BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11608
(99 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8SX83|SPEN_DROME Protein split ends OS=Drosophila melanogaster GN=spen PE=1 SV=2
Length = 5560
Score = 87.0 bits (214), Expect = 3e-17, Method: Composition-based stats.
Identities = 38/61 (62%), Positives = 49/61 (80%), Gaps = 1/61 (1%)
Query: 6 VDIKKQSSASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKSLATTCVWVDGVAG 65
+DIKKQ +A+AF QY+DI SVV+AMR MDGE++G NR+ LG+GKS+ T CVW+DGV
Sbjct: 685 IDIKKQG-LNAYAFCQYSDIVSVVKAMRKMDGEHLGSNRIKLGFGKSMPTNCVWIDGVDE 743
Query: 66 K 66
K
Sbjct: 744 K 744
>sp|Q62504|MINT_MOUSE Msx2-interacting protein OS=Mus musculus GN=Spen PE=1 SV=2
Length = 3644
Score = 83.2 bits (204), Expect = 4e-16, Method: Composition-based stats.
Identities = 33/59 (55%), Positives = 48/59 (81%)
Query: 6 VDIKKQSSASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKSLATTCVWVDGVA 64
+DIKK + +AF+QY DIASV +A++ MDGEY+G+NR+ LG+GKS+ T CVW+DG++
Sbjct: 468 IDIKKVNGVPQYAFLQYCDIASVCKAIKKMDGEYLGNNRLKLGFGKSMPTNCVWLDGLS 526
>sp|Q96T58|MINT_HUMAN Msx2-interacting protein OS=Homo sapiens GN=SPEN PE=1 SV=1
Length = 3664
Score = 83.2 bits (204), Expect = 4e-16, Method: Composition-based stats.
Identities = 33/59 (55%), Positives = 48/59 (81%)
Query: 6 VDIKKQSSASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKSLATTCVWVDGVA 64
+DIKK + +AF+QY DIASV +A++ MDGEY+G+NR+ LG+GKS+ T CVW+DG++
Sbjct: 467 IDIKKVNGVPQYAFLQYCDIASVCKAIKKMDGEYLGNNRLKLGFGKSMPTNCVWLDGLS 525
>sp|Q6PHZ5|RB15B_MOUSE Putative RNA-binding protein 15B OS=Mus musculus GN=Rbm15b PE=1
SV=2
Length = 887
Score = 45.4 bits (106), Expect = 1e-04, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 32/54 (59%)
Query: 11 QSSASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKSLATTCVWVDGVA 64
+ A+AF+++ ++ RA AM G +G N + +GYGK+ TT +WV G+
Sbjct: 369 RGQGGAYAFLKFQNLDMAHRAKVAMSGRVIGRNPIKIGYGKANPTTRLWVGGLG 422
>sp|Q8NDT2|RB15B_HUMAN Putative RNA-binding protein 15B OS=Homo sapiens GN=RBM15B PE=1
SV=3
Length = 890
Score = 45.4 bits (106), Expect = 1e-04, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 32/54 (59%)
Query: 11 QSSASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKSLATTCVWVDGVA 64
+ A+AF+++ ++ RA AM G +G N + +GYGK+ TT +WV G+
Sbjct: 373 RGQGGAYAFLKFQNLDMAHRAKVAMSGRVIGRNPIKIGYGKANPTTRLWVGGLG 426
>sp|Q96T37|RBM15_HUMAN Putative RNA-binding protein 15 OS=Homo sapiens GN=RBM15 PE=1 SV=2
Length = 977
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 38/65 (58%), Gaps = 2/65 (3%)
Query: 2 VMYFVDIKKQS--SASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKSLATTCVW 59
V+ VDIK+ S S + F+++ ++ RA AM G+ + N + +GYGK+ TT +W
Sbjct: 399 VITEVDIKRPSRGQTSTYGFLKFENLDMSHRAKLAMSGKIIIRNPIKIGYGKATPTTRLW 458
Query: 60 VDGVA 64
V G+
Sbjct: 459 VGGLG 463
>sp|Q6AXT7|RBM42_RAT RNA-binding protein 42 OS=Rattus norvegicus GN=Rbm42 PE=1 SV=1
Length = 474
Score = 37.4 bits (85), Expect = 0.027, Method: Composition-based stats.
