Query psy11608
Match_columns 99
No_of_seqs 103 out of 1043
Neff 6.9
Searched_HMMs 29240
Date Fri Aug 16 23:00:26 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11608.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11608hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3md3_A Nuclear and cytoplasmic 99.9 1E-21 3.6E-26 130.3 13.0 95 2-97 26-128 (166)
2 1fxl_A Paraneoplastic encephal 99.9 1.6E-21 5.5E-26 129.5 12.1 95 2-97 28-129 (167)
3 1b7f_A Protein (SXL-lethal pro 99.9 1.6E-21 5.6E-26 130.0 11.8 94 2-96 29-129 (168)
4 1l3k_A Heterogeneous nuclear r 99.9 1E-20 3.5E-25 129.1 12.1 94 2-97 39-145 (196)
5 4f02_A Polyadenylate-binding p 99.9 5.2E-21 1.8E-25 134.3 10.7 92 2-94 41-141 (213)
6 2qfj_A FBP-interacting repress 99.8 1E-20 3.4E-25 130.9 11.6 95 2-97 54-166 (216)
7 2g4b_A Splicing factor U2AF 65 99.8 2.2E-20 7.5E-25 125.1 11.7 91 2-97 41-135 (172)
8 2yh0_A Splicing factor U2AF 65 99.8 2.5E-20 8.6E-25 127.3 12.0 91 2-97 41-155 (198)
9 3tyt_A Heterogeneous nuclear r 99.8 2.4E-20 8.2E-25 131.6 9.4 79 2-82 31-150 (205)
10 3pgw_A U1-A; protein-RNA compl 99.8 5.8E-20 2E-24 132.5 11.1 50 2-51 39-88 (282)
11 2cjk_A Nuclear polyadenylated 99.8 2.4E-20 8.3E-25 124.4 7.3 93 2-97 29-128 (167)
12 3nmr_A Cugbp ELAV-like family 99.8 6.3E-20 2.2E-24 122.7 8.6 93 2-96 29-134 (175)
13 3smz_A Protein raver-1, ribonu 99.8 3.3E-19 1.1E-23 128.6 12.2 89 3-97 48-136 (284)
14 3sde_A Paraspeckle component 1 99.8 3E-19 1E-23 128.8 11.0 89 2-97 48-136 (261)
15 1fje_B Nucleolin RBD12, protei 99.8 7.6E-19 2.6E-23 118.3 10.7 72 11-83 50-127 (175)
16 3smz_A Protein raver-1, ribonu 99.8 8.1E-19 2.8E-23 126.6 11.4 93 2-96 121-224 (284)
17 2ghp_A U4/U6 snRNA-associated 99.8 6.9E-19 2.4E-23 127.4 8.2 91 2-93 144-248 (292)
18 2adc_A Polypyrimidine tract-bi 99.8 2.6E-18 8.8E-23 121.6 11.0 82 2-85 61-182 (229)
19 1qm9_A Polypyrimidine tract-bi 99.8 1.4E-18 4.9E-23 119.3 7.2 82 2-85 30-151 (198)
20 2ghp_A U4/U6 snRNA-associated 99.8 4.1E-18 1.4E-22 123.3 9.9 86 2-92 67-154 (292)
21 2kn4_A Immunoglobulin G-bindin 99.7 4.3E-18 1.5E-22 114.2 6.0 91 6-97 3-111 (158)
22 4f25_A Polyadenylate-binding p 99.7 6.3E-18 2.2E-22 109.1 6.2 70 2-71 31-113 (115)
23 3lqv_A PRE-mRNA branch site pr 99.6 1.7E-16 5.9E-21 101.5 2.6 77 2-82 34-110 (115)
24 2i2y_A Fusion protein consists 99.6 8.7E-16 3E-20 102.5 5.9 77 13-91 11-108 (150)
25 2hvz_A Splicing factor, argini 99.5 1.2E-14 4.2E-19 90.9 2.8 61 2-64 26-100 (101)
26 4fxv_A ELAV-like protein 1; RN 99.4 2.2E-13 7.7E-18 85.9 6.8 51 2-52 45-98 (99)
27 2a3j_A U1 small nuclear ribonu 99.4 5.6E-13 1.9E-17 88.1 6.2 53 2-54 59-111 (127)
28 2dgx_A KIAA0430 protein; RRM d 99.4 2.3E-12 7.8E-17 80.2 8.2 53 2-54 39-91 (96)
29 2wbr_A GW182, gawky, LD47780P; 99.4 3.9E-12 1.3E-16 80.1 8.9 46 2-50 33-78 (89)
30 2cpi_A CCR4-NOT transcription 99.4 2.7E-12 9.1E-17 81.9 8.2 53 2-54 44-102 (111)
31 2lea_A Serine/arginine-rich sp 99.4 1.9E-13 6.4E-18 90.6 2.7 80 16-97 5-88 (135)
32 3md1_A Nuclear and cytoplasmic 99.4 2.6E-12 8.8E-17 77.2 7.0 53 2-54 27-82 (83)
33 3bs9_A Nucleolysin TIA-1 isofo 99.3 2E-12 6.9E-17 78.3 6.4 53 2-54 32-87 (87)
34 2pe8_A Splicing factor 45; RRM 99.3 3.6E-12 1.2E-16 81.5 7.5 50 2-51 39-92 (105)
35 2cqi_A Nucleolysin TIAR; RNA r 99.3 7.5E-12 2.6E-16 78.3 8.7 53 2-54 41-94 (103)
36 1x4a_A Splicing factor, argini 99.3 4.1E-12 1.4E-16 80.3 7.5 52 2-53 48-99 (109)
37 3s8s_A Histone-lysine N-methyl 99.3 2.8E-12 9.7E-17 82.3 6.6 51 2-52 32-85 (110)
38 2e5h_A Zinc finger CCHC-type a 99.3 7.5E-12 2.6E-16 76.8 8.0 50 2-51 42-94 (94)
39 2lxi_A RNA-binding protein 10; 99.3 1.1E-12 3.6E-17 81.4 4.0 53 2-54 28-84 (91)
40 1jmt_A Splicing factor U2AF 35 99.3 2.8E-12 9.5E-17 81.8 5.9 49 2-50 53-103 (104)
41 2x1f_A MRNA 3'-END-processing 99.3 8E-12 2.7E-16 77.3 7.3 53 2-54 28-83 (96)
42 2cq3_A RNA-binding protein 9; 99.3 1.5E-11 5.3E-16 76.8 8.3 53 2-54 41-94 (103)
43 2lkz_A RNA-binding protein 5; 99.3 1.8E-12 6E-17 81.7 3.9 50 3-52 38-94 (95)
44 3v4m_A Splicing factor U2AF 65 99.3 7E-12 2.4E-16 80.1 6.5 50 2-51 41-95 (105)
45 3mdf_A Peptidyl-prolyl CIS-tra 99.3 6.2E-12 2.1E-16 75.8 5.9 50 2-51 33-85 (85)
46 1whw_A Hypothetical protein ri 99.3 1.2E-11 4.2E-16 76.6 7.3 53 2-54 34-89 (99)
47 2cqc_A Arginine/serine-rich sp 99.3 1.1E-11 3.9E-16 76.0 7.1 51 2-52 41-94 (95)
48 2dnz_A Probable RNA-binding pr 99.3 1.1E-11 3.6E-16 76.3 6.7 53 2-54 31-86 (95)
49 2dit_A HIV TAT specific factor 99.3 1.2E-11 4.1E-16 79.0 7.2 52 2-54 52-103 (112)
50 2do4_A Squamous cell carcinoma 99.3 1.4E-11 4.7E-16 76.6 7.0 53 2-54 43-97 (100)
51 1nu4_A U1A RNA binding domain; 99.3 3.5E-12 1.2E-16 78.8 4.2 53 2-54 38-90 (97)
52 2ywk_A Putative RNA-binding pr 99.3 1.1E-11 3.9E-16 76.1 6.2 51 2-52 42-94 (95)
53 2cq0_A Eukaryotic translation 99.3 1.6E-11 5.4E-16 76.8 7.0 53 2-54 41-96 (103)
54 3ns6_A Eukaryotic translation 99.3 3.1E-12 1.1E-16 80.3 3.6 51 2-52 38-92 (100)
55 2cqb_A Peptidyl-prolyl CIS-tra 99.3 1E-11 3.5E-16 77.4 5.9 53 2-54 38-93 (102)
56 3p5t_L Cleavage and polyadenyl 99.2 1.7E-12 5.8E-17 79.8 1.9 53 2-54 29-84 (90)
57 1oo0_B CG8781-PA, drosophila Y 99.2 1.6E-11 5.6E-16 77.5 6.6 53 2-54 52-107 (110)
58 2dgo_A Cytotoxic granule-assoc 99.2 2.2E-11 7.4E-16 77.5 7.0 52 2-53 41-95 (115)
59 1p27_B RNA-binding protein 8A; 99.2 8.2E-12 2.8E-16 78.3 4.8 53 2-54 49-104 (106)
60 1x5t_A Splicing factor 3B subu 99.2 1.4E-11 4.7E-16 75.9 5.6 53 2-54 31-87 (96)
61 2err_A Ataxin-2-binding protei 99.2 1.3E-11 4.4E-16 78.6 5.5 52 2-53 55-107 (109)
62 1x5p_A Negative elongation fac 99.2 4.7E-11 1.6E-15 74.1 7.9 50 2-54 39-88 (97)
63 4a8x_A RNA-binding protein wit 99.2 2.5E-11 8.6E-16 73.4 6.5 52 2-53 30-85 (88)
64 1x5s_A Cold-inducible RNA-bind 99.2 9.5E-12 3.2E-16 77.5 4.6 53 2-54 38-93 (102)
65 2dgw_A Probable RNA-binding pr 99.2 2.2E-11 7.5E-16 74.5 6.1 52 2-54 35-88 (91)
66 1x5u_A Splicing factor 3B subu 99.2 1.8E-11 6.2E-16 76.6 5.7 53 2-54 41-96 (105)
67 2dnm_A SRP46 splicing factor; 99.2 1.4E-11 4.8E-16 77.0 4.9 52 2-53 39-93 (103)
68 2cpz_A CUG triplet repeat RNA- 99.2 1.8E-11 6.2E-16 78.0 5.5 53 2-54 51-106 (115)
69 2dgs_A DAZ-associated protein 99.2 3.5E-11 1.2E-15 74.7 6.6 52 2-54 36-90 (99)
70 2dng_A Eukaryotic translation 99.2 2.8E-11 9.7E-16 75.7 6.2 51 3-54 41-94 (103)
