RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11602
(1083 letters)
>3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A
{Homo sapiens}
Length = 522
Score = 380 bits (977), Expect = e-120
Identities = 159/251 (63%), Positives = 191/251 (76%), Gaps = 16/251 (6%)
Query: 4 KGEKVGDSAPEKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSH 63
K G + + D+KYLIATSEQPI A+HRD WL LPI+Y G+STCFRQEVGSH
Sbjct: 249 KVIGKGSEKSDDNSYDEKYLIATSEQPIAALHRDEWLRPEDLPIKYAGLSTCFRQEVGSH 308
Query: 64 GRDTRGIFRVHQFEKVEQFVLTSPHDDESWKMLDEMIQNSEEFYADLGIAYRVVNIVSGA 123
GRDTRGIFRVHQFEK+EQFV +SPHD++SW+M +EMI +EEFY LGI Y +VNIVSG+
Sbjct: 309 GRDTRGIFRVHQFEKIEQFVYSSPHDNKSWEMFEEMITTAEEFYQSLGIPYHIVNIVSGS 368
Query: 124 LNHAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQSRRLLVRYGQTKQ----KIY-----A 174
LNHAA+KKLDLEAWFPGSGAFRELVSCSNC DYQ+RRL +RYGQTK+ + A
Sbjct: 369 LNHAASKKLDLEAWFPGSGAFRELVSCSNCTDYQARRLRIRYGQTKKMMDKVEFVHMLNA 428
Query: 175 TACATTRVICAILETHQTETGVRIPDCLRKFVPAVYLNEAGE--IPFVKTAPIDEEETKK 232
T CATTR ICAILE +QTE G+ +P+ L++ ++ + IPFVK API++E +KK
Sbjct: 429 TMCATTRTICAILENYQTEKGITVPEKLKE-----FMPPGLQELIPFVKPAPIEQEPSKK 483
Query: 233 QKKQKEGMKKK 243
QKKQ EG KKK
Sbjct: 484 QKKQHEGSKKK 494
Score = 310 bits (797), Expect = 7e-95
Identities = 132/198 (66%), Positives = 159/198 (80%), Gaps = 3/198 (1%)
Query: 303 DTRGIFRVHQFEKVEQFVLTSPHDDESWKTLDEMIQNSEEFYADLGIAYRVVNIVSGALN 362
DTRGIFRVHQFEK+EQFV +SPHD++SW+ +EMI +EEFY LGI Y +VNIVSG+LN
Sbjct: 311 DTRGIFRVHQFEKIEQFVYSSPHDNKSWEMFEEMITTAEEFYQSLGIPYHIVNIVSGSLN 370
Query: 363 HAAAKKLDLEAWFPGSGAFRELVSCSNCLAYQSRRLLVRYGQTKKMNEKIEFVHMLNATA 422
HAA+KKLDLEAWFPGSGAFRELVSCSNC YQ+RRL +RYGQTKKM +K+EFVHMLNAT
Sbjct: 371 HAASKKLDLEAWFPGSGAFRELVSCSNCTDYQARRLRIRYGQTKKMMDKVEFVHMLNATM 430
Query: 423 CATTRVICAILETHQTETGVRIPDCLRKFVPAVYVNEAGEIPFVKTAPIDEEETKKQKKQ 482
CATTR ICAILE +QTE G+ +P+ L++F+P IPFVK API++E +KKQKKQ
Sbjct: 431 CATTRTICAILENYQTEKGITVPEKLKEFMPPGLQE---LIPFVKPAPIEQEPSKKQKKQ 487
Query: 483 KEGMKKKVLIDEAMIQNE 500
EG KKK + ++N
Sbjct: 488 HEGSKKKAAARDVTLENR 505
Score = 85.9 bits (213), Expect = 2e-17
Identities = 34/64 (53%), Positives = 41/64 (64%), Gaps = 2/64 (3%)
Query: 516 EVIGKGEKVGDSAPEKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQE 575
E + K G + + D+KYLIATSEQPI A+HRD WL LPI+Y G+STCFRQE
Sbjct: 245 EELYKVIGKGSEKSDDNSYDEKYLIATSEQPIAALHRDEWLRPEDLPIKYAGLSTCFRQE 304
Query: 576 CDAG 579
G
Sbjct: 305 --VG 306
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis,
CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA
synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A*
3qo8_A* 3qo5_A
Length = 485
Score = 362 bits (932), Expect = e-114
Identities = 127/234 (54%), Positives = 150/234 (64%), Gaps = 17/234 (7%)
Query: 16 DELDDKYLIATSEQPICAVHRDSWL--PEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRV 73
D D+KYLIATSEQPI A H W P LP+RY G S+CFR+E GSHG+D GIFRV
Sbjct: 236 DGEDEKYLIATSEQPISAYHAGEWFESPAEQLPVRYAGYSSCFRREAGSHGKDAWGIFRV 295
Query: 74 HQFEKVEQFVLTSPHDDESWKMLDEMIQNSEEFYADLGIAYRVVNIVSGALNHAAAKKLD 133
H FEK+EQFVLT P SW+ D MI SEEFY LG+ YRVV IVSG LN+AAAKK D
Sbjct: 296 HAFEKIEQFVLTEPEK--SWEEFDRMIGCSEEFYQSLGLPYRVVGIVSGELNNAAAKKYD 353
Query: 134 LEAWFPGSGAFRELVSCSNCLDYQSRRLLVRYGQTKQ----KIY-----ATACATTRVIC 184
LEAWFP ++ELVSCSNC DYQSR L +R G +Q K Y +T AT R IC
Sbjct: 354 LEAWFPFQQEYKELVSCSNCTDYQSRNLEIRCGIKQQNQQEKKYVHCLNSTLSATERTIC 413
Query: 185 AILETHQTETGVRIPDCLRKFVPAVYLNEAGEIPFVKTAPIDEEETKKQKKQKE 238
ILE +Q E G+ IP+ LRK++P E IP++K P + KK K +
Sbjct: 414 CILENYQKEDGLVIPEVLRKYIP----GEPEFIPYIKELPKNTTSVKKAKGKNP 463
Score = 299 bits (769), Expect = 3e-91
Identities = 97/197 (49%), Positives = 120/197 (60%), Gaps = 9/197 (4%)
Query: 303 DTRGIFRVHQFEKVEQFVLTSPHDDESWKTLDEMIQNSEEFYADLGIAYRVVNIVSGALN 362
D GIFRVH FEK+EQFVLT P SW+ D MI SEEFY LG+ YRVV IVSG LN
Sbjct: 288 DAWGIFRVHAFEKIEQFVLTEPEK--SWEEFDRMIGCSEEFYQSLGLPYRVVGIVSGELN 345
Query: 363 HAAAKKLDLEAWFPGSGAFRELVSCSNCLAYQSRRLLVRYGQTKKMNEKIEFVHMLNATA 422
+AAAKK DLEAWFP ++ELVSCSNC YQSR L +R G ++ ++ ++VH LN+T
Sbjct: 346 NAAAKKYDLEAWFPFQQEYKELVSCSNCTDYQSRNLEIRCGIKQQNQQEKKYVHCLNSTL 405
Query: 423 CATTRVICAILETHQTETGVRIPDCLRKFVPAVYVNEAGEIPFVKTAPIDEEETKKQKKQ 482
AT R IC ILE +Q E G+ IP+ LRK++P IP++K P + KK K +
Sbjct: 406 SATERTICCILENYQKEDGLVIPEVLRKYIPGEPE----FIPYIKELPKNTTSVKKAKGK 461
Query: 483 K---EGMKKKVLIDEAM 496
KK
Sbjct: 462 NPKNTTSVKKAKGKNGS 478
Score = 79.6 bits (197), Expect = 2e-15
Identities = 29/50 (58%), Positives = 33/50 (66%), Gaps = 4/50 (8%)
Query: 532 DELDDKYLIATSEQPICAVHRDSWL--PEASLPIRYLGVSTCFRQECDAG 579
D D+KYLIATSEQPI A H W P LP+RY G S+CFR+E AG
Sbjct: 236 DGEDEKYLIATSEQPISAYHAGEWFESPAEQLPVRYAGYSSCFRRE--AG 283
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase,
AARS, serrs, translation, ATP-binding,
nucleotide-binding, structural genomics; HET: ATP; 1.95A
{Trypanosoma brucei} PDB: 3lsq_A*
Length = 484
Score = 359 bits (923), Expect = e-113
Identities = 125/232 (53%), Positives = 148/232 (63%), Gaps = 17/232 (7%)
Query: 15 KDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVH 74
+ D KYLIATSE PI A HR W E P++Y G+STCFR+E G+HGRDT GIFRVH
Sbjct: 258 SGDGDKKYLIATSEMPIAAYHRGRWFTELKEPLKYAGMSTCFRKEAGAHGRDTLGIFRVH 317
Query: 75 QFEKVEQFVLTSPHDDESWKMLDEMIQNSEEFYADLGIAYRVVNIVSGALNHAAAKKLDL 134
QF+K+EQFV+ SP +ESW+ L++MI SEEF LG+ YRVVNI SGALN+AAAKK DL
Sbjct: 318 QFDKIEQFVVCSPRQEESWRHLEDMITTSEEFNKSLGLPYRVVNICSGALNNAAAKKYDL 377
Query: 135 EAWFPGSGAFRELVSCSNCLDYQSRRLLVRYGQTKQKIYA------------TACATTRV 182
EAWFP SGAFRELVSCSNC DYQS+ + RYG + A T CA TR
Sbjct: 378 EAWFPASGAFRELVSCSNCTDYQSQSVNCRYGPNLRGTAAQNVKEYCHMLNGTLCAITRT 437
Query: 183 ICAILETHQTETGVRIPDCLRKFVPAVYLNEAGEIPFVKTAPIDEEETKKQK 234
+C I E +QTE GV IPD LR Y+ I F A + K +
Sbjct: 438 MCCICENYQTEEGVVIPDVLRP-----YMMGIEMIRFENNAQAEGTTPDKGE 484
Score = 285 bits (732), Expect = 5e-86
Identities = 98/181 (54%), Positives = 119/181 (65%), Gaps = 8/181 (4%)
Query: 303 DTRGIFRVHQFEKVEQFVLTSPHDDESWKTLDEMIQNSEEFYADLGIAYRVVNIVSGALN 362
DT GIFRVHQF+K+EQFV+ SP +ESW+ L++MI SEEF LG+ YRVVNI SGALN
Sbjct: 309 DTLGIFRVHQFDKIEQFVVCSPRQEESWRHLEDMITTSEEFNKSLGLPYRVVNICSGALN 368
Query: 363 HAAAKKLDLEAWFPGSGAFRELVSCSNCLAYQSRRLLVRYG---QTKKMNEKIEFVHMLN 419
+AAAKK DLEAWFP SGAFRELVSCSNC YQS+ + RYG + E+ HMLN
Sbjct: 369 NAAAKKYDLEAWFPASGAFRELVSCSNCTDYQSQSVNCRYGPNLRGTAAQNVKEYCHMLN 428
Query: 420 ATACATTRVICAILETHQTETGVRIPDCLRKFVPAVYVNEAGEIPFVKTAPIDEEETKKQ 479
T CA TR +C I E +QTE GV IPD LR ++ + + I F A + K
Sbjct: 429 GTLCAITRTMCCICENYQTEEGVVIPDVLRPYMMGIEM-----IRFENNAQAEGTTPDKG 483
Query: 480 K 480
+
Sbjct: 484 E 484
Score = 83.9 bits (208), Expect = 7e-17
Identities = 27/49 (55%), Positives = 32/49 (65%), Gaps = 2/49 (4%)
Query: 531 KDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQECDAG 579
+ D KYLIATSE PI A HR W E P++Y G+STCFR+E AG
Sbjct: 258 SGDGDKKYLIATSEMPIAAYHRGRWFTELKEPLKYAGMSTCFRKE--AG 304
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: SSA; 2.60A {Pyrococcus
horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Length = 455
Score = 268 bits (688), Expect = 4e-80
Identities = 106/215 (49%), Positives = 138/215 (64%), Gaps = 15/215 (6%)
Query: 15 KDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVH 74
K E +D YLI T+E P+ +H + L LP+ Y+GVS CFR+E G+ G+DT+GIFRVH
Sbjct: 241 KVEDEDLYLIPTAEHPLAGMHANEILDGKDLPLLYVGVSPCFRKEAGTAGKDTKGIFRVH 300
Query: 75 QFEKVEQFVLTSPHDDESWKMLDEMIQNSEEFYADLGIAYRVVNIVSGALNHAAAKKLDL 134
QF KVEQFV + P +ESW+ +++I+N+EE + +L I YRVVNI +G L + AAKK D+
Sbjct: 301 QFHKVEQFVYSRP--EESWEWHEKIIRNAEELFQELEIPYRVVNICTGDLGYVAAKKYDI 358
Query: 135 EAWFPGSGAFRELVSCSNCLDYQSRRLLVRY---GQTKQKIYAT----ACATTRVICAIL 187
EAW PG G FRE+VS SNC D+Q+RRL +R+ K + T A AT+R I AIL
Sbjct: 359 EAWMPGQGKFREVVSASNCTDWQARRLNIRFRDRTDEKPRYVHTLNSTAIATSRAIVAIL 418
Query: 188 ETHQTETG-VRIPDCLRKFVPAVYLNEAGEIPFVK 221
E HQ E G VRIP L K Y +P K
Sbjct: 419 ENHQEEDGTVRIPKVLWK-----YTGFKEIVPVEK 448
Score = 208 bits (532), Expect = 9e-59
Identities = 84/150 (56%), Positives = 109/150 (72%), Gaps = 5/150 (3%)
Query: 303 DTRGIFRVHQFEKVEQFVLTSPHDDESWKTLDEMIQNSEEFYADLGIAYRVVNIVSGALN 362
DT+GIFRVHQF KVEQFV + P +ESW+ +++I+N+EE + +L I YRVVNI +G L
Sbjct: 292 DTKGIFRVHQFHKVEQFVYSRP--EESWEWHEKIIRNAEELFQELEIPYRVVNICTGDLG 349
Query: 363 HAAAKKLDLEAWFPGSGAFRELVSCSNCLAYQSRRLLVRYGQTKKMNEKIEFVHMLNATA 422
+ AAKK D+EAW PG G FRE+VS SNC +Q+RRL +R+ + +EK +VH LN+TA
Sbjct: 350 YVAAKKYDIEAWMPGQGKFREVVSASNCTDWQARRLNIRF--RDRTDEKPRYVHTLNSTA 407
Query: 423 CATTRVICAILETHQTETG-VRIPDCLRKF 451
AT+R I AILE HQ E G VRIP L K+
Sbjct: 408 IATSRAIVAILENHQEEDGTVRIPKVLWKY 437
Score = 69.6 bits (171), Expect = 2e-12
Identities = 23/49 (46%), Positives = 31/49 (63%), Gaps = 2/49 (4%)
Query: 531 KDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQECDAG 579
K E +D YLI T+E P+ +H + L LP+ Y+GVS CFR+E AG
Sbjct: 241 KVEDEDLYLIPTAEHPLAGMHANEILDGKDLPLLYVGVSPCFRKE--AG 287
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Length = 501
Score = 247 bits (632), Expect = 7e-72
Identities = 69/200 (34%), Positives = 113/200 (56%), Gaps = 8/200 (4%)
Query: 14 EKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRV 73
+ +D L T+E + D + LPIR + STC+R E + G++ G++RV
Sbjct: 270 DPSRFEDLNLAGTAEVGLAGYFMDHSVAFRDLPIRMVCSSTCYRAETDT-GKEPWGLYRV 328
Query: 74 HQFEKVEQFVLTSPHDDESWKMLDEMIQNSEEFYADLGIAYRVVNIVSGALNHAAAKKLD 133
H F KVE F +T P ++S ++L+E + E +LG+ +RV+++ + L A +K D
Sbjct: 329 HHFTKVEMFGVTGPGLEQSSELLEEFLSLQMEILTELGLHFRVLDMPTQELGLPAYRKFD 388
Query: 134 LEAWFPGSGAFRELVSCSNCLDYQSRRLLVRYGQTKQKIY------ATACATTRVICAIL 187
+EAW PG G F E+ S SNC D+QSRRL + + ++ AT CA R++ A+L
Sbjct: 389 IEAWMPGRGRFGEVTSASNCTDFQSRRLHIMFQTEAGELQFAHTVNATGCAVPRLLIALL 448
Query: 188 ETHQTETG-VRIPDCLRKFV 206
E++Q + G V +P L+ ++
Sbjct: 449 ESYQQKDGSVLVPPALQPYL 468
Score = 204 bits (521), Expect = 7e-57
Identities = 58/169 (34%), Positives = 97/169 (57%), Gaps = 4/169 (2%)
Query: 303 DTRGIFRVHQFEKVEQFVLTSPHDDESWKTLDEMIQNSEEFYADLGIAYRVVNIVSGALN 362
+ G++RVH F KVE F +T P ++S + L+E + E +LG+ +RV+++ + L
Sbjct: 321 EPWGLYRVHHFTKVEMFGVTGPGLEQSSELLEEFLSLQMEILTELGLHFRVLDMPTQELG 380
Query: 363 HAAAKKLDLEAWFPGSGAFRELVSCSNCLAYQSRRLLVRYGQTKKMNEKIEFVHMLNATA 422
A +K D+EAW PG G F E+ S SNC +QSRRL + + + +++F H +NAT
Sbjct: 381 LPAYRKFDIEAWMPGRGRFGEVTSASNCTDFQSRRLHIMF---QTEAGELQFAHTVNATG 437
Query: 423 CATTRVICAILETHQTETG-VRIPDCLRKFVPAVYVNEAGEIPFVKTAP 470
CA R++ A+LE++Q + G V +P L+ ++ + +P P
Sbjct: 438 CAVPRLLIALLESYQQKDGSVLVPPALQPYLGTDRITTPTHVPLQYIGP 486
