RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy11602
(1083 letters)
>d1seta2 d.104.1.1 (A:111-421) Seryl-tRNA synthetase (SerRS)
{Thermus thermophilus, strain hb27 [TaxId: 274]}
Length = 311
Score = 142 bits (358), Expect = 8e-38
Identities = 77/214 (35%), Positives = 116/214 (54%), Gaps = 7/214 (3%)
Query: 9 GDSAPEKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTR 68
D YL T+E + A+H LP +LP+RY G + FR E GS G+D R
Sbjct: 98 YRDQVWAIAETDLYLTGTAEVVLNALHSGEILPYEALPLRYAGYAPAFRSEAGSFGKDVR 157
Query: 69 GIFRVHQFEKVEQFVLTSPHDDESWKMLDEMIQNSEEFYADLGIAYRVVNIVSGALNHAA 128
G+ RVHQF KVEQ+VLT + S + E+++N+EE L + YR+V + +G +
Sbjct: 158 GLMRVHQFHKVEQYVLTEASLEASDRAFQELLENAEEILRLLELPYRLVEVATGDMGPGK 217
Query: 129 AKKLDLEAWFPGSGAFRELVSCSNCLDYQSRRLLVRYGQTKQK------IYATACATTRV 182
+++D+E + P G +RE SCS LD+Q+RR +RY + + + TA AT R+
Sbjct: 218 WRQVDIEVYLPSEGRYRETHSCSALLDWQARRANLRYRDPEGRVRYAYTLNNTALATPRI 277
Query: 183 ICAILETHQTETG-VRIPDCLRKFVPAVYLNEAG 215
+ +LE HQ + G VR+P L ++ L G
Sbjct: 278 LAMLLENHQLQDGRVRVPQALIPYMGKEVLEPCG 311
Score = 126 bits (317), Expect = 2e-32
Identities = 56/150 (37%), Positives = 89/150 (59%), Gaps = 4/150 (2%)
Query: 303 DTRGIFRVHQFEKVEQFVLTSPHDDESWKTLDEMIQNSEEFYADLGIAYRVVNIVSGALN 362
D RG+ RVHQF KVEQ+VLT + S + E+++N+EE L + YR+V + +G +
Sbjct: 155 DVRGLMRVHQFHKVEQYVLTEASLEASDRAFQELLENAEEILRLLELPYRLVEVATGDMG 214
Query: 363 HAAAKKLDLEAWFPGSGAFRELVSCSNCLAYQSRRLLVRYGQTKKMNEKIEFVHMLNATA 422
+++D+E + P G +RE SCS L +Q+RR +RY + ++ + + LN TA
Sbjct: 215 PGKWRQVDIEVYLPSEGRYRETHSCSALLDWQARRANLRY---RDPEGRVRYAYTLNNTA 271
Query: 423 CATTRVICAILETHQTETG-VRIPDCLRKF 451
AT R++ +LE HQ + G VR+P L +
Sbjct: 272 LATPRILAMLLENHQLQDGRVRVPQALIPY 301
>d1g5ha2 d.104.1.1 (A:41-330) The aaRS-like accessory subunit of
mitochondrial polymerase gamma, N-terminal domain {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 290
Score = 79.0 bits (194), Expect = 2e-16
Identities = 19/180 (10%), Positives = 44/180 (24%), Gaps = 17/180 (9%)
Query: 22 YLIATSEQPICAVHRDSW-LPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVE 80
L AT + + L LP + CF + + + RV + +
Sbjct: 114 KLRATLLHGALEHYVNCLDLVNRKLPFGLAQIGVCFHPVS-NSNQTPSSVTRVGEKTEAS 172
Query: 81 QFVLTSPHDDESWKMLDEMIQNSEEFYADLGIAYRVVNIVSGALNHAAAKKLDLEAWFPG 140
T W D +++ ++ ++ + + + ++
Sbjct: 173 LVWFTPTRTSSQWL--DFWLRHRLLWWRKFAMSPSNFSSADCQDELG---RKGSKLYYSF 227
Query: 141 SGAFRELVSCSNCLDYQSRRLLVRYGQT-----KQKIYA-----TACATTRVICAILETH 190
+ + N D + T +K + A L
