Query psy11608
Match_columns 99
No_of_seqs 103 out of 1043
Neff 6.9
Searched_HMMs 46136
Date Fri Aug 16 22:59:55 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11608.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11608hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01659 sex-lethal sex-letha 99.9 9.2E-22 2E-26 150.6 11.6 95 2-97 133-234 (346)
2 KOG0148|consensus 99.8 8.5E-21 1.8E-25 140.9 9.5 90 2-92 88-200 (321)
3 KOG0145|consensus 99.8 4.8E-21 1E-25 142.2 6.8 95 2-97 67-168 (360)
4 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.8 6E-20 1.3E-24 137.9 12.6 94 2-96 29-129 (352)
5 TIGR01645 half-pint poly-U bin 99.8 9E-20 2E-24 147.8 12.0 95 2-97 133-245 (612)
6 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.8 4.2E-18 9.2E-23 127.8 12.7 96 2-98 115-311 (352)
7 TIGR01622 SF-CC1 splicing fact 99.7 2.1E-17 4.5E-22 128.3 12.6 94 2-97 115-227 (457)
8 TIGR01628 PABP-1234 polyadenyl 99.7 1.3E-17 2.9E-22 132.8 11.5 90 2-92 26-124 (562)
9 KOG0131|consensus 99.7 4.5E-18 9.7E-23 120.3 5.5 96 2-97 35-138 (203)
10 TIGR01628 PABP-1234 polyadenyl 99.7 1.5E-16 3.3E-21 126.8 12.0 93 2-96 204-324 (562)
11 TIGR01642 U2AF_lg U2 snRNP aux 99.7 1.5E-16 3.3E-21 124.7 10.9 90 3-97 214-336 (509)
12 KOG0124|consensus 99.7 5.2E-17 1.1E-21 125.3 7.8 93 2-95 139-249 (544)
13 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.7 5.4E-16 1.2E-20 122.5 12.2 78 2-81 302-420 (481)
14 KOG0123|consensus 99.7 5.9E-16 1.3E-20 119.6 9.9 90 2-93 24-113 (369)
15 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.6 3E-15 6.4E-20 118.3 12.3 89 2-94 28-134 (481)
16 KOG0109|consensus 99.6 1.9E-15 4.1E-20 113.4 6.6 80 2-86 28-109 (346)
17 KOG0144|consensus 99.6 3.8E-15 8.3E-20 116.3 5.7 95 2-97 60-167 (510)
18 TIGR01648 hnRNP-R-Q heterogene 99.6 3.5E-14 7.6E-19 114.9 10.4 79 2-82 84-165 (578)
19 TIGR01648 hnRNP-R-Q heterogene 99.5 5.4E-14 1.2E-18 113.8 10.7 74 13-86 180-266 (578)
20 KOG0127|consensus 99.5 5.7E-14 1.2E-18 112.3 10.4 95 3-98 144-334 (678)
21 KOG0105|consensus 99.5 7.4E-14 1.6E-18 99.7 8.3 90 2-92 32-151 (241)
22 KOG0117|consensus 99.5 9.3E-14 2E-18 108.8 9.4 80 2-83 109-192 (506)
23 KOG0117|consensus 99.5 5.1E-14 1.1E-18 110.3 8.0 88 3-91 192-294 (506)
24 KOG4205|consensus 99.4 2.3E-13 5E-18 103.3 6.2 92 3-96 33-137 (311)
25 TIGR01642 U2AF_lg U2 snRNP aux 99.4 2.8E-12 6.1E-17 100.7 11.0 84 2-85 321-449 (509)
26 KOG0110|consensus 99.4 1.4E-12 3.1E-17 106.3 8.1 83 13-98 558-653 (725)
27 KOG0127|consensus 99.3 3.8E-12 8.1E-17 102.0 7.6 97 2-99 31-160 (678)
28 TIGR01622 SF-CC1 splicing fact 99.3 3.7E-11 7.9E-16 93.4 11.5 48 2-49 212-262 (457)
29 KOG0123|consensus 99.3 1.9E-11 4.1E-16 94.7 9.8 91 1-93 101-204 (369)
30 KOG0145|consensus 99.2 3.8E-11 8.1E-16 89.7 8.5 86 12-98 166-320 (360)
31 PLN03134 glycine-rich RNA-bind 99.2 1.6E-10 3.4E-15 79.0 8.1 53 2-54 60-115 (144)
32 KOG0147|consensus 99.1 7E-11 1.5E-15 94.4 5.9 95 2-98 205-320 (549)
33 smart00361 RRM_1 RNA recogniti 99.1 3.5E-10 7.7E-15 68.1 7.2 36 12-47 34-69 (70)
34 PF13893 RRM_5: RNA recognitio 99.1 6.2E-10 1.3E-14 63.9 7.3 47 2-50 10-56 (56)
35 KOG0144|consensus 99.1 7.6E-10 1.6E-14 86.9 8.0 49 2-50 150-203 (510)
36 KOG4206|consensus 99.0 3.2E-09 7E-14 77.1 8.1 84 2-85 39-176 (221)
37 PF00076 RRM_1: RNA recognitio 98.9 2.9E-09 6.3E-14 62.2 6.0 45 2-46 24-70 (70)
38 KOG0125|consensus 98.9 1.7E-09 3.7E-14 82.6 6.1 50 2-51 122-172 (376)
39 KOG0149|consensus 98.9 1.2E-09 2.5E-14 80.1 4.3 43 55-98 12-54 (247)
40 COG0724 RNA-binding proteins ( 98.9 1.4E-08 3.1E-13 70.5 9.3 82 2-83 141-253 (306)
41 PLN03134 glycine-rich RNA-bind 98.9 2.7E-09 5.8E-14 72.9 5.4 44 54-98 33-76 (144)
42 KOG1457|consensus 98.9 1.1E-08 2.4E-13 75.1 8.2 44 6-49 64-114 (284)
43 KOG0146|consensus 98.8 2.5E-08 5.5E-13 75.0 8.6 41 56-97 286-326 (371)
44 TIGR01645 half-pint poly-U bin 98.8 1.8E-08 3.8E-13 82.5 7.8 53 2-54 230-285 (612)
45 smart00360 RRM RNA recognition 98.8 3.4E-08 7.4E-13 56.2 6.9 46 2-47 22-70 (71)
46 KOG0112|consensus 98.8 1.8E-09 4E-14 90.3 1.9 83 2-84 398-484 (975)
47 KOG0106|consensus 98.8 5E-09 1.1E-13 76.1 3.8 76 3-83 28-127 (216)
48 KOG0122|consensus 98.8 2E-08 4.4E-13 74.1 6.4 52 2-53 215-269 (270)
49 KOG4207|consensus 98.7 9.2E-09 2E-13 74.7 3.9 48 3-50 40-90 (256)
50 PF14259 RRM_6: RNA recognitio 98.7 8.4E-08 1.8E-12 56.7 6.4 45 2-46 24-70 (70)
51 PLN03120 nucleic acid binding 98.7 7.7E-08 1.7E-12 71.6 7.4 49 2-51 30-78 (260)
52 smart00362 RRM_2 RNA recogniti 98.7 1.6E-07 3.5E-12 53.6 7.1 46 2-47 25-71 (72)
53 PF00076 RRM_1: RNA recognitio 98.7 4E-08 8.6E-13 57.3 4.4 33 58-91 1-33 (70)
54 KOG0107|consensus 98.7 4.5E-08 9.8E-13 69.4 5.2 48 2-51 36-83 (195)
55 KOG0126|consensus 98.6 1.6E-08 3.4E-13 72.3 2.2 44 54-98 34-77 (219)
56 KOG0148|consensus 98.6 1.1E-07 2.3E-12 71.5 6.6 49 2-53 190-238 (321)
57 KOG0111|consensus 98.6 3.8E-08 8.3E-13 72.3 4.1 51 3-53 37-90 (298)
58 KOG4208|consensus 98.6 8.6E-08 1.9E-12 69.2 5.1 47 3-49 77-126 (214)
59 KOG0226|consensus 98.6 2.8E-08 6.1E-13 73.8 2.4 41 9-49 226-266 (290)
60 TIGR01659 sex-lethal sex-letha 98.5 3E-07 6.5E-12 70.8 7.3 51 2-52 219-274 (346)
61 PLN03120 nucleic acid binding 98.5 1E-07 2.2E-12 71.0 4.2 42 55-97 4-45 (260)
62 cd00590 RRM RRM (RNA recogniti 98.5 1E-06 2.2E-11 50.5 7.4 48 2-49 25-74 (74)
63 KOG0149|consensus 98.4 2.3E-07 5.1E-12 68.1 4.3 46 2-48 38-86 (247)
64 PF14259 RRM_6: RNA recognitio 98.4 6.7E-07 1.5E-11 52.7 4.7 35 58-93 1-35 (70)
65 PLN03121 nucleic acid binding 98.4 4.1E-07 8.8E-12 67.2 4.3 42 55-97 5-46 (243)
66 KOG1190|consensus 98.4 2.6E-06 5.6E-11 67.0 8.9 81 3-85 325-444 (492)
67 PLN03121 nucleic acid binding 98.4 1.4E-06 3.1E-11 64.3 6.6 48 2-50 31-78 (243)
68 COG0724 RNA-binding proteins ( 98.3 8E-07 1.7E-11 61.7 4.7 43 55-98 115-157 (306)
69 KOG0108|consensus 98.3 9E-07 2E-11 70.1 5.3 52 2-53 44-98 (435)
70 KOG0107|consensus 98.3 7.3E-07 1.6E-11 63.3 3.5 36 55-93 10-45 (195)
71 KOG0113|consensus 98.2 4.7E-06 1E-10 63.3 6.6 50 2-51 127-179 (335)
72 PLN03213 repressor of silencin 98.2 4.2E-06 9.2E-11 67.5 6.2 78 2-83 36-131 (759)
73 KOG0114|consensus 98.2 6.4E-06 1.4E-10 54.4 5.8 51 2-52 44-94 (124)
74 KOG0146|consensus 98.2 7E-07 1.5E-11 67.3 1.4 42 12-53 324-365 (371)
75 PLN03213 repressor of silencin 98.2 2.4E-06 5.2E-11 68.9 4.5 38 55-95 10-47 (759)
76 KOG0113|consensus 98.1 2.3E-06 5.1E-11 64.9 3.9 45 53-98 99-143 (335)
77 KOG4212|consensus 98.1 2.1E-05 4.5E-10 62.7 9.1 91 3-94 72-253 (608)
78 KOG0122|consensus 98.1 4.7E-06 1E-10 61.8 4.3 43 55-98 189-231 (270)
79 KOG0115|consensus 98.1 6.3E-06 1.4E-10 61.4 4.7 65 25-93 4-68 (275)
80 KOG0147|consensus 98.0 8E-06 1.7E-10 65.8 5.2 47 2-48 304-353 (549)
81 smart00362 RRM_2 RNA recogniti 98.0 6.8E-06 1.5E-10 46.7 3.5 35 57-92 1-35 (72)
82 KOG0126|consensus 98.0 2.7E-06 5.7E-11 61.0 1.9 47 2-48 61-110 (219)
83 KOG0131|consensus 98.0 7.7E-06 1.7E-10 58.4 3.5 44 8-51 129-175 (203)
84 KOG0125|consensus 98.0 7.6E-06 1.6E-10 62.9 3.6 44 55-98 96-139 (376)
85 KOG0109|consensus 97.9 4.7E-06 1E-10 63.3 2.2 32 56-87 3-34 (346)
86 cd00590 RRM RRM (RNA recogniti 97.9 2.2E-05 4.8E-10 44.7 4.1 35 57-92 1-35 (74)
87 KOG0105|consensus 97.9 8.7E-06 1.9E-10 58.6 2.2 32 54-85 5-36 (241)
88 smart00360 RRM RNA recognition 97.9 2.2E-05 4.7E-10 44.3 3.5 35 60-95 1-35 (71)
89 KOG4211|consensus 97.8 0.00019 4.1E-09 57.6 9.7 96 2-98 35-146 (510)
90 KOG0114|consensus 97.8 2.7E-05 5.8E-10 51.5 4.1 40 55-95 18-57 (124)
91 KOG0415|consensus 97.8 4E-05 8.7E-10 59.7 4.6 51 2-52 265-318 (479)
92 KOG0121|consensus 97.8 4.9E-05 1.1E-09 51.9 4.5 48 3-50 63-113 (153)
93 KOG0415|consensus 97.7 2.8E-05 6.1E-10 60.6 3.2 44 53-97 237-280 (479)
94 KOG0226|consensus 97.6 5.6E-05 1.2E-09 56.5 3.5 85 13-98 138-232 (290)
95 KOG4205|consensus 97.6 6.8E-05 1.5E-09 57.3 4.1 43 54-97 5-47 (311)
96 KOG4210|consensus 97.6 0.00012 2.6E-09 55.2 5.0 86 12-98 127-227 (285)
97 KOG0110|consensus 97.5 9.3E-05 2E-09 61.3 4.1 42 10-51 4-45 (725)
98 KOG0132|consensus 97.5 6.6E-05 1.4E-09 62.9 3.2 31 55-85 421-451 (894)
99 KOG0121|consensus 97.4 0.00011 2.3E-09 50.3 2.6 40 54-94 35-74 (153)
100 KOG0130|consensus 97.4 0.00016 3.5E-09 49.9 2.7 41 55-96 72-112 (170)
101 KOG0108|consensus 97.3 0.00023 5E-09 56.6 3.8 42 56-98 19-60 (435)
102 KOG0130|consensus 97.3 0.0003 6.4E-09 48.6 3.1 48 3-50 99-149 (170)
103 KOG0151|consensus 97.2 0.0004 8.7E-09 58.0 4.2 52 2-53 200-257 (877)
104 PF11608 Limkain-b1: Limkain b 97.2 0.00058 1.3E-08 43.4 4.0 37 14-50 38-74 (90)
105 KOG0153|consensus 97.2 0.00034 7.4E-09 54.2 3.4 34 55-88 228-261 (377)
106 KOG0124|consensus 97.2 0.00064 1.4E-08 53.5 4.8 50 2-51 236-288 (544)
107 KOG0132|consensus 97.2 0.00067 1.5E-08 57.1 5.1 48 2-52 447-494 (894)
108 KOG0129|consensus 97.2 0.002 4.3E-08 52.0 7.5 74 16-92 307-405 (520)
109 KOG4454|consensus 97.2 0.00032 6.9E-09 51.7 2.7 74 2-84 35-113 (267)
110 PF04059 RRM_2: RNA recognitio 97.2 0.00079 1.7E-08 43.4 4.2 41 13-53 43-87 (97)
111 KOG0151|consensus 97.1 0.00044 9.4E-09 57.8 2.9 35 55-89 174-208 (877)
112 KOG0111|consensus 97.0 0.00025 5.4E-09 52.4 1.2 41 55-96 10-50 (298)
113 KOG0120|consensus 97.0 0.00085 1.9E-08 54.2 4.0 83 13-97 221-330 (500)
114 KOG1456|consensus 97.0 0.009 1.9E-07 47.2 9.4 48 2-51 148-197 (494)
115 KOG2193|consensus 97.0 0.00014 2.9E-09 58.0 -0.6 79 15-93 37-118 (584)
116 KOG0153|consensus 97.0 0.0023 5E-08 49.7 5.8 47 3-52 255-302 (377)
117 KOG0116|consensus 96.9 0.0011 2.5E-08 52.5 3.9 33 56-88 289-321 (419)
118 KOG0533|consensus 96.9 0.0012 2.6E-08 48.9 3.6 43 55-98 83-125 (243)
119 KOG4212|consensus 96.8 0.0014 3E-08 52.6 3.6 44 4-49 564-607 (608)
120 KOG4209|consensus 96.7 0.0022 4.8E-08 47.1 4.0 47 3-50 128-177 (231)
121 KOG4206|consensus 96.7 0.0015 3.3E-08 47.8 3.1 32 54-85 8-43 (221)
122 KOG0120|consensus 96.7 0.0051 1.1E-07 49.8 6.1 48 2-49 435-488 (500)
123 KOG4661|consensus 96.6 0.0013 2.8E-08 54.3 2.5 38 54-92 404-441 (940)
124 KOG4660|consensus 96.5 0.0014 3E-08 53.2 2.1 33 53-85 73-105 (549)
125 KOG1548|consensus 96.5 0.0029 6.3E-08 49.1 3.3 29 55-83 134-162 (382)
126 KOG0128|consensus 96.3 0.0022 4.7E-08 54.4 2.0 62 12-86 706-767 (881)
127 KOG4207|consensus 96.3 0.0031 6.7E-08 46.3 2.4 41 55-96 13-53 (256)
128 KOG1456|consensus 96.2 0.055 1.2E-06 42.9 8.9 79 2-82 314-433 (494)
129 KOG1996|consensus 96.1 0.007 1.5E-07 46.4 3.6 33 17-49 331-363 (378)
130 KOG0129|consensus 96.0 0.0047 1E-07 49.9 2.4 28 55-82 259-286 (520)
131 KOG4660|consensus 96.0 0.0037 8E-08 50.8 1.8 71 12-83 109-205 (549)
132 KOG1548|consensus 95.5 0.039 8.4E-07 43.0 5.6 45 3-48 303-347 (382)
133 KOG4661|consensus 95.5 0.022 4.9E-07 47.2 4.4 46 8-53 440-485 (940)
134 PF07292 NID: Nmi/IFP 35 domai 95.4 0.057 1.2E-06 34.3 5.3 59 18-76 1-73 (88)
135 smart00361 RRM_1 RNA recogniti 95.4 0.022 4.8E-07 33.7 3.1 27 68-94 1-31 (70)
136 PF08675 RNA_bind: RNA binding 95.2 0.042 9.1E-07 34.8 4.1 35 55-93 9-43 (87)
137 KOG3152|consensus 95.0 0.027 5.8E-07 42.3 3.2 37 54-93 73-109 (278)
138 KOG2314|consensus 94.9 0.029 6.2E-07 46.3 3.5 36 12-47 102-138 (698)
139 PF08777 RRM_3: RNA binding mo 94.7 0.036 7.9E-07 35.9 2.9 26 57-82 3-28 (105)
140 KOG0106|consensus 94.6 0.023 4.9E-07 41.6 2.0 30 56-85 2-31 (216)
141 COG5175 MOT2 Transcriptional r 94.1 0.15 3.2E-06 40.1 5.5 33 19-51 169-201 (480)
142 KOG2202|consensus 94.0 0.033 7.2E-07 41.6 1.8 37 13-49 108-144 (260)
143 KOG1365|consensus 93.8 0.064 1.4E-06 42.6 3.1 86 7-93 197-320 (508)
144 PF14605 Nup35_RRM_2: Nup53/35 93.6 0.056 1.2E-06 30.9 1.9 28 56-84 2-29 (53)
145 PF13893 RRM_5: RNA recognitio 93.5 0.079 1.7E-06 29.6 2.4 14 72-85 1-14 (56)
146 KOG4676|consensus 93.1 0.065 1.4E-06 42.6 2.2 68 16-83 53-179 (479)
147 KOG0533|consensus 93.0 0.2 4.4E-06 37.2 4.5 41 9-49 118-158 (243)
148 KOG0116|consensus 92.7 0.19 4.2E-06 40.0 4.3 43 6-49 320-363 (419)
149 PF08952 DUF1866: Domain of un 92.2 0.33 7.2E-06 33.5 4.5 33 16-49 71-103 (146)
150 KOG4209|consensus 91.9 0.16 3.6E-06 37.3 2.8 43 53-96 99-141 (231)
151 KOG1457|consensus 91.7 0.16 3.4E-06 37.9 2.5 28 55-82 34-61 (284)
152 PF03880 DbpA: DbpA RNA bindin 90.7 0.75 1.6E-05 27.6 4.5 41 3-49 33-73 (74)
153 KOG4307|consensus 90.3 0.57 1.2E-05 39.9 4.8 44 5-48 897-942 (944)
154 KOG4454|consensus 90.1 0.075 1.6E-06 39.4 -0.4 31 54-84 8-38 (267)
155 COG5175 MOT2 Transcriptional r 89.3 0.49 1.1E-05 37.2 3.5 37 55-94 114-156 (480)
156 KOG4208|consensus 89.0 0.63 1.4E-05 34.0 3.7 44 55-98 49-92 (214)
157 KOG1190|consensus 87.8 0.67 1.4E-05 37.2 3.4 33 53-85 26-58 (492)
158 PF04847 Calcipressin: Calcipr 87.5 1.5 3.3E-05 31.1 4.9 39 14-52 30-70 (184)
159 PF11767 SET_assoc: Histone ly 87.1 1.5 3.2E-05 26.3 3.9 28 19-46 37-64 (66)
160 PF05172 Nup35_RRM: Nup53/35/4 87.0 2 4.3E-05 27.7 4.8 37 13-50 52-89 (100)
161 PF02714 DUF221: Domain of unk 84.2 2.2 4.8E-05 31.9 4.6 56 18-77 1-56 (325)
162 KOG0112|consensus 84.2 0.34 7.3E-06 41.9 0.2 31 55-85 372-402 (975)
163 PF14605 Nup35_RRM_2: Nup53/35 83.1 2.5 5.3E-05 23.9 3.5 21 12-32 33-53 (53)
164 KOG4210|consensus 82.5 0.53 1.2E-05 35.6 0.7 48 13-61 225-274 (285)
165 PF15023 DUF4523: Protein of u 81.5 3.7 8.1E-05 28.7 4.5 44 2-50 116-159 (166)
166 KOG1855|consensus 80.9 1.9 4.1E-05 34.8 3.2 33 53-85 229-261 (484)
167 PF15513 DUF4651: Domain of un 80.9 1.7 3.6E-05 25.9 2.3 19 70-91 9-27 (62)
168 PF07576 BRAP2: BRCA1-associat 80.8 6.9 0.00015 25.6 5.4 41 2-42 40-81 (110)
169 KOG1995|consensus 78.3 1.6 3.5E-05 34.1 2.0 42 12-53 113-154 (351)
170 PF05172 Nup35_RRM: Nup53/35/4 78.1 2 4.4E-05 27.7 2.2 30 55-85 6-35 (100)
171 PF08777 RRM_3: RNA binding mo 77.3 2.6 5.7E-05 27.1 2.6 29 4-35 29-57 (105)
172 KOG1365|consensus 77.1 17 0.00038 29.2 7.5 71 11-82 98-188 (508)
173 PF04059 RRM_2: RNA recognitio 76.9 5.8 0.00012 25.4 4.0 38 56-94 2-41 (97)
174 KOG0128|consensus 76.6 0.24 5.2E-06 42.5 -3.1 69 16-85 615-697 (881)
175 KOG2193|consensus 76.1 1.6 3.4E-05 35.4 1.5 24 56-79 2-25 (584)
176 KOG4211|consensus 73.5 5.5 0.00012 32.6 3.9 27 56-82 282-308 (510)
177 KOG4676|consensus 67.8 3.7 8E-05 32.9 1.8 29 57-85 9-37 (479)
178 PF03467 Smg4_UPF3: Smg-4/UPF3 67.2 2.9 6.2E-05 29.4 1.0 28 55-82 7-35 (176)
179 KOG4307|consensus 66.7 7.1 0.00015 33.6 3.3 83 1-84 335-463 (944)
180 KOG2891|consensus 65.0 3.4 7.3E-05 32.0 1.1 37 56-92 150-198 (445)
181 PF10309 DUF2414: Protein of u 64.9 7.2 0.00016 23.1 2.3 18 18-35 45-62 (62)
182 PF01071 GARS_A: Phosphoribosy 64.5 12 0.00025 26.9 3.8 30 6-35 41-70 (194)
183 KOG2416|consensus 64.0 9.9 0.00022 32.1 3.7 37 15-51 481-520 (718)
184 PF04026 SpoVG: SpoVG; InterP 62.5 9.5 0.00021 23.8 2.6 24 1-24 1-27 (84)
185 PHA02531 20 portal vertex prot 61.2 8.8 0.00019 31.5 2.9 38 54-96 277-317 (514)
186 PF14111 DUF4283: Domain of un 59.0 2.2 4.8E-05 28.1 -0.7 72 13-85 53-135 (153)
187 KOG2068|consensus 58.5 4 8.6E-05 31.7 0.5 34 18-51 128-161 (327)
188 PF14112 DUF4284: Domain of un 57.2 12 0.00025 24.8 2.5 18 57-77 3-20 (122)
189 KOG4849|consensus 56.0 20 0.00043 28.6 3.9 40 11-50 120-160 (498)
190 KOG0804|consensus 55.8 19 0.00041 29.4 3.9 41 2-42 101-142 (493)
191 KOG1995|consensus 54.7 8.1 0.00017 30.3 1.6 29 55-83 66-94 (351)
192 PF08206 OB_RNB: Ribonuclease 54.0 11 0.00023 21.5 1.7 12 13-24 6-17 (58)
193 PF10915 DUF2709: Protein of u 51.0 28 0.0006 25.5 3.7 42 21-63 48-92 (238)
194 PRK09937 stationary phase/star 49.8 16 0.00034 22.2 2.0 18 7-24 5-22 (74)
195 COG2828 Uncharacterized protei 49.2 21 0.00046 28.0 3.1 86 5-99 7-97 (378)
196 PRK09507 cspE cold shock prote 48.9 16 0.00034 21.7 1.9 17 8-24 8-24 (69)
197 PRK14998 cold shock-like prote 48.6 16 0.00035 22.0 2.0 17 8-24 6-22 (73)
198 PRK13259 regulatory protein Sp 47.7 25 0.00054 22.5 2.8 24 1-24 1-27 (94)
199 smart00738 NGN In Spt5p, this 47.6 32 0.00069 21.1 3.3 23 16-38 60-82 (106)
200 PRK10943 cold shock-like prote 47.4 16 0.00036 21.6 1.9 17 8-24 8-24 (69)
201 PRK15464 cold shock-like prote 46.5 16 0.00035 21.9 1.7 18 7-24 8-25 (70)
202 PF03439 Spt5-NGN: Early trans 46.3 66 0.0014 19.6 4.6 31 11-41 40-70 (84)
203 TIGR02381 cspD cold shock doma 45.1 21 0.00045 21.0 2.1 17 8-24 6-22 (68)
204 PRK15463 cold shock-like prote 45.1 19 0.00041 21.5 1.9 18 7-24 8-25 (70)
205 KOG1855|consensus 44.0 8.4 0.00018 31.2 0.3 37 2-38 257-309 (484)
206 PF00403 HMA: Heavy-metal-asso 43.0 58 0.0013 17.9 4.9 46 27-80 15-60 (62)
207 cd04458 CSP_CDS Cold-Shock Pro 42.8 24 0.00052 20.0 2.1 17 8-24 5-21 (65)
208 PF15407 Spo7_2_N: Sporulation 42.1 11 0.00025 22.6 0.6 18 54-71 26-43 (67)
209 PF11411 DNA_ligase_IV: DNA li 41.8 15 0.00033 19.5 1.0 17 64-80 18-34 (36)
210 PRK10354 RNA chaperone/anti-te 41.6 23 0.00051 20.9 1.9 17 8-24 9-25 (70)
211 COG2088 SpoVG Uncharacterized 41.6 28 0.00062 22.2 2.3 25 1-25 1-28 (95)
212 PRK09890 cold shock protein Cs 41.1 24 0.00051 21.0 1.9 17 8-24 9-25 (70)
213 KOG2591|consensus 40.9 12 0.00025 31.4 0.6 27 19-45 216-244 (684)
214 PRK11425 PTS system N-acetylga 40.5 1.2E+02 0.0026 20.8 5.6 17 17-33 78-94 (157)
215 PRK08559 nusG transcription an 40.0 67 0.0015 21.8 4.2 29 10-38 41-69 (153)
216 PF00313 CSD: 'Cold-shock' DNA 39.4 34 0.00074 19.5 2.4 17 9-25 6-22 (66)
217 PF10567 Nab6_mRNP_bdg: RNA-re 39.4 17 0.00036 28.1 1.2 32 55-86 15-46 (309)
218 PF05036 SPOR: Sporulation rel 38.7 45 0.00097 18.8 2.8 56 19-76 9-64 (76)
219 PF02571 CbiJ: Precorrin-6x re 38.6 73 0.0016 23.5 4.5 76 17-98 110-207 (249)
220 PF12091 DUF3567: Protein of u 38.2 20 0.00044 22.6 1.3 59 13-82 6-77 (85)
221 cd00027 BRCT Breast Cancer Sup 37.4 38 0.00083 18.0 2.3 26 57-82 3-28 (72)
222 TIGR00387 glcD glycolate oxida 37.1 76 0.0016 24.8 4.6 35 2-36 162-198 (413)
223 COG0018 ArgS Arginyl-tRNA synt 36.6 1E+02 0.0022 25.7 5.5 42 41-82 115-156 (577)
224 PF07879 PHB_acc_N: PHB/PHA ac 36.5 42 0.00092 20.0 2.4 38 54-96 7-44 (64)
225 PRK09756 PTS system N-acetylga 35.5 1.5E+02 0.0032 20.4 5.7 17 17-33 81-97 (158)
226 cd06257 DnaJ DnaJ domain or J- 35.4 33 0.00073 18.3 1.8 18 62-79 7-24 (55)
227 PF07230 Peptidase_S80: Bacter 35.2 34 0.00074 28.1 2.4 38 54-96 274-314 (501)
228 KOG2416|consensus 35.1 10 0.00023 31.9 -0.5 42 54-97 443-484 (718)
229 PF06613 KorB_C: KorB C-termin 34.9 31 0.00068 20.4 1.6 18 7-24 23-40 (60)
230 PF00226 DnaJ: DnaJ domain; I 33.9 36 0.00077 19.0 1.8 17 62-78 7-23 (64)
231 KOG4410|consensus 33.8 56 0.0012 25.5 3.3 27 56-82 331-357 (396)
232 PLN02805 D-lactate dehydrogena 33.7 79 0.0017 26.2 4.4 35 2-36 296-332 (555)
233 PF10384 Scm3: Centromere prot 33.7 11 0.00025 21.9 -0.3 25 71-96 17-43 (58)
234 PF08156 NOP5NT: NOP5NT (NUC12 33.6 29 0.00062 20.6 1.4 19 17-35 46-64 (67)
235 KOG4849|consensus 33.6 22 0.00047 28.4 1.0 26 56-81 81-106 (498)
236 KOG4426|consensus 33.1 30 0.00066 28.6 1.8 65 16-80 155-225 (656)
237 PF03467 Smg4_UPF3: Smg-4/UPF3 33.0 64 0.0014 22.5 3.3 27 15-41 55-81 (176)
238 smart00195 DSPc Dual specifici 32.9 28 0.0006 22.4 1.4 26 56-83 6-31 (138)
239 COG5594 Uncharacterized integr 32.2 63 0.0014 28.3 3.6 36 13-48 355-391 (827)
240 PF11823 DUF3343: Protein of u 32.1 69 0.0015 18.7 2.9 25 16-40 2-26 (73)
241 KOG3397|consensus 31.9 22 0.00048 25.8 0.8 30 3-32 86-115 (225)
242 PRK11230 glycolate oxidase sub 31.9 92 0.002 25.3 4.4 35 2-36 219-255 (499)
243 COG1278 CspC Cold shock protei 31.7 32 0.0007 20.7 1.4 18 8-25 6-23 (67)
244 smart00271 DnaJ DnaJ molecular 31.6 42 0.0009 18.3 1.8 18 62-79 8-25 (60)
245 PF00054 Laminin_G_1: Laminin 31.4 23 0.0005 22.9 0.8 9 56-64 93-101 (131)
246 TIGR00405 L26e_arch ribosomal 31.2 57 0.0012 21.6 2.7 31 8-38 31-61 (145)
247 cd04485 DnaE_OBF DnaE_OBF: A s 30.9 84 0.0018 17.6 3.2 26 3-28 6-31 (84)
248 TIGR03293 PhnG_redo phosphonat 30.7 1E+02 0.0022 21.0 3.9 30 1-30 61-90 (144)
249 PF14893 PNMA: PNMA 30.1 36 0.00078 26.5 1.8 27 56-82 19-49 (331)
250 PF06754 PhnG: Phosphonate met 30.1 97 0.0021 21.1 3.7 30 1-30 62-91 (146)
251 PF13689 DUF4154: Domain of un 29.7 1.7E+02 0.0037 19.3 5.8 49 15-64 26-78 (145)
252 PF10567 Nab6_mRNP_bdg: RNA-re 29.1 1.4E+02 0.003 23.2 4.7 35 2-36 173-212 (309)
253 cd00127 DSPc Dual specificity 28.9 32 0.00068 21.9 1.1 19 56-74 7-25 (139)
254 KOG0862|consensus 27.5 32 0.0007 25.3 1.0 14 12-25 106-119 (216)
255 smart00457 MACPF membrane-atta 26.3 27 0.00059 24.3 0.5 23 61-83 31-53 (194)
256 TIGR02938 nifL_nitrog nitrogen 26.3 2.1E+02 0.0045 21.5 5.3 39 44-82 412-450 (494)
257 COG4191 Signal transduction hi 25.9 2.1E+02 0.0046 24.3 5.5 50 30-81 508-557 (603)
258 PRK11006 phoR phosphate regulo 25.7 1.7E+02 0.0038 22.3 4.9 40 43-82 337-376 (430)
259 PF05573 NosL: NosL; InterPro 25.4 91 0.002 21.0 2.9 28 13-40 112-139 (149)
260 smart00703 NRF N-terminal doma 25.2 31 0.00066 22.0 0.5 26 56-81 70-96 (110)
261 PF12631 GTPase_Cys_C: Catalyt 25.1 60 0.0013 19.2 1.8 15 65-79 58-72 (73)
262 PF13600 DUF4140: N-terminal d 25.1 31 0.00068 21.5 0.6 24 55-80 23-46 (104)
263 COG5584 Predicted small secret 24.7 42 0.0009 21.8 1.1 23 61-83 28-50 (103)
264 KOG3152|consensus 24.1 14 0.00031 28.0 -1.3 27 18-44 131-157 (278)
265 PF10281 Ish1: Putative stress 24.1 48 0.001 17.1 1.1 19 65-83 2-20 (38)
266 PF02518 HATPase_c: Histidine 23.9 1.6E+02 0.0034 17.8 3.6 40 43-82 25-64 (111)
267 COG1337 CRISPR system related 23.9 47 0.001 24.8 1.4 13 13-25 200-212 (249)
268 PF08266 Cadherin_2: Cadherin- 23.8 68 0.0015 19.7 1.9 39 57-95 14-54 (84)
269 PRK15053 dpiB sensor histidine 23.8 2E+02 0.0043 22.6 5.0 39 43-81 456-494 (545)
270 PF01823 MACPF: MAC/Perforin d 23.5 31 0.00068 23.6 0.4 25 60-84 53-80 (212)
271 PF02210 Laminin_G_2: Laminin 23.2 58 0.0012 19.9 1.5 28 55-82 93-120 (128)
272 KOG3432|consensus 22.2 68 0.0015 21.4 1.7 34 56-91 36-69 (121)
273 COG0001 HemL Glutamate-1-semia 22.0 1.1E+02 0.0024 24.8 3.2 28 68-98 186-214 (432)
274 COG3194 DAL3 Ureidoglycolate h 21.7 42 0.00091 23.7 0.7 15 73-87 11-25 (168)
275 TIGR01848 PHA_reg_PhaR polyhyd 21.5 1.1E+02 0.0023 20.2 2.5 38 54-96 7-44 (107)
276 PF00398 RrnaAD: Ribosomal RNA 21.5 56 0.0012 23.9 1.3 27 56-82 98-126 (262)
277 PF13773 DUF4170: Domain of un 21.3 91 0.002 18.9 2.0 25 21-45 31-55 (69)
278 KOG4019|consensus 21.1 1.6E+02 0.0034 21.4 3.5 39 13-51 49-88 (193)
279 cd04492 YhaM_OBF_like YhaM_OBF 21.1 1.6E+02 0.0034 16.7 3.1 27 2-28 5-31 (83)
280 KOG3938|consensus 20.9 1.3E+02 0.0028 23.3 3.1 30 13-42 146-184 (334)
281 COG1556 Uncharacterized conser 20.9 72 0.0016 23.5 1.8 37 54-92 181-217 (218)
282 KOG4574|consensus 20.7 57 0.0012 28.9 1.4 40 14-53 333-374 (1007)
283 COG1419 FlhF Flagellar GTP-bin 20.5 3.3E+02 0.0072 21.9 5.5 62 23-90 267-345 (407)
284 PHA02097 hypothetical protein 20.5 99 0.0021 17.8 1.9 19 3-21 40-58 (59)
285 TIGR00006 S-adenosyl-methyltra 20.5 44 0.00096 25.6 0.6 19 65-83 139-157 (305)
286 COG0642 BaeS Signal transducti 20.4 2.8E+02 0.006 19.1 4.7 28 55-82 259-286 (336)
287 COG2469 Uncharacterized conser 20.3 2E+02 0.0042 22.1 4.0 63 16-82 143-206 (284)
288 PRK00050 16S rRNA m(4)C1402 me 20.1 46 0.00099 25.4 0.7 19 65-83 137-155 (296)
No 1
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.87 E-value=9.2e-22 Score=150.63 Aligned_cols=95 Identities=18% Similarity=0.337 Sum_probs=85.4
Q ss_pred ceEEEEEeeCC---CCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecCC----CCceEEEEcCCCCCCChHHHHh
Q psy11608 2 VMYFVDIKKQS---SASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKS----LATTCVWVDGVAGKCGTGEHNR 74 (99)
Q Consensus 2 ~I~~v~ik~~~---~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k~----~~~~~lfVg~l~~~~s~~~L~~ 74 (99)
+|++|.|.+|. +++|||||+|.++++|++|+++|||..+.+++|+|.|+++ ...++|||+|||.++++++|++
T Consensus 133 ~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~a~p~~~~~~~~~lfV~nLp~~vtee~L~~ 212 (346)
T TIGR01659 133 PINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSYARPGGESIKDTNLYVTNLPRTITDDQLDT 212 (346)
T ss_pred CEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeecccccccccccceeEEeCCCCcccHHHHHH
Confidence 58899998874 7999999999999999999999999999999999998764 3467899999999999999999
Q ss_pred hhcCCCceeeeeEEEEcCCCCCC
Q psy11608 75 VNLGYGKSLATTCVWVDGVAGKC 97 (99)
Q Consensus 75 ~F~~fG~i~~~~~v~~d~~~g~~ 97 (99)
+|++||+|+.+ .++.|+.+|++
T Consensus 213 ~F~~fG~V~~v-~i~~d~~tg~~ 234 (346)
T TIGR01659 213 IFGKYGQIVQK-NILRDKLTGTP 234 (346)
T ss_pred HHHhcCCEEEE-EEeecCCCCcc
Confidence 99999999875 55589888875
No 2
>KOG0148|consensus
Probab=99.84 E-value=8.5e-21 Score=140.87 Aligned_cols=90 Identities=14% Similarity=0.301 Sum_probs=79.3
Q ss_pred ceEEEEEeeCC---CCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecCC-------------------CC-ceEE
Q psy11608 2 VMYFVDIKKQS---SASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKS-------------------LA-TTCV 58 (99)
Q Consensus 2 ~I~~v~ik~~~---~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k~-------------------~~-~~~l 58 (99)
-|.+..|.||. +|+|||||.|-+.++|++||.+|||.+||+|.||.+|+.- .| ++.+
T Consensus 88 evS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATRKp~e~n~~~ltfdeV~NQssp~NtsV 167 (321)
T KOG0148|consen 88 EVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATRKPSEMNGKPLTFDEVYNQSSPDNTSV 167 (321)
T ss_pred ccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeeccccccCccccCCCCccHHHHhccCCCCCceE
Confidence 37788899996 8999999999999999999999999999999999998632 12 5679
Q ss_pred EEcCCCCCCChHHHHhhhcCCCceeeeeEEEEcC
Q psy11608 59 WVDGVAGKCGTGEHNRVNLGYGKSLATTCVWVDG 92 (99)
Q Consensus 59 fVg~l~~~~s~~~L~~~F~~fG~i~~~~~v~~d~ 92 (99)
||||+++-++|++|++.|++||+|.++ +|.-|+
T Consensus 168 Y~G~I~~~lte~~mr~~Fs~fG~I~EV-RvFk~q 200 (321)
T KOG0148|consen 168 YVGNIASGLTEDLMRQTFSPFGPIQEV-RVFKDQ 200 (321)
T ss_pred EeCCcCccccHHHHHHhcccCCcceEE-EEeccc
Confidence 999999999999999999999999886 554554
No 3
>KOG0145|consensus
Probab=99.84 E-value=4.8e-21 Score=142.18 Aligned_cols=95 Identities=15% Similarity=0.353 Sum_probs=88.1
Q ss_pred ceEEEEEeeCC---CCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecCCC----CceEEEEcCCCCCCChHHHHh
Q psy11608 2 VMYFVDIKKQS---SASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKSL----ATTCVWVDGVAGKCGTGEHNR 74 (99)
Q Consensus 2 ~I~~v~ik~~~---~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k~~----~~~~lfVg~l~~~~s~~~L~~ 74 (99)
-|++|.+.||. +|.|||||.|.+++||++|+..+||..+..|.|+|.|+++. ...+|||.|||.+++..+|++
T Consensus 67 eiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyARPSs~~Ik~aNLYvSGlPktMtqkelE~ 146 (360)
T KOG0145|consen 67 EIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYARPSSDSIKDANLYVSGLPKTMTQKELEQ 146 (360)
T ss_pred ceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEeccCChhhhcccceEEecCCccchHHHHHH
Confidence 48999999995 99999999999999999999999999999999999999875 468999999999999999999
Q ss_pred hhcCCCceeeeeEEEEcCCCCCC
Q psy11608 75 VNLGYGKSLATTCVWVDGVAGKC 97 (99)
Q Consensus 75 ~F~~fG~i~~~~~v~~d~~~g~~ 97 (99)
+|++||.|+. +++++|..||-.
T Consensus 147 iFs~fGrIIt-SRiL~dqvtg~s 168 (360)
T KOG0145|consen 147 IFSPFGRIIT-SRILVDQVTGLS 168 (360)
T ss_pred HHHHhhhhhh-hhhhhhccccee
Confidence 9999999974 788899999864
No 4
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.83 E-value=6e-20 Score=137.86 Aligned_cols=94 Identities=14% Similarity=0.330 Sum_probs=83.6
Q ss_pred ceEEEEEeeCC---CCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecCCC----CceEEEEcCCCCCCChHHHHh
Q psy11608 2 VMYFVDIKKQS---SASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKSL----ATTCVWVDGVAGKCGTGEHNR 74 (99)
Q Consensus 2 ~I~~v~ik~~~---~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k~~----~~~~lfVg~l~~~~s~~~L~~ 74 (99)
+|.+|.|++|. +++|||||+|.+.++|++|++.|||..+.+++|+|.|+++. ...+|||+|||+++++++|++
T Consensus 29 ~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~~~~~~~~~~~l~v~~l~~~~~~~~l~~ 108 (352)
T TIGR01661 29 EIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYARPSSDSIKGANLYVSGLPKTMTQHELES 108 (352)
T ss_pred CEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeecccccccccceEEECCccccCCHHHHHH
Confidence 68999998774 79999999999999999999999999999999999998754 356899999999999999999
Q ss_pred hhcCCCceeeeeEEEEcCCCCC
Q psy11608 75 VNLGYGKSLATTCVWVDGVAGK 96 (99)
Q Consensus 75 ~F~~fG~i~~~~~v~~d~~~g~ 96 (99)
+|++||+|..+ .+..|..+|.