Score = 63.1 bits (154), Expect = 2e-10
Identities = 16/50 (32%), Positives = 23/50 (46%)
Query: 530 EKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQECDAG 579
+ +D L T+E + D + LPIR + STC+R E D G
Sbjct: 270 DPSRFEDLNLAGTAEVGLAGYFMDHSVAFRDLPIRMVCSSTCYRAETDTG 319
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus
thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A*
1set_A* 1sry_A
Length = 421
Score = 240 bits (615), Expect = 2e-70
Identities = 75/199 (37%), Positives = 114/199 (57%), Gaps = 7/199 (3%)
Query: 15 KDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVH 74
D YL T+E + A+H LP +LP+RY G + FR E GS G+D RG+ RVH
Sbjct: 214 AIAETDLYLTGTAEVVLNALHSGEILPYEALPLRYAGYAPAFRSEAGSFGKDVRGLMRVH 273
Query: 75 QFEKVEQFVLTSPHDDESWKMLDEMIQNSEEFYADLGIAYRVVNIVSGALNHAAAKKLDL 134
QF KVEQ+VLT + S + E+++N+EE L + YR+V + +G + +++D+
Sbjct: 274 QFHKVEQYVLTEASLEASDRAFQELLENAEEILRLLELPYRLVEVATGDMGPGKWRQVDI 333
Query: 135 EAWFPGSGAFRELVSCSNCLDYQSRRLLVRY--GQTKQKIYAT----ACATTRVICAILE 188
E + P G +RE SCS LD+Q+RR +RY + + + T A AT R++ +LE
Sbjct: 334 EVYLPSEGRYRETHSCSALLDWQARRANLRYRDPEGRVRYAYTLNNTALATPRILAMLLE 393
Query: 189 THQTETG-VRIPDCLRKFV 206
HQ + G VR+P L ++
Sbjct: 394 NHQLQDGRVRVPQALIPYM 412
Score = 192 bits (491), Expect = 1e-53
Identities = 56/151 (37%), Positives = 90/151 (59%), Gaps = 4/151 (2%)
Query: 303 DTRGIFRVHQFEKVEQFVLTSPHDDESWKTLDEMIQNSEEFYADLGIAYRVVNIVSGALN 362
D RG+ RVHQF KVEQ+VLT + S + E+++N+EE L + YR+V + +G +
Sbjct: 265 DVRGLMRVHQFHKVEQYVLTEASLEASDRAFQELLENAEEILRLLELPYRLVEVATGDMG 324
Query: 363 HAAAKKLDLEAWFPGSGAFRELVSCSNCLAYQSRRLLVRYGQTKKMNEKIEFVHMLNATA 422
+++D+E + P G +RE SCS L +Q+RR +RY + ++ + + LN TA
Sbjct: 325 PGKWRQVDIEVYLPSEGRYRETHSCSALLDWQARRANLRY---RDPEGRVRYAYTLNNTA 381
Query: 423 CATTRVICAILETHQTETG-VRIPDCLRKFV 452
AT R++ +LE HQ + G VR+P L ++
Sbjct: 382 LATPRILAMLLENHQLQDGRVRVPQALIPYM 412
Score = 59.1 bits (144), Expect = 4e-09
Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Query: 531 KDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQECDAG 579
D YL T+E + A+H LP +LP+RY G + FR E AG
Sbjct: 214 AIAETDLYLTGTAEVVLNALHSGEILPYEALPLRYAGYAPAFRSE--AG 260
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic
dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP;
2.27A {Mus musculus}
Length = 536
Score = 238 bits (609), Expect = 2e-68
Identities = 75/199 (37%), Positives = 114/199 (57%), Gaps = 7/199 (3%)
Query: 15 KDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVH 74
D YL T+E + A+H LP +LP+RY G + FR E GS G+D RG+ RVH
Sbjct: 323 AIAETDLYLTGTAEVVLNALHSGEILPYEALPLRYAGYAPAFRSEAGSFGKDVRGLMRVH 382
Query: 75 QFEKVEQFVLTSPHDDESWKMLDEMIQNSEEFYADLGIAYRVVNIVSGALNHAAAKKLDL 134
QF KVEQ+VLT + S + E+++N+EE L + YR+V + +G + +++D+
Sbjct: 383 QFHKVEQYVLTEASLEASDRAFQELLENAEEILRLLELPYRLVEVATGDMGPGKWRQVDI 442
Query: 135 EAWFPGSGAFRELVSCSNCLDYQSRRLLVRY--GQTKQKIYAT----ACATTRVICAILE 188
E + P G +RE SCS LD+Q+RR +RY + + + T A AT R++ +LE
Sbjct: 443 EVYLPSEGRYRETHSCSALLDWQARRANLRYRDPEGRVRYAYTLNNTALATPRILAMLLE 502
Query: 189 THQTETG-VRIPDCLRKFV 206
HQ + G VR+P L ++
Sbjct: 503 NHQLQDGRVRVPQALIPYM 521
Score = 189 bits (482), Expect = 2e-51
Identities = 56/151 (37%), Positives = 90/151 (59%), Gaps = 4/151 (2%)
Query: 303 DTRGIFRVHQFEKVEQFVLTSPHDDESWKTLDEMIQNSEEFYADLGIAYRVVNIVSGALN 362
D RG+ RVHQF KVEQ+VLT + S + E+++N+EE L + YR+V + +G +
Sbjct: 374 DVRGLMRVHQFHKVEQYVLTEASLEASDRAFQELLENAEEILRLLELPYRLVEVATGDMG 433
Query: 363 HAAAKKLDLEAWFPGSGAFRELVSCSNCLAYQSRRLLVRYGQTKKMNEKIEFVHMLNATA 422
+++D+E + P G +RE SCS L +Q+RR +RY + ++ + + LN TA
Sbjct: 434 PGKWRQVDIEVYLPSEGRYRETHSCSALLDWQARRANLRY---RDPEGRVRYAYTLNNTA 490
Query: 423 CATTRVICAILETHQTETG-VRIPDCLRKFV 452
AT R++ +LE HQ + G VR+P L ++
Sbjct: 491 LATPRILAMLLENHQLQDGRVRVPQALIPYM 521
Score = 58.9 bits (143), Expect = 6e-09
Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Query: 531 KDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQECDAG 579
D YL T+E + A+H LP +LP+RY G + FR E AG
Sbjct: 323 AIAETDLYLTGTAEVVLNALHSGEILPYEALPLRYAGYAPAFRSE--AG 369
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics,
NPPSFA, nationa on protein structural and functional
analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Length = 425
Score = 203 bits (520), Expect = 2e-57
Identities = 79/199 (39%), Positives = 122/199 (61%), Gaps = 10/199 (5%)
Query: 15 KDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVH 74
K E D+ YLI T+E P+ ++R+ L E +LPI + C+R+E G++G+D RGI R H
Sbjct: 220 KCERDNLYLIPTAEVPLTNLYREEILKEENLPIYLTAYTPCYRREAGAYGKDIRGIIRQH 279
Query: 75 QFEKVEQFVLTSPHDDESWKMLDEMIQNSEEFYADLGIAYRVVNIVSGALNHAAAKKLDL 134
QF+KVE + P D S+ L+++++++EE LG+ YRVV + +G L +AAK D+
Sbjct: 280 QFDKVELVKIVHP--DTSYDELEKLVKDAEEVLQLLGLPYRVVELCTGDLGFSAAKTYDI 337
Query: 135 EAWFPGSGAFRELVSCSNCLDYQSRRLLVRY--GQTKQKIYA-----TACATTRVICAIL 187
E WFP +RE+ SCSNC D+Q+RR+ R+ +T + + + A R + AIL
Sbjct: 338 EVWFPSQNKYREISSCSNCEDFQARRMNTRFKDSKTGKNRFVHTLNGSGLAVGRTLAAIL 397
Query: 188 ETHQTETG-VRIPDCLRKF 205
E +Q E G V +P+ LR +
Sbjct: 398 ENYQQEDGSVVVPEVLRDY 416
Score = 160 bits (408), Expect = 1e-42
Identities = 64/150 (42%), Positives = 92/150 (61%), Gaps = 5/150 (3%)
Query: 303 DTRGIFRVHQFEKVEQFVLTSPHDDESWKTLDEMIQNSEEFYADLGIAYRVVNIVSGALN 362
D RGI R HQF+KVE + P D S+ L+++++++EE LG+ YRVV + +G L
Sbjct: 271 DIRGIIRQHQFDKVELVKIVHP--DTSYDELEKLVKDAEEVLQLLGLPYRVVELCTGDLG 328
Query: 363 HAAAKKLDLEAWFPGSGAFRELVSCSNCLAYQSRRLLVRYGQTKKMNEKIEFVHMLNATA 422
+AAK D+E WFP +RE+ SCSNC +Q+RR+ R+ +K K FVH LN +
Sbjct: 329 FSAAKTYDIEVWFPSQNKYREISSCSNCEDFQARRMNTRFKDSK--TGKNRFVHTLNGSG 386
Query: 423 CATTRVICAILETHQTETG-VRIPDCLRKF 451
A R + AILE +Q E G V +P+ LR +
Sbjct: 387 LAVGRTLAAILENYQQEDGSVVVPEVLRDY 416
Score = 53.7 bits (130), Expect = 2e-07
Identities = 20/49 (40%), Positives = 30/49 (61%), Gaps = 2/49 (4%)
Query: 531 KDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQECDAG 579
K E D+ YLI T+E P+ ++R+ L E +LPI + C+R+E AG
Sbjct: 220 KCERDNLYLIPTAEVPLTNLYREEILKEENLPIYLTAYTPCYRRE--AG 266
>3mf2_A BLL0957 protein; aminoacyl-tRNA synthetase, seryl-tRNA synthetase,
zinc ION, amino acid:[carrier protein] ligase; HET: AMP;
2.15A {Bradyrhizobium japonicum} PDB: 3mey_A* 3mf1_A*
3pzc_A*
Length = 346
Score = 162 bits (412), Expect = 4e-44
Identities = 32/214 (14%), Positives = 65/214 (30%), Gaps = 27/214 (12%)
Query: 7 KVGDSAPEKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRD 66
G D L + P+ + +R+ + CFR+E
Sbjct: 130 DAGGDWTTSLSPADLVLSPAACYPVYPIAASRGPLPK-GGLRFDVAADCFRREPS----- 183
Query: 67 TRGIFRVHQFEKVEQFVLTSPHDDESWKMLDEMIQNSEEFYADLGIAYRVVN-------- 118
+ + R+ F E + +P D+ + + ++ DLG+ +RV
Sbjct: 184 -KHLDRLQSFRMREYVCIGTP--DDVSDFRERWMVRAQAIARDLGLTFRVDYASDPFFGR 240
Query: 119 --IVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQSRRLLVRYGQTKQKIYA-T 175
+ K +L +S + ++ ++ + A T
Sbjct: 241 VGQMKAVSQKQQQLKFELLIPLRSEEQPTACMSFNYHREHFGTTWGIQDANGE---PAHT 297
Query: 176 AC---ATTRVICAILETHQTETGVRIPDCLRKFV 206
C R+ A+ TH T+ P +R +
Sbjct: 298 GCVAFGMDRLAVAMFHTHGTDLS-AWPAKVRDIL 330
Score = 133 bits (335), Expect = 6e-34
Identities = 23/159 (14%), Positives = 48/159 (30%), Gaps = 21/159 (13%)
Query: 304 TRGIFRVHQFEKVEQFVLTSPHDDESWKTLDEMIQNSEEFYADLGIAYRVVN-------- 355
++ + R+ F E + +P D+ + + ++ DLG+ +RV
Sbjct: 183 SKHLDRLQSFRMREYVCIGTP--DDVSDFRERWMVRAQAIARDLGLTFRVDYASDPFFGR 240
Query: 356 --IVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLAYQSRRLLVRYGQTKKMNEKIE 413
+ K +L +S + + ++ E
Sbjct: 241 VGQMKAVSQKQQQLKFELLIPLRSEEQPTACMSFNYHREHFGTTWGIQDANG-------E 293
Query: 414 FVHMLNATACATTRVICAILETHQTETGVRIPDCLRKFV 452
H A R+ A+ TH T+ P +R +
Sbjct: 294 PAHT-GCVAFGMDRLAVAMFHTHGTDLS-AWPAKVRDIL 330
Score = 40.4 bits (94), Expect = 0.003
Identities = 10/79 (12%), Positives = 23/79 (29%), Gaps = 2/79 (2%)
Query: 504 IATEKERNNALREVIGKGEKVGDSAPEKDELDDKYLIATSEQPICAVHRDSWLPEASLPI 563
+ + + + + G D L + P+ + +
Sbjct: 112 VCGLHGTEREINAAVSRFDA-GGDWTTSLSPADLVLSPAACYPVYPIAASRGPLPK-GGL 169
Query: 564 RYLGVSTCFRQECDAGMCR 582
R+ + CFR+E + R
Sbjct: 170 RFDVAADCFRREPSKHLDR 188
>2cja_A Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE ATP; 2.2A
{Methanosarcina barkeri} PDB: 2cim_A* 2cj9_A* 2cjb_A
Length = 522
Score = 148 bits (374), Expect = 1e-37
Identities = 41/221 (18%), Positives = 68/221 (30%), Gaps = 26/221 (11%)
Query: 4 KGEKVGDSAPEKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVS-TCFRQEVGS 62
E EK + P LP +P++ S T R E G
Sbjct: 302 THEVPTKLIKEKIAEPIGGMCYAQCPPFWMYVAGETLPNEEIPVKVFDRSGTSHRYESGG 361
Query: 63 HGRDTRGIFRVHQFEKVEQFVLTSPHDDESWKMLDEMIQNSEEFYAD-LGIAYRVVNI-- 119
GI RV +F ++E + + +E K +E+ + D L I +R +
Sbjct: 362 I----HGIERVDEFHRIEIVWIGTK--EEVLKCAEELHDRYMHIFNDILDIEWRKARVTP 415
Query: 120 -------VSGALNHAAAKKLDLEAWFP---GSGAFRELVSCSNCLDYQSRRLLVRYGQTK 169
+ G D EA P G + E + S D + V+ +
Sbjct: 416 WFMAQEGLLGLAEENTVGTTDYEACLPYRGPDGEWLEFQNVSINGDKYPKGFNVKLQ-SG 474
Query: 170 QKIYATAC---ATTRVICAILETHQTETGVRIPDCLRKFVP 207
+++ + C R L + P+ R V
Sbjct: 475 DELW-SGCSGVGLERWAAVFLAQKGLDPA-NWPEEFRNRVG 513
Score = 109 bits (272), Expect = 9e-25
Identities = 27/162 (16%), Positives = 49/162 (30%), Gaps = 24/162 (14%)
Query: 305 RGIFRVHQFEKVEQFVLTSPHDDESWKTLDEMIQNSEEFYAD-LGIAYRVVNI------- 356
GI RV +F ++E + + +E K +E+ + D L I +R +
Sbjct: 363 HGIERVDEFHRIEIVWIGTK--EEVLKCAEELHDRYMHIFNDILDIEWRKARVTPWFMAQ 420
Query: 357 --VSGALNHAAAKKLDLEAWFP---GSGAFRELVSCSNCLAYQSRRLLVRYGQTKKMNEK 411
+ G D EA P G + E + S + V+ +
Sbjct: 421 EGLLGLAEENTVGTTDYEACLPYRGPDGEWLEFQNVSINGDKYPKGFNVKL-------QS 473
Query: 412 IEFVHMLNATACATTRVICAILETHQTETGVRIPDCLRKFVP 453
+ + + R L + P+ R V
Sbjct: 474 GDELW-SGCSGVGLERWAAVFLAQKGLDPA-NWPEEFRNRVG 513
Score = 47.4 bits (112), Expect = 2e-05
Identities = 25/182 (13%), Positives = 43/182 (23%), Gaps = 38/182 (20%)
Query: 520 KGEKVGDSAPEKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVS-TCFRQECDA 578
E EK + P LP +P++ S T R E
Sbjct: 302 THEVPTKLIKEKIAEPIGGMCYAQCPPFWMYVAGETLPNEEIPVKVFDRSGTSHRYESGG 361
Query: 579 --GMCRTY------FHVTC------AQREGLLSEATSE---------EVDQADPFYAHCR 615
G+ R E L + P++
Sbjct: 362 IHGIERVDEFHRIEIVWIGTKEEVLKCAEELHDRYMHIFNDILDIEWRKARVTPWFMAQ- 420
Query: 616 LHADKLEDFSKFSKILVC--CVCLGERSDDVNEIVECDSCGVTVHEVKIQQEFLAIKFLI 673
+ L ++ + + CL R D E +E + I + F +
Sbjct: 421 ---EGLLGLAEENTVGTTDYEACLPYRGPD-GEWLEFQNV-------SINGDKYPKGFNV 469
Query: 674 RY 675
+
Sbjct: 470 KL 471