Sbjct: 228 PWGKEPIETLWNLGDQELLHTYPGNVSTIQGRDGRKNVVPCVLSVSGDVDLGTLAYLYDS 287
Score = 70.5 bits (172), Expect = 1e-13
Identities = 10/136 (7%), Positives = 34/136 (25%), Gaps = 6/136 (4%)
Query: 302 LDTRGIFRVHQFEKVEQFVLTSPHDDESWKTLDEMIQNSEEFYADLGIAYRVVNIVSGAL 361
+ RV + + T W D +++ ++ ++ +
Sbjct: 157 QTPSSVTRVGEKTEASLVWFTPTRTSSQWL--DFWLRHRLLWWRKFAMSPSNFSSADCQD 214
Query: 362 NHAAAKKLDLEAWFPGSGAFRELVSCSNCLAYQSRRLLVRYGQTKKMNE-KIEFVHMLNA 420
+ + ++ + + N + T + + + V + +
Sbjct: 215 ELG---RKGSKLYYSFPWGKEPIETLWNLGDQELLHTYPGNVSTIQGRDGRKNVVPCVLS 271
Query: 421 TACATTRVICAILETH 436
+ A L
Sbjct: 272 VSGDVDLGTLAYLYDS 287
>d1nj1a3 d.104.1.1 (A:19-283) Prolyl-tRNA synthetase (ProRS)
{Arhaeon (Methanothermobacter thermautotrophicus)
[TaxId: 145262]}
Length = 265
Score = 74.9 bits (183), Expect = 3e-15
Identities = 31/176 (17%), Positives = 64/176 (36%), Gaps = 9/176 (5%)
Query: 22 YLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQ 81
L TSE + + LP+R+ V FR E + TR + RV + ++
Sbjct: 95 ALRPTSETVMYPMFALWVRSHTDLPMRFYQVVNTFRYE----TKHTRPLIRVREITTFKE 150
Query: 82 FVLTSPHDDESWKMLDEMIQNSEEFYADLGIAYRVVNIVSGALNHAAAKKLDLEAWFPGS 141
E+ + ++ ++ +EF+ LGI Y + + + + P
Sbjct: 151 AHTIHATASEAEEQVERAVEIYKEFFNSLGIPYLITRRPPWDKFPGSEYTVAFDTLMPDG 210
Query: 142 GAFRELVSCSNCLDYQSRRLLVRY----GQTKQKIYATACATTRVICAILETHQTE 193
++ + N +R +++ G + + RVI +++ H E
Sbjct: 211 K-TLQIGTVHNLGQTFARTFEIKFETPEGDHEYVHQTCYGLSDRVIASVIAIHGDE 265
Score = 64.1 bits (155), Expect = 1e-11
Identities = 22/137 (16%), Positives = 51/137 (37%), Gaps = 6/137 (4%)
Query: 303 DTRGIFRVHQFEKVEQFVLTSPHDDESWKTLDEMIQNSEEFYADLGIAYRVVNIVSGALN 362
TR + RV + ++ E+ + ++ ++ +EF+ LGI Y +
Sbjct: 135 HTRPLIRVREITTFKEAHTIHATASEAEEQVERAVEIYKEFFNSLGIPYLITRRPPWDKF 194
Query: 363 HAAAKKLDLEAWFPGSGAFRELVSCSNCLAYQSRRLLVRYGQTKKMNEKIEFVHMLNATA 422
+ + + P ++ + N +R +++ + E+VH
Sbjct: 195 PGSEYTVAFDTLMPDGK-TLQIGTVHNLGQTFARTFEIKF---ETPEGDHEYVHQ--TCY 248
Query: 423 CATTRVICAILETHQTE 439
+ RVI +++ H E
Sbjct: 249 GLSDRVIASVIAIHGDE 265
>d1nj8a3 d.104.1.1 (A:0-267) Prolyl-tRNA synthetase (ProRS)
{Archaeon (Methanocaldococcus jannaschii) [TaxId: 2190]}
Length = 268
Score = 66.4 bits (161), Expect = 2e-12
Identities = 36/185 (19%), Positives = 65/185 (35%), Gaps = 9/185 (4%)
Query: 13 PEKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFR 72
+ L TSE PI + + LPI+ + FR E + TR + R
Sbjct: 89 GKTQLDVKLALRPTSETPIYYMMKLWVKVHTDLPIKIYQIVNTFRYE----TKHTRPLIR 144
Query: 73 VHQFEKVEQFVLTSPHDDESWKMLDEMIQNSEEFYADLGIAYRVVNIVSGALNHAAAKKL 132