71 1wi8_A EIF-4B, eukaryotic tran 99.2 3.3E-11 1.1E-15 75.5 6.5 51 3-54 41-95 (104)
72 4fxv_A ELAV-like protein 1; RN 99.2 1.8E-11 6.2E-16 77.0 5.3 43 54-97 18-60 (99)
73 2nlw_A Eukaryotic translation 99.2 2.3E-11 7.9E-16 76.8 5.6 51 2-52 47-99 (105)
74 3ucg_A Polyadenylate-binding p 99.2 5E-11 1.7E-15 72.3 6.9 51 2-53 32-85 (89)
75 2dgv_A HnRNP M, heterogeneous 99.2 1.7E-11 5.9E-16 74.9 4.9 53 2-54 34-87 (92)
76 1rk8_A CG8781-PA, CG8781-PA pr 99.2 2E-11 6.7E-16 82.7 5.6 77 20-97 11-113 (165)
77 2khc_A Testis-specific RNP-typ 99.2 2.9E-11 9.8E-16 77.2 5.9 50 2-51 66-118 (118)
78 2cpf_A RNA binding motif prote 99.2 2.4E-11 8.1E-16 75.2 5.4 52 2-53 31-88 (98)
79 3ulh_A THO complex subunit 4; 99.2 4E-11 1.4E-15 75.3 6.5 50 2-51 55-106 (107)
80 1x4h_A RNA-binding protein 28; 99.2 5.2E-11 1.8E-15 75.0 7.0 53 2-54 41-102 (111)
81 1x4g_A Nucleolysin TIAR; struc 99.2 6.7E-11 2.3E-15 74.8 7.5 50 2-54 51-100 (109)
82 2jrs_A RNA-binding protein 39; 99.2 1.5E-11 5.3E-16 78.3 4.4 53 2-54 52-107 (108)
83 2d9p_A Polyadenylate-binding p 99.2 2.8E-11 9.6E-16 75.6 5.6 53 2-54 41-94 (103)
84 2fy1_A RNA-binding motif prote 99.2 3E-11 1E-15 77.8 5.8 51 2-52 33-85 (116)
85 2krb_A Eukaryotic translation 99.2 9.5E-12 3.2E-16 74.9 3.2 47 2-48 33-81 (81)
86 2dnh_A Bruno-like 5, RNA bindi 99.2 2.4E-11 8.2E-16 76.0 5.1 53 2-54 41-98 (105)
87 2cph_A RNA binding motif prote 99.2 3.7E-11 1.3E-15 75.3 6.0 53 2-54 41-98 (107)
88 2kxn_B Transformer-2 protein h 99.2 4.3E-11 1.5E-15 78.6 6.4 52 2-53 72-126 (129)
89 3s8s_A Histone-lysine N-methyl 99.2 3.9E-11 1.3E-15 77.0 6.0 45 52-97 3-47 (110)
90 2jvr_A Nucleolar protein 3; RN 99.2 4.7E-11 1.6E-15 77.2 6.2 51 2-53 55-105 (111)
91 3s6e_A RNA-binding protein 39; 99.2 3.6E-11 1.2E-15 78.2 5.7 49 2-51 43-91 (114)
92 3egn_A RNA-binding protein 40; 99.2 3.5E-11 1.2E-15 79.4 5.5 51 3-53 80-130 (143)
93 1u6f_A Tcubp1, RNA-binding pro 99.2 4.8E-11 1.6E-15 78.1 6.1 53 2-54 68-123 (139)
94 1why_A Hypothetical protein ri 99.2 5.6E-11 1.9E-15 73.6 6.1 50 2-54 43-94 (97)
95 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.2 7.5E-11 2.6E-15 76.8 6.8 49 2-50 89-140 (140)
96 3n9u_C Cleavage and polyadenyl 99.2 6.5E-11 2.2E-15 80.3 6.6 51 2-52 83-136 (156)
97 2kn4_A Immunoglobulin G-bindin 99.2 7.7E-11 2.6E-15 78.5 6.6 52 2-53 96-150 (158)
98 2div_A TRNA selenocysteine ass 99.1 3.3E-11 1.1E-15 74.7 4.4 52 2-53 35-94 (99)
99 2ytc_A PRE-mRNA-splicing facto 99.1 8.3E-11 2.8E-15 70.9 6.0 47 2-51 38-85 (85)
100 2la6_A RNA-binding protein FUS 99.1 3.4E-11 1.2E-15 74.8 4.4 46 6-51 51-99 (99)
101 2fc8_A NCL protein; structure 99.1 5.9E-11 2E-15 73.9 5.5 50 5-54 41-93 (102)
102 1x4e_A RNA binding motif, sing 99.1 1.7E-11 5.7E-16 74.1 2.8 50 2-51 31-83 (85)
103 2do0_A HnRNP M, heterogeneous 99.1 1.2E-10 4.1E-15 73.8 7.0 51 2-52 41-93 (114)
104 2ki2_A SS-DNA binding protein 99.1 1.9E-11 6.6E-16 74.6 3.0 51 2-53 27-80 (90)
105 2dhg_A TRNA selenocysteine ass 99.1 3.2E-11 1.1E-15 75.4 4.1 53 2-54 36-91 (104)
106 1p1t_A Cleavage stimulation fa 99.1 2.5E-11 8.5E-16 75.7 3.5 53 2-54 34-89 (104)
107 3ue2_A Poly(U)-binding-splicin 99.1 4.9E-11 1.7E-15 77.9 5.0 50 2-51 51-107 (118)
108 2dgp_A Bruno-like 4, RNA bindi 99.1 5.5E-11 1.9E-15 74.5 5.0 53 2-54 39-97 (106)
109 2cqp_A RNA-binding protein 12; 99.1 2.3E-11 8E-16 75.2 3.2 43 12-54 54-96 (98)
110 1sjq_A Polypyrimidine tract-bi 99.1 1.1E-10 3.8E-15 75.2 6.5 50 2-54 42-93 (105)
111 2kt5_A RNA and export factor-b 99.1 1.4E-10 4.7E-15 74.8 7.0 52 2-53 61-114 (124)
112 1fjc_A Nucleolin RBD2, protein 99.1 5.5E-11 1.9E-15 73.3 4.8 46 9-54 47-92 (96)
113 2j76_E EIF-4B, EIF4B, eukaryot 99.1 5.3E-11 1.8E-15 74.4 4.7 50 3-53 45-98 (100)
114 4f02_A Polyadenylate-binding p 99.1 7.2E-11 2.5E-15 82.4 5.8 51 2-52 129-180 (213)
115 2la4_A Nuclear and cytoplasmic 99.1 8.5E-11 2.9E-15 73.1 5.5 48 2-52 53-100 (101)
116 2cpe_A RNA-binding protein EWS 99.1 8.3E-11 2.8E-15 74.5 5.5 50 5-54 52-104 (113)
117 3ex7_B RNA-binding protein 8A; 99.1 5.7E-11 1.9E-15 76.6 4.8 52 2-53 48-102 (126)
118 2i2y_A Fusion protein consists 99.1 9.3E-11 3.2E-15 77.9 5.9 50 2-53 99-148 (150)
119 2cqd_A RNA-binding region cont 99.1 1.9E-10 6.7E-15 73.2 7.2 50 2-52 43-95 (116)
120 1h2v_Z 20 kDa nuclear CAP bind 99.1 1.4E-10 4.7E-15 77.5 6.8 53 2-54 65-120 (156)
121 2mss_A Protein (musashi1); RNA 99.1 2.6E-11 8.9E-16 71.7 2.8 48 2-50 25-75 (75)
122 1wg1_A KIAA1579 protein, homol 99.1 8.9E-11 3.1E-15 71.7 5.3 47 3-52 31-77 (88)
123 2jwn_A Embryonic polyadenylate 99.1 1.7E-10 5.9E-15 74.1 6.8 51 2-53 62-115 (124)
124 2cpx_A Hypothetical protein FL 99.1 1.2E-10 4.1E-15 73.9 6.0 50 4-54 57-106 (115)
125 2cq4_A RNA binding motif prote 99.1 1.3E-10 4.5E-15 73.8 6.2 50 2-52 51-103 (114)
126 2xnq_A Nuclear polyadenylated 99.1 2.8E-10 9.7E-15 71.0 7.6 47 2-53 49-95 (97)
127 3s7r_A Heterogeneous nuclear r 99.1 1.3E-10 4.3E-15 70.4 5.8 44 53-97 9-52 (87)
128 3md3_A Nuclear and cytoplasmic 99.1 1.5E-10 5.2E-15 76.0 6.7 50 2-51 113-165 (166)
129 2dnn_A RNA-binding protein 12; 99.1 2.2E-10 7.4E-15 73.7 7.0 49 2-51 41-91 (109)
130 2fc9_A NCL protein; structure 99.1 2.5E-10 8.5E-15 71.0 7.1 49 6-54 42-92 (101)
131 2ek1_A RNA-binding protein 12; 99.1 3.4E-11 1.2E-15 74.0 3.0 40 12-51 54-93 (95)
132 2dnq_A RNA-binding protein 4B; 99.1 2.1E-10 7E-15 70.1 6.5 48 2-54 34-81 (90)
133 2cpj_A Non-POU domain-containi 99.1 9.2E-11 3.2E-15 72.8 5.0 55 2-61 41-95 (99)
134 1s79_A Lupus LA protein; RRM, 99.1 1E-10 3.4E-15 74.3 5.0 49 2-51 37-87 (103)
135 1x4c_A Splicing factor, argini 99.1 3.7E-10 1.3E-14 71.4 7.7 48 2-53 41-93 (108)
136 1fje_B Nucleolin RBD12, protei 99.1 2.5E-10 8.6E-15 76.3 7.2 46 9-54 130-175 (175)
137 2dh8_A DAZ-associated protein 99.1 1.4E-10 4.9E-15 72.6 5.6 51 2-53 42-95 (105)
138 2rs2_A Musashi-1, RNA-binding 99.1 3.9E-10 1.3E-14 71.7 7.7 52 2-54 51-105 (109)
139 2dis_A Unnamed protein product 99.1 1.5E-10 5.1E-15 72.8 5.7 51 3-53 36-92 (109)
140 1x4b_A Heterogeneous nuclear r 99.1 2.8E-10 9.6E-15 72.5 6.9 52 2-54 53-107 (116)
141 2cq1_A PTB-like protein L; RRM 99.1 4.2E-10 1.4E-14 71.4 7.6 50 2-54 41-92 (101)
142 1x4e_A RNA binding motif, sing 99.1 1.9E-10 6.6E-15 69.3 5.7 44 53-97 3-46 (85)
143 3r27_A HnRNP L, heterogeneous 99.1 2.4E-10 8.2E-15 73.0 6.3 49 2-53 47-97 (100)
