Query psy11606
Match_columns 111
No_of_seqs 35 out of 37
Neff 3.2
Searched_HMMs 29240
Date Fri Aug 16 22:58:23 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11606.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11606hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4e17_B Catenin alpha-1; four h 36.4 34 0.0011 20.5 2.9 20 76-98 18-37 (40)
2 3cl3_D NF-kappa-B essential mo 29.1 55 0.0019 23.9 3.6 47 42-88 78-127 (130)
3 4e18_B Catenin alpha-1; four h 26.4 68 0.0023 20.5 3.3 20 76-98 37-56 (59)
4 1jad_A PLC-beta, phospholipase 20.7 3.1E+02 0.011 21.5 10.1 68 36-103 74-149 (251)
5 3fxh_A Integron gene cassette 20.2 11 0.00039 27.2 -1.5 19 43-61 57-75 (135)
6 2l9b_A MRNA 3'-END-processing 18.3 96 0.0033 21.8 3.0 21 23-43 43-63 (109)
7 1lts_C Heat-labIle enterotoxin 17.4 75 0.0026 19.1 2.0 13 92-104 15-27 (41)
8 2y7c_A Type-1 restriction enzy 14.8 2.2E+02 0.0074 21.3 4.4 72 19-90 363-451 (464)
9 1lti_C LT-I, heat labIle enter 13.1 1.1E+02 0.0038 18.9 2.0 13 92-104 18-30 (48)
10 2kel_A SVTR protein, uncharact 12.9 40 0.0014 20.4 -0.1 27 41-67 20-46 (56)
No 1
>4e17_B Catenin alpha-1; four helix bundle, cell adhesion; 2.30A {Mus musculus}
Probab=36.37 E-value=34 Score=20.50 Aligned_cols=20 Identities=25% Similarity=0.664 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy11606 76 EVECHHLKERLHYELEILMAYQS 98 (111)
Q Consensus 76 e~E~~~L~~~Lq~ElelL~aYQs 98 (111)
.+||+++++-|| +||+.|..
T Consensus 18 v~eCnavrqALQ---dLlseY~~ 37 (40)
T 4e17_B 18 VAECNAVRQALQ---DLLSEYMG 37 (40)
T ss_dssp HHHHHHHHHHHH---HHHHHHHC
T ss_pred HHHHHHHHHHHH---HHHHHHhc
Confidence 689999999987 68888864
No 2
>3cl3_D NF-kappa-B essential modulator; death effector domain, coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia; 3.20A {Homo sapiens}
Probab=29.06 E-value=55 Score=23.90 Aligned_cols=47 Identities=23% Similarity=0.304 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcch---hhHHHHHHHHHHHHHH
Q psy11606 42 KQDQRRKLALLGDQYEQSIAEMLQKQSIRLD---ESQEVECHHLKERLHY 88 (111)
Q Consensus 42 KeEq~RKlA~L~eQYe~sI~em~~~q~~rLd---e~Qe~E~~~L~~~Lq~ 88 (111)
-+|.+||||.|-.-|.+-..|--..-...+- -+--...+.|+.+|++
T Consensus 78 ~~eEKrkLAqLQ~AY~~LfqeYd~~lK~~~~~~e~~~~~ql~dL~qqLq~ 127 (130)
T 3cl3_D 78 ASEEKRKLAQLQVAYHQLFQEYDNHIKSSVVGSERKRGMQLEDLKQQLQQ 127 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchHHHHHHHHHH
Confidence 4678999999999988776654331111110 1112355667777654
No 3
>4e18_B Catenin alpha-1; four helix bundle, cell adhesion; 2.40A {Mus musculus}
Probab=26.35 E-value=68 Score=20.51 Aligned_cols=20 Identities=25% Similarity=0.664 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy11606 76 EVECHHLKERLHYELEILMAYQS 98 (111)
Q Consensus 76 e~E~~~L~~~Lq~ElelL~aYQs 98 (111)
.+||+++++-|| +||+.|..