+ + ++ +E+ + E I ++F+ LGI Y + A +
Sbjct: 145 LREIMTFKEAHTAHSTKEEAENQVKEAISIYKKFFDTLGIPYLISKRPEWDKFPGAEYTM 204
Query: 133 DLEAWFPGSGAFRELVSCSNCLDYQSRRLLVRY----GQTKQKIYATACATTRVICAILE 188
+ FP G ++ + N S+ + + G + RVI +I+
Sbjct: 205 AFDTIFP-DGRTMQIATVHNLGQNFSKTFEIIFETPTGDKDYAYQTCYGISDRVIASIIA 263
Query: 189 THQTE 193
H E
Sbjct: 264 IHGDE 268
Score = 59.9 bits (144), Expect = 3e-10
Identities = 29/228 (12%), Positives = 67/228 (29%), Gaps = 22/228 (9%)
Query: 228 EETKKQKKQKEGMKKKLTMSLFSQVGSH--------GRDTRGIFRVHQFEKVEQFVLTSP 279
+ + + L ++ H T G + + +P
Sbjct: 47 NLLDESGHDEALFPMLIPEDLLAKEAEHIKGFEDEVYWVTHGGKTQLDVKLALRPTSETP 106
Query: 280 HDDESWKMLDEMIQNSEEFYADL--------DTRGIFRVHQFEKVEQFVLTSPHDDESWK 331
+ + Y + TR + R+ + ++ +E+
Sbjct: 107 IYYMMKLWVKVHTDLPIKIYQIVNTFRYETKHTRPLIRLREIMTFKEAHTAHSTKEEAEN 166
Query: 332 TLDEMIQNSEEFYADLGIAYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCL 391
+ E I ++F+ LGI Y + A + + FP G ++ + N
Sbjct: 167 QVKEAISIYKKFFDTLGIPYLISKRPEWDKFPGAEYTMAFDTIFP-DGRTMQIATVHNLG 225
Query: 392 AYQSRRLLVRYGQTKKMNEKIEFVHMLNATACATTRVICAILETHQTE 439
S+ + + + ++ + + RVI +I+ H E
Sbjct: 226 QNFSKTFEIIF---ETPTGDKDYAYQ--TCYGISDRVIASIIAIHGDE 268
>d1hc7a2 d.104.1.1 (A:5-276) Prolyl-tRNA synthetase (ProRS) {Thermus
thermophilus [TaxId: 274]}
Length = 272
Score = 64.9 bits (157), Expect = 7e-12
Identities = 21/176 (11%), Positives = 45/176 (25%), Gaps = 10/176 (5%)
Query: 19 DDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEK 78
+ + TSE I + LP R E+ + F +
Sbjct: 100 EPLAVRPTSETVIGYMWSKWIRSWRDLPQLLNQWGNVVRWEMRTRPFLRTSEFLWQEGHT 159
Query: 79 VEQFVLTSPHDDESWKMLDEMIQNSEEFYADLGIAYRVVNIVSGALNHAAAKKLDLEAWF 138
+ + + + + + + A A
Sbjct: 160 AHATREEAEEEVRRMLSIYA------RLAREYAAIPVIEGLKTEKEKFAGAVYTTTIEAL 213
Query: 139 PGSGAFRELVSCSNCLDYQSRRLLVRY-GQTKQKIY---ATACATTRVICAILETH 190
G + + + +R +++ + Q Y + + R I AI+ TH
Sbjct: 214 MKDGKALQAGTSHYLGENFARAFDIKFQDRDLQVKYVHTTSWGLSWRFIGAIIMTH 269
Score = 59.9 bits (144), Expect = 3e-10
Identities = 26/243 (10%), Positives = 65/243 (26%), Gaps = 13/243 (5%)
Query: 195 GVRIPDCLRKFVPAVYLNEAGEIPFVKTAPIDEEETKKQKKQKEGMKKKLTMSLFSQVGS 254
G I + +++ + ++ E G I +K+ + EG +L + +
Sbjct: 39 GYAIWENIQQVLDRMF-KETGHQNAYFPLFIPMSFLRKEAEHVEGFSPELAVVTHAGGEE 97
Query: 255 HGRDTRGIFRVHQFEKVEQFVLTSPHDDESWKMLDEMIQNSEEF-YADLDTRGIFRVHQF 313
D + E F +
Sbjct: 98 LEEPLAVRPTSETVIGYMWSKWIRSWRDLPQLLNQWGNVVRWEMRTRPFLRTSEFLWQEG 157