144 2jvo_A Nucleolar protein 3; nu 99.1 3.3E-10 1.1E-14 72.1 6.6 48 2-54 57-104 (108)
145 2cq2_A Hypothetical protein LO 99.1 2.2E-10 7.7E-15 74.7 5.8 50 2-54 53-107 (114)
146 2e5j_A Methenyltetrahydrofolat 99.1 1.2E-10 4.1E-15 72.2 4.3 42 13-54 54-95 (97)
147 1rk8_A CG8781-PA, CG8781-PA pr 99.1 2.5E-10 8.5E-15 77.2 6.2 52 2-53 98-152 (165)
148 1whx_A Hypothetical protein ri 99.1 2E-11 6.9E-16 78.1 0.6 48 2-52 36-83 (111)
149 4f25_A Polyadenylate-binding p 99.1 1E-10 3.6E-15 74.9 3.9 40 54-94 4-43 (115)
150 2lxi_A RNA-binding protein 10; 99.1 3E-11 1E-15 74.8 1.3 43 55-98 1-44 (91)
151 2bz2_A Negative elongation fac 99.1 1.9E-10 6.4E-15 74.9 5.1 50 2-54 63-112 (121)
152 2dgu_A Heterogeneous nuclear r 99.1 6.9E-10 2.4E-14 69.4 7.6 48 2-54 37-84 (103)
153 1x5o_A RNA binding motif, sing 99.1 2.1E-10 7.1E-15 72.8 5.2 51 2-52 51-111 (114)
154 3md1_A Nuclear and cytoplasmic 99.1 3.1E-10 1.1E-14 67.9 5.6 42 55-97 1-42 (83)
155 1s79_A Lupus LA protein; RRM, 99.1 2E-10 6.8E-15 72.9 5.0 45 51-97 7-51 (103)
156 2lea_A Serine/arginine-rich sp 99.0 9.2E-11 3.1E-15 77.5 3.4 52 2-53 73-127 (135)
157 3bs9_A Nucleolysin TIA-1 isofo 99.0 3E-10 1E-14 68.5 5.2 44 53-97 4-47 (87)
158 2g4b_A Splicing factor U2AF 65 99.0 3.3E-10 1.1E-14 75.2 5.8 49 2-50 120-171 (172)
159 2qfj_A FBP-interacting repress 99.0 3E-10 1E-14 77.9 5.8 53 2-54 151-206 (216)
160 1x4d_A Matrin 3; structural ge 99.0 2.8E-10 9.5E-15 72.7 5.2 49 2-53 42-92 (102)
161 2div_A TRNA selenocysteine ass 99.0 2.7E-10 9.2E-15 70.5 4.9 45 52-97 6-51 (99)
162 3s7r_A Heterogeneous nuclear r 99.0 6.4E-10 2.2E-14 67.2 6.5 48 2-50 37-87 (87)
163 2cpd_A Apobec-1 stimulating pr 99.0 1E-09 3.5E-14 68.0 7.6 48 2-54 43-90 (99)
164 1wf1_A RNA-binding protein RAL 99.0 2.9E-10 9.9E-15 71.9 5.0 46 2-52 54-99 (110)
165 2dnz_A Probable RNA-binding pr 99.0 4.6E-10 1.6E-14 68.8 5.8 44 53-97 3-46 (95)
166 1x5t_A Splicing factor 3B subu 99.0 2.2E-10 7.6E-15 70.4 4.3 45 53-97 3-47 (96)
167 1uaw_A Mouse-musashi-1; RNP-ty 99.0 1.5E-10 5E-15 68.4 3.3 48 2-50 26-76 (77)
168 2dgs_A DAZ-associated protein 99.0 4.2E-10 1.4E-14 69.7 5.6 44 53-97 8-51 (99)
169 2diu_A KIAA0430 protein; struc 99.0 2.5E-10 8.7E-15 72.7 4.6 40 15-54 46-85 (96)
170 1fj7_A Nucleolin RBD1, protein 99.0 2.1E-10 7.3E-15 71.3 4.1 42 12-54 55-96 (101)
171 2hzc_A Splicing factor U2AF 65 99.0 6.9E-10 2.4E-14 66.9 6.3 44 2-49 43-86 (87)
172 2db1_A Heterogeneous nuclear r 99.0 1.9E-10 6.5E-15 74.2 4.0 48 3-51 47-96 (118)
173 2d9o_A DNAJ (HSP40) homolog, s 99.0 5.4E-10 1.9E-14 71.1 6.1 49 2-54 43-91 (100)
174 2x1f_A MRNA 3'-END-processing 99.0 2.2E-10 7.7E-15 70.7 4.2 43 54-97 1-43 (96)
175 1sjr_A Polypyrimidine tract-bi 99.0 6.2E-10 2.1E-14 76.8 6.6 51 2-53 72-124 (164)
176 3mdf_A Peptidyl-prolyl CIS-tra 99.0 2.4E-10 8.2E-15 68.7 4.0 45 52-97 4-48 (85)
177 1uaw_A Mouse-musashi-1; RNP-ty 99.0 3.1E-10 1.1E-14 67.0 4.4 41 56-97 1-41 (77)
178 2dgt_A RNA-binding protein 30; 99.0 1.2E-09 4.2E-14 66.9 7.2 48 2-54 36-83 (92)
179 1wex_A Hypothetical protein (r 99.0 3E-10 1E-14 72.4 4.6 50 2-54 41-92 (104)
180 2lkz_A RNA-binding protein 5; 99.0 1.9E-10 6.5E-15 72.2 3.6 44 54-98 8-53 (95)
181 2la6_A RNA-binding protein FUS 99.0 5.7E-10 1.9E-14 69.2 5.7 44 53-97 11-62 (99)
182 3q2s_C Cleavage and polyadenyl 99.0 2.1E-10 7.3E-15 81.9 4.3 50 2-51 96-148 (229)
183 2cqc_A Arginine/serine-rich sp 99.0 4.9E-10 1.7E-14 68.6 5.1 45 52-97 12-56 (95)
184 2hgl_A HNRPF protein, heteroge 99.0 1.6E-10 5.4E-15 77.1 3.0 48 3-51 74-123 (136)
185 2cqg_A TDP-43, TAR DNA-binding 99.0 1.4E-09 5E-14 67.7 7.2 50 2-53 41-93 (103)
186 2dnp_A RNA-binding protein 14; 99.0 1.5E-09 5.1E-14 66.2 7.1 47 2-53 35-81 (90)
187 2cqh_A IGF-II mRNA-binding pro 99.0 5.2E-10 1.8E-14 68.6 5.0 41 14-54 43-84 (93)
188 1whw_A Hypothetical protein ri 99.0 4.8E-10 1.6E-14 69.3 4.8 45 52-97 5-49 (99)
189 2e5h_A Zinc finger CCHC-type a 99.0 5E-10 1.7E-14 68.5 4.8 44 53-97 14-57 (94)
190 1why_A Hypothetical protein ri 99.0 3.7E-10 1.3E-14 69.8 4.3 44 42-85 4-47 (97)
191 1sjq_A Polypyrimidine tract-bi 99.0 2.4E-10 8.3E-15 73.6 3.5 40 51-91 12-51 (105)
192 2yh0_A Splicing factor U2AF 65 99.0 7E-10 2.4E-14 75.1 6.0 53 2-54 140-195 (198)
193 2e5g_A U6 snRNA-specific termi 99.0 8E-10 2.7E-14 68.0 5.8 43 52-97 5-47 (94)
194 2cq0_A Eukaryotic translation 99.0 8.3E-10 2.9E-14 68.8 5.9 44 53-97 13-56 (103)
195 1p27_B RNA-binding protein 8A; 99.0 7.5E-10 2.6E-14 69.2 5.7 44 53-97 21-64 (106)
196 2kvi_A Nuclear polyadenylated 99.0 3.3E-10 1.1E-14 70.1 3.9 47 2-53 37-83 (96)
197 2cjk_A Nuclear polyadenylated 99.0 3.6E-10 1.2E-14 74.7 4.3 51 2-53 113-166 (167)
198 3ucg_A Polyadenylate-binding p 99.0 6.3E-10 2.2E-14 67.3 5.0 42 55-97 6-47 (89)
199 2khc_A Testis-specific RNP-typ 99.0 6.8E-10 2.3E-14 70.7 5.3 43 54-97 39-81 (118)
200 2ad9_A Polypyrimidine tract-bi 99.0 4.4E-10 1.5E-14 73.7 4.5 50 2-54 57-108 (119)
201 2dgp_A Bruno-like 4, RNA bindi 99.0 2.7E-10 9.2E-15 71.3 3.2 44 53-97 11-54 (106)
202 2cpy_A RNA-binding protein 12; 99.0 5.6E-10 1.9E-14 71.3 4.7 48 4-52 44-93 (114)
203 3zzy_A Polypyrimidine tract-bi 99.0 1.8E-09 6E-14 72.0 7.3 50 2-53 54-106 (130)
204 1x4h_A RNA-binding protein 28; 99.0 4.7E-10 1.6E-14 70.6 4.3 44 53-97 13-56 (111)
205 2lcw_A RNA-binding protein FUS 98.5 5.9E-11 2E-15 75.8 0.0 49 6-54 45-96 (116)
206 2dnh_A Bruno-like 5, RNA bindi 99.0 1.2E-09 4.2E-14 68.1 6.0 42 53-96 13-54 (105)
207 2dnm_A SRP46 splicing factor; 99.0 7.6E-10 2.6E-14 69.0 5.0 44 53-97 11-54 (103)
208 2m2b_A RNA-binding protein 10; 99.0 2.8E-10 9.6E-15 74.3 3.1 45 53-98 21-67 (131)
209 2do4_A Squamous cell carcinoma 99.0 1E-09 3.6E-14 68.0 5.5 45 51-97 13-57 (100)
210 2rs2_A Musashi-1, RNA-binding 99.0 6.1E-10 2.1E-14 70.8 4.5 44 53-97 23-66 (109)
211 2cqg_A TDP-43, TAR DNA-binding 99.0 7.9E-10 2.7E-14 68.9 4.9 44 53-97 13-56 (103)
212 3ns6_A Eukaryotic translation 99.0 2.2E-10 7.6E-15 71.7 2.3 44 54-98 5-54 (100)
213 2cqb_A Peptidyl-prolyl CIS-tra 99.0 5.9E-10 2E-14 69.3 4.1 44 53-97 10-53 (102)
214 2mss_A Protein (musashi1); RNA 98.9 3.8E-10 1.3E-14 66.5 3.1 40 57-97 1-40 (75)
215 1iqt_A AUF1, heterogeneous nuc 98.9 2.4E-10 8.3E-15 67.3 2.2 48 2-50 25-75 (75)
216 2cqd_A RNA-binding region cont 98.9 8.3E-10 2.8E-14 70.3 4.8 44 53-97 15-58 (116)