T Consensus 109 ~f~~~G~i~~~-~~~~~~~~~~ 129 (352)
T TIGR01661 109 IFSPFGQIITS-RILSDNVTGL 129 (352)
T ss_pred HHhccCCEEEE-EEEecCCCCC
Confidence 99999999765 5557876664
No 5
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.82 E-value=9e-20 Score=147.79 Aligned_cols=95 Identities=15% Similarity=0.242 Sum_probs=82.9
Q ss_pred ceEEEEEeeCC---CCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecCCC---------------CceEEEEcCC
Q psy11608 2 VMYFVDIKKQS---SASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKSL---------------ATTCVWVDGV 63 (99)
Q Consensus 2 ~I~~v~ik~~~---~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k~~---------------~~~~lfVg~l 63 (99)
+|.+|.|.+|. +++|||||+|.+.++|++|+++|||..++|++|+|++.... ..++|||+||
T Consensus 133 ~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp~~~p~a~~~~~~~~~~~~~~~rLfVgnL 212 (612)
T TIGR01645 133 PIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSNMPQAQPIIDMVQEEAKKFNRIYVASV 212 (612)
T ss_pred CEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecccccccccccccccccccccccceEEeecC
Confidence 68899998874 79999999999999999999999999999999999764321 2468999999
Q ss_pred CCCCChHHHHhhhcCCCceeeeeEEEEcCCCCCC
Q psy11608 64 AGKCGTGEHNRVNLGYGKSLATTCVWVDGVAGKC 97 (99)
Q Consensus 64 ~~~~s~~~L~~~F~~fG~i~~~~~v~~d~~~g~~ 97 (99)
|+++++++|+++|++||+|.++ .+..|+.+|++
T Consensus 213 p~~vteedLk~lFs~FG~I~sv-rl~~D~~tgks 245 (612)
T TIGR01645 213 HPDLSETDIKSVFEAFGEIVKC-QLARAPTGRGH 245 (612)
T ss_pred CCCCCHHHHHHHHhhcCCeeEE-EEEecCCCCCc
Confidence 9999999999999999999875 56688877753
No 6
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.78 E-value=4.2e-18 Score=127.84 Aligned_cols=96 Identities=10% Similarity=0.224 Sum_probs=79.7
Q ss_pred ceEEEEEeeCC---CCCCeEEEEeCCHHHHHHHHHhhCCeEeCC--eEEEEeecCCCC----------------------
Q psy11608 2 VMYFVDIKKQS---SASAFAFVQYTDIASVVRAMRAMDGEYVGH--NRVNLGYGKSLA---------------------- 54 (99)
Q Consensus 2 ~I~~v~ik~~~---~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~--~~i~v~~~k~~~---------------------- 54 (99)
.|..+.+.++. .++|||||+|.+.++|++|++.|||..+.+ .++++.++....
T Consensus 115 ~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (352)
T TIGR01661 115 QIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVKFANNPSSSNSKGLLSQLEAVQNPQTTRV 194 (352)
T ss_pred CEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECCCCCcCCchhcCchhhcccCcccCCC
Confidence 46777887764 689999999999999999999999998876 567776642100
Q ss_pred --------------------------------------------------------------------------ceEEEE
Q psy11608 55 --------------------------------------------------------------------------TTCVWV 60 (99)
Q Consensus 55 --------------------------------------------------------------------------~~~lfV 60 (99)
..+|||
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV 274 (352)
T TIGR01661 195 PLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQHAAQRASPPATDGQTAGLAAGAQIAASDGAGYCIFV 274 (352)
T ss_pred CccccccccCCCCccCcccccccCcchhhhhhhhhhhhcccccccccccCCCccccccccccccCCCCCCCCCCCcEEEE
Confidence 115999
Q ss_pred cCCCCCCChHHHHhhhcCCCceeeeeEEEEcCCCCCCC
Q psy11608 61 DGVAGKCGTGEHNRVNLGYGKSLATTCVWVDGVAGKCG 98 (99)
Q Consensus 61 g~l~~~~s~~~L~~~F~~fG~i~~~~~v~~d~~~g~~~ 98 (99)
+|||+++++++|+++|++||+|+++ .++.|+.||.|+
T Consensus 275 ~NL~~~~~e~~L~~~F~~fG~v~~v-~i~~d~~t~~sk 311 (352)
T TIGR01661 275 YNLSPDTDETVLWQLFGPFGAVQNV-KIIRDLTTNQCK 311 (352)
T ss_pred eCCCCCCCHHHHHHHHHhCCCeEEE-EEeEcCCCCCcc
Confidence 9999999999999999999999886 677999888884
No 7
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.75 E-value=2.1e-17 Score=128.30 Aligned_cols=94 Identities=15% Similarity=0.203 Sum_probs=80.9
Q ss_pred ceEEEEEeeCC---CCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecCC----------------CCceEEEEcC
Q psy11608 2 VMYFVDIKKQS---SASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKS----------------LATTCVWVDG 62 (99)
Q Consensus 2 ~I~~v~ik~~~---~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k~----------------~~~~~lfVg~ 62 (99)
.|.+|.|.+|. .++|||||+|.+.++|++|+. |+|..+.+++|.|.+.+. ..+.+|||+|
T Consensus 115 ~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~p~~~~l~v~n 193 (457)
T TIGR01622 115 KVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQSSQAEKNRAAKAATHQPGDIPNFLKLYVGN 193 (457)
T ss_pred CeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEeecchhhhhhhhcccccCCCCCCCCEEEEcC
Confidence 58899998874 789999999999999999996 999999999998876421 1247899999
Q ss_pred CCCCCChHHHHhhhcCCCceeeeeEEEEcCCCCCC
Q psy11608 63 VAGKCGTGEHNRVNLGYGKSLATTCVWVDGVAGKC 97 (99)
Q Consensus 63 l~~~~s~~~L~~~F~~fG~i~~~~~v~~d~~~g~~ 97 (99)
||.++++++|+++|++||.|..+ .+..|..+|++
T Consensus 194 l~~~~te~~l~~~f~~~G~i~~v-~~~~d~~~g~~ 227 (457)
T TIGR01622 194 LHFNITEQELRQIFEPFGDIEDV-QLHRDPETGRS 227 (457)
T ss_pred CCCCCCHHHHHHHHHhcCCeEEE-EEEEcCCCCcc
Confidence 99999999999999999999876 55688888765
No 8
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.75 E-value=1.3e-17 Score=132.85 Aligned_cols=90 Identities=14% Similarity=0.233 Sum_probs=79.7
Q ss_pred ceEEEEEeeCC---CCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecCCC------CceEEEEcCCCCCCChHHH
Q psy11608 2 VMYFVDIKKQS---SASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKSL------ATTCVWVDGVAGKCGTGEH 72 (99)
Q Consensus 2 ~I~~v~ik~~~---~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k~~------~~~~lfVg~l~~~~s~~~L 72 (99)
+|++|.|.+|. +|+|||||+|.+.++|++|++.+|+..+.+++|+|.|.+.. ...+|||+|||.++++++|
T Consensus 26 ~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~~~~~~~~~~~vfV~nLp~~~~~~~L 105 (562)
T TIGR01628 26 PVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRDPSLRRSGVGNIFVKNLDKSVDNKAL 105 (562)
T ss_pred CEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccccccccccCCCceEEcCCCccCCHHHH
Confidence 68999999985 68999999999999999999999999999999999987532 2467999999999999999
Q ss_pred HhhhcCCCceeeeeEEEEcC
Q psy11608 73 NRVNLGYGKSLATTCVWVDG 92 (99)
Q Consensus 73 ~~~F~~fG~i~~~~~v~~d~ 92 (99)
+++|++||.|+++ .+..|.
T Consensus 106 ~~~F~~~G~i~~~-~i~~~~ 124 (562)
T TIGR01628 106 FDTFSKFGNILSC-KVATDE 124 (562)
T ss_pred HHHHHhcCCccee-EeeecC
Confidence 9999999999876 454665
No 9
>KOG0131|consensus
Probab=99.73 E-value=4.5e-18 Score=120.34 Aligned_cols=96 Identities=8% Similarity=0.111 Sum_probs=84.4
Q ss_pred ceEEEEEeeCC---CCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecCCC-----CceEEEEcCCCCCCChHHHH
Q psy11608 2 VMYFVDIKKQS---SASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKSL-----ATTCVWVDGVAGKCGTGEHN 73 (99)
Q Consensus 2 ~I~~v~ik~~~---~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k~~-----~~~~lfVg~l~~~~s~~~L~ 73 (99)
||.++-|=+|. ..+||||++|.++++|+.|++-||...+.|++||++.+... -+.+||||||.+.+++..|.
T Consensus 35 pVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas~~~~nl~vganlfvgNLd~~vDe~~L~ 114 (203)
T KOG0131|consen 35 PVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKASAHQKNLDVGANLFVGNLDPEVDEKLLY 114 (203)
T ss_pred ceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEecccccccccccccccccccCcchhHHHHH
Confidence 56677776664 69999999999999999999999999999999999876521 24689999999999999999
Q ss_pred hhhcCCCceeeeeEEEEcCCCCCC
Q psy11608 74 RVNLGYGKSLATTCVWVDGVAGKC 97 (99)
Q Consensus 74 ~~F~~fG~i~~~~~v~~d~~~g~~ 97 (99)
+.||.||.++....+..|..||+-
T Consensus 115 dtFsafG~l~~~P~i~rd~~tg~~ 138 (203)
T KOG0131|consen 115 DTFSAFGVLISPPKIMRDPDTGNP 138 (203)
T ss_pred HHHHhccccccCCcccccccCCCC
Confidence 999999999988899999988764
No 10
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.71 E-value=1.5e-16 Score=126.83 Aligned_cols=93 Identities=16% Similarity=0.299 Sum_probs=79.3
Q ss_pred ceEEEEEeeCC--CCCCeEEEEeCCHHHHHHHHHhhCCeEeC----CeEEEEeecCCC----------------------
Q psy11608 2 VMYFVDIKKQS--SASAFAFVQYTDIASVVRAMRAMDGEYVG----HNRVNLGYGKSL---------------------- 53 (99)
Q Consensus 2 ~I~~v~ik~~~--~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~----~~~i~v~~~k~~---------------------- 53 (99)
.|+++.+.++. .++|||||.|.+.++|.+|++.|||..+. ++.+.+.+++..
T Consensus 204 ~i~~~~i~~~~~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~~~~g~~l~v~~a~~k~er~~~~~~~~~~~~~~~~~~~ 283 (562)
T TIGR01628 204 EITSAAVMKDGSGRSRGFAFVNFEKHEDAAKAVEEMNGKKIGLAKEGKKLYVGRAQKRAEREAELRRKFEELQQERKMKA 283 (562)
T ss_pred CEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCcEecccccceeeEeecccChhhhHHHHHhhHHhhhhhhhccc
Confidence 47888888875 78999999999999999999999999999 999988765321
Q ss_pred CceEEEEcCCCCCCChHHHHhhhcCCCceeeeeEEEEcCCCCC
Q psy11608 54 ATTCVWVDGVAGKCGTGEHNRVNLGYGKSLATTCVWVDGVAGK 96 (99)
Q Consensus 54 ~~~~lfVg~l~~~~s~~~L~~~F~~fG~i~~~~~v~~d~~~g~ 96 (99)
...+|||+|||+++++++|+++|++||+|.++ .+..| .+|.
T Consensus 284 ~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~-~i~~d-~~g~ 324 (562)
T TIGR01628 284 QGVNLYVKNLDDTVTDEKLRELFSECGEITSA-KVMLD-EKGV 324 (562)
T ss_pred CCCEEEEeCCCCccCHHHHHHHHHhcCCeEEE-EEEEC-CCCC
Confidence 24679999999999999999999999999876 55577 3454
No 11
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.70 E-value=1.5e-16 Score=124.75 Aligned_cols=90 Identities=16% Similarity=0.212 Sum_probs=73.9
Q ss_pred eEEEEEeeCCCCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecCC------------------------------
Q psy11608 3 MYFVDIKKQSSASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKS------------------------------ 52 (99)
Q Consensus 3 I~~v~ik~~~~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k~------------------------------ 52 (99)
|.++.+. .++|||||+|.+.++|..|+ +|||..+.+++|+|...+.
T Consensus 214 v~~~~~~---~~kg~afVeF~~~e~A~~Al-~l~g~~~~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (509)
T TIGR01642 214 VSSVNIN---KEKNFAFLEFRTVEEATFAM-ALDSIIYSNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNST 289 (509)
T ss_pred eEEEEEC---CCCCEEEEEeCCHHHHhhhh-cCCCeEeeCceeEecCccccCCccccCCCCCCCCCcccccccccccccc
Confidence 4455443 56899999999999999999 5999999999999863210
Q ss_pred ---CCceEEEEcCCCCCCChHHHHhhhcCCCceeeeeEEEEcCCCCCC
Q psy11608 53 ---LATTCVWVDGVAGKCGTGEHNRVNLGYGKSLATTCVWVDGVAGKC 97 (99)
Q Consensus 53 ---~~~~~lfVg~l~~~~s~~~L~~~F~~fG~i~~~~~v~~d~~~g~~ 97 (99)
.+.++|||||||.++++++|+++|+.||.|..+ .++.|..+|++
T Consensus 290 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~-~~~~~~~~g~~ 336 (509)
T TIGR01642 290 TVLDSKDRIYIGNLPLYLGEDQIKELLESFGDLKAF-NLIKDIATGLS 336 (509)
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEE-EEEecCCCCCc
Confidence 113689999999999999999999999999776 55588888765
No 12
>KOG0124|consensus
Probab=99.70 E-value=5.2e-17 Score=125.26 Aligned_cols=93 Identities=15% Similarity=0.259 Sum_probs=81.6
Q ss_pred ceEEEEEeeCC---CCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecCCCC---------------ceEEEEcCC
Q psy11608 2 VMYFVDIKKQS---SASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKSLA---------------TTCVWVDGV 63 (99)
Q Consensus 2 ~I~~v~ik~~~---~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k~~~---------------~~~lfVg~l 63 (99)
||-+|++-=|+ .++|||||+|+-++.|+.|++.|||.++||+.|+|+.....| .++|||..+
T Consensus 139 PIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsNmpQAQpiID~vqeeAk~fnRiYVaSv 218 (544)
T KOG0124|consen 139 PIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSNMPQAQPIIDMVQEEAKKFNRIYVASV 218 (544)
T ss_pred CcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCCCcccchHHHHHHHHHHhhheEEeeec
Confidence 67788888776 899999999999999999999999999999999998765432 589999999
Q ss_pred CCCCChHHHHhhhcCCCceeeeeEEEEcCCCC
Q psy11608 64 AGKCGTGEHNRVNLGYGKSLATTCVWVDGVAG 95 (99)
Q Consensus 64 ~~~~s~~~L~~~F~~fG~i~~~~~v~~d~~~g 95 (99)
.++.||+||++.|+.||+|..+ .+.+++.++
T Consensus 219 HpDLSe~DiKSVFEAFG~I~~C-~LAr~pt~~ 249 (544)
T KOG0124|consen 219 HPDLSETDIKSVFEAFGEIVKC-QLARAPTGR 249 (544)
T ss_pred CCCccHHHHHHHHHhhcceeeE-EeeccCCCC
Confidence 9999999999999999999875 555766544
No 13
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.68 E-value=5.4e-16 Score=122.50 Aligned_cols=78 Identities=10% Similarity=0.080 Sum_probs=69.2
Q ss_pred ceEEEEEeeCCCCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecCC-----------------------------
Q psy11608 2 VMYFVDIKKQSSASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKS----------------------------- 52 (99)
Q Consensus 2 ~I~~v~ik~~~~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k~----------------------------- 52 (99)
.|.+|.|.++ ++|||||+|.+.++|++|++.|||..+.|++|+|.+++.
T Consensus 302 ~V~~vki~~~--~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~ 379 (481)
T TIGR01649 302 NVERVKFMKN--KKETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSKQQNVQPPREGQLDDGLTSYKDYSSSRNHRF 379 (481)
T ss_pred CeEEEEEEeC--CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcccccccCCCCCcCcCCCcccccccCCccccC
Confidence 5788888875 579999999999999999999999999999999976531
Q ss_pred ------------CCceEEEEcCCCCCCChHHHHhhhcCCCc
Q psy11608 53 ------------LATTCVWVDGVAGKCGTGEHNRVNLGYGK 81 (99)
Q Consensus 53 ------------~~~~~lfVg~l~~~~s~~~L~~~F~~fG~ 81 (99)
.|+++|||+|||.++++++|+++|+.||.
T Consensus 380 ~~~~~~~~~~~~~ps~~L~v~NLp~~~tee~L~~lF~~~G~ 420 (481)
T TIGR01649 380 KKPGSANKNNIQPPSATLHLSNIPLSVSEEDLKELFAENGV 420 (481)
T ss_pred CCcccccccccCCCCcEEEEecCCCCCCHHHHHHHHHhcCC
Confidence 13468999999999999999999999998
No 14
>KOG0123|consensus
Probab=99.66 E-value=5.9e-16 Score=119.62 Aligned_cols=90 Identities=12% Similarity=0.221 Sum_probs=82.2
Q ss_pred ceEEEEEeeCCCCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecCCCCceEEEEcCCCCCCChHHHHhhhcCCCc
Q psy11608 2 VMYFVDIKKQSSASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKSLATTCVWVDGVAGKCGTGEHNRVNLGYGK 81 (99)
Q Consensus 2 ~I~~v~ik~~~~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k~~~~~~lfVg~l~~~~s~~~L~~~F~~fG~ 81 (99)
++++|.+.+|..|.|||||.|.++++|++||++||...+.|++||+.|..-.|+. |||.||+++++..+|.+.|+.||+
T Consensus 24 ~v~s~rvc~d~tslgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd~~~-~~i~nl~~~~~~~~~~d~f~~~g~ 102 (369)
T KOG0123|consen 24 PVLSIRVCRDATSLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRDPSL-VFIKNLDESIDNKSLYDTFSEFGN 102 (369)
T ss_pred CceeEEEeecCCccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccCCce-eeecCCCcccCcHHHHHHHHhhcC
Confidence 6889999999889999999999999999999999999999999999998766655 999999999999999999999999
Q ss_pred eeeeeEEEEcCC
Q psy11608 82 SLATTCVWVDGV 93 (99)
Q Consensus 82 i~~~~~v~~d~~ 93 (99)
|+++ .|..|..
T Consensus 103 ilS~-kv~~~~~ 113 (369)
T KOG0123|consen 103 ILSC-KVATDEN 113 (369)
T ss_pred eeEE-EEEEcCC
Confidence 9986 5557664
No 15
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.64 E-value=3e-15 Score=118.30 Aligned_cols=89 Identities=16% Similarity=0.123 Sum_probs=73.6
Q ss_pred ceEEEEEeeCCCCCCeEEEEeCCHHHHHHHHHh--hCCeEeCCeEEEEeecCCC----------------CceEEEEcCC
Q psy11608 2 VMYFVDIKKQSSASAFAFVQYTDIASVVRAMRA--MDGEYVGHNRVNLGYGKSL----------------ATTCVWVDGV 63 (99)
Q Consensus 2 ~I~~v~ik~~~~s~gfaFV~F~~~~~a~~Ai~~--m~G~~i~~~~i~v~~~k~~----------------~~~~lfVg~l 63 (99)
+|++|.|.+ ++|||||+|.+.++|++|++. +++..++|++|+|.|+... ...+|||+||
T Consensus 28 ~V~~v~i~~---~k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~~~v~v~nl 104 (481)
T TIGR01649 28 PVSYVMMLP---GKRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYSTSQEIKRDGNSDFDSAGPNKVLRVIVENP 104 (481)
T ss_pred CeeEEEEEC---CCCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEecCCcccccCCCCcccCCCCCceEEEEEcCC
Confidence 578888875 579999999999999999997 4788999999999986421 1137999999
Q ss_pred CCCCChHHHHhhhcCCCceeeeeEEEEcCCC
Q psy11608 64 AGKCGTGEHNRVNLGYGKSLATTCVWVDGVA 94 (99)
Q Consensus 64 ~~~~s~~~L~~~F~~fG~i~~~~~v~~d~~~ 94 (99)
+.++++++|+++|++||+|.++ .+..+..+
T Consensus 105 ~~~vt~~~L~~~F~~~G~V~~v-~i~~~~~~ 134 (481)
T TIGR01649 105 MYPITLDVLYQIFNPYGKVLRI-VTFTKNNV 134 (481)
T ss_pred CCCCCHHHHHHHHhccCCEEEE-EEEecCCc
Confidence 9999999999999999999876 34455543
No 16
>KOG0109|consensus
Probab=99.60 E-value=1.9e-15 Score=113.43 Aligned_cols=80 Identities=24% Similarity=0.312 Sum_probs=73.9
Q ss_pred ceEEEEEeeCCCCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecCCC--CceEEEEcCCCCCCChHHHHhhhcCC
Q psy11608 2 VMYFVDIKKQSSASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKSL--ATTCVWVDGVAGKCGTGEHNRVNLGY 79 (99)
Q Consensus 2 ~I~~v~ik~~~~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k~~--~~~~lfVg~l~~~~s~~~L~~~F~~f 79 (99)
-|++|||.+ .||||+.+|...|+.||+.|+|..|++..|+|.-+|+. ++++|+|||+.+.++.++|+..|++|
T Consensus 28 kVlECDIvK-----NYgFVHiEdktaaedairNLhgYtLhg~nInVeaSksKsk~stkl~vgNis~tctn~ElRa~fe~y 102 (346)
T KOG0109|consen 28 KVLECDIVK-----NYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSKSKASTKLHVGNISPTCTNQELRAKFEKY 102 (346)
T ss_pred ceEeeeeec-----ccceEEeecccccHHHHhhcccceecceEEEEEeccccCCCccccccCCCCccccCHHHhhhhccc
Confidence 478999996 89999999999999999999999999999999876654 88999999999999999999999999
Q ss_pred Cceeeee
Q psy11608 80 GKSLATT 86 (99)
Q Consensus 80 G~i~~~~ 86 (99)
|+|++..
T Consensus 103 gpviecd 109 (346)
T KOG0109|consen 103 GPVIECD 109 (346)
T ss_pred CCceeee
Confidence 9998753
No 17
>KOG0144|consensus
Probab=99.56 E-value=3.8e-15 Score=116.28 Aligned_cols=95 Identities=16% Similarity=0.306 Sum_probs=79.8
Q ss_pred ceEEEEEeeCC---CCCCeEEEEeCCHHHHHHHHHhhCCe-EeCC--eEEEEeecCCC-----CceEEEEcCCCCCCChH
Q psy11608 2 VMYFVDIKKQS---SASAFAFVQYTDIASVVRAMRAMDGE-YVGH--NRVNLGYGKSL-----ATTCVWVDGVAGKCGTG 70 (99)
Q Consensus 2 ~I~~v~ik~~~---~s~gfaFV~F~~~~~a~~Ai~~m~G~-~i~~--~~i~v~~~k~~-----~~~~lfVg~l~~~~s~~ 70 (99)
+|.+|.|.||. +|+|||||+|...++|.+|+.+++.. .+.| -+|.+.|+... .+++||||-|+..++|.
T Consensus 60 ~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqvk~Ad~E~er~~~e~KLFvg~lsK~~te~ 139 (510)
T KOG0144|consen 60 NVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQVKYADGERERIVEERKLFVGMLSKQCTEN 139 (510)
T ss_pred ceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceeecccchhhhccccchhhhhhhccccccHH
Confidence 68899999995 89999999999999999999998875 4544 57888887643 36789999999999999
Q ss_pred HHHhhhcCCCceeeeeEEEEcC--CCCCC
Q psy11608 71 EHNRVNLGYGKSLATTCVWVDG--VAGKC 97 (99)
Q Consensus 71 ~L~~~F~~fG~i~~~~~v~~d~--~~g~~ 97 (99)
+++++|++||.|+++ .+++|. .+.+|
T Consensus 140 evr~iFs~fG~Ied~-~ilrd~~~~sRGc 167 (510)
T KOG0144|consen 140 EVREIFSRFGHIEDC-YILRDPDGLSRGC 167 (510)
T ss_pred HHHHHHHhhCccchh-hheecccccccce
Confidence 999999999999886 555744 44455
No 18
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.55 E-value=3.5e-14 Score=114.93 Aligned_cols=79 Identities=10% Similarity=0.154 Sum_probs=69.2
Q ss_pred ceEEEEEeeC--CCCCCeEEEEeCCHHHHHHHHHhhCCeEeC-CeEEEEeecCCCCceEEEEcCCCCCCChHHHHhhhcC
Q psy11608 2 VMYFVDIKKQ--SSASAFAFVQYTDIASVVRAMRAMDGEYVG-HNRVNLGYGKSLATTCVWVDGVAGKCGTGEHNRVNLG 78 (99)
Q Consensus 2 ~I~~v~ik~~--~~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~-~~~i~v~~~k~~~~~~lfVg~l~~~~s~~~L~~~F~~ 78 (99)
+|.+|.|++| ++|||||||+|.+.++|++|++.|||..+. ++.+.+..+ ..+.+|||+|||.++++++|.+.|++
T Consensus 84 ~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S--~~~~rLFVgNLP~~~TeeeL~eeFsk 161 (578)
T TIGR01648 84 PIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCIS--VDNCRLFVGGIPKNKKREEILEEFSK 161 (578)
T ss_pred CEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccccc--ccCceeEeecCCcchhhHHHHHHhhc
Confidence 6889999988 489999999999999999999999999885 666666543 45688999999999999999999999
Q ss_pred CCce
Q psy11608 79 YGKS 82 (99)
Q Consensus 79 fG~i 82 (99)
++..
T Consensus 162 v~eg 165 (578)
T TIGR01648 162 VTEG 165 (578)
T ss_pred ccCC
Confidence 9764
No 19
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.54 E-value=5.4e-14 Score=113.84 Aligned_cols=74 Identities=14% Similarity=0.169 Sum_probs=64.6
Q ss_pred CCCCeEEEEeCCHHHHHHHHHhhCC--eEeCCeEEEEeecCCC---------CceEEEEcCCCCCCChHHHHhhhcCC--
Q psy11608 13 SASAFAFVQYTDIASVVRAMRAMDG--EYVGHNRVNLGYGKSL---------ATTCVWVDGVAGKCGTGEHNRVNLGY-- 79 (99)
Q Consensus 13 ~s~gfaFV~F~~~~~a~~Ai~~m~G--~~i~~~~i~v~~~k~~---------~~~~lfVg~l~~~~s~~~L~~~F~~f-- 79 (99)
+++|||||+|.+.++|..|++.|+. ..+.++.|+|.|+.+. +.++|||+|||.++++++|+++|++|
T Consensus 180 KnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~VdwA~p~~~~d~~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~ 259 (578)
T TIGR01648 180 KNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIAVDWAEPEEEVDEDVMAKVKILYVRNLMTTTTEEIIEKSFSEFKP 259 (578)
T ss_pred ccCceEEEEcCCHHHHHHHHHHhhccceEecCceEEEEeecccccccccccccccEEEEeCCCCCCCHHHHHHHHHhcCC
Confidence 6899999999999999999998753 3678999999987642 24679999999999999999999999
Q ss_pred Cceeeee
Q psy11608 80 GKSLATT 86 (99)
Q Consensus 80 G~i~~~~ 86 (99)
|+|+.+.
T Consensus 260 G~I~rV~ 266 (578)
T TIGR01648 260 GKVERVK 266 (578)
T ss_pred CceEEEE
Confidence 9997653
No 20
>KOG0127|consensus
Probab=99.54 E-value=5.7e-14 Score=112.31 Aligned_cols=95 Identities=18% Similarity=0.242 Sum_probs=79.3
Q ss_pred eEEEEE--eeCCCCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecCCC---------------------------
Q psy11608 3 MYFVDI--KKQSSASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKSL--------------------------- 53 (99)
Q Consensus 3 I~~v~i--k~~~~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k~~--------------------------- 53 (99)
+.+|.| |.|+.-.|||||+|.+..+|+.|++.|||..|+|++|-|.|+-+.
T Consensus 144 V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd~ye~ta~~~~~s~Kk~~~eEed~e~~ 223 (678)
T KOG0127|consen 144 VVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDKDTYEDTAHEEKQSLKKAVKEEEDKEAD 223 (678)
T ss_pred EEEEEcccCCCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeecccccccccchhhhhhhhhccchhhhcccc
Confidence 455665 444566799999999999999999999999999999999874110
Q ss_pred --------------------------------------------------------------C-----ceEEEEcCCCCC
Q psy11608 54 --------------------------------------------------------------A-----TTCVWVDGVAGK 66 (99)
Q Consensus 54 --------------------------------------------------------------~-----~~~lfVg~l~~~ 66 (99)
+ ...|||.|||.+
T Consensus 224 ~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~~~k~~q~k~~~en~~~~~tVFvRNL~fD 303 (678)
T KOG0127|consen 224 EDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSGKKESDKKAQNKTTRENITEGKTVFVRNLPFD 303 (678)
T ss_pred cccccccchhcccccccccccccccchhhhccccccccccccccccccccCcccchhccccccccccccceEEEecCCcc
Confidence 0 157999999999
Q ss_pred CChHHHHhhhcCCCceeeeeEEEEcCCCCCCC
Q psy11608 67 CGTGEHNRVNLGYGKSLATTCVWVDGVAGKCG 98 (99)
Q Consensus 67 ~s~~~L~~~F~~fG~i~~~~~v~~d~~~g~~~ 98 (99)
+++++|.++|++||+|.. ..+++|+.||+..
T Consensus 304 ~tEEel~~~fskFG~v~y-a~iV~~k~T~~sk 334 (678)
T KOG0127|consen 304 TTEEELKEHFSKFGEVKY-AIIVKDKDTGHSK 334 (678)
T ss_pred ccHHHHHHHHHhhcccee-EEEEeccCCCCcc
Confidence 999999999999999965 4677999999863
No 21
>KOG0105|consensus
Probab=99.51 E-value=7.4e-14 Score=99.74 Aligned_cols=90 Identities=19% Similarity=0.221 Sum_probs=79.6
Q ss_pred ceEEEEEeeCCCCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecCC-----------------------------
Q psy11608 2 VMYFVDIKKQSSASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKS----------------------------- 52 (99)
Q Consensus 2 ~I~~v~ik~~~~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k~----------------------------- 52 (99)
.|.+|++|..+....||||+|+|+.+|+.||..-||.-.++-+++|.++..
T Consensus 32 ~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprggr~s~~~~G~y~gggrgGgg~gg~rgpps 111 (241)
T KOG0105|consen 32 RIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRGGRSSSDRRGSYSGGGRGGGGGGGRRGPPS 111 (241)
T ss_pred ceEEEEeccCCCCCCeeEEEecCccchhhhhhcccccccCcceEEEEeccCCCcccccccccCCCCCCCCCCCcccCCcc
Confidence 689999999999999999999999999999999999999999999987431
Q ss_pred -CCceEEEEcCCCCCCChHHHHhhhcCCCceeeeeEEEEcC
Q psy11608 53 -LATTCVWVDGVAGKCGTGEHNRVNLGYGKSLATTCVWVDG 92 (99)
Q Consensus 53 -~~~~~lfVg~l~~~~s~~~L~~~F~~fG~i~~~~~v~~d~ 92 (99)
....++.|.+||++-+|+||++|+..-|.| ..+.|..|.
T Consensus 112 rrSe~RVvVsGLp~SgSWQDLKDHmReaGdv-Cfadv~rDg 151 (241)
T KOG0105|consen 112 RRSEYRVVVSGLPPSGSWQDLKDHMREAGDV-CFADVQRDG 151 (241)
T ss_pred cccceeEEEecCCCCCchHHHHHHHHhhCCe-eeeeeeccc
Confidence 124689999999999999999999999999 456676654
No 22
>KOG0117|consensus
Probab=99.51 E-value=9.3e-14 Score=108.83 Aligned_cols=80 Identities=10% Similarity=0.165 Sum_probs=71.7
Q ss_pred ceEEEEEeeCC---CCCCeEEEEeCCHHHHHHHHHhhCCeEeC-CeEEEEeecCCCCceEEEEcCCCCCCChHHHHhhhc
Q psy11608 2 VMYFVDIKKQS---SASAFAFVQYTDIASVVRAMRAMDGEYVG-HNRVNLGYGKSLATTCVWVDGVAGKCGTGEHNRVNL 77 (99)
Q Consensus 2 ~I~~v~ik~~~---~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~-~~~i~v~~~k~~~~~~lfVg~l~~~~s~~~L~~~F~ 77 (99)
.|.++.|++|+ .+||||||+|.+.++|++|++.+|+..|. ||.|+|+- +..+++|||||+|.+.+++++.+.|+
T Consensus 109 ~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~--Svan~RLFiG~IPK~k~keeIlee~~ 186 (506)
T KOG0117|consen 109 KIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCV--SVANCRLFIGNIPKTKKKEEILEEMK 186 (506)
T ss_pred ceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEE--eeecceeEeccCCccccHHHHHHHHH
Confidence 58999999995 89999999999999999999999999774 78888774 34578999999999999999999999
Q ss_pred CCCcee
Q psy11608 78 GYGKSL 83 (99)
Q Consensus 78 ~fG~i~ 83 (99)
+-++=+
T Consensus 187 kVteGV 192 (506)
T KOG0117|consen 187 KVTEGV 192 (506)
T ss_pred hhCCCe
Confidence 998753
No 23
>KOG0117|consensus
Probab=99.51 E-value=5.1e-14 Score=110.27 Aligned_cols=88 Identities=17% Similarity=0.223 Sum_probs=75.5
Q ss_pred eEEEEEeeCC----CCCCeEEEEeCCHHHHHHHHHh-hCCe-EeCCeEEEEeecCCCC---------ceEEEEcCCCCCC
Q psy11608 3 MYFVDIKKQS----SASAFAFVQYTDIASVVRAMRA-MDGE-YVGHNRVNLGYGKSLA---------TTCVWVDGVAGKC 67 (99)
Q Consensus 3 I~~v~ik~~~----~s~gfaFV~F~~~~~a~~Ai~~-m~G~-~i~~~~i~v~~~k~~~---------~~~lfVg~l~~~~ 67 (99)
|++|.+-.++ ++||||||+|.|...|..|.+. |+|+ .+.++.+-|.|+.+.. .+-|||.||+.++
T Consensus 192 VvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~~tVdWAep~~e~ded~ms~VKvLYVRNL~~~t 271 (506)
T KOG0117|consen 192 VVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNAITVDWAEPEEEPDEDTMSKVKVLYVRNLMEST 271 (506)
T ss_pred eeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCceeecCCcceeeccCcccCCChhhhhheeeeeeeccchhh
Confidence 5677777775 8999999999999999999987 5776 7889999999998642 3679999999999
Q ss_pred ChHHHHhhhcCCCceeeeeEEEEc
Q psy11608 68 GTGEHNRVNLGYGKSLATTCVWVD 91 (99)
Q Consensus 68 s~~~L~~~F~~fG~i~~~~~v~~d 91 (99)
|+|.|++.|++||.|+.+..+ .|
T Consensus 272 TeE~lk~~F~~~G~veRVkk~-rD 294 (506)
T KOG0117|consen 272 TEETLKKLFNEFGKVERVKKP-RD 294 (506)
T ss_pred hHHHHHHHHHhccceEEeecc-cc
Confidence 999999999999999876554 44
No 24
>KOG4205|consensus
Probab=99.43 E-value=2.3e-13 Score=103.28 Aligned_cols=92 Identities=17% Similarity=0.299 Sum_probs=72.1
Q ss_pred eEEEEEeeCC---CCCCeEEEEeCCHHHHHHHHHh----hCCeEeCCeEEEEeec------CCCCceEEEEcCCCCCCCh
Q psy11608 3 MYFVDIKKQS---SASAFAFVQYTDIASVVRAMRA----MDGEYVGHNRVNLGYG------KSLATTCVWVDGVAGKCGT 69 (99)
Q Consensus 3 I~~v~ik~~~---~s~gfaFV~F~~~~~a~~Ai~~----m~G~~i~~~~i~v~~~------k~~~~~~lfVg~l~~~~s~ 69 (99)
|.++.+|+|+ ++|||+||+|++++...+++.. ++|+.+..++. +... +...+.++|||+||+++++
T Consensus 33 v~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~h~~dgr~ve~k~a-v~r~~~~~~~~~~~tkkiFvGG~~~~~~e 111 (311)
T KOG4205|consen 33 VTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNARTHKLDGRSVEPKRA-VSREDQTKVGRHLRTKKIFVGGLPPDTTE 111 (311)
T ss_pred eeeEEEeccCCCCCcccccceecCCCcchheeecccccccCCccccceec-cCcccccccccccceeEEEecCcCCCCch
Confidence 6789999986 8999999999999999998864 56666655442 1111 1224679999999999999
Q ss_pred HHHHhhhcCCCceeeeeEEEEcCCCCC
Q psy11608 70 GEHNRVNLGYGKSLATTCVWVDGVAGK 96 (99)
Q Consensus 70 ~~L~~~F~~fG~i~~~~~v~~d~~~g~ 96 (99)
++|+++|++||.|..+ .+..|..+..
T Consensus 112 ~~~r~yfe~~g~v~~~-~~~~d~~~~~ 137 (311)
T KOG4205|consen 112 EDFKDYFEQFGKVADV-VIMYDKTTSR 137 (311)
T ss_pred HHHhhhhhccceeEee-EEeecccccc
Confidence 9999999999988664 5558887654
No 25
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.41 E-value=2.8e-12 Score=100.67 Aligned_cols=84 Identities=17% Similarity=0.211 Sum_probs=68.3
Q ss_pred ceEEEEEeeC---CCCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecCC--------------------------
Q psy11608 2 VMYFVDIKKQ---SSASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKS-------------------------- 52 (99)
Q Consensus 2 ~I~~v~ik~~---~~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k~-------------------------- 52 (99)
+|..+.|.++ +.++|||||+|.+.++|..|++.|||..+++++|+|.++..
T Consensus 321 ~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (509)
T TIGR01642 321 DLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVGANQATIDTSNGMAPVTLLAKALSQS 400 (509)
T ss_pred CeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccCCCCCCccccccccccccccccchhh
Confidence 5778888776 47999999999999999999999999999999999877521
Q ss_pred ------CCceEEEEcCCCCCC----------ChHHHHhhhcCCCceeee
Q psy11608 53 ------LATTCVWVDGVAGKC----------GTGEHNRVNLGYGKSLAT 85 (99)
Q Consensus 53 ------~~~~~lfVg~l~~~~----------s~~~L~~~F~~fG~i~~~ 85 (99)
.++..|++.|+...- ..++|++.|++||.|+.+
T Consensus 401 ~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v 449 (509)
T TIGR01642 401 ILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINI 449 (509)
T ss_pred hccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEE
Confidence 135678999985321 126899999999999765
No 26
>KOG0110|consensus
Probab=99.38 E-value=1.4e-12 Score=106.29 Aligned_cols=83 Identities=18% Similarity=0.290 Sum_probs=70.4
Q ss_pred CCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecCCC-------------CceEEEEcCCCCCCChHHHHhhhcCC
Q psy11608 13 SASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKSL-------------ATTCVWVDGVAGKCGTGEHNRVNLGY 79 (99)
Q Consensus 13 ~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k~~-------------~~~~lfVg~l~~~~s~~~L~~~F~~f 79 (99)
-|.|||||+|.++++|++|++.|+|..+.|..+.+.+.... +.++|+|.|||-..+-.+++++|+.|
T Consensus 558 lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~~k~~~~~gK~~~~kk~~tKIlVRNipFeAt~rEVr~LF~aF 637 (725)
T KOG0110|consen 558 LSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISENKPASTVGKKKSKKKKGTKILVRNIPFEATKREVRKLFTAF 637 (725)
T ss_pred cccceeEEEecCHHHHHHHHHHhcCceecCceEEEEeccCccccccccccccccccceeeeeccchHHHHHHHHHHHhcc
Confidence 37799999999999999999999999999999988876521 24689999999999999999999999
Q ss_pred CceeeeeEEEEcCCCCCCC
Q psy11608 80 GKSLATTCVWVDGVAGKCG 98 (99)
Q Consensus 80 G~i~~~~~v~~d~~~g~~~ 98 (99)
|.+. .|-+....|+|.
T Consensus 638 Gqlk---svRlPKK~~k~a 653 (725)
T KOG0110|consen 638 GQLK---SVRLPKKIGKGA 653 (725)
T ss_pred ccee---eeccchhhcchh
Confidence 9994 444555566664
No 27
>KOG0127|consensus
Probab=99.33 E-value=3.8e-12 Score=102.04 Aligned_cols=97 Identities=15% Similarity=0.198 Sum_probs=79.3
Q ss_pred ceEEEEEeeCC---CCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecCCC-------------------------
Q psy11608 2 VMYFVDIKKQS---SASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKSL------------------------- 53 (99)
Q Consensus 2 ~I~~v~ik~~~---~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k~~------------------------- 53 (99)
||-.+.+-..+ ++||||||+|.=.+|+++|+++.++..++|+.+++..++..
T Consensus 31 Pik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~R~r~e~~~~~e~~~veK~~~q~~~~k 110 (678)
T KOG0127|consen 31 PIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKKRARSEEVEKGENKAVEKPIEQKRPTK 110 (678)
T ss_pred CcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceecccccccccccchhcccccchhhhcccccCCcch
Confidence 34444444443 78999999999999999999999999999999988765321
Q ss_pred -----CceEEEEcCCCCCCChHHHHhhhcCCCceeeeeEEEEcCCCCCCCC
Q psy11608 54 -----ATTCVWVDGVAGKCGTGEHNRVNLGYGKSLATTCVWVDGVAGKCGT 99 (99)
Q Consensus 54 -----~~~~lfVg~l~~~~s~~~L~~~F~~fG~i~~~~~v~~d~~~g~~~~ 99 (99)
|--+|.|.|||-.+.+++|+.+|++||.|.++ .+...+.++-||.
T Consensus 111 ~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei-~IP~k~dgklcGF 160 (678)
T KOG0127|consen 111 AKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEI-VIPRKKDGKLCGF 160 (678)
T ss_pred hhccCccceEEeecCCcccCcHHHHHHHhhcceEEEE-EcccCCCCCccce
Confidence 12479999999999999999999999999987 4447888888873
No 28
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.30 E-value=3.7e-11 Score=93.42 Aligned_cols=48 Identities=21% Similarity=0.461 Sum_probs=44.6
Q ss_pred ceEEEEEeeCC---CCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEee
Q psy11608 2 VMYFVDIKKQS---SASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGY 49 (99)
Q Consensus 2 ~I~~v~ik~~~---~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~ 49 (99)
.|..|.|.++. +++|||||+|.+.++|.+|++.|||..+.+++|+|.|
T Consensus 212 ~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~ 262 (457)
T TIGR01622 212 DIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGY 262 (457)
T ss_pred CeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEE
Confidence 57889888875 6899999999999999999999999999999999988
No 29
>KOG0123|consensus
Probab=99.30 E-value=1.9e-11 Score=94.66 Aligned_cols=91 Identities=16% Similarity=0.286 Sum_probs=78.0
Q ss_pred CceEEEEEeeCC-CCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecCC------------CCceEEEEcCCCCCC
Q psy11608 1 MVMYFVDIKKQS-SASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKS------------LATTCVWVDGVAGKC 67 (99)
Q Consensus 1 ~~I~~v~ik~~~-~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k~------------~~~~~lfVg~l~~~~ 67 (99)
+.|++|-+..+. .|+|| ||+|+++++|.+|++.|||..+.+++|-|+.... ...+++||.+++.+.
T Consensus 101 g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~er~~~~~~~~~~~t~v~vk~~~~~~ 179 (369)
T KOG0123|consen 101 GNILSCKVATDENGSKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKEEREAPLGEYKKRFTNVYVKNLEEDS 179 (369)
T ss_pred cCeeEEEEEEcCCCceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchhhhcccccchhhhhhhhheecccccc
Confidence 479999999996 79999 9999999999999999999999999998864321 235679999999999
Q ss_pred ChHHHHhhhcCCCceeeeeEEEEcCC
Q psy11608 68 GTGEHNRVNLGYGKSLATTCVWVDGV 93 (99)
Q Consensus 68 s~~~L~~~F~~fG~i~~~~~v~~d~~ 93 (99)
+++.|...|++||+|... .++.|..