Query: 314 EKVEQFVLTSPHDDESWKTLDEMIQNSEEFYADLGIAYRVVNIVSGALNHAAAKKLDLEA 373
+E+ + + M+ + + + + A A
Sbjct: 158 HTAHA------TREEAEEEVRRMLSIYARLAREYAAIPVIEGLKTEKEKFAGAVYTTTIE 211
Query: 374 WFPGSGAFRELVSCSNCLAYQSRRLLVRYGQTKKMNEKIEFVHMLNATACATTRVICAIL 433
G + + +R +++ + + ++++VH + + R I AI+
Sbjct: 212 ALMKDGKALQAGTSHYLGENFARAFDIKF---QDRDLQVKYVHT--TSWGLSWRFIGAII 266
Query: 434 ETH 436
TH
Sbjct: 267 MTH 269
>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor,
WSTF {Human (Homo sapiens) [TaxId: 9606]}
Length = 51
Score = 48.0 bits (114), Expect = 5e-08
Identities = 12/38 (31%), Positives = 19/38 (50%)
Query: 1039 KCGLCHLSHDPHTMAKCDTCHLYYHLACLDPPLLRMPK 1076
+C +C + + CD C+ +HL CL P L +P
Sbjct: 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPD 39
Score = 36.9 bits (85), Expect = 6e-04
Identities = 11/56 (19%), Positives = 20/56 (35%), Gaps = 10/56 (17%)
Query: 694 CCVCLGERSDDVNEIVECDSCGVTVHEGCYGVQDTASISSTVSSCSTEPWFCESCR 749
C VC + + ++++ CD C H C + W C +C+
Sbjct: 3 CKVC--RKKGEDDKLILCDECNKAFHLFCLRPA--------LYEVPDGEWQCPACQ 48
Score = 26.5 bits (58), Expect = 2.6
Identities = 7/26 (26%), Positives = 13/26 (50%), Gaps = 2/26 (7%)
Query: 633 CCVCLGERSDDVNEIVECDSCGVTVH 658
C VC + + ++++ CD C H
Sbjct: 3 CKVC--RKKGEDDKLILCDECNKAFH 26
>d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 88
Score = 47.5 bits (112), Expect = 2e-07
Identities = 14/58 (24%), Positives = 22/58 (37%), Gaps = 4/58 (6%)
Query: 692 LVCCVCLGERSDDVNEIVECDSCGVTVHEGCYGVQDTASISSTVSSCSTEPWFCESCR 749
L C VC N++VEC C H+ C+ ++ + W+C C
Sbjct: 17 LACVVCRQMTVASGNQLVECQECHNLYHQDCHKP----QVTDKEVNDPRLVWYCARCT 70
Score = 41.0 bits (95), Expect = 4e-05
Identities = 10/50 (20%), Positives = 17/50 (34%), Gaps = 2/50 (4%)
Query: 1036 LSHKCGLCHLSHDP--HTMAKCDTCHLYYHLACLDPPLLRMPKKTKLMGW 1083
+ C +C + + +C CH YH C P + + W
Sbjct: 15 MGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVW 64
Score = 36.4 bits (83), Expect = 0.002
Identities = 10/28 (35%), Positives = 12/28 (42%)
Query: 631 LVCCVCLGERSDDVNEIVECDSCGVTVH 658
L C VC N++VEC C H
Sbjct: 17 LACVVCRQMTVASGNQLVECQECHNLYH 44
>d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 70
Score = 46.9 bits (111), Expect = 2e-07
Identities = 12/43 (27%), Positives = 18/43 (41%)
Query: 1034 GVLSHKCGLCHLSHDPHTMAKCDTCHLYYHLACLDPPLLRMPK 1076
G L +C + P + C+ C +HL C P L +P
Sbjct: 1 GTLDDSATICRVCQKPGDLVMCNQCEFCFHLDCHLPALQDVPG 43
Score = 35.4 bits (81), Expect = 0.003
Identities = 12/58 (20%), Positives = 18/58 (31%), Gaps = 13/58 (22%)