Identities = 15/39 (38%), Positives = 22/39 (56%)
Query: 9 KKQSSASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNL 47
K+ + FV + D + VRAMR M+G+YVG + L
Sbjct: 410 KRTGKTKGYGFVSFKDPSDYVRAMREMNGKYVGSRPIKL 448
>sp|Q91V81|RBM42_MOUSE RNA-binding protein 42 OS=Mus musculus GN=Rbm42 PE=1 SV=1
Length = 474
Score = 37.4 bits (85), Expect = 0.027, Method: Composition-based stats.
Identities = 15/39 (38%), Positives = 22/39 (56%)
Query: 9 KKQSSASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNL 47
K+ + FV + D + VRAMR M+G+YVG + L
Sbjct: 410 KRTGKTKGYGFVSFKDPSDYVRAMREMNGKYVGSRPIKL 448
>sp|Q9BTD8|RBM42_HUMAN RNA-binding protein 42 OS=Homo sapiens GN=RBM42 PE=1 SV=1
Length = 480
Score = 37.4 bits (85), Expect = 0.027, Method: Composition-based stats.
Identities = 15/39 (38%), Positives = 22/39 (56%)
Query: 9 KKQSSASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNL 47
K+ + FV + D + VRAMR M+G+YVG + L
Sbjct: 416 KRTGKTKGYGFVSFKDPSDYVRAMREMNGKYVGSRPIKL 454
>sp|Q0P5L0|RBM42_BOVIN RNA-binding protein 42 OS=Bos taurus GN=RBM42 PE=2 SV=1
Length = 448
Score = 37.4 bits (85), Expect = 0.027, Method: Composition-based stats.
Identities = 15/39 (38%), Positives = 22/39 (56%)
Query: 9 KKQSSASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNL 47
K+ + FV + D + VRAMR M+G+YVG + L
Sbjct: 384 KRTGKTKGYGFVSFKDPSDYVRAMREMNGKYVGSRPIKL 422
>sp|Q66KL9|RBM42_XENTR RNA-binding protein 42 OS=Xenopus tropicalis GN=rbm42 PE=2 SV=1
Length = 392
Score = 36.2 bits (82), Expect = 0.057, Method: Composition-based stats.
Identities = 15/39 (38%), Positives = 21/39 (53%)
Query: 9 KKQSSASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNL 47
K+ + FV + D VRAMR M+G+YVG + L
Sbjct: 328 KRTGKTKGYGFVSFKDPNDYVRAMREMNGKYVGSRPIKL 366
>sp|Q6DRG1|RBM42_DANRE RNA-binding protein 42 OS=Danio rerio GN=rbm42 PE=2 SV=2
Length = 402
Score = 35.8 bits (81), Expect = 0.074, Method: Composition-based stats.
Identities = 15/39 (38%), Positives = 20/39 (51%)
Query: 9 KKQSSASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNL 47
K+ + FV + D VRAMR M+G YVG + L
Sbjct: 338 KRTGKTKGYGFVSFKDPNDYVRAMREMNGRYVGSRPIKL 376
>sp|Q9LEB3|RBP47_NICPL Polyadenylate-binding protein RBP47 OS=Nicotiana plumbaginifolia
GN=RBP47 PE=1 SV=1
Length = 428
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Query: 19 FVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKSLATTCVWVDGVAGKCG--TGEHNRVN 76
FVQ++D +S A++ + G +G V L +G+S A + D + G G N
Sbjct: 334 FVQFSDRSSAQEAIQKLSGAIIGKQAVRLSWGRSPANKQMRTDSGSQWNGGYNGRQNYGG 393
Query: 77 LGYGKS 82
GYG S
Sbjct: 394 YGYGAS 399
>sp|A2VDB3|RBM42_XENLA RNA-binding protein 42 OS=Xenopus laevis GN=rbm42 PE=2 SV=1
Length = 392
Score = 33.9 bits (76), Expect = 0.33, Method: Composition-based stats.