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from
bromodomain-containing protein...; PHD finger, histone
CODE, transcription; NMR {Homo sapiens}
Length = 88
Score = 70.4 bits (172), Expect = 6e-15
Identities = 21/70 (30%), Positives = 28/70 (40%), Gaps = 10/70 (14%)
Query: 693 VCCVCLGERSDDVNEIVECDSCGVTVHEGCYGVQDTASISSTVSSCSTEPWFCESCRAGI 752
VC +C+ S + N I+ CD C + VH+ CYGV W C C
Sbjct: 27 VCSICMDGESQNSNVILFCDMCNLAVHQECYGVP----------YIPEGQWLCRHCLQSR 76
Query: 753 AEPTCELCPN 762
A P E +
Sbjct: 77 ARPALEHHHH 86
Score = 42.7 bits (100), Expect = 3e-05
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 632 VCCVCLGERSDDVNEIVECDSCGVTVH 658
VC +C+ S + N I+ CD C + VH
Sbjct: 27 VCSICMDGESQNSNVILFCDMCNLAVH 53
Score = 30.4 bits (68), Expect = 0.64
Identities = 9/33 (27%), Positives = 14/33 (42%), Gaps = 2/33 (6%)
Query: 1040 CGLCHLSHDPHT--MAKCDTCHLYYHLACLDPP 1070
C +C ++ + CD C+L H C P
Sbjct: 28 CSICMDGESQNSNVILFCDMCNLAVHQECYGVP 60
>2yt5_A Metal-response element-binding transcription factor 2;
zinc-regulated factor 1, ZIRF1, metal-response element
DNA-binding protein M96; NMR {Mus musculus}
Length = 66
Score = 59.9 bits (145), Expect = 1e-11
Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 5/62 (8%)
Query: 692 LVCCVCLGERSDDVNEIVECDSCGVTVHEGCYGVQDTASISSTVSSCSTEPWFCESCRAG 751
VC +C E S+ NE+V CD CG H+ C+ +S+ S E W C C
Sbjct: 7 GVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSV-----IDSDEKWLCRQCVFA 61
Query: 752 IA 753
Sbjct: 62 TT 63
Score = 42.9 bits (101), Expect = 1e-05
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 631 LVCCVCLGERSDDVNEIVECDSCGVTVH 658
VC +C E S+ NE+V CD CG H
Sbjct: 7 GVCTICQEEYSEAPNEMVICDKCGQGYH 34
Score = 36.4 bits (84), Expect = 0.002
Identities = 11/35 (31%), Positives = 15/35 (42%), Gaps = 2/35 (5%)
Query: 1039 KCGLCHLSH--DPHTMAKCDTCHLYYHLACLDPPL 1071
C +C + P+ M CD C YH C P +
Sbjct: 8 VCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHI 42
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator,
metal-binding, finger, signaling protein; NMR {Homo
sapiens}
Length = 71
Score = 58.4 bits (141), Expect = 6e-11
Identities = 20/63 (31%), Positives = 26/63 (41%), Gaps = 10/63 (15%)
Query: 693 VCCVCLGERSDDVNEIVECDSCGVTVHEGCYGVQDTASISSTVSSCSTEPWFCESCRAGI 752
VC +C+ S + N I+ CD C + VH+ CYGV W C C
Sbjct: 18 VCSICMDGESQNSNVILFCDMCNLAVHQECYGVP----------YIPEGQWLCRHCLQSR 67
Query: 753 AEP 755
A P
Sbjct: 68 ARP 70
Score = 41.4 bits (97), Expect = 5e-05
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 632 VCCVCLGERSDDVNEIVECDSCGVTVH 658
VC +C+ S + N I+ CD C + VH
Sbjct: 18 VCSICMDGESQNSNVILFCDMCNLAVH 44
Score = 31.0 bits (70), Expect = 0.28
Identities = 9/33 (27%), Positives = 14/33 (42%), Gaps = 2/33 (6%)
Query: 1040 CGLCHLSHDPHT--MAKCDTCHLYYHLACLDPP 1070
C +C ++ + CD C+L H C P
Sbjct: 19 CSICMDGESQNSNVILFCDMCNLAVHQECYGVP 51
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 64.3 bits (156), Expect = 2e-10
Identities = 88/620 (14%), Positives = 174/620 (28%), Gaps = 237/620 (38%)
Query: 23 LIATSEQPICAVHRD---SWLPEAS--------------LPIRYLG-VSTCFRQ-EVGSH 63
L+ T+ I + ++ LPE + L ++LG VS+ +VG
Sbjct: 21 LVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQF 80
Query: 64 GRDTRGIFRVHQFEK-------VEQFVLTSPHDDESWKM-LDEMIQNSEEFYADLGIAYR 115
+ +FE + ++++ + E+I+N + +A R
Sbjct: 81 DQVLNLCLT--EFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKN---YITARIMAKR 135
Query: 116 VVNIVSG-AL-NHAAAKKLDLEAWFPGSGA----FRELVS--------CSNCLDYQSRRL 161
+ S AL L A F G G F EL + + + + L
Sbjct: 136 PFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETL 195
Query: 162 --LVRYGQTKQKIY----------------------ATA-----------CATTRVICAI 186
L+R +K++ + A V +
Sbjct: 196 SELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKL 255
Query: 187 LETHQTE--------TGVRIPDCLRKFVPAVYLNEAGEIP-FVKTAPIDEEETKKQKKQK 237
L E TG + V AV + E F +
Sbjct: 256 LGFTPGELRSYLKGATG-----HSQGLVTAVAIAETDSWESFFVSV-------------- 296
Query: 238 EGMKKKLTMSLFSQVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESWKMLDEMIQNSEE 297
+K +T+ LF +G R ++ P+ +L++ ++N+E
Sbjct: 297 ---RKAITV-LF-FIG---------VRCYE---------AYPNTSLPPSILEDSLENNEG 333
Query: 298 F--YADLDTRGIFRVHQFEKVEQFVLTSPHDDESWKTLDEMIQNSEEFYADLGIAYRVVN 355
L + + + V + P + I+ +VN
Sbjct: 334 VPSPM-LSISNLTQEQVQDYVNKTNSHLPAGK------------------QVEIS--LVN 372
Query: 356 -----IVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLAYQSRRLLVRYGQTKKMNE 410
+VSG L + R+ + S QSR + + +
Sbjct: 373 GAKNLVVSG---PPQ----SLYGL---NLTLRKAKAPSGLD--QSR---IPFSE-----R 412
Query: 411 KIEFV----------H---MLNATACATTRVICAILETHQTETGVRIPDCLRKFVPAVYV 457
K++F H ++ A+ ++ + + + ++IP VY
Sbjct: 413 KLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKD--IQIP---------VYD 461
Query: 458 NEAGE-------------IPFVKTAPID-EEETKKQ-------------------KKQKE 484
G + + P+ E T+ + + K+
Sbjct: 462 TFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKD 521
Query: 485 GMKKKVLIDEAMIQNEKDLI 504
G +V++ + N D
Sbjct: 522 GTGVRVIVAGTLDINPDDDY 541
Score = 45.4 bits (107), Expect = 1e-04
Identities = 51/309 (16%), Positives = 88/309 (28%), Gaps = 91/309 (29%)
Query: 178 ATTRVICAILETHQTETGVRIPDCLRKFVPAVYLNEAGEIPFVKTAPIDEEETKKQKKQK 237
+TR + L E + +P F A L E F K P E +
Sbjct: 4 YSTRPL--TLSHGSLEHVLLVPTAS--FFIASQLQEQ----FNKILPEPTEGFAADDEPT 55
Query: 238 EGMKKKLTMSLFSQVGSHGRDTRGIFRVHQFEKVEQFV--LTSPHDDESWKMLDEMIQNS 295
+ E V +F+ ++S + D+++
Sbjct: 56 ------------TPA----------------ELVGKFLGYVSSLVEPSKVGQFDQVLNLC 87
Query: 296 -EEFYADLDTRGIFR---VHQFEKVEQFVLTSPHDDES-WKTLDEMIQNSEEFYADLGIA 350
EF +H ++++ E+I+N + +A
Sbjct: 88 LTEF-----ENCYLEGNDIHAL------AAKLLQENDTTLVKTKELIKN---YITARIMA 133
Query: 351 YRVVNIVSG-AL-NHAAAKKLDLEAWFPGSGA----FRELVSCSNCLAYQSRRLLVRYGQ 404
R + S AL L A F G G F EL L YQ+ +LV
Sbjct: 134 KRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRD----L-YQTYHVLVG--- 185
Query: 405 TKKMNEKIEFVHMLNAT--ACATTRVICAILETHQTETGVRIPDCLRKFVPAVYVNEAGE 462
+ + T T + + T G+ I + L P + +
Sbjct: 186 --------DLIKFSAETLSELIRTTLDAEKVFTQ----GLNILEWLEN--P----SNTPD 227
Query: 463 IPFVKTAPI 471
++ + PI
Sbjct: 228 KDYLLSIPI 236
Score = 45.0 bits (106), Expect = 1e-04
Identities = 95/695 (13%), Positives = 176/695 (25%), Gaps = 294/695 (42%)
Query: 418 LNATACATTRVICAILETHQTETGVRIPDCLRKFVPAVYVNEAGEIPFVKTAPIDEEETK 477
++A +TR + L E + +P F A + E F K P E
Sbjct: 1 MDA---YSTRPL--TLSHGSLEHVLLVPTAS--FFIASQLQEQ----FNKILPEPTEGFA 49
Query: 478 KQKKQKEGMKKKVLIDEAMIQNEKDL-------IATEKERNNA------LREVIG----- 519
DE E L +++ E + L +
Sbjct: 50 AD-------------DEPTTPAE--LVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENC 94
Query: 520 --KGEKV------GDSAPEKDELDDKYLI-------ATSEQPICAVHRDSWL-----PEA 559
+G + + + K LI +++P + A
Sbjct: 95 YLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNA 154
Query: 560 SLPIRYL-----GVS-TCFR--QECDAGMCRTY------FHVTCAQREGLLSEATSEEVD 605
L G + F ++ + +TY A+ LSE +D
Sbjct: 155 QL---VAIFGGQGNTDDYFEELRD----LYQTYHVLVGDLIKFSAE---TLSELIRTTLD 204
Query: 606 QADPFYAH-CRL-----HADKLED--------FS-------KFSKILVCCVCLGERSDDV 644
A+ + + + D S + + +V LG ++
Sbjct: 205 -AEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGEL 263
Query: 645 NEIVECDSCGVTVHEVKIQ-----------QEFL--AIKFLIRYLLFWFQLEDFSKFSKI 691
+ G T H + + F K + +LF+
Sbjct: 264 RSYL----KGATGHSQGLVTAVAIAETDSWESFFVSVRKAI--TVLFF------------ 305
Query: 692 LVCCVCLGERSDDVNEIVECDSCGVTVHEGCYGVQDTASISSTVSSCSTEPWFCESCRAG 751
+G R +E Y S+ ++ +S
Sbjct: 306 ------IGVRC----------------YE-AYPNT---SLPPSILE--------DSLENN 331
Query: 752 IAEPTCELCPNFGENHLRGL-----FENIK--NGHAQRDRMRYHACHLRDSRDSSDGDRG 804
P+ L + L + + N H + + L +
Sbjct: 332 EGVPSPMLS-------ISNLTQEQVQDYVNKTNSHLPAGKQVEIS--LVNGAK------- 375
Query: 805 GIFKETDVGKWVHLVCA-----LYIPGVAFGEVDRLSNVTLFEMPYSRWGAKSCALCPDE 859
+LV + LY G+ N+TL R K+ A
Sbjct: 376 ------------NLVVSGPPQSLY--GL---------NLTL------R---KAKA-PSGL 402
Query: 860 SYARTELALQSP-------PVNCVP--TLLVYMEVVFPQPPQRKLGKYKVKYVDMKSLRN 910
+R + + PV P + + + L K V + + K ++
Sbjct: 403 DQSRIPFSERKLKFSNRFLPVA-SPFHSH--LLVPASDLINKD-LVKNNVSF-NAKDIQI 457
Query: 911 PPWV-PT------QKLARPLTSSATLCRALLHKARLMEVDTGAVAQAQSDLATLADMNKK 963
P V T + L+ ++ + ++ V Q + AT
Sbjct: 458 P--VYDTFDGSDLRVLSGSISER--IVDCIIRLP----VKWETTTQFK---AT------- 499
Query: 964 WHIPLAFNVEFVAYFLNRNG-----RLGKLTREQR 993
HI ++F G LG LT +
Sbjct: 500 -HI-----LDF--------GPGGASGLGVLTHRNK 520
Score = 42.3 bits (99), Expect = 0.001
Identities = 53/314 (16%), Positives = 94/314 (29%), Gaps = 96/314 (30%)
Query: 233 QKKQKEGMKKKLTMSLFSQVGSHGRDTRGIFRVHQ--FEKVEQFVLTSPHDDESWKMLDE 290
Q Q++GM G D + Q + + + D + +LD
Sbjct: 1624 QGSQEQGM---------------GMDLYKTSKAAQDVWNRADNHFK----DTYGFSILDI 1664
Query: 291 MIQNSEEFYADLDTRGIFRVHQFEKVEQFVLTSPHDDESW-----KTLDEMIQNSEEFYA 345
+I N R+ E + + D + K ++E S F +
Sbjct: 1665 VINNPVNLTIHFGGEKGKRIR--ENYSAMIFETIVDGKLKTEKIFKEINEHS-TSYTFRS 1721
Query: 346 DLGIAYRVVN----IVSGALNHAAAKKLDLEAW--FPGSGAFR-----E---LVSCSNCL 391
+ G+ + + AA + DL++ P F E L S ++ +
Sbjct: 1722 EKGLLSATQFTQPALT--LMEKAAFE--DLKSKGLIPADATFAGHSLGEYAALASLADVM 1777
Query: 392 AYQSRRLLVRY-GQT-KKMNEKIEFVH----MLNATACATTRV--------ICAILETHQ 437
+ +S +V Y G T + + E M+ A RV + ++E
Sbjct: 1778 SIESLVEVVFYRGMTMQVAVPRDELGRSNYGMI---AINPGRVAASFSQEALQYVVERVG 1834
Query: 438 TETGVRIPDCLRKFVPAV--------YVNEAGEIPFVKTAPIDEEETKKQKKQK------ 483
TG V V YV AG++ + T K QK
Sbjct: 1835 KRTG--------WLVEIVNYNVENQQYV-AAGDLRALDTV---TNVLNFIKLQKIDIIEL 1882
Query: 484 ------EGMKKKVL 491
E ++ +
Sbjct: 1883 QKSLSLEEVEGHLF 1896
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken
structural genomics/proteomics initiative, RSGI, gene
regulation; NMR {Mus musculus} SCOP: g.50.1.2
Length = 88
Score = 53.5 bits (128), Expect = 4e-09
Identities = 15/58 (25%), Positives = 23/58 (39%), Gaps = 4/58 (6%)
Query: 692 LVCCVCLGERSDDVNEIVECDSCGVTVHEGCYGVQDTASISSTVSSCSTEPWFCESCR 749
L C VC N++VEC C H+ C+ Q ++ + W+C C
Sbjct: 17 LACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQ----VTDKEVNDPRLVWYCARCT 70
Score = 40.8 bits (95), Expect = 1e-04
Identities = 10/28 (35%), Positives = 12/28 (42%)
Query: 631 LVCCVCLGERSDDVNEIVECDSCGVTVH 658
L C VC N++VEC C H
Sbjct: 17 LACVVCRQMTVASGNQLVECQECHNLYH 44
Score = 40.1 bits (93), Expect = 3e-04
Identities = 10/46 (21%), Positives = 15/46 (32%), Gaps = 2/46 (4%)
Query: 1040 CGLCHLSHDPHT--MAKCDTCHLYYHLACLDPPLLRMPKKTKLMGW 1083
C +C + +C CH YH C P + + W
Sbjct: 19 CVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVW 64