Query: 693 VCCVCLGERSDDVNEIVECDSCGVTVHEGCYGVQDTASISSTVSSCSTEPWFCESCRA 750
+C VC ++V C+ C H C+ + E W C C
Sbjct: 9 ICRVC-----QKPGDLVMCNQCEFCFHLDCHLP--------ALQDVPGEEWSCSLCHV 53
>d1weea_ g.50.1.2 (A:) PHD finger protein At1g33420 {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 72
Score = 43.9 bits (103), Expect = 3e-06
Identities = 16/58 (27%), Positives = 24/58 (41%), Gaps = 9/58 (15%)
Query: 693 VCCVCLGERSDDVNEIVECDSCGVTVHEGCYGVQDTASISSTVSSCSTEPWFCESCRA 750
V C C G + DD ++ CD CGV H C G+ + ++ + C C
Sbjct: 17 VDCKC-GTKDDDGERMLACDGCGVWHHTRCIGINNADALP--------SKFLCFRCIE 65
Score = 35.0 bits (80), Expect = 0.003
Identities = 9/37 (24%), Positives = 13/37 (35%), Gaps = 2/37 (5%)
Query: 1040 CGLCHLSHDPHTMAKCDTCHLYYHLACLDPPLLRMPK 1076
CG D M CD C +++H C+
Sbjct: 21 CGTKD--DDGERMLACDGCGVWHHTRCIGINNADALP 55
Score = 30.8 bits (69), Expect = 0.12
Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 632 VCCVCLGERSDDVNEIVECDSCGVTVH 658
V C C G + DD ++ CD CGV H
Sbjct: 17 VDCKC-GTKDDDGERMLACDGCGVWHH 42
>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 64
Score = 42.3 bits (99), Expect = 7e-06
Identities = 12/56 (21%), Positives = 18/56 (32%), Gaps = 8/56 (14%)
Query: 694 CCVCLGERSDDVNEIVECDSCGVTVHEGCYGVQDTASISSTVSSCSTEPWFCESCR 749
C C GE + CD C + H C + + + + C SC
Sbjct: 9 CGAC-GESYAADEFWICCDLCEMWFHGKCVKITPARAEHI-------KQYKCPSCS 56
Score = 41.6 bits (97), Expect = 1e-05
Identities = 11/44 (25%), Positives = 18/44 (40%), Gaps = 1/44 (2%)
Query: 1037 SHKCGLCHLSHDP-HTMAKCDTCHLYYHLACLDPPLLRMPKKTK 1079
S +CG C S+ CD C +++H C+ R +
Sbjct: 6 SGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQ 49
Score = 29.6 bits (66), Expect = 0.28
Identities = 8/26 (30%), Positives = 10/26 (38%), Gaps = 1/26 (3%)
Query: 633 CCVCLGERSDDVNEIVECDSCGVTVH 658
C C GE + CD C + H
Sbjct: 9 CGAC-GESYAADEFWICCDLCEMWFH 33
>d1wema_ g.50.1.2 (A:) Death associated transcription factor 1,
Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]}
Length = 76
Score = 42.8 bits (100), Expect = 7e-06
Identities = 11/58 (18%), Positives = 22/58 (37%), Gaps = 5/58 (8%)
Query: 693 VCCVCLGERSDDVNEIVECDSCGVTVHEGCYGVQDTASISSTVSSCSTEPWFCESCRA 750
+ C+C + + ++ CD C H C G+ + + E + C +C
Sbjct: 17 LYCIC--RQPHNNRFMICCDRCEEWFHGDCVGISEARGRLLERNG---EDYICPNCTI 69
Score = 33.1 bits (75), Expect = 0.018
Identities = 9/38 (23%), Positives = 15/38 (39%)
Query: 1042 LCHLSHDPHTMAKCDTCHLYYHLACLDPPLLRMPKKTK 1079
+C H+ M CD C ++H C+ R +
