BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11606
(111 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3N1G|B Chain B, Crystal Structure Of Dhhn Bound To Bocfn3
pdb|3N1G|A Chain A, Crystal Structure Of Dhhn Bound To Bocfn3
pdb|3N1Q|B Chain B, Crystal Structure Of Dhhn Bound To Cdofn3
pdb|3N1Q|A Chain A, Crystal Structure Of Dhhn Bound To Cdofn3
pdb|3N1Q|E Chain E, Crystal Structure Of Dhhn Bound To Cdofn3
Length = 170
Score = 29.3 bits (64), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Query: 59 SIAEMLQKQSIRLDESQEVECHHLKERLHYE---LEILMAYQSKNK 101
++ M +R+ E + + HH ++ LHYE L+I + + +NK
Sbjct: 94 AVMNMWPGVRLRVTEGWDEDGHHAQDSLHYEGRALDITTSDRDRNK 139
>pdb|2WFQ|A Chain A, Crystal Structure Of The N-terminal Signalling Domain Of
Human Dhh Without Calcium
pdb|2WFR|A Chain A, Crystal Structure Of The N-Terminal Signalling Domain Of
Human Dhh With Calcium
Length = 165
Score = 28.9 bits (63), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Query: 59 SIAEMLQKQSIRLDESQEVECHHLKERLHYE---LEILMAYQSKNK 101
++ M +R+ E + + HH ++ LHYE L+I + + +NK
Sbjct: 75 AVMNMWPGVRLRVTEGWDEDGHHAQDSLHYEGRALDITTSDRDRNK 120
>pdb|2WG3|A Chain A, Crystal Structure Of The Complex Between Human Hedgehog-
Interacting Protein Hip And Desert Hedgehog Without
Calcium
pdb|2WG3|B Chain B, Crystal Structure Of The Complex Between Human Hedgehog-
Interacting Protein Hip And Desert Hedgehog Without
Calcium
Length = 164
Score = 28.9 bits (63), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Query: 59 SIAEMLQKQSIRLDESQEVECHHLKERLHYE---LEILMAYQSKNK 101
++ M +R+ E + + HH ++ LHYE L+I + + +NK
Sbjct: 75 AVMNMWPGVRLRVTEGWDEDGHHAQDSLHYEGRALDITTSDRDRNK 120
>pdb|3N1F|A Chain A, Crystal Structure Of Ihhn Bound To Cdofn3
pdb|3N1F|B Chain B, Crystal Structure Of Ihhn Bound To Cdofn3
pdb|3N1M|B Chain B, Crystal Structure Of Ihhn Bound To Bocfn3
pdb|3N1O|A Chain A, Crystal Structure Of Ihhn
pdb|3N1O|B Chain B, Crystal Structure Of Ihhn
pdb|3N1O|C Chain C, Crystal Structure Of Ihhn
pdb|3N1P|B Chain B, Crystal Structure Of Ihhn Bound To Bocfn3
Length = 169
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 5/48 (10%)
Query: 59 SIAEMLQKQSI--RLDESQEVECHHLKERLHYE---LEILMAYQSKNK 101
+I+ M Q + R+ E + + HH +E LHYE ++I + + +NK
Sbjct: 91 AISVMNQWPGVKLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRNK 138
>pdb|3K7H|B Chain B, Crystal Structure Of The E95k Mutant Of The Indian
Hedgehog N-Terminal Signalling Domain
Length = 187
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 5/48 (10%)
Query: 59 SIAEMLQKQSI--RLDESQEVECHHLKERLHYE---LEILMAYQSKNK 101
+I+ M Q + R+ E + + HH +E LHYE ++I + + +NK
Sbjct: 100 AISVMNQWPGVKLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRNK 147
>pdb|3K7G|B Chain B, Crystal Structure Of The Indian Hedgehog N-Terminal
Signalling Domain
Length = 187
Score = 26.9 bits (58), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 5/48 (10%)
Query: 59 SIAEMLQKQSI--RLDESQEVECHHLKERLHYE---LEILMAYQSKNK 101
+I+ M Q + R+ E + + HH +E LHYE ++I + + +NK
Sbjct: 100 AISVMNQWPGVKLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRNK 147