217 1wg5_A Heterogeneous nuclear r 98.9 8.9E-10 3.1E-14 69.3 4.8 50 2-52 41-93 (104)
218 1x5u_A Splicing factor 3B subu 98.9 7.9E-10 2.7E-14 69.0 4.5 44 53-97 13-56 (105)
219 1x4d_A Matrin 3; structural ge 98.9 4E-10 1.4E-14 71.9 3.1 40 52-92 12-52 (102)
220 2dh8_A DAZ-associated protein 98.9 9.1E-10 3.1E-14 68.8 4.7 44 53-97 14-57 (105)
221 3p5t_L Cleavage and polyadenyl 98.9 6.7E-10 2.3E-14 68.0 3.9 41 56-97 2-44 (90)
222 1oo0_B CG8781-PA, drosophila Y 98.9 8.8E-10 3E-14 69.4 4.6 45 52-97 23-67 (110)
223 2lmi_A GRSF-1, G-rich sequence 98.9 1.9E-10 6.7E-15 72.7 1.5 48 3-51 41-90 (107)
224 2cpz_A CUG triplet repeat RNA- 98.9 9.6E-10 3.3E-14 69.9 4.8 43 54-97 24-66 (115)
225 2dgo_A Cytotoxic granule-assoc 98.9 1.8E-09 6.2E-14 68.5 5.8 44 53-97 13-56 (115)
226 2m2b_A RNA-binding protein 10; 98.9 1.6E-10 5.4E-15 75.5 0.8 47 6-53 55-108 (131)
227 3nmr_A Cugbp ELAV-like family 98.9 1.2E-09 4.2E-14 72.3 5.1 49 2-50 121-174 (175)
228 1b7f_A Protein (SXL-lethal pro 98.9 1.2E-09 4.3E-14 72.0 5.0 49 2-50 115-168 (168)
229 2dhg_A TRNA selenocysteine ass 98.9 1.2E-09 4.1E-14 68.0 4.6 44 52-97 6-50 (104)
230 3ulh_A THO complex subunit 4; 98.9 2.2E-09 7.4E-14 67.2 5.8 43 53-97 27-69 (107)
231 1x5s_A Cold-inducible RNA-bind 98.9 7.6E-10 2.6E-14 68.8 3.7 45 52-97 9-53 (102)
232 1wez_A HnRNP H', FTP-3, hetero 98.9 5.9E-10 2E-14 70.3 3.1 47 5-52 43-91 (102)
233 2jrs_A RNA-binding protein 39; 98.9 2.3E-09 7.7E-14 68.1 5.9 43 53-96 24-66 (108)
234 1x4f_A Matrin 3; structural ge 98.9 7.6E-10 2.6E-14 71.9 3.7 49 2-53 52-102 (112)
235 4a8x_A RNA-binding protein wit 98.9 7.2E-10 2.5E-14 66.8 3.3 41 54-95 3-43 (88)
236 2e5i_A Heterogeneous nuclear r 98.9 3.8E-09 1.3E-13 69.6 7.0 49 2-53 51-102 (124)
237 1x4b_A Heterogeneous nuclear r 98.9 1.6E-09 5.3E-14 69.0 4.9 42 55-97 27-68 (116)
238 1iqt_A AUF1, heterogeneous nuc 98.9 3.6E-10 1.2E-14 66.5 1.7 40 57-97 1-40 (75)
239 2cpf_A RNA binding motif prote 98.9 9.9E-10 3.4E-14 67.8 3.8 40 53-93 3-42 (98)
240 2cq4_A RNA binding motif prote 98.9 1.4E-09 4.7E-14 69.0 4.6 42 55-97 25-66 (114)
241 2f3j_A RNA and export factor b 98.9 1.5E-09 5.1E-14 74.8 5.1 51 2-52 114-166 (177)
242 2cph_A RNA binding motif prote 98.9 1.2E-09 4.1E-14 68.3 4.2 44 53-97 13-57 (107)
243 3u1l_A PRE-mRNA-splicing facto 98.9 1.5E-09 5E-14 78.8 5.2 50 2-54 169-230 (240)
244 2kxn_B Transformer-2 protein h 98.9 1.3E-09 4.5E-14 71.4 4.5 45 52-97 43-87 (129)
245 2xs2_A Deleted in azoospermia- 98.9 1.8E-09 6.2E-14 67.1 4.9 42 54-97 8-49 (102)
246 2ek1_A RNA-binding protein 12; 98.9 1.6E-09 5.5E-14 66.3 4.5 43 54-97 14-56 (95)
247 1fxl_A Paraneoplastic encephal 98.9 1.8E-09 6E-14 70.9 5.0 49 2-50 114-167 (167)
248 2dng_A Eukaryotic translation 98.9 3.7E-09 1.3E-13 65.9 6.1 43 53-97 13-55 (103)
249 3ex7_B RNA-binding protein 8A; 98.9 1.9E-09 6.5E-14 69.3 4.8 45 52-97 19-63 (126)
250 3lqv_A PRE-mRNA branch site pr 98.9 2.3E-09 7.8E-14 68.0 5.1 45 52-97 5-49 (115)
251 3d2w_A TAR DNA-binding protein 98.9 1.9E-09 6.5E-14 66.4 4.6 33 53-85 9-41 (89)
252 1wf0_A TDP-43, TAR DNA-binding 98.9 2.9E-09 9.9E-14 64.6 5.2 33 53-85 3-35 (88)
253 3n9u_C Cleavage and polyadenyl 98.9 1.8E-09 6E-14 73.1 4.5 42 55-97 55-98 (156)
254 2ki2_A SS-DNA binding protein 98.9 4.9E-10 1.7E-14 68.2 1.6 41 56-97 2-42 (90)
255 2dis_A Unnamed protein product 98.9 8E-10 2.8E-14 69.4 2.6 46 51-97 4-51 (109)
256 3beg_B Splicing factor, argini 98.9 2.7E-09 9.1E-14 68.4 5.1 46 2-51 42-92 (115)
257 3pgw_S U1-70K; protein-RNA com 98.9 4.9E-09 1.7E-13 81.2 7.4 52 2-53 128-182 (437)
258 2ywk_A Putative RNA-binding pr 98.9 3E-09 1E-13 65.1 5.1 42 53-96 14-55 (95)
259 2cq1_A PTB-like protein L; RRM 98.9 2.3E-09 7.8E-14 68.0 4.7 33 53-85 13-45 (101)
260 1x5o_A RNA binding motif, sing 98.9 3.8E-09 1.3E-13 66.9 5.7 43 53-97 23-65 (114)
261 2e44_A Insulin-like growth fac 98.9 5.5E-10 1.9E-14 68.7 1.7 43 54-96 14-56 (96)
262 1p1t_A Cleavage stimulation fa 98.9 1.6E-09 5.6E-14 67.3 3.8 42 55-97 8-49 (104)
263 1wez_A HnRNP H', FTP-3, hetero 98.9 3.5E-09 1.2E-13 66.7 5.4 43 52-97 12-54 (102)
264 2cpe_A RNA-binding protein EWS 98.9 2.3E-09 7.8E-14 67.8 4.5 45 53-97 13-64 (113)
265 2hgn_A Heterogeneous nuclear r 98.9 9.9E-10 3.4E-14 73.5 3.0 79 15-97 1-85 (139)
266 2ku7_A MLL1 PHD3-CYP33 RRM chi 98.9 2.1E-09 7.2E-14 69.8 4.4 44 53-97 61-104 (140)
267 2cpi_A CCR4-NOT transcription 98.9 2E-09 6.7E-14 68.4 4.1 43 53-96 13-58 (111)
268 2cqp_A RNA-binding protein 12; 98.9 2.8E-09 9.5E-14 65.7 4.7 43 54-97 14-56 (98)
269 2jwn_A Embryonic polyadenylate 98.9 2E-09 6.8E-14 69.1 4.2 66 31-97 5-77 (124)
270 1wi8_A EIF-4B, eukaryotic tran 98.9 3.1E-09 1.1E-13 66.4 4.9 43 53-97 13-56 (104)
271 2fy1_A RNA-binding motif prote 98.9 3.4E-09 1.2E-13 68.0 5.2 43 53-97 5-47 (116)
272 2cpy_A RNA-binding protein 12; 98.9 2.7E-09 9.1E-14 68.1 4.7 44 52-97 12-56 (114)
273 2d9p_A Polyadenylate-binding p 98.9 3.9E-09 1.3E-13 65.7 5.3 38 53-91 13-50 (103)
274 1wex_A Hypothetical protein (r 98.9 3.8E-09 1.3E-13 67.2 5.3 34 52-85 12-45 (104)
275 2ad9_A Polypyrimidine tract-bi 98.9 2.8E-09 9.4E-14 69.9 4.8 40 51-91 27-66 (119)
276 3r27_A HnRNP L, heterogeneous 98.8 3E-09 1E-13 67.9 4.7 35 51-85 17-51 (100)
277 1u6f_A Tcubp1, RNA-binding pro 98.8 2.1E-09 7.1E-14 70.3 3.9 43 54-97 41-83 (139)
278 2hgl_A HNRPF protein, heteroge 98.8 3.5E-09 1.2E-13 70.5 5.0 81 15-97 1-87 (136)
279 2dnl_A Cytoplasmic polyadenyla 98.8 1.8E-09 6.1E-14 68.9 3.4 40 53-94 6-45 (114)
280 1wel_A RNA-binding protein 12; 98.8 9.4E-10 3.2E-14 71.1 2.0 39 12-51 64-102 (124)
281 1l3k_A Heterogeneous nuclear r 98.8 6.3E-09 2.2E-13 70.3 6.2 51 2-53 130-183 (196)
282 2j8a_A Histone-lysine N-methyl 98.8 2.9E-09 9.9E-14 71.5 4.4 41 56-97 3-47 (136)
283 2do0_A HnRNP M, heterogeneous 98.8 5.9E-09 2E-13 65.8 5.6 42 53-96 13-54 (114)
284 2kt5_A RNA and export factor-b 98.8 5E-09 1.7E-13 67.4 5.3 43 53-97 33-75 (124)
285 1h2v_Z 20 kDa nuclear CAP bind 98.8 4.4E-09 1.5E-13 70.1 5.2 44 53-97 37-80 (156)
286 2cqi_A Nucleolysin TIAR; RNA r 98.8 3.3E-09 1.1E-13 66.0 4.2 41 53-94 13-53 (103)
287 2e5g_A U6 snRNA-specific termi 98.8 8.6E-09 2.9E-13 63.3 6.1 49 2-53 34-82 (94)
288 1wg5_A Heterogeneous nuclear r 98.8 4.6E-09 1.6E-13 66.0 4.9 43 54-97 14-56 (104)
289 2cq3_A RNA-binding protein 9; 98.8 7.8E-09 2.7E-13 64.3 5.9 40 53-93 13-52 (103)
