i~VH~~CYGv~ 726 (1083)
.|.||++.-. .++.++... |+-.+|..|...-
T Consensus 2 ~C~IC~~~~~-~~~~~~~l~-C~H~fh~~Ci~~~ 33 (44)
T PF13639_consen 2 ECPICLEEFE-DGEKVVKLP-CGHVFHRSCIKEW 33 (44)
T ss_dssp CETTTTCBHH-TTSCEEEET-TSEEEEHHHHHHH
T ss_pred CCcCCChhhc-CCCeEEEcc-CCCeeCHHHHHHH
Confidence 6999997543 356666666 9999999996643
No 239
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=22.56 E-value=66 Score=34.84 Aligned_cols=37 Identities=24% Similarity=0.645 Sum_probs=29.2
Q ss_pred cccccccCCCC-----CCcceecCccCCCccccCCCCCCCCCCC
Q psy11602 1038 HKCGLCHLSHD-----PHTMAKCDTCHLYYHLACLDPPLLRMPK 1076 (1083)
Q Consensus 1038 ~~c~~C~~~~~-----~~~~~~Cd~C~~~yH~~Cl~Ppl~~~P~ 1076 (1083)
..|++|..++- .+.+..|+.|...||..|... ..=||
T Consensus 153 fiCe~C~~~~~IfPF~~~~~~~C~~C~~v~H~~C~~~--~~Cpk 194 (202)
T PF13901_consen 153 FICEICNSDDIIFPFQIDTTVRCPKCKSVFHKSCFRK--KSCPK 194 (202)
T ss_pred CCCccCCCCCCCCCCCCCCeeeCCcCccccchhhcCC--CCCCC
Confidence 46899987632 458999999999999999985 55555
No 240
>smart00547 ZnF_RBZ Zinc finger domain. Zinc finger domain in Ran-binding proteins (RanBPs), and other proteins. In RanBPs, this domain binds RanGDP.
Probab=22.24 E-value=40 Score=23.96 Aligned_cols=22 Identities=23% Similarity=0.635 Sum_probs=17.0
Q ss_pred CCcccccccC--CCCCCceeecCC
Q psy11602 741 EPWFCESCRA--GIAEPTCELCPN 762 (1083)
Q Consensus 741 ~~W~Cd~C~~--~~~~~~C~LCp~ 762 (1083)
+.|.|..|.+ ......|..|..
T Consensus 1 g~W~C~~C~~~N~~~~~~C~~C~~ 24 (26)
T smart00547 1 GDWECPACTFLNFASRSKCFACGA 24 (26)
T ss_pred CcccCCCCCCcChhhhccccccCC
Confidence 4799999954 456788988875
No 241
>PF01841 Transglut_core: Transglutaminase-like superfamily; InterPro: IPR002931 This domain is found in many proteins known to have transglutaminase activity, i.e. which cross-link proteins through an acyl-transfer reaction between the gamma-carboxamide group of peptide-bound glutamine and the epsilon-amino group of peptide-bound lysine, resulting in a epsilon-(gamma-glutamyl)lysine isopeptide bond. Tranglutaminases have been found in a diverse range of species, from bacteria through to mammals. The enzymes require calcium binding and their activity leads to post-translational modification of proteins through acyl-transfer reactions, involving peptidyl glutamine residues as acyl donors and a variety of primary amines as acyl acceptors, with the generation of proteinase resistant isopeptide bonds []. Sequence conservation in this superfamily primarily involves three motifs that centre around conserved cysteine, histidine, and aspartate residues that form the catalytic triad in the structurally characterised transglutaminase, the human blood clotting factor XIIIa' []. On the basis of the experimentally demonstrated activity of the Methanobacterium phage psiM2 pseudomurein endoisopeptidase [], it is proposed that many, if not all, microbial homologs of the transglutaminases are proteases and that the eukaryotic transglutaminases have evolved from an ancestral protease []. A subunit of plasma Factor XIII revealed that each Factor XIIIA subunit is composed of four domains (termed N-terminal beta-sandwich, core domain (containing the catalytic and the regulatory sites), and C-terminal beta-barrels 1 and 2) and that two monomers assemble into the native dimer through the surfaces in domains 1 and 2, in opposite orientation. This organisation in four domains is highly conserved during evolution among transglutaminase isoforms [].; PDB: 2F4M_A 2F4O_A 1GGY_B 1FIE_B 1GGU_B 1GGT_B 1F13_A 1QRK_B 1EVU_A 1EX0_B ....