>pdb|3K7J|B Chain B, Crystal Structure Of The D100e Mutant Of The Indian
Hedgehog N- Terminal Signalling Domain
Length = 187
Score = 26.9 bits (58), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 5/48 (10%)
Query: 59 SIAEMLQKQSI--RLDESQEVECHHLKERLHYE---LEILMAYQSKNK 101
+I+ M Q + R+ E + + HH +E LHYE ++I + + +NK
Sbjct: 100 AISVMNQWPGVKLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRNK 147
>pdb|2O98|A Chain A, Structure Of The 14-3-3 H+-Atpase Plant Complex
pdb|2O98|B Chain B, Structure Of The 14-3-3 H+-Atpase Plant Complex
Length = 242
Score = 25.8 bits (55), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 9 ETCKIQTRQYKALKAQMLATASKEDQKTVIKKLKQDQRRKLA 50
E KI K L A+++ +A+ D K K+K D R LA
Sbjct: 98 ELSKICDGILKLLDAKLIPSAASGDSKVFYLKMKGDYHRYLA 139
>pdb|3M50|A Chain A, Structure Of The 14-3-3PMA2 COMPLEX STABILIZED BY
EPIBESTAT
pdb|3M51|A Chain A, Structure Of The 14-3-3PMA2 COMPLEX STABILIZED BY
PYRROLIDO
Length = 240
Score = 25.8 bits (55), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 9 ETCKIQTRQYKALKAQMLATASKEDQKTVIKKLKQDQRRKLA 50
E KI K L A+++ +A+ D K K+K D R LA
Sbjct: 98 ELSKICDGILKLLDAKLIPSAASGDSKVFYLKMKGDYHRYLA 139
>pdb|1O9C|A Chain A, Structural View Of A Fungal Toxin Acting On A 14-3-3
Regulatory Complex
pdb|1O9D|A Chain A, Structural View Of A Fungal Toxin Acting On A 14-3-3
Regulatory Complex
pdb|1O9E|A Chain A, Structural View Of A Fungal Toxin Acting On A 14-3-3
Regulatory Complex
pdb|1O9F|A Chain A, Structural View Of A Fungal Toxin Acting On A 14-3-3
Regulatory Complex
pdb|3E6Y|A Chain A, Structure Of 14-3-3 In Complex With The
Differentiation-Inducing Agent Cotylenin A
pdb|3E6Y|B Chain B, Structure Of 14-3-3 In Complex With The
Differentiation-Inducing Agent Cotylenin A
Length = 260
Score = 25.4 bits (54), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 21/43 (48%)
Query: 8 RETCKIQTRQYKALKAQMLATASKEDQKTVIKKLKQDQRRKLA 50
E KI K L A+++ +A+ D K K+K D R LA
Sbjct: 97 NELSKICDGILKLLDAKLIPSAASGDSKVFYLKMKGDYHRYLA 139
>pdb|3I2W|A Chain A, Crystal Structure Of EfcF-Bar Domain Of Drosophila
SyndapinPACSIN
pdb|3I2W|B Chain B, Crystal Structure Of EfcF-Bar Domain Of Drosophila
SyndapinPACSIN
Length = 290
Score = 25.4 bits (54), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Query: 54 DQYEQSIAEMLQKQSIRLDESQEV--ECHHL-KERLHYELEILMAYQS 98
++YEQ+IAE+ + S+ +++ V +C K RL + EIL S
Sbjct: 191 EKYEQAIAEITKYNSVYIEDXTSVFEKCQTFEKTRLQFFKEILFNVHS 238
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.126 0.329
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,441,126
Number of Sequences: 62578
Number of extensions: 70535
Number of successful extensions: 274
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 270
Number of HSP's gapped (non-prelim): 31
length of query: 111
length of database: 14,973,337
effective HSP length: 75
effective length of query: 36
effective length of database: 10,279,987
effective search space: 370079532
effective search space used: 370079532
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)