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation,
UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo
sapiens}
Length = 77
Score = 51.0 bits (122), Expect = 3e-08
Identities = 16/45 (35%), Positives = 21/45 (46%)
Query: 1033 WGVLSHKCGLCHLSHDPHTMAKCDTCHLYYHLACLDPPLLRMPKK 1077
C LC DP CD C + +H+ CLDPPL +P +
Sbjct: 22 RLCRVCACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSE 66
Score = 28.7 bits (64), Expect = 2.3
Identities = 16/69 (23%), Positives = 30/69 (43%), Gaps = 11/69 (15%)
Query: 683 EDFSKFSKILVCCVCLGERSDDVNEIVECDSCGVTVHEGCYGVQDTASISSTVSSCSTE- 741
+D ++ ++ C +C D ++ + CD C + H C + +SS +E
Sbjct: 18 DDVNRLCRVCACHLC--GGRQDPDKQLMCDECDMAFHIYC--------LDPPLSSVPSED 67
Query: 742 PWFCESCRA 750
W+C CR
Sbjct: 68 EWYCPECRN 76
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP:
g.50.1.2
Length = 51
Score = 49.6 bits (119), Expect = 3e-08
Identities = 12/38 (31%), Positives = 19/38 (50%)
Query: 1039 KCGLCHLSHDPHTMAKCDTCHLYYHLACLDPPLLRMPK 1076
+C +C + + CD C+ +HL CL P L +P
Sbjct: 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPD 39
Score = 29.2 bits (66), Expect = 0.66
Identities = 11/58 (18%), Positives = 21/58 (36%), Gaps = 10/58 (17%)
Query: 694 CCVCLGERSDDVNEIVECDSCGVTVHEGCYGVQDTASISSTVSSCSTEPWFCESCRAG 751
C VC + + ++++ CD C H C + + W C +C+
Sbjct: 3 CKVC--RKKGEDDKLILCDECNKAFHLFC--------LRPALYEVPDGEWQCPACQPA 50
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic
regulation, LI binding protein complex; 1.41A {Homo
sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A*
2lgl_A 3t6r_A 3zvz_B
Length = 70
Score = 50.6 bits (121), Expect = 3e-08
Identities = 16/45 (35%), Positives = 21/45 (46%)
Query: 1033 WGVLSHKCGLCHLSHDPHTMAKCDTCHLYYHLACLDPPLLRMPKK 1077
C LC DP CD C + +H+ CLDPPL +P +
Sbjct: 14 RLCRVCACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSE 58
Score = 27.9 bits (62), Expect = 3.0
Identities = 16/69 (23%), Positives = 30/69 (43%), Gaps = 11/69 (15%)
Query: 683 EDFSKFSKILVCCVCLGERSDDVNEIVECDSCGVTVHEGCYGVQDTASISSTVSSCSTE- 741
+D ++ ++ C +C D ++ + CD C + H C + +SS +E
Sbjct: 10 DDVNRLCRVCACHLC--GGRQDPDKQLMCDECDMAFHIYC--------LDPPLSSVPSED 59
Query: 742 PWFCESCRA 750
W+C CR
Sbjct: 60 EWYCPECRN 68
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 77
Score = 50.2 bits (120), Expect = 6e-08
Identities = 16/44 (36%), Positives = 26/44 (59%)
Query: 1033 WGVLSHKCGLCHLSHDPHTMAKCDTCHLYYHLACLDPPLLRMPK 1076
S C +C H+P+ CD C++ YH+ CL+PPL ++P+
Sbjct: 22 KKCHSCSCRVCGGKHEPNMQLLCDECNVAYHIYCLNPPLDKVPE 65
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic
regulation, trimethylaion of lysine residue, ligase-DNA
binding protein; HET: M3L; 2.90A {Homo sapiens}
Length = 226
Score = 53.2 bits (127), Expect = 8e-08
Identities = 16/45 (35%), Positives = 21/45 (46%)
Query: 1033 WGVLSHKCGLCHLSHDPHTMAKCDTCHLYYHLACLDPPLLRMPKK 1077
C LC DP CD C + +H+ CLDPPL +P +
Sbjct: 170 RLCRVCACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSE 214
Score = 30.1 bits (67), Expect = 3.6
Identities = 16/69 (23%), Positives = 30/69 (43%), Gaps = 11/69 (15%)
Query: 683 EDFSKFSKILVCCVCLGERSDDVNEIVECDSCGVTVHEGCYGVQDTASISSTVSSCSTE- 741
+D ++ ++ C +C D ++ + CD C + H C + +SS +E
Sbjct: 166 DDVNRLCRVCACHLC--GGRQDPDKQLMCDECDMAFHIYC--------LDPPLSSVPSED 215
Query: 742 PWFCESCRA 750
W+C CR
Sbjct: 216 EWYCPECRN 224
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 92
Score = 48.8 bits (116), Expect = 2e-07
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 1040 CGLCHLSHDPHTMAKCDTCHLYYHLACLDPPLLRMPK 1076
C +C + + CD C YH+ CL PPL +P+
Sbjct: 19 CQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLPEIPR 55
Score = 31.4 bits (71), Expect = 0.27
Identities = 13/59 (22%), Positives = 21/59 (35%), Gaps = 10/59 (16%)
Query: 693 VCCVCLGERSDDVNEIVECDSCGVTVHEGCYGVQDTASISSTVSSCSTEPWFCESCRAG 751
+C VC R D+ ++++ CD C H C + + W C C
Sbjct: 18 ICQVC--SRGDEDDKLLFCDGCDDNYHIFC--------LLPPLPEIPRGIWRCPKCILA 66
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation,
nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens}
PDB: 2kwk_A 2kwn_A* 2kwo_A*
Length = 114
Score = 49.3 bits (117), Expect = 3e-07
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 1040 CGLCHLSHDPHTMAKCDTCHLYYHLACLDPPLLRMPK 1076
C LC S + + CD C YH+ CL+PP+ P+
Sbjct: 61 CILCGTSENDDQLLFCDDCDRGYHMYCLNPPVAEPPE 97
Score = 42.0 bits (98), Expect = 9e-05
Identities = 27/124 (21%), Positives = 45/124 (36%), Gaps = 24/124 (19%)
Query: 632 VCCVCLG-----ERSDDVNEIVECDSCGVTVHEVKIQQEFLAIKFLIRYLLFWFQLEDFS 686
C CLG ++S E+V C CG + H +Q + + Y W +E
Sbjct: 3 YCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFTLNMTEAVKTYK--WQCIECK- 59
Query: 687 KFSKILVCCVCLGERSDDVNEIVECDSCGVTVHEGCYGVQDTASISSTVSSCSTEPWFCE 746
C +C S++ ++++ CD C H C ++ V+ W C
Sbjct: 60 ------SCILC--GTSENDDQLLFCDDCDRGYHMYC--------LNPPVAEPPEGSWSCH 103
Query: 747 SCRA 750
C
Sbjct: 104 LCWE 107
Score = 34.3 bits (78), Expect = 0.044
Identities = 20/81 (24%), Positives = 31/81 (38%), Gaps = 13/81 (16%)
Query: 693 VCCVCLG-----ERSDDVNEIVECDSCGVTVHEGCYGVQDTASISSTVSS---CSTEPWF 744
C CLG ++S E+V C CG + H C +Q T +++ V + E
Sbjct: 3 YCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTC--LQFTLNMTEAVKTYKWQCIECKS 60
Query: 745 CESCRAGIAEPT---CELCPN 762
C C + C+ C
Sbjct: 61 CILCGTSENDDQLLFCDDCDR 81
Score = 31.6 bits (71), Expect = 0.37
Identities = 10/45 (22%), Positives = 11/45 (24%), Gaps = 7/45 (15%)
Query: 1040 CGLCHL-------SHDPHTMAKCDTCHLYYHLACLDPPLLRMPKK 1077
C C S P + C C H CL L
Sbjct: 4 CDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFTLNMTEAV 48
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 52.9 bits (126), Expect = 5e-07
Identities = 66/519 (12%), Positives = 141/519 (27%), Gaps = 154/519 (29%)
Query: 289 DEMIQNSEEFYADLD-------TRGIFRVHQFEKVEQFVLTSPHDDES-----WKTLDEM 336
D + + F + D + I + + ++ S W L +
Sbjct: 20 DILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDH----IIMSKDAVSGTLRLFWTLLSKQ 75
Query: 337 IQNSEEFYAD-LGIAYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLAYQS 395
+ ++F + L I Y+ + + E P S R + + L Y
Sbjct: 76 EEMVQKFVEEVLRINYKFL-----------MSPIKTEQRQP-SMMTRMYIEQRDRL-YND 122
Query: 396 RRLLVRYGQT-KKMNEKIE------------FVH-M-------LNATACATTRVICAI-- 432
++ +Y + + K+ + + + C + +V C +
Sbjct: 123 NQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDF 182
Query: 433 ----LETHQTETGVRIPDCLRKFVPAVYVNEAGEIPFVKTAPIDEEETKKQKK--QKEGM 486
L + + + L+K + + N + + + + K
Sbjct: 183 KIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP 242
Query: 487 KKKVLI--DEAMIQNEKD----------LIATEKERNNAL---------REVIGKGEKVG 525
+ L+ +QN K L+ T R + + +
Sbjct: 243 YENCLLVLLN--VQNAKAWNAFNLSCKILLTT---RFKQVTDFLSAATTTHISLDHHSMT 297
Query: 526 DSAPEKDELDDKYL-IATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQECDAGMCR-- 582
+ E L KYL + LP L +S + G+
Sbjct: 298 LTPDEVKSLLLKYLDCRPQD-----------LPREVLTTNPRRLSI-IAESIRDGLATWD 345
Query: 583 TYFHVTCAQREGLLSEATSEEVDQADPFYAHCRLHADKLEDFSKFSKI---LVCCVCLGE 639
+ HV C + L+ ++ +P A R D+L F + I L+ +
Sbjct: 346 NWKHVNCDK----LTTIIESSLNVLEP--AEYRKMFDRLSVFPPSAHIPTILLSLIWFDV 399
Query: 640 RSDDVNEIV---------ECDSCG--VTVH----EVKIQQEFLA---IKFLIRYLL---- 677
DV +V E +++ E+K++ E + Y +
Sbjct: 400 IKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTF 459
Query: 678 --------------FWF---------QLEDFSKFSKILV 693
+ E + F + +
Sbjct: 460 DSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFL 498
Score = 48.7 bits (115), Expect = 1e-05
Identities = 105/655 (16%), Positives = 199/655 (30%), Gaps = 190/655 (29%)
Query: 444 IPDCLRKFVPAVYVNEAGEIPFVKTAPIDEEETKK-----QKKQKEGMKKKVLIDEAMIQ 498
+ D + ++ E EI + + T + KQ+E ++K ++E +
Sbjct: 38 VQDMPK----SILSKE--EIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQK--FVEEVLRI 89
Query: 499 NEKDL---IATE-KERNNALREVIGKGEKVGDSAPEKDELDDKYLIATSEQPICAVHRDS 554
N K L I TE ++ + R I + +++ + + KY + + QP + +
Sbjct: 90 NYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQ----VFAKYNV-SRLQPYLKLRQ-- 142
Query: 555 WLPEASLPIRYLGVSTCFRQECDAGM--CRTYFHVTCAQREG---LLSEA-TSEEVDQAD 608
L E P + + + G+ G + + S +V
Sbjct: 143 ALLELR-PAKNVLID---------GVLGS------------GKTWVALDVCLSYKVQCKM 180
Query: 609 PF------YAHCRLHADKLEDFSKFSKILVCCVCLGERSDDVNEIVECDSCGVTVHEVKI 662
F +C LE K + RSD H I
Sbjct: 181 DFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWT--SRSD---------------HSSNI 223
Query: 663 QQEFLAIKFLIRYLLFWFQLEDFSKFSKILVCCVCLGERSDDVN--EIVEC-D-SCGVTV 718
+ +I+ +R LL E+ C + L +V + + SC + +
Sbjct: 224 KLRIHSIQAELRRLLKSKPYEN---------CLLVL----LNVQNAKAWNAFNLSCKILL 270
Query: 719 HEGCYGVQDT---ASISSTVSSCSTEPWFCESCRAGIAEP-TCELCPNF---GENHLR-- 769
T ++ +S+ +T + + L + L
Sbjct: 271 ---------TTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPRE 321
Query: 770 ---------GLF-ENIKNGHAQRDRMRYHAC-HLRDSRDSS------DGDRG-----GIF 807
+ E+I++G A D ++ C L +SS R +F
Sbjct: 322 VLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVF 381
Query: 808 KETDVGKWVHLVCALYIPGVAFGEVDRLSNVTLFEMPYSRWGAKSCALCPD--ESYARTE 865
+IP LS + W + +
Sbjct: 382 PP-SA----------HIP------TILLSLI---------WFDVIKSDVMVVVNKLHKYS 415
Query: 866 LALQSPPVNCVPTLLVYMEVVFPQPPQRKL-----GKYKV-KYVDMKSLRNPPWVPT--- 916
L + P + + +Y+E+ + L Y + K D L PP++
Sbjct: 416 LVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDL-IPPYLDQYFY 474
Query: 917 QKLARPLTS-----SATLCRALLHKARLMEV----DTGAVAQAQSDLATLADMNK-KWHI 966
+ L + TL R + R +E D+ A + S L TL + K +I
Sbjct: 475 SHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYI 534
Query: 967 PLAFN-----VEFVAYFLNRNGR---LGKLTR-EQRALAVENDSLQSEQSR-LQK 1011
V + FL + K T + AL E++++ E + +Q+
Sbjct: 535 CDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQVQR 589
Score = 41.4 bits (96), Expect = 0.002
Identities = 90/669 (13%), Positives = 170/669 (25%), Gaps = 250/669 (37%)
Query: 459 EAGEIPFV--KTAPIDEEETKK--QKKQKEGMKKKVLIDEAMIQNEKDLIATEKERNNAL 514
E GE + + E+ K + M K +L E E D I K+ +
Sbjct: 10 ETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKE-----EIDHIIMSKDAVSGT 64
Query: 515 REVIG----KGEKVGDSAPEKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVST 570
+ K E++ E + L Y +L
Sbjct: 65 LRLFWTLLSKQEEMVQKFVE-EVLRINY---------------KFLMSP----------- 97
Query: 571 CFRQECDAGMCRTYFHVTCAQREGLLSEATSEEVDQADPFYAHCRLHADKLEDFSKFSKI 630
Q S T ++Q D Y D F+K
Sbjct: 98 --------------IKTEQRQP----SMMTRMYIEQRDRLY----------NDNQVFAKY 129
Query: 631 LVCCVCLGERSDDVNEIVEC-----DSCGVTVH------------EV----KIQQEFLAI 669