Sbjct: 20 ICRQPHNNRFMICCDRCEEWFHGDCVGISEARGRLLER 57
Score = 28.1 bits (62), Expect = 1.1
Identities = 6/27 (22%), Positives = 12/27 (44%), Gaps = 2/27 (7%)
Query: 632 VCCVCLGERSDDVNEIVECDSCGVTVH 658
+ C+C + + ++ CD C H
Sbjct: 17 LYCIC--RQPHNNRFMICCDRCEEWFH 41
>d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId:
9606]}
Length = 61
Score = 38.8 bits (90), Expect = 1e-04
Identities = 15/39 (38%), Positives = 20/39 (51%)
Query: 1038 HKCGLCHLSHDPHTMAKCDTCHLYYHLACLDPPLLRMPK 1076
H C + D + CDTC YH+ CL+PPL +P
Sbjct: 7 HHMEFCRVCKDGGELLCCDTCPSSYHIHCLNPPLPEIPN 45
Score = 35.7 bits (82), Expect = 0.002
Identities = 13/58 (22%), Positives = 18/58 (31%), Gaps = 13/58 (22%)
Query: 693 VCCVCLGERSDDVNEIVECDSCGVTVHEGCYGVQDTASISSTVSSCSTEPWFCESCRA 750
C VC D E++ CD+C + H C + W C C
Sbjct: 11 FCRVC-----KDGGELLCCDTCPSSYHIHCLNPP--------LPEIPNGEWLCPRCTC 55
>d1wewa_ g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 78
Score = 38.2 bits (88), Expect = 3e-04
Identities = 17/58 (29%), Positives = 21/58 (36%), Gaps = 3/58 (5%)
Query: 693 VCCVCLGERSDDVNEIVECDSCGVTVHEGCYGVQDTASISSTVSSCSTEPWFCESCRA 750
V CVC D E C V H GC + D + E ++CE CR
Sbjct: 17 VRCVCGNSLETDSMIQCEDPRCHVWQHVGCVILPD---KPMDGNPPLPESFYCEICRL 71
>d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 79
Score = 38.1 bits (88), Expect = 4e-04
Identities = 13/65 (20%), Positives = 28/65 (43%), Gaps = 8/65 (12%)
Query: 686 SKFSKILVCCVCLGERSDDVNEIVECDSCGVTVHEGCYGVQDTASISSTVSSCSTEPWFC 745
S + + V C+C + + + ++EC C H C G+++ ++ + + C
Sbjct: 6 SGMALVPVYCLC-RQPYNVNHFMIECGLCQDWFHGSCVGIEEENAV-------DIDIYHC 57
Query: 746 ESCRA 750
C A
Sbjct: 58 PDCEA 62
Score = 30.8 bits (69), Expect = 0.13
Identities = 7/43 (16%), Positives = 15/43 (34%), Gaps = 1/43 (2%)
Query: 1040 CGLCHLSHDPH-TMAKCDTCHLYYHLACLDPPLLRMPKKTKLM 1081
LC ++ + M +C C ++H +C+
Sbjct: 14 YCLCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYH 56
Score = 27.7 bits (61), Expect = 1.5
Identities = 8/34 (23%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 625 SKFSKILVCCVCLGERSDDVNEIVECDSCGVTVH 658
S + + V C+C + + + ++EC C H
Sbjct: 6 SGMALVPVYCLC-RQPYNVNHFMIECGLCQDWFH 38
>d2pnxa1 g.50.1.2 (A:195-245) Inhibitor of growth protein 4, Ing4
{Homo sapiens [TaxId: 9606]}
Length = 51
Score = 28.0 bits (62), Expect = 0.65
Identities = 10/55 (18%), Positives = 14/55 (25%), Gaps = 10/55 (18%)
Query: 695 CVCLGERSDDVNEIVECDSCGVTVHEGCYGVQDTASISSTVSSCSTEPWFCESCR 749
C+C ++ D H C G+ WFC C
Sbjct: 5 CLCHQVSYGEMIGCDNPDCSIEWFHFACVGLTTK----------PRGKWFCPRCS 49
