RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy11606
         (111 letters)



>d2choa2 c.1.8.10 (A:127-436) Glucosaminidase GH84, catalytic domain
           {Bacteroides thetaiotaomicron [TaxId: 818]}
          Length = 310

 Score = 23.3 bits (50), Expect = 7.8
 Identities = 8/54 (14%), Positives = 19/54 (35%), Gaps = 4/54 (7%)

Query: 5   KQFRETCKI-QTRQYKALKAQMLATASKEDQKTVIKKLKQ---DQRRKLALLGD 54
           ++        +     A+        +KED+  ++ K ++      R  A+  D
Sbjct: 63  QELVAVANENEVDFVWAIHPGQDIKWNKEDRDLLLAKFEKMYQLGVRSFAVFFD 116


>d1g9la_ a.144.1.1 (A:) poly(A) binding protein {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 144

 Score = 23.0 bits (49), Expect = 8.8
 Identities = 20/88 (22%), Positives = 41/88 (46%), Gaps = 5/88 (5%)

Query: 21  LKAQMLATASKEDQKTVI-KKLKQDQRRKLALLGDQYEQSIAEMLQKQSIRLDESQEVEC 79
           L A MLA+A  ++QK ++ ++L    +     L  +    + E+   + + + ES E   
Sbjct: 53  LTASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPES-- 110

Query: 80  HHLKERLHYELEILMAYQSKNKMQAEAQ 107
             L+ ++   + +L A+Q+K   Q    
Sbjct: 111 --LRSKVDEAVAVLQAHQAKEAAQKAVN 136


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.126    0.329 

Gapped
Lambda     K      H
   0.267   0.0569    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 348,209
Number of extensions: 13130
Number of successful extensions: 62
Number of sequences better than 10.0: 1
Number of HSP's gapped: 62
Number of HSP's successfully gapped: 15
Length of query: 111
Length of database: 2,407,596
Length adjustment: 70
Effective length of query: 41
Effective length of database: 1,446,496
Effective search space: 59306336
Effective search space used: 59306336
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.2 bits)