290 3pgw_A U1-A; protein-RNA compl 98.8 9.5E-09 3.3E-13 73.6 7.1 48 2-51 233-281 (282)
291 2krb_A Eukaryotic translation 98.8 3.4E-09 1.2E-13 63.5 3.9 40 55-97 1-46 (81)
292 2hgm_A HNRPF protein, heteroge 98.8 2.4E-09 8.2E-14 70.6 3.3 46 5-51 72-119 (126)
293 1wel_A RNA-binding protein 12; 98.8 4.9E-09 1.7E-13 67.7 4.5 43 54-97 24-66 (124)
294 3q2s_C Cleavage and polyadenyl 98.8 5.2E-09 1.8E-13 74.7 4.9 43 54-97 67-111 (229)
295 2hgn_A Heterogeneous nuclear r 98.8 9.9E-10 3.4E-14 73.5 1.1 50 3-53 72-123 (139)
296 2dnq_A RNA-binding protein 4B; 98.8 8.5E-09 2.9E-13 62.8 5.2 34 52-85 5-38 (90)
297 2xs2_A Deleted in azoospermia- 98.8 3.8E-09 1.3E-13 65.6 3.5 49 2-52 35-85 (102)
298 2dgt_A RNA-binding protein 30; 98.8 7.2E-09 2.5E-13 63.3 4.4 34 52-85 7-40 (92)
299 1x4a_A Splicing factor, argini 98.8 7.3E-09 2.5E-13 65.1 4.5 33 53-85 20-52 (109)
300 3d2w_A TAR DNA-binding protein 98.8 1.9E-08 6.4E-13 61.8 6.2 47 2-54 37-85 (89)
301 1x4f_A Matrin 3; structural ge 98.8 8.2E-09 2.8E-13 66.9 4.7 34 52-85 22-56 (112)
302 2dgv_A HnRNP M, heterogeneous 98.8 1.1E-08 3.8E-13 62.2 5.0 34 53-86 6-39 (92)
303 2j76_E EIF-4B, EIF4B, eukaryot 98.8 4.1E-09 1.4E-13 65.7 3.1 42 54-97 18-60 (100)
304 1qm9_A Polypyrimidine tract-bi 98.8 5E-09 1.7E-13 71.4 3.8 49 2-52 147-196 (198)
305 2voo_A Lupus LA protein; RNA-b 98.8 3.4E-08 1.1E-12 68.7 8.1 69 24-93 63-146 (193)
306 2ytc_A PRE-mRNA-splicing facto 98.8 9.6E-09 3.3E-13 61.6 4.6 33 53-85 10-42 (85)
307 2dgx_A KIAA0430 protein; RRM d 98.8 5.6E-09 1.9E-13 64.6 3.6 40 54-94 8-51 (96)
308 2dha_A FLJ20171 protein; RRM d 98.7 2.3E-09 7.8E-14 70.3 1.7 47 3-50 54-102 (123)
309 2e44_A Insulin-like growth fac 98.7 1.6E-08 5.6E-13 62.0 5.5 51 2-53 41-92 (96)
310 2err_A Ataxin-2-binding protei 98.7 1.1E-08 3.9E-13 64.7 4.8 40 53-93 27-66 (109)
311 2adc_A Polypyrimidine tract-bi 98.7 1.7E-08 5.7E-13 71.0 6.0 49 2-52 178-227 (229)
312 2kvi_A Nuclear polyadenylated 98.7 1.2E-08 4.1E-13 63.0 4.5 34 52-85 7-41 (96)
313 2dnp_A RNA-binding protein 14; 98.7 5.7E-09 2E-13 63.6 2.8 35 51-85 5-39 (90)
314 2dnl_A Cytoplasmic polyadenyla 98.7 3.6E-08 1.2E-12 62.7 6.4 48 12-61 49-96 (114)
315 2cpj_A Non-POU domain-containi 98.7 1.8E-08 6.1E-13 62.3 4.8 33 53-85 13-45 (99)
316 1x4c_A Splicing factor, argini 98.7 1.6E-08 5.5E-13 63.7 4.6 37 54-91 14-50 (108)
317 1fj7_A Nucleolin RBD1, protein 98.7 1E-09 3.5E-14 68.1 -1.1 42 54-97 16-57 (101)
318 2voo_A Lupus LA protein; RNA-b 98.7 3.1E-08 1.1E-12 68.9 6.3 50 2-52 135-186 (193)
319 2lcw_A RNA-binding protein FUS 98.1 1.9E-09 6.6E-14 68.6 0.0 45 53-97 5-56 (116)
320 2j8a_A Histone-lysine N-methyl 98.7 1.8E-08 6.1E-13 67.7 4.5 50 2-51 32-94 (136)
321 3dxb_A Thioredoxin N-terminall 98.7 1.6E-08 5.4E-13 70.8 4.1 50 2-51 155-211 (222)
322 2la4_A Nuclear and cytoplasmic 98.7 2.6E-08 8.8E-13 61.7 4.7 32 54-85 26-57 (101)
323 2fc9_A NCL protein; structure 98.7 1.9E-08 6.4E-13 62.3 4.0 30 53-82 13-42 (101)
324 3tht_A Alkylated DNA repair pr 98.7 3.8E-08 1.3E-12 74.6 6.5 49 2-53 46-99 (345)
325 2jvo_A Nucleolar protein 3; nu 98.7 2.9E-08 9.8E-13 63.0 4.9 33 53-85 29-61 (108)
326 2db1_A Heterogeneous nuclear r 98.7 3E-08 1E-12 63.7 4.9 42 54-97 16-60 (118)
327 2cqh_A IGF-II mRNA-binding pro 98.6 1.5E-08 5E-13 61.9 3.1 32 53-84 6-37 (93)
328 2fc8_A NCL protein; structure 98.6 3.5E-08 1.2E-12 61.1 4.9 42 52-97 12-53 (102)
329 2xnq_A Nuclear polyadenylated 98.6 3E-08 1E-12 61.6 4.4 33 53-85 20-53 (97)
330 2nlw_A Eukaryotic translation 98.6 2.1E-08 7.3E-13 62.9 3.7 40 55-97 15-60 (105)
331 2e5j_A Methenyltetrahydrofolat 98.6 2.9E-08 9.9E-13 61.2 4.2 38 53-92 17-54 (97)
332 2dgu_A Heterogeneous nuclear r 98.6 1.4E-08 4.9E-13 63.3 2.7 33 53-85 9-41 (103)
333 2cpx_A Hypothetical protein FL 98.6 7.4E-09 2.5E-13 65.5 1.4 33 52-84 22-54 (115)
334 2lmi_A GRSF-1, G-rich sequence 98.6 2.4E-08 8.2E-13 62.9 3.6 42 54-97 10-54 (107)
335 2f3j_A RNA and export factor b 98.6 2.7E-08 9.3E-13 68.4 4.1 42 54-97 87-128 (177)
336 1x4g_A Nucleolysin TIAR; struc 98.6 2.8E-08 9.5E-13 62.5 3.6 33 53-85 23-55 (109)
337 1whx_A Hypothetical protein ri 98.6 3.5E-08 1.2E-12 62.7 4.0 32 54-85 9-40 (111)
338 2dha_A FLJ20171 protein; RRM d 98.6 4.4E-08 1.5E-12 64.1 4.6 42 54-97 22-67 (123)
339 2dgw_A Probable RNA-binding pr 98.6 8.2E-08 2.8E-12 58.3 5.5 41 53-96 8-48 (91)
340 2a3j_A U1 small nuclear ribonu 98.6 2.7E-08 9.2E-13 65.4 3.5 34 52-85 26-63 (127)
341 3pgw_S U1-70K; protein-RNA com 98.6 3.4E-08 1.2E-12 76.5 4.6 44 53-97 100-143 (437)
342 1wf0_A TDP-43, TAR DNA-binding 98.6 3.2E-08 1.1E-12 59.9 3.4 49 2-54 31-79 (88)
343 2hvz_A Splicing factor, argini 98.6 2.4E-08 8.2E-13 61.8 2.7 35 56-91 1-35 (101)
344 1nu4_A U1A RNA binding domain; 98.6 4.7E-08 1.6E-12 59.9 4.0 34 52-85 5-42 (97)
345 2jvr_A Nucleolar protein 3; RN 98.6 2.8E-08 9.6E-13 64.0 2.8 42 43-84 15-58 (111)
346 1wf1_A RNA-binding protein RAL 98.5 5.6E-08 1.9E-12 61.2 3.9 32 54-85 26-58 (110)
347 3egn_A RNA-binding protein 40; 98.5 2.8E-08 9.5E-13 65.3 2.4 34 51-84 41-74 (143)
348 3beg_B Splicing factor, argini 98.5 3.1E-08 1.1E-12 63.3 2.4 32 54-85 15-46 (115)
349 2hgm_A HNRPF protein, heteroge 98.5 9E-08 3.1E-12 63.0 4.6 42 53-97 40-83 (126)
350 2cq2_A Hypothetical protein LO 98.5 3.7E-08 1.3E-12 64.1 2.7 34 52-85 22-57 (114)
351 2cpd_A Apobec-1 stimulating pr 98.5 9.4E-08 3.2E-12 59.0 4.3 33 53-85 13-47 (99)
352 2wbr_A GW182, gawky, LD47780P; 98.5 4.9E-08 1.7E-12 61.3 2.8 33 54-86 6-38 (89)
353 2dnr_A Synaptojanin-1; RRM dom 98.5 3.1E-07 1.1E-11 57.8 6.3 44 3-52 42-85 (91)
354 3sde_A Paraspeckle component 1 98.5 1.4E-07 5E-12 67.4 5.0 51 2-52 122-178 (261)
355 1fjc_A Nucleolin RBD2, protein 98.5 1E-07 3.4E-12 58.4 3.1 32 53-84 14-45 (96)
356 2hzc_A Splicing factor U2AF 65 98.4 1.6E-07 5.6E-12 56.2 3.6 28 52-79 3-30 (87)
357 2dnn_A RNA-binding protein 12; 98.4 2.4E-07 8.3E-12 59.3 4.4 40 55-97 16-55 (109)
358 1wg1_A KIAA1579 protein, homol 98.4 2.8E-07 9.6E-12 55.8 4.0 31 54-85 4-34 (88)
359 1sjr_A Polypyrimidine tract-bi 98.4 2.1E-07 7.1E-12 64.1 3.7 31 55-85 46-76 (164)
360 2e5i_A Heterogeneous nuclear r 98.4 3.6E-07 1.2E-11 60.0 4.7 31 56-86 26-56 (124)
361 3zzy_A Polypyrimidine tract-bi 98.4 4.8E-07 1.7E-11 60.0 5.2 31 55-85 28-58 (130)