T Consensus 37 v~eCnavrqALQ---dLlsEY~~ 56 (59)
T 4e18_B 37 VAECNAVRQALQ---DLLSEYMG 56 (59)
T ss_dssp HHHHHHHHHHHH---HHHHHHHC
T ss_pred HHHHHHHHHHHH---HHHHHHhc
Confidence 789999999987 78998864
No 4
>1jad_A PLC-beta, phospholipase C beta; alpha helical coiled coil, hydrolase; 2.40A {Meleagris gallopavo} SCOP: h.4.10.1
Probab=20.68 E-value=3.1e+02 Score=21.54 Aligned_cols=68 Identities=21% Similarity=0.202 Sum_probs=46.9
Q ss_pred HHHHHhHHHHHHHHHHHH-HHHH-------HHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11606 36 TVIKKLKQDQRRKLALLG-DQYE-------QSIAEMLQKQSIRLDESQEVECHHLKERLHYELEILMAYQSKNKMQ 103 (111)
Q Consensus 36 ~vlk~lKeEq~RKlA~L~-eQYe-------~sI~em~~~q~~rLde~Qe~E~~~L~~~Lq~ElelL~aYQsK~k~q 103 (111)
.-+..|+.+++.-+..|+ +||+ .-|.+....-.-=+.++|.++...|+.....|..-|++=|.+..+.
T Consensus 74 ~kv~el~~~q~~el~~l~~~q~~eE~~~k~~Hl~eq~~~Lk~l~~e~Q~~QmK~Lk~~~ErE~KELkk~q~kks~e 149 (251)
T 1jad_A 74 SQVVELKERLEMELIHLGEEYHDGIRRRKEQHATEQTAKITELAREKQIAELKALKESSESNIKDIKKKLEAKRLD 149 (251)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445778888776655544 4554 2233333333334567999999999999999999999988877765
No 5
>3fxh_A Integron gene cassette protein HFX_CASS2; integron cassette protein, mobIle metagenome, structural genomics, PSI-2; 1.84A {Uncultured bacterium}
Probab=20.21 E-value=11 Score=27.17 Aligned_cols=19 Identities=32% Similarity=0.642 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy11606 43 QDQRRKLALLGDQYEQSIA 61 (111)
Q Consensus 43 eEq~RKlA~L~eQYe~sI~ 61 (111)
+||-|..|.|||-|-.||.
T Consensus 57 seqerfiaflaekysstik 75 (135)
T 3fxh_A 57 SEQERFIAFLAEKYSSTIK 75 (135)
T ss_dssp HHTTCHHHHHHHHTTTTCC
T ss_pred hHHHHHHHHHHHHhccceE
Confidence 5889999999999988763
No 6
>2l9b_A MRNA 3'-END-processing protein RNA15; 3' END mRNA maturation, transcription; NMR {Saccharomyces cerevisiae}
Probab=18.25 E-value=96 Score=21.79 Aligned_cols=21 Identities=29% Similarity=0.370 Sum_probs=18.9
Q ss_pred HHHhhcCChHHHHHHHHHhHH
Q psy11606 23 AQMLATASKEDQKTVIKKLKQ 43 (111)
Q Consensus 23 ~q~l~~~Pk~~~k~vlk~lKe 43 (111)
.+.|++.|+++.-+||+.||.
T Consensus 43 S~~Laslpp~Ql~eiL~qmK~ 63 (109)
T 2l9b_A 43 SSELAKKPKEVQLKFLQKFQE 63 (109)
T ss_dssp HHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHHH
Confidence 467899999999999999986
No 7
>1lts_C Heat-labIle enterotoxin, subunit A; 1.95A {Escherichia coli} SCOP: d.166.1.1 PDB: 1ltt_C* 1ltb_C
Probab=17.41 E-value=75 Score=19.08 Aligned_cols=13 Identities=54% Similarity=0.480 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHH
Q psy11606 92 ILMAYQSKNKMQA 104 (111)
Q Consensus 92 lL~aYQsK~k~q~ 104 (111)
-|..|||++|-+.