V R ++ + + V + +V K+Q +
Sbjct: 130 NVS------RLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKM--- 180
Query: 670 KFLIRYLLFWFQLEDFSKFSKILVCCVCLGERSDDVNEIVECDSCGVTVHEGCYGVQDTA 729
F I FW + L + ++E + + Y +
Sbjct: 181 DFKI----FW----------------LNLKNCNSP-ETVLE------MLQKLLYQI---- 209
Query: 730 SISSTVSSCSTEPWFCESCRAGIAEPTCELCPNFGENHLRGLFENIKNGHAQRDRMRYHA 789
+P + L + + LR L ++ Y
Sbjct: 210 -----------DPNWTSRSDHSSNIK---LRIHSIQAELRRLLKS----------KPYEN 245
Query: 790 CH--LRDSRDSSDGDRGGIFKETDVGKWVHLVCALYI----PGVAFGEVDRLSNVTLFEM 843
C L + +++ + ++ C + + V D LS T +
Sbjct: 246 CLLVLLNVQNAK------AWNAFNLS------CKILLTTRFKQVT----DFLSAATTTHI 289
Query: 844 PYSRWGAKSCALCPDESYARTELALQSPPVNCVPTLLVYMEVVFPQPPQRKLGKYKVKYV 903
S L PDE +L ++C P L P + + +
Sbjct: 290 SLDH---HSMTLTPDEV-----KSLLLKYLDCRPQDL---------PREVLTTNPRR--L 330
Query: 904 DM--KSLRNPP--W-----VPTQKLARPLTSS-----ATLCRALLHKARLMEVDTGAVAQ 949
+ +S+R+ W V KL + SS R + + +
Sbjct: 331 SIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTI 390
Query: 950 AQSDLATLADMNKKWHIPLAFNVEFVAYFLNRNGRLGKLTREQRALAVENDSLQSEQSRL 1009
L+ + W + +V V L++ + K +E S+ S L
Sbjct: 391 L---LSLI------WFDVIKSDVMVVVNKLHKYSLVEKQPKESTI------SIPSIYLEL 435
Query: 1010 QKTYDELVYMEVVFPQPPLSKQAWGVLSHKCGL----CHLSHDPHTMAK--CDT---CHL 1060
+ + + H+ + + D + D H+
Sbjct: 436 KVKLENEYAL------------------HRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHI 477
Query: 1061 YYHLACLDP 1069
+HL ++
Sbjct: 478 GHHLKNIEH 486
Score = 38.3 bits (88), Expect = 0.018
Identities = 70/564 (12%), Positives = 155/564 (27%), Gaps = 145/564 (25%)
Query: 69 GIFRVHQFEKVEQFVLTSPHDDESW---KMLDEMIQ---NSEEFYADLGIAYRVVNIVSG 122
Q E V++FV + + + E Q + + Y + +
Sbjct: 69 WTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFA- 127
Query: 123 ALNHAAAKK-LDLEAWFPGSGAFRELVSCSNCLDYQSRRLLVRYGQT---KQKIYATACA 178
N + + L L A EL + + ++ G K + C
Sbjct: 128 KYNVSRLQPYLKLRQ------ALLEL---------RPAKNVLIDGVLGSGKTWVALDVCL 172
Query: 179 TTRVICAI------LETHQTETGVRIPDCLRKFVPAVYLNEAGEIPFVKTAPIDEEETKK 232
+ +V C + L + + + L+K + + N + +
Sbjct: 173 SYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQA 232
Query: 233 QKKQKEGMKKKLTMSL--------------FSQVGSH----GRDTRGIFRVHQFEKVEQF 274
+ ++ K L F+ + R + +
Sbjct: 233 ELRRLL-KSKPYENCLLVLLNVQNAKAWNAFN-LSCKILLTTRF-KQVTDFLSAATTTHI 289
Query: 275 VLTSPHDDESWKMLDEMIQNSEEFYAD-LDTRGIFRVHQFEKV-EQFVLTSP-------- 324
L D L + LD R + + + + T+P
Sbjct: 290 SL-----DHHSMTLTP--DEVKSLLLKYLDCR-------PQDLPREVLTTNPRRLSIIAE 335
Query: 325 --HDD----ESWKT-----LDEMIQNS---------EEFYADLGIAYRVVNIVSGALNHA 364
D ++WK L +I++S + + L + +I + L
Sbjct: 336 SIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILL--- 392
Query: 365 AAKKLDLEAWFPGSGAFRELVSCSNCLAYQSRRLLVRYGQTKKMNEKIEFVHMLNATACA 424
+ WF + +V L+ + E + +
Sbjct: 393 --SLI----WFDVIKSDVMVVVNK----LHKYSLVEKQP-----KESTISIPSIYLELKV 437
Query: 425 TTRVICAILETHQTETGVRIPDCLRKFVPAVYVNEAGEIPFVKTAPIDE--------EET 476
A+ H+ I D +P + ++ P +D+
Sbjct: 438 KLENEYAL---HR-----SIVDHYN--IPKTFDSDDLIPP-----YLDQYFYSHIGHHLK 482
Query: 477 KKQKKQKEGMKKKVLID----EAMIQNEKDLIATEKERNNALREVIGKGEKVGDSAPEKD 532
+ ++ + + V +D E I+++ N L+++ + D+ P+ +
Sbjct: 483 NIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYE 542
Query: 533 ELDD---KYLIATSEQPICAVHRD 553
L + +L E IC+ + D
Sbjct: 543 RLVNAILDFLPKIEENLICSKYTD 566
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD
domain, histone-lysine N-methyltransferase, H3 lysine-4
specific MLL3; NMR {Homo sapiens}
Length = 111
Score = 46.9 bits (111), Expect = 2e-06
Identities = 17/56 (30%), Positives = 21/56 (37%), Gaps = 1/56 (1%)
Query: 1023 FPQPPLSKQAW-GVLSHKCGLCHLSHDPHTMAKCDTCHLYYHLACLDPPLLRMPKK 1077
PL + W C C S + M CDTC YH CL P + +P
Sbjct: 39 IAVTPLKRAGWQCPECKVCQNCKQSGEDSKMLVCDTCDKGYHTFCLQPVMKSVPTN 94
Score = 44.2 bits (104), Expect = 1e-05
Identities = 26/133 (19%), Positives = 47/133 (35%), Gaps = 30/133 (22%)
Query: 632 VCCVCLGERSDDVNEIVECDSCGVTVHEVKIQQEFLAIKFLIRYLLFWFQLEDFSKFSKI 691
C VC + D+ + C +CG H + + + +
Sbjct: 9 NCAVC--DSPGDLLDQFFCTTCGQHYH-----------GMCLDIAVTPLKRAGWQCPECK 55
Query: 692 LVCCVCLGERSDDVNEIVECDSCGVTVHEGCYGVQDTASISSTVSSCSTEPWFCESCRAG 751
VC C ++S + ++++ CD+C H C + + S T W C++CR
Sbjct: 56 -VCQNC--KQSGEDSKMLVCDTCDKGYHTFC--------LQPVMKSVPTNGWKCKNCRI- 103
Query: 752 IAEPTCELCPNFG 764
C P+ G
Sbjct: 104 -----CISGPSSG 111
Score = 43.8 bits (103), Expect = 2e-05
Identities = 11/39 (28%), Positives = 16/39 (41%)
Query: 1038 HKCGLCHLSHDPHTMAKCDTCHLYYHLACLDPPLLRMPK 1076
C +C D C TC +YH CLD + + +
Sbjct: 8 ANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVTPLKR 46
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken
structural genomics/proteomics initiative, RSGI, DNA
binding protein; NMR {Arabidopsis thaliana} SCOP:
g.50.1.2
Length = 72
Score = 42.6 bits (100), Expect = 2e-05
Identities = 15/55 (27%), Positives = 23/55 (41%), Gaps = 9/55 (16%)
Query: 695 CVCLGERSDDVNEIVECDSCGVTVHEGCYGVQDTASISSTVSSCSTEPWFCESCR 749
C C G + DD ++ CD CGV H C G+ + ++ + C C
Sbjct: 19 CKC-GTKDDDGERMLACDGCGVWHHTRCIGINNADAL--------PSKFLCFRCI 64
Score = 27.9 bits (62), Expect = 3.0
Identities = 11/25 (44%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
Query: 634 CVCLGERSDDVNEIVECDSCGVTVH 658
C C G + DD ++ CD CGV H
Sbjct: 19 CKC-GTKDDDGERMLACDGCGVWHH 42
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 56
Score = 41.6 bits (98), Expect = 3e-05
Identities = 16/35 (45%), Positives = 19/35 (54%)
Query: 1042 LCHLSHDPHTMAKCDTCHLYYHLACLDPPLLRMPK 1076
C + + CDTC YHL CLDPPL +PK
Sbjct: 11 FCSVCRKSGQLLMCDTCSRVYHLDCLDPPLKTIPK 45
Score = 27.3 bits (61), Expect = 4.3
Identities = 11/58 (18%), Positives = 19/58 (32%), Gaps = 13/58 (22%)
Query: 693 VCCVCLGERSDDVNEIVECDSCGVTVHEGCYGVQDTASISSTVSSCSTEPWFCESCRA 750
C VC +++ CD+C H C + + + W C C+
Sbjct: 11 FCSVC-----RKSGQLLMCDTCSRVYHLDC--------LDPPLKTIPKGMWICPRCQD 55
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex,
transcription; 1.43A {Homo sapiens}
Length = 60
Score = 41.6 bits (98), Expect = 3e-05
Identities = 16/37 (43%), Positives = 19/37 (51%)
Query: 1040 CGLCHLSHDPHTMAKCDTCHLYYHLACLDPPLLRMPK 1076
C + + CDTC YHL CLDPPL +PK
Sbjct: 5 EDFCSVCRKSGQLLMCDTCSRVYHLDCLDPPLKTIPK 41
Score = 27.4 bits (61), Expect = 3.8
Identities = 11/58 (18%), Positives = 19/58 (32%), Gaps = 13/58 (22%)
Query: 693 VCCVCLGERSDDVNEIVECDSCGVTVHEGCYGVQDTASISSTVSSCSTEPWFCESCRA 750
C VC +++ CD+C H C + + + W C C+
Sbjct: 7 FCSVC-----RKSGQLLMCDTCSRVYHLDC--------LDPPLKTIPKGMWICPRCQD 51
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger,
transferase-structural protein; 1.47A {Homo sapiens}
PDB: 2ln0_A
Length = 112
Score = 42.7 bits (100), Expect = 4e-05
Identities = 23/125 (18%), Positives = 40/125 (32%), Gaps = 26/125 (20%)
Query: 632 VCCVCLGE----RSDDVNEIVECDSCGVTVHE--VKIQQEFLAIKFLIRYLLFWFQLEDF 685
+C CLG R E++ C CG + H +K E +++
Sbjct: 7 ICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTV------------RVKAL 54
Query: 686 SKFSKILVCCVCLGERSDDVNEIVECDSCGVTVHEGCYGVQDTASISSTVSSCSTEPWFC 745
C ++ + + ++ CDSC H C ++ W C
Sbjct: 55 RWQCIECKTCSSCRDQGKNADNMLFCDSCDRGFHMEC--------CDPPLTRMPKGMWIC 106
Query: 746 ESCRA 750
+ CR
Sbjct: 107 QICRP 111
Score = 42.4 bits (99), Expect = 8e-05
Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 1038 HKCGLCHL-SHDPHTMAKCDTCHLYYHLACLDPPLLRMPK 1076
C C + M CD+C +H+ C DPPL RMPK
Sbjct: 62 KTCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPK 101
Score = 32.7 bits (74), Expect = 0.17
Identities = 10/50 (20%), Positives = 17/50 (34%), Gaps = 7/50 (14%)
Query: 1040 CGLCHLSHD------PHTMAKCDTCHLYYHLACLDPPLLRMPKKTKLMGW 1083
C C + + P + C C H +CL + + K + W
Sbjct: 8 CSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFS-PELTVRVKALRW 56
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain,
-structure, transcription; NMR {Homo sapiens} SCOP:
g.50.1.2
Length = 88
Score = 41.8 bits (98), Expect = 5e-05
Identities = 10/37 (27%), Positives = 16/37 (43%)
Query: 1040 CGLCHLSHDPHTMAKCDTCHLYYHLACLDPPLLRMPK 1076
+C + P + C+ C +HL C P L +P
Sbjct: 25 ATICRVCQKPGDLVMCNQCEFCFHLDCHLPALQDVPG 61
Score = 28.7 bits (64), Expect = 2.7
Identities = 12/58 (20%), Positives = 17/58 (29%), Gaps = 13/58 (22%)
Query: 693 VCCVCLGERSDDVNEIVECDSCGVTVHEGCYGVQDTASISSTVSSCSTEPWFCESCRA 750
+C VC ++V C+ C H C + E W C C
Sbjct: 27 ICRVC-----QKPGDLVMCNQCEFCFHLDC--------HLPALQDVPGEEWSCSLCHV 71
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein;
NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Length = 61
Score = 39.7 bits (93), Expect = 2e-04
Identities = 15/39 (38%), Positives = 20/39 (51%)
Query: 1038 HKCGLCHLSHDPHTMAKCDTCHLYYHLACLDPPLLRMPK 1076
H C + D + CDTC YH+ CL+PPL +P
Sbjct: 7 HHMEFCRVCKDGGELLCCDTCPSSYHIHCLNPPLPEIPN 45
Score = 28.1 bits (63), Expect = 2.1
Identities = 13/58 (22%), Positives = 18/58 (31%), Gaps = 13/58 (22%)
Query: 693 VCCVCLGERSDDVNEIVECDSCGVTVHEGCYGVQDTASISSTVSSCSTEPWFCESCRA 750
C VC D E++ CD+C + H C + W C C
Sbjct: 11 FCRVC-----KDGGELLCCDTCPSSYHIHCLNPP--------LPEIPNGEWLCPRCTC 55
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta,
PHD, protein binding, peptide binding metal binding
protein; NMR {Homo sapiens}
Length = 61
Score = 39.3 bits (92), Expect = 3e-04
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 1042 LCHLSHDPHTMAKCDTCHLYYHLACLDPPLLRMPK 1076
C + + CDTC YH+ CLDP + + P+
Sbjct: 13 YCEVCQQGGEIILCDTCPRAYHMVCLDPDMEKAPE 47
Score = 29.7 bits (67), Expect = 0.66
Identities = 13/58 (22%), Positives = 17/58 (29%), Gaps = 13/58 (22%)
Query: 693 VCCVCLGERSDDVNEIVECDSCGVTVHEGCYGVQDTASISSTVSSCSTEPWFCESCRA 750
C VC EI+ CD+C H C + + W C C
Sbjct: 13 YCEVC-----QQGGEIILCDTCPRAYHMVC--------LDPDMEKAPEGKWSCPHCEK 57
>1ati_A Glycyl-tRNA synthetase; protein biosynthesis, ligase,
aminoacyl-tRNA SYN; 2.75A {Thermus thermophilus} SCOP:
c.51.1.1 d.104.1.1 PDB: 1b76_A* 1ggm_A*
Length = 505
Score = 43.7 bits (103), Expect = 3e-04
Identities = 53/288 (18%), Positives = 82/288 (28%), Gaps = 65/288 (22%)
Query: 13 PEKDELDDKYLIATSEQPICA----VHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTR 68
P YL + Q I V + L + FR E+
Sbjct: 175 PRGGRGLLAYLRPETAQGIFVNFKNVLDATSRK---LGFGIAQIGKAFRNEITPR----N 227
Query: 69 GIFRVHQFEKVEQFVLTSPHDDESWKMLDEMIQNSEEFYADLGIA---YRVVNIVSGALN 125
IFRV +FE++E P +DE W ++ +++ ++G++ +
Sbjct: 228 FIFRVREFEQMEIEYFVRPGEDEYWH--RYWVEERLKWWQEMGLSRENLVPYQQPPESSA 285