362 3tyt_A Heterogeneous nuclear r 98.4 5.4E-07 1.8E-11 62.9 5.3 32 54-85 3-35 (205)
363 1x5p_A Negative elongation fac 98.3 1.2E-06 4.2E-11 53.8 5.4 31 53-85 13-43 (97)
364 3u1l_A PRE-mRNA-splicing facto 98.3 4.6E-07 1.6E-11 65.6 3.2 33 54-86 133-174 (240)
365 1ufw_A Synaptojanin 2; RNP dom 98.2 1.2E-06 4.1E-11 55.5 4.5 42 3-50 51-92 (95)
366 2diu_A KIAA0430 protein; struc 98.2 1.9E-06 6.4E-11 54.7 4.2 33 53-85 6-44 (96)
367 3tht_A Alkylated DNA repair pr 98.1 1.7E-06 5.8E-11 65.6 3.8 38 52-92 15-54 (345)
368 2bz2_A Negative elongation fac 98.1 3.7E-06 1.3E-10 54.3 4.5 31 53-85 37-67 (121)
369 1owx_A Lupus LA protein, SS-B, 98.0 2.4E-06 8.3E-11 56.1 2.1 41 54-95 17-58 (121)
370 2dit_A HIV TAT specific factor 97.7 5E-05 1.7E-09 47.8 4.4 44 51-96 11-65 (112)
371 2pe8_A Splicing factor 45; RRM 97.7 6.4E-05 2.2E-09 47.4 4.9 42 52-94 5-51 (105)
372 3ue2_A Poly(U)-binding-splicin 96.9 0.00082 2.8E-08 43.3 3.8 39 54-93 19-62 (118)
373 1owx_A Lupus LA protein, SS-B, 96.9 0.0011 3.7E-08 43.4 4.1 44 2-48 45-91 (121)
374 3v4m_A Splicing factor U2AF 65 96.8 0.00049 1.7E-08 43.2 2.2 41 53-94 3-53 (105)
375 2d9o_A DNAJ (HSP40) homolog, s 96.8 0.0011 3.9E-08 41.4 3.3 38 42-85 10-47 (100)
376 2l9w_A U4/U6 snRNA-associated- 96.6 0.0072 2.4E-07 39.3 6.3 34 15-48 62-95 (117)
377 1wey_A Calcipressin 1; structu 96.3 0.0045 1.5E-07 39.6 3.8 41 14-54 45-85 (104)
378 1whv_A Poly(A)-specific ribonu 95.8 0.01 3.4E-07 37.7 3.9 34 55-92 16-49 (100)
379 1jmt_A Splicing factor U2AF 35 95.8 0.00047 1.6E-08 43.2 -2.4 33 59-92 19-63 (104)
380 3ctr_A Poly(A)-specific ribonu 95.8 0.011 3.7E-07 37.6 3.9 33 56-92 7-39 (101)
381 2dhx_A Poly (ADP-ribose) polym 95.4 0.031 1.1E-06 35.6 5.2 53 16-69 48-100 (104)
382 3s6e_A RNA-binding protein 39; 95.3 0.045 1.5E-06 34.8 5.5 40 52-94 4-53 (114)
383 2dnr_A Synaptojanin-1; RRM dom 94.4 0.028 9.5E-07 35.0 2.8 39 53-92 5-51 (91)
384 3pq1_A Poly(A) RNA polymerase; 93.5 0.033 1.1E-06 43.6 2.2 37 55-95 53-89 (464)
385 1uw4_A UPF3X; nonsense mediate 89.8 0.41 1.4E-05 29.5 3.8 32 56-87 2-33 (91)
386 1ufw_A Synaptojanin 2; RNP dom 89.6 0.21 7.1E-06 31.3 2.4 33 53-85 13-54 (95)
387 1wwh_A Nucleoporin 35, nucleop 86.8 1.9 6.7E-05 27.8 5.7 30 12-42 56-85 (119)
388 2dhx_A Poly (ADP-ribose) polym 84.6 0.73 2.5E-05 29.2 2.8 31 55-85 8-43 (104)
389 3dxb_A Thioredoxin N-terminall 83.2 0.92 3.2E-05 30.8 3.1 26 67-93 141-166 (222)
390 3p3d_A Nucleoporin 53; structu 82.3 1.4 4.9E-05 29.0 3.6 32 14-46 61-92 (132)
391 2l08_A Regulator of nonsense t 80.4 1.1 3.9E-05 27.9 2.5 29 54-82 8-36 (97)
392 3lpe_A Putative transcription 74.9 8.5 0.00029 23.1 5.3 27 12-38 47-73 (92)
393 3d45_A Poly(A)-specific ribonu 73.0 3.4 0.00012 32.3 3.9 34 55-92 440-473 (507)
394 1wwh_A Nucleoporin 35, nucleop 72.6 3.4 0.00012 26.6 3.2 30 55-85 24-53 (119)
395 1wey_A Calcipressin 1; structu 72.2 2.8 9.5E-05 26.4 2.6 29 56-84 6-39 (104)
396 1uw4_A UPF3X; nonsense mediate 59.6 9.8 0.00034 23.1 3.3 29 13-41 43-71 (91)
397 2g0c_A ATP-dependent RNA helic 58.6 12 0.0004 21.2 3.4 42 3-50 33-74 (76)
398 1whv_A Poly(A)-specific ribonu 58.0 8.7 0.0003 24.0 2.9 20 16-35 50-69 (100)
399 1c9o_A CSPB, cold-shock protei 48.1 10 0.00035 21.3 1.9 18 7-24 5-22 (66)
400 3cam_A Cold-shock domain famil 47.7 11 0.00036 21.4 1.9 18 7-24 5-22 (67)
401 1h95_A CSD, Y-box binding prot 46.2 11 0.00038 22.0 1.9 17 8-24 13-29 (79)
402 2e5q_A PHD finger protein 19; 46.1 19 0.00064 20.7 2.7 19 8-26 28-46 (63)
403 2i9x_A Putative septation prot 45.1 19 0.00066 21.7 2.9 24 1-24 4-30 (87)
404 3a0j_A Cold shock protein; OB- 45.0 12 0.00042 21.5 1.9 17 8-24 6-22 (73)
405 3i2z_B RNA chaperone, negative 44.6 13 0.00043 21.3 1.9 18 7-24 9-26 (71)
406 3zzp_A TS9, ribosomal protein 44.4 40 0.0014 19.6 4.2 62 17-82 7-71 (77)
407 2e5p_A Protein PHF1, PHD finge 44.0 17 0.00058 21.1 2.4 19 8-26 30-48 (68)
408 1g6p_A Cold shock protein TMCS 43.9 13 0.00045 20.9 1.9 17 8-24 5-21 (66)
409 4bby_A Alkyldihydroxyacetoneph 41.3 20 0.00067 28.7 3.2 34 2-35 373-408 (658)
410 2k5n_A Putative cold-shock pro 41.1 19 0.00065 20.8 2.4 18 7-24 6-23 (74)
411 2i9z_A Putative septation prot 40.5 24 0.00083 22.1 2.9 24 1-24 4-30 (105)
412 2kjw_A TS9, 30S ribosomal prot 40.4 32 0.0011 21.0 3.4 62 17-82 7-71 (96)
413 2l9w_A U4/U6 snRNA-associated- 39.7 16 0.00054 23.5 2.0 31 55-85 21-56 (117)
414 2ia9_A Putative septation prot 39.7 26 0.00088 21.8 2.9 24 1-24 4-30 (100)
415 1igq_A Transcriptional repress 39.5 14 0.00049 21.1 1.6 17 8-24 26-42 (62)
416 3p8b_B Transcription antitermi 39.1 33 0.0011 22.0 3.6 26 13-38 41-66 (152)
417 3ulj_A LIN28B, DNA-binding pro 38.9 17 0.00057 22.0 1.9 15 8-22 13-27 (90)
418 2kcm_A Cold shock domain famil 38.5 22 0.00076 20.6 2.4 18 8-25 5-22 (74)
419 2x4i_A CAG38848, uncharacteriz 38.2 44 0.0015 21.2 3.9 68 19-91 41-114 (114)
420 2eqj_A Metal-response element- 36.5 26 0.00089 20.2 2.4 18 8-25 34-51 (66)
421 8tfv_A Protein (thanatin); bac 36.3 5.8 0.0002 17.6 -0.4 13 86-98 7-19 (21)
422 3aqq_A Calcium-regulated heat 35.9 23 0.00078 23.4 2.4 19 7-25 66-84 (147)
423 2ki0_A DS119; beta-alpha-beta, 35.9 8.3 0.00028 19.2 0.1 11 55-65 5-15 (36)
424 1id0_A PHOQ histidine kinase; 35.5 63 0.0021 19.4 4.3 39 44-82 63-101 (152)
425 1x60_A Sporulation-specific N- 32.4 14 0.00046 20.9 0.7 52 21-77 16-67 (79)
426 2m0o_A PHD finger protein 1; t 31.8 34 0.0011 20.4 2.4 15 12-26 51-65 (79)
427 2ytx_A Cold shock domain-conta 29.3 24 0.00083 21.4 1.5 11 14-24 27-37 (97)
428 2lss_A Cold shock-like protein 35.1 12 0.0004 21.4 0.0 17 8-24 9-25 (70)
429 2yty_A Cold shock domain-conta 28.8 24 0.0008 21.1 1.4 10 15-24 28-37 (88)
430 2r7k_A 5-formaminoimidazole-4- 28.6 77 0.0026 23.3 4.5 30 6-35 153-182 (361)
431 3g4p_A Beta-lactamase OXA-24; 28.5 9.9 0.00034 26.8 -0.5 27 68-96 7-33 (244)
432 1uta_A FTSN, MSGA, cell divisi 27.9 45 0.0016 18.8 2.5 53 21-78 16-68 (81)
433 3h7h_B Transcription elongatio 27.8 78 0.0027 19.5 3.7 29 12-40 48-76 (106)
434 1hdj_A Human HSP40, HDJ-1; mol 27.7 34 0.0012 19.2 1.9 17 62-78 10-26 (77)
435 2och_A Hypothetical protein DN 27.4 35 0.0012 18.9 1.9 17 62-78 15-31 (73)
436 4aj5_1 SKA3, spindle and kinet 27.1 15 0.00053 22.9 0.3 12 69-80 90-101 (101)
437 2dn9_A DNAJ homolog subfamily 27.0 35 0.0012 19.2 1.9 17 62-78 14-30 (79)