T Consensus 180 ~~~~l~~~f~~~g~i~s~-~v~~~~~ 204 (369)
T KOG0123|consen 180 TDEELKDLFSAYGSITSV-AVMRDSI 204 (369)
T ss_pred chHHHHHhhcccCcceEE-EEeecCC
Confidence 999999999999999754 5545543
No 30
>KOG0145|consensus
Probab=99.25 E-value=3.8e-11 Score=89.72 Aligned_cols=86 Identities=12% Similarity=0.244 Sum_probs=72.1
Q ss_pred CCCCCeEEEEeCCHHHHHHHHHhhCCeEeCC--eEEEEeecCC-------------------------------------
Q psy11608 12 SSASAFAFVQYTDIASVVRAMRAMDGEYVGH--NRVNLGYGKS------------------------------------- 52 (99)
Q Consensus 12 ~~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~--~~i~v~~~k~------------------------------------- 52 (99)
+.|||-|||.|+...+|+.||+.+||..-.+ .+|.|.|+..
T Consensus 166 g~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~tepItVKFannPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~ 245 (360)
T KOG0145|consen 166 GLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPITVKFANNPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNL 245 (360)
T ss_pred ceecceeEEEecchhHHHHHHHhccCCCCCCCCCCeEEEecCCcccccchhhhHHhhcCccccCCCcccchhhhhccccc
Confidence 3799999999999999999999999985544 4666655321
Q ss_pred ----------C--------------------CceEEEEcCCCCCCChHHHHhhhcCCCceeeeeEEEEcCCCCCCC
Q psy11608 53 ----------L--------------------ATTCVWVDGVAGKCGTGEHNRVNLGYGKSLATTCVWVDGVAGKCG 98 (99)
Q Consensus 53 ----------~--------------------~~~~lfVg~l~~~~s~~~L~~~F~~fG~i~~~~~v~~d~~~g~~~ 98 (99)
. ..-+|||=||+++.+|.-|.++|++||-|..+ .|++|..|.+|+
T Consensus 246 ~~~~~~~~rfsP~~~d~m~~l~~~~lp~~~~~g~ciFvYNLspd~de~~LWQlFgpFGAv~nV-KvirD~ttnkCK 320 (360)
T KOG0145|consen 246 LNPHAAQARFSPMTIDGMSGLAGVNLPGGPGGGWCIFVYNLSPDADESILWQLFGPFGAVTNV-KVIRDFTTNKCK 320 (360)
T ss_pred cchhhhhccCCCccccccceeeeeccCCCCCCeeEEEEEecCCCchHhHHHHHhCcccceeeE-EEEecCCccccc
Confidence 0 02579999999999999999999999999876 677999999997
No 31
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.17 E-value=1.6e-10 Score=78.95 Aligned_cols=53 Identities=15% Similarity=0.285 Sum_probs=48.0
Q ss_pred ceEEEEEeeCC---CCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecCCCC
Q psy11608 2 VMYFVDIKKQS---SASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKSLA 54 (99)
Q Consensus 2 ~I~~v~ik~~~---~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k~~~ 54 (99)
.|.+|.|..|. +++|||||+|.+.++|++|++.|||..+.+++|+|.+++..+
T Consensus 60 ~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a~~~~ 115 (144)
T PLN03134 60 DVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPANDRP 115 (144)
T ss_pred CeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeCCcCC
Confidence 58899998875 789999999999999999999999999999999999986543
No 32
>KOG0147|consensus
Probab=99.14 E-value=7e-11 Score=94.37 Aligned_cols=95 Identities=17% Similarity=0.143 Sum_probs=80.5
Q ss_pred ceEEEEEeeCC---CCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecC------------------CCCceEEEE
Q psy11608 2 VMYFVDIKKQS---SASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGK------------------SLATTCVWV 60 (99)
Q Consensus 2 ~I~~v~ik~~~---~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k------------------~~~~~~lfV 60 (99)
.|.+|.|..|. +++|-|||+|.|.++...|| .|.|..+.|-+|.|--.. ..|-.+|||
T Consensus 205 kVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~ai-aLsGqrllg~pv~vq~sEaeknr~a~~s~a~~~k~~~~p~~rl~v 283 (549)
T KOG0147|consen 205 KVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAI-ALSGQRLLGVPVIVQLSEAEKNRAANASPALQGKGFTGPMRRLYV 283 (549)
T ss_pred CcceeEeeccccchhhcceeEEEEecccchhhHh-hhcCCcccCceeEecccHHHHHHHHhccccccccccccchhhhhh
Confidence 47789998886 89999999999999999999 699999999998773210 123445999
Q ss_pred cCCCCCCChHHHHhhhcCCCceeeeeEEEEcCCCCCCC
Q psy11608 61 DGVAGKCGTGEHNRVNLGYGKSLATTCVWVDGVAGKCG 98 (99)
Q Consensus 61 g~l~~~~s~~~L~~~F~~fG~i~~~~~v~~d~~~g~~~ 98 (99)
|||..++++++|+..|++||.|..+ .+.+|..||.|+
T Consensus 284 gnLHfNite~~lr~ifepfg~Ie~v-~l~~d~~tG~sk 320 (549)
T KOG0147|consen 284 GNLHFNITEDMLRGIFEPFGKIENV-QLTKDSETGRSK 320 (549)
T ss_pred cccccCchHHHHhhhccCcccceee-eecccccccccc
Confidence 9999999999999999999999654 777999999986
No 33
>smart00361 RRM_1 RNA recognition motif.
Probab=99.13 E-value=3.5e-10 Score=68.08 Aligned_cols=36 Identities=14% Similarity=0.357 Sum_probs=34.0
Q ss_pred CCCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEE
Q psy11608 12 SSASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNL 47 (99)
Q Consensus 12 ~~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v 47 (99)
+.++|||||+|.+.++|.+|++.|||..+.+++|++
T Consensus 34 ~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 34 NHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred CCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 468999999999999999999999999999999875
No 34
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.11 E-value=6.2e-10 Score=63.93 Aligned_cols=47 Identities=19% Similarity=0.450 Sum_probs=40.7
Q ss_pred ceEEEEEeeCCCCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeec
Q psy11608 2 VMYFVDIKKQSSASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYG 50 (99)
Q Consensus 2 ~I~~v~ik~~~~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~ 50 (99)
.|.+|.+-+.. +++|||+|.+.++|+.|++.|||..+.|++|+|.|+
T Consensus 10 ~V~~i~~~~~~--~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 10 EVKKIKIFKKK--RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp -EEEEEEETTS--TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred cEEEEEEEeCC--CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 46677775543 799999999999999999999999999999999874
No 35
>KOG0144|consensus
Probab=99.05 E-value=7.6e-10 Score=86.94 Aligned_cols=49 Identities=16% Similarity=0.273 Sum_probs=41.3
Q ss_pred ceEEEEEeeCC--CCCCeEEEEeCCHHHHHHHHHhhCCe-EeCC--eEEEEeec
Q psy11608 2 VMYFVDIKKQS--SASAFAFVQYTDIASVVRAMRAMDGE-YVGH--NRVNLGYG 50 (99)
Q Consensus 2 ~I~~v~ik~~~--~s~gfaFV~F~~~~~a~~Ai~~m~G~-~i~~--~~i~v~~~ 50 (99)
.|+||-|.||+ .|||||||+|...+.|..||++|||. .+.| .++-|.|+
T Consensus 150 ~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVkFA 203 (510)
T KOG0144|consen 150 HIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVKFA 203 (510)
T ss_pred ccchhhheecccccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEEec
Confidence 48999999986 89999999999999999999999997 4433 46666553
No 36
>KOG4206|consensus
Probab=98.97 E-value=3.2e-09 Score=77.13 Aligned_cols=84 Identities=13% Similarity=0.166 Sum_probs=74.5
Q ss_pred ceEEEEEeeCCCCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecCC-----------------------------
Q psy11608 2 VMYFVDIKKQSSASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKS----------------------------- 52 (99)
Q Consensus 2 ~I~~v~ik~~~~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k~----------------------------- 52 (99)
-|++|..-+.++.||-|||.|.+++.|-.|+.+|+|..+.||++++-|+++
T Consensus 39 ~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqyA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~ 118 (221)
T KOG4206|consen 39 KILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQYAKSDSDIIAQAPGTFVEKEKKINGEILARIKQ 118 (221)
T ss_pred CeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCcccCchhheecccCccchhhccCceeccccCccccccccccCC
Confidence 378999999999999999999999999999999999999999999977532
Q ss_pred -------------------------CCceEEEEcCCCCCCChHHHHhhhcCCCceeee
Q psy11608 53 -------------------------LATTCVWVDGVAGKCGTGEHNRVNLGYGKSLAT 85 (99)
Q Consensus 53 -------------------------~~~~~lfVg~l~~~~s~~~L~~~F~~fG~i~~~ 85 (99)
.|++-||+-|||...+.+.|..+|++|.-..++
T Consensus 119 ~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e~l~~lf~qf~g~kei 176 (221)
T KOG4206|consen 119 PLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESESEMLSDLFEQFPGFKEI 176 (221)
T ss_pred cccccccccccccccCCCCccccCCCCceEEEEecCCcchhHHHHHHHHhhCccccee
Confidence 234569999999999999999999999877654
No 37
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=98.95 E-value=2.9e-09 Score=62.17 Aligned_cols=45 Identities=11% Similarity=0.407 Sum_probs=40.5
Q ss_pred ceEEEEEeeC--CCCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEE
Q psy11608 2 VMYFVDIKKQ--SSASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVN 46 (99)
Q Consensus 2 ~I~~v~ik~~--~~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~ 46 (99)
+|..+.+..+ ++++|||||+|.+.++|++|++.|||..+++++||
T Consensus 24 ~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 24 KIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp TEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred hcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 4677888875 48999999999999999999999999999999886
No 38
>KOG0125|consensus
Probab=98.95 E-value=1.7e-09 Score=82.57 Aligned_cols=50 Identities=20% Similarity=0.291 Sum_probs=46.4
Q ss_pred ceEEEEEeeCC-CCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecC
Q psy11608 2 VMYFVDIKKQS-SASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGK 51 (99)
Q Consensus 2 ~I~~v~ik~~~-~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k 51 (99)
+|+||.|.-.. .|||||||+|++++||++|.++|+|..+.||+|.|+.+.
T Consensus 122 ~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~AT 172 (376)
T KOG0125|consen 122 KVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNAT 172 (376)
T ss_pred ceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEeccc
Confidence 68999998775 899999999999999999999999999999999998764
No 39
>KOG0149|consensus
Probab=98.92 E-value=1.2e-09 Score=80.14 Aligned_cols=43 Identities=21% Similarity=0.261 Sum_probs=39.8
Q ss_pred ceEEEEcCCCCCCChHHHHhhhcCCCceeeeeEEEEcCCCCCCC
Q psy11608 55 TTCVWVDGVAGKCGTGEHNRVNLGYGKSLATTCVWVDGVAGKCG 98 (99)
Q Consensus 55 ~~~lfVg~l~~~~s~~~L~~~F~~fG~i~~~~~v~~d~~~g~~~ 98 (99)
.++||||||+=.+..|+|+++|++||+|++. .|+.|+.||+|+
T Consensus 12 ~TKifVggL~w~T~~~~l~~yFeqfGeI~ea-vvitd~~t~rsk 54 (247)
T KOG0149|consen 12 FTKIFVGGLAWETHKETLRRYFEQFGEIVEA-VVITDKNTGRSK 54 (247)
T ss_pred EEEEEEcCcccccchHHHHHHHHHhCceEEE-EEEeccCCcccc
Confidence 4799999999999999999999999999986 666999999986
No 40
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=98.91 E-value=1.4e-08 Score=70.54 Aligned_cols=82 Identities=15% Similarity=0.239 Sum_probs=72.0
Q ss_pred ceEEEEEeeCC---CCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecC----C----------------------
Q psy11608 2 VMYFVDIKKQS---SASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGK----S---------------------- 52 (99)
Q Consensus 2 ~I~~v~ik~~~---~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k----~---------------------- 52 (99)
+|..|.|..+. .++|||||+|.++++|..|++.|+|..+.+++++|.+.. +
T Consensus 141 ~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (306)
T COG0724 141 PVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQPASQPRSELSNNLDASFAKKLSRGKAL 220 (306)
T ss_pred ceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeeccccccccccccccccchhhhccccccccc
Confidence 46778888884 899999999999999999999999999999999998732 1
Q ss_pred --CCceEEEEcCCCCCCChHHHHhhhcCCCcee
Q psy11608 53 --LATTCVWVDGVAGKCGTGEHNRVNLGYGKSL 83 (99)
Q Consensus 53 --~~~~~lfVg~l~~~~s~~~L~~~F~~fG~i~ 83 (99)
.....+++++++..++..++...|..+|.+.
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (306)
T COG0724 221 LLEKSDNLYVGNLPLKTAEEELADLFKSRGDIV 253 (306)
T ss_pred cccccceeeccccccccchhHHHHhccccccce
Confidence 1245799999999999999999999999994
No 41
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=98.91 E-value=2.7e-09 Score=72.89 Aligned_cols=44 Identities=16% Similarity=0.249 Sum_probs=38.9
Q ss_pred CceEEEEcCCCCCCChHHHHhhhcCCCceeeeeEEEEcCCCCCCC
Q psy11608 54 ATTCVWVDGVAGKCGTGEHNRVNLGYGKSLATTCVWVDGVAGKCG 98 (99)
Q Consensus 54 ~~~~lfVg~l~~~~s~~~L~~~F~~fG~i~~~~~v~~d~~~g~~~ 98 (99)
.+++|||+|||.++++++|+++|++||+|.++ .++.|+.+|++.
T Consensus 33 ~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v-~i~~d~~tg~~k 76 (144)
T PLN03134 33 MSTKLFIGGLSWGTDDASLRDAFAHFGDVVDA-KVIVDRETGRSR 76 (144)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEE-EEEecCCCCCcc
Confidence 36789999999999999999999999999876 566999888764
No 42
>KOG1457|consensus
Probab=98.88 E-value=1.1e-08 Score=75.10 Aligned_cols=44 Identities=20% Similarity=0.289 Sum_probs=33.5
Q ss_pred EEEeeCCCC----CCeEEEEeCCHHHHHHHHHhhCCeEeCC---eEEEEee
Q psy11608 6 VDIKKQSSA----SAFAFVQYTDIASVVRAMRAMDGEYVGH---NRVNLGY 49 (99)
Q Consensus 6 v~ik~~~~s----~gfaFV~F~~~~~a~~Ai~~m~G~~i~~---~~i~v~~ 49 (99)
..||..++. +-+||++|.+.++|++|+++|||..++. ..+++..
T Consensus 64 slLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhiEl 114 (284)
T KOG1457|consen 64 SLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHIEL 114 (284)
T ss_pred eeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEeee
Confidence 445555433 3699999999999999999999998864 4555544
No 43
>KOG0146|consensus
Probab=98.82 E-value=2.5e-08 Score=74.96 Aligned_cols=41 Identities=17% Similarity=0.326 Sum_probs=37.4
Q ss_pred eEEEEcCCCCCCChHHHHhhhcCCCceeeeeEEEEcCCCCCC
Q psy11608 56 TCVWVDGVAGKCGTGEHNRVNLGYGKSLATTCVWVDGVAGKC 97 (99)
Q Consensus 56 ~~lfVg~l~~~~s~~~L~~~F~~fG~i~~~~~v~~d~~~g~~ 97 (99)
-+|||=.||....+.+|-++|-.||.|++ ..|.+|+.|..+
T Consensus 286 CNlFIYHLPQEFgDaEliQmF~PFGhivS-aKVFvDRATNQS 326 (371)
T KOG0146|consen 286 CNLFIYHLPQEFGDAELIQMFLPFGHIVS-AKVFVDRATNQS 326 (371)
T ss_pred ceEEEEeCchhhccHHHHHHhccccceee-eeeeehhccccc
Confidence 47999999999999999999999999998 588899998754
No 44
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=98.80 E-value=1.8e-08 Score=82.51 Aligned_cols=53 Identities=13% Similarity=0.279 Sum_probs=48.2
Q ss_pred ceEEEEEeeCC---CCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecCCCC
Q psy11608 2 VMYFVDIKKQS---SASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKSLA 54 (99)
Q Consensus 2 ~I~~v~ik~~~---~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k~~~ 54 (99)
.|.+|.|.++. +++|||||+|.+.++|.+|++.|||..++|+.|+|+++.+.|
T Consensus 230 ~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi~pP 285 (612)
T TIGR01645 230 EIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVTPP 285 (612)
T ss_pred CeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecCCCc
Confidence 58899999885 689999999999999999999999999999999999887544
No 45
>smart00360 RRM RNA recognition motif.
Probab=98.80 E-value=3.4e-08 Score=56.23 Aligned_cols=46 Identities=17% Similarity=0.386 Sum_probs=40.8
Q ss_pred ceEEEEEeeCC---CCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEE
Q psy11608 2 VMYFVDIKKQS---SASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNL 47 (99)
Q Consensus 2 ~I~~v~ik~~~---~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v 47 (99)
+|.++.+..+. .++|||||+|.+.++|.+|++.|+|..+++++++|
T Consensus 22 ~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v 70 (71)
T smart00360 22 KIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKV 70 (71)
T ss_pred CEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEe
Confidence 47788888763 68999999999999999999999999999998876
No 46
>KOG0112|consensus
Probab=98.80 E-value=1.8e-09 Score=90.28 Aligned_cols=83 Identities=27% Similarity=0.276 Sum_probs=76.6
Q ss_pred ceEEEEEeeCC--CCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeec--CCCCceEEEEcCCCCCCChHHHHhhhc
Q psy11608 2 VMYFVDIKKQS--SASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYG--KSLATTCVWVDGVAGKCGTGEHNRVNL 77 (99)
Q Consensus 2 ~I~~v~ik~~~--~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~--k~~~~~~lfVg~l~~~~s~~~L~~~F~ 77 (99)
.|++|+||++. +.-.||||.|.+.+++-+|..++.|..|+...+++.++ +..+++.+|+|+|++++....|.++|.
T Consensus 398 kve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG~~kst~ttr~~sgglg~w~p~~~l~r~fd 477 (975)
T KOG0112|consen 398 KVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLGQPKSTPTTRLQSGGLGPWSPVSRLNREFD 477 (975)
T ss_pred cccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCcccccccccccccceeeccCCCCCCChHHHHHHHhh
Confidence 57899999995 77789999999999999999999999999888887777 788999999999999999999999999
Q ss_pred CCCceee
Q psy11608 78 GYGKSLA 84 (99)
Q Consensus 78 ~fG~i~~ 84 (99)
.||.|..
T Consensus 478 ~fGpir~ 484 (975)
T KOG0112|consen 478 RFGPIRI 484 (975)
T ss_pred ccCccee
Confidence 9999954
No 47
>KOG0106|consensus
Probab=98.79 E-value=5e-09 Score=76.14 Aligned_cols=76 Identities=16% Similarity=0.191 Sum_probs=64.9
Q ss_pred eEEEEEeeCCCCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecCC------------------------CCceEE
Q psy11608 3 MYFVDIKKQSSASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKS------------------------LATTCV 58 (99)
Q Consensus 3 I~~v~ik~~~~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k~------------------------~~~~~l 58 (99)
|.++.+|. ||+||+|.|..+|+.|+..+||+.+.+.++.+.|++. .....|
T Consensus 28 ~~d~~mk~-----gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~~~~~g~~~~g~r~~~~~~~~~p~~s~~r~ 102 (216)
T KOG0106|consen 28 IPDADMKN-----GFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGKRRGRGRPRGGDRRSDSRRYRPPSRTHFRL 102 (216)
T ss_pred cccceeec-----ccceeccCchhhhhcccchhcCceecceeeeeecccccccccCCCCCCCccchhhccCCccccccee
Confidence 45677775 9999999999999999999999999887777766541 113569
Q ss_pred EEcCCCCCCChHHHHhhhcCCCcee
Q psy11608 59 WVDGVAGKCGTGEHNRVNLGYGKSL 83 (99)
Q Consensus 59 fVg~l~~~~s~~~L~~~F~~fG~i~ 83 (99)
.|-+++..+++++|.++|++||++.
T Consensus 103 ~~~~~~~r~~~qdl~d~~~~~g~~~ 127 (216)
T KOG0106|consen 103 IVRNLSLRVSWQDLKDHFRPAGEVT 127 (216)
T ss_pred eeccchhhhhHHHHhhhhcccCCCc
Confidence 9999999999999999999999993
No 48
>KOG0122|consensus
Probab=98.77 E-value=2e-08 Score=74.13 Aligned_cols=52 Identities=17% Similarity=0.275 Sum_probs=46.7
Q ss_pred ceEEEEEeeCC---CCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecCCC
Q psy11608 2 VMYFVDIKKQS---SASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKSL 53 (99)
Q Consensus 2 ~I~~v~ik~~~---~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k~~ 53 (99)
+|..|-|-+|. .+||||||+|.+.++|++||+.|||.-..+--++|.|+++.
T Consensus 215 ~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEwskP~ 269 (270)
T KOG0122|consen 215 PITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWSKPS 269 (270)
T ss_pred ccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEecCCC
Confidence 57778887774 89999999999999999999999999888888999999875
No 49
>KOG4207|consensus
Probab=98.74 E-value=9.2e-09 Score=74.72 Aligned_cols=48 Identities=25% Similarity=0.382 Sum_probs=43.7
Q ss_pred eEEEEEeeCC---CCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeec
Q psy11608 3 MYFVDIKKQS---SASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYG 50 (99)
Q Consensus 3 I~~v~ik~~~---~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~ 50 (99)
|-||-|=+|. +++|||||.|.+..+|+.|+++|||.++.|+.++|-.+
T Consensus 40 vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~a 90 (256)
T KOG4207|consen 40 VGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMA 90 (256)
T ss_pred ccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhh
Confidence 5688888886 89999999999999999999999999999999988544
No 50
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=98.69 E-value=8.4e-08 Score=56.66 Aligned_cols=45 Identities=20% Similarity=0.402 Sum_probs=40.5
Q ss_pred ceEEEEEeeCC--CCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEE
Q psy11608 2 VMYFVDIKKQS--SASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVN 46 (99)
Q Consensus 2 ~I~~v~ik~~~--~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~ 46 (99)
+|.+|.+.+.. +++|+|||+|.++++|.+|++..+|..++|++|+
T Consensus 24 ~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 24 PVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp BEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 57888888874 6899999999999999999999999999999875
No 51
>PLN03120 nucleic acid binding protein; Provisional
Probab=98.69 E-value=7.7e-08 Score=71.65 Aligned_cols=49 Identities=16% Similarity=0.339 Sum_probs=45.8
Q ss_pred ceEEEEEeeCCCCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecC
Q psy11608 2 VMYFVDIKKQSSASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGK 51 (99)
Q Consensus 2 ~I~~v~ik~~~~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k 51 (99)
.|++|.|.+++.++|||||+|.++++|+.|+. |||..+.+++|+|..+.
T Consensus 30 ~I~~V~I~~d~~~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~ 78 (260)
T PLN03120 30 DIEYVEMQSENERSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAE 78 (260)
T ss_pred CeEEEEEeecCCCCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEecc
Confidence 58999999998889999999999999999995 99999999999998875
No 52
>smart00362 RRM_2 RNA recognition motif.
Probab=98.68 E-value=1.6e-07 Score=53.62 Aligned_cols=46 Identities=24% Similarity=0.450 Sum_probs=40.2
Q ss_pred ceEEEEEeeC-CCCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEE
Q psy11608 2 VMYFVDIKKQ-SSASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNL 47 (99)
Q Consensus 2 ~I~~v~ik~~-~~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v 47 (99)
+|.++.+..+ +.++|+|||+|.+.++|++|++.++|..+.++++++
T Consensus 25 ~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v 71 (72)
T smart00362 25 PIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRV 71 (72)
T ss_pred CEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEee
Confidence 4667777766 467899999999999999999999999999998876
No 53
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=98.67 E-value=4e-08 Score=57.27 Aligned_cols=33 Identities=15% Similarity=0.154 Sum_probs=29.1
Q ss_pred EEEcCCCCCCChHHHHhhhcCCCceeeeeEEEEc
Q psy11608 58 VWVDGVAGKCGTGEHNRVNLGYGKSLATTCVWVD 91 (99)
Q Consensus 58 lfVg~l~~~~s~~~L~~~F~~fG~i~~~~~v~~d 91 (99)
|||+|||+++++++|+++|++||.|..+ .+..+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~-~~~~~ 33 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESI-KVMRN 33 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEE-EEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccc-ccccc
Confidence 7999999999999999999999999654 55455
No 54
>KOG0107|consensus
Probab=98.66 E-value=4.5e-08 Score=69.36 Aligned_cols=48 Identities=23% Similarity=0.402 Sum_probs=42.0
Q ss_pred ceEEEEEeeCCCCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecC
Q psy11608 2 VMYFVDIKKQSSASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGK 51 (99)
Q Consensus 2 ~I~~v~ik~~~~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k 51 (99)
+|.+|-|-+ ++.|||||+|+|+.+|++|+..|||+.|.+.+|+|....
T Consensus 36 ~lrsvWvAr--nPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~ 83 (195)
T KOG0107|consen 36 PLRSVWVAR--NPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELST 83 (195)
T ss_pred cceeEEEee--cCCCceEEeccCcccHHHHHhhcCCccccCceEEEEeec
Confidence 466677766 789999999999999999999999999999999987643
No 55
>KOG0126|consensus
Probab=98.63 E-value=1.6e-08 Score=72.25 Aligned_cols=44 Identities=18% Similarity=0.276 Sum_probs=40.1
Q ss_pred CceEEEEcCCCCCCChHHHHhhhcCCCceeeeeEEEEcCCCCCCC
Q psy11608 54 ATTCVWVDGVAGKCGTGEHNRVNLGYGKSLATTCVWVDGVAGKCG 98 (99)
Q Consensus 54 ~~~~lfVg~l~~~~s~~~L~~~F~~fG~i~~~~~v~~d~~~g~~~ 98 (99)
.+..|||||||.+.||.||--+||+||+|+.+ .+++|+.||+++
T Consensus 34 dsA~Iyiggl~~~LtEgDil~VFSqyGe~vdi-nLiRDk~TGKSK 77 (219)
T KOG0126|consen 34 DSAYIYIGGLPYELTEGDILCVFSQYGEIVDI-NLIRDKKTGKSK 77 (219)
T ss_pred cceEEEECCCcccccCCcEEEEeeccCceEEE-EEEecCCCCccc
Confidence 46789999999999999999999999999998 555999999975
No 56
>KOG0148|consensus
Probab=98.62 E-value=1.1e-07 Score=71.45 Aligned_cols=49 Identities=22% Similarity=0.361 Sum_probs=45.3
Q ss_pred ceEEEEEeeCCCCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecCCC
Q psy11608 2 VMYFVDIKKQSSASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKSL 53 (99)
Q Consensus 2 ~I~~v~ik~~~~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k~~ 53 (99)
+|.+|.|=++ +|||||.|.+.|+|..||.+|||..+++..+|+.|+|..
T Consensus 190 ~I~EVRvFk~---qGYaFVrF~tkEaAahAIv~mNntei~G~~VkCsWGKe~ 238 (321)
T KOG0148|consen 190 PIQEVRVFKD---QGYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCSWGKEG 238 (321)
T ss_pred cceEEEEecc---cceEEEEecchhhHHHHHHHhcCceeCceEEEEeccccC
Confidence 6888888776 899999999999999999999999999999999999864
No 57
>KOG0111|consensus
Probab=98.62 E-value=3.8e-08 Score=72.26 Aligned_cols=51 Identities=14% Similarity=0.251 Sum_probs=43.7
Q ss_pred eEEEEEeeC---CCCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecCCC
Q psy11608 3 MYFVDIKKQ---SSASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKSL 53 (99)
Q Consensus 3 I~~v~ik~~---~~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k~~ 53 (99)
|.+|.|=-| .++||||||+|.-.++|..||..||+..+-|+.|+|++++|.
T Consensus 37 I~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~AkP~ 90 (298)
T KOG0111|consen 37 IKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAKPE 90 (298)
T ss_pred hhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecCCc
Confidence 344444444 289999999999999999999999999999999999999875
No 58
>KOG4208|consensus
Probab=98.59 E-value=8.6e-08 Score=69.20 Aligned_cols=47 Identities=13% Similarity=0.205 Sum_probs=40.7
Q ss_pred eEEEEE---eeCCCCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEee
Q psy11608 3 MYFVDI---KKQSSASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGY 49 (99)
Q Consensus 3 I~~v~i---k~~~~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~ 49 (99)
++.+.+ ||.++|+|||||+|++++.|+-|-+.||++.+.++-+.+.+
T Consensus 77 v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~v 126 (214)
T KOG4208|consen 77 VTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHV 126 (214)
T ss_pred eEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEE
Confidence 445555 67789999999999999999999999999999998887754
No 59
>KOG0226|consensus
Probab=98.58 E-value=2.8e-08 Score=73.84 Aligned_cols=41 Identities=39% Similarity=0.721 Sum_probs=37.7
Q ss_pred eeCCCCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEee
Q psy11608 9 KKQSSASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGY 49 (99)
Q Consensus 9 k~~~~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~ 49 (99)
||.++|+|||||-|.|++++.+|+++|||+++|.++|++..
T Consensus 226 kRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRk 266 (290)
T KOG0226|consen 226 KRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRK 266 (290)
T ss_pred ccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhh
Confidence 56679999999999999999999999999999999998753
No 60
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=98.54 E-value=3e-07 Score=70.78 Aligned_cols=51 Identities=12% Similarity=0.221 Sum_probs=43.9
Q ss_pred ceEEEEEeeCC---CCCCeEEEEeCCHHHHHHHHHhhCCeEeCC--eEEEEeecCC
Q psy11608 2 VMYFVDIKKQS---SASAFAFVQYTDIASVVRAMRAMDGEYVGH--NRVNLGYGKS 52 (99)
Q Consensus 2 ~I~~v~ik~~~---~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~--~~i~v~~~k~ 52 (99)
.|.+|.|.+|. +++|||||+|.+.++|++|+++|||..+.+ ++++|.+++.
T Consensus 219 ~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~a~~ 274 (346)
T TIGR01659 219 QIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRLAEE 274 (346)
T ss_pred CEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECCc
Confidence 47788888774 789999999999999999999999998855 6888888764
No 61
>PLN03120 nucleic acid binding protein; Provisional
Probab=98.53 E-value=1e-07 Score=71.02 Aligned_cols=42 Identities=12% Similarity=-0.067 Sum_probs=35.6
Q ss_pred ceEEEEcCCCCCCChHHHHhhhcCCCceeeeeEEEEcCCCCCC
Q psy11608 55 TTCVWVDGVAGKCGTGEHNRVNLGYGKSLATTCVWVDGVAGKC 97 (99)
Q Consensus 55 ~~~lfVg~l~~~~s~~~L~~~F~~fG~i~~~~~v~~d~~~g~~ 97 (99)
.++|||+|||+.+++++|+++|+.||+|..+ .+..|+.++++
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V-~I~~d~~~~Gf 45 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYV-EMQSENERSQI 45 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEE-EEeecCCCCCE
Confidence 4789999999999999999999999999876 55578755443
No 62
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=98.51 E-value=1e-06 Score=50.49 Aligned_cols=48 Identities=23% Similarity=0.472 Sum_probs=42.1
Q ss_pred ceEEEEEeeCC--CCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEee
Q psy11608 2 VMYFVDIKKQS--SASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGY 49 (99)
Q Consensus 2 ~I~~v~ik~~~--~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~ 49 (99)
+|..+.+..++ .++|+|||+|.+.++|..|++.++|..+.++++.|.+
T Consensus 25 ~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 25 KVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 47778888776 5789999999999999999999999999999987753
No 63
>KOG0149|consensus
Probab=98.45 E-value=2.3e-07 Score=68.12 Aligned_cols=46 Identities=13% Similarity=0.271 Sum_probs=36.4
Q ss_pred ceEEEEEeeCC---CCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEe
Q psy11608 2 VMYFVDIKKQS---SASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLG 48 (99)
Q Consensus 2 ~I~~v~ik~~~---~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~ 48 (99)
-|++.+|..|. +|+|||||+|.|.++|.+|.+..| -.|+||+.+++
T Consensus 38 eI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~-piIdGR~aNcn 86 (247)
T KOG0149|consen 38 EIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPN-PIIDGRKANCN 86 (247)
T ss_pred ceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCC-Ccccccccccc
Confidence 37777777775 899999999999999999998754 35566665554
No 64
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=98.40 E-value=6.7e-07 Score=52.72 Aligned_cols=35 Identities=6% Similarity=0.061 Sum_probs=27.9
Q ss_pred EEEcCCCCCCChHHHHhhhcCCCceeeeeEEEEcCC
Q psy11608 58 VWVDGVAGKCGTGEHNRVNLGYGKSLATTCVWVDGV 93 (99)
Q Consensus 58 lfVg~l~~~~s~~~L~~~F~~fG~i~~~~~v~~d~~ 93 (99)
|||+|||+++++++|++.|+.||.|..+ .+..++.
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v-~~~~~~~ 35 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKV-RLIKNKD 35 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEE-EEEESTT
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceE-EEEeeec
Confidence 7999999999999999999999999765 4445554
No 65
>PLN03121 nucleic acid binding protein; Provisional
Probab=98.39 E-value=4.1e-07 Score=67.17 Aligned_cols=42 Identities=10% Similarity=-0.091 Sum_probs=35.9
Q ss_pred ceEEEEcCCCCCCChHHHHhhhcCCCceeeeeEEEEcCCCCCC
Q psy11608 55 TTCVWVDGVAGKCGTGEHNRVNLGYGKSLATTCVWVDGVAGKC 97 (99)
Q Consensus 55 ~~~lfVg~l~~~~s~~~L~~~F~~fG~i~~~~~v~~d~~~g~~ 97 (99)
...|||+||++.+++++|+++|+.||+|..+ .+..|..+++.
T Consensus 5 g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V-~I~~D~et~gf 46 (243)
T PLN03121 5 GYTAEVTNLSPKATEKDVYDFFSHCGAIEHV-EIIRSGEYACT 46 (243)
T ss_pred ceEEEEecCCCCCCHHHHHHHHHhcCCeEEE-EEecCCCcceE
Confidence 4689999999999999999999999999876 55578766543
No 66
>KOG1190|consensus
Probab=98.38 E-value=2.6e-06 Score=67.02 Aligned_cols=81 Identities=12% Similarity=0.150 Sum_probs=66.7
Q ss_pred eEEEEEeeCCCCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecCC------------------------------
Q psy11608 3 MYFVDIKKQSSASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKS------------------------------ 52 (99)
Q Consensus 3 I~~v~ik~~~~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k~------------------------------ 52 (99)
|..|-|.. +.+--|-|++.|...|+.|+++|+|..+.+++|||.+.|+
T Consensus 325 VqRVkil~--nkkd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~vqlp~egq~d~glT~dy~~spLhrfkkp 402 (492)
T KOG1190|consen 325 VQRVKILY--NKKDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTNVQLPREGQEDQGLTKDYGNSPLHRFKKP 402 (492)
T ss_pred eEEEEeee--cCCcceeeeecchhHHHHHHHHhhcceecCceEEEeeccCccccCCCCCCccccccccCCCCchhhccCc
Confidence 33444443 3346799999999999999999999999999999987653
Q ss_pred ---------CCceEEEEcCCCCCCChHHHHhhhcCCCceeee
Q psy11608 53 ---------LATTCVWVDGVAGKCGTGEHNRVNLGYGKSLAT 85 (99)
Q Consensus 53 ---------~~~~~lfVg~l~~~~s~~~L~~~F~~fG~i~~~ 85 (99)
.|+..|...|+|++++||+|+.+|..-|-..+.
T Consensus 403 gsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~~g~~vka 444 (492)
T KOG1190|consen 403 GSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKA 444 (492)
T ss_pred ccccccccCCchhheeeccCCcccchhHHHHhhhcCCceEEe
Confidence 135689999999999999999999999877543
No 67
>PLN03121 nucleic acid binding protein; Provisional
Probab=98.35 E-value=1.4e-06 Score=64.26 Aligned_cols=48 Identities=19% Similarity=0.286 Sum_probs=44.3
Q ss_pred ceEEEEEeeCCCCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeec
Q psy11608 2 VMYFVDIKKQSSASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYG 50 (99)
Q Consensus 2 ~I~~v~ik~~~~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~ 50 (99)
.|++|.|.+|+++++||||+|.++++|+.|+ .|+|..|.+++|.|..+
T Consensus 31 ~I~~V~I~~D~et~gfAfVtF~d~~aaetAl-lLnGa~l~d~~I~It~~ 78 (243)
T PLN03121 31 AIEHVEIIRSGEYACTAYVTFKDAYALETAV-LLSGATIVDQRVCITRW 78 (243)
T ss_pred CeEEEEEecCCCcceEEEEEECCHHHHHHHH-hcCCCeeCCceEEEEeC
Confidence 5899999999999999999999999999999 69999999999998643
No 68
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=98.34 E-value=8e-07 Score=61.69 Aligned_cols=43 Identities=12% Similarity=0.135 Sum_probs=37.5
Q ss_pred ceEEEEcCCCCCCChHHHHhhhcCCCceeeeeEEEEcCCCCCCC
Q psy11608 55 TTCVWVDGVAGKCGTGEHNRVNLGYGKSLATTCVWVDGVAGKCG 98 (99)
Q Consensus 55 ~~~lfVg~l~~~~s~~~L~~~F~~fG~i~~~~~v~~d~~~g~~~ 98 (99)
..+|||||||.++++++|+++|++||.|..+ .+..|+.+|++.
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~-~~~~d~~~~~~~ 157 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRV-RLVRDRETGKSR 157 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEE-EeeeccccCccC
Confidence 3889999999999999999999999999775 566898777763
No 69
>KOG0108|consensus
Probab=98.33 E-value=9e-07 Score=70.11 Aligned_cols=52 Identities=17% Similarity=0.382 Sum_probs=47.1
Q ss_pred ceEEEEEeeCC---CCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecCCC
Q psy11608 2 VMYFVDIKKQS---SASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKSL 53 (99)
Q Consensus 2 ~I~~v~ik~~~---~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k~~ 53 (99)
+|.++.+.-|+ +++||||++|.+.++|.+|++.|||..+++++++|+|+...
T Consensus 44 ~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 44 PVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred ccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 56778888885 89999999999999999999999999999999999997643
No 70
>KOG0107|consensus
Probab=98.28 E-value=7.3e-07 Score=63.26 Aligned_cols=36 Identities=28% Similarity=0.424 Sum_probs=32.7
Q ss_pred ceEEEEcCCCCCCChHHHHhhhcCCCceeeeeEEEEcCC
Q psy11608 55 TTCVWVDGVAGKCGTGEHNRVNLGYGKSLATTCVWVDGV 93 (99)
Q Consensus 55 ~~~lfVg~l~~~~s~~~L~~~F~~fG~i~~~~~v~~d~~ 93 (99)
+++||||||+..+++.||+..|+.||++ ..|||+..
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~yG~l---rsvWvArn 45 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKYGPL---RSVWVARN 45 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhcCcc---eeEEEeec
Confidence 6899999999999999999999999999 67788653
No 71
>KOG0113|consensus
Probab=98.20 E-value=4.7e-06 Score=63.29 Aligned_cols=50 Identities=14% Similarity=0.328 Sum_probs=45.2
Q ss_pred ceEEEEEeeC---CCCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecC
Q psy11608 2 VMYFVDIKKQ---SSASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGK 51 (99)
Q Consensus 2 ~I~~v~ik~~---~~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k 51 (99)
+|..|.|-+| +.|+|||||+|.++.+...|.++.+|..|.+++|-|.+..
T Consensus 127 ~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDvER 179 (335)
T KOG0113|consen 127 PIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDVER 179 (335)
T ss_pred cceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEecc
Confidence 6888888887 4999999999999999999999999999999999887643
No 72
>PLN03213 repressor of silencing 3; Provisional
Probab=98.18 E-value=4.2e-06 Score=67.49 Aligned_cols=78 Identities=13% Similarity=0.152 Sum_probs=57.1
Q ss_pred ceEEEEEeeCCCCCCeEEEEeCCH--HHHHHHHHhhCCeEeCCeEEEEeecCCC---------------CceEEEEcCCC
Q psy11608 2 VMYFVDIKKQSSASAFAFVQYTDI--ASVVRAMRAMDGEYVGHNRVNLGYGKSL---------------ATTCVWVDGVA 64 (99)
Q Consensus 2 ~I~~v~ik~~~~s~gfaFV~F~~~--~~a~~Ai~~m~G~~i~~~~i~v~~~k~~---------------~~~~lfVg~l~ 64 (99)
.|.+|.|.|... ||||||+|.+. +++.+||..|||..+.|+.|+|+.+++. ...++- ||
T Consensus 36 sVkdVEIpRETG-RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKAKP~YLeRLkrEReea~s~~~~~~k---l~ 111 (759)
T PLN03213 36 TVDAVEFVRTKG-RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKAKEHYLARLKREWEAASSTSDNTIK---AP 111 (759)
T ss_pred CeeEEEEecccC-CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeeccHHHHHHHHHHHHHhhcccccccc---cc
Confidence 367888886644 99999999988 7899999999999999999999987641 112211 22
Q ss_pred CC-CChHHHHhhhcCCCcee
Q psy11608 65 GK-CGTGEHNRVNLGYGKSL 83 (99)
Q Consensus 65 ~~-~s~~~L~~~F~~fG~i~ 83 (99)
.. .....|+-+|-+.++|.
T Consensus 112 k~~~e~~qLnifFPrLrKvK 131 (759)
T PLN03213 112 SDSPPATHLNIFFPRLRKVK 131 (759)
T ss_pred ccCCccceeeEecccccccc
Confidence 22 23456777777777774
No 73
>KOG0114|consensus
Probab=98.17 E-value=6.4e-06 Score=54.38 Aligned_cols=51 Identities=22% Similarity=0.281 Sum_probs=47.1
Q ss_pred ceEEEEEeeCCCCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecCC
Q psy11608 2 VMYFVDIKKQSSASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKS 52 (99)
Q Consensus 2 ~I~~v~ik~~~~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k~ 52 (99)
+|.+|.|=...+.+|-|||.|+|..+|.+|+.+|+|..+.++.+.|.|..+
T Consensus 44 ~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq~ 94 (124)
T KOG0114|consen 44 TIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQP 94 (124)
T ss_pred ceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecCH
Confidence 588888888889999999999999999999999999999999999988764
No 74
>KOG0146|consensus
Probab=98.16 E-value=7e-07 Score=67.30 Aligned_cols=42 Identities=26% Similarity=0.490 Sum_probs=38.0
Q ss_pred CCCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecCCC
Q psy11608 12 SSASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKSL 53 (99)
Q Consensus 12 ~~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k~~ 53 (99)
++|+.||||.|+++.+|+.||.+|||..||-|++||-..++.