T Consensus 15 ~L~~fkk~vKRq~ 27 (41)
T 1lts_C 15 YLREYQSKVKRQI 27 (41)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4788999999764
No 8
>2y7c_A Type-1 restriction enzyme ecoki specificity prote; transferase; 18.00A {Escherichia coli} PDB: 2y7h_A*
Probab=14.77 E-value=2.2e+02 Score=21.33 Aligned_cols=72 Identities=15% Similarity=0.256 Sum_probs=41.1
Q ss_pred HHHHHHHhhcCChHHHHHHH----------HHhHHHHHHHHHHHHHHHHHHHHHHHHHhh---hcchhhHH----HHHHH
Q psy11606 19 KALKAQMLATASKEDQKTVI----------KKLKQDQRRKLALLGDQYEQSIAEMLQKQS---IRLDESQE----VECHH 81 (111)
Q Consensus 19 Kal~~q~l~~~Pk~~~k~vl----------k~lKeEq~RKlA~L~eQYe~sI~em~~~q~---~rLde~Qe----~E~~~ 81 (111)
+.+++-.+-.+|.++|+.|. .++.....+++..|.+--..-+..|+.-.- ++-|+.-. .-..+
T Consensus 363 ~~l~~~~i~lPpl~EQ~~Iv~~l~~~~~~id~l~~~~~~~~~~l~~lk~sLL~~af~Gel~~q~~~d~~~~~~~~~~a~~ 442 (464)
T 2y7c_A 363 KDIKSQVVLLPPVKEQAEIVRRVEQLFAYADTIEKQVNNALARVNNLTQSILAKAFRGELTAQWRAENPDLISGENSAAA 442 (464)
T ss_dssp HHHHHCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSHHHHSCCCCSSTHHHHSHHHHHH
T ss_pred HHHhcCcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCCCCCcccCcccccccccHHH
Confidence 44555556667889999985 445555566666666655555666665322 33444322 22555
Q ss_pred HHHHHHHHH
Q psy11606 82 LKERLHYEL 90 (111)
Q Consensus 82 L~~~Lq~El 90 (111)
|=++...|-
T Consensus 443 LL~ri~~er 451 (464)
T 2y7c_A 443 LLEKIKAER 451 (464)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666665554
No 9
>1lti_C LT-I, heat labIle enterotoxin type I; ADP-ribosyl transferase; HET: GAL A2G; 2.13A {Escherichia coli} SCOP: d.166.1.1 PDB: 1lta_C* 1htl_C* 1ltg_C
Probab=13.10 E-value=1.1e+02 Score=18.88 Aligned_cols=13 Identities=54% Similarity=0.480 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHH
Q psy11606 92 ILMAYQSKNKMQA 104 (111)
Q Consensus 92 lL~aYQsK~k~q~ 104 (111)
-|..|||++|-+.
T Consensus 18 ~L~~fkk~vKRq~ 30 (48)
T 1lti_C 18 YLREYQSKVKRQI 30 (48)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5788999998764
No 10
>2kel_A SVTR protein, uncharacterized protein 56B; homodimer, ribbon-helix-helix, transcription repres; NMR {Sulfolobus islandicus rod-shaped virus}
Probab=12.88 E-value=40 Score=20.44 Aligned_cols=27 Identities=7% Similarity=0.319 Sum_probs=22.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy11606 41 LKQDQRRKLALLGDQYEQSIAEMLQKQ 67 (111)
Q Consensus 41 lKeEq~RKlA~L~eQYe~sI~em~~~q 67 (111)
+-+|-.++++++|..=..||++++..-
T Consensus 20 Id~eLH~rlk~~Aa~~g~Sln~~i~eA 46 (56)
T 2kel_A 20 MDKDLKTRLKVYCAKNNLQLTQAIEEA 46 (56)
T ss_dssp EEHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred eCHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 457888999999999999999988653
Done!