438 2ctp_A DNAJ homolog subfamily 26.9 36 0.0012 19.1 1.9 17 62-78 14-30 (78)
439 3a0y_A Sensor protein; ATP-LID 26.6 94 0.0032 18.4 4.0 39 43-81 67-105 (152)
440 3ts2_A Protein LIN-28 homolog 26.5 34 0.0011 22.3 1.9 17 8-24 14-30 (148)
441 1iq0_A Arginyl-tRNA synthetase 26.1 11 0.00039 29.8 -0.6 70 3-81 68-141 (592)
442 3pm9_A Putative oxidoreductase 25.3 56 0.0019 25.1 3.2 34 2-35 216-251 (476)
443 3eye_A PTS system N-acetylgala 25.2 1.5E+02 0.0053 19.6 5.6 21 14-34 80-100 (168)
444 4a4j_A Pacszia, cation-transpo 24.5 81 0.0028 16.2 4.8 46 27-81 19-64 (69)
445 4eyt_A Telomerase associated p 23.8 77 0.0026 19.7 3.1 20 16-35 47-66 (129)
446 2exu_A Transcription initiatio 23.5 86 0.0029 21.6 3.6 29 13-41 147-175 (200)
447 2ej7_A HCG3 gene; HCG3 protein 23.5 45 0.0015 18.8 1.9 17 62-78 16-32 (82)
448 1nz8_A Transcription antitermi 23.5 1.3E+02 0.0045 18.2 4.9 49 14-78 61-114 (119)
449 2ytv_A Cold shock domain-conta 23.4 25 0.00086 20.5 0.8 12 14-25 17-28 (79)
450 1ik9_C DNA ligase IV; DNA END 23.1 44 0.0015 16.8 1.6 16 63-78 18-33 (37)
451 2ctr_A DNAJ homolog subfamily 22.5 48 0.0016 19.2 1.9 17 62-78 14-30 (88)
452 4hcz_A PHD finger protein 1; p 22.5 66 0.0023 18.0 2.4 14 13-26 29-42 (58)
453 1x65_A UNR protein; cell-free 22.3 32 0.0011 20.6 1.1 10 15-24 18-27 (89)
454 2cug_A Mkiaa0962 protein; DNAJ 21.6 51 0.0017 19.0 1.9 18 61-78 23-40 (88)
455 3hbr_A OXA-48; class D beta-la 21.4 43 0.0015 23.8 1.8 27 68-96 27-53 (265)
456 1wfq_A UNR protein; beta-barre 21.2 50 0.0017 19.7 1.8 10 15-24 28-37 (89)
457 3d36_A Sporulation kinase B; G 21.0 1.7E+02 0.0059 18.7 5.1 40 42-81 142-181 (244)
458 1b64_A Elongation factor 1-bet 20.9 1.5E+02 0.005 17.8 5.0 58 24-85 20-83 (91)
459 2x02_A Beta-lactamase OXA-10; 20.8 53 0.0018 22.5 2.1 27 68-96 6-32 (248)
No 1
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.88 E-value=1e-21 Score=130.26 Aligned_cols=95 Identities=16% Similarity=0.209 Sum_probs=84.5
Q ss_pred ceEEEEEeeCC--CCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecCC------CCceEEEEcCCCCCCChHHHH
Q psy11608 2 VMYFVDIKKQS--SASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKS------LATTCVWVDGVAGKCGTGEHN 73 (99)
Q Consensus 2 ~I~~v~ik~~~--~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k~------~~~~~lfVg~l~~~~s~~~L~ 73 (99)
+|.+|.|.++. +++|||||+|.+.++|++|++.|||..+.++++++.++.+ .+..+|||+|||+++++++|+
T Consensus 26 ~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~ 105 (166)
T 3md3_A 26 PIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQQSSSDDTFNLFVGDLNVNVDDETLR 105 (166)
T ss_dssp CEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCCCCCCTTCEEEEEESCCTTCCHHHHH
T ss_pred CeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCCCCCCCCCceEEECCCCCCCCHHHHH
Confidence 58899998775 6899999999999999999999999999999999998753 346889999999999999999
Q ss_pred hhhcCCCceeeeeEEEEcCCCCCC
Q psy11608 74 RVNLGYGKSLATTCVWVDGVAGKC 97 (99)
Q Consensus 74 ~~F~~fG~i~~~~~v~~d~~~g~~ 97 (99)
++|++||.|..+ .+..|+.+|++
T Consensus 106 ~~f~~~G~i~~~-~i~~~~~~~~~ 128 (166)
T 3md3_A 106 NAFKDFPSYLSG-HVMWDMQTGSS 128 (166)
T ss_dssp HHHTTSTTEEEE-EEEECTTTCCE
T ss_pred HHHhccCCeeEE-EEEecCCCCCc
Confidence 999999999876 56588877764
No 2
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.87 E-value=1.6e-21 Score=129.46 Aligned_cols=95 Identities=17% Similarity=0.370 Sum_probs=84.3
Q ss_pred ceEEEEEeeCC---CCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecCCC----CceEEEEcCCCCCCChHHHHh
Q psy11608 2 VMYFVDIKKQS---SASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKSL----ATTCVWVDGVAGKCGTGEHNR 74 (99)
Q Consensus 2 ~I~~v~ik~~~---~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k~~----~~~~lfVg~l~~~~s~~~L~~ 74 (99)
+|.+|.+.++. +++|||||+|.++++|++|++.|||..+.++++++.++++. +..+|||+|||+++++++|++
T Consensus 28 ~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~ 107 (167)
T 1fxl_A 28 EIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQ 107 (167)
T ss_dssp CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCCGGGTTCEEEEESCCTTCCHHHHHH
T ss_pred CeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCCCcccCCCCcEEECCCCCcCCHHHHHH
Confidence 58899998875 67899999999999999999999999999999999998754 357899999999999999999
Q ss_pred hhcCCCceeeeeEEEEcCCCCCC
Q psy11608 75 VNLGYGKSLATTCVWVDGVAGKC 97 (99)
Q Consensus 75 ~F~~fG~i~~~~~v~~d~~~g~~ 97 (99)
+|++||+|..+ .+..|+.+|++
T Consensus 108 ~f~~~G~i~~~-~i~~~~~~g~~ 129 (167)
T 1fxl_A 108 LFSQYGRIITS-RILVDQVTGVS 129 (167)
T ss_dssp HHGGGSCEEEE-EEEECTTTCCE
T ss_pred HHHhcCCEeEE-EEEecCCCCCc
Confidence 99999999876 55588877653
No 3
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.87 E-value=1.6e-21 Score=130.00 Aligned_cols=94 Identities=18% Similarity=0.362 Sum_probs=83.6
Q ss_pred ceEEEEEeeCC---CCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecCC----CCceEEEEcCCCCCCChHHHHh
Q psy11608 2 VMYFVDIKKQS---SASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKS----LATTCVWVDGVAGKCGTGEHNR 74 (99)
Q Consensus 2 ~I~~v~ik~~~---~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k~----~~~~~lfVg~l~~~~s~~~L~~ 74 (99)
+|.+|.+.++. +++|||||+|.++++|++|++.|+|..+++++|+|.++++ .+..+|||+|||+++++++|++
T Consensus 29 ~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~ 108 (168)
T 1b7f_A 29 PINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARPGGESIKDTNLYVTNLPRTITDDQLDT 108 (168)
T ss_dssp CEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCSSTTTTCEEEEESCCTTCCHHHHHH
T ss_pred CeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecCCCcccCCCCCEEEeCCCCCCCHHHHHH
Confidence 58889988764 5899999999999999999999999999999999999764 3568999999999999999999
Q ss_pred hhcCCCceeeeeEEEEcCCCCC
Q psy11608 75 VNLGYGKSLATTCVWVDGVAGK 96 (99)
Q Consensus 75 ~F~~fG~i~~~~~v~~d~~~g~ 96 (99)
+|++||.|..+ .+..|+.+|+
T Consensus 109 ~f~~~G~i~~~-~i~~~~~~~~ 129 (168)
T 1b7f_A 109 IFGKYGSIVQK-NILRDKLTGR 129 (168)
T ss_dssp HHTSSSCEEEE-EEEECTTTCC
T ss_pred hhhcCCcEEEE-EEEEcCCCCC
Confidence 99999999876 5557876665
No 4
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.85 E-value=1e-20 Score=129.06 Aligned_cols=94 Identities=20% Similarity=0.211 Sum_probs=82.0
Q ss_pred ceEEEEEeeCC---CCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecCCC----------CceEEEEcCCCCCCC