T Consensus 324 NQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQLKRPk 365 (371)
T KOG0146|consen 324 NQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPK 365 (371)
T ss_pred ccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhhhcCcc
Confidence 489999999999999999999999999999999988655544
No 75
>PLN03213 repressor of silencing 3; Provisional
Probab=98.16 E-value=2.4e-06 Score=68.89 Aligned_cols=38 Identities=18% Similarity=0.215 Sum_probs=32.7
Q ss_pred ceEEEEcCCCCCCChHHHHhhhcCCCceeeeeEEEEcCCCC
Q psy11608 55 TTCVWVDGVAGKCGTGEHNRVNLGYGKSLATTCVWVDGVAG 95 (99)
Q Consensus 55 ~~~lfVg~l~~~~s~~~L~~~F~~fG~i~~~~~v~~d~~~g 95 (99)
..+||||||+.+++++||+.+|+.||.|..+..+ +.+|
T Consensus 10 gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIp---RETG 47 (759)
T PLN03213 10 GVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFV---RTKG 47 (759)
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEe---cccC
Confidence 5789999999999999999999999999776443 5555
No 76
>KOG0113|consensus
Probab=98.15 E-value=2.3e-06 Score=64.89 Aligned_cols=45 Identities=18% Similarity=0.115 Sum_probs=40.4
Q ss_pred CCceEEEEcCCCCCCChHHHHhhhcCCCceeeeeEEEEcCCCCCCC
Q psy11608 53 LATTCVWVDGVAGKCGTGEHNRVNLGYGKSLATTCVWVDGVAGKCG 98 (99)
Q Consensus 53 ~~~~~lfVg~l~~~~s~~~L~~~F~~fG~i~~~~~v~~d~~~g~~~ 98 (99)
.|-.+|||+-|+-+++|+.|++.|++||+|..+ .++.|+.||+.+
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~Ikri-rlV~d~vTgksk 143 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKRI-RLVRDKVTGKSK 143 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCcceeE-EEeeecccCCcc
Confidence 356899999999999999999999999999887 555999999875
No 77
>KOG4212|consensus
Probab=98.13 E-value=2.1e-05 Score=62.70 Aligned_cols=91 Identities=20% Similarity=0.216 Sum_probs=74.2
Q ss_pred eEEEEEeeCC--CCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEee---------cC--------------------
Q psy11608 3 MYFVDIKKQS--SASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGY---------GK-------------------- 51 (99)
Q Consensus 3 I~~v~ik~~~--~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~---------~k-------------------- 51 (99)
|+-|.+.-|. ++||||-|+|.+++.+++|++.||-+.+.+++++|.- ++
T Consensus 72 v~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd~d~q~~~~~~~~r~g~~~f~~~~~~q~G~~ 151 (608)
T KOG4212|consen 72 VEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKEDHDEQRDQYGRIVRDGGGGFGGGGGVQGGNG 151 (608)
T ss_pred eEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEeccCchhhhhhhheeeccCcccccCcceecccc
Confidence 5566676664 8999999999999999999999999999888887731 00
Q ss_pred ----------------C-------------------------------------------CC-ceEEEEcCCCCCCChHH
Q psy11608 52 ----------------S-------------------------------------------LA-TTCVWVDGVAGKCGTGE 71 (99)
Q Consensus 52 ----------------~-------------------------------------------~~-~~~lfVg~l~~~~s~~~ 71 (99)
+ .| ..++||+||...+....
T Consensus 152 ~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~~~Flr~~h~f~pPl~~k~fvanl~~~vg~~k 231 (608)
T KOG4212|consen 152 GLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGLSASFLRSLHIFSPPLHNKVFVANLDYKVGNKK 231 (608)
T ss_pred cccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccchhhhhhhccCCCCCccceeeeeccccccchHH
Confidence 0 00 36799999999999999
Q ss_pred HHhhhcCCCceeeeeEEEEcCCC
Q psy11608 72 HNRVNLGYGKSLATTCVWVDGVA 94 (99)
Q Consensus 72 L~~~F~~fG~i~~~~~v~~d~~~ 94 (99)
|++.|.--|.|+.+ ..-+|+..
T Consensus 232 L~qvfgmAGkv~~v-df~idKeG 253 (608)
T KOG4212|consen 232 LKQVFGMAGKVQSV-DFSIDKEG 253 (608)
T ss_pred HHHHhccceeeeee-ceeecccc
Confidence 99999999998765 66688863
No 78
>KOG0122|consensus
Probab=98.08 E-value=4.7e-06 Score=61.77 Aligned_cols=43 Identities=12% Similarity=0.097 Sum_probs=39.4
Q ss_pred ceEEEEcCCCCCCChHHHHhhhcCCCceeeeeEEEEcCCCCCCC
Q psy11608 55 TTCVWVDGVAGKCGTGEHNRVNLGYGKSLATTCVWVDGVAGKCG 98 (99)
Q Consensus 55 ~~~lfVg~l~~~~s~~~L~~~F~~fG~i~~~~~v~~d~~~g~~~ 98 (99)
++.|=|.|||+++++++|+++|.+||.|..+ .+++|+.||.|.
T Consensus 189 ~~tvRvtNLsed~~E~dL~eLf~~fg~i~rv-ylardK~TG~~k 231 (270)
T KOG0122|consen 189 EATVRVTNLSEDMREDDLEELFRPFGPITRV-YLARDKETGLSK 231 (270)
T ss_pred cceeEEecCccccChhHHHHHhhccCcccee-EEEEccccCccc
Confidence 4569999999999999999999999999886 666999999985
No 79
>KOG0115|consensus
Probab=98.06 E-value=6.3e-06 Score=61.36 Aligned_cols=65 Identities=12% Similarity=0.133 Sum_probs=56.7
Q ss_pred HHHHHHHHHhhCCeEeCCeEEEEeecCCCCceEEEEcCCCCCCChHHHHhhhcCCCceeeeeEEEEcCC
Q psy11608 25 IASVVRAMRAMDGEYVGHNRVNLGYGKSLATTCVWVDGVAGKCGTGEHNRVNLGYGKSLATTCVWVDGV 93 (99)
Q Consensus 25 ~~~a~~Ai~~m~G~~i~~~~i~v~~~k~~~~~~lfVg~l~~~~s~~~L~~~F~~fG~i~~~~~v~~d~~ 93 (99)
..-|+.|..+|+|....++.++|.|+-. .-|||-||++-++.|.|++.|++||+|+. ..+++|..
T Consensus 4 rt~ae~ak~eLd~~~~~~~~lr~rfa~~---a~l~V~nl~~~~sndll~~~f~~fg~~e~-av~~vD~r 68 (275)
T KOG0115|consen 4 RTLAEIAKRELDGRFPKGRSLRVRFAMH---AELYVVNLMQGASNDLLEQAFRRFGPIER-AVAKVDDR 68 (275)
T ss_pred ccHHHHHHHhcCCCCCCCCceEEEeecc---ceEEEEecchhhhhHHHHHhhhhcCccch-heeeeccc
Confidence 4568889999999999999999999853 78999999999999999999999999976 46667754
No 80
>KOG0147|consensus
Probab=98.04 E-value=8e-06 Score=65.83 Aligned_cols=47 Identities=15% Similarity=0.353 Sum_probs=43.4
Q ss_pred ceEEEEEeeCC---CCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEe
Q psy11608 2 VMYFVDIKKQS---SASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLG 48 (99)
Q Consensus 2 ~I~~v~ik~~~---~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~ 48 (99)
.|+.|++-+|. +++|||||+|.+.++|..|++.|||..|-|+.|+|.
T Consensus 304 ~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~ 353 (549)
T KOG0147|consen 304 KIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVS 353 (549)
T ss_pred cceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEE
Confidence 58889998884 899999999999999999999999999999999985
No 81
>smart00362 RRM_2 RNA recognition motif.
Probab=98.03 E-value=6.8e-06 Score=46.70 Aligned_cols=35 Identities=9% Similarity=0.099 Sum_probs=29.5
Q ss_pred EEEEcCCCCCCChHHHHhhhcCCCceeeeeEEEEcC
Q psy11608 57 CVWVDGVAGKCGTGEHNRVNLGYGKSLATTCVWVDG 92 (99)
Q Consensus 57 ~lfVg~l~~~~s~~~L~~~F~~fG~i~~~~~v~~d~ 92 (99)
+|||+|||+++++++|+++|++||+|..+ .+..++
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~-~~~~~~ 35 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESV-KIPKDT 35 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEE-EEecCC
Confidence 48999999999999999999999999764 443444
No 82
>KOG0126|consensus
Probab=98.02 E-value=2.7e-06 Score=60.97 Aligned_cols=47 Identities=17% Similarity=0.343 Sum_probs=44.2
Q ss_pred ceEEEEEeeCC---CCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEe
Q psy11608 2 VMYFVDIKKQS---SASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLG 48 (99)
Q Consensus 2 ~I~~v~ik~~~---~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~ 48 (99)
.|.+|.+.||. .|+||||+.|+|..+-..|+..|||..|.++.|||.
T Consensus 61 e~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVD 110 (219)
T KOG0126|consen 61 EIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVD 110 (219)
T ss_pred ceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEee
Confidence 47899999995 899999999999999999999999999999999985
No 83
>KOG0131|consensus
Probab=97.97 E-value=7.7e-06 Score=58.43 Aligned_cols=44 Identities=20% Similarity=0.546 Sum_probs=39.5
Q ss_pred EeeCC---CCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecC
Q psy11608 8 IKKQS---SASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGK 51 (99)
Q Consensus 8 ik~~~---~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k 51 (99)
|.+++ +++|||||.|++.+.+.+|+..|||..+.+++|.+.|+.
T Consensus 129 i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ya~ 175 (203)
T KOG0131|consen 129 IMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVSYAF 175 (203)
T ss_pred ccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEEEEE
Confidence 44554 799999999999999999999999999999999998864
No 84
>KOG0125|consensus
Probab=97.96 E-value=7.6e-06 Score=62.87 Aligned_cols=44 Identities=11% Similarity=0.153 Sum_probs=39.2
Q ss_pred ceEEEEcCCCCCCChHHHHhhhcCCCceeeeeEEEEcCCCCCCC
Q psy11608 55 TTCVWVDGVAGKCGTGEHNRVNLGYGKSLATTCVWVDGVAGKCG 98 (99)
Q Consensus 55 ~~~lfVg~l~~~~s~~~L~~~F~~fG~i~~~~~v~~d~~~g~~~ 98 (99)
.++|+|.|+|-..-|.||+.+|++||+|+++..+.=||++.+-|
T Consensus 96 pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFG 139 (376)
T KOG0125|consen 96 PKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFG 139 (376)
T ss_pred CceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccc
Confidence 37999999999999999999999999999998887788776544
No 85
>KOG0109|consensus
Probab=97.94 E-value=4.7e-06 Score=63.25 Aligned_cols=32 Identities=16% Similarity=0.236 Sum_probs=29.2
Q ss_pred eEEEEcCCCCCCChHHHHhhhcCCCceeeeeE
Q psy11608 56 TCVWVDGVAGKCGTGEHNRVNLGYGKSLATTC 87 (99)
Q Consensus 56 ~~lfVg~l~~~~s~~~L~~~F~~fG~i~~~~~ 87 (99)
.+|||||||..+++.+|+.+|++||+|++...
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDI 34 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDI 34 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeee
Confidence 47999999999999999999999999988643
No 86
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=97.89 E-value=2.2e-05 Score=44.73 Aligned_cols=35 Identities=11% Similarity=0.163 Sum_probs=29.5
Q ss_pred EEEEcCCCCCCChHHHHhhhcCCCceeeeeEEEEcC
Q psy11608 57 CVWVDGVAGKCGTGEHNRVNLGYGKSLATTCVWVDG 92 (99)
Q Consensus 57 ~lfVg~l~~~~s~~~L~~~F~~fG~i~~~~~v~~d~ 92 (99)
+|+|+|||+++++++|+++|+.||+|..+ .+..++
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~-~~~~~~ 35 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESV-RIVRDK 35 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEE-EEeeCC
Confidence 48999999999999999999999999765 443444
No 87
>KOG0105|consensus
Probab=97.86 E-value=8.7e-06 Score=58.65 Aligned_cols=32 Identities=16% Similarity=0.292 Sum_probs=29.3
Q ss_pred CceEEEEcCCCCCCChHHHHhhhcCCCceeee
Q psy11608 54 ATTCVWVDGVAGKCGTGEHNRVNLGYGKSLAT 85 (99)
Q Consensus 54 ~~~~lfVg~l~~~~s~~~L~~~F~~fG~i~~~ 85 (99)
.+.+|||||||+++-+.+++++|.+||+|.++
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~i 36 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREI 36 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEE
Confidence 35689999999999999999999999999765
No 88
>smart00360 RRM RNA recognition motif.
Probab=97.85 E-value=2.2e-05 Score=44.33 Aligned_cols=35 Identities=17% Similarity=0.146 Sum_probs=28.6
Q ss_pred EcCCCCCCChHHHHhhhcCCCceeeeeEEEEcCCCC
Q psy11608 60 VDGVAGKCGTGEHNRVNLGYGKSLATTCVWVDGVAG 95 (99)
Q Consensus 60 Vg~l~~~~s~~~L~~~F~~fG~i~~~~~v~~d~~~g 95 (99)
|+|||..+++++|+++|++||+|..+ .+..++.++
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~-~i~~~~~~~ 35 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESV-RLVRDKDTG 35 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEE-EEEeCCCCC
Confidence 57999999999999999999999765 444565433
No 89
>KOG4211|consensus
Probab=97.84 E-value=0.00019 Score=57.56 Aligned_cols=96 Identities=19% Similarity=0.223 Sum_probs=71.5
Q ss_pred ceEEEEEeeC-CCCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecC---------------CCCceEEEEcCCCC
Q psy11608 2 VMYFVDIKKQ-SSASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGK---------------SLATTCVWVDGVAG 65 (99)
Q Consensus 2 ~I~~v~ik~~-~~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k---------------~~~~~~lfVg~l~~ 65 (99)
.|+++.+-+. ++..|=|||+|.+.++++.|++. |-..++.+=|.|-.+. +.++.-|=+.+||-
T Consensus 35 ~I~~~~~~r~~Gr~sGeA~Ve~~seedv~~Alkk-dR~~mg~RYIEVf~~~~~e~d~~~~~~g~~s~~~d~vVRLRGLPf 113 (510)
T KOG4211|consen 35 GIENLEIPRRNGRPSGEAYVEFTSEEDVEKALKK-DRESMGHRYIEVFTAGGAEADWVMRPGGPNSSANDGVVRLRGLPF 113 (510)
T ss_pred ceeEEEEeccCCCcCcceEEEeechHHHHHHHHh-hHHHhCCceEEEEccCCccccccccCCCCCCCCCCceEEecCCCc
Confidence 5888888888 69999999999999999999984 4445555555553221 11345678899999
Q ss_pred CCChHHHHhhhcCCCceeeeeEEEEcCCCCCCC
Q psy11608 66 KCGTGEHNRVNLGYGKSLATTCVWVDGVAGKCG 98 (99)
Q Consensus 66 ~~s~~~L~~~F~~fG~i~~~~~v~~d~~~g~~~ 98 (99)
.|+++|+.+.|+--=.+..--.+++|+....||
T Consensus 114 scte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tG 146 (510)
T KOG4211|consen 114 SCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTG 146 (510)
T ss_pred cCcHHHHHHHhcCCcccccceeeeccCCCCccc
Confidence 999999999999887664422355788777665
No 90
>KOG0114|consensus
Probab=97.84 E-value=2.7e-05 Score=51.47 Aligned_cols=40 Identities=10% Similarity=0.017 Sum_probs=33.4
Q ss_pred ceEEEEcCCCCCCChHHHHhhhcCCCceeeeeEEEEcCCCC
Q psy11608 55 TTCVWVDGVAGKCGTGEHNRVNLGYGKSLATTCVWVDGVAG 95 (99)
Q Consensus 55 ~~~lfVg~l~~~~s~~~L~~~F~~fG~i~~~~~v~~d~~~g 95 (99)
+.-|||.|||.++|.|+..++|.+||+|.++ .+=.++.|.
T Consensus 18 nriLyirNLp~~ITseemydlFGkyg~IrQI-RiG~~k~Tr 57 (124)
T KOG0114|consen 18 NRILYIRNLPFKITSEEMYDLFGKYGTIRQI-RIGNTKETR 57 (124)
T ss_pred heeEEEecCCccccHHHHHHHhhcccceEEE-EecCccCcC
Confidence 4669999999999999999999999999776 444555554
No 91
>KOG0415|consensus
Probab=97.76 E-value=4e-05 Score=59.75 Aligned_cols=51 Identities=16% Similarity=0.391 Sum_probs=46.9
Q ss_pred ceEEEEEeeCC---CCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecCC
Q psy11608 2 VMYFVDIKKQS---SASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKS 52 (99)
Q Consensus 2 ~I~~v~ik~~~---~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k~ 52 (99)
+|.+|.|.+|- -|..||||+|++.+++++|.-.|++..|..++|-|.|.++
T Consensus 265 ~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDFSQS 318 (479)
T KOG0415|consen 265 KIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDFSQS 318 (479)
T ss_pred cceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeehhhh
Confidence 68899999995 6899999999999999999999999999999999988654
No 92
>KOG0121|consensus
Probab=97.76 E-value=4.9e-05 Score=51.89 Aligned_cols=48 Identities=15% Similarity=0.338 Sum_probs=40.5
Q ss_pred eEEEEEeeCC---CCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeec
Q psy11608 3 MYFVDIKKQS---SASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYG 50 (99)
Q Consensus 3 I~~v~ik~~~---~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~ 50 (99)
|..|.+=-|. ++=|||||+|-..++|+.|++-++|..+..++|++.|.
T Consensus 63 irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D 113 (153)
T KOG0121|consen 63 IRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWD 113 (153)
T ss_pred hheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecc
Confidence 4445554443 67899999999999999999999999999999999864
No 93
>KOG0415|consensus
Probab=97.72 E-value=2.8e-05 Score=60.58 Aligned_cols=44 Identities=14% Similarity=0.129 Sum_probs=39.7
Q ss_pred CCceEEEEcCCCCCCChHHHHhhhcCCCceeeeeEEEEcCCCCCC
Q psy11608 53 LATTCVWVDGVAGKCGTGEHNRVNLGYGKSLATTCVWVDGVAGKC 97 (99)
Q Consensus 53 ~~~~~lfVg~l~~~~s~~~L~~~F~~fG~i~~~~~v~~d~~~g~~ 97 (99)
.|.+-|||.-|.|-++++||+-+||+||+|... .|++|+.||-.
T Consensus 237 PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sc-eVIRD~ktgds 280 (479)
T KOG0415|consen 237 PPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSC-EVIRDRKTGDS 280 (479)
T ss_pred CCcceEEEEecCCcccccchhhHHhhcccceee-eEEecccccch
Confidence 468899999999999999999999999999885 67799999854
No 94
>KOG0226|consensus
Probab=97.63 E-value=5.6e-05 Score=56.49 Aligned_cols=85 Identities=15% Similarity=0.167 Sum_probs=74.4
Q ss_pred CCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecCC----------CCceEEEEcCCCCCCChHHHHhhhcCCCce
Q psy11608 13 SASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKS----------LATTCVWVDGVAGKCGTGEHNRVNLGYGKS 82 (99)
Q Consensus 13 ~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k~----------~~~~~lfVg~l~~~~s~~~L~~~F~~fG~i 82 (99)
.-++++|+.|.+..+-..+..+-+++.++..+||..-+.+ ..+.+||-|.|..+++++.|-+.|.+|-..
T Consensus 138 ~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a~gtswedPsl~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf 217 (290)
T KOG0226|consen 138 PIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLAAGTSWEDPSLAEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSF 217 (290)
T ss_pred ccCcccccCcchhhhhhhhccccccccccCcceeeccccccCCcccccCccccceeecccccccccHHHHHHHHHhccch
Confidence 6789999999999999999999999999999888865542 236799999999999999999999999998
Q ss_pred eeeeEEEEcCCCCCCC
Q psy11608 83 LATTCVWVDGVAGKCG 98 (99)
Q Consensus 83 ~~~~~v~~d~~~g~~~ 98 (99)
.. ..|++|+.||+.+
T Consensus 218 ~~-akviRdkRTgKSk 232 (290)
T KOG0226|consen 218 QK-AKVIRDKRTGKSK 232 (290)
T ss_pred hh-ccccccccccccc
Confidence 76 5777999999875
No 95
>KOG4205|consensus
Probab=97.62 E-value=6.8e-05 Score=57.29 Aligned_cols=43 Identities=12% Similarity=0.191 Sum_probs=37.1
Q ss_pred CceEEEEcCCCCCCChHHHHhhhcCCCceeeeeEEEEcCCCCCC
Q psy11608 54 ATTCVWVDGVAGKCGTGEHNRVNLGYGKSLATTCVWVDGVAGKC 97 (99)
Q Consensus 54 ~~~~lfVg~l~~~~s~~~L~~~F~~fG~i~~~~~v~~d~~~g~~ 97 (99)
...+||||+|+-.++++.|+++|++||+|.+. .+..|+.+|..
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~-~vm~d~~t~rs 47 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDC-VVMRDPSTGRS 47 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeE-EEeccCCCCCc
Confidence 35789999999999999999999999999986 44488888653
No 96
>KOG4210|consensus
Probab=97.60 E-value=0.00012 Score=55.23 Aligned_cols=86 Identities=10% Similarity=0.085 Sum_probs=63.7
Q ss_pred CCCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeec--C------------CCCceEEE-EcCCCCCCChHHHHhhh
Q psy11608 12 SSASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYG--K------------SLATTCVW-VDGVAGKCGTGEHNRVN 76 (99)
Q Consensus 12 ~~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~--k------------~~~~~~lf-Vg~l~~~~s~~~L~~~F 76 (99)
..++||+.++|...+.+..|++..-.+.+.++.+..... . .-+..++| |++|+.++++++|+.+|
T Consensus 127 ~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~~~~~~~~~n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~ 206 (285)
T KOG4210|consen 127 LSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLNTRRGLRPKNKLSRLSSGPSDTIFFVGELDFSLTRDDLKEHF 206 (285)
T ss_pred cccccceeeccccHHHHHHHHHhhhccccccccccCcccccccccccchhcccccCccccceeecccccccchHHHhhhc
Confidence 379999999999999999999865444554443322111 0 11245566 99999999999999999
Q ss_pred cCCCceeeeeEEEEcCCCCCCC
Q psy11608 77 LGYGKSLATTCVWVDGVAGKCG 98 (99)
Q Consensus 77 ~~fG~i~~~~~v~~d~~~g~~~ 98 (99)
..+|.|..+ .+.-++.+|.|.
T Consensus 207 ~~~~~i~~~-r~~~~~~s~~~k 227 (285)
T KOG4210|consen 207 VSSGEITSV-RLPTDEESGDSK 227 (285)
T ss_pred cCcCcceee-ccCCCCCccchh
Confidence 999999764 555678888885
No 97
>KOG0110|consensus
Probab=97.55 E-value=9.3e-05 Score=61.35 Aligned_cols=42 Identities=14% Similarity=0.443 Sum_probs=38.1
Q ss_pred eCCCCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecC
Q psy11608 10 KQSSASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGK 51 (99)
Q Consensus 10 ~~~~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k 51 (99)
+++.+|+||||-|.+.++|+.||+.+|+.+|+-.+|.|..++
T Consensus 4 ~dGk~R~F~FiGf~~eeeA~~Ai~~fn~s~i~ts~i~Ve~~~ 45 (725)
T KOG0110|consen 4 KDGKFRRFGFIGFKSEEEAQKAIKYFNKSFINTSRITVEFCK 45 (725)
T ss_pred CCCceeeeeEeeeccHHHHHHHHHHhhccccccceEEEEehh
Confidence 357899999999999999999999999999999999997543
No 98
>KOG0132|consensus
Probab=97.54 E-value=6.6e-05 Score=62.95 Aligned_cols=31 Identities=13% Similarity=0.364 Sum_probs=29.2
Q ss_pred ceEEEEcCCCCCCChHHHHhhhcCCCceeee
Q psy11608 55 TTCVWVDGVAGKCGTGEHNRVNLGYGKSLAT 85 (99)
Q Consensus 55 ~~~lfVg~l~~~~s~~~L~~~F~~fG~i~~~ 85 (99)
+++||||+|+.+++++||.++|+.||+|+++
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi 451 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSI 451 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeE
Confidence 6899999999999999999999999999765
No 99
>KOG0121|consensus
Probab=97.43 E-value=0.00011 Score=50.27 Aligned_cols=40 Identities=10% Similarity=0.017 Sum_probs=33.6
Q ss_pred CceEEEEcCCCCCCChHHHHhhhcCCCceeeeeEEEEcCCC
Q psy11608 54 ATTCVWVDGVAGKCGTGEHNRVNLGYGKSLATTCVWVDGVA 94 (99)
Q Consensus 54 ~~~~lfVg~l~~~~s~~~L~~~F~~fG~i~~~~~v~~d~~~ 94 (99)
.+.+||||||+-.++|+.+.++|++-|+|-.+ .+=+|+.+
T Consensus 35 ~S~tvyVgNlSfyttEEqiyELFs~cG~irri-iMGLdr~k 74 (153)
T KOG0121|consen 35 KSCTVYVGNLSFYTTEEQIYELFSKCGDIRRI-IMGLDRFK 74 (153)
T ss_pred hcceEEEeeeeeeecHHHHHHHHHhccchhee-EeccccCC
Confidence 47899999999999999999999999999543 44457654
No 100
>KOG0130|consensus
Probab=97.35 E-value=0.00016 Score=49.87 Aligned_cols=41 Identities=17% Similarity=0.200 Sum_probs=36.2
Q ss_pred ceEEEEcCCCCCCChHHHHhhhcCCCceeeeeEEEEcCCCCC
Q psy11608 55 TTCVWVDGVAGKCGTGEHNRVNLGYGKSLATTCVWVDGVAGK 96 (99)
Q Consensus 55 ~~~lfVg~l~~~~s~~~L~~~F~~fG~i~~~~~v~~d~~~g~ 96 (99)
.--|||.|+.+..+++++.+.|..||+|-.+ ++-+|+.||=
T Consensus 72 GwIi~VtgvHeEatEedi~d~F~dyGeiKNi-hLNLDRRtGy 112 (170)
T KOG0130|consen 72 GWIIFVTGVHEEATEEDIHDKFADYGEIKNI-HLNLDRRTGY 112 (170)
T ss_pred eEEEEEeccCcchhHHHHHHHHhhcccccce-eecccccccc
Confidence 3459999999999999999999999999776 6668999984
No 101
>KOG0108|consensus
Probab=97.33 E-value=0.00023 Score=56.62 Aligned_cols=42 Identities=19% Similarity=0.180 Sum_probs=38.3
Q ss_pred eEEEEcCCCCCCChHHHHhhhcCCCceeeeeEEEEcCCCCCCC
Q psy11608 56 TCVWVDGVAGKCGTGEHNRVNLGYGKSLATTCVWVDGVAGKCG 98 (99)
Q Consensus 56 ~~lfVg~l~~~~s~~~L~~~F~~fG~i~~~~~v~~d~~~g~~~ 98 (99)
..+||||+|.++++++|.++|+..|.|..+ .++.|+.||+-.
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~-~~v~D~~tG~~~ 60 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSF-RLVYDRETGKPK 60 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCcccee-eecccccCCCcC
Confidence 689999999999999999999999999987 555999999854
No 102
>KOG0130|consensus
Probab=97.25 E-value=0.0003 Score=48.56 Aligned_cols=48 Identities=15% Similarity=0.324 Sum_probs=40.0
Q ss_pred eEEEEEeeC---CCCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeec
Q psy11608 3 MYFVDIKKQ---SSASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYG 50 (99)
Q Consensus 3 I~~v~ik~~---~~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~ 50 (99)
|-++-+--| +-.+|||.|+|++.++|+.|+.+|||..+-+.+|.|.|+
T Consensus 99 iKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~ 149 (170)
T KOG0130|consen 99 IKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWC 149 (170)
T ss_pred ccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEE
Confidence 444444444 358999999999999999999999999999999999875
No 103
>KOG0151|consensus
Probab=97.22 E-value=0.0004 Score=58.02 Aligned_cols=52 Identities=25% Similarity=0.397 Sum_probs=44.9
Q ss_pred ceEEEEEeeCC------CCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecCCC
Q psy11608 2 VMYFVDIKKQS------SASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKSL 53 (99)
Q Consensus 2 ~I~~v~ik~~~------~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k~~ 53 (99)
||-.|-|.=+. +.+.||||-|-+..+|++|++.|+|..+.+..++++|+++.
T Consensus 200 PlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K~gWgk~V 257 (877)
T KOG0151|consen 200 PLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMKLGWGKAV 257 (877)
T ss_pred cccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeeeecccccc
Confidence 45566666553 67889999999999999999999999999999999999854
No 104
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.22 E-value=0.00058 Score=43.37 Aligned_cols=37 Identities=22% Similarity=0.407 Sum_probs=29.2
Q ss_pred CCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeec
Q psy11608 14 ASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYG 50 (99)
Q Consensus 14 s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~ 50 (99)
+.+-|.|.|.+.+.|++|.+.|+|..+-|++|.|.|.
T Consensus 38 ~~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~ 74 (90)
T PF11608_consen 38 SGGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFS 74 (90)
T ss_dssp -TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS
T ss_pred eCCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEc
Confidence 4588999999999999999999999999999999876
No 105
>KOG0153|consensus
Probab=97.21 E-value=0.00034 Score=54.17 Aligned_cols=34 Identities=9% Similarity=0.188 Sum_probs=30.0
Q ss_pred ceEEEEcCCCCCCChHHHHhhhcCCCceeeeeEE
Q psy11608 55 TTCVWVDGVAGKCGTGEHNRVNLGYGKSLATTCV 88 (99)
Q Consensus 55 ~~~lfVg~l~~~~s~~~L~~~F~~fG~i~~~~~v 88 (99)
.+.||||||-+.+++++|+++|.+||+|..++.+
T Consensus 228 I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~ 261 (377)
T KOG0153|consen 228 IKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRIL 261 (377)
T ss_pred eeEEEecccccchhHHHHHHHHhhcCCeeeEEee
Confidence 4789999999999999999999999999765444
No 106
>KOG0124|consensus
Probab=97.19 E-value=0.00064 Score=53.47 Aligned_cols=50 Identities=14% Similarity=0.299 Sum_probs=45.5
Q ss_pred ceEEEEEeeCC---CCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecC
Q psy11608 2 VMYFVDIKKQS---SASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGK 51 (99)
Q Consensus 2 ~I~~v~ik~~~---~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k 51 (99)
+|..|.+-+++ .++||||++|.+.++...|+..||=.-+||.-+||+..-
T Consensus 236 ~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~v 288 (544)
T KOG0124|consen 236 EIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 288 (544)
T ss_pred ceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEeccccc
Confidence 68899999997 799999999999999999999999999999989888654
No 107
>KOG0132|consensus
Probab=97.18 E-value=0.00067 Score=57.09 Aligned_cols=48 Identities=8% Similarity=0.210 Sum_probs=42.2
Q ss_pred ceEEEEEeeCCCCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecCC
Q psy11608 2 VMYFVDIKKQSSASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKS 52 (99)
Q Consensus 2 ~I~~v~ik~~~~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k~ 52 (99)
.|++|++. .+||||||.+...++|++|+.+|+...+..+.|++.||-.
T Consensus 447 eiqSi~li---~~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g 494 (894)
T KOG0132|consen 447 EIQSIILI---PPRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVG 494 (894)
T ss_pred cceeEeec---cCCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeecc
Confidence 35666665 5799999999999999999999999999999999999754
No 108
>KOG0129|consensus
Probab=97.17 E-value=0.002 Score=52.03 Aligned_cols=74 Identities=20% Similarity=0.239 Sum_probs=51.3
Q ss_pred CeEEEEeCCHHHHHHHHHh----hCCeEe-------CCeEEEEeec------------C-CCCceEEEEcCCCCCCChHH
Q psy11608 16 AFAFVQYTDIASVVRAMRA----MDGEYV-------GHNRVNLGYG------------K-SLATTCVWVDGVAGKCGTGE 71 (99)
Q Consensus 16 gfaFV~F~~~~~a~~Ai~~----m~G~~i-------~~~~i~v~~~------------k-~~~~~~lfVg~l~~~~s~~~ 71 (99)
||.|+.|+++.+.+.=+.+ -...++ ..+.|.|.-+ . -.|.++||||+||.-++.++
T Consensus 307 ~YvflvFe~E~sV~~Ll~aC~~~~~~~yf~vss~~~k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~e 386 (520)
T KOG0129|consen 307 GYVFLVFEDERSVQSLLSACSEGEGNYYFKVSSPTIKDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEE 386 (520)
T ss_pred cEEEEEecchHHHHHHHHHHhhcccceEEEEecCcccccceeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHH
Confidence 3999999999999865543 222233 2233333211 0 12568899999999999999
Q ss_pred HHhhhc-CCCceeeeeEEEEcC
Q psy11608 72 HNRVNL-GYGKSLATTCVWVDG 92 (99)
Q Consensus 72 L~~~F~-~fG~i~~~~~v~~d~ 92 (99)
|-.+|+ -||-|. .+=+|.
T Consensus 387 LA~imd~lyGgV~---yaGIDt 405 (520)
T KOG0129|consen 387 LAMIMEDLFGGVL---YVGIDT 405 (520)
T ss_pred HHHHHHHhcCceE---EEEecc
Confidence 999999 899994 444554
No 109
>KOG4454|consensus
Probab=97.16 E-value=0.00032 Score=51.69 Aligned_cols=74 Identities=16% Similarity=0.144 Sum_probs=59.6
Q ss_pred ceEEEEEeeCC-CCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecCCCCceEEEEcC----CCCCCChHHHHhhh
Q psy11608 2 VMYFVDIKKQS-SASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKSLATTCVWVDG----VAGKCGTGEHNRVN 76 (99)
Q Consensus 2 ~I~~v~ik~~~-~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k~~~~~~lfVg~----l~~~~s~~~L~~~F 76 (99)
||..|.|-++. +..-||||.|.++-+...|++-|||..+.+.++++ +++-|+ |...++++.++..|
T Consensus 35 PV~kv~ip~~~d~~~kFa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~---------~~r~G~shapld~r~~~ei~~~v~ 105 (267)
T KOG4454|consen 35 PVYKVGIPSGQDQEQKFAYVFFPNENSVQLAGQLENGDDLEEDEEQR---------TLRCGNSHAPLDERVTEEILYEVF 105 (267)
T ss_pred ceEEEeCCCCccCCCceeeeecccccchhhhhhhcccchhccchhhc---------ccccCCCcchhhhhcchhhheeee
Confidence 67777776654 33339999999999999999999999998887753 344455 77788999999999
Q ss_pred cCCCceee
Q psy11608 77 LGYGKSLA 84 (99)
Q Consensus 77 ~~fG~i~~ 84 (99)
+.-|++..
T Consensus 106 s~a~p~~~ 113 (267)
T KOG4454|consen 106 SQAGPIEG 113 (267)
T ss_pred cccCCCCC
Confidence 99999854
No 110
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=97.15 E-value=0.00079 Score=43.44 Aligned_cols=41 Identities=20% Similarity=0.408 Sum_probs=34.2
Q ss_pred CCCCeEEEEeCCHHHHHHHHHhhCCeEeC----CeEEEEeecCCC
Q psy11608 13 SASAFAFVQYTDIASVVRAMRAMDGEYVG----HNRVNLGYGKSL 53 (99)
Q Consensus 13 ~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~----~~~i~v~~~k~~ 53 (99)
.+.|||||.|.++++|.+-.+.++|+.+. .|...+.||+.+
T Consensus 43 ~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i~yAriQ 87 (97)
T PF04059_consen 43 CNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEISYARIQ 87 (97)
T ss_pred CceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEEehhHhh
Confidence 68999999999999999999999999775 355667777643
No 111
>KOG0151|consensus
Probab=97.06 E-value=0.00044 Score=57.82 Aligned_cols=35 Identities=17% Similarity=0.235 Sum_probs=31.9
Q ss_pred ceEEEEcCCCCCCChHHHHhhhcCCCceeeeeEEE
Q psy11608 55 TTCVWVDGVAGKCGTGEHNRVNLGYGKSLATTCVW 89 (99)
Q Consensus 55 ~~~lfVg~l~~~~s~~~L~~~F~~fG~i~~~~~v~ 89 (99)
+++||||||++.++++.|-..|.+||+|..+..+|
T Consensus 174 TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimw 208 (877)
T KOG0151|consen 174 TTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMW 208 (877)
T ss_pred ccceeeecCCccccHHHHHHHhcccCcccceeeec
Confidence 68999999999999999999999999998876554
No 112
>KOG0111|consensus
Probab=97.04 E-value=0.00025 Score=52.44 Aligned_cols=41 Identities=15% Similarity=0.170 Sum_probs=36.7
Q ss_pred ceEEEEcCCCCCCChHHHHhhhcCCCceeeeeEEEEcCCCCC
Q psy11608 55 TTCVWVDGVAGKCGTGEHNRVNLGYGKSLATTCVWVDGVAGK 96 (99)
Q Consensus 55 ~~~lfVg~l~~~~s~~~L~~~F~~fG~i~~~~~v~~d~~~g~ 96 (99)
.+.||||||...++|.-|...|-+||.|..+ .+.+|.+++|
T Consensus 10 KrtlYVGGladeVtekvLhaAFIPFGDI~dI-qiPlDyesqk 50 (298)
T KOG0111|consen 10 KRTLYVGGLADEVTEKVLHAAFIPFGDIKDI-QIPLDYESQK 50 (298)
T ss_pred ceeEEeccchHHHHHHHHHhccccccchhhc-ccccchhccc
Confidence 4679999999999999999999999999887 5668988875
No 113
>KOG0120|consensus
Probab=97.00 E-value=0.00085 Score=54.19 Aligned_cols=83 Identities=17% Similarity=0.253 Sum_probs=64.9
Q ss_pred CCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecC---------------------------CCCceEEEEcCCCC
Q psy11608 13 SASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGK---------------------------SLATTCVWVDGVAG 65 (99)
Q Consensus 13 ~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k---------------------------~~~~~~lfVg~l~~ 65 (99)
..++|+|++|.+.++|..|+. ++|..+.|.++++.... +..-.++|||+||.
T Consensus 221 ~~~nfa~ie~~s~~~at~~~~-~~~~~f~g~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~ 299 (500)
T KOG0120|consen 221 LEKNFAFIEFRSISEATEAMA-LDGIIFEGRPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPL 299 (500)
T ss_pred ccccceeEEecCCCchhhhhc-ccchhhCCCCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcC
Confidence 678999999999999999885 67776666665553210 01136899999999
Q ss_pred CCChHHHHhhhcCCCceeeeeEEEEcCCCCCC
Q psy11608 66 KCGTGEHNRVNLGYGKSLATTCVWVDGVAGKC 97 (99)
Q Consensus 66 ~~s~~~L~~~F~~fG~i~~~~~v~~d~~~g~~ 97 (99)
.++++.+++.-+.||++... .++.|..+|..
T Consensus 300 ~l~~~q~~Ell~~fg~lk~f-~lv~d~~~g~s 330 (500)
T KOG0120|consen 300 YLTEDQVKELLDSFGPLKAF-RLVKDSATGNS 330 (500)
T ss_pred ccCHHHHHHHHHhcccchhh-eeecccccccc
Confidence 99999999999999999765 55588887654
No 114
>KOG1456|consensus
Probab=96.99 E-value=0.009 Score=47.17 Aligned_cols=48 Identities=21% Similarity=0.311 Sum_probs=35.8
Q ss_pred ceEEEEEeeCCCCCCeEEEEeCCHHHHHHHHHhhCCeEeCC--eEEEEeecC
Q psy11608 2 VMYFVDIKKQSSASAFAFVQYTDIASVVRAMRAMDGEYVGH--NRVNLGYGK 51 (99)
Q Consensus 2 ~I~~v~ik~~~~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~--~~i~v~~~k 51 (99)
.|+.|+|-+. .--.|.|+|++.+.|++|.++|||--|.. =.+||.|+|
T Consensus 148 kVlRIvIfkk--ngVQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIeyAk 197 (494)
T KOG1456|consen 148 KVLRIVIFKK--NGVQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIEYAK 197 (494)
T ss_pred ceEEEEEEec--cceeeEEeechhHHHHHHHhhcccccccccceeEEEEecC
Confidence 4667777663 33469999999999999999999986643 355665554
No 115
>KOG2193|consensus
Probab=96.98 E-value=0.00014 Score=57.96 Aligned_cols=79 Identities=15% Similarity=0.167 Sum_probs=67.8
Q ss_pred CCeEEEEeCCHHHHHHHHHhhCCe-EeCCeEEEEeecCC--CCceEEEEcCCCCCCChHHHHhhhcCCCceeeeeEEEEc
Q psy11608 15 SAFAFVQYTDIASVVRAMRAMDGE-YVGHNRVNLGYGKS--LATTCVWVDGVAGKCGTGEHNRVNLGYGKSLATTCVWVD 91 (99)
Q Consensus 15 ~gfaFV~F~~~~~a~~Ai~~m~G~-~i~~~~i~v~~~k~--~~~~~lfVg~l~~~~s~~~L~~~F~~fG~i~~~~~v~~d 91 (99)
-||+||..-|..-|.+|++.++|+ .+.|+++.+.+.-+ ..++++-|.|+|+..-++-|.++..+||.++.+..+-.|
T Consensus 37 ~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~kkqrsrk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~ 116 (584)
T KOG2193|consen 37 SGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPKKQRSRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTD 116 (584)
T ss_pred cceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhHHHHhhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccc
Confidence 499999999999999999999997 78899988776432 347889999999999999999999999999877666555
Q ss_pred CC
Q psy11608 92 GV 93 (99)
Q Consensus 92 ~~ 93 (99)
..
T Consensus 117 ~e 118 (584)
T KOG2193|consen 117 SE 118 (584)
T ss_pred hH
Confidence 44
No 116
>KOG0153|consensus
Probab=96.95 E-value=0.0023 Score=49.67 Aligned_cols=47 Identities=17% Similarity=0.317 Sum_probs=37.8
Q ss_pred eEEEEEeeCCCCCCeEEEEeCCHHHHHHHHHh-hCCeEeCCeEEEEeecCC
Q psy11608 3 MYFVDIKKQSSASAFAFVQYTDIASVVRAMRA-MDGEYVGHNRVNLGYGKS 52 (99)
Q Consensus 3 I~~v~ik~~~~s~gfaFV~F~~~~~a~~Ai~~-m~G~~i~~~~i~v~~~k~ 52 (99)
|++|.+- ..+++|||+|.+.++|+.|.++ +|-..|.|.+|+|.|+++
T Consensus 255 irsi~~~---~~~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg~~ 302 (377)
T KOG0153|consen 255 IRSIRIL---PRKGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWGRP 302 (377)
T ss_pred eeeEEee---cccccceeeehhhHHHHHHHHhhcceeeecceEEEEEeCCC
Confidence 4455544 4578999999999999998876 565588999999999876
No 117
>KOG0116|consensus
Probab=96.90 E-value=0.0011 Score=52.50 Aligned_cols=33 Identities=12% Similarity=0.116 Sum_probs=28.9
Q ss_pred eEEEEcCCCCCCChHHHHhhhcCCCceeeeeEE
Q psy11608 56 TCVWVDGVAGKCGTGEHNRVNLGYGKSLATTCV 88 (99)
Q Consensus 56 ~~lfVg~l~~~~s~~~L~~~F~~fG~i~~~~~v 88 (99)
..|||+|||.++++++|++.|.+||+|.+...-
T Consensus 289 ~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~ 321 (419)
T KOG0116|consen 289 LGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQ 321 (419)
T ss_pred cceEeecCCCCCCHHHHHHHHhhcccccccceE
Confidence 349999999999999999999999999765433
No 118
>KOG0533|consensus
Probab=96.86 E-value=0.0012 Score=48.95 Aligned_cols=43 Identities=16% Similarity=0.123 Sum_probs=35.2
Q ss_pred ceEEEEcCCCCCCChHHHHhhhcCCCceeeeeEEEEcCCCCCCC
Q psy11608 55 TTCVWVDGVAGKCGTGEHNRVNLGYGKSLATTCVWVDGVAGKCG 98 (99)
Q Consensus 55 ~~~lfVg~l~~~~s~~~L~~~F~~fG~i~~~~~v~~d~~~g~~~ 98 (99)
.++|+|.|||..++++||+++|..||++.. +.|..|+.+...|
T Consensus 83 ~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r-~~vhy~~~G~s~G 125 (243)
T KOG0533|consen 83 STKVNVSNLPYGVIDADLKELFAEFGELKR-VAVHYDRAGRSLG 125 (243)
T ss_pred cceeeeecCCcCcchHHHHHHHHHhccceE-EeeccCCCCCCCc
Confidence 467999999999999999999999998855 4666788654433
No 119
>KOG4212|consensus
Probab=96.81 E-value=0.0014 Score=52.59 Aligned_cols=44 Identities=18% Similarity=0.384 Sum_probs=38.6
Q ss_pred EEEEEeeCCCCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEee
Q psy11608 4 YFVDIKKQSSASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGY 49 (99)
Q Consensus 4 ~~v~ik~~~~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~ 49 (99)
.-.+|+-.++++| -|.|.++++|++|+..|||..+.++.|+|.|
T Consensus 564 ~yadime~GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I~V~y 607 (608)
T KOG4212|consen 564 LYADIMENGKSKG--VVRFFSPEDAERACALMNGSRLDGRNIKVTY 607 (608)
T ss_pred ehhhhhccCCccc--eEEecCHHHHHHHHHHhccCcccCceeeeee
Confidence 4456666667887 9999999999999999999999999999986
No 120
>KOG4209|consensus
Probab=96.73 E-value=0.0022 Score=47.13 Aligned_cols=47 Identities=19% Similarity=0.379 Sum_probs=39.8
Q ss_pred eEEEEEeeCC---CCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeec
Q psy11608 3 MYFVDIKKQS---SASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYG 50 (99)
Q Consensus 3 I~~v~ik~~~---~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~ 50 (99)
|..|+|..|. +++||+||.|.+.+.++.|++ |||-.+.++.+.+.+.