>d1wesa_ g.50.1.2 (A:) PHD Inhibitor of growth protein 2, Ing2
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 71
Score = 28.8 bits (64), Expect = 0.69
Identities = 8/58 (13%), Positives = 13/58 (22%), Gaps = 10/58 (17%)
Query: 693 VCCVCLGERSDDVNEIVECDSCGVTVHEGCYGVQDTASISSTVSSCSTEPWFCESCRA 750
C+C ++ H C + W+C CR
Sbjct: 17 TYCLCNQVSYGEMIGCDNEQCPIEWFHFSCVSLTYKPK----------GKWYCPKCRG 64
>d1y0pa1 a.138.1.3 (A:1-102) Flavocytochrome c3 (respiratory fumarate
reductase), N-terminal domain {Shewanella frigidimarina
[TaxId: 56812]}
Length = 102
Score = 29.1 bits (64), Expect = 0.87
Identities = 11/50 (22%), Positives = 19/50 (38%), Gaps = 3/50 (6%)
Query: 1010 QKTYDELVYMEVVFPQPPLSKQAWGVLSHKCGLCHLSHDPHTMAKCDTCH 1059
T E+ + G ++ C CH +H+ + CD+CH
Sbjct: 40 HGTLAEVAETTKHEHYNAHASHFPGEVA--CTSCHSAHEKSMVY-CDSCH 86
>d1xa6a3 g.49.1.1 (A:209-270) Beta-chimaerin, middle domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 62
Score = 28.1 bits (62), Expect = 0.94
Identities = 10/35 (28%), Positives = 14/35 (40%)
Query: 688 FSKILVCCVCLGERSDDVNEIVECDSCGVTVHEGC 722
F C C + + V C CG+ VH+ C
Sbjct: 12 FRGPHWCEYCANFMWGLIAQGVRCSDCGLNVHKQC 46
>d1ptqa_ g.49.1.1 (A:) Protein kinase C-delta (PKCdelta) {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 50
Score = 27.7 bits (61), Expect = 0.99
Identities = 9/35 (25%), Positives = 15/35 (42%)
Query: 688 FSKILVCCVCLGERSDDVNEIVECDSCGVTVHEGC 722
+ C C V + ++C+ CG+ VH C
Sbjct: 8 YMSPTFCDHCGSLLWGLVKQGLKCEDCGMNVHHKC 42
>d1tbna_ g.49.1.1 (A:) Protein kinase c-gamma {Rat (Rattus rattus)
[TaxId: 10117]}
Length = 66
Score = 27.3 bits (60), Expect = 1.8
Identities = 9/35 (25%), Positives = 15/35 (42%)
Query: 688 FSKILVCCVCLGERSDDVNEIVECDSCGVTVHEGC 722
+S C C V++ ++C C + VH C
Sbjct: 16 YSSPTFCDHCGSLLYGLVHQGMKCSCCEMNVHRRC 50
>d1uvqa2 d.19.1.1 (A:2-84) Class II MHC alpha chain, N-terminal
domain {Human (Homo sapiens), HLA-DQ6 [TaxId: 9606]}
Length = 83
Score = 27.3 bits (61), Expect = 2.5
Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 291 MIQNSEEFYADLDTR-GIFRVHQFEKVEQF 319
E+FY DL+ + +R +F K F
Sbjct: 27 EFDGDEQFYVDLERKETAWRWPEFSKFGGF 56
>d5csma_ a.130.1.2 (A:) Allosteric chorismate mutase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 256
Score = 28.6 bits (64), Expect = 4.1
Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 5/70 (7%)
Query: 916 TQKLARPLTSSA---TLCRALLHKARLMEVD-TGAVAQAQSDLATLADMNKKWHIPLAFN 971
+ + + +T+SA + L KA + VD T + + L + K+ IP+