Q psy11608 2 VMYFVDIKKQS---SASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKSL----------ATTCVWVDGVAGKCG 68 (99)
Q Consensus 2 ~I~~v~ik~~~---~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k~~----------~~~~lfVg~l~~~~s 68 (99)
+|.+|.|.++. .++|||||+|.+.++|++|++. +|..+.+++|++.++.+. +.++|||+|||.+++
T Consensus 39 ~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t 117 (196)
T 1l3k_A 39 TLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTE 117 (196)
T ss_dssp CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEEECCC-----------CCSEEEEECCTTTCC
T ss_pred CEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeeecccCcccccccccCCCcceEEEeCCCCCCC
Confidence 58899999874 6899999999999999999987 999999999999887542 347899999999999
Q ss_pred hHHHHhhhcCCCceeeeeEEEEcCCCCCC
Q psy11608 69 TGEHNRVNLGYGKSLATTCVWVDGVAGKC 97 (99)
Q Consensus 69 ~~~L~~~F~~fG~i~~~~~v~~d~~~g~~ 97 (99)
+++|+++|++||.|..+ .+..|+.+|++
T Consensus 118 ~~~l~~~F~~~G~i~~v-~i~~~~~~g~~ 145 (196)
T 1l3k_A 118 EHHLRDYFEQYGKIEVI-EIMTDRGSGKK 145 (196)
T ss_dssp HHHHHHHHTTTSCEEEE-EEEECTTTCCE
T ss_pred HHHHHHHHhcCCCeEEE-EEeecCCCCCc
Confidence 99999999999999876 55588877764
No 5
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.85 E-value=5.2e-21 Score=134.29 Aligned_cols=92 Identities=12% Similarity=0.207 Sum_probs=81.9
Q ss_pred ceEEEEEeeCC---CCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecCCC------CceEEEEcCCCCCCChHHH
Q psy11608 2 VMYFVDIKKQS---SASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKSL------ATTCVWVDGVAGKCGTGEH 72 (99)
Q Consensus 2 ~I~~v~ik~~~---~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k~~------~~~~lfVg~l~~~~s~~~L 72 (99)
+|++|.|.+|. +++|||||+|.+.++|++|++.+||..+.++.+++.++... ..++|||+|||.++++++|
T Consensus 41 ~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l 120 (213)
T 4f02_A 41 PILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKAL 120 (213)
T ss_dssp CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCTHHHHHCTTEEEEESCCTTCCHHHH
T ss_pred CEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccccccccccccccccceECCcccccHHHHH
Confidence 68999999874 78999999999999999999999999999999999987653 3578999999999999999
Q ss_pred HhhhcCCCceeeeeEEEEcCCC
Q psy11608 73 NRVNLGYGKSLATTCVWVDGVA 94 (99)
Q Consensus 73 ~~~F~~fG~i~~~~~v~~d~~~ 94 (99)
+++|++||.|.++ .+..|+.+
T Consensus 121 ~~~F~~~G~i~~~-~i~~d~~~ 141 (213)
T 4f02_A 121 YDTFSAFGNILSC-KVVCDENG 141 (213)
T ss_dssp HHHHGGGSCEEEE-EEEEETTE
T ss_pred HHHHhhcCCeEEE-EeeccCCC
Confidence 9999999999876 55577643
No 6
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.85 E-value=1e-20 Score=130.86 Aligned_cols=95 Identities=21% Similarity=0.308 Sum_probs=82.3
Q ss_pred ceEEEEEeeCC---CCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecCCC---------------CceEEEEcCC
Q psy11608 2 VMYFVDIKKQS---SASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKSL---------------ATTCVWVDGV 63 (99)
Q Consensus 2 ~I~~v~ik~~~---~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k~~---------------~~~~lfVg~l 63 (99)
+|.+|.|.++. .++|||||+|.+.++|++|++.|||..+++++|+|.++... +.++|||+||
T Consensus 54 ~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl 133 (216)
T 2qfj_A 54 PIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASV 133 (216)
T ss_dssp CEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCSCCGGGHHHHHHHHHHHTTSCEEEEECC
T ss_pred CEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCCCccccchhhhhhhcccCCCcEEEEeCC
Confidence 58899998764 78999999999999999999999999999999999876543 3479999999
Q ss_pred CCCCChHHHHhhhcCCCceeeeeEEEEcCCCCCC
Q psy11608 64 AGKCGTGEHNRVNLGYGKSLATTCVWVDGVAGKC 97 (99)
Q Consensus 64 ~~~~s~~~L~~~F~~fG~i~~~~~v~~d~~~g~~ 97 (99)
|.++++++|+++|++||.|..+ .+..|+.+|++
T Consensus 134 p~~~t~~~l~~~f~~~G~v~~v-~i~~~~~~g~~ 166 (216)
T 2qfj_A 134 HQDLSDDDIKSVFEAFGKIKSA-TLARDPTTGKH 166 (216)
T ss_dssp CTTCCHHHHHHHHTTSSCEEEE-EEEECTTTCCE
T ss_pred CCcCCHHHHHHHHhccCCeeEE-EEEecCCCCCc
Confidence 9999999999999999999876 56688777764
No 7
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.84 E-value=2.2e-20 Score=125.14 Aligned_cols=91 Identities=16% Similarity=0.293 Sum_probs=78.6
Q ss_pred ceEEEEEeeCCCCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecCCC----CceEEEEcCCCCCCChHHHHhhhc
Q psy11608 2 VMYFVDIKKQSSASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKSL----ATTCVWVDGVAGKCGTGEHNRVNL 77 (99)
Q Consensus 2 ~I~~v~ik~~~~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k~~----~~~~lfVg~l~~~~s~~~L~~~F~ 77 (99)
+|.++.+. .++|||||+|.++++|++|+ +|||..+.++++++.+++.. +.++|||+|||+++++++|+++|+
T Consensus 41 ~v~~~~~~---~~~g~afV~f~~~~~A~~A~-~~~~~~~~g~~i~v~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~ 116 (172)
T 2g4b_A 41 PVLAVQIN---QDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSLKIRRPHDYQPLPGAHKLFIGGLPNYLNDDQVKELLT 116 (172)
T ss_dssp SEEEEEEE---TTTTEEEEEESSHHHHHHHG-GGTTCEETTEECEEECCSSCCCCTTTTCEEEECCCTTCCHHHHHHHHH
T ss_pred ceeeeEec---CCCCEEEEEeCCHHHHHHHH-HhCCcEecCceeeecCCcccCCCCCCCEEEEEcCCCcCCHHHHHHHHH
Confidence 56666665 46999999999999999999 89999999999999987643 357899999999999999999999
Q ss_pred CCCceeeeeEEEEcCCCCCC
Q psy11608 78 GYGKSLATTCVWVDGVAGKC 97 (99)
Q Consensus 78 ~fG~i~~~~~v~~d~~~g~~ 97 (99)
+||+|..+ .+..|+.+|++
T Consensus 117 ~~G~v~~v-~i~~~~~~g~~ 135 (172)
T 2g4b_A 117 SFGPLKAF-NLVKDSATGLS 135 (172)
T ss_dssp TTSCEEEE-EEEECTTTCSE
T ss_pred hcCCceEE-EEEecCCCCCc
Confidence 99999776 55588777753
No 8
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.84 E-value=2.5e-20 Score=127.33 Aligned_cols=91 Identities=16% Similarity=0.281 Sum_probs=77.8
Q ss_pred ceEEEEEeeCCCCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecCC------------------------CCceE
Q psy11608 2 VMYFVDIKKQSSASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKS------------------------LATTC 57 (99)
Q Consensus 2 ~I~~v~ik~~~~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k~------------------------~~~~~ 57 (99)
+|.++.+. +++|||||+|.+.++|++|+ .|||..+.+++|+|.+++. .+.++
T Consensus 41 ~v~~~~~~---~~~g~afV~F~~~~~A~~Al-~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (198)
T 2yh0_A 41 PVLAVQIN---QDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHK 116 (198)
T ss_dssp SEEEEEEE---TTTTEEEEEESCSHHHHHHG