Query: 126 HAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQSRRLLVRYGQTKQKIYATACATTRVICA 185
H A +D+ FP EL + D+ L +
Sbjct: 286 HYAKATVDILYRFPHG--SLELEGIAQRTDFD---LGSHTKDQEALGITARVLRNEHSTQ 340
Query: 186 ILETHQTETGVRIPDCLRKFVPAVY-------------LNEA--------GEIPFVKTAP 224
L ETG + FVP V L EA GE V
Sbjct: 341 RLAYRDPETG-------KWFVPYVIEPSAGVDRGVLALLAEAFTREELPNGEERIVLKLK 393
Query: 225 IDEEETK-------KQKKQKEGMKKKLTMSLFSQVGSHGRDTRGIFRV 265
K K + + K+L L + G+ RV
Sbjct: 394 PQLAPIKVAVIPLVKNRPEITEYAKRLKARLLA---------LGLGRV 432
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced,
nucleosome, E3 ligase, transcription; NMR {Homo sapiens}
PDB: 2ke1_A 2kft_A
Length = 66
Score = 39.0 bits (91), Expect = 3e-04
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
Query: 1040 CGLCHLSHDPHTMAKCDTCHLYYHLACLDPPLLRMPK 1076
C +C D + CD C +HLACL PPL +P
Sbjct: 11 CAVCR---DGGELICCDGCPRAFHLACLSPPLREIPS 44
Score = 28.6 bits (64), Expect = 1.5
Identities = 15/65 (23%), Positives = 21/65 (32%), Gaps = 13/65 (20%)
Query: 693 VCCVCLGERSDDVNEIVECDSCGVTVHEGCYGVQDTASISSTVSSCSTEPWFCESCRAGI 752
C VC D E++ CD C H C +S + + W C SC
Sbjct: 10 ECAVC-----RDGGELICCDGCPRAFHLAC--------LSPPLREIPSGTWRCSSCLQAT 56
Query: 753 AEPTC 757
+
Sbjct: 57 VQEVQ 61
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein,
signal transduction, transcription, metal BI WNT
proteins; 1.90A {Homo sapiens}
Length = 105
Score = 38.7 bits (89), Expect = 0.001
Identities = 23/100 (23%), Positives = 38/100 (38%), Gaps = 14/100 (14%)
Query: 694 CCVCLGERSDDVNEIVECDSCGVTVHEGCYGVQDTASISSTVSSCSTEPWFCESCRAGIA 753
C C E +DD + I+ SC H C G+ ++A +++ ++ W C+ C
Sbjct: 6 CGACRSEVNDDQDAILCEASCQKWFHRECTGMTESA--YGLLTTEASAVWACDLCLKTKE 63
Query: 754 EP------------TCELCPNFGENHLRGLFENIKNGHAQ 781
T L E L+G ++I H Q
Sbjct: 64 GSGSGSGSQFVYVFTTHLANTAAEAVLQGRADSILAYHQQ 103
Score = 28.0 bits (61), Expect = 5.6
Identities = 9/50 (18%), Positives = 17/50 (34%), Gaps = 4/50 (8%)
Query: 1038 HKCGLCHLS-HDPHTMAKCD-TCHLYYHLAC--LDPPLLRMPKKTKLMGW 1083
+ CG C +D C+ +C ++H C + + W
Sbjct: 4 YPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVW 53
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway,
WNT signaling complex, chromosomal rearrangement,
signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A
2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Length = 65
Score = 37.0 bits (85), Expect = 0.002
Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 4/66 (6%)
Query: 686 SKFSKILVCCVCLGERSDDVNEIVECD-SCGVTVHEGCYGVQDTASISSTVSSCSTEPWF 744
S + C +C E +DD + + C+ SC H C G+ +TA +++ ++ W
Sbjct: 3 SSSDPVYPCGICTNEVNDD-QDAILCEASCQKWFHRICTGMTETA--YGLLTAEASAVWG 59
Query: 745 CESCRA 750
C++C A
Sbjct: 60 CDTCMA 65
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 70
Score = 37.2 bits (86), Expect = 0.002
Identities = 14/63 (22%), Positives = 22/63 (34%), Gaps = 16/63 (25%)
Query: 693 VCCVCLGERSDDVNEIVECDSCGVTV---HEGCYGVQDTASISSTVSSCSTEPWFCESCR 749
C+C E+V CD+ + H GC G+ + W+C C
Sbjct: 7 GYCIC---NQVSYGEMVGCDNQDCPIEWFHYGCVGLTEA----------PKGKWYCPQCT 53
Query: 750 AGI 752
A +
Sbjct: 54 AAM 56
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative
splicing, metal-binding, nucleus, phosphoprotein,
transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Length = 75
Score = 36.4 bits (84), Expect = 0.004
Identities = 10/37 (27%), Positives = 14/37 (37%)
Query: 1040 CGLCHLSHDPHTMAKCDTCHLYYHLACLDPPLLRMPK 1076
C C+ D M CD C +YH C+ +
Sbjct: 21 CPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMAAPPEE 57
Score = 34.4 bits (79), Expect = 0.016
Identities = 16/68 (23%), Positives = 26/68 (38%), Gaps = 10/68 (14%)
Query: 689 SKILVCCVCLGERSDDVNEIVECDSCGVTVHEGCYGVQDTASISSTVSSCSTEPWFCESC 748
++I +C C + DD + ++ CD C H C G+ + WFC C
Sbjct: 16 NQIWICPGC--NKPDDGSPMIGCDDCDDWYHWPCVGI--------MAAPPEEMQWFCPKC 65
Query: 749 RAGIAEPT 756
I +
Sbjct: 66 ANKIKKDK 73
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC,
structural genom type zinc finger, protein binding, zinc
ION binding; 1.85A {Homo sapiens}
Length = 68
Score = 36.0 bits (83), Expect = 0.004
Identities = 13/58 (22%), Positives = 23/58 (39%), Gaps = 11/58 (18%)
Query: 692 LVCCVCLGERSDDVNEIVECDSCGVTVHEGCYGVQDTASISSTVSSCSTEPWFCESCR 749
LV C C + ++EC+ C +H C ++ + E + C+ CR
Sbjct: 19 LVTCFC--MKPFAGRPMIECNECHTWIHLSCAKIRKSNVP---------EVFVCQKCR 65
Score = 29.8 bits (67), Expect = 0.58
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 1043 CHLSHDPHTMAKCDTCHLYYHLACL 1067
C M +C+ CH + HL+C
Sbjct: 24 CMKPFAGRPMIECNECHTWIHLSCA 48
>1wem_A Death associated transcription factor 1; structural genomics, PHD
domain, death inducer- obliterator 1(DIO-1); NMR {Mus
musculus} SCOP: g.50.1.2
Length = 76
Score = 36.4 bits (84), Expect = 0.004
Identities = 11/58 (18%), Positives = 23/58 (39%), Gaps = 5/58 (8%)
Query: 693 VCCVCLGERSDDVNEIVECDSCGVTVHEGCYGVQDTASISSTVSSCSTEPWFCESCRA 750
+ C+C + + ++ CD C H C G+ + + + E + C +C
Sbjct: 17 LYCIC--RQPHNNRFMICCDRCEEWFHGDCVGISEAR---GRLLERNGEDYICPNCTI 69
Score = 31.4 bits (71), Expect = 0.20
Identities = 8/28 (28%), Positives = 13/28 (46%)
Query: 1040 CGLCHLSHDPHTMAKCDTCHLYYHLACL 1067
+C H+ M CD C ++H C+
Sbjct: 18 YCICRQPHNNRFMICCDRCEEWFHGDCV 45
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain,
TGF-beta, epigenetics, methylation, K9ME3, K14AC,
transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB:
3u5m_A* 3u5o_A* 3u5p_A*
Length = 207
Score = 38.7 bits (89), Expect = 0.004
Identities = 11/44 (25%), Positives = 18/44 (40%), Gaps = 3/44 (6%)
Query: 1040 CGLCHLSHDPHTMAKCDTCHLYYHLACLDPPLLRMPKKTKLMGW 1083
C +C + + C+ C +HL C P LL P + +
Sbjct: 10 CAVCQ---NGGDLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTF 50
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger,
bromodomain, SUMO, acetylation, alternative splicing,
metal-binding, nucleus; NMR {Homo sapiens}
Length = 189
Score = 38.7 bits (89), Expect = 0.004
Identities = 10/37 (27%), Positives = 16/37 (43%)
Query: 1040 CGLCHLSHDPHTMAKCDTCHLYYHLACLDPPLLRMPK 1076
+C + P + C+ C +HL C P L +P
Sbjct: 2 ATICRVCQKPGDLVMCNQCEFCFHLDCHLPALQDVPG 38
Score = 29.8 bits (66), Expect = 3.3
Identities = 16/108 (14%), Positives = 27/108 (25%), Gaps = 15/108 (13%)
Query: 693 VCCVCLGERSDDVNEIVECDSCGVTVHEGCYGVQDTASISSTVSSCSTEPWFCESCRAGI 752
+C VC ++V C+ C H C+ + E W C C +
Sbjct: 4 ICRVC-----QKPGDLVMCNQCEFCFHLDCHLP--------ALQDVPGEEWSCSLCH--V 48
Query: 753 AEPTCELCPNFGENHLRGLFENIKNGHAQRDRMRYHACHLRDSRDSSD 800
E + + K A + + L
Sbjct: 49 LPDLKEEDGSLSLDGADSTGVVAKLSPANQRKCERVLLALFCHEPCRP 96
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain,
leukemia, apoptosis, chromati regulator, DNA-binding,
isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A*
3lqj_A* 2kyu_A
Length = 183
Score = 38.0 bits (87), Expect = 0.007
Identities = 16/103 (15%), Positives = 33/103 (32%), Gaps = 3/103 (2%)
Query: 694 CCVCL--GERSDDVNEIVECDSCGVTVHEGCYGVQDTASISSTVSSCSTEPWFCESCRAG 751
C +C + D +++++C C VH C + D + + + C +C
Sbjct: 5 CPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSD-EMYEILSNLPESVAYTCVNCTER 63
Query: 752 IAEPTCELCPNFGENHLRGLFENIKNGHAQRDRMRYHACHLRD 794
+ L+ + + N +RY D
Sbjct: 64 HPAEWRLALEKELQISLKQVLTALLNSRTTSHLLRYRQQQPLD 106
Score = 31.9 bits (71), Expect = 0.70
Identities = 9/34 (26%), Positives = 13/34 (38%), Gaps = 4/34 (11%)
Query: 1040 CGLCHLSHDPHT----MAKCDTCHLYYHLACLDP 1069
C LC +D M +C C + H C +
Sbjct: 5 CPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENL 38
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain,
nuclear protein, structural structural genomics
consortium, SGC, protein binding; HET: M3L; 1.67A {Homo
sapiens}
Length = 52
Score = 34.6 bits (80), Expect = 0.008
Identities = 11/55 (20%), Positives = 21/55 (38%), Gaps = 11/55 (20%)
Query: 695 CVCLGERSDDVNEIVECDSCGVTVHEGCYGVQDTASISSTVSSCSTEPWFCESCR 749
C C + ++EC+ C +H C ++ + E + C+ CR
Sbjct: 7 CFC--MKPFAGRPMIECNECHTWIHLSCAKIRKSNVP---------EVFVCQKCR 50
Score = 30.4 bits (69), Expect = 0.30
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 1043 CHLSHDPHTMAKCDTCHLYYHLAC 1066
C M +C+ CH + HL+C
Sbjct: 9 CMKPFAGRPMIECNECHTWIHLSC 32
>1wep_A PHF8; structural genomics, PHD domain, riken structural
genomics/proteomics initiative, RSGI, DNA binding
protein; NMR {Mus musculus} SCOP: g.50.1.2
Length = 79
Score = 35.3 bits (81), Expect = 0.009
Identities = 14/59 (23%), Positives = 26/59 (44%), Gaps = 10/59 (16%)
Query: 693 VCCVCLGERSDDVNE-IVECDSCGVTVHEGCYGVQDTASISSTVSSCSTEPWFCESCRA 750
V C+C + +VN ++EC C H C G+++ ++ + + C C A
Sbjct: 13 VYCLC--RQPYNVNHFMIECGLCQDWFHGSCVGIEEE-------NAVDIDIYHCPDCEA 62
Score = 28.8 bits (64), Expect = 2.0
Identities = 7/29 (24%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Query: 1040 CGLCHLSHDPH-TMAKCDTCHLYYHLACL 1067
LC ++ + M +C C ++H +C+
Sbjct: 14 YCLCRQPYNVNHFMIECGLCQDWFHGSCV 42
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene
regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Length = 62
Score = 34.1 bits (78), Expect = 0.018
Identities = 11/61 (18%), Positives = 18/61 (29%), Gaps = 16/61 (26%)
Query: 693 VCCVCLGERSDDVNEIVECDSCGVTV---HEGCYGVQDTASISSTVSSCSTEPWFCESCR 749
C+C E++ CD+ + H C + W+C CR
Sbjct: 12 TYCLC---NQVSYGEMIGCDNEQCPIEWFHFSCVSLTYK----------PKGKWYCPKCR 58
Query: 750 A 750
Sbjct: 59 G 59
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger,
bromodomain, H4K16 acetylation, breast C
transcription-protein binding complex; HET: ALY; 1.70A
{Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Length = 184
Score = 36.5 bits (84), Expect = 0.019
Identities = 10/38 (26%), Positives = 16/38 (42%), Gaps = 3/38 (7%)
Query: 1040 CGLCHLSHDPHTMAKCDTCHLYYHLACLDPPLLRMPKK 1077
C +C + + C+ C +HL+C P L P
Sbjct: 7 CAVCQ---NGGELLCCEKCPKVFHLSCHVPTLTNFPSG 41
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken
structural genomics/proteomics initiative, RSGI, DNA
binding protein; NMR {Arabidopsis thaliana} SCOP:
g.50.1.2
Length = 78
Score = 34.3 bits (78), Expect = 0.022
Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 7/57 (12%)
Query: 695 CVCLGERSDDVNEIVECDS--CGVTVHEGCYGVQDTASISSTVSSCSTEPWFCESCR 749
CVC S + + +++C+ C V H GC + D + E ++CE CR
Sbjct: 19 CVC--GNSLETDSMIQCEDPRCHVWQHVGCVILPDK---PMDGNPPLPESFYCEICR 70
Score = 27.4 bits (60), Expect = 5.4
Identities = 11/43 (25%), Positives = 16/43 (37%), Gaps = 4/43 (9%)
Query: 575 ECDAGMCRTYFHVTCAQREGLLSEATSEEVDQADPFY-AHCRL 616