Identities = 14/39 (35%), Positives = 20/39 (51%)
Query: 9 KKQSSASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNL 47
K+ + FV + D VRA R M+G+YVG + L
Sbjct: 328 KRTGKTKGYGFVSFKDPNDYVRATREMNGKYVGSRPIKL 366
>sp|Q0WW84|RB47B_ARATH Polyadenylate-binding protein RBP47B OS=Arabidopsis thaliana
GN=RBP47B PE=2 SV=1
Length = 435
Score = 30.8 bits (68), Expect = 2.5, Method: Composition-based stats.
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 18 AFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKS 52
FVQ+ D S A+ +++G +G N V L +G+S
Sbjct: 359 GFVQFADRKSAEDAIESLNGTVIGKNTVRLSWGRS 393
>sp|Q00539|NAM8_YEAST Protein NAM8 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=NAM8 PE=1 SV=2
Length = 523
Score = 30.4 bits (67), Expect = 3.2, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 22/41 (53%)
Query: 18 AFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKSLATTCV 58
FVQY D S A+ M G + ++RV L +G+S T +
Sbjct: 351 GFVQYVDRLSAEAAIAGMQGFPIANSRVRLSWGRSAKQTAL 391
>sp|Q96252|ATP4_ARATH ATP synthase subunit delta', mitochondrial OS=Arabidopsis thaliana
GN=At5g47030 PE=1 SV=1
Length = 203
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 17/73 (23%), Positives = 38/73 (52%), Gaps = 4/73 (5%)
Query: 7 DIKKQSSASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLG---YGKSLATTCVWVDGV 63
D+KK +S FAF+ +A ++ A+ A+ +++ ++V G + + LA+ ++
Sbjct: 127 DVKKYFLSSGFAFLHANSVADII-AVEAVPLDHIDPSQVQKGLAEFQQKLASATTDLEKA 185
Query: 64 AGKCGTGEHNRVN 76
+ G H+ +N
Sbjct: 186 EAQIGVEVHSAIN 198
>sp|Q4IE79|PPIL4_GIBZE Peptidyl-prolyl cis-trans isomerase-like 4 OS=Gibberella zeae
(strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084)
GN=CYP6 PE=3 SV=2
Length = 485
Score = 30.0 bits (66), Expect = 4.5, Method: Composition-based stats.
Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 7/73 (9%)
Query: 9 KKQSSASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKSLAT-TCVWVDGVAGKC 67
+K + +AF++Y D AS A M G + R+++ + +S++ + VW +
Sbjct: 286 QKTGDSLQYAFIEYEDKASCEAAYFKMQGVLIDDRRIHVDFSQSVSKLSDVW------RK 339
Query: 68 GTGEHNRVNLGYG 80
T R N G G
Sbjct: 340 DTNSKRRTNAGRG 352
>sp|P27476|NSR1_YEAST Nuclear localization sequence-binding protein OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=NSR1 PE=1
SV=1
Length = 414
Score = 29.3 bits (64), Expect = 7.3, Method: Composition-based stats.
Identities = 10/34 (29%), Positives = 21/34 (61%)
Query: 16 AFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGY 49
F +VQ++++ +A+ A+ GEY+ + V L +
Sbjct: 309 GFGYVQFSNMEDAKKALDALQGEYIDNRPVRLDF 342
>sp|Q9FPJ8|RB45A_ARATH Polyadenylate-binding protein RBP45A OS=Arabidopsis thaliana
GN=RBP45A PE=2 SV=1
Length = 387
Score = 29.3 bits (64), Expect = 8.1, Method: Composition-based stats.
Identities = 12/35 (34%), Positives = 20/35 (57%)
Query: 18 AFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKS 52
FVQY + AS A+ ++G +G + L +G+S
Sbjct: 298 GFVQYANKASAEHALSVLNGTQLGGQSIRLSWGRS 332
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.134 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,651,657
Number of Sequences: 539616
Number of extensions: 1254929
Number of successful extensions: 2733
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 2704
Number of HSP's gapped (non-prelim): 32
length of query: 99
length of database: 191,569,459
effective HSP length: 68
effective length of query: 31
effective length of database: 154,875,571
effective search space: 4801142701
effective search space used: 4801142701
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)