Probab=22.07 E-value=1.6e+02 Score=27.60 Aligned_cols=49 Identities=20% Similarity=0.243 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHhCCcEEEEeccCCCc-------chhhhceeeEEEeeCCCCcEEee
Q psy11602 335 EMIQNSEEFYADLGIAYRVVNIVSGAL-------NHAAAKKLDLEAWFPGSGAFREL 384 (1083)
Q Consensus 335 ~~~~~~e~~~~~L~lpyRvv~~~~~dl-------~~~a~~~~DiE~w~P~~~~y~Ev 384 (1083)
++-.....+++.+|||-|+|......- ......-.=.|||+| .++|.-+
T Consensus 56 ~~a~l~~allr~~Gipar~v~g~~~~~~~~~~~~~~~~~~H~w~ev~~~-~~~W~~~ 111 (113)
T PF01841_consen 56 DYASLFVALLRALGIPARVVSGYVKGPDPDGDYSVDGNDNHAWVEVYLP-GGGWIPL 111 (113)
T ss_dssp HHHHHHHHHHHHHT--EEEEEEEEEECSSTTCTSTSSEEEEEEEEEEET-TTEEEEE
T ss_pred HHHHHHHHHHhhCCCceEEEEEEcCCccccccccCCCCCCEEEEEEEEc-CCcEEEc
Confidence 456667788999999999997655432 122233456788885 4556643
No 242
>PF11781 RRN7: RNA polymerase I-specific transcription initiation factor Rrn7; InterPro: IPR021752 Rrn7 is a transcription binding factor that associates strongly with both Rrn6 and Rrn11 to form a complex which itself binds the TATA-binding protein and is required for transcription by the core domain of the RNA PolI promoter [],[].
Probab=21.15 E-value=52 Score=25.88 Aligned_cols=25 Identities=28% Similarity=0.521 Sum_probs=20.7
Q ss_pred cccccCCCCCCCCCcEEEcccCCcc
Q psy11602 693 VCCVCLGERSDDVNEIVECDSCGVT 717 (1083)
Q Consensus 693 ~C~VC~~~~~~~~n~iv~Cd~C~i~ 717 (1083)
.|.+|.+......+-..+|+.||..
T Consensus 10 ~C~~C~~~~~~~~dG~~yC~~cG~~ 34 (36)
T PF11781_consen 10 PCPVCGSRWFYSDDGFYYCDRCGHQ 34 (36)
T ss_pred cCCCCCCeEeEccCCEEEhhhCceE
Confidence 5999998766678899999999854
No 243
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=20.97 E-value=1.6e+02 Score=25.75 Aligned_cols=25 Identities=12% Similarity=0.258 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHhCCcEEEEeccCCC
Q psy11602 336 MIQNSEEFYADLGIAYRVVNIVSGA 360 (1083)
Q Consensus 336 ~~~~~e~~~~~L~lpyRvv~~~~~d 360 (1083)
.-..|.++|+++++||..+++...+
T Consensus 13 ~C~~ak~~L~~~~i~~~~~~v~~~~ 37 (72)
T cd03029 13 FCARAKAALQENGISYEEIPLGKDI 37 (72)
T ss_pred HHHHHHHHHHHcCCCcEEEECCCCh
Confidence 4567888999999999999886443
No 244
>KOG1169|consensus
Probab=20.47 E-value=47 Score=41.60 Aligned_cols=74 Identities=27% Similarity=0.349 Sum_probs=43.6
Q ss_pred eeeccCCCCcccccchhhhHHH---HHHhhhhc-----ccceecccccCCCCCccccccCCCC-CCCCCcEEEcccCCcc
Q psy11602 647 IVECDSCGVTVHEVKIQQEFLA---IKFLIRYL-----LFWFQLEDFSKFSKILVCCVCLGER-SDDVNEIVECDSCGVT 717 (1083)
Q Consensus 647 l~~C~~Cg~~~h~~~~~~~~~~---i~~~~~~~-----~~W~~~~d~~~~~~~~~C~VC~~~~-~~~~n~iv~Cd~C~i~ 717 (1083)
...|+=||.++|..|.-.-... .....+.+ --|+.+ ......|+.|.... ....-++..|.-|.+.
T Consensus 129 g~~C~~C~~~vh~~C~~~~~~~~~~~~~~~~~r~~v~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~ 203 (634)
T KOG1169|consen 129 GLCCDWCGRTVHERCVRRADPECQCKCDLGRLRKIVLDHPWVKG-----NAGEAKCDQCLKSVKADQGLTGPRCGWCQIR 203 (634)
T ss_pred ceeeccccchHHHHHHhhcCcccccccccccccceeecCccccc-----ccCCccchhhhccccccccccccccceeeee
Confidence 6899999999999986421111 00000000 012221 12345777776432 2234468899999999
Q ss_pred cccccccc
Q psy11602 718 VHEGCYGV 725 (1083)
Q Consensus 718 VH~~CYGv 725 (1083)
||-.|+..
T Consensus 204 ~h~~~~~~ 211 (634)
T KOG1169|consen 204 VHDKCKSE 211 (634)
T ss_pred eecchHHH
Confidence 99999874
Done!