T Consensus 128 i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~~ 177 (231)
T KOG4209|consen 128 INRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTLK 177 (231)
T ss_pred ccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeeee
Confidence 3446677774 689999999999999999999 9999999998877653
No 121
>KOG4206|consensus
Probab=96.72 E-value=0.0015 Score=47.79 Aligned_cols=32 Identities=19% Similarity=0.332 Sum_probs=29.3
Q ss_pred CceEEEEcCCCCCCChHHHHh----hhcCCCceeee
Q psy11608 54 ATTCVWVDGVAGKCGTGEHNR----VNLGYGKSLAT 85 (99)
Q Consensus 54 ~~~~lfVg~l~~~~s~~~L~~----~F~~fG~i~~~ 85 (99)
|+.+|||.||++.+..++|++ +||+||+|+++
T Consensus 8 pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI 43 (221)
T KOG4206|consen 8 PNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDI 43 (221)
T ss_pred CCceEeehhccccccHHHHHHHHHHHHHhhCCeEEE
Confidence 556999999999999999999 99999999765
No 122
>KOG0120|consensus
Probab=96.68 E-value=0.0051 Score=49.79 Aligned_cols=48 Identities=23% Similarity=0.409 Sum_probs=39.7
Q ss_pred ceEEEEEeeC-C-----CCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEee
Q psy11608 2 VMYFVDIKKQ-S-----SASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGY 49 (99)
Q Consensus 2 ~I~~v~ik~~-~-----~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~ 49 (99)
.|.+|.|=++ . -+-|-=||+|.+.+++++|+++|.|..+.++.|...|
T Consensus 435 ~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsY 488 (500)
T KOG0120|consen 435 AVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASY 488 (500)
T ss_pred ceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEe
Confidence 4566777666 2 3556669999999999999999999999999998766
No 123
>KOG4661|consensus
Probab=96.64 E-value=0.0013 Score=54.29 Aligned_cols=38 Identities=18% Similarity=0.363 Sum_probs=32.1
Q ss_pred CceEEEEcCCCCCCChHHHHhhhcCCCceeeeeEEEEcC
Q psy11608 54 ATTCVWVDGVAGKCGTGEHNRVNLGYGKSLATTCVWVDG 92 (99)
Q Consensus 54 ~~~~lfVg~l~~~~s~~~L~~~F~~fG~i~~~~~v~~d~ 92 (99)
-..+|||.||+..+-..||+.+|++||+|+-. .|+.+.
T Consensus 404 ~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGA-KVVTNa 441 (940)
T KOG4661|consen 404 LGRNLWVSGLSSTTRATDLKNLFSKYGKVVGA-KVVTNA 441 (940)
T ss_pred cccceeeeccccchhhhHHHHHHHHhcceece-eeeecC
Confidence 35789999999999999999999999999875 443443
No 124
>KOG4660|consensus
Probab=96.54 E-value=0.0014 Score=53.20 Aligned_cols=33 Identities=12% Similarity=0.087 Sum_probs=29.8
Q ss_pred CCceEEEEcCCCCCCChHHHHhhhcCCCceeee
Q psy11608 53 LATTCVWVDGVAGKCGTGEHNRVNLGYGKSLAT 85 (99)
Q Consensus 53 ~~~~~lfVg~l~~~~s~~~L~~~F~~fG~i~~~ 85 (99)
.+...|||-|||+++++++|++.|+.||+|-++
T Consensus 73 ~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~i 105 (549)
T KOG4660|consen 73 MNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREI 105 (549)
T ss_pred CccceEEEEecCCcCCHHHHHHHHHhhcchhhh
Confidence 456789999999999999999999999999653
No 125
>KOG1548|consensus
Probab=96.47 E-value=0.0029 Score=49.12 Aligned_cols=29 Identities=24% Similarity=0.275 Sum_probs=27.2
Q ss_pred ceEEEEcCCCCCCChHHHHhhhcCCCcee
Q psy11608 55 TTCVWVDGVAGKCGTGEHNRVNLGYGKSL 83 (99)
Q Consensus 55 ~~~lfVg~l~~~~s~~~L~~~F~~fG~i~ 83 (99)
+++|||.|||.++|.++..++|+++|-|.
T Consensus 134 Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~ 162 (382)
T KOG1548|consen 134 NTSVYVSGLPLDITVDEFAEVMSKCGIIM 162 (382)
T ss_pred CceEEecCCCCcccHHHHHHHHHhcceEe
Confidence 67899999999999999999999999884
No 126
>KOG0128|consensus
Probab=96.32 E-value=0.0022 Score=54.44 Aligned_cols=62 Identities=15% Similarity=0.122 Sum_probs=53.8
Q ss_pred CCCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecCCCCceEEEEcCCCCCCChHHHHhhhcCCCceeeee
Q psy11608 12 SSASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKSLATTCVWVDGVAGKCGTGEHNRVNLGYGKSLATT 86 (99)
Q Consensus 12 ~~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k~~~~~~lfVg~l~~~~s~~~L~~~F~~fG~i~~~~ 86 (99)
++-||+|++.|.+++++.+|+.-.++..++ ...++|.|.|...|.+.|+.+++.+|++.+..
T Consensus 706 ~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~g-------------K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~ 767 (881)
T KOG0128|consen 706 KRFRGKAYVEFLKPEHAGAAVAFRDSCFFG-------------KISVAISGPPFQGTKEELKSLASKTGNVTSLR 767 (881)
T ss_pred cccccceeeEeecCCchhhhhhhhhhhhhh-------------hhhhheeCCCCCCchHHHHhhccccCCccccc
Confidence 367899999999999999999876665554 35799999999999999999999999997653
No 127
>KOG4207|consensus
Probab=96.28 E-value=0.0031 Score=46.26 Aligned_cols=41 Identities=20% Similarity=0.188 Sum_probs=35.4
Q ss_pred ceEEEEcCCCCCCChHHHHhhhcCCCceeeeeEEEEcCCCCC
Q psy11608 55 TTCVWVDGVAGKCGTGEHNRVNLGYGKSLATTCVWVDGVAGK 96 (99)
Q Consensus 55 ~~~lfVg~l~~~~s~~~L~~~F~~fG~i~~~~~v~~d~~~g~ 96 (99)
.+.|-|-||..-++.++|+.+|++||.|-++ .+..|+-|+.
T Consensus 13 m~SLkVdNLTyRTspd~LrrvFekYG~vgDV-yIPrdr~Tr~ 53 (256)
T KOG4207|consen 13 MTSLKVDNLTYRTSPDDLRRVFEKYGRVGDV-YIPRDRYTRQ 53 (256)
T ss_pred ceeEEecceeccCCHHHHHHHHHHhCcccce-eccccccccc
Confidence 4679999999999999999999999999876 5557887764
No 128
>KOG1456|consensus
Probab=96.16 E-value=0.055 Score=42.86 Aligned_cols=79 Identities=13% Similarity=0.027 Sum_probs=64.3
Q ss_pred ceEEEEEeeCCCCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecCC-----------------------------
Q psy11608 2 VMYFVDIKKQSSASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKS----------------------------- 52 (99)
Q Consensus 2 ~I~~v~ik~~~~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k~----------------------------- 52 (99)
+|+.|..++ .-.|-|.|++.|..+.++|+.+||+..+-|.++.+...+.
T Consensus 314 NV~rvkFmk--Tk~gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~SkQ~~v~~~~pflLpDgSpSfKdys~SkNnRF 391 (494)
T KOG1456|consen 314 NVERVKFMK--TKPGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCVSKQNFVSPVQPFLLPDGSPSFKDYSGSKNNRF 391 (494)
T ss_pred ceeeEEEee--cccceeEEEcCcHHHHHHHHHHhccCccccceEEEeeccccccccCCceecCCCCcchhhccccccccc
Confidence 567776666 4568899999999999999999999988887777654321
Q ss_pred ------------CCceEEEEcCCCCCCChHHHHhhhcCCCce
Q psy11608 53 ------------LATTCVWVDGVAGKCGTGEHNRVNLGYGKS 82 (99)
Q Consensus 53 ------------~~~~~lfVg~l~~~~s~~~L~~~F~~fG~i 82 (99)
.|++.|.-=|-|..+|||.|-++|..-+.-
T Consensus 392 ssp~qAsKNrIq~Ps~vLHffNaP~~vtEe~l~~i~nek~v~ 433 (494)
T KOG1456|consen 392 SSPEQASKNRIQPPSNVLHFFNAPLGVTEEQLIGICNEKDVP 433 (494)
T ss_pred CChhHhhcccccCCcceeEEecCCCccCHHHHHHHhhhcCCC
Confidence 246778888999999999999999887765
No 129
>KOG1996|consensus
Probab=96.10 E-value=0.007 Score=46.44 Aligned_cols=33 Identities=24% Similarity=0.559 Sum_probs=30.1
Q ss_pred eEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEee
Q psy11608 17 FAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGY 49 (99)
Q Consensus 17 faFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~ 49 (99)
--||+|...++|.+|+-.|||+++||+.++..|
T Consensus 331 RiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~F 363 (378)
T KOG1996|consen 331 RIFVEFERVESAIKAVVDLNGRYFGGRVVSACF 363 (378)
T ss_pred eeeeeeccHHHHHHHHHhcCCceecceeeehee
Confidence 359999999999999999999999999988654
No 130
>KOG0129|consensus
Probab=95.99 E-value=0.0047 Score=49.93 Aligned_cols=28 Identities=18% Similarity=0.197 Sum_probs=27.0
Q ss_pred ceEEEEcCCCCCCChHHHHhhhcCCCce
Q psy11608 55 TTCVWVDGVAGKCGTGEHNRVNLGYGKS 82 (99)
Q Consensus 55 ~~~lfVg~l~~~~s~~~L~~~F~~fG~i 82 (99)
+.+|||||||.+++|+.|..-|.+||.+
T Consensus 259 S~KVFvGGlp~dise~~i~~~F~~FGs~ 286 (520)
T KOG0129|consen 259 SRKVFVGGLPWDITEAQINASFGQFGSV 286 (520)
T ss_pred ccceeecCCCccccHHHHHhhcccccce
Confidence 6789999999999999999999999988
No 131
>KOG4660|consensus
Probab=95.99 E-value=0.0037 Score=50.84 Aligned_cols=71 Identities=15% Similarity=0.207 Sum_probs=55.4
Q ss_pred CCCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecC----------------------CCCc----eEEEEcCCCC
Q psy11608 12 SSASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGK----------------------SLAT----TCVWVDGVAG 65 (99)
Q Consensus 12 ~~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k----------------------~~~~----~~lfVg~l~~ 65 (99)
+..+|-.||+|-|..+|++|+++|++..+.+++++...+- +.|. ..+| |.|+|
T Consensus 109 ~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~p~a~s~pgg~~~~~~~-g~l~P 187 (549)
T KOG4660|consen 109 PNKRGIVFVEFYDVRDAERALKALNRREIAGKRIKRPGGARRAMGLQSGTSFLNHFGSPLANSPPGGWPRGQLF-GMLSP 187 (549)
T ss_pred cccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhcCCCcccccchhcccchhhhhccchhhcCCCCCCcCCcce-eeecc
Confidence 4788999999999999999999999999999888732110 0111 1233 33999
Q ss_pred CCChHHHHhhhcCCCcee
Q psy11608 66 KCGTGEHNRVNLGYGKSL 83 (99)
Q Consensus 66 ~~s~~~L~~~F~~fG~i~ 83 (99)
..+...++..|+.+|.+.
T Consensus 188 ~~s~~~~~~~~~~~~~~~ 205 (549)
T KOG4660|consen 188 TRSSILLEHISSVDGSSP 205 (549)
T ss_pred chhhhhhhcchhccCccc
Confidence 999999999999999874
No 132
>KOG1548|consensus
Probab=95.52 E-value=0.039 Score=43.03 Aligned_cols=45 Identities=11% Similarity=0.238 Sum_probs=37.4
Q ss_pred eEEEEEeeCCCCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEe
Q psy11608 3 MYFVDIKKQSSASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLG 48 (99)
Q Consensus 3 I~~v~ik~~~~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~ 48 (99)
|.+|+| -+..+.|-+=|.|.+.++|+.+|+.|+|++++++.|-..
T Consensus 303 v~~vvv-~d~hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~ 347 (382)
T KOG1548|consen 303 VRKVVV-YDRHPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTAS 347 (382)
T ss_pred cceEEE-eccCCCceeEEEeCChHHHHHHHHHhcCeeecceEEEEE
Confidence 344443 456788999999999999999999999999999998543
No 133
>KOG4661|consensus
Probab=95.46 E-value=0.022 Score=47.24 Aligned_cols=46 Identities=11% Similarity=0.208 Sum_probs=39.9
Q ss_pred EeeCCCCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecCCC
Q psy11608 8 IKKQSSASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKSL 53 (99)
Q Consensus 8 ik~~~~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k~~ 53 (99)
.-+.|..+.||||++.+.++|-+.|++|+-..++|+-|.|..++..
T Consensus 440 NaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaKNE 485 (940)
T KOG4661|consen 440 NARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAKNE 485 (940)
T ss_pred cCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeecccC
Confidence 3455678899999999999999999999999999999999876643
No 134
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=95.44 E-value=0.057 Score=34.27 Aligned_cols=59 Identities=12% Similarity=0.148 Sum_probs=41.3
Q ss_pred EEEEeCCHHHHHHHHHhhCC-eEeCCeEEEEeec-------------CCCCceEEEEcCCCCCCChHHHHhhh
Q psy11608 18 AFVQYTDIASVVRAMRAMDG-EYVGHNRVNLGYG-------------KSLATTCVWVDGVAGKCGTGEHNRVN 76 (99)
Q Consensus 18 aFV~F~~~~~a~~Ai~~m~G-~~i~~~~i~v~~~-------------k~~~~~~lfVg~l~~~~s~~~L~~~F 76 (99)
|.|+|.++.-|++-++.=.. ..+++..++|.-. .....++|-|.|||...++++|++..
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P~~~~~~~k~qv~~~vs~rtVlvsgip~~l~ee~l~D~L 73 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSPVTLGHLQKFQVFSGVSKRTVLVSGIPDVLDEEELRDKL 73 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEeEecCCceEEEEEEcccCCEEEEeCCCCCCChhhheeeE
Confidence 67999999999998864222 2455554444211 01235789999999999999999864
No 135
>smart00361 RRM_1 RNA recognition motif.
Probab=95.35 E-value=0.022 Score=33.72 Aligned_cols=27 Identities=15% Similarity=0.233 Sum_probs=22.5
Q ss_pred ChHHHHhhhc----CCCceeeeeEEEEcCCC
Q psy11608 68 GTGEHNRVNL----GYGKSLATTCVWVDGVA 94 (99)
Q Consensus 68 s~~~L~~~F~----~fG~i~~~~~v~~d~~~ 94 (99)
.+++|++.|+ +||+|.++..+.+|+.+
T Consensus 1 ~~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~ 31 (70)
T smart00361 1 KDEDFEREFSEEEEYFGEVGKINKIYIDNVG 31 (70)
T ss_pred CchhHHHHHHHHHHhcCCeeEEEEEEeCCCC
Confidence 3689999999 99999887667788866
No 136
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=95.20 E-value=0.042 Score=34.80 Aligned_cols=35 Identities=9% Similarity=0.248 Sum_probs=24.7
Q ss_pred ceEEEEcCCCCCCChHHHHhhhcCCCceeeeeEEEEcCC
Q psy11608 55 TTCVWVDGVAGKCGTGEHNRVNLGYGKSLATTCVWVDGV 93 (99)
Q Consensus 55 ~~~lfVg~l~~~~s~~~L~~~F~~fG~i~~~~~v~~d~~ 93 (99)
++-.+|. .|..+...||.++|+.||.| ..-++|..
T Consensus 9 dHVFhlt-FPkeWK~~DI~qlFspfG~I---~VsWi~dT 43 (87)
T PF08675_consen 9 DHVFHLT-FPKEWKTSDIYQLFSPFGQI---YVSWINDT 43 (87)
T ss_dssp CCEEEEE---TT--HHHHHHHCCCCCCE---EEEEECTT
T ss_pred ceEEEEe-CchHhhhhhHHHHhccCCcE---EEEEEcCC
Confidence 4556777 99999999999999999999 45566653
No 137
>KOG3152|consensus
Probab=94.98 E-value=0.027 Score=42.30 Aligned_cols=37 Identities=14% Similarity=0.192 Sum_probs=31.5
Q ss_pred CceEEEEcCCCCCCChHHHHhhhcCCCceeeeeEEEEcCC
Q psy11608 54 ATTCVWVDGVAGKCGTGEHNRVNLGYGKSLATTCVWVDGV 93 (99)
Q Consensus 54 ~~~~lfVg~l~~~~s~~~L~~~F~~fG~i~~~~~v~~d~~ 93 (99)
.+.-||++++||.++..-|+++|++||.| -.|.+.+.
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeV---GRvylqpE 109 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEV---GRVYLQPE 109 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhcccc---ceEEecch
Confidence 35679999999999999999999999999 46666543
No 138
>KOG2314|consensus
Probab=94.93 E-value=0.029 Score=46.29 Aligned_cols=36 Identities=17% Similarity=0.502 Sum_probs=31.0
Q ss_pred CCCCCeEEEEeCCHHHHHHHHHhhCCeEeCCe-EEEE
Q psy11608 12 SSASAFAFVQYTDIASVVRAMRAMDGEYVGHN-RVNL 47 (99)
Q Consensus 12 ~~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~-~i~v 47 (99)
+.++||.|++|.+..+|+.|++.+||+.+..+ +..+
T Consensus 102 ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf~v 138 (698)
T KOG2314|consen 102 GGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTFFV 138 (698)
T ss_pred CCeeeEEEEEecChhhHHHHHHhcccceecccceEEe
Confidence 37899999999999999999999999988764 3444
No 139
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=94.69 E-value=0.036 Score=35.94 Aligned_cols=26 Identities=8% Similarity=0.152 Sum_probs=17.2
Q ss_pred EEEEcCCCCCCChHHHHhhhcCCCce
Q psy11608 57 CVWVDGVAGKCGTGEHNRVNLGYGKS 82 (99)
Q Consensus 57 ~lfVg~l~~~~s~~~L~~~F~~fG~i 82 (99)
-|.+.|+++.++.++|++.|++||.|
T Consensus 3 il~~~g~~~~~~re~iK~~f~~~g~V 28 (105)
T PF08777_consen 3 ILKFSGLGEPTSREDIKEAFSQFGEV 28 (105)
T ss_dssp EEEEEE--SS--HHHHHHHT-SS--E
T ss_pred EEEEecCCCCcCHHHHHHHHHhcCCc
Confidence 37788899999999999999999988
No 140
>KOG0106|consensus
Probab=94.62 E-value=0.023 Score=41.60 Aligned_cols=30 Identities=20% Similarity=0.317 Sum_probs=27.2
Q ss_pred eEEEEcCCCCCCChHHHHhhhcCCCceeee
Q psy11608 56 TCVWVDGVAGKCGTGEHNRVNLGYGKSLAT 85 (99)
Q Consensus 56 ~~lfVg~l~~~~s~~~L~~~F~~fG~i~~~ 85 (99)
.++|||+||..+.+.||++.|..||.+-.+
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~ 31 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDA 31 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccc
Confidence 379999999999999999999999999543
No 141
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=94.09 E-value=0.15 Score=40.09 Aligned_cols=33 Identities=18% Similarity=0.505 Sum_probs=31.6
Q ss_pred EEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecC
Q psy11608 19 FVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGK 51 (99)
Q Consensus 19 FV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k 51 (99)
||+|...++|.++|.+.||..++|+-++..||.
T Consensus 169 YITy~~kedAarcIa~vDgs~~DGr~lkatYGT 201 (480)
T COG5175 169 YITYSTKEDAARCIAEVDGSLLDGRVLKATYGT 201 (480)
T ss_pred EEEecchHHHHHHHHHhccccccCceEeeecCc
Confidence 999999999999999999999999999998874
No 142
>KOG2202|consensus
Probab=93.98 E-value=0.033 Score=41.64 Aligned_cols=37 Identities=5% Similarity=0.188 Sum_probs=33.2
Q ss_pred CCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEee
Q psy11608 13 SASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGY 49 (99)
Q Consensus 13 ~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~ 49 (99)
.-+|=.+|+|...++|++|++.|||.++.|++|-..+
T Consensus 108 hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~ 144 (260)
T KOG2202|consen 108 HLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAEL 144 (260)
T ss_pred hhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeee
Confidence 4567789999999999999999999999999987654
No 143
>KOG1365|consensus
Probab=93.80 E-value=0.064 Score=42.63 Aligned_cols=86 Identities=13% Similarity=0.182 Sum_probs=59.2
Q ss_pred EEee-CCCCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEe----------------------------------ecC
Q psy11608 7 DIKK-QSSASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLG----------------------------------YGK 51 (99)
Q Consensus 7 ~ik~-~~~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~----------------------------------~~k 51 (99)
.+++ |++..|=|||.|..+++|+.|+..-. ..+|.+=|.+- ...
T Consensus 197 FV~rpdgrpTGdAFvlfa~ee~aq~aL~khr-q~iGqRYIElFRSTaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p 275 (508)
T KOG1365|consen 197 FVTRPDGRPTGDAFVLFACEEDAQFALRKHR-QNIGQRYIELFRSTAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVP 275 (508)
T ss_pred EEECCCCCcccceEEEecCHHHHHHHHHHHH-HHHhHHHHHHHHHhHHHHHHHHHhhccccccCCCCCCCCCCCccccCC
Confidence 4666 67999999999999999999996411 11222111100 000
Q ss_pred -CCCceEEEEcCCCCCCChHHHHhhhcCCCceeee--eEEEEcCC
Q psy11608 52 -SLATTCVWVDGVAGKCGTGEHNRVNLGYGKSLAT--TCVWVDGV 93 (99)
Q Consensus 52 -~~~~~~lfVg~l~~~~s~~~L~~~F~~fG~i~~~--~~v~~d~~ 93 (99)
..+..+|-..|||...+.+|+-+.|..|-.-+.. .+++++..
T Consensus 276 ~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~q 320 (508)
T KOG1365|consen 276 PTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNGQ 320 (508)
T ss_pred CCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcCC
Confidence 1124679999999999999999999999887766 45656543
No 144
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=93.63 E-value=0.056 Score=30.86 Aligned_cols=28 Identities=14% Similarity=0.137 Sum_probs=21.6
Q ss_pred eEEEEcCCCCCCChHHHHhhhcCCCceee
Q psy11608 56 TCVWVDGVAGKCGTGEHNRVNLGYGKSLA 84 (99)
Q Consensus 56 ~~lfVg~l~~~~s~~~L~~~F~~fG~i~~ 84 (99)
+.|=|.|.|++..+. +..+|.+||+|..
T Consensus 2 ~wI~V~Gf~~~~~~~-vl~~F~~fGeI~~ 29 (53)
T PF14605_consen 2 TWISVSGFPPDLAEE-VLEHFASFGEIVD 29 (53)
T ss_pred cEEEEEeECchHHHH-HHHHHHhcCCEEE
Confidence 567788999886654 4559999999954
No 145
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=93.46 E-value=0.079 Score=29.63 Aligned_cols=14 Identities=7% Similarity=0.090 Sum_probs=10.7
Q ss_pred HHhhhcCCCceeee
Q psy11608 72 HNRVNLGYGKSLAT 85 (99)
Q Consensus 72 L~~~F~~fG~i~~~ 85 (99)
|.++|++||+|.++
T Consensus 1 L~~~f~~fG~V~~i 14 (56)
T PF13893_consen 1 LYKLFSKFGEVKKI 14 (56)
T ss_dssp HHHHHTTTS-EEEE
T ss_pred ChHHhCCcccEEEE
Confidence 78999999999543
No 146
>KOG4676|consensus
Probab=93.14 E-value=0.065 Score=42.55 Aligned_cols=68 Identities=16% Similarity=0.143 Sum_probs=51.8
Q ss_pred CeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecCCC------------------------------------------
Q psy11608 16 AFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKSL------------------------------------------ 53 (99)
Q Consensus 16 gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k~~------------------------------------------ 53 (99)
--|||.|.|.+.+.-|.+--|-++++---|.+.|+...
T Consensus 53 RtcyVkf~d~~sv~vaQhLtntvfvdraliv~p~~~~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ai 132 (479)
T KOG4676|consen 53 RTCYVKFLDSQSVTVAQHLTNTVFVDRALIVRPYGDEVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAI 132 (479)
T ss_pred eeEEEeccCCcceeHHhhhccceeeeeeEEEEecCCCCCccHHHHHhcCcccccccccCCCCccCCCCccccccCCccce
Confidence 45999999999999888766656666555555442110
Q ss_pred ---C--------------ceEEEEcCCCCCCChHHHHhhhcCCCcee
Q psy11608 54 ---A--------------TTCVWVDGVAGKCGTGEHNRVNLGYGKSL 83 (99)
Q Consensus 54 ---~--------------~~~lfVg~l~~~~s~~~L~~~F~~fG~i~ 83 (99)
| ...++|++|+..+...++-+.|..||+|.
T Consensus 133 lktP~Lp~~~~A~kleeirRt~~v~sl~~~~~l~e~~e~f~r~Gev~ 179 (479)
T KOG4676|consen 133 LKTPELPPQAAAKKLEEIRRTREVQSLISAAILPESGESFERKGEVS 179 (479)
T ss_pred ecCCCCChHhhhhhhHHHHhhhhhhcchhhhcchhhhhhhhhcchhh
Confidence 0 24599999999999999999999999994
No 147
>KOG0533|consensus
Probab=92.99 E-value=0.2 Score=37.22 Aligned_cols=41 Identities=12% Similarity=0.184 Sum_probs=36.6
Q ss_pred eeCCCCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEee
Q psy11608 9 KKQSSASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGY 49 (99)
Q Consensus 9 k~~~~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~ 49 (99)
.+.++|.|.|=|.|...++|++|++.++|..+.++++++.-
T Consensus 118 ~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~ 158 (243)
T KOG0533|consen 118 DRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEI 158 (243)
T ss_pred CCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEE
Confidence 44568999999999999999999999999999999988754
No 148
>KOG0116|consensus
Probab=92.70 E-value=0.19 Score=40.05 Aligned_cols=43 Identities=21% Similarity=0.442 Sum_probs=33.3
Q ss_pred EEEeeC-CCCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEee
Q psy11608 6 VDIKKQ-SSASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGY 49 (99)
Q Consensus 6 v~ik~~-~~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~ 49 (99)
|.+|.. +.+..||||+|.+.++++.|+++= -..++++++.|.-
T Consensus 320 I~vr~~~~~~~~fgFV~f~~~~~~~~~i~As-p~~ig~~kl~Vee 363 (419)
T KOG0116|consen 320 IQVRSPGGKNPCFGFVEFENAAAVQNAIEAS-PLEIGGRKLNVEE 363 (419)
T ss_pred eEEeccCCCcCceEEEEEeecchhhhhhhcC-ccccCCeeEEEEe
Confidence 445552 344499999999999999999874 6788888888864
No 149
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=92.22 E-value=0.33 Score=33.52 Aligned_cols=33 Identities=21% Similarity=0.343 Sum_probs=28.9
Q ss_pred CeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEee
Q psy11608 16 AFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGY 49 (99)
Q Consensus 16 gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~ 49 (99)
+--.|+|.+-++|.+|+. |+|..++|+.++|.-
T Consensus 71 ~~mwVTF~dg~sALaals-~dg~~v~g~~l~i~L 103 (146)
T PF08952_consen 71 DTMWVTFRDGQSALAALS-LDGIQVNGRTLKIRL 103 (146)
T ss_dssp TCEEEEESSCHHHHHHHH-GCCSEETTEEEEEEE
T ss_pred CeEEEEECccHHHHHHHc-cCCcEECCEEEEEEe
Confidence 446899999999999996 899999999988863
No 150
>KOG4209|consensus
Probab=91.87 E-value=0.16 Score=37.28 Aligned_cols=43 Identities=19% Similarity=0.098 Sum_probs=36.5
Q ss_pred CCceEEEEcCCCCCCChHHHHhhhcCCCceeeeeEEEEcCCCCC
Q psy11608 53 LATTCVWVDGVAGKCGTGEHNRVNLGYGKSLATTCVWVDGVAGK 96 (99)
Q Consensus 53 ~~~~~lfVg~l~~~~s~~~L~~~F~~fG~i~~~~~v~~d~~~g~ 96 (99)
.....+||||+...++.+.++.+|+.+|.|..+ .+..|+.+|+
T Consensus 99 ~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~-ti~~d~~~~~ 141 (231)
T KOG4209|consen 99 VDAPSVWVGNVDFLVTLTKIELHFESCGGINRV-TVPKDKFRGH 141 (231)
T ss_pred cCCceEEEeccccccccchhhheeeccCCccce-eeeccccCCC
Confidence 446789999999999999999999999999544 5668888775
No 151
>KOG1457|consensus
Probab=91.65 E-value=0.16 Score=37.89 Aligned_cols=28 Identities=11% Similarity=0.153 Sum_probs=25.4
Q ss_pred ceEEEEcCCCCCCChHHHHhhhcCCCce
Q psy11608 55 TTCVWVDGVAGKCGTGEHNRVNLGYGKS 82 (99)
Q Consensus 55 ~~~lfVg~l~~~~s~~~L~~~F~~fG~i 82 (99)
.++|||.|||.++...+|..+|..|---
T Consensus 34 VRTLFVSGLP~DvKpREiynLFR~f~GY 61 (284)
T KOG1457|consen 34 VRTLFVSGLPNDVKPREIYNLFRRFHGY 61 (284)
T ss_pred cceeeeccCCcccCHHHHHHHhccCCCc
Confidence 5789999999999999999999999554
No 152
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=90.70 E-value=0.75 Score=27.61 Aligned_cols=41 Identities=20% Similarity=0.379 Sum_probs=24.9
Q ss_pred eEEEEEeeCCCCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEee
Q psy11608 3 MYFVDIKKQSSASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGY 49 (99)
Q Consensus 3 I~~v~ik~~~~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~ 49 (99)
|-+|+|.. .|+||+=... .|+.+++.|++..+.++++++..
T Consensus 33 IG~I~I~~-----~~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~ 73 (74)
T PF03880_consen 33 IGRIDIFD-----NFSFVEVPEE-VAEKVLEALNGKKIKGKKVRVER 73 (74)
T ss_dssp EEEEEE-S-----S-EEEEE-TT--HHHHHHHHTT--SSS----EEE
T ss_pred EEEEEEee-----eEEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEE
Confidence 55677775 7999986554 88899999999999999998864
No 153
>KOG4307|consensus
Probab=90.27 E-value=0.57 Score=39.90 Aligned_cols=44 Identities=18% Similarity=0.316 Sum_probs=37.6
Q ss_pred EEEEeeCC--CCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEe
Q psy11608 5 FVDIKKQS--SASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLG 48 (99)
Q Consensus 5 ~v~ik~~~--~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~ 48 (99)
+|.||+.. ...|=|-|.|++.++|.+|...++++.|+++.|++.
T Consensus 897 sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~ 942 (944)
T KOG4307|consen 897 SIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLR 942 (944)
T ss_pred ceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEE
Confidence 45566553 678899999999999999999999999999988764
No 154
>KOG4454|consensus
Probab=90.07 E-value=0.075 Score=39.39 Aligned_cols=31 Identities=6% Similarity=0.025 Sum_probs=28.6
Q ss_pred CceEEEEcCCCCCCChHHHHhhhcCCCceee
Q psy11608 54 ATTCVWVDGVAGKCGTGEHNRVNLGYGKSLA 84 (99)
Q Consensus 54 ~~~~lfVg~l~~~~s~~~L~~~F~~fG~i~~ 84 (99)
.+.+|||+|+.+.+||+.|.++|-+-|+|++
T Consensus 8 ~drtl~v~n~~~~v~eelL~ElfiqaGPV~k 38 (267)
T KOG4454|consen 8 MDRTLLVQNMYSGVSEELLSELFIQAGPVYK 38 (267)
T ss_pred hhhHHHHHhhhhhhhHHHHHHHhhccCceEE
Confidence 4678999999999999999999999999954
No 155
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=89.25 E-value=0.49 Score=37.24 Aligned_cols=37 Identities=24% Similarity=0.236 Sum_probs=28.9
Q ss_pred ceEEEEcCCCCCCChHH----H--HhhhcCCCceeeeeEEEEcCCC
Q psy11608 55 TTCVWVDGVAGKCGTGE----H--NRVNLGYGKSLATTCVWVDGVA 94 (99)
Q Consensus 55 ~~~lfVg~l~~~~s~~~----L--~~~F~~fG~i~~~~~v~~d~~~ 94 (99)
.+-+||-|||+.+.+++ | .++|.+||.|. .+++.+.+
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~---KIvvNkkt 156 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIK---KIVVNKKT 156 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhcccee---EEEecccc
Confidence 46699999999987776 3 57899999994 55577665
No 156
>KOG4208|consensus
Probab=89.04 E-value=0.63 Score=34.00 Aligned_cols=44 Identities=14% Similarity=0.082 Sum_probs=36.5
Q ss_pred ceEEEEcCCCCCCChHHHHhhhcCCCceeeeeEEEEcCCCCCCC
Q psy11608 55 TTCVWVDGVAGKCGTGEHNRVNLGYGKSLATTCVWVDGVAGKCG 98 (99)
Q Consensus 55 ~~~lfVg~l~~~~s~~~L~~~F~~fG~i~~~~~v~~d~~~g~~~ 98 (99)
..-+|++.+|.-.-+..+...|.+||..+....+.+.+.||+++
T Consensus 49 ~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSK 92 (214)
T KOG4208|consen 49 EGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSK 92 (214)
T ss_pred ccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcC
Confidence 46799999999999999999999994443445677999999875
No 157
>KOG1190|consensus
Probab=87.85 E-value=0.67 Score=37.19 Aligned_cols=33 Identities=15% Similarity=0.156 Sum_probs=30.1
Q ss_pred CCceEEEEcCCCCCCChHHHHhhhcCCCceeee
Q psy11608 53 LATTCVWVDGVAGKCGTGEHNRVNLGYGKSLAT 85 (99)
Q Consensus 53 ~~~~~lfVg~l~~~~s~~~L~~~F~~fG~i~~~ 85 (99)
.|++-|.+++||-+++|++|-+++.+||+|..+
T Consensus 26 ~pSkV~HlRnlp~e~tE~elI~Lg~pFG~vtn~ 58 (492)
T KOG1190|consen 26 EPSKVVHLRNLPWEVTEEELISLGLPFGKVTNL 58 (492)
T ss_pred CCcceeEeccCCccccHHHHHHhcccccceeee
Confidence 478899999999999999999999999999654
No 158
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=87.53 E-value=1.5 Score=31.15 Aligned_cols=39 Identities=18% Similarity=0.238 Sum_probs=30.1
Q ss_pred CCCeEEEEeCCHHHHHHHHHhhC--CeEeCCeEEEEeecCC
Q psy11608 14 ASAFAFVQYTDIASVVRAMRAMD--GEYVGHNRVNLGYGKS 52 (99)
Q Consensus 14 s~gfaFV~F~~~~~a~~Ai~~m~--G~~i~~~~i~v~~~k~ 52 (99)
|-+=.-|.|.+.++|.+|...++ +..+.++.+++.|++.
T Consensus 30 sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~ 70 (184)
T PF04847_consen 30 SFRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQP 70 (184)
T ss_dssp TTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----
T ss_pred CCCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccc
Confidence 45667899999999999999999 9999999999988753
No 159
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=87.05 E-value=1.5 Score=26.34 Aligned_cols=28 Identities=25% Similarity=0.436 Sum_probs=24.8
Q ss_pred EEEeCCHHHHHHHHHhhCCeEeCCeEEE
Q psy11608 19 FVQYTDIASVVRAMRAMDGEYVGHNRVN 46 (99)
Q Consensus 19 FV~F~~~~~a~~Ai~~m~G~~i~~~~i~ 46 (99)
||.|.|.++|++..+..||..+..-++.
T Consensus 37 YIvF~~~~Ea~rC~~~~~~~~~f~y~m~ 64 (66)
T PF11767_consen 37 YIVFNDSKEAERCFRAEDGTLFFTYRMQ 64 (66)
T ss_pred EEEECChHHHHHHHHhcCCCEEEEEEEE
Confidence 8999999999999999999988766653
No 160
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=86.97 E-value=2 Score=27.73 Aligned_cols=37 Identities=19% Similarity=0.288 Sum_probs=29.0
Q ss_pred CCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeE-EEEeec
Q psy11608 13 SASAFAFVQYTDIASVVRAMRAMDGEYVGHNR-VNLGYG 50 (99)
Q Consensus 13 ~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~-i~v~~~ 50 (99)
.....--|+|.++.+|++|+.+ ||..+++.- +-|.+.
T Consensus 52 ~~~NWi~I~Y~~~~~A~rAL~~-NG~i~~g~~mvGV~~~ 89 (100)
T PF05172_consen 52 SGGNWIHITYDNPLSAQRALQK-NGTIFSGSLMVGVKPC 89 (100)
T ss_dssp CCTTEEEEEESSHHHHHHHHTT-TTEEETTCEEEEEEE-
T ss_pred CCCCEEEEECCCHHHHHHHHHh-CCeEEcCcEEEEEEEc
Confidence 5677889999999999999985 999998743 334443
No 161
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=84.23 E-value=2.2 Score=31.87 Aligned_cols=56 Identities=14% Similarity=0.200 Sum_probs=34.0
Q ss_pred EEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecCCCCceEEEEcCCCCCCChHHHHhhhc
Q psy11608 18 AFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKSLATTCVWVDGVAGKCGTGEHNRVNL 77 (99)
Q Consensus 18 aFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k~~~~~~lfVg~l~~~~s~~~L~~~F~ 77 (99)
|||+|.+.++|+.|.+.+....- ++.++..+ |.|+.-+| .||.-+..+..+|..+.
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~~--~~~~v~~A-PeP~DI~W-~NL~~~~~~r~~R~~~~ 56 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKRP--NSWRVSPA-PEPDDIIW-ENLSISSKQRFLRRIIV 56 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCCC--CCceEeeC-CCcccccc-cccCCChHHHHHHHHHH
Confidence 79999999999999986554432 23344433 33333333 56655555555555543
No 162
>KOG0112|consensus
Probab=84.21 E-value=0.34 Score=41.95 Aligned_cols=31 Identities=16% Similarity=0.103 Sum_probs=28.5
Q ss_pred ceEEEEcCCCCCCChHHHHhhhcCCCceeee
Q psy11608 55 TTCVWVDGVAGKCGTGEHNRVNLGYGKSLAT 85 (99)
Q Consensus 55 ~~~lfVg~l~~~~s~~~L~~~F~~fG~i~~~ 85 (99)
+..||+|||+..+++.+|+..|+.||.|.++
T Consensus 372 trTLf~Gnl~~kl~eseiR~af~e~gkve~V 402 (975)
T KOG0112|consen 372 TRTLFLGNLDSKLTESEIRPAFDESGKVEEV 402 (975)
T ss_pred hhhhhhcCcccchhhhhhhhhhhhhcccccc
Confidence 6789999999999999999999999999543
No 163
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=83.08 E-value=2.5 Score=23.93 Aligned_cols=21 Identities=10% Similarity=0.420 Sum_probs=18.3
Q ss_pred CCCCCeEEEEeCCHHHHHHHH
Q psy11608 12 SSASAFAFVQYTDIASVVRAM 32 (99)
Q Consensus 12 ~~s~gfaFV~F~~~~~a~~Ai 32 (99)
+....+.+|+|.+..+|++|+
T Consensus 33 ~~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 33 PESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred CCCCcEEEEEECCHHHHHhhC
Confidence 356789999999999999985
No 164
>KOG4210|consensus
Probab=82.53 E-value=0.53 Score=35.59 Aligned_cols=48 Identities=15% Similarity=0.238 Sum_probs=40.9
Q ss_pred CCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecCCCCc--eEEEEc
Q psy11608 13 SASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKSLAT--TCVWVD 61 (99)
Q Consensus 13 ~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k~~~~--~~lfVg 61 (99)
.++|||||.|.+...+..|+.. +...++++++++.++++.+. ..+|+.
T Consensus 225 ~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (285)
T KOG4210|consen 225 DSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEEDEPRPKSDGGLFGN 274 (285)
T ss_pred chhhhhhhhhhhchhHHHHhhc-ccCcccCcccccccCCCCcccccccccc
Confidence 7899999999999999999988 89999999999999887654 344444
No 165
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=81.46 E-value=3.7 Score=28.68 Aligned_cols=44 Identities=18% Similarity=0.205 Sum_probs=33.7
Q ss_pred ceEEEEEeeCCCCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeec
Q psy11608 2 VMYFVDIKKQSSASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYG 50 (99)
Q Consensus 2 ~I~~v~ik~~~~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~ 50 (99)
||.+|... ++.-|-|.|.|..+|=.|+.++.. ...|..+.+.|-
T Consensus 116 pI~SVT~c----GrqsavVvF~d~~SAC~Av~Af~s-~~pgtm~qCsWq 159 (166)
T PF15023_consen 116 PIQSVTLC----GRQSAVVVFKDITSACKAVSAFQS-RAPGTMFQCSWQ 159 (166)
T ss_pred Ccceeeec----CCceEEEEehhhHHHHHHHHhhcC-CCCCceEEeecc
Confidence 56666665 467899999999999999999876 445556677664
No 166
>KOG1855|consensus
Probab=80.89 E-value=1.9 Score=34.75 Aligned_cols=33 Identities=6% Similarity=0.030 Sum_probs=30.4
Q ss_pred CCceEEEEcCCCCCCChHHHHhhhcCCCceeee
Q psy11608 53 LATTCVWVDGVAGKCGTGEHNRVNLGYGKSLAT 85 (99)
Q Consensus 53 ~~~~~lfVg~l~~~~s~~~L~~~F~~fG~i~~~ 85 (99)
.+++.|-+-|||.+-+.+.|.++|+.+|.|..+
T Consensus 229 l~srtivaenLP~Dh~~enl~kiFg~~G~IksI 261 (484)
T KOG1855|consen 229 LPSRTIVAENLPLDHSYENLSKIFGTVGSIKSI 261 (484)
T ss_pred cccceEEEecCCcchHHHHHHHHhhcccceeee
Confidence 478899999999999999999999999999665
No 167
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=80.87 E-value=1.7 Score=25.92 Aligned_cols=19 Identities=16% Similarity=0.277 Sum_probs=15.3
Q ss_pred HHHHhhhcCCCceeeeeEEEEc
Q psy11608 70 GEHNRVNLGYGKSLATTCVWVD 91 (99)
Q Consensus 70 ~~L~~~F~~fG~i~~~~~v~~d 91 (99)
++||+.||..|+| ..+.++
T Consensus 9 ~~iR~~fs~lG~I---~vLYvn 27 (62)
T PF15513_consen 9 AEIRQFFSQLGEI---AVLYVN 27 (62)
T ss_pred HHHHHHHHhcCcE---EEEEEc
Confidence 6899999999999 455554
No 168
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=80.83 E-value=6.9 Score=25.60 Aligned_cols=41 Identities=10% Similarity=0.275 Sum_probs=33.8
Q ss_pred ceEEEEEeeCCCCCCe-EEEEeCCHHHHHHHHHhhCCeEeCC
Q psy11608 2 VMYFVDIKKQSSASAF-AFVQYTDIASVVRAMRAMDGEYVGH 42 (99)
Q Consensus 2 ~I~~v~ik~~~~s~gf-aFV~F~~~~~a~~Ai~~m~G~~i~~ 42 (99)
.|+.+.|.||+..-.| +-++|.+.++|..=.++.||+.+..