+C+ C + HV C L + + FY CRL
Sbjct: 32 QCEDPRCHVWQHVGCV---ILPDKPMDGNPPLPESFYCEICRL 71
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain
(PHD), histone binding; NMR {Oryza sativa japonica
group}
Length = 68
Score = 33.8 bits (77), Expect = 0.023
Identities = 15/56 (26%), Positives = 22/56 (39%), Gaps = 6/56 (10%)
Query: 695 CVCLGERSDDVNEI-VECDSCGVTVHEGCYGVQDTASISSTVSSCSTEPWFCESCR 749
C+C + + I E C V H C + D S+ V ++CE CR
Sbjct: 13 CIC-SSTMVNDSMIQCEDQRCQVWQHLNCVLIPDKPGESAEVP----PVFYCELCR 63
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING,
epigenetics, alternative splicing, metal-binding,
phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens}
PDB: 2pnx_A*
Length = 59
Score = 33.3 bits (76), Expect = 0.028
Identities = 11/61 (18%), Positives = 17/61 (27%), Gaps = 16/61 (26%)
Query: 693 VCCVCLGERSDDVNEIVECDSCGVTV---HEGCYGVQDTASISSTVSSCSTEPWFCESCR 749
C+C E++ CD+ + H C + WFC C
Sbjct: 10 TYCLC---HQVSYGEMIGCDNPDCPIEWFHFACVDLTTK----------PKGKWFCPRCV 56
Query: 750 A 750
Sbjct: 57 Q 57
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine
trimethylation, protein, histone-binding protein,
transcription-structural complex; HET: M3L; 0.93A {Homo
sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Length = 129
Score = 34.8 bits (79), Expect = 0.037
Identities = 18/124 (14%), Positives = 31/124 (25%), Gaps = 11/124 (8%)
Query: 642 DDVNEIVECDSCGVTVHEVKIQQEFLAIKFLIRYLL-----FWFQLEDFSKFSKILVCCV 696
IV C +CG V+ + + + + C
Sbjct: 3 LGSMGIVSCTACGQQVNHFQKDSIYRHPSLQVLICKNCFKYYMSDDISRDSDGMDEQCRW 62
Query: 697 CLGERSDDVNEIVECDSCGVTVHEGCYGVQDTASISSTVSSCSTEPWFCESCRAGIAEPT 756
C + ++ CD C + C ST+ + W+C C
Sbjct: 63 C-----AEGGNLICCDFCHNAFCKKCILRNLGRRELSTIMDEN-NQWYCYICHPEPLLDL 116
Query: 757 CELC 760
C
Sbjct: 117 VTAC 120
Score = 29.8 bits (66), Expect = 2.4
Identities = 8/31 (25%), Positives = 12/31 (38%)
Query: 1043 CHLSHDPHTMAKCDTCHLYYHLACLDPPLLR 1073
C + + CD CH + C+ L R
Sbjct: 60 CRWCAEGGNLICCDFCHNAFCKKCILRNLGR 90
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation,
alternative splicing, anti-oncogene, cell cycle, coiled
C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A
{Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Length = 60
Score = 32.9 bits (75), Expect = 0.045
Identities = 12/61 (19%), Positives = 21/61 (34%), Gaps = 16/61 (26%)
Query: 693 VCCVCLGERSDDVNEIVECDSCGVTV---HEGCYGVQDTASISSTVSSCSTEPWFCESCR 749
C+C E++ CD+ ++ H C G +++ WFC C
Sbjct: 11 TYCLC---HQVSYGEMIGCDNPDCSIEWFHFACVG----------LTTKPRGKWFCPRCS 57
Query: 750 A 750
Sbjct: 58 Q 58
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural
genomics, PHD domain, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
SCOP: g.50.1.2 PDB: 1wes_A
Length = 71
Score = 33.0 bits (75), Expect = 0.049
Identities = 12/61 (19%), Positives = 21/61 (34%), Gaps = 16/61 (26%)
Query: 693 VCCVCLGERSDDVNEIVECDSCGVTV---HEGCYGVQDTASISSTVSSCSTEPWFCESCR 749
C+C E++ CD+ ++ H C G+ ++ WFC C
Sbjct: 17 TYCLC---HQVSYGEMIGCDNPDCSIEWFHFACVGL----------TTKPRGKWFCPRCS 63
Query: 750 A 750
Sbjct: 64 Q 64
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD
domain, ING1-like protein, DNA binding protein, NPPSFA;
NMR {Mus musculus} SCOP: g.50.1.2
Length = 91
Score = 33.6 bits (76), Expect = 0.055
Identities = 12/61 (19%), Positives = 19/61 (31%), Gaps = 16/61 (26%)
Query: 693 VCCVCLGERSDDVNEIVECDS---CGVTVHEGCYGVQDTASISSTVSSCSTEPWFCESCR 749
C+C E++ CD+ H C G+ ++ WFC C
Sbjct: 37 TYCLC---HQVSYGEMIGCDNPDCSIEWFHFACVGL----------TTKPRGKWFCPRCS 83
Query: 750 A 750
Sbjct: 84 Q 84
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger,
histone-binding, NUC protein; HET: M3L; 1.78A {Homo
sapiens}
Length = 75
Score = 33.0 bits (75), Expect = 0.058
Identities = 16/64 (25%), Positives = 26/64 (40%), Gaps = 8/64 (12%)
Query: 693 VCCVCLGERSDDVNEIVECDSCGVTVHEGCYGVQDTASISSTVSSCSTEPWFCESCRAGI 752
V CVC D ++ECD+C H C GV++ + + + C +C
Sbjct: 11 VYCVC-RLPYDVTRFMIECDACKDWFHGSCVGVEEE-------EAPDIDIYHCPNCEKTH 62
Query: 753 AEPT 756
+ T
Sbjct: 63 GKST 66
Score = 28.3 bits (63), Expect = 2.9
Identities = 9/27 (33%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 1042 LCHLSHDPHT-MAKCDTCHLYYHLACL 1067
+C L +D M +CD C ++H +C+
Sbjct: 14 VCRLPYDVTRFMIECDACKDWFHGSCV 40
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken
structural genomics/proteomics initiative, RSGI, DNA
binding protein; NMR {Arabidopsis thaliana} SCOP:
g.50.1.2
Length = 64
Score = 32.1 bits (73), Expect = 0.088
Identities = 12/62 (19%), Positives = 18/62 (29%), Gaps = 8/62 (12%)
Query: 689 SKILVCCVCLGERSDDVNEIVECDSCGVTVHEGCYGVQDTASISSTVSSCSTEPWFCESC 748
C C GE + CD C + H C + + + + C SC
Sbjct: 4 GSSGQCGAC-GESYAADEFWICCDLCEMWFHGKCVKITPARAE-------HIKQYKCPSC 55
Query: 749 RA 750
Sbjct: 56 SN 57
Score = 30.6 bits (69), Expect = 0.27
Identities = 9/29 (31%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Query: 1040 CGLCHLSHDPH-TMAKCDTCHLYYHLACL 1067
CG C S+ CD C +++H C+
Sbjct: 9 CGACGESYAADEFWICCDLCEMWFHGKCV 37
>1nj1_A PROR, proline-tRNA synthetase, proline--tRNA ligase;
protein-aminoacyladenylate complex class-II tRNA
synthetase,; HET: 5CA; 2.55A {Methanothermobacter
thermautotrophicusorganism_taxid} SCOP: c.51.1.1
d.68.5.1 d.104.1.1 PDB: 1nj2_A 1nj5_A* 1nj6_A*
Length = 501
Score = 35.5 bits (82), Expect = 0.11
Identities = 38/204 (18%), Positives = 78/204 (38%), Gaps = 38/204 (18%)
Query: 15 KDELDDKYLI-ATSEQPICAV-------HRDSWLPEASLPIRYLGVSTCFRQEVGSHGRD 66
+L K + TSE + + H D LP+R+ V FR E +
Sbjct: 125 LSKLQRKLALRPTSETVMYPMFALWVRSHTD-------LPMRFYQVVNTFRYET----KH 173
Query: 67 TRGIFRVHQFEKVEQFVLTSPHDD--ESWKMLDEMIQNSEEFYADLGIAYRVV-----NI 119
TR + RV + + H E+ + ++ ++ +EF+ LGI Y + +
Sbjct: 174 TRPLIRVREI--TTFKEAHTIHATASEAEEQVERAVEIYKEFFNSLGIPYLITRRPPWDK 231
Query: 120 VSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQSRRLLVRY---GQTKQKIYATA 176
G+ + + P ++ + N +R +++ + ++ T
Sbjct: 232 FPGSEY-----TVAFDTLMPDGKT-LQIGTVHNLGQTFARTFEIKFETPEGDHEYVHQTC 285
Query: 177 CA-TTRVICAILETHQTETGVRIP 199
+ RVI +++ H E+G+ +P
Sbjct: 286 YGLSDRVIASVIAIHGDESGLCLP 309
>3ial_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase,
AARS, prors, cysrs, RS, translation, ATP-binding,
nucleotide-binding; HET: PR8; 2.20A {Giardia lamblia
atcc 50803}
Length = 518
Score = 35.1 bits (81), Expect = 0.11
Identities = 41/248 (16%), Positives = 80/248 (32%), Gaps = 43/248 (17%)
Query: 15 KDELDDKYLI-ATSEQPICAV-------HRDSWLPEASLPIRYLGVSTCFRQEVGSHGRD 66
L+++ + TSE I ++ ++D LP++ T FR E ++
Sbjct: 110 LQPLEERLALRPTSETAIYSMFSKWVRSYKD-------LPLKIHQTCTIFRHET----KN 158
Query: 67 TRGIFRVHQFEKVEQFVLTSPH-----DDESWKMLDEMIQNSEEFYAD-LGIAYRVVNIV 120
T+ + RV + E H +++ L + + + ++D L + + V
Sbjct: 159 TKPLIRVREIHWNEA------HCCHATAEDAVSQLSDYWKVIDTIFSDELCFKGQKLRRV 212
Query: 121 SGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQSRRLLVRYG---QTKQKIYATAC 177
A + P G + N S + Y Y T
Sbjct: 213 CWDRFPGADYSEVSDVVMP-CGRVLQTAGIHNLGQRFSSTFDILYANKANESVHPYLTCA 271
Query: 178 A-TTRVICAILETHQTETGVRIPDCLRKFVPAVYLNEAGEIPFVKTAPIDEEETKKQKKQ 236
+TRV+ L H G+ +P P + IP ++E ++ +
Sbjct: 272 GISTRVLACALSIHGDSGGLVLP-------PLIAPIHVVIIPIGCGKKNNQESDQQVLGK 324
Query: 237 KEGMKKKL 244
+ L
Sbjct: 325 VNEIADTL 332
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural
protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Length = 142
Score = 33.6 bits (76), Expect = 0.13
Identities = 21/126 (16%), Positives = 37/126 (29%), Gaps = 11/126 (8%)
Query: 640 RSDDVNEIVECDSCGVTVH----EVKIQQEFLAIKFLIR-YLLFWFQLEDFSKFSKILVC 694
R D ++ IV C +CG V+ + + L + + + C
Sbjct: 7 RGDGLHGIVSCTACGQQVNHFQKDSIYRHPSLQVLICKNCFKYYMSDDISRDSDGMDEQC 66
Query: 695 CVCLGERSDDVNEIVECDSCGVTVHEGCYGVQDTASISSTVSSCSTEPWFCESCRAGIAE 754
C + ++ CD C + C ST+ + W+C C
Sbjct: 67 RWC-----AEGGNLICCDFCHNAFCKKCILRNLGRKELSTIMDEN-NQWYCYICHPEPLL 120
Query: 755 PTCELC 760
C
Sbjct: 121 DLVTAC 126
Score = 30.6 bits (68), Expect = 1.5
Identities = 8/31 (25%), Positives = 12/31 (38%)
Query: 1043 CHLSHDPHTMAKCDTCHLYYHLACLDPPLLR 1073
C + + CD CH + C+ L R
Sbjct: 66 CRWCAEGGNLICCDFCHNAFCKKCILRNLGR 96
>1nj8_A Proline-tRNA synthetase, proline--tRNA ligase; class-II tRNA
synthetase; 3.20A {Methanocaldococcus jannaschii} SCOP:
c.51.1.1 d.68.5.1 d.104.1.1
Length = 459
Score = 35.0 bits (81), Expect = 0.13
Identities = 47/204 (23%), Positives = 78/204 (38%), Gaps = 38/204 (18%)
Query: 15 KDELDDKYLI-ATSEQPICAV-------HRDSWLPEASLPIRYLGVSTCFRQEVGSHGRD 66
K +LD K + TSE PI + H D LPI+ + FR E +
Sbjct: 93 KTQLDVKLALRPTSETPIYYMMKLWVKVHTD-------LPIKIYQIVNTFRYET----KH 141
Query: 67 TRGIFRVHQFEKVEQFVLTSPHDD--ESWKMLDEMIQNSEEFYADLGIAYRVV-----NI 119
TR + R+ + + + H E+ + E I ++F+ LGI Y + +
Sbjct: 142 TRPLIRLREI--MTFKEAHTAHSTKEEAENQVKEAISIYKKFFDTLGIPYLISKRPEWDK 199
Query: 120 VSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQSRRLLVRY---GQTKQKIYATA 176
GA + + FP G ++ + N S+ + + K Y T
Sbjct: 200 FPGAEY-----TMAFDTIFP-DGRTMQIATVHNLGQNFSKTFEIIFETPTGDKDYAYQTC 253
Query: 177 CA-TTRVICAILETHQTETGVRIP 199
+ RVI +I+ H E G+ +P
Sbjct: 254 YGISDRVIASIIAIHGDEKGLILP 277
>3qtc_A Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP B
O-methyl tyrosine binding, magnesium binding,
aminoacylatio esterification; HET: 0A1 ANP; 1.75A
{Methanosarcina mazei} PDB: 2q7e_A* 2q7g_A* 2q7h_A*
2zim_A* 2zin_A* 2e3c_A* 2zcd_A* 2zce_A* 2zio_A*
Length = 290
Score = 34.5 bits (79), Expect = 0.15
Identities = 18/113 (15%), Positives = 39/113 (34%), Gaps = 22/113 (19%)
Query: 40 LPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESWKMLDEM 99
PI+ + C+R+E + +F + + + S + + L+ +
Sbjct: 149 DRALPDPIKIFEIGPCYRKESDGKE-------HLEEFTMLVFWQMGS---GCTRENLESI 198
Query: 100 IQNSEEFYADLGIAYRVV----NIVSGALNHAAAKKLDLEAWFPGSGAFRELV 148
I +F LGI +++V + L+ DLE + +
Sbjct: 199 I---TDFLNHLGIDFKIVGDSCMVFGDTLD---VMHGDLE--LSSALVGPIPL 243
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 33.9 bits (77), Expect = 0.17
Identities = 7/38 (18%), Positives = 14/38 (36%), Gaps = 8/38 (21%)
Query: 631 LVCCVCLGERSDDV------NEIVECDSCGVTVHEVKI 662
L C C + ++V C CG+ + + +
Sbjct: 22 LTCPEC-KVYPPKIVERFSEGDVV-CALCGLVLSDKLV 57
Score = 30.8 bits (69), Expect = 1.7
Identities = 14/83 (16%), Positives = 27/83 (32%), Gaps = 40/83 (48%)
Query: 638 GERSDDVNEIVECDSCGVTVHEVKIQQEFLAIKFLIRYLLFWFQLEDFSKFSKILVCCVC 697
G R ++N ++ C C V ++ +E FS+
Sbjct: 12 GRRGPNLNIVLTCPECKVYPPKI---------------------VERFSE---------- 40
Query: 698 LGERSDDVNEIVECDSCGVTVHE 720
G ++V C CG+ + +
