RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy11606
         (111 letters)



>gnl|CDD|183579 PRK12540, PRK12540, RNA polymerase sigma factor; Provisional.
          Length = 182

 Score = 28.8 bits (64), Expect = 0.43
 Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 2/52 (3%)

Query: 4   RKQFRETCKIQTRQYKALKAQMLATA--SKEDQKTVIKKLKQDQRRKLALLG 53
           RK+ RE         K LK+Q    A    E+ +  + KL QDQR  L L+G
Sbjct: 73  RKRRREVEDADGSYAKTLKSQPGQNAHLEFEEFRAALDKLPQDQREALILVG 124


>gnl|CDD|188151 TIGR01517, ATPase-IIB_Ca, plasma-membrane calcium-translocating
           P-type ATPase.  This model describes the P-type ATPase
           responsible for translocating calcium ions across the
           plasma membrane of eukaryotes , out of the cell. In some
           organisms, this type of pump may also be found in
           vacuolar membranes. In humans and mice, at least, there
           are multiple isoforms of the PMCA pump with overlapping
           but not redundant functions. Accordingly, there are no
           human diseases linked to PMCA defects, although
           alterations of PMCA function do elicit physiological
           effects. The calcium P-type ATPases have been
           characterized as Type IIB based on a phylogenetic
           analysis which distinguishes this group from the Type
           IIA SERCA calcium pump. A separate analysis divides Type
           IIA into sub-types (SERCA and PMR1) which are modelled
           by TIGR01116 and TIGR01522. This model is well separated
           from those.
          Length = 944

 Score = 28.2 bits (63), Expect = 0.82
 Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 4/52 (7%)

Query: 4   RKQFRETCKIQTRQYKAL-KAQMLATASKEDQKTVIKKLKQDQRRKLALLGD 54
            K+FR    +       L K ++LA +S  D++ ++  LK D    +A+ GD
Sbjct: 631 GKEFRS--LVYEEMDPILPKLRVLARSSPLDKQLLVLMLK-DMGEVVAVTGD 679


>gnl|CDD|217680 pfam03702, UPF0075, Uncharacterized protein family (UPF0075).
          The proteins is this family are about 370 amino acids
          long and have no known function.
          Length = 365

 Score = 26.9 bits (60), Expect = 2.5
 Identities = 13/56 (23%), Positives = 26/56 (46%), Gaps = 7/56 (12%)

Query: 32 EDQKTVIKKLKQDQRRKLALLG--DQ-----YEQSIAEMLQKQSIRLDESQEVECH 80
             +  +  L Q     L+ LG  D      +  ++ E+LQKQ+++  + + + CH
Sbjct: 39 ASLRQKLLDLCQGGATTLSRLGELDHQLGLLFADAVNELLQKQNLKPSQIRAIGCH 94


>gnl|CDD|166510 PLN02869, PLN02869, fatty aldehyde decarbonylase.
          Length = 620

 Score = 26.0 bits (57), Expect = 5.0
 Identities = 9/35 (25%), Positives = 17/35 (48%)

Query: 26  LATASKEDQKTVIKKLKQDQRRKLALLGDQYEQSI 60
           +AT  +++ + + KKL   +     LL   Y + I
Sbjct: 475 VATFREDEYEKLNKKLPNTECGSKLLLSKNYSEKI 509


>gnl|CDD|179056 PRK00523, PRK00523, hypothetical protein; Provisional.
          Length = 72

 Score = 24.3 bits (53), Expect = 8.0
 Identities = 12/42 (28%), Positives = 20/42 (47%)

Query: 2  LIRKQFRETCKIQTRQYKALKAQMLATASKEDQKTVIKKLKQ 43
          + +KQ RE   I     +A+  QM    S+   K V++ +K 
Sbjct: 29 MFKKQIRENPPITENMIRAMYMQMGRKPSESQIKQVMRSVKN 70


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.316    0.126    0.329 

Gapped
Lambda     K      H
   0.267   0.0749    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,156,935
Number of extensions: 424280
Number of successful extensions: 629
Number of sequences better than 10.0: 1
Number of HSP's gapped: 624
Number of HSP's successfully gapped: 104
Length of query: 111
Length of database: 10,937,602
Length adjustment: 75
Effective length of query: 36
Effective length of database: 7,611,052
Effective search space: 273997872
Effective search space used: 273997872
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.2 bits)