T Consensus 40 ~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 40 DIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred cEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 3778889999865554 5889999999999999999997743
No 169
>KOG1995|consensus
Probab=78.27 E-value=1.6 Score=34.11 Aligned_cols=42 Identities=17% Similarity=0.200 Sum_probs=37.1
Q ss_pred CCCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecCCC
Q psy11608 12 SSASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKSL 53 (99)
Q Consensus 12 ~~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k~~ 53 (99)
..++|=|-|.|.|+..|..|+.-++++.+.++.|+|..+...
T Consensus 113 ~~~KGeatvS~~D~~~akaai~~~agkdf~gn~ikvs~a~~r 154 (351)
T KOG1995|consen 113 GAPKGEATVSYEDPPAAKAAIEWFAGKDFCGNTIKVSLAERR 154 (351)
T ss_pred cCcCCceeeeecChhhhhhhhhhhccccccCCCchhhhhhhc
Confidence 378999999999999999999999999999999988766533
No 170
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=78.08 E-value=2 Score=27.70 Aligned_cols=30 Identities=23% Similarity=0.184 Sum_probs=20.4
Q ss_pred ceEEEEcCCCCCCChHHHHhhhcCCCceeee
Q psy11608 55 TTCVWVDGVAGKCGTGEHNRVNLGYGKSLAT 85 (99)
Q Consensus 55 ~~~lfVg~l~~~~s~~~L~~~F~~fG~i~~~ 85 (99)
++.|-|=|.|+. ....+-++|++||+|++.
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~ 35 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFGTILEH 35 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS-EECE
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcceEEEe
Confidence 456778789998 666777899999999765
No 171
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=77.27 E-value=2.6 Score=27.13 Aligned_cols=29 Identities=14% Similarity=0.415 Sum_probs=17.5
Q ss_pred EEEEEeeCCCCCCeEEEEeCCHHHHHHHHHhh
Q psy11608 4 YFVDIKKQSSASAFAFVQYTDIASVVRAMRAM 35 (99)
Q Consensus 4 ~~v~ik~~~~s~gfaFV~F~~~~~a~~Ai~~m 35 (99)
.-|++.+ ...-|+|.|.++++|+.|++.+
T Consensus 29 ~yVD~~~---G~~~g~VRf~~~~~A~~a~~~~ 57 (105)
T PF08777_consen 29 AYVDFSR---GDTEGYVRFKTPEAAQKALEKL 57 (105)
T ss_dssp EEEE--T---T-SEEEEEESS---HHHHHHHH
T ss_pred ceEEecC---CCCEEEEEECCcchHHHHHHHH
Confidence 3344443 4457999999999999999865
No 172
>KOG1365|consensus
Probab=77.12 E-value=17 Score=29.23 Aligned_cols=71 Identities=14% Similarity=0.060 Sum_probs=46.9
Q ss_pred CCCCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecC-----------C------CC-ceE--EEEcCCCCCCChH
Q psy11608 11 QSSASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGK-----------S------LA-TTC--VWVDGVAGKCGTG 70 (99)
Q Consensus 11 ~~~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k-----------~------~~-~~~--lfVg~l~~~~s~~ 70 (99)
+++..|.|-|.|.|++.-+.|++. +-+.++.+.|-+-.+. + .+ .+. |-..|||-++++.
T Consensus 98 qgrRnge~lvrf~d~e~RdlalkR-hkhh~g~ryievYka~ge~f~~iagg~s~e~~~flsk~~qvivRmRGLPfdat~~ 176 (508)
T KOG1365|consen 98 QGRRNGEALVRFVDPEGRDLALKR-HKHHMGTRYIEVYKATGEEFLKIAGGTSNEAAPFLSKENQVIVRMRGLPFDATAL 176 (508)
T ss_pred hhccccceEEEecCchhhhhhhHh-hhhhccCCceeeeccCchhheEecCCccccCCCCCCcccceEEEecCCCCCcchH
Confidence 346678999999999998889874 2233344444442211 0 11 223 5558999999999
Q ss_pred HHHhhhcCCCce
Q psy11608 71 EHNRVNLGYGKS 82 (99)
Q Consensus 71 ~L~~~F~~fG~i 82 (99)
|+.+.|.+-.+|
T Consensus 177 dVv~FF~~~cpv 188 (508)
T KOG1365|consen 177 DVVEFFGPPCPV 188 (508)
T ss_pred HHHHhcCCCCcc
Confidence 999999754443
No 173
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=76.95 E-value=5.8 Score=25.44 Aligned_cols=38 Identities=16% Similarity=0.004 Sum_probs=28.6
Q ss_pred eEEEEcCCCCCCChHHHHhhhcCC--CceeeeeEEEEcCCC
Q psy11608 56 TCVWVDGVAGKCGTGEHNRVNLGY--GKSLATTCVWVDGVA 94 (99)
Q Consensus 56 ~~lfVg~l~~~~s~~~L~~~F~~f--G~i~~~~~v~~d~~~ 94 (99)
++|.|.|+|...|.++|.+.+... |.. +.-.+.+|..+
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~y-DF~YLPiDf~~ 41 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKY-DFFYLPIDFKN 41 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcc-eEEEeeeeccC
Confidence 579999999999999999888765 444 33455567654
No 174
>KOG0128|consensus
Probab=76.57 E-value=0.24 Score=42.49 Aligned_cols=69 Identities=10% Similarity=0.030 Sum_probs=54.5
Q ss_pred CeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecCCC---------C-----ceEEEEcCCCCCCChHHHHhhhcCCCc
Q psy11608 16 AFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKSL---------A-----TTCVWVDGVAGKCGTGEHNRVNLGYGK 81 (99)
Q Consensus 16 gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k~~---------~-----~~~lfVg~l~~~~s~~~L~~~F~~fG~ 81 (99)
.++++.+....+++.|.. +.|..++++...++-+.+. | ..++||.||++.+++++|...|+.||.
T Consensus 615 ~~~~~~~s~~~~~esat~-pa~~~~a~~~~av~~ad~~~~~~~~kvs~n~~R~~~~~fvsnl~~~~~~~dl~~~~~~~~~ 693 (881)
T KOG0128|consen 615 PQQQKVQSKHGSAESATV-PAGGALANRSAAVGLADAEEKEENFKVSPNEIRDLIKIFVSNLSPKMSEEDLSERFSPSGT 693 (881)
T ss_pred chhhhhhccccchhhccc-ccccccCCccccCCCCCchhhhhccCcCchHHHHHHHHHHhhcchhhcCchhhhhcCccch
Confidence 388999999999999886 5677777776666544321 1 246999999999999999999999998
Q ss_pred eeee
Q psy11608 82 SLAT 85 (99)
Q Consensus 82 i~~~ 85 (99)
+..+
T Consensus 694 ~e~v 697 (881)
T KOG0128|consen 694 IEVV 697 (881)
T ss_pred hhhH
Confidence 8543
No 175
>KOG2193|consensus
Probab=76.14 E-value=1.6 Score=35.39 Aligned_cols=24 Identities=4% Similarity=0.068 Sum_probs=21.9
Q ss_pred eEEEEcCCCCCCChHHHHhhhcCC
Q psy11608 56 TCVWVDGVAGKCGTGEHNRVNLGY 79 (99)
Q Consensus 56 ~~lfVg~l~~~~s~~~L~~~F~~f 79 (99)
++||+|||.+.++.+||+++|..-
T Consensus 2 nklyignL~p~~~psdl~svfg~a 25 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDA 25 (584)
T ss_pred CcccccccCCCCChHHHHHHhccc
Confidence 579999999999999999999764
No 176
>KOG4211|consensus
Probab=73.51 E-value=5.5 Score=32.58 Aligned_cols=27 Identities=7% Similarity=-0.005 Sum_probs=21.8
Q ss_pred eEEEEcCCCCCCChHHHHhhhcCCCce
Q psy11608 56 TCVWVDGVAGKCGTGEHNRVNLGYGKS 82 (99)
Q Consensus 56 ~~lfVg~l~~~~s~~~L~~~F~~fG~i 82 (99)
..+.-.+||...++.++...|+..=++
T Consensus 282 ~fv~MRGlpy~a~~~di~nfFspl~p~ 308 (510)
T KOG4211|consen 282 HFVHMRGLPYDATENDIANFFSPLNPY 308 (510)
T ss_pred ceeeecCCCccCCCcchhhhcCCCCce
Confidence 346668899999999999999887766
No 177
>KOG4676|consensus
Probab=67.83 E-value=3.7 Score=32.94 Aligned_cols=29 Identities=10% Similarity=0.074 Sum_probs=27.1
Q ss_pred EEEEcCCCCCCChHHHHhhhcCCCceeee
Q psy11608 57 CVWVDGVAGKCGTGEHNRVNLGYGKSLAT 85 (99)
Q Consensus 57 ~lfVg~l~~~~s~~~L~~~F~~fG~i~~~ 85 (99)
-|-|.||+|+++.++++.+|...|+|.++
T Consensus 9 vIqvanispsat~dqm~tlFg~lGkI~el 37 (479)
T KOG4676|consen 9 VIQVANISPSATKDQMQTLFGNLGKIPEL 37 (479)
T ss_pred eeeecccCchhhHHHHHHHHhhccccccc
Confidence 68899999999999999999999999765
No 178
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=67.25 E-value=2.9 Score=29.38 Aligned_cols=28 Identities=11% Similarity=-0.111 Sum_probs=21.0
Q ss_pred ceEEEEcCCCCCCChHHHHhhhcC-CCce
Q psy11608 55 TTCVWVDGVAGKCGTGEHNRVNLG-YGKS 82 (99)
Q Consensus 55 ~~~lfVg~l~~~~s~~~L~~~F~~-fG~i 82 (99)
..+|-|..|||+++++++.+..+. ++.-
T Consensus 7 ~~KvVIR~LPP~LteeeF~~~i~~~l~~~ 35 (176)
T PF03467_consen 7 GTKVVIRRLPPNLTEEEFWEQISPWLPDE 35 (176)
T ss_dssp --EEEEEEE-TTS-HHHHCCCCSS--SSE
T ss_pred CceEEEeCCCCCCCHHHHHHHhhhhcccc
Confidence 468999999999999999998888 6665
No 179
>KOG4307|consensus
Probab=66.69 E-value=7.1 Score=33.59 Aligned_cols=83 Identities=11% Similarity=-0.029 Sum_probs=58.3
Q ss_pred CceEEEEEeeCC--C-CCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEe------e----------------------
Q psy11608 1 MVMYFVDIKKQS--S-ASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLG------Y---------------------- 49 (99)
Q Consensus 1 ~~I~~v~ik~~~--~-s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~------~---------------------- 49 (99)
|.|-.++|+.+. . ..|-+.|.|...++++.|++. |....-.+.+.+. |
T Consensus 335 ~~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~r-n~~~~~~R~~q~~P~g~~~~~~a~~~~~~~~~~~~~~~hg~p 413 (944)
T KOG4307|consen 335 RNAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFTR-NPSDDVNRPFQTGPPGNLGRNGAPPFQAGVPPPVIQNNHGRP 413 (944)
T ss_pred ccccccchhhhhcCCCcCCceEEEecCcchHHHHHhc-CchhhhhcceeecCCCccccccCccccccCCCCcccccCCCC
Confidence 345567777774 3 378999999999999999874 2222223333331 0
Q ss_pred -----cC-----C-----CCceEEEEcCCCCCCChHHHHhhhcCCCceee
Q psy11608 50 -----GK-----S-----LATTCVWVDGVAGKCGTGEHNRVNLGYGKSLA 84 (99)
Q Consensus 50 -----~k-----~-----~~~~~lfVg~l~~~~s~~~L~~~F~~fG~i~~ 84 (99)
++ . .....|||-+||-.+++.++-++|+.--.|++
T Consensus 414 ~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved 463 (944)
T KOG4307|consen 414 IAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVED 463 (944)
T ss_pred CCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhhhhhhh
Confidence 00 0 01578999999999999999999999888865
No 180
>KOG2891|consensus
Probab=65.03 E-value=3.4 Score=31.99 Aligned_cols=37 Identities=11% Similarity=0.137 Sum_probs=27.4
Q ss_pred eEEEEcCCCCC------------CChHHHHhhhcCCCceeeeeEEEEcC
Q psy11608 56 TCVWVDGVAGK------------CGTGEHNRVNLGYGKSLATTCVWVDG 92 (99)
Q Consensus 56 ~~lfVg~l~~~------------~s~~~L~~~F~~fG~i~~~~~v~~d~ 92 (99)
.+||..+||-. .|++-|+..|+.||.|..+...++|+
T Consensus 150 dti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdp 198 (445)
T KOG2891|consen 150 DTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDP 198 (445)
T ss_pred CceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccch
Confidence 46777777642 47899999999999996655555554
No 181
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=64.86 E-value=7.2 Score=23.09 Aligned_cols=18 Identities=28% Similarity=0.396 Sum_probs=15.8
Q ss_pred EEEEeCCHHHHHHHHHhh
Q psy11608 18 AFVQYTDIASVVRAMRAM 35 (99)
Q Consensus 18 aFV~F~~~~~a~~Ai~~m 35 (99)
|=|.|.+.+.|.+|+.+|
T Consensus 45 cNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 45 CNVVFKDEETAARALVAL 62 (62)
T ss_pred EEEEECCHHHHHHHHHcC
Confidence 568999999999999865
No 182
>PF01071 GARS_A: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; InterPro: IPR020561 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the A-domain of the enzyme, and is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase.; PDB: 1GSO_A 3LP8_A 2IP4_A 1VKZ_A 2QK4_A 2XD4_A 2XCL_A 3MJF_A 2YRW_A 2YS6_A ....
Probab=64.52 E-value=12 Score=26.91 Aligned_cols=30 Identities=27% Similarity=0.272 Sum_probs=25.1
Q ss_pred EEEeeCCCCCCeEEEEeCCHHHHHHHHHhh
Q psy11608 6 VDIKKQSSASAFAFVQYTDIASVVRAMRAM 35 (99)
Q Consensus 6 v~ik~~~~s~gfaFV~F~~~~~a~~Ai~~m 35 (99)
++||.|+...|=|-+...+.++|.+|++.+
T Consensus 41 ~ViKadGla~GKGV~i~~~~~eA~~~l~~~ 70 (194)
T PF01071_consen 41 VVIKADGLAAGKGVVIADDREEALEALREI 70 (194)
T ss_dssp EEEEESSSCTTTSEEEESSHHHHHHHHHHH
T ss_pred eEEccCCCCCCCEEEEeCCHHHHHHHHHHh
Confidence 699999966666677779999999999875
No 183
>KOG2416|consensus
Probab=63.98 E-value=9.9 Score=32.06 Aligned_cols=37 Identities=8% Similarity=0.211 Sum_probs=30.2
Q ss_pred CCeEEEEeCCHHHHHHHHHhhCCeEeC---CeEEEEeecC
Q psy11608 15 SAFAFVQYTDIASVVRAMRAMDGEYVG---HNRVNLGYGK 51 (99)
Q Consensus 15 ~gfaFV~F~~~~~a~~Ai~~m~G~~i~---~~~i~v~~~k 51 (99)
+.-|||.|.+.++|..-+.+|+|.... ++.+.+.|+.
T Consensus 481 KShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~adf~~ 520 (718)
T KOG2416|consen 481 KSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIADFVR 520 (718)
T ss_pred hcceeEecccHHHHHHHHHHHhccccCCCCCceeEeeecc
Confidence 356999999999999999999998653 4677777753
No 184
>PF04026 SpoVG: SpoVG; InterPro: IPR007170 This is a stage V sporulation protein G. It is essential for sporulation and specific to stage V sporulation in Bacillus megaterium and Bacillus subtilis []. In B. subtilis, expression decreases after 30-60 minutes of cold shock [].; GO: 0030435 sporulation resulting in formation of a cellular spore; PDB: 2IA9_F 2I9X_B 2I9Z_A.
Probab=62.53 E-value=9.5 Score=23.81 Aligned_cols=24 Identities=38% Similarity=0.434 Sum_probs=18.7
Q ss_pred CceEEEEEeeCC---CCCCeEEEEeCC
Q psy11608 1 MVMYFVDIKKQS---SASAFAFVQYTD 24 (99)
Q Consensus 1 ~~I~~v~ik~~~---~s~gfaFV~F~~ 24 (99)
|.|++|.|..-. +-+|||=|+|.|
T Consensus 1 M~itdVri~~~~~~~~lka~asV~~dd 27 (84)
T PF04026_consen 1 MKITDVRIRKIEPEGKLKAFASVTFDD 27 (84)
T ss_dssp --EEEEEEEETTSSSSEEEEEEEEETT
T ss_pred CccEEEEEEEecCCCCEEEEEEEEECC
Confidence 889999999864 678899999976
No 185
>PHA02531 20 portal vertex protein; Provisional
Probab=61.23 E-value=8.8 Score=31.51 Aligned_cols=38 Identities=24% Similarity=0.225 Sum_probs=29.8
Q ss_pred CceEEE---EcCCCCCCChHHHHhhhcCCCceeeeeEEEEcCCCCC
Q psy11608 54 ATTCVW---VDGVAGKCGTGEHNRVNLGYGKSLATTCVWVDGVAGK 96 (99)
Q Consensus 54 ~~~~lf---Vg~l~~~~s~~~L~~~F~~fG~i~~~~~v~~d~~~g~ 96 (99)
|.+++| |||||..-.++.|++++.+|= ..++.|..||.
T Consensus 277 PERRvFYiDVGNlPk~KAeqYlr~vm~~yk-----NklvYDa~TGe 317 (514)
T PHA02531 277 PERRVFYIDVGNLPKRKAEEYLNNVMQRYK-----NRVVYDANTGK 317 (514)
T ss_pred ccceEEEEEcCCCChhhHHHHHHHHHHHhh-----hhEEEeCCCCe
Confidence 455644 599999999999999999995 34557777775
No 186
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=58.97 E-value=2.2 Score=28.14 Aligned_cols=72 Identities=11% Similarity=0.095 Sum_probs=49.6
Q ss_pred CCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecCCC--------CceEEEE--cCCCCC-CChHHHHhhhcCCCc
Q psy11608 13 SASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKSL--------ATTCVWV--DGVAGK-CGTGEHNRVNLGYGK 81 (99)
Q Consensus 13 ~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k~~--------~~~~lfV--g~l~~~-~s~~~L~~~F~~fG~ 81 (99)
-+.++..+.|.+.+++++++.. ....+.+..+.+...++. ....+|| -|||.. .+++-|+.+-+..|+
T Consensus 53 l~~~~fl~~F~~~~d~~~vl~~-~p~~~~~~~~~l~~W~~~~~~~~~~~~~~~vWVri~glP~~~~~~~~~~~i~~~iG~ 131 (153)
T PF14111_consen 53 LGDNLFLFQFESEEDRQRVLKG-GPWNFNGHFLILQRWSPDFNPSEVKFEHIPVWVRIYGLPLHLWSEEILKAIGSKIGE 131 (153)
T ss_pred eCCCeEEEEEEeccceeEEEec-ccccccccchhhhhhcccccccccceeccchhhhhccCCHHHhhhHHHHHHHHhcCC
Confidence 3678999999999999988873 223444444444322211 1234555 789987 589999999999999
Q ss_pred eeee
Q psy11608 82 SLAT 85 (99)
Q Consensus 82 i~~~ 85 (99)
++++
T Consensus 132 ~i~v 135 (153)
T PF14111_consen 132 PIEV 135 (153)
T ss_pred eEEE
Confidence 9653
No 187
>KOG2068|consensus
Probab=58.49 E-value=4 Score=31.72 Aligned_cols=34 Identities=15% Similarity=0.322 Sum_probs=30.5
Q ss_pred EEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecC
Q psy11608 18 AFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGK 51 (99)
Q Consensus 18 aFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k 51 (99)
++|+|...++|.+||...+|....++.++..++.
T Consensus 128 ~yITy~~~eda~rci~~v~g~~~dg~~lka~~gt 161 (327)
T KOG2068|consen 128 VYITYEEEEDADRCIDDVDGFVDDGRALKASLGT 161 (327)
T ss_pred ccccccchHhhhhHHHHhhhHHhhhhhhHHhhCC
Confidence 6999999999999999999999999888777664
No 188
>PF14112 DUF4284: Domain of unknown function (DUF4284)
Probab=57.16 E-value=12 Score=24.76 Aligned_cols=18 Identities=11% Similarity=0.318 Sum_probs=15.5
Q ss_pred EEEEcCCCCCCChHHHHhhhc
Q psy11608 57 CVWVDGVAGKCGTGEHNRVNL 77 (99)
Q Consensus 57 ~lfVg~l~~~~s~~~L~~~F~ 77 (99)
.||||+.+ |+++|+++|+
T Consensus 3 siWiG~f~---s~~el~~Y~e 20 (122)
T PF14112_consen 3 SIWIGNFK---SEDELEEYFE 20 (122)
T ss_pred EEEEecCC---CHHHHHHHhC
Confidence 69999885 8999999984
No 189
>KOG4849|consensus
Probab=56.01 E-value=20 Score=28.64 Aligned_cols=40 Identities=15% Similarity=0.268 Sum_probs=32.4
Q ss_pred CCCCCCeEEEEeCCHHHHHHHHHhhCCeEeCCe-EEEEeec
Q psy11608 11 QSSASAFAFVQYTDIASVVRAMRAMDGEYVGHN-RVNLGYG 50 (99)
Q Consensus 11 ~~~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~-~i~v~~~ 50 (99)
.++|+|||.|...+..+..+-|+-|.-+.|+|. ++...|.
T Consensus 120 NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~~N 160 (498)
T KOG4849|consen 120 NGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLSYN 160 (498)
T ss_pred CCcccceEEEEecchHHHHHHHHhcccceecCCCCeeeccc
Confidence 359999999999999999999998888888774 4444443
No 190
>KOG0804|consensus
Probab=55.80 E-value=19 Score=29.36 Aligned_cols=41 Identities=10% Similarity=0.242 Sum_probs=35.2
Q ss_pred ceEEEEEeeCCCCCCeE-EEEeCCHHHHHHHHHhhCCeEeCC
Q psy11608 2 VMYFVDIKKQSSASAFA-FVQYTDIASVVRAMRAMDGEYVGH 42 (99)
Q Consensus 2 ~I~~v~ik~~~~s~gfa-FV~F~~~~~a~~Ai~~m~G~~i~~ 42 (99)
.|.++.|.||+.+-.|- -|+|.+.++|..=.+++||+.+..
T Consensus 101 ~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 101 QISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred hhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 37889999998766664 899999999999999999997754
No 191
>KOG1995|consensus
Probab=54.73 E-value=8.1 Score=30.31 Aligned_cols=29 Identities=14% Similarity=0.163 Sum_probs=26.5
Q ss_pred ceEEEEcCCCCCCChHHHHhhhcCCCcee
Q psy11608 55 TTCVWVDGVAGKCGTGEHNRVNLGYGKSL 83 (99)
Q Consensus 55 ~~~lfVg~l~~~~s~~~L~~~F~~fG~i~ 83 (99)
..++||-+||.++++++|.+.|.+.|.|-
T Consensus 66 ~~ti~v~g~~d~~~~~~~~~~f~qcg~ik 94 (351)
T KOG1995|consen 66 NETIFVWGCPDSVCENDNADFFLQCGVIK 94 (351)
T ss_pred cccceeeccCccchHHHHHHHHhhcceec
Confidence 46799999999999999999999999883
No 192
>PF08206 OB_RNB: Ribonuclease B OB domain; InterPro: IPR013223 This domain includes the N-terminal OB domain found in ribonuclease B proteins in one or two copies.; PDB: 2ID0_D 2IX1_A 2IX0_A.
Probab=53.96 E-value=11 Score=21.52 Aligned_cols=12 Identities=33% Similarity=0.509 Sum_probs=9.1
Q ss_pred CCCCeEEEEeCC
Q psy11608 13 SASAFAFVQYTD 24 (99)
Q Consensus 13 ~s~gfaFV~F~~ 24 (99)
.++|||||.-.+
T Consensus 6 ~~~GfGFv~~~~ 17 (58)
T PF08206_consen 6 HPKGFGFVIPDD 17 (58)
T ss_dssp -SSS-EEEEECT
T ss_pred EcCCCEEEEECC
Confidence 478999999988
No 193
>PF10915 DUF2709: Protein of unknown function (DUF2709); InterPro: IPR024484 Members of this family appear restricted to Chlamydiales. Their function is unknown.
Probab=51.01 E-value=28 Score=25.55 Aligned_cols=42 Identities=12% Similarity=0.311 Sum_probs=30.3
Q ss_pred EeCCHHHHHHHHHhhCCeEeCCeEEEEeecCCC---CceEEEEcCC
Q psy11608 21 QYTDIASVVRAMRAMDGEYVGHNRVNLGYGKSL---ATTCVWVDGV 63 (99)
Q Consensus 21 ~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k~~---~~~~lfVg~l 63 (99)
.|.+.++|.+-+++ +|+...-..|++..+++. .+++|||.-.
T Consensus 48 I~qs~e~ai~~lE~-e~KlWreteI~I~~g~p~VNE~TkkIYICPF 92 (238)
T PF10915_consen 48 IFQSAEDAIRILEE-EGKLWRETEIKIQSGKPSVNEQTKKIYICPF 92 (238)
T ss_pred hccCHHHHHHHHHH-hcchheeeeEEEecCCcccccccceEEEcCC
Confidence 47777777777764 778777788999888753 4667777543
No 194
>PRK09937 stationary phase/starvation inducible regulatory protein CspD; Provisional
Probab=49.84 E-value=16 Score=22.16 Aligned_cols=18 Identities=22% Similarity=0.318 Sum_probs=12.4
Q ss_pred EEeeCCCCCCeEEEEeCC
Q psy11608 7 DIKKQSSASAFAFVQYTD 24 (99)
Q Consensus 7 ~ik~~~~s~gfaFV~F~~ 24 (99)
.||.=+..+|||||+=.+
T Consensus 5 ~Vkwfn~~KGfGFI~~~~ 22 (74)
T PRK09937 5 TVKWFNNAKGFGFICPEG 22 (74)
T ss_pred EEEEEeCCCCeEEEeeCC
Confidence 345545789999996544
No 195
>COG2828 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=49.24 E-value=21 Score=28.01 Aligned_cols=86 Identities=15% Similarity=0.241 Sum_probs=43.4
Q ss_pred EEEEeeCCCCCCeEEEEeCCHHHHHHHHHhhCCeEeC-CeEEEE---eecCCCCceEEEEcC-CCCCCChHHHHhhhcCC
Q psy11608 5 FVDIKKQSSASAFAFVQYTDIASVVRAMRAMDGEYVG-HNRVNL---GYGKSLATTCVWVDG-VAGKCGTGEHNRVNLGY 79 (99)
Q Consensus 5 ~v~ik~~~~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~-~~~i~v---~~~k~~~~~~lfVg~-l~~~~s~~~L~~~F~~f 79 (99)
-+.++|-+.||| .|..-.|......+...+==+.+| +.+..+ +=+.+..++..-|+- --++.+-+.| |
T Consensus 7 p~~~mRGGTSKG-vFF~~~dLP~~~~~RD~lLlrVmGSpdp~QIDGiGGg~s~TSKvaIi~~S~~pd~DVDYL------F 79 (378)
T COG2828 7 PCVYMRGGTSKG-VFFLASDLPEDAAERDKLLLRVMGSPDPYQIDGIGGGNSLTSKVAIISKSSRPDHDVDYL------F 79 (378)
T ss_pred ceEEeccccccc-ceeEhhhCCcchhhhhHHHHHHhCCCCcceecccCCCCcccceEEEEccccCCCCccceE------E
Confidence 467888899999 555555544444443332111111 111111 223333344444432 2233333333 6
Q ss_pred CceeeeeEEEEcCCCCCCCC
Q psy11608 80 GKSLATTCVWVDGVAGKCGT 99 (99)
Q Consensus 80 G~i~~~~~v~~d~~~g~~~~ 99 (99)
|+| .+..-.+|- +|+||.
T Consensus 80 gQV-~id~~~VD~-sgNCGN 97 (378)
T COG2828 80 GQV-SIDKPFVDW-SGNCGN 97 (378)
T ss_pred EEE-EeecccccC-CCCccc
Confidence 777 456777887 799983
No 196
>PRK09507 cspE cold shock protein CspE; Reviewed
Probab=48.91 E-value=16 Score=21.71 Aligned_cols=17 Identities=24% Similarity=0.435 Sum_probs=12.1
Q ss_pred EeeCCCCCCeEEEEeCC
Q psy11608 8 IKKQSSASAFAFVQYTD 24 (99)
Q Consensus 8 ik~~~~s~gfaFV~F~~ 24 (99)
||.=+..+|||||+=.+
T Consensus 8 Vk~f~~~kGyGFI~~~~ 24 (69)
T PRK09507 8 VKWFNESKGFGFITPED 24 (69)
T ss_pred EEEEeCCCCcEEEecCC
Confidence 44445679999998655
No 197
>PRK14998 cold shock-like protein CspD; Provisional
Probab=48.58 E-value=16 Score=22.02 Aligned_cols=17 Identities=24% Similarity=0.337 Sum_probs=12.0
Q ss_pred EeeCCCCCCeEEEEeCC
Q psy11608 8 IKKQSSASAFAFVQYTD 24 (99)
Q Consensus 8 ik~~~~s~gfaFV~F~~ 24 (99)
||.=+..+|||||.=.+
T Consensus 6 Vkwfn~~kGfGFI~~~~ 22 (73)
T PRK14998 6 VKWFNNAKGFGFICPEG 22 (73)
T ss_pred EEEEeCCCceEEEecCC
Confidence 44445789999997655
No 198
>PRK13259 regulatory protein SpoVG; Reviewed
Probab=47.73 E-value=25 Score=22.52 Aligned_cols=24 Identities=17% Similarity=0.267 Sum_probs=19.8
Q ss_pred CceEEEEEeeCC---CCCCeEEEEeCC
Q psy11608 1 MVMYFVDIKKQS---SASAFAFVQYTD 24 (99)
Q Consensus 1 ~~I~~v~ik~~~---~s~gfaFV~F~~ 24 (99)
|.|++|.|++-. +=+|||=|+|.+
T Consensus 1 M~ITdVri~~~~~~g~lka~asit~dd 27 (94)
T PRK13259 1 MEVTDVRLRKVNTEGRMKAIVSITFDN 27 (94)
T ss_pred CeEEEEEEEEeCCCCcEEEEEEEEECC
Confidence 789999999873 558899998875
No 199
>smart00738 NGN In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. In Spt5p, this domain may confer affinity for Spt4p.Spt4p
Probab=47.55 E-value=32 Score=21.15 Aligned_cols=23 Identities=26% Similarity=0.320 Sum_probs=18.6
Q ss_pred CeEEEEeCCHHHHHHHHHhhCCe
Q psy11608 16 AFAFVQYTDIASVVRAMRAMDGE 38 (99)
Q Consensus 16 gfaFV~F~~~~~a~~Ai~~m~G~ 38 (99)
||=||++.-.++.-.++..+.|.
T Consensus 60 GYvFv~~~~~~~~~~~i~~~~~v 82 (106)
T smart00738 60 GYIFVEADLEDEVWTAIRGTPGV 82 (106)
T ss_pred CEEEEEEEeCCcHHHHHhcCCCc
Confidence 99999998777777788777764
No 200
>PRK10943 cold shock-like protein CspC; Provisional
Probab=47.39 E-value=16 Score=21.59 Aligned_cols=17 Identities=24% Similarity=0.448 Sum_probs=12.2
Q ss_pred EeeCCCCCCeEEEEeCC
Q psy11608 8 IKKQSSASAFAFVQYTD 24 (99)
Q Consensus 8 ik~~~~s~gfaFV~F~~ 24 (99)
||.=+..+|||||+=.+
T Consensus 8 Vk~f~~~kGfGFI~~~~ 24 (69)
T PRK10943 8 VKWFNESKGFGFITPAD 24 (69)
T ss_pred EEEEeCCCCcEEEecCC
Confidence 44445789999998654
No 201
>PRK15464 cold shock-like protein CspH; Provisional
Probab=46.47 E-value=16 Score=21.87 Aligned_cols=18 Identities=22% Similarity=0.207 Sum_probs=13.2
Q ss_pred EEeeCCCCCCeEEEEeCC
Q psy11608 7 DIKKQSSASAFAFVQYTD 24 (99)
Q Consensus 7 ~ik~~~~s~gfaFV~F~~ 24 (99)
.||.=+..+|||||+=.+
T Consensus 8 ~Vk~fn~~KGfGFI~~~~ 25 (70)
T PRK15464 8 IVKTFDRKSGKGFIIPSD 25 (70)
T ss_pred EEEEEECCCCeEEEccCC
Confidence 455556789999997665
No 202
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=46.34 E-value=66 Score=19.56 Aligned_cols=31 Identities=16% Similarity=0.199 Sum_probs=24.9
Q ss_pred CCCCCCeEEEEeCCHHHHHHHHHhhCCeEeC
Q psy11608 11 QSSASAFAFVQYTDIASVVRAMRAMDGEYVG 41 (99)
Q Consensus 11 ~~~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~ 41 (99)
++.-+||=||+=.+.++..+|++.+.+....
T Consensus 40 ~~~lkGyIyVEA~~~~~V~~ai~gi~~i~~~ 70 (84)
T PF03439_consen 40 PDSLKGYIYVEAERESDVKEAIRGIRHIRGS 70 (84)
T ss_dssp -TTSTSEEEEEESSHHHHHHHHTT-TTEEEE
T ss_pred eCCCceEEEEEeCCHHHHHHHHhcccceeec
Confidence 3468999999999999999999988776443
No 203
>TIGR02381 cspD cold shock domain protein CspD. This model represents what appears to be a phylogenetically distinct clade, containing E. coli CspD and related proteobacterial proteins within the larger family of cold shock domain proteins described by pfam model pfam00313. The gene symbol cspD may have been used idependently for other subfamilies of cold shock domain proteins, such as for B. subtilis CspD. These proteins typically are shorter than 70 amino acids. In E. coli, CspD is a stress response protein induced in stationary phase. This homodimer binds single-stranded DNA and appears to inhibit DNA replication.
Probab=45.12 E-value=21 Score=21.01 Aligned_cols=17 Identities=24% Similarity=0.337 Sum_probs=12.6
Q ss_pred EeeCCCCCCeEEEEeCC
Q psy11608 8 IKKQSSASAFAFVQYTD 24 (99)
Q Consensus 8 ik~~~~s~gfaFV~F~~ 24 (99)
||-=+..+|||||.=.+
T Consensus 6 Vk~f~~~kGfGFI~~~~ 22 (68)
T TIGR02381 6 VKWFNNAKGFGFICPEG 22 (68)
T ss_pred EEEEeCCCCeEEEecCC
Confidence 44445789999998766
No 204
>PRK15463 cold shock-like protein CspF; Provisional
Probab=45.06 E-value=19 Score=21.48 Aligned_cols=18 Identities=17% Similarity=0.161 Sum_probs=13.0
Q ss_pred EEeeCCCCCCeEEEEeCC
Q psy11608 7 DIKKQSSASAFAFVQYTD 24 (99)
Q Consensus 7 ~ik~~~~s~gfaFV~F~~ 24 (99)
.||.=+..+|||||+=.+
T Consensus 8 ~Vk~fn~~kGfGFI~~~~ 25 (70)
T PRK15463 8 IVKTFDGKSGKGLITPSD 25 (70)
T ss_pred EEEEEeCCCceEEEecCC
Confidence 455555789999997655
No 205
>KOG1855|consensus
Probab=44.03 E-value=8.4 Score=31.20 Aligned_cols=37 Identities=19% Similarity=0.325 Sum_probs=29.7
Q ss_pred ceEEEEEeeCC----------------CCCCeEEEEeCCHHHHHHHHHhhCCe
Q psy11608 2 VMYFVDIKKQS----------------SASAFAFVQYTDIASVVRAMRAMDGE 38 (99)
Q Consensus 2 ~I~~v~ik~~~----------------~s~gfaFV~F~~~~~a~~Ai~~m~G~ 38 (99)
.|-.|.|.+++ +.+-+|+|+|...+.|++|.+.|+-.
T Consensus 257 ~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~e 309 (484)
T KOG1855|consen 257 SIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNPE 309 (484)
T ss_pred ceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhchh
Confidence 46778888872 24678999999999999999988644
No 206
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=42.99 E-value=58 Score=17.92 Aligned_cols=46 Identities=20% Similarity=0.123 Sum_probs=30.8
Q ss_pred HHHHHHHhhCCeEeCCeEEEEeecCCCCceEEEEcCCCCCCChHHHHhhhcCCC
Q psy11608 27 SVVRAMRAMDGEYVGHNRVNLGYGKSLATTCVWVDGVAGKCGTGEHNRVNLGYG 80 (99)
Q Consensus 27 ~a~~Ai~~m~G~~i~~~~i~v~~~k~~~~~~lfVg~l~~~~s~~~L~~~F~~fG 80 (99)
..++|+..++|. ..+.+++. ++++-|..-++.++.++|.+..++-|
T Consensus 15 ~v~~~l~~~~GV----~~v~vd~~----~~~v~v~~~~~~~~~~~i~~~i~~~G 60 (62)
T PF00403_consen 15 KVEKALSKLPGV----KSVKVDLE----TKTVTVTYDPDKTSIEKIIEAIEKAG 60 (62)
T ss_dssp HHHHHHHTSTTE----EEEEEETT----TTEEEEEESTTTSCHHHHHHHHHHTT
T ss_pred HHHHHHhcCCCC----cEEEEECC----CCEEEEEEecCCCCHHHHHHHHHHhC
Confidence 445677888876 34566644 46677765556688888888776655
No 207
>cd04458 CSP_CDS Cold-Shock Protein (CSP) contains an S1-like cold-shock domain (CSD) that is found in eukaryotes, prokaryotes, and archaea. CSP's include the major cold-shock proteins CspA and CspB in bacteria and the eukaryotic gene regulatory factor Y-box protein. CSP expression is up-regulated by an abrupt drop in growth temperature. CSP's are also expressed under normal condition at lower level. The function of cold-shock proteins is not fully understood. They preferentially bind poly-pyrimidine region of single-stranded RNA and DNA. CSP's are thought to bind mRNA and regulate ribosomal translation, mRNA degradation, and the rate of transcription termination. The human Y-box protein, which contains a CSD, regulates transcription and translation of genes that contain the Y-box sequence in their promoters. This specific ssDNA-binding properties of CSD are required for the binding of Y-box protein to the promoter's Y-box sequence, thereby regulating transcription.
Probab=42.84 E-value=24 Score=20.04 Aligned_cols=17 Identities=24% Similarity=0.413 Sum_probs=12.0
Q ss_pred EeeCCCCCCeEEEEeCC
Q psy11608 8 IKKQSSASAFAFVQYTD 24 (99)
Q Consensus 8 ik~~~~s~gfaFV~F~~ 24 (99)
||.=...+|||||.=.+
T Consensus 5 Vk~~~~~kGfGFI~~~~ 21 (65)
T cd04458 5 VKWFDDEKGFGFITPDD 21 (65)
T ss_pred EEEEECCCCeEEEecCC
Confidence 34434568999998766
No 208
>PF15407 Spo7_2_N: Sporulation protein family 7
Probab=42.07 E-value=11 Score=22.55 Aligned_cols=18 Identities=6% Similarity=0.050 Sum_probs=14.1
Q ss_pred CceEEEEcCCCCCCChHH
Q psy11608 54 ATTCVWVDGVAGKCGTGE 71 (99)
Q Consensus 54 ~~~~lfVg~l~~~~s~~~ 71 (99)
.++++|||++|..+-++.
T Consensus 26 tSr~vflG~IP~~W~~~~ 43 (67)
T PF15407_consen 26 TSRRVFLGPIPEIWLQDH 43 (67)
T ss_pred cCceEEECCCChHHHHcC
Confidence 368999999999875443
No 209
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=41.78 E-value=15 Score=19.50 Aligned_cols=17 Identities=6% Similarity=-0.136 Sum_probs=10.6
Q ss_pred CCCCChHHHHhhhcCCC
Q psy11608 64 AGKCGTGEHNRVNLGYG 80 (99)
Q Consensus 64 ~~~~s~~~L~~~F~~fG 80 (99)
-.+++++.|++.|.+-+
T Consensus 18 ~~Dtd~~~Lk~vF~~i~ 34 (36)
T PF11411_consen 18 TVDTDEDQLKEVFNRIK 34 (36)
T ss_dssp SS---HHHHHHHHHCS-
T ss_pred cccCCHHHHHHHHHHhc
Confidence 34678999999998754
No 210
>PRK10354 RNA chaperone/anti-terminator; Provisional
Probab=41.61 E-value=23 Score=20.92 Aligned_cols=17 Identities=24% Similarity=0.427 Sum_probs=11.7
Q ss_pred EeeCCCCCCeEEEEeCC
Q psy11608 8 IKKQSSASAFAFVQYTD 24 (99)
Q Consensus 8 ik~~~~s~gfaFV~F~~ 24 (99)
||.=+..+|||||.=.+
T Consensus 9 Vk~f~~~kGfGFI~~~~ 25 (70)
T PRK10354 9 VKWFNADKGFGFITPDD 25 (70)
T ss_pred EEEEeCCCCcEEEecCC
Confidence 44445679999998543
No 211
>COG2088 SpoVG Uncharacterized protein, involved in the regulation of septum location [Cell envelope biogenesis, outer membrane]
Probab=41.58 E-value=28 Score=22.22 Aligned_cols=25 Identities=24% Similarity=0.234 Sum_probs=19.6
Q ss_pred CceEEEEEeeCC---CCCCeEEEEeCCH
Q psy11608 1 MVMYFVDIKKQS---SASAFAFVQYTDI 25 (99)
Q Consensus 1 ~~I~~v~ik~~~---~s~gfaFV~F~~~ 25 (99)
|-|++|.|++-. +=+.|+=|+|.+.