Sbjct: 185 VEGIMKNITNSAVEEKILERLTKKAEVYGVDPTERRIERRISPEYLVKIYKEIVIPITKE 244
Query: 972 VEFVAYFLNR 981
VE V Y L R
Sbjct: 245 VE-VEYLLRR 253
>d1x3za1 d.3.1.4 (A:8-327) Peptide:N-glycanase 1, PNG1 {Baker's
yeast(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 320
Score = 28.4 bits (63), Expect = 4.4
Identities = 15/67 (22%), Positives = 27/67 (40%), Gaps = 20/67 (29%)
Query: 671 FLIRYLLFWFQLEDFSKFSKILVCCVCLGERSDDVN-------------------EIVEC 711
+L++ LL +F+ +DF K+ C C S+++ EI +C
Sbjct: 100 YLVKELLRYFK-QDFFKWCNKPDCNHCGQNTSENMTPLGSQGPNGEESKFNCGTVEIYKC 158
Query: 712 DSCGVTV 718
+ CG
Sbjct: 159 NRCGNIT 165
>d1k32a4 c.14.1.2 (A:680-762,A:854-1061) Tricorn protease {Archaeon
Thermoplasma acidophilum [TaxId: 2303]}
Length = 291
Score = 28.2 bits (62), Expect = 4.8
Identities = 11/63 (17%), Positives = 24/63 (38%), Gaps = 5/63 (7%)
Query: 277 TSPHDDESWKMLDEMIQNSEEFYADLDTRGI--FRVHQFEKVEQFVLTSPHDDESWKTLD 334
+S H++ +M DE + + + Y + R+++ K V + +
Sbjct: 1 SSIHEEFL-QMYDEAWKLARDNYWNEAVAKEISERIYE--KYRNLVPLCKTRYDLSNVIV 57
Query: 335 EMI 337
EM
Sbjct: 58 EMQ 60
>d1vqod1 d.77.1.1 (D:10-174) Ribosomal protein L5 {Archaeon
Haloarcula marismortui [TaxId: 2238]}
Length = 165
Score = 27.2 bits (60), Expect = 8.8
Identities = 3/35 (8%), Positives = 12/35 (34%)
Query: 462 EIPFVKTAPIDEEETKKQKKQKEGMKKKVLIDEAM 496
++ P + + + K ++ +A+
Sbjct: 120 DVTVNLVRPGYRVAKRDKASRSIPTKHRLNPADAV 154
>d1st6a3 a.24.9.1 (A:253-371) Vinculin {Chicken (Gallus gallus)
[TaxId: 9031]}
Length = 119
Score = 26.2 bits (58), Expect = 9.0
Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 7/66 (10%)
Query: 472 DEEETKKQKKQKEGMKK-KVLIDEAMIQNEKDLIATEKERNN----ALREVIGKGEKVGD 526
DE+ K E MK+ LID M Q + L + A+R+++ + K G+
Sbjct: 2 DEDAW--ASKDTEAMKRALALIDSKMNQAKGWLRDPNAPPGDAGEQAIRQILDEAGKAGE 59
Query: 527 SAPEKD 532
K+
Sbjct: 60 LCAGKE 65
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.135 0.415
Gapped
Lambda K H
0.267 0.0667 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 4,085,270
Number of extensions: 198913
Number of successful extensions: 661
Number of sequences better than 10.0: 1
Number of HSP's gapped: 635
Number of HSP's successfully gapped: 70
Length of query: 1083
Length of database: 2,407,596
Length adjustment: 95
Effective length of query: 988
Effective length of database: 1,103,246
Effective search space: 1090007048
Effective search space used: 1090007048
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.2 bits)