Sbjct: 41 -G-------DVV-CALCGLVLSD 54
>3kv5_D JMJC domain-containing histone demethylation protein 1D;
epigenetics, histone CODE, jumonji lysine demethylase,
metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo
sapiens} PDB: 3kv6_A*
Length = 488
Score = 33.9 bits (76), Expect = 0.31
Identities = 17/119 (14%), Positives = 36/119 (30%), Gaps = 3/119 (2%)
Query: 693 VCCVCLGERSDDVNE-IVECDSCGVTVHEGCYGVQDTASISSTVSSCSTEPWFCESCRAG 751
V CVC + DVN ++ECD C H C GV++ ++ + C S
Sbjct: 38 VYCVC--RQPYDVNRFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCPNCAVLHGSSLMK 95
Query: 752 IAEPTCELCPNFGENHLRGLFENIKNGHAQRDRMRYHACHLRDSRDSSDGDRGGIFKET 810
++ + + + + + + + ++
Sbjct: 96 KRRNWHRHDYTEIDDGSKPVQAGTRTFIKELRSRVFPSADEIIIKMHGSQLTQRYLEKH 154
Score = 32.7 bits (73), Expect = 0.67
Identities = 8/30 (26%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 1040 CGLCHLSHDPH-TMAKCDTCHLYYHLACLD 1068
+C +D + M +CD C ++H +C+
Sbjct: 39 YCVCRQPYDVNRFMIECDICKDWFHGSCVG 68
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone
modifications, jumonji demethylase, mental retardation,
metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo
sapiens}
Length = 447
Score = 32.6 bits (73), Expect = 0.68
Identities = 10/29 (34%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Query: 1040 CGLCHLSHDPH-TMAKCDTCHLYYHLACL 1067
LC L +D M +CD C ++H +C+
Sbjct: 7 YCLCRLPYDVTRFMIECDMCQDWFHGSCV 35
Score = 29.5 bits (65), Expect = 6.5
Identities = 19/100 (19%), Positives = 32/100 (32%), Gaps = 10/100 (10%)
Query: 693 VCCVCLGERSDDVNE-IVECDSCGVTVHEGCYGVQDTASISSTVSSCSTEPWFCESCRAG 751
V C+C DV ++ECD C H C GV++ + + + C +C
Sbjct: 6 VYCLC--RLPYDVTRFMIECDMCQDWFHGSCVGVEEEKAA-------DIDLYHCPNCEVL 56
Query: 752 IAEPTCELCPNFGENHLRGLFENIKNGHAQRDRMRYHACH 791
+ + H + +K G R
Sbjct: 57 HGPSIMKKRRGSSKGHDTHKGKPVKTGSPTFVRELRSRTF 96
>3pur_A Lysine-specific demethylase 7 homolog;
oxidoreductase-oxidoreductase inhibitor complex; HET:
2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A*
3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A*
Length = 528
Score = 32.8 bits (73), Expect = 0.70
Identities = 13/77 (16%), Positives = 18/77 (23%), Gaps = 12/77 (15%)
Query: 693 VCCVCLGERSDDVNEIVECDSCGVTVHEGCYGV--QDTASISSTVSSCSTEPWFCESCRA 750
+ +D I CDSC H C G+ + E +FC C
Sbjct: 44 SKKKSHHHKKNDFQWI-GCDSCQTWYHFLCSGLEQFEYYLY---------EKFFCPKCVP 93
Query: 751 GIAEPTCELCPNFGENH 767
Sbjct: 94 HTGHSIRYKVVAPHRYR 110
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 31.7 bits (71), Expect = 0.88
Identities = 9/41 (21%), Positives = 18/41 (43%), Gaps = 5/41 (12%)
Query: 472 DEEETKKQKKQKEGMKKKVLIDE-AMIQNEKDLIATEKERN 511
D +++ +E KK ++E Q+E+ + K N
Sbjct: 102 DAASKVMEQEWREKAKKD--LEEWNQRQSEQ--VEKNKINN 138
Score = 30.1 bits (67), Expect = 2.9
Identities = 13/78 (16%), Positives = 20/78 (25%), Gaps = 29/78 (37%)
Query: 226 DEEETKKQKKQKEGMKKKLTMSLFSQVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESW 285
D +++ +E KK L + Q E+VE
Sbjct: 102 DAASKVMEQEWREKAKKDLEE----------------WNQRQSEQVE------------- 132
Query: 286 KMLDEMIQNSEEFYADLD 303
K + FY D
Sbjct: 133 KNKINNRIADKAFYQQPD 150
Score = 29.0 bits (64), Expect = 5.6
Identities = 20/131 (15%), Positives = 32/131 (24%), Gaps = 60/131 (45%)
Query: 220 VKTAPIDEEETKKQKKQKEGMKKKLTMSLFSQVGSHGRDTRGIFRVHQFEKVEQFVLTSP 279
+ A +E + +K +E +K+L E
Sbjct: 74 IAQADRLTQEPESIRKWREEQRKRLQ-----------------------EL--------- 101
Query: 280 HDDESWKMLDEMI----QNSEEFYADLDTRGIFRVHQFEKVEQFVLTSPHDDESWKTLDE 335
D S M E ++ EE+ Q E+VE K
Sbjct: 102 -DAASKVMEQEWREKAKKDLEEWNQ----------RQSEQVE-------------KNKIN 137
Query: 336 MIQNSEEFYAD 346
+ FY
Sbjct: 138 NRIADKAFYQQ 148
Score = 29.0 bits (64), Expect = 7.2
Identities = 11/62 (17%), Positives = 22/62 (35%), Gaps = 12/62 (19%)
Query: 474 EETKK--QKKQKEGMKKKVLIDEAMIQNEKDLIATEKERNNALREVIGKGEKVGDSAPEK 531
EE +K Q+ + E + +KDL + ++ + EK +
Sbjct: 92 EEQRKRLQELDAASKVME---QEWREKAKKDLEEWNQRQSEQV-------EKNKINNRIA 141
Query: 532 DE 533
D+
Sbjct: 142 DK 143
Score = 28.6 bits (63), Expect = 9.2
Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 473 EEETKKQKKQKEGMKKKVLI-DEAMIQN-EKDLI 504
EE ++Q +Q E K I D+A Q + D+I
Sbjct: 121 EEWNQRQSEQVEKNKINNRIADKAFYQQPDADII 154
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.7 bits (68), Expect = 1.2
Identities = 9/37 (24%), Positives = 14/37 (37%), Gaps = 12/37 (32%)
Query: 998 ENDSLQSEQSRLQKTYDELVYMEVVFPQ--PPLSKQA 1032
E +L+ Q+ L K Y P L+ +A
Sbjct: 18 EKQALKKLQASL-KLYA---------DDSAPALAIKA 44
Score = 30.3 bits (67), Expect = 2.0
Identities = 10/33 (30%), Positives = 15/33 (45%), Gaps = 6/33 (18%)
Query: 157 QS-RRLLVRYGQTKQKIYATACATTRVICAILE 188
Q+ ++L Q K+YA A I A +E
Sbjct: 20 QALKKL-----QASLKLYADDSAPALAIKATME 47
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex,
response regulator, receiver domain, two-component
signal transduction; HET: BFD; 1.96A {Borrelia
burgdorferi}
Length = 157
Score = 30.2 bits (68), Expect = 1.8
Identities = 7/35 (20%), Positives = 9/35 (25%), Gaps = 2/35 (5%)
Query: 465 FVKTAPIDEEETKKQKKQKEGMKKKVLI--DEAMI 497
T D + G+ VLI D
Sbjct: 14 QKTTIAADSSSKPRGINYDTGIPFNVLIVDDSVFT 48
>3iz5_e 60S ribosomal protein L7 (L30P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_e
Length = 244
Score = 30.3 bits (69), Expect = 2.2
Identities = 5/52 (9%), Positives = 16/52 (30%), Gaps = 2/52 (3%)
Query: 463 IPFVKTAPIDEEETKKQKKQKEGMKKKVLIDEAM--IQNEKDLIATEKERNN 512
+ V+ K ++ + +++ + N K + + N
Sbjct: 129 LRRVEPYVTYGYPNLKSVRELIYKRGYGKLNKQRIPLANNKVIEEGLGKHNI 180
>3ikl_A DNA polymerase subunit gamma-2, mitochondrial; transferase; HET:
DNA; 3.10A {Homo sapiens}
Length = 459
Score = 30.9 bits (69), Expect = 2.3
Identities = 16/120 (13%), Positives = 38/120 (31%), Gaps = 12/120 (10%)
Query: 44 SLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESWKMLDEMIQNS 103
LP + CF + + G+ + + + T P W LD +++
Sbjct: 171 RLPYGLAQIGVCFHPVFDT-KQIRNGVKSIGEKTEASLVWFTPPRTSNQW--LDFWLRHR 227
Query: 104 EEFYADLGIA---YRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQSRR 160
+++ ++ + + + K L FP + + N D++
Sbjct: 228 LQWWRKFAMSPSNFSSSDC----QDEEGRKGNKLYYNFPWG--KELIETLWNLGDHELLH 281
>2k3v_A Tetraheme cytochrome C-type; multihaem cytochromes, redox proteins,
electron transport, iron, metal-binding, periplasm,
transport; HET: HEM; NMR {Shewanella frigidimarina}
Length = 86
Score = 29.0 bits (64), Expect = 2.3
Identities = 10/22 (45%), Positives = 11/22 (50%), Gaps = 2/22 (9%)
Query: 1040 CGLCHLSHDPHTMAK--CDTCH 1059
C CH H+ K CDTCH
Sbjct: 58 CADCHAPHEAKVGEKPTCDTCH 79
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger,
alpha-helical bundle, dimethyl-lysine, bromodom
chromatin regulator, metal-binding, nucleus; HET: MLY;
1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A*
3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Length = 174
Score = 29.8 bits (67), Expect = 2.6
Identities = 12/66 (18%), Positives = 23/66 (34%), Gaps = 8/66 (12%)
Query: 693 VCCVCLGERSDDVNEIVECDSCGVTVHEGCYGVQDTASISSTVSSCSTEPWFCESCRAGI 752
+ C+C D+ + CD C H C G+ + + + + C C++
Sbjct: 9 LYCICK-TPEDESKFYIGCDRCQNWYHGRCVGILQSEAELI-------DEYVCPQCQSTE 60
Query: 753 AEPTCE 758
T
Sbjct: 61 DAMTVL 66
Score = 29.8 bits (67), Expect = 3.2
Identities = 7/42 (16%), Positives = 12/42 (28%)
Query: 1040 CGLCHLSHDPHTMAKCDTCHLYYHLACLDPPLLRMPKKTKLM 1081
C + CD C +YH C+ + +
Sbjct: 11 CICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYV 52
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB
protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus}
SCOP: g.50.1.1
Length = 134
Score = 29.1 bits (64), Expect = 3.3
Identities = 11/56 (19%), Positives = 18/56 (32%), Gaps = 8/56 (14%)
Query: 694 CCVCLGERSDDVNEIVECDSCGVTVHEGCYGVQDTASISSTVSSCSTEPWFCESCR 749
C +C + + V C+ C V C T ++ W C+ C
Sbjct: 58 CILCGEQLGMLGSASVVCEDCKKNVCTKCG--------VETSNNRPHPVWLCKICL 105
>1m1q_A Small tetraheme cytochrome C; atomic structure of oxidized tetraheme
cytochrome C, electron transport; HET: HEM; 0.97A
{Shewanella oneidensis mr-1} SCOP: a.138.1.3 PDB: 1m1p_A*
1m1r_A*
Length = 91
Score = 28.2 bits (62), Expect = 3.6
Identities = 9/22 (40%), Positives = 12/22 (54%), Gaps = 2/22 (9%)
Query: 1040 CGLCHLSHDPHTMAK--CDTCH 1059
C CH HD + K C++CH
Sbjct: 58 CADCHAVHDMNVGQKPTCESCH 79
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ,
heterodimer, transcription/DNA complex; 1.80A {Homo
sapiens} SCOP: a.38.1.1
Length = 88
Score = 27.3 bits (61), Expect = 8.7
Identities = 7/30 (23%), Positives = 16/30 (53%)
Query: 987 KLTREQRALAVENDSLQSEQSRLQKTYDEL 1016
+ E++ L E D L+ + +L+ ++L
Sbjct: 56 SVQAEEQKLISEEDLLRKRREQLKHKLEQL 85
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila
melanogaster}
Length = 381
Score = 29.1 bits (64), Expect = 9.2
Identities = 14/72 (19%), Positives = 25/72 (34%), Gaps = 4/72 (5%)
Query: 694 CCVCLGERSDD-VNEIVECD--SCGVTVHEGCYGVQDTASISSTVSSCSTEPWFCESCRA 750
C +C R D +V CD C + H C + ++ + C C+A
Sbjct: 311 CNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCL-EEWFKTLMDGKTFLEVSFGQCPFCKA 369
Query: 751 GIAEPTCELCPN 762
++ L +
Sbjct: 370 KLSTSFAALLND 381
>1g5h_A Mitochondrial DNA polymerase accessory subunit; intermolecular four
helix bundle, DNA binding protein; 1.95A {Mus musculus}
SCOP: c.51.1.1 d.104.1.1 PDB: 1g5i_A 2g4c_A* 3ikm_B*
Length = 454
Score = 28.9 bits (64), Expect = 9.9
Identities = 17/116 (14%), Positives = 36/116 (31%), Gaps = 6/116 (5%)
Query: 45 LPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESWKMLDEMIQNSE 104
LP + CF V + + + RV + + T W LD +++
Sbjct: 162 LPFGLAQIGVCFH-PVSNSNQTPSSVTRVGEKTEASLVWFTPTRTSSQW--LDFWLRHRL 218
Query: 105 EFYADLGIAYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQSRR 160
++ ++ + + + K L FP + + N D +
Sbjct: 219 LWWRKFAMSPSNFSS-ADCQDELGRKGSKLYYSFPWG--KEPIETLWNLGDQELLH 271
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.135 0.415
Gapped
Lambda K H
0.267 0.0503 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 16,610,948
Number of extensions: 1022055
Number of successful extensions: 2699
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2580
Number of HSP's successfully gapped: 198
Length of query: 1083
Length of database: 6,701,793
Length adjustment: 104
Effective length of query: 979
Effective length of database: 3,798,009
Effective search space: 3718250811
Effective search space used: 3718250811
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.2 bits)