T Consensus 1 m~iTdVRirkv~~dgrmkA~vsvT~D~e 28 (95)
T COG2088 1 MEITDVRIRKVDTDGRMKAYVSVTLDNE 28 (95)
T ss_pred CcceeEEEEEecCCCcEEEEEEEEecce
Confidence 789999999864 6677888888653
No 212
>PRK09890 cold shock protein CspG; Provisional
Probab=41.12 E-value=24 Score=20.97 Aligned_cols=17 Identities=24% Similarity=0.427 Sum_probs=11.8
Q ss_pred EeeCCCCCCeEEEEeCC
Q psy11608 8 IKKQSSASAFAFVQYTD 24 (99)
Q Consensus 8 ik~~~~s~gfaFV~F~~ 24 (99)
||.=+..+|||||+=.+
T Consensus 9 Vk~f~~~kGfGFI~~~~ 25 (70)
T PRK09890 9 VKWFNADKGFGFITPDD 25 (70)
T ss_pred EEEEECCCCcEEEecCC
Confidence 44434679999998654
No 213
>KOG2591|consensus
Probab=40.91 E-value=12 Score=31.45 Aligned_cols=27 Identities=4% Similarity=0.193 Sum_probs=19.7
Q ss_pred EEEeCCHHHHHHHHHhhCC--eEeCCeEE
Q psy11608 19 FVQYTDIASVVRAMRAMDG--EYVGHNRV 45 (99)
Q Consensus 19 FV~F~~~~~a~~Ai~~m~G--~~i~~~~i 45 (99)
||+|++..||+.|.+.|.- +.+-+|+|
T Consensus 216 yITfesd~DAQqAykylreevk~fqgKpI 244 (684)
T KOG2591|consen 216 YITFESDTDAQQAYKYLREEVKTFQGKPI 244 (684)
T ss_pred EEEeecchhHHHHHHHHHHHHHhhcCcch
Confidence 8999999999999876543 24445444
No 214
>PRK11425 PTS system N-acetylgalactosamine-specific transporter subunit IIB; Provisional
Probab=40.53 E-value=1.2e+02 Score=20.82 Aligned_cols=17 Identities=6% Similarity=0.059 Sum_probs=15.1
Q ss_pred eEEEEeCCHHHHHHHHH
Q psy11608 17 FAFVQYTDIASVVRAMR 33 (99)
Q Consensus 17 faFV~F~~~~~a~~Ai~ 33 (99)
--||-|.++++|.++++
T Consensus 78 ~v~il~k~~~d~~~l~~ 94 (157)
T PRK11425 78 KILLVCKTPADFLTLVK 94 (157)
T ss_pred eEEEEECCHHHHHHHHH
Confidence 37999999999999987
No 215
>PRK08559 nusG transcription antitermination protein NusG; Validated
Probab=39.97 E-value=67 Score=21.77 Aligned_cols=29 Identities=14% Similarity=0.231 Sum_probs=24.0
Q ss_pred eCCCCCCeEEEEeCCHHHHHHHHHhhCCe
Q psy11608 10 KQSSASAFAFVQYTDIASVVRAMRAMDGE 38 (99)
Q Consensus 10 ~~~~s~gfaFV~F~~~~~a~~Ai~~m~G~ 38 (99)
-+..-+||-||+....+++..+++.+.|.
T Consensus 41 vp~~fpGYVfVe~~~~~~~~~~i~~v~~v 69 (153)
T PRK08559 41 APPELKGYVLVEAESKGAVEEAIRGIPHV 69 (153)
T ss_pred ccCCCCcEEEEEEEChHHHHHHHhcCCCE
Confidence 44568999999999889999999877654
No 216
>PF00313 CSD: 'Cold-shock' DNA-binding domain; InterPro: IPR002059 When Escherichia coli is exposed to a temperature drop from 37 to 10 degrees centigrade, a 4-5 hour lag phase occurs, after which growth is resumed at a reduced rate []. During the lag phase, the expression of around 13 proteins, which contain specific DNA-binding regions [], is increased 2-10 fold. These so-called 'cold shock' proteins are thought to help the cell to survive in temperatures lower than optimum growth temperature, by contrast with heat shock proteins, which help the cell to survive in temperatures greater than the optimum, possibly by condensation of the chromosome and organisation of the prokaryotic nucleoid []. A conserved domain of about 70 amino acids has been found in prokaryotic and eukaryotic DNA-binding proteins [, , ]. This domain is known as the 'cold-shock domain' (CSD), part of which is highly similar [] to the RNP-1 RNA-binding motif.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1HZC_A 1I5F_A 1HZ9_B 1C9O_B 1HZB_B 1HZA_A 2HAX_B 2L15_A 2LSS_A 3I2Z_B ....
Probab=39.44 E-value=34 Score=19.45 Aligned_cols=17 Identities=18% Similarity=0.251 Sum_probs=12.1
Q ss_pred eeCCCCCCeEEEEeCCH
Q psy11608 9 KKQSSASAFAFVQYTDI 25 (99)
Q Consensus 9 k~~~~s~gfaFV~F~~~ 25 (99)
|.=...+|||||.-.+.
T Consensus 6 ~~~~~~kgyGFI~~~~~ 22 (66)
T PF00313_consen 6 KWFDDEKGYGFITSDDG 22 (66)
T ss_dssp EEEETTTTEEEEEETTS
T ss_pred EEEECCCCceEEEEccc
Confidence 33346789999998764
No 217
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=39.38 E-value=17 Score=28.07 Aligned_cols=32 Identities=9% Similarity=0.049 Sum_probs=28.4
Q ss_pred ceEEEEcCCCCCCChHHHHhhhcCCCceeeee
Q psy11608 55 TTCVWVDGVAGKCGTGEHNRVNLGYGKSLATT 86 (99)
Q Consensus 55 ~~~lfVg~l~~~~s~~~L~~~F~~fG~i~~~~ 86 (99)
++.|-.-|+..+++-..+-..|-+||+|+.++
T Consensus 15 TRSLLfeNv~~sidLh~Fl~~fv~~~pIESiY 46 (309)
T PF10567_consen 15 TRSLLFENVNNSIDLHSFLTKFVKFGPIESIY 46 (309)
T ss_pred eHHHHHhhccccccHHHHHHHhhccCceeEEE
Confidence 56688889999999999999999999998763
No 218
>PF05036 SPOR: Sporulation related domain; InterPro: IPR007730 This 70 residue domain is composed of two 35 residue repeats that are found in bacterial proteins involved in sporulation and cell division, such as FtsN, CwlM and RlpA. This repeat might be involved in binding peptidoglycan. FtsN is an essential cell division protein with a simple bitopic topology: a short N-terminal cytoplasmic segment fused to a large carboxy periplasmic domain through a single transmembrane domain. The repeats lie at the periplasmic C terminus, which has an RNP-like fold []. FtsN localises to the septum ring complex. The CwlM protein is a cell wall hydrolase, where the C-terminal region, including the repeats, determines substrate specificity []. RlpA is a rare lipoprotein A protein that may be important for cell division. Its N-terminal cysteine may be attached to thioglyceride and N-fatty acyl residues [].; PDB: 1X60_A 1UTA_A.
Probab=38.70 E-value=45 Score=18.76 Aligned_cols=56 Identities=11% Similarity=-0.011 Sum_probs=32.2
Q ss_pred EEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecCCCCceEEEEcCCCCCCChHHHHhhh
Q psy11608 19 FVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKSLATTCVWVDGVAGKCGTGEHNRVN 76 (99)
Q Consensus 19 FV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k~~~~~~lfVg~l~~~~s~~~L~~~F 76 (99)
.-.|.+.++|++.+..|...-......... +..+-.+|++|..+..-.-+.+.+..
T Consensus 9 v~s~~~~~~A~~~~~~l~~~g~~~~~~~~~--~~~~~yrV~~G~f~~~~~A~~~~~~l 64 (76)
T PF05036_consen 9 VGSFSSEENAERLLAKLKKKGPDAYVVQVS--KGGPWYRVRVGPFSSREEAEAALRKL 64 (76)
T ss_dssp EEEES-HHHHHHHHHHHHHHT-----EEEE--EETTCEEEEECCECTCCHHHHHHHHH
T ss_pred EEEcCCHHHHHHHHHHHHhcCCCcceEEEe--cCCceEEEEECCCCCHHHHHHHHHHH
Confidence 346899999999888876542211112222 23356899999887766544444443
No 219
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=38.63 E-value=73 Score=23.51 Aligned_cols=76 Identities=12% Similarity=0.168 Sum_probs=46.0
Q ss_pred eEEEEeCCHHHHHHHHHhhC-CeEe---CCeEEEEeecC-CCCceEEEEcCCCC-----------------CCChHHHHh
Q psy11608 17 FAFVQYTDIASVVRAMRAMD-GEYV---GHNRVNLGYGK-SLATTCVWVDGVAG-----------------KCGTGEHNR 74 (99)
Q Consensus 17 faFV~F~~~~~a~~Ai~~m~-G~~i---~~~~i~v~~~k-~~~~~~lfVg~l~~-----------------~~s~~~L~~ 74 (99)
-....+.|.++|.+++.+.. ++.+ |.+.+. .|.. ..+..++|+.=||. -.|.++=+.
T Consensus 110 ~~~~~v~~~~eA~~~l~~~~~~~iflttGsk~L~-~f~~~~~~~~r~~~RvLp~~~~~~g~~~~~iia~~GPfs~e~n~a 188 (249)
T PF02571_consen 110 DNWHYVDSYEEAAELLKELGGGRIFLTTGSKNLP-PFVPAPLPGERLFARVLPTPESALGFPPKNIIAMQGPFSKELNRA 188 (249)
T ss_pred CeEEEeCCHHHHHHHHhhcCCCCEEEeCchhhHH-HHhhcccCCCEEEEEECCCccccCCCChhhEEEEeCCCCHHHHHH
Confidence 34889999999999998876 4432 333321 1111 22234555554443 236667788
Q ss_pred hhcCCCceeeeeEEEEcCCCCCCC
Q psy11608 75 VNLGYGKSLATTCVWVDGVAGKCG 98 (99)
Q Consensus 75 ~F~~fG~i~~~~~v~~d~~~g~~~ 98 (99)
+|.+||- .+++-+.||+.|
T Consensus 189 l~~~~~i-----~~lVtK~SG~~g 207 (249)
T PF02571_consen 189 LFRQYGI-----DVLVTKESGGSG 207 (249)
T ss_pred HHHHcCC-----CEEEEcCCCchh
Confidence 8999972 344778888754
No 220
>PF12091 DUF3567: Protein of unknown function (DUF3567); InterPro: IPR021951 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 90 amino acids in length. This protein has a conserved EIVDK sequence motif.
Probab=38.18 E-value=20 Score=22.58 Aligned_cols=59 Identities=17% Similarity=0.245 Sum_probs=34.4
Q ss_pred CCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecCCCCceEEEEcCC-------------CCCCChHHHHhhhcCC
Q psy11608 13 SASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKSLATTCVWVDGV-------------AGKCGTGEHNRVNLGY 79 (99)
Q Consensus 13 ~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k~~~~~~lfVg~l-------------~~~~s~~~L~~~F~~f 79 (99)
+|..|+-|+|.-.++. .|+. ..|..|-.|+. .+-|||.|. ....|.+++.+..+.|
T Consensus 6 nSd~y~VV~~~~~~~~-~~l~-~gGyEIVDK~~---------~rEifi~G~~Ae~Fr~~V~~li~~~Pt~EevDdfL~~y 74 (85)
T PF12091_consen 6 NSDNYCVVEFPPDAGH-PALA-RGGYEIVDKNA---------RREIFIDGSWAEMFREDVQALIASEPTQEEVDDFLGGY 74 (85)
T ss_pred cCCceEEEEecCCCCc-cchh-cCCcEEeecCC---------CceEEeCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 5789999999322221 2332 23444433221 356888775 3456778888777777
Q ss_pred Cce
Q psy11608 80 GKS 82 (99)
Q Consensus 80 G~i 82 (99)
..+
T Consensus 75 ~~l 77 (85)
T PF12091_consen 75 DAL 77 (85)
T ss_pred HHH
Confidence 554
No 221
>cd00027 BRCT Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain. The BRCT domain is found within many DNA damage repair and cell cycle checkpoint proteins. The unique diversity of this domain superfamily allows BRCT modules to interact forming homo/hetero BRCT multimers, BRCT-non-BRCT interactions, and interactions within DNA strand breaks.
Probab=37.42 E-value=38 Score=18.02 Aligned_cols=26 Identities=12% Similarity=0.013 Sum_probs=21.4
Q ss_pred EEEEcCCCCCCChHHHHhhhcCCCce
Q psy11608 57 CVWVDGVAGKCGTGEHNRVNLGYGKS 82 (99)
Q Consensus 57 ~lfVg~l~~~~s~~~L~~~F~~fG~i 82 (99)
.+++.|.++..+.++|++....+|--
T Consensus 3 ~~~i~g~~~~~~~~~l~~~i~~~Gg~ 28 (72)
T cd00027 3 TFVITGDLPSEERDELKELIEKLGGK 28 (72)
T ss_pred EEEEEecCCCcCHHHHHHHHHHcCCE
Confidence 56777777688999999999999864
No 222
>TIGR00387 glcD glycolate oxidase, subunit GlcD. This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity.
Probab=37.10 E-value=76 Score=24.81 Aligned_cols=35 Identities=11% Similarity=0.149 Sum_probs=28.8
Q ss_pred ceEEEEEeeCC--CCCCeEEEEeCCHHHHHHHHHhhC
Q psy11608 2 VMYFVDIKKQS--SASAFAFVQYTDIASVVRAMRAMD 36 (99)
Q Consensus 2 ~I~~v~ik~~~--~s~gfaFV~F~~~~~a~~Ai~~m~ 36 (99)
+|+++.+|--+ ..+.+.++.|.+.++|.+|+.++.
T Consensus 162 iit~~~lkl~p~p~~~~~~~~~f~~~~~~~~~~~~~~ 198 (413)
T TIGR00387 162 IVTEATLKLLPKPENIVVALAFFDSIEKAMQAVYDII 198 (413)
T ss_pred EEEEEEEEeecCCCccEEEEEECCCHHHHHHHHHHHH
Confidence 68899999886 555677889999999999987654
No 223
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=36.55 E-value=1e+02 Score=25.72 Aligned_cols=42 Identities=12% Similarity=0.053 Sum_probs=37.1
Q ss_pred CCeEEEEeecCCCCceEEEEcCCCCCCChHHHHhhhcCCCce
Q psy11608 41 GHNRVNLGYGKSLATTCVWVDGVAGKCGTGEHNRVNLGYGKS 82 (99)
Q Consensus 41 ~~~~i~v~~~k~~~~~~lfVg~l~~~~s~~~L~~~F~~fG~i 82 (99)
.+++|.|.|..+-|+.-+.||.|=.++==|-|-++++..|-=
T Consensus 115 ~~~kV~iE~sSaNptkplHiGHlR~aiiGDsLaril~~~Gy~ 156 (577)
T COG0018 115 KGKKVVIEYSSANPTGPLHIGHLRNAIIGDSLARILEFLGYD 156 (577)
T ss_pred CCCEEEEEEeCCCCCCCcccchhhhhHHHHHHHHHHHHcCCC
Confidence 367899999999999999999998888889999999998843
No 224
>PF07879 PHB_acc_N: PHB/PHA accumulation regulator DNA-binding domain; InterPro: IPR012909 This domain is found at the N terminus of the polyhydroxyalkanoate (PHA) synthesis regulators. These regulators have been shown to directly bind DNA and PHA []. The invariant nature of this domain compared to the C-terminal IPR007897 from INTERPRO domain(s) suggests that it contains the DNA-binding function.
Probab=36.52 E-value=42 Score=20.04 Aligned_cols=38 Identities=11% Similarity=0.027 Sum_probs=30.3
Q ss_pred CceEEEEcCCCCCCChHHHHhhhcCCCceeeeeEEEEcCCCCC
Q psy11608 54 ATTCVWVDGVAGKCGTGEHNRVNLGYGKSLATTCVWVDGVAGK 96 (99)
Q Consensus 54 ~~~~lfVg~l~~~~s~~~L~~~F~~fG~i~~~~~v~~d~~~g~ 96 (99)
|+++||=-.-+..+|-++|.++-..=-++ .| +|..||.
T Consensus 7 ~NRRLYDT~~s~YiTL~di~~lV~~g~~~----~V-~D~ktge 44 (64)
T PF07879_consen 7 PNRRLYDTETSSYITLEDIAQLVREGEDF----KV-VDAKTGE 44 (64)
T ss_pred CCCccccCCCceeEeHHHHHHHHHCCCeE----EE-EECCCCc
Confidence 57889988889999999999988775544 34 8888885
No 225
>PRK09756 PTS system N-acetylgalactosamine-specific transporter subunit IIB; Provisional
Probab=35.54 E-value=1.5e+02 Score=20.39 Aligned_cols=17 Identities=12% Similarity=0.114 Sum_probs=14.9
Q ss_pred eEEEEeCCHHHHHHHHH
Q psy11608 17 FAFVQYTDIASVVRAMR 33 (99)
Q Consensus 17 faFV~F~~~~~a~~Ai~ 33 (99)
--||-|.++++|.++++
T Consensus 81 ~vlvl~~~~~da~~l~~ 97 (158)
T PRK09756 81 KIFLICRTPQTVRKLVE 97 (158)
T ss_pred eEEEEECCHHHHHHHHH
Confidence 36999999999999887
No 226
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=35.38 E-value=33 Score=18.31 Aligned_cols=18 Identities=17% Similarity=0.180 Sum_probs=14.8
Q ss_pred CCCCCCChHHHHhhhcCC
Q psy11608 62 GVAGKCGTGEHNRVNLGY 79 (99)
Q Consensus 62 ~l~~~~s~~~L~~~F~~f 79 (99)
||+++++.++|++.|.+-
T Consensus 7 gl~~~~~~~~ik~~y~~l 24 (55)
T cd06257 7 GVPPDASDEEIKKAYRKL 24 (55)
T ss_pred CCCCCCCHHHHHHHHHHH
Confidence 588999999999888643
No 227
>PF07230 Peptidase_S80: Bacteriophage T4-like capsid assembly protein (Gp20); InterPro: IPR010823 This family of proteins is essential for capsid assembly in the T4-like bacteriophages []. Gp20 forms a unique 12 subunit portal vertex through which DNA enters during packaging and exits during infection. The Gp20 vertex acts as an initiator for the assembly of the major capsid protein and the scaffolding proteins into a prolate icosahedron of precise dimensions. The regulation of portal protein gene expression is an important regulator of prohead assembly in bacteriophage T4 [].
Probab=35.24 E-value=34 Score=28.14 Aligned_cols=38 Identities=13% Similarity=0.135 Sum_probs=30.3
Q ss_pred CceEEE---EcCCCCCCChHHHHhhhcCCCceeeeeEEEEcCCCCC
Q psy11608 54 ATTCVW---VDGVAGKCGTGEHNRVNLGYGKSLATTCVWVDGVAGK 96 (99)
Q Consensus 54 ~~~~lf---Vg~l~~~~s~~~L~~~F~~fG~i~~~~~v~~d~~~g~ 96 (99)
|.+++| |||||..=.++.|++++.+|= ..++.|..||.
T Consensus 274 PeRRvFyIDvGnlpk~KAeqyl~~iM~k~k-----nklvYDa~TGe 314 (501)
T PF07230_consen 274 PERRVFYIDVGNLPKQKAEQYLRDIMNKYK-----NKLVYDASTGE 314 (501)
T ss_pred ccceEEEEECCCCChHhHHHHHHHHHHHhc-----ceeeecCCCCe
Confidence 567765 499999999999999999995 34557777775
No 228
>KOG2416|consensus
Probab=35.06 E-value=10 Score=31.95 Aligned_cols=42 Identities=14% Similarity=0.378 Sum_probs=35.8
Q ss_pred CceEEEEcCCCCCCChHHHHhhhcCCCceeeeeEEEEcCCCCCC
Q psy11608 54 ATTCVWVDGVAGKCGTGEHNRVNLGYGKSLATTCVWVDGVAGKC 97 (99)
Q Consensus 54 ~~~~lfVg~l~~~~s~~~L~~~F~~fG~i~~~~~v~~d~~~g~~ 97 (99)
+++-|+|.||-.-.|.-.|+.+..+-|.++ ...|+|+.--+|
T Consensus 443 ~SnvlhI~nLvRPFTlgQLkelL~rtgg~V--ee~WmDkIKShC 484 (718)
T KOG2416|consen 443 PSNVLHIDNLVRPFTLGQLKELLGRTGGNV--EEFWMDKIKSHC 484 (718)
T ss_pred ccceEeeecccccchHHHHHHHHhhccCch--HHHHHHHhhcce
Confidence 478899999999999999999999776664 344999988888
No 229
>PF06613 KorB_C: KorB C-terminal beta-barrel domain; InterPro: IPR010575 This domain is found in several KorB transcriptional repressor proteins. The korB gene is a major regulatory element in the replication and maintenance of broad host-range plasmid RK2. It negatively controls the replication gene trfA, the host-lethal determinants kilA and kilB, and the korA-korB operon []. This family is found in conjunction with IPR003115 from INTERPRO.; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent; PDB: 1IGQ_B 1IGU_A.
Probab=34.91 E-value=31 Score=20.36 Aligned_cols=18 Identities=22% Similarity=0.615 Sum_probs=12.5
Q ss_pred EEeeCCCCCCeEEEEeCC
Q psy11608 7 DIKKQSSASAFAFVQYTD 24 (99)
Q Consensus 7 ~ik~~~~s~gfaFV~F~~ 24 (99)
.+.|.|.+.|++.+.|+|
T Consensus 23 lLnrRps~~G~~WiKyED 40 (60)
T PF06613_consen 23 LLNRRPSSEGLAWIKYED 40 (60)
T ss_dssp -TTB--SSTTEEEEEETT
T ss_pred hhccCCCcCCeEEEEEcc
Confidence 344556789999999987
No 230
>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....
Probab=33.90 E-value=36 Score=19.02 Aligned_cols=17 Identities=12% Similarity=0.161 Sum_probs=14.6
Q ss_pred CCCCCCChHHHHhhhcC
Q psy11608 62 GVAGKCGTGEHNRVNLG 78 (99)
Q Consensus 62 ~l~~~~s~~~L~~~F~~ 78 (99)
||+++.+.++|++.|.+
T Consensus 7 gl~~~~~~~eik~~y~~ 23 (64)
T PF00226_consen 7 GLPPDASDEEIKKAYRR 23 (64)
T ss_dssp TSTTTSSHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHh
Confidence 68999999999998754
No 231
>KOG4410|consensus
Probab=33.79 E-value=56 Score=25.47 Aligned_cols=27 Identities=4% Similarity=-0.125 Sum_probs=24.0
Q ss_pred eEEEEcCCCCCCChHHHHhhhcCCCce
Q psy11608 56 TCVWVDGVAGKCGTGEHNRVNLGYGKS 82 (99)
Q Consensus 56 ~~lfVg~l~~~~s~~~L~~~F~~fG~i 82 (99)
+-||++|||.++.-.||++...+-|.+
T Consensus 331 ~di~~~nl~rd~rv~dlk~~lr~~~~~ 357 (396)
T KOG4410|consen 331 TDIKLTNLSRDIRVKDLKSELRKRECT 357 (396)
T ss_pred cceeeccCccccchHHHHHHHHhcCCC
Confidence 569999999999999999998887765
No 232
>PLN02805 D-lactate dehydrogenase [cytochrome]
Probab=33.71 E-value=79 Score=26.15 Aligned_cols=35 Identities=20% Similarity=0.204 Sum_probs=28.8
Q ss_pred ceEEEEEeeCC--CCCCeEEEEeCCHHHHHHHHHhhC
Q psy11608 2 VMYFVDIKKQS--SASAFAFVQYTDIASVVRAMRAMD 36 (99)
Q Consensus 2 ~I~~v~ik~~~--~s~gfaFV~F~~~~~a~~Ai~~m~ 36 (99)
+|+++.+|-.+ ..+..+.+.|.+.++|.+|+.++-
T Consensus 296 IIT~~tlrl~p~P~~~~~~~~~f~~~~~a~~av~~i~ 332 (555)
T PLN02805 296 VITEVTLRLQKIPQHSVVAMCNFPTIKDAADVAIATM 332 (555)
T ss_pred EEEEEEEEeecCCcceEEEEEEcCCHHHHHHHHHHHH
Confidence 68999998664 667788999999999999887743
No 233
>PF10384 Scm3: Centromere protein Scm3; InterPro: IPR018465 The centromere protein Scm3 is a non-histone component of centromeric chromatin that binds to CenH3-H4 histones, which are required for kinetochore assembly. Scm3 is required for Cse4 localisation and is required for its centromeric association [, ]. The histone H3 variant Cse4 replaces conventional histone H3 in centromeric chromatin and helps direct the assembly of the kinetochore. In addition, Scm3 has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for G2/M progression []. Scm3 is required to maintain kinetochore function throughout the cell cycle. Scm3 contains a nuclear export signal (NES). The N-terminal region of Scm3 is well conserved and functions as the CenH3-interacting domain, while the C-terminal region is variable in size and sometimes consists of DNA binding motifs [].; GO: 0005634 nucleus; PDB: 3R45_C 2YFV_C 2L5A_A.
Probab=33.68 E-value=11 Score=21.93 Aligned_cols=25 Identities=16% Similarity=0.183 Sum_probs=16.1
Q ss_pred HHHhhhcCCCce--eeeeEEEEcCCCCC
Q psy11608 71 EHNRVNLGYGKS--LATTCVWVDGVAGK 96 (99)
Q Consensus 71 ~L~~~F~~fG~i--~~~~~v~~d~~~g~ 96 (99)
-++++|++||.+ ...... +|-.||.
T Consensus 17 ~~e~I~~KY~~~d~~~~~De-IDL~Tge 43 (58)
T PF10384_consen 17 RWESIIEKYGQPDFEDQGDE-IDLETGE 43 (58)
T ss_dssp HHHHHHHHHCSG-TCCSSEB-CTTCCTT
T ss_pred HHHHHHHHhcCcccCCccce-eeccCCe
Confidence 467889999987 333233 6666663
No 234
>PF08156 NOP5NT: NOP5NT (NUC127) domain; InterPro: IPR012974 This N-terminal domain is found in RNA-binding proteins of the NOP5 family [].
Probab=33.63 E-value=29 Score=20.56 Aligned_cols=19 Identities=16% Similarity=0.291 Sum_probs=15.5
Q ss_pred eEEEEeCCHHHHHHHHHhh
Q psy11608 17 FAFVQYTDIASVVRAMRAM 35 (99)
Q Consensus 17 faFV~F~~~~~a~~Ai~~m 35 (99)
.+|..|.+.++|..++..+
T Consensus 46 ~aF~pF~s~~~ALe~~~ai 64 (67)
T PF08156_consen 46 KAFSPFKSAEEALENANAI 64 (67)
T ss_pred hhccCCCCHHHHHHHHHHh
Confidence 4799999999998887664
No 235
>KOG4849|consensus
Probab=33.61 E-value=22 Score=28.44 Aligned_cols=26 Identities=12% Similarity=0.130 Sum_probs=22.4
Q ss_pred eEEEEcCCCCCCChHHHHhhhcCCCc
Q psy11608 56 TCVWVDGVAGKCGTGEHNRVNLGYGK 81 (99)
Q Consensus 56 ~~lfVg~l~~~~s~~~L~~~F~~fG~ 81 (99)
..+|||||-=+++++||.+....-|-
T Consensus 81 ~~~YvGNL~W~TTD~DL~~A~~S~G~ 106 (498)
T KOG4849|consen 81 YCCYVGNLLWYTTDADLLKALQSTGL 106 (498)
T ss_pred EEEEecceeEEeccHHHHHHHHhhhH
Confidence 57999999999999999988877663
No 236
>KOG4426|consensus
Probab=33.07 E-value=30 Score=28.56 Aligned_cols=65 Identities=11% Similarity=0.123 Sum_probs=46.9
Q ss_pred CeEEEE-eCCHHHHHHHHHhh--CCe---EeCCeEEEEeecCCCCceEEEEcCCCCCCChHHHHhhhcCCC
Q psy11608 16 AFAFVQ-YTDIASVVRAMRAM--DGE---YVGHNRVNLGYGKSLATTCVWVDGVAGKCGTGEHNRVNLGYG 80 (99)
Q Consensus 16 gfaFV~-F~~~~~a~~Ai~~m--~G~---~i~~~~i~v~~~k~~~~~~lfVg~l~~~~s~~~L~~~F~~fG 80 (99)
|=|||. |-+.+=+.+++..| ||. .+..+++-|.|..|.=.+...||.|-+++=-+.|-++|+--|
T Consensus 155 gpGFiNv~Ls~d~~~~~i~nll~~GV~~P~l~~KrvlVDFSSPNIAKeMHVGHLRSTIIGdsl~RllE~~~ 225 (656)
T KOG4426|consen 155 GPGFINVFLSKDYMSKQISNLLVNGVKLPTLSVKRVLVDFSSPNIAKEMHVGHLRSTIIGDSLCRLLEFSG 225 (656)
T ss_pred CCceEEEEechHHHHHHHHHHHHcCCCCcccceeeEEEecCCCcHHHHhhhhhhhhhhHhHHHHHHHHhcC
Confidence 456765 55555566677664 776 445678888887665456788999999998899999887655
No 237
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=33.00 E-value=64 Score=22.53 Aligned_cols=27 Identities=11% Similarity=0.257 Sum_probs=22.5
Q ss_pred CCeEEEEeCCHHHHHHHHHhhCCeEeC
Q psy11608 15 SAFAFVQYTDIASVVRAMRAMDGEYVG 41 (99)
Q Consensus 15 ~gfaFV~F~~~~~a~~Ai~~m~G~~i~ 41 (99)
-.-|+|+|.+.+++..=...++|+.+-
T Consensus 55 ~SRaYi~F~~~~~~~~F~~~~~g~~F~ 81 (176)
T PF03467_consen 55 YSRAYINFKNPEDLLEFRDRFDGHVFV 81 (176)
T ss_dssp -EEEEEEESSCHHHHHHHHHCTTEEEE
T ss_pred ceEEEEEeCCHHHHHHHHHhcCCcEEE
Confidence 345899999999999999999998663
No 238
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=32.85 E-value=28 Score=22.39 Aligned_cols=26 Identities=4% Similarity=0.167 Sum_probs=18.3
Q ss_pred eEEEEcCCCCCCChHHHHhhhcCCCcee
Q psy11608 56 TCVWVDGVAGKCGTGEHNRVNLGYGKSL 83 (99)
Q Consensus 56 ~~lfVg~l~~~~s~~~L~~~F~~fG~i~ 83 (99)
..||+|++|...+.+.|++. .+..|+
T Consensus 6 ~~l~~G~~~~~~~~~~l~~~--gi~~Vi 31 (138)
T smart00195 6 PHLYLGSYSSALNLALLKKL--GITHVI 31 (138)
T ss_pred CCeEECChhHcCCHHHHHHc--CCCEEE
Confidence 36999999988777777664 444443
No 239
>COG5594 Uncharacterized integral membrane protein [Function unknown]
Probab=32.19 E-value=63 Score=28.26 Aligned_cols=36 Identities=17% Similarity=0.296 Sum_probs=25.5
Q ss_pred CCCCeEEEEeCCHHHHHHHHHhh-CCeEeCCeEEEEe
Q psy11608 13 SASAFAFVQYTDIASVVRAMRAM-DGEYVGHNRVNLG 48 (99)
Q Consensus 13 ~s~gfaFV~F~~~~~a~~Ai~~m-~G~~i~~~~i~v~ 48 (99)
.+.+.|||+|++..+|+.|-+.. ..+.++..++.++
T Consensus 355 t~~~~~FItFkSq~~Aq~~aQ~~~~sr~~~~~~v~ia 391 (827)
T COG5594 355 TPTKSGFITFKSQASAQIAAQSQIYSRVLGKLKVEIA 391 (827)
T ss_pred CccccEEEEEehhHHHHHHHHhhhhhhhhcceeeeec
Confidence 45579999999999999988764 4444454444444
No 240
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=32.13 E-value=69 Score=18.75 Aligned_cols=25 Identities=4% Similarity=0.280 Sum_probs=20.7
Q ss_pred CeEEEEeCCHHHHHHHHHhhCCeEe
Q psy11608 16 AFAFVQYTDIASVVRAMRAMDGEYV 40 (99)
Q Consensus 16 gfaFV~F~~~~~a~~Ai~~m~G~~i 40 (99)
.+.+|.|.+..+|.+|-+.+...-+
T Consensus 2 ~~~~i~F~st~~a~~~ek~lk~~gi 26 (73)
T PF11823_consen 2 KYYLITFPSTHDAMKAEKLLKKNGI 26 (73)
T ss_pred ceEEEEECCHHHHHHHHHHHHHCCC
Confidence 4789999999999999887765544
No 241
>KOG3397|consensus
Probab=31.88 E-value=22 Score=25.75 Aligned_cols=30 Identities=17% Similarity=0.122 Sum_probs=22.8
Q ss_pred eEEEEEeeCCCCCCeEEEEeCCHHHHHHHH
Q psy11608 3 MYFVDIKKQSSASAFAFVQYTDIASVVRAM 32 (99)
Q Consensus 3 I~~v~ik~~~~s~gfaFV~F~~~~~a~~Ai 32 (99)
|+.|+++++-+++|||=.-+...++-.++.
T Consensus 86 VEsVVV~k~~RG~GFGk~lMk~~E~~~R~~ 115 (225)
T KOG3397|consen 86 VESVVVKKDQRGLGFGKFLMKSTEKWMREK 115 (225)
T ss_pred EEEEEEehhhccccHHHHHHHHHHHHHHHh
Confidence 789999999999999855555556555554
No 242
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=31.85 E-value=92 Score=25.25 Aligned_cols=35 Identities=11% Similarity=0.119 Sum_probs=28.7
Q ss_pred ceEEEEEeeCCC--CCCeEEEEeCCHHHHHHHHHhhC
Q psy11608 2 VMYFVDIKKQSS--ASAFAFVQYTDIASVVRAMRAMD 36 (99)
Q Consensus 2 ~I~~v~ik~~~~--s~gfaFV~F~~~~~a~~Ai~~m~ 36 (99)
+|+++.+|-.+. .+...++.|.+.++|.+|+.++.
T Consensus 219 IIt~atlkl~p~p~~~~~~~~~f~~~~~a~~~~~~~~ 255 (499)
T PRK11230 219 VVTEVTVKLLPKPPVARVLLASFDSVEKAGLAVGDII 255 (499)
T ss_pred EEEEEEEEEEcCCcceEEEEEECCCHHHHHHHHHHHH
Confidence 688999998874 44566889999999999998864
No 243
>COG1278 CspC Cold shock proteins [Transcription]
Probab=31.74 E-value=32 Score=20.65 Aligned_cols=18 Identities=22% Similarity=0.335 Sum_probs=12.8
Q ss_pred EeeCCCCCCeEEEEeCCH
Q psy11608 8 IKKQSSASAFAFVQYTDI 25 (99)
Q Consensus 8 ik~~~~s~gfaFV~F~~~ 25 (99)
+|-=+..+|||||+=.+-
T Consensus 6 VKwfn~~KGfGFI~p~~G 23 (67)
T COG1278 6 VKWFNATKGFGFITPEDG 23 (67)
T ss_pred EEEeeCCCcceEcCCCCC
Confidence 444457889999877665
No 244
>smart00271 DnaJ DnaJ molecular chaperone homology domain.
Probab=31.61 E-value=42 Score=18.32 Aligned_cols=18 Identities=17% Similarity=0.184 Sum_probs=14.7
Q ss_pred CCCCCCChHHHHhhhcCC
Q psy11608 62 GVAGKCGTGEHNRVNLGY 79 (99)
Q Consensus 62 ~l~~~~s~~~L~~~F~~f 79 (99)
||+++++.++|++.|.+.
T Consensus 8 gl~~~~~~~~ik~ay~~l 25 (60)
T smart00271 8 GVPRDASLDEIKKAYRKL 25 (60)
T ss_pred CCCCCCCHHHHHHHHHHH
Confidence 588899999999887643
No 245
>PF00054 Laminin_G_1: Laminin G domain; InterPro: IPR012679 Laminins are large heterotrimeric glycoproteins involved in basement membrane function []. The laminin globular (G) domain can be found in one to several copies in various laminin family members, which includes a large number of extracellular proteins. The C terminus of laminin alpha chain contains a tandem repeat of five laminin G domains, which are critical for heparin-binding and cell attachment activity []. Laminin alpha4 is distributed in a variety of tissues including peripheral nerves, dorsal root ganglion, skeletal muscle and capillaries; in the neuromuscular junction, it is required for synaptic specialisation []. The structure of the laminin-G domain has been predicted to resemble that of pentraxin []. Laminin G domains can vary in their function, and a variety of binding functions has been ascribed to different LamG modules. For example, the laminin alpha1 and alpha2 chains each has five C-teminal laminin G domains, where only domains LG4 and LG5 contain binding sites for heparin, sulphatides and the cell surface receptor dystroglycan []. Laminin G-containing proteins appear to have a wide variety of roles in cell adhesion, signalling, migration, assembly and differentiation. This entry represents one subtype of laminin G domains, which is sometimes found in association with thrombospondin-type laminin G domains (IPR012680 from INTERPRO).; PDB: 1OKQ_A 1DYK_A 2C5D_A 1H30_A 1LHW_A 1KDK_A 1LHU_A 1KDM_A 1LHO_A 1D2S_A ....
Probab=31.45 E-value=23 Score=22.92 Aligned_cols=9 Identities=22% Similarity=0.515 Sum_probs=8.0
Q ss_pred eEEEEcCCC
Q psy11608 56 TCVWVDGVA 64 (99)
Q Consensus 56 ~~lfVg~l~ 64 (99)
..|||||+|
T Consensus 93 ~~lyvGG~p 101 (131)
T PF00054_consen 93 GPLYVGGLP 101 (131)
T ss_dssp SEEEESSSS
T ss_pred cCEEEccCC
Confidence 559999999
No 246
>TIGR00405 L26e_arch ribosomal protein L24p/L26e, archaeal. This protein contains a KOW domain, shared by bacterial NusG and the L24p/L26e family of ribosomal proteins. Although called archaeal NusG in several publications, it is the only close homolog of eukaryotic L26e in archaeal genomes, shares an operon with L11 in many genomes, and has been sequenced from purified ribosomes. It is here designated as a ribosomal protein for these reasons.
Probab=31.15 E-value=57 Score=21.61 Aligned_cols=31 Identities=10% Similarity=0.090 Sum_probs=24.5
Q ss_pred EeeCCCCCCeEEEEeCCHHHHHHHHHhhCCe
Q psy11608 8 IKKQSSASAFAFVQYTDIASVVRAMRAMDGE 38 (99)
Q Consensus 8 ik~~~~s~gfaFV~F~~~~~a~~Ai~~m~G~ 38 (99)
+..+..-+||=||+....++...++..+.|.
T Consensus 31 ~~vp~~fpGYvFV~~~~~~~~~~~i~~~~gv 61 (145)
T TIGR00405 31 ILAPESLKGYILVEAETKIDMRNPIIGVPHV 61 (145)
T ss_pred EEccCCCCcEEEEEEECcHHHHHHHhCCCCE
Confidence 3444478999999999888888888887764
No 247
>cd04485 DnaE_OBF DnaE_OBF: A subfamily of OB folds corresponding to the C-terminal OB-fold nucleic acid binding domain of Thermus aquaticus and Escherichia coli type C replicative DNA polymerase III alpha subunit (DnaE). The DNA polymerase holoenzyme of E. coli contains two copies of this replicative polymerase, each of which copies a different DNA strand. This group also contains Bacillus subtilis DnaE. Replication in B. subtilis and Staphylococcus aureus requires two different type C polymerases, polC and DnaE, both of which are thought to be included in the DNA polymerase holoenzyme. At the B. subtilis replication fork, polC appears to be involved in leading strand synthesis and DnaE in lagging strand synthesis.
Probab=30.88 E-value=84 Score=17.63 Aligned_cols=26 Identities=19% Similarity=0.322 Sum_probs=17.1
Q ss_pred eEEEEEeeCCCCCCeEEEEeCCHHHH
Q psy11608 3 MYFVDIKKQSSASAFAFVQYTDIASV 28 (99)
Q Consensus 3 I~~v~ik~~~~s~gfaFV~F~~~~~a 28 (99)
|.++..+...+++.|+++++.|....
T Consensus 6 v~~~~~~~~k~g~~~~~~~l~D~tg~ 31 (84)
T cd04485 6 VTSVRRRRTKKGKRMAFVTLEDLTGS 31 (84)
T ss_pred EEEeEEEEcCCCCEEEEEEEEeCCCe
Confidence 45555555445555899998886554
No 248
>TIGR03293 PhnG_redo phosphonate C-P lyase system protein PhnG. PhnH is a component of the C-P lyase system (GenProp0232) for the catabolism of phosphonate compounds. The specific function of this component is unknown. This model is based on Pfam model pfam06754.2, and has been broadened to include sequences missed by that model which are clearly true positive hits based on genome context.
Probab=30.73 E-value=1e+02 Score=20.98 Aligned_cols=30 Identities=10% Similarity=0.151 Sum_probs=25.3
Q ss_pred CceEEEEEeeCCCCCCeEEEEeCCHHHHHH
Q psy11608 1 MVMYFVDIKKQSSASAFAFVQYTDIASVVR 30 (99)
Q Consensus 1 ~~I~~v~ik~~~~s~gfaFV~F~~~~~a~~ 30 (99)
|+|+.+.|+-+....|||+|-=.|..-|+.
T Consensus 61 itVTr~~V~L~~g~~G~g~v~Gr~~~~A~~ 90 (144)
T TIGR03293 61 ITVTRAAVRLNDGTEGYAYVLGRDKRHAEL 90 (144)
T ss_pred EEEEEEEEEeCCCCeEEEEEecCCHHHHHH
Confidence 578999998665689999999999988875
No 249
>PF14893 PNMA: PNMA
Probab=30.14 E-value=36 Score=26.46 Aligned_cols=27 Identities=19% Similarity=0.311 Sum_probs=21.0
Q ss_pred eEEEEcCCCCCCChHHHHhh----hcCCCce
Q psy11608 56 TCVWVDGVAGKCGTGEHNRV----NLGYGKS 82 (99)
Q Consensus 56 ~~lfVg~l~~~~s~~~L~~~----F~~fG~i 82 (99)
+.|-|.|+|++++++++++. ++..|+-
T Consensus 19 r~lLv~giP~dc~~~ei~e~l~~~l~plg~y 49 (331)
T PF14893_consen 19 RALLVLGIPEDCEEAEIEEALQAALSPLGRY 49 (331)
T ss_pred hhheeecCCCCCCHHHHHHHHHHhhcccccc
Confidence 56999999999999887765 4455654
No 250
>PF06754 PhnG: Phosphonate metabolism protein PhnG; InterPro: IPR009609 This family consists of several bacterial phosphonate metabolism protein PhnG sequences. In Escherichia coli, the phn operon encodes proteins responsible for the uptake and breakdown of phosphonates. The exact function of PhnG is unknown, however it is thought likely that along with six other proteins PhnG makes up the the C-P (carbon-phosphorus) lyase [].; GO: 0015716 phosphonate transport, 0019634 phosphonate metabolic process
Probab=30.09 E-value=97 Score=21.12 Aligned_cols=30 Identities=7% Similarity=0.117 Sum_probs=26.5
Q ss_pred CceEEEEEeeCCCCCCeEEEEeCCHHHHHH
Q psy11608 1 MVMYFVDIKKQSSASAFAFVQYTDIASVVR 30 (99)
Q Consensus 1 ~~I~~v~ik~~~~s~gfaFV~F~~~~~a~~ 30 (99)
|+|+.+.|+-+....|||+|.=.|.+-|+.
T Consensus 62 v~VTr~~V~l~~g~~G~~~v~G~d~~~A~~ 91 (146)
T PF06754_consen 62 VTVTRCAVRLEDGTVGYGYVLGRDKRHAEL 91 (146)
T ss_pred EEEEEEEEEeCCCCEEEEEEcCCCHHHHHH
Confidence 578999999887779999999999999986
No 251
>PF13689 DUF4154: Domain of unknown function (DUF4154)
Probab=29.70 E-value=1.7e+02 Score=19.30 Aligned_cols=49 Identities=16% Similarity=0.253 Sum_probs=34.4
Q ss_pred CCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecCC----CCceEEEEcCCC
Q psy11608 15 SAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKS----LATTCVWVDGVA 64 (99)
Q Consensus 15 ~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k~----~~~~~lfVg~l~ 64 (99)
..+-+..+.+.. ...++..+.|+.++++++++.+-.. ..-+-|||+.-.
T Consensus 26 ~~~~icv~g~~~-~~~~L~~l~~~~~~~~~i~v~~~~~~~~~~~C~ilyi~~~~ 78 (145)
T PF13689_consen 26 SPFRICVLGDDP-FAEALSTLAGKQVGGRPIRVRRLSSPNEISGCHILYISSSE 78 (145)
T ss_pred CCeEEEEECChH-HHHHHHHhhhcccCCCcEEEEECCCCcccccccEEEECCCC
Confidence 345566666666 4468889999999999999875322 234569998764
No 252
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=29.12 E-value=1.4e+02 Score=23.16 Aligned_cols=35 Identities=11% Similarity=0.338 Sum_probs=29.2
Q ss_pred ceEEEEEeeCC-----CCCCeEEEEeCCHHHHHHHHHhhC
Q psy11608 2 VMYFVDIKKQS-----SASAFAFVQYTDIASVVRAMRAMD 36 (99)
Q Consensus 2 ~I~~v~ik~~~-----~s~gfaFV~F~~~~~a~~Ai~~m~ 36 (99)
++++|+|-... =++.||-++|-++.+|...+.-+.
T Consensus 173 VlEsIDlVna~~~~~~Fp~~YaILtFlnIsMAiEV~dYlk 212 (309)
T PF10567_consen 173 VLESIDLVNADEPSKHFPKNYAILTFLNISMAIEVLDYLK 212 (309)
T ss_pred EEEEEEEeccCcccccCCcceEEEeehhHHhHHHHHHHHH
Confidence 57888888765 377899999999999999887654
No 253
>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.
Probab=28.87 E-value=32 Score=21.88 Aligned_cols=19 Identities=0% Similarity=0.071 Sum_probs=15.4
Q ss_pred eEEEEcCCCCCCChHHHHh
Q psy11608 56 TCVWVDGVAGKCGTGEHNR 74 (99)
Q Consensus 56 ~~lfVg~l~~~~s~~~L~~ 74 (99)
..||||++|..-+.+.|++
T Consensus 7 ~~l~~g~~~~~~d~~~L~~ 25 (139)
T cd00127 7 PGLYLGSYPAASDKELLKK 25 (139)
T ss_pred CCeEECChhHhcCHHHHHH
Confidence 5799999998877777765
No 254
>KOG0862|consensus
Probab=27.49 E-value=32 Score=25.27 Aligned_cols=14 Identities=14% Similarity=0.669 Sum_probs=11.9
Q ss_pred CCCCCeEEEEeCCH
Q psy11608 12 SSASAFAFVQYTDI 25 (99)
Q Consensus 12 ~~s~gfaFV~F~~~ 25 (99)
+-+|.|+||+|.+.
T Consensus 106 ~~~RPY~FieFD~~ 119 (216)
T KOG0862|consen 106 PASRPYAFIEFDTF 119 (216)
T ss_pred ccCCCeeEEehhHH
Confidence 36899999999875
No 255
>smart00457 MACPF membrane-attack complex / perforin.
Probab=26.35 E-value=27 Score=24.32 Aligned_cols=23 Identities=17% Similarity=0.270 Sum_probs=20.5
Q ss_pred cCCCCCCChHHHHhhhcCCCcee
Q psy11608 61 DGVAGKCGTGEHNRVNLGYGKSL 83 (99)
Q Consensus 61 g~l~~~~s~~~L~~~F~~fG~i~ 83 (99)
..||...+.++..+.|+.||+-.
T Consensus 31 ~~Lp~~~~~~~~~~fi~~yGTH~ 53 (194)
T smart00457 31 RDLPDQYNRGAYARFIDKYGTHY 53 (194)
T ss_pred HhCccccCHHHHHHHHHHhCCeE
Confidence 47899999999999999999874
No 256
>TIGR02938 nifL_nitrog nitrogen fixation negative regulator NifL. NifL is a modulator of the nitrogen fixation positive regulator protein NifA, and is therefore a negative regulator. It binds NifA. NifA and NifL are encoded by adjacent genes.
Probab=26.29 E-value=2.1e+02 Score=21.53 Aligned_cols=39 Identities=5% Similarity=-0.120 Sum_probs=27.6
Q ss_pred EEEEeecCCCCceEEEEcCCCCCCChHHHHhhhcCCCce
Q psy11608 44 RVNLGYGKSLATTCVWVDGVAGKCGTGEHNRVNLGYGKS 82 (99)
Q Consensus 44 ~i~v~~~k~~~~~~lfVg~l~~~~s~~~L~~~F~~fG~i 82 (99)
.|.+........-.|-|.+=-..++++.+.++|++|-..
T Consensus 412 ~i~i~~~~~~~~~~~~V~D~G~Gi~~~~~~~iF~~f~~~ 450 (494)
T TIGR02938 412 ELSITTALNGDLIVVSILDSGPGIPQDLRYKVFEPFFTT 450 (494)
T ss_pred eEEEEEEecCCEEEEEEEeCCCCCCHHHHHHhcCCCccc
Confidence 355544333334568887777889999999999999544
No 257
>COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms]
Probab=25.95 E-value=2.1e+02 Score=24.27 Aligned_cols=50 Identities=12% Similarity=0.087 Sum_probs=36.0
Q ss_pred HHHHhhCCeEeCCeEEEEeecCCCCceEEEEcCCCCCCChHHHHhhhcCCCc
Q psy11608 30 RAMRAMDGEYVGHNRVNLGYGKSLATTCVWVDGVAGKCGTGEHNRVNLGYGK 81 (99)
Q Consensus 30 ~Ai~~m~G~~i~~~~i~v~~~k~~~~~~lfVg~l~~~~s~~~L~~~F~~fG~ 81 (99)
.|+.+|.|. ...+|.|.-.....--.|+|.+=-|.+.++-+..+|++|=+
T Consensus 508 NALDA~~~~--~~~~i~i~~~~~~~~v~l~VrDnGpGi~~e~~~~lFePF~T 557 (603)
T COG4191 508 NALDAMAGQ--EDRRLSIRAQREGGQVVLTVRDNGPGIAPEALPHLFEPFFT 557 (603)
T ss_pred HHHHHhcCC--CCCeeEEEEEecCCeEEEEEccCCCCCCHHHHHhhcCCccc
Confidence 466666663 34455555444444578999988999999999999999954
No 258
>PRK11006 phoR phosphate regulon sensor protein; Provisional
Probab=25.68 E-value=1.7e+02 Score=22.29 Aligned_cols=40 Identities=5% Similarity=0.043 Sum_probs=29.4
Q ss_pred eEEEEeecCCCCceEEEEcCCCCCCChHHHHhhhcCCCce
Q psy11608 43 NRVNLGYGKSLATTCVWVDGVAGKCGTGEHNRVNLGYGKS 82 (99)
Q Consensus 43 ~~i~v~~~k~~~~~~lfVg~l~~~~s~~~L~~~F~~fG~i 82 (99)
..|.+........-.|.|.+=-+.++++++.++|++|-+.
T Consensus 337 ~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~ 376 (430)
T PRK11006 337 THITVRWQRVPQGAEFSVEDNGPGIAPEHIPRLTERFYRV 376 (430)
T ss_pred CeEEEEEEEcCCEEEEEEEEcCCCCCHHHHHHhccCcccc
Confidence 3565554333334568888888889999999999999765
No 259
>PF05573 NosL: NosL; InterPro: IPR008719 NosL is one of the accessory proteins of the nos (nitrous oxide reductase) gene cluster. NosL is a monomeric protein of 18,540 MW that specifically and stoichiometrically binds Cu(I). The copper ion in NosL is ligated by a Cys residue, and one Met and one His are thought to serve as the other ligands. It is possible that NosL is a copper chaperone involved in metallocentre assembly []. This entry also contains HTH-type transcriptional repressors, including YcnK. YcnK may act as a negative transcriptional regulator of YcnJ in the presence of copper and may use copper as a corepressor. The gene, ycnK, is significantly induced under copper-limiting conditions.; PDB: 2HQ3_A 2HPU_A.
Probab=25.40 E-value=91 Score=20.97 Aligned_cols=28 Identities=4% Similarity=0.119 Sum_probs=19.6
Q ss_pred CCCCeEEEEeCCHHHHHHHHHhhCCeEe
Q psy11608 13 SASAFAFVQYTDIASVVRAMRAMDGEYV 40 (99)
Q Consensus 13 ~s~gfaFV~F~~~~~a~~Ai~~m~G~~i 40 (99)
.+-|...+-|.+.++|++-.++..|+.+
T Consensus 112 ~pMg~~~~aF~~~~~A~~F~~~~GG~v~ 139 (149)
T PF05573_consen 112 GPMGPDLIAFASKEDAEAFAKEHGGKVL 139 (149)
T ss_dssp -TTS--EEEES-HHHHHHHHHHTEEEEE
T ss_pred CCCCCcccccCCHHHHHHHHHHcCCEEe
Confidence 5678999999999999998887655544
No 260
>smart00703 NRF N-terminal domain in C. elegans NRF-6 (Nose Resistant to Fluoxetine-4) and NDG-4 (resistant to nordihydroguaiaretic acid-4). Also present in several other worm and fly proteins.
Probab=25.24 E-value=31 Score=21.99 Aligned_cols=26 Identities=8% Similarity=0.144 Sum_probs=20.8
Q ss_pred eEEEEcC-CCCCCChHHHHhhhcCCCc
Q psy11608 56 TCVWVDG-VAGKCGTGEHNRVNLGYGK 81 (99)
Q Consensus 56 ~~lfVg~-l~~~~s~~~L~~~F~~fG~ 81 (99)
..+.+|= +|.+++++|+++++.++..
T Consensus 70 ~~~~~gvC~P~sCs~~dv~~l~~~~~~ 96 (110)
T smart00703 70 LVLRTGVCLPSSCSAADLKTLLNQLSK 96 (110)
T ss_pred cceEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 3466665 7999999999999987754
No 261
>PF12631 GTPase_Cys_C: Catalytic cysteine-containing C-terminus of GTPase, MnmE; PDB: 1XZQ_A 1XZP_A 2GJ8_D 3GEH_A 3GEI_B 3GEE_A.
Probab=25.14 E-value=60 Score=19.15 Aligned_cols=15 Identities=0% Similarity=-0.048 Sum_probs=11.0
Q ss_pred CCCChHHHHhhhcCC
Q psy11608 65 GKCGTGEHNRVNLGY 79 (99)
Q Consensus 65 ~~~s~~~L~~~F~~f 79 (99)
...+++-|..+|++|
T Consensus 58 ~~~~ediLd~IFs~F 72 (73)
T PF12631_consen 58 EVVTEDILDNIFSNF 72 (73)
T ss_dssp SS--HHHHHHHHCTS
T ss_pred CCChHHHHHHHHHhh
Confidence 356788899999988
No 262
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=25.13 E-value=31 Score=21.50 Aligned_cols=24 Identities=13% Similarity=0.176 Sum_probs=19.6
Q ss_pred ceEEEEcCCCCCCChHHHHhhhcCCC
Q psy11608 55 TTCVWVDGVAGKCGTGEHNRVNLGYG 80 (99)
Q Consensus 55 ~~~lfVg~l~~~~s~~~L~~~F~~fG 80 (99)
.+.|.+.|||+.++++.|+= +-.|
T Consensus 23 ~~~i~~~~Lp~~~d~~Sl~V--~~~g 46 (104)
T PF13600_consen 23 ENEIIFEGLPPSLDPDSLRV--SGEG 46 (104)
T ss_pred ceEEEEeCCCcccCCCcEEE--EecC
Confidence 57899999999999999954 4455
No 263
>COG5584 Predicted small secreted protein [Function unknown]
Probab=24.72 E-value=42 Score=21.82 Aligned_cols=23 Identities=0% Similarity=-0.123 Sum_probs=18.7
Q ss_pred cCCCCCCChHHHHhhhcCCCcee
Q psy11608 61 DGVAGKCGTGEHNRVNLGYGKSL 83 (99)
Q Consensus 61 g~l~~~~s~~~L~~~F~~fG~i~ 83 (99)
.++++..--.-+++.|++||+|.
T Consensus 28 ~~is~e~alk~vk~afk~~mnI~ 50 (103)
T COG5584 28 KNISRENALKVVKEAFKQFMNIK 50 (103)
T ss_pred cccChhHHHHHHHHHhcccCCcc
Confidence 34667777788999999999995
No 264
>KOG3152|consensus
Probab=24.14 E-value=14 Score=27.95 Aligned_cols=27 Identities=11% Similarity=0.314 Sum_probs=24.5
Q ss_pred EEEEeCCHHHHHHHHHhhCCeEeCCeE
Q psy11608 18 AFVQYTDIASVVRAMRAMDGEYVGHNR 44 (99)
Q Consensus 18 aFV~F~~~~~a~~Ai~~m~G~~i~~~~ 44 (99)
|.|+|.+-..|.+.-..|||..|||++
T Consensus 131 GWvEF~~KrvAK~iAe~Lnn~~Iggkk 157 (278)
T KOG3152|consen 131 GWVEFISKRVAKRIAELLNNTPIGGKK 157 (278)
T ss_pred HHHHHHHHHHHHHHHHHhCCCccCCCC
Confidence 578999999999999999999999975
No 265
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=24.06 E-value=48 Score=17.13 Aligned_cols=19 Identities=5% Similarity=-0.022 Sum_probs=15.9
Q ss_pred CCCChHHHHhhhcCCCcee
Q psy11608 65 GKCGTGEHNRVNLGYGKSL 83 (99)
Q Consensus 65 ~~~s~~~L~~~F~~fG~i~ 83 (99)
.++|+++|++....+|-..
T Consensus 2 dtWs~~~L~~wL~~~gi~~ 20 (38)
T PF10281_consen 2 DTWSDSDLKSWLKSHGIPV 20 (38)
T ss_pred CCCCHHHHHHHHHHcCCCC
Confidence 3578999999999999763
No 266
>PF02518 HATPase_c: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; InterPro: IPR003594 This domain is found in several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases [], heat shock protein HSP90 [, , ], phytochrome-like ATPases and DNA mismatch repair proteins. The fold of this domain consists of two layers, alpha/beta, which contains an 8-stranded mixed beta-sheet. More information about this protein can be found at Protein of the Month: DNA Topoisomerase [].; GO: 0005524 ATP binding; PDB: 3JZ3_A 3DGE_A 2C2A_A 2BU5_A 2BU8_A 2BU6_A 2BU7_A 2BU2_A 2BTZ_A 3K99_D ....
Probab=23.93 E-value=1.6e+02 Score=17.76 Aligned_cols=40 Identities=5% Similarity=-0.003 Sum_probs=29.0
Q ss_pred eEEEEeecCCCCceEEEEcCCCCCCChHHHHhhhcCCCce
Q psy11608 43 NRVNLGYGKSLATTCVWVDGVAGKCGTGEHNRVNLGYGKS 82 (99)
Q Consensus 43 ~~i~v~~~k~~~~~~lfVg~l~~~~s~~~L~~~F~~fG~i 82 (99)
.+|.+........-.|-|.+--..+++++|+.+|.+|-.-
T Consensus 25 ~~I~i~~~~~~~~~~i~i~d~G~gi~~~~l~~~~~~~~~~ 64 (111)
T PF02518_consen 25 GKIDITIEEDDDHLSIEISDNGVGIPPEELEKLFEPFFTS 64 (111)
T ss_dssp SEEEEEEEEETTEEEEEEEESSSSTTHHHHHHHCSTTSHS
T ss_pred CEEEEEEEEecCeEEEEEEeccccccccccccchhhcccc
Confidence 3555554443345667778778889999999999988755
No 267
>COG1337 CRISPR system related protein, RAMP superfamily [Defense mechanisms]
Probab=23.86 E-value=47 Score=24.82 Aligned_cols=13 Identities=8% Similarity=0.148 Sum_probs=11.7
Q ss_pred CCCCeEEEEeCCH
Q psy11608 13 SASAFAFVQYTDI 25 (99)
Q Consensus 13 ~s~gfaFV~F~~~ 25 (99)
.|||||.|+|.+.
T Consensus 200 gSRGyG~Vkf~~~ 212 (249)
T COG1337 200 GSRGYGKVKFEIG 212 (249)
T ss_pred CCcceEEEEEEee
Confidence 7999999999874
No 268
>PF08266 Cadherin_2: Cadherin-like; InterPro: IPR013164 Cadherins are a family of adhesion molecules that mediate Ca2+-dependent cell-cell adhesion in all solid tissues of the organism which modulate a wide variety of processes including cell polarisation and migration [, ,]. Cadherin-mediated cell-cell junctions are formed as a result of interaction between extracellular domains of identical cadherins, which are located on the membranes of the neighbouring cells. The stability of these adhesive junctions is ensured by binding of the intracellular cadherin domain with the actin cytoskeleton. There are a number of different isoforms distributed in a tissue-specific manner in a wide variety of organisms. Cells containing different cadherins tend to segregate in vitro, while those that contain the same cadherins tend to preferentially aggregate together. This observation is linked to the finding that cadherin expression causes morphological changes involving the positional segregation of cells into layers, suggesting they may play an important role in the sorting of different cell types during morphogenesis, histogenesis and regeneration. They may also be involved in the regulation of tight and gap junctions, and in the control of intercellular spacing. Cadherins are evolutionary related to the desmogleins which are component of intercellular desmosome junctions involved in the interaction of plaque proteins. Structurally, cadherins comprise a number of domains: classically, these include a signal sequence; a propeptide of around 130 residues; a single transmembrane domain and five tandemly repeated extracellular cadherin domains, 4 of which are cadherin repeats, and the fifth contains 4 conserved cysteines and a N-terminal cytoplasmic domain []. However, proteins are designated as members of the broadly defined cadherin family if they have one or more cadherin repeats. A cadherin repeat is an independently folding sequence of approximately 110 amino acids that contains motifs with the conserved sequences DRE, DXNDNAPXF, and DXD. Crystal structures have revealed that multiple cadherin domains form Ca2+-dependent rod-like structures with a conserved Ca2+-binding pocket at the domain-domain interface. Cadherins depend on calcium for their function: calcium ions bind to specific residues in each cadherin repeat to ensure its proper folding, to confer rigidity upon the extracellular domain and is essential for cadherin adhesive function and for protection against protease digestion. This entry represents a cadherin domain that is usually found at the N terminus of cadherin proteins.; PDB: 1WUZ_A 1WYJ_A.
Probab=23.79 E-value=68 Score=19.74 Aligned_cols=39 Identities=10% Similarity=0.119 Sum_probs=17.4
Q ss_pred EEEEcCCCCCCChHHHHhhhcCCCcee--eeeEEEEcCCCC
Q psy11608 57 CVWVDGVAGKCGTGEHNRVNLGYGKSL--ATTCVWVDGVAG 95 (99)
Q Consensus 57 ~lfVg~l~~~~s~~~L~~~F~~fG~i~--~~~~v~~d~~~g 95 (99)
--+||||+.+..-+.-.-....|.-+. ....+.+|..+|
T Consensus 14 Gt~IGnia~dL~l~~~~l~~~~~ri~s~~~~~~~~v~~~tG 54 (84)
T PF08266_consen 14 GTVIGNIAKDLGLDPQSLSSRNFRIVSEGNSQYFRVNEKTG 54 (84)
T ss_dssp T-EEEECCCCCT--HHHHCCTTBEEE-SSSS-SEEE-TTTS
T ss_pred CCEEEEhHHhhCCCcccccccceEEeecCCcceeEecCCce
Confidence 368999988876443222233332221 123455666665
No 269
>PRK15053 dpiB sensor histidine kinase DpiB; Provisional
Probab=23.77 E-value=2e+02 Score=22.60 Aligned_cols=39 Identities=8% Similarity=-0.115 Sum_probs=27.0
Q ss_pred eEEEEeecCCCCceEEEEcCCCCCCChHHHHhhhcCCCc
Q psy11608 43 NRVNLGYGKSLATTCVWVDGVAGKCGTGEHNRVNLGYGK 81 (99)
Q Consensus 43 ~~i~v~~~k~~~~~~lfVg~l~~~~s~~~L~~~F~~fG~ 81 (99)
..|.+.-......-.|.|.+=.+.+++++++++|++|-.
T Consensus 456 ~~i~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~iF~~~~~ 494 (545)
T PRK15053 456 KIVELFLSDEGDDVVIEVADQGCGVPESLRDKIFEQGVS 494 (545)
T ss_pred ceEEEEEEECCCEEEEEEEeCCCCcCHHHHHHHhCCCCC
Confidence 445554333333456888877788999999999998754
No 270
>PF01823 MACPF: MAC/Perforin domain; InterPro: IPR020864 The membrane attack complex/perforin (MACPF) domain is conserved in bacteria, fungi, mammals and plants. It was originally identified and named as being common to five complement components (C6, C7, C8-alpha, C8-beta, and C9) and perforin. These molecules perform critical functions in innate and adaptive immunity. The MAC family proteins and perforin are known to participate in lytic pore formation. In response to pathogen infection, a sequential and highly specific interaction between the constituent elements occurs to form transmembrane channels which are known as the membrane-attack complex (MAC).Only a few other MACPF proteins have been characterised and several are thought to form pores for invasion or protection [, , ]. Examples are proteins from malarial parasites [], the cytolytic toxins from sea anemones [], and proteins that provide plant immunity [, ]. Functionally uncharacterised MACPF proteins are also evident in pathogenic bacteria such as Chlamydia spp [] and Photorhabdus luminescens (Xenorhabdus luminescens) []. The MACPF domain is commonly found to be associated with other N- and C-terminal domains, such as TSP1 (see PDOC50092 from PROSITEDOC), LDLRA (see PDOC00929 from PROSITEDOC), EGF-like (see PDOC00021 from PROSITEDOC),Sushi/CCP/SCR (see PDOC50923 from PROSITEDOC), FIMAC or C2 (see PDOC00380 from PROSITEDOC). They probably control or target MACPF function [, ]. The MACPF domain oligomerizes, undergoes conformational change, and is required for lytic activity. The MACPF domain consists of a central kinked four-stranded antiparallel beta sheet surrounded by alpha helices and beta strands, forming two structural segments. Overall, the MACPF domain has a thin L-shaped appearance. MACPF domains exhibit limited sequence similarity but contain a signature [YW]-G-[TS]-H-[FY]-x(6)-G-G motif [, , ]. Some proteins known to contain a MACPF domain are listed below: Vertebrate complement proteins C6 to C9. Complement factors C6 to C9 assemble to form a scaffold, the membrane attack complex (MAC), that permits C9 polymerisation into pores that lyse Gram-negative pathogens [, ]. Vertebrate perforin. It is delivered by natural killer cells and cytotoxic T lymphocytes and forms oligomeric pores (12 to 18 monomers) in the plasma membrane of either virus-infected or transformed cells. Arabidopsis thaliana (Mouse-ear cress) constitutively activated cell death 1 (CAD1) protein. It is likely to act as a mediator that recognises plant signals for pathogen infection []. Arabidopsis thaliana (Mouse-ear cress) necrotic spotted lesions 1 (NSL1) protein []. Venomous sea anemone Phyllodiscus semoni (Night anemone) toxins PsTX-60A and PsTX-60B []. Venomous sea anemone Actineria villosa (Okinawan sea anemone) toxin AvTX-60A []. Plasmodium sporozoite microneme protein essential for cell traversal 2 (SPECT2). It is essential for the membrane-wounding activity of the sporozoite and is involved in its traversal of the sinusoidal cell layer prior to hepatocyte-infection []. P. luminescens Plu-MACPF. Although nonlytic, it was shown to bind to cell membranes []. Chlamydial putative uncharacterised protein CT153 []. ; PDB: 2QP2_A 3OJY_B 3NSJ_A 4E0S_B 3T5O_A 4A5W_B 2QQH_A 2RD7_A.
Probab=23.48 E-value=31 Score=23.60 Aligned_cols=25 Identities=12% Similarity=0.243 Sum_probs=18.6
Q ss_pred EcCCCCCCChHH---HHhhhcCCCceee
Q psy11608 60 VDGVAGKCGTGE---HNRVNLGYGKSLA 84 (99)
Q Consensus 60 Vg~l~~~~s~~~---L~~~F~~fG~i~~ 84 (99)
+..||...+.++ ..+.|..||+..-
T Consensus 53 l~~L~~~~~~~~~~~y~~f~~~yGTH~v 80 (212)
T PF01823_consen 53 LNALPAEYNSDNTDEYYRFFDKYGTHYV 80 (212)
T ss_dssp HHTSHSS--HHHHHHHHHHHHHH-SEEE
T ss_pred HHhhCcccCccchHHHHHHHHHhCcEEE
Confidence 678999998888 8889999998853
No 271
>PF02210 Laminin_G_2: Laminin G domain; InterPro: IPR012680 Laminins are large heterotrimeric glycoproteins involved in basement membrane function []. The laminin globular (G) domain can be found in one to several copies in various laminin family members, including a large number of extracellular proteins. The C terminus of the laminin alpha chain contains a tandem repeat of five laminin G domains, which are critical for heparin-binding and cell attachment activity []. Laminin alpha4 is distributed in a variety of tissues including peripheral nerves, dorsal root ganglion, skeletal muscle and capillaries; in the neuromuscular junction, it is required for synaptic specialisation []. The structure of the laminin-G domain has been predicted to resemble that of pentraxin []. Laminin G domains can vary in their function, and a variety of binding functions have been ascribed to different LamG modules. For example, the laminin alpha1 and alpha2 chains each have five C-teminal laminin G domains, where only domains LG4 and LG5 contain binding sites for heparin, sulphatides and the cell surface receptor dystroglycan []. Laminin G-containing proteins appear to have a wide variety of roles in cell adhesion, signalling, migration, assembly and differentiation. This entry represents one subtype of laminin G domains, which is sometimes found in association with thrombospondin-type laminin G domains (IPR012679 from INTERPRO).; PDB: 3POY_A 3QCW_B 3R05_B 3ASI_A 3MW4_B 3MW3_A 1QU0_D 1DYK_A 1OKQ_A 3SH4_A ....
Probab=23.21 E-value=58 Score=19.87 Aligned_cols=28 Identities=7% Similarity=0.011 Sum_probs=18.4
Q ss_pred ceEEEEcCCCCCCChHHHHhhhcCCCce
Q psy11608 55 TTCVWVDGVAGKCGTGEHNRVNLGYGKS 82 (99)
Q Consensus 55 ~~~lfVg~l~~~~s~~~L~~~F~~fG~i 82 (99)
...||+|++|+......+...-.--|.|
T Consensus 93 ~~~l~iGg~~~~~~~~~~~~~~~f~Gci 120 (128)
T PF02210_consen 93 DGSLYIGGLPESNQPSGSVDTPGFVGCI 120 (128)
T ss_dssp EEEEEESSTTTTCTCTTSSTTSB-EEEE
T ss_pred CCCEEEecccCccccccccCCCCcEEEc
Confidence 4669999999987666555522223666
No 272
>KOG3432|consensus
Probab=22.23 E-value=68 Score=21.37 Aligned_cols=34 Identities=12% Similarity=0.085 Sum_probs=24.5
Q ss_pred eEEEEcCCCCCCChHHHHhhhcCCCceeeeeEEEEc
Q psy11608 56 TCVWVDGVAGKCGTGEHNRVNLGYGKSLATTCVWVD 91 (99)
Q Consensus 56 ~~lfVg~l~~~~s~~~L~~~F~~fG~i~~~~~v~~d 91 (99)
.+.+| +.+.++.++|++.|..|-.=.++..+++.
T Consensus 36 ~Nf~v--v~~~Tt~~eiedaF~~f~~RdDIaIiLIn 69 (121)
T KOG3432|consen 36 PNFLV--VDSKTTVEEIEDAFKSFTARDDIAIILIN 69 (121)
T ss_pred CCEEE--EeccCCHHHHHHHHHhhccccCeEEEEEh
Confidence 44555 23589999999999999876555666553
No 273
>COG0001 HemL Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism]
Probab=22.00 E-value=1.1e+02 Score=24.80 Aligned_cols=28 Identities=29% Similarity=0.359 Sum_probs=24.5
Q ss_pred ChHHHHhhhcCCC-ceeeeeEEEEcCCCCCCC
Q psy11608 68 GTGEHNRVNLGYG-KSLATTCVWVDGVAGKCG 98 (99)
Q Consensus 68 s~~~L~~~F~~fG-~i~~~~~v~~d~~~g~~~ 98 (99)
+.+.|++.|++|| +| ..|++++.-|++|
T Consensus 186 D~~al~~~~~~~g~~I---AaVIvEPv~gn~g 214 (432)
T COG0001 186 DLEALEEAFEEYGDDI---AAVIVEPVAGNMG 214 (432)
T ss_pred CHHHHHHHHHHcCCcE---EEEEeccccCCCC
Confidence 7899999999997 44 7888999999876
No 274
>COG3194 DAL3 Ureidoglycolate hydrolase [Nucleotide transport and metabolism]
Probab=21.68 E-value=42 Score=23.72 Aligned_cols=15 Identities=13% Similarity=0.213 Sum_probs=12.1
Q ss_pred HhhhcCCCceeeeeE
Q psy11608 73 NRVNLGYGKSLATTC 87 (99)
Q Consensus 73 ~~~F~~fG~i~~~~~ 87 (99)
++.|..||.|+++..
T Consensus 11 ~EaFapfGdVIe~~~ 25 (168)
T COG3194 11 KEAFAPFGDVIETDQ 25 (168)
T ss_pred hhhhccccccccccc
Confidence 578999999987543
No 275
>TIGR01848 PHA_reg_PhaR polyhydroxyalkanoate synthesis repressor PhaR. Poly-B-hydroxyalkanoates are lipidlike carbon/energy storage polymers found in granular inclusions. PhaR is a regulatory protein found in general near other proteins associated with polyhydroxyalkanoate (PHA) granule biosynthesis and utilization. It is found to be a DNA-binding homotetramer that is also capable of binding short chain hydroxyalkanoic acids and PHA granules. PhaR may regulate the expression of itself, of the phasins that coat granules, and of enzymes that direct carbon flux into polymers stored in granules.
Probab=21.52 E-value=1.1e+02 Score=20.17 Aligned_cols=38 Identities=11% Similarity=0.031 Sum_probs=29.8
Q ss_pred CceEEEEcCCCCCCChHHHHhhhcCCCceeeeeEEEEcCCCCC
Q psy11608 54 ATTCVWVDGVAGKCGTGEHNRVNLGYGKSLATTCVWVDGVAGK 96 (99)
Q Consensus 54 ~~~~lfVg~l~~~~s~~~L~~~F~~fG~i~~~~~v~~d~~~g~ 96 (99)
|+++||=-.-+..+|-+||+++-..=-++ .| +|..||.
T Consensus 7 ~NRRLYDT~tS~YITLedi~~lV~~g~~f----~V-~DakTge 44 (107)
T TIGR01848 7 PNRRLYDTETSSYVTLEDIRDLVREGREF----QV-VDSKSGD 44 (107)
T ss_pred CCCcccCCCccceeeHHHHHHHHHCCCeE----EE-EECCCCc
Confidence 57889988889999999999987664444 33 8888885
No 276
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=21.50 E-value=56 Score=23.85 Aligned_cols=27 Identities=7% Similarity=0.084 Sum_probs=23.5
Q ss_pred eEEEEcCCCCCCChHHHHhhhc--CCCce
Q psy11608 56 TCVWVDGVAGKCGTGEHNRVNL--GYGKS 82 (99)
Q Consensus 56 ~~lfVg~l~~~~s~~~L~~~F~--~fG~i 82 (99)
.-+.|||||.+++.+-|.+.+. .||.+
T Consensus 98 ~~~vv~NlPy~is~~il~~ll~~~~~g~~ 126 (262)
T PF00398_consen 98 PLLVVGNLPYNISSPILRKLLELYRFGRV 126 (262)
T ss_dssp EEEEEEEETGTGHHHHHHHHHHHGGGCEE
T ss_pred ceEEEEEecccchHHHHHHHhhccccccc
Confidence 5688999999999999999987 67766
No 277
>PF13773 DUF4170: Domain of unknown function (DUF4170)
Probab=21.34 E-value=91 Score=18.90 Aligned_cols=25 Identities=28% Similarity=0.284 Sum_probs=19.2
Q ss_pred EeCCHHHHHHHHHhhCCeEeCCeEE
Q psy11608 21 QYTDIASVVRAMRAMDGEYVGHNRV 45 (99)
Q Consensus 21 ~F~~~~~a~~Ai~~m~G~~i~~~~i 45 (99)
.|.|.++|..|.++.-++.+.+-.+
T Consensus 31 ~fp~y~~A~~aWrakAq~TVDnA~m 55 (69)
T PF13773_consen 31 IFPDYASAYAAWRAKAQRTVDNAHM 55 (69)
T ss_pred cCCChHHHHHHHHHHHhCchhccee
Confidence 4778899999999877777766444
No 278
>KOG4019|consensus
Probab=21.09 E-value=1.6e+02 Score=21.35 Aligned_cols=39 Identities=5% Similarity=0.102 Sum_probs=30.7
Q ss_pred CCCCeEEEEeCCHHHHHHHHHhhCCeEeCCe-EEEEeecC
Q psy11608 13 SASAFAFVQYTDIASVVRAMRAMDGEYVGHN-RVNLGYGK 51 (99)
Q Consensus 13 ~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~-~i~v~~~k 51 (99)
+|.++-=|.|.+++.|.+|...+.+..+.++ .++.-+++
T Consensus 49 rsfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~yfaQ 88 (193)
T KOG4019|consen 49 RSFRRVRINFSNPEAAADARIKLHSTSFNGKNELKLYFAQ 88 (193)
T ss_pred HhhceeEEeccChhHHHHHHHHhhhcccCCCceEEEEEcc
Confidence 4556667889999999999999888877776 66666654
No 279
>cd04492 YhaM_OBF_like YhaM_OBF_like: A subfamily of OB folds similar to that found in Bacillus subtilis YhaM and Staphylococcus aureus cmp-binding factor-1 (SaCBF1). Both these proteins are 3'-to-5'exoribonucleases. YhaM requires Mn2+ or Co2+ for activity and is inactive in the presence of Mg2+. YhaM also has a Mn2+ dependent 3'-to-5'single-stranded DNA exonuclease activity. SaCBF is also a double-stranded DNA binding protein, binding specifically to cmp, the replication enhancer found in S. aureus plasmid pT181. Proteins in this group combine an N-terminal OB fold with a C-terminal HD domain. The HD domain is found in metal-dependent phosphohydrolases.
Probab=21.06 E-value=1.6e+02 Score=16.69 Aligned_cols=27 Identities=4% Similarity=0.160 Sum_probs=19.2
Q ss_pred ceEEEEEeeCCCCCCeEEEEeCCHHHH
Q psy11608 2 VMYFVDIKKQSSASAFAFVQYTDIASV 28 (99)
Q Consensus 2 ~I~~v~ik~~~~s~gfaFV~F~~~~~a 28 (99)
.|.++..+...+++-|+++.+.|....
T Consensus 5 ~v~~~~~~~tk~g~~~~~~~l~D~tg~ 31 (83)
T cd04492 5 LIKSKELRTAKNGKPYLALTLQDKTGE 31 (83)
T ss_pred EEEEeeeecccCCCcEEEEEEEcCCCe
Confidence 366777776666666888888886654
No 280
>KOG3938|consensus
Probab=20.91 E-value=1.3e+02 Score=23.30 Aligned_cols=30 Identities=23% Similarity=0.471 Sum_probs=22.1
Q ss_pred CCCCeEEEEeCCHHHHHH---------HHHhhCCeEeCC
Q psy11608 13 SASAFAFVQYTDIASVVR---------AMRAMDGEYVGH 42 (99)
Q Consensus 13 ~s~gfaFV~F~~~~~a~~---------Ai~~m~G~~i~~ 42 (99)
+..|||||+=-.+.+... -|+++||.-+-|
T Consensus 146 NG~GyAFIKrIkegsvidri~~i~VGd~IEaiNge~ivG 184 (334)
T KOG3938|consen 146 NGAGYAFIKRIKEGSVIDRIEAICVGDHIEAINGESIVG 184 (334)
T ss_pred CCcceeeeEeecCCchhhhhhheeHHhHHHhhcCccccc
Confidence 799999999877766553 456789885544
No 281
>COG1556 Uncharacterized conserved protein [Function unknown]
Probab=20.87 E-value=72 Score=23.46 Aligned_cols=37 Identities=14% Similarity=0.100 Sum_probs=27.4
Q ss_pred CceEEEEcCCCCCCChHHHHhhhcCCCceeeeeEEEEcC
Q psy11608 54 ATTCVWVDGVAGKCGTGEHNRVNLGYGKSLATTCVWVDG 92 (99)
Q Consensus 54 ~~~~lfVg~l~~~~s~~~L~~~F~~fG~i~~~~~v~~d~ 92 (99)
|+.-.||+| |+.+.+=+|.-.|...|++. +..++++.
T Consensus 181 Ps~i~~IsG-PS~TADIEl~~V~GvHGP~~-~~vIiv~d 217 (218)
T COG1556 181 PSNINFISG-PSRTADIELILVVGVHGPRK-VVVIIVED 217 (218)
T ss_pred CcceEEeec-CCcccceeeEEEEeecCCeE-EEEEEEeC
Confidence 466788887 56666777889999999995 45665653
No 282
>KOG4574|consensus
Probab=20.71 E-value=57 Score=28.85 Aligned_cols=40 Identities=23% Similarity=0.434 Sum_probs=32.8
Q ss_pred CCCeEEEEeCCHHHHHHHHHhhCCeEe--CCeEEEEeecCCC
Q psy11608 14 ASAFAFVQYTDIASVVRAMRAMDGEYV--GHNRVNLGYGKSL 53 (99)
Q Consensus 14 s~gfaFV~F~~~~~a~~Ai~~m~G~~i--~~~~i~v~~~k~~ 53 (99)
.-.-|-|.|...++|..|..+++|+.+ -|-+.+|.+++..
T Consensus 333 ~~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~ 374 (1007)
T KOG4574|consen 333 DLNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTL 374 (1007)
T ss_pred cccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecccc
Confidence 345688999999999999999999955 3568888888753
No 283
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=20.52 E-value=3.3e+02 Score=21.93 Aligned_cols=62 Identities=6% Similarity=0.041 Sum_probs=39.7
Q ss_pred CCHHHHHHHHHhhCCeEeCCeEEEEee-cC----------------CCCceEEEEcCCCCCCChHHHHhhhcCCCceeee
Q psy11608 23 TDIASVVRAMRAMDGEYVGHNRVNLGY-GK----------------SLATTCVWVDGVAGKCGTGEHNRVNLGYGKSLAT 85 (99)
Q Consensus 23 ~~~~~a~~Ai~~m~G~~i~~~~i~v~~-~k----------------~~~~~~lfVg~l~~~~s~~~L~~~F~~fG~i~~~ 85 (99)
.++.+...|+..|...- -|-|.- |+ ..++-..|.- |+.+...+||++.|.+|+.+ .+
T Consensus 267 ~~~~el~~ai~~l~~~d----~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lv-lsat~K~~dlkei~~~f~~~-~i 340 (407)
T COG1419 267 YSPKELAEAIEALRDCD----VILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLV-LSATTKYEDLKEIIKQFSLF-PI 340 (407)
T ss_pred cCHHHHHHHHHHhhcCC----EEEEeCCCCCccCHHHHHHHHHHHhccccceEEEE-EecCcchHHHHHHHHHhccC-Cc
Confidence 46677777887776541 122221 11 1234455555 78899999999999999988 44
Q ss_pred eEEEE
Q psy11608 86 TCVWV 90 (99)
Q Consensus 86 ~~v~~ 90 (99)
..+++
T Consensus 341 ~~~I~ 345 (407)
T COG1419 341 DGLIF 345 (407)
T ss_pred ceeEE
Confidence 55545
No 284
>PHA02097 hypothetical protein
Probab=20.51 E-value=99 Score=17.82 Aligned_cols=19 Identities=21% Similarity=0.340 Sum_probs=14.2
Q ss_pred eEEEEEeeCCCCCCeEEEE
Q psy11608 3 MYFVDIKKQSSASAFAFVQ 21 (99)
Q Consensus 3 I~~v~ik~~~~s~gfaFV~ 21 (99)
|-+|.+-++++..||-|++
T Consensus 40 i~~ikvv~~~n~ng~~~~h 58 (59)
T PHA02097 40 IAGVKVVKDANYNGFELVH 58 (59)
T ss_pred eCCcEEEecCCCCcEEEec
Confidence 4456677788888988875
No 285
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=20.49 E-value=44 Score=25.62 Aligned_cols=19 Identities=16% Similarity=0.291 Sum_probs=16.3
Q ss_pred CCCChHHHHhhhcCCCcee
Q psy11608 65 GKCGTGEHNRVNLGYGKSL 83 (99)
Q Consensus 65 ~~~s~~~L~~~F~~fG~i~ 83 (99)
.++++++|.++|..||+.-
T Consensus 139 n~~~e~~L~~i~~~yGEe~ 157 (305)
T TIGR00006 139 NTYSEEDLERILKKYGEEK 157 (305)
T ss_pred hhCCHHHHHHHHHHhcCcc
Confidence 3569999999999999873
No 286
>COG0642 BaeS Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=20.39 E-value=2.8e+02 Score=19.06 Aligned_cols=28 Identities=11% Similarity=0.082 Sum_probs=23.0
Q ss_pred ceEEEEcCCCCCCChHHHHhhhcCCCce
Q psy11608 55 TTCVWVDGVAGKCGTGEHNRVNLGYGKS 82 (99)
Q Consensus 55 ~~~lfVg~l~~~~s~~~L~~~F~~fG~i 82 (99)
.-.|.|.+--+.++++.++..|++|-.-
T Consensus 259 ~i~i~V~D~G~Gi~~~~~~~if~~~~~~ 286 (336)
T COG0642 259 QVTISVEDTGPGIPEEELERIFEPFFRT 286 (336)
T ss_pred eEEEEEEcCCCCCCHHHHHHhccCeecc
Confidence 3568888778889999999999998655
No 287
>COG2469 Uncharacterized conserved protein [Function unknown]
Probab=20.32 E-value=2e+02 Score=22.11 Aligned_cols=63 Identities=11% Similarity=-0.011 Sum_probs=40.7
Q ss_pred CeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecCC-CCceEEEEcCCCCCCChHHHHhhhcCCCce
Q psy11608 16 AFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKS-LATTCVWVDGVAGKCGTGEHNRVNLGYGKS 82 (99)
Q Consensus 16 gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k~-~~~~~lfVg~l~~~~s~~~L~~~F~~fG~i 82 (99)
.+-=|.|.+..+++++..++||....-.+| .-... .+.+.+++ +|.+.+.+.|+..|+..=+.
T Consensus 143 k~v~I~~~~l~s~E~~~~evngk~~~vl~v--~H~~~t~~vts~v~--~~~~~t~~~l~~~lq~~~eK 206 (284)
T COG2469 143 KQVRILLSDLGSVENDKREVNGKTKIVLKV--RHVENTKVVTSLVF--CPDSNTLSMLYSYLQNIKEK 206 (284)
T ss_pred CceEEEeccccchhhhhhhcCCceEEEEEE--EeeccCceEEEEEE--eeCCCchHHHHHHHHHHHHh
Confidence 344578999999999999999986544333 32222 22344443 45667788888888765433
No 288
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=20.15 E-value=46 Score=25.35 Aligned_cols=19 Identities=21% Similarity=0.288 Sum_probs=16.3
Q ss_pred CCCChHHHHhhhcCCCcee
Q psy11608 65 GKCGTGEHNRVNLGYGKSL 83 (99)
Q Consensus 65 ~~~s~~~L~~~F~~fG~i~ 83 (99)
.++++++|.++|..||+.-
T Consensus 137 n~~~~~~L~~i~~~yGee~ 155 (296)
T PRK00050 137 NTYSEEELARIFKEYGEER 155 (296)
T ss_pred hhCCHHHHHHHHHHhcCcc
Confidence 3569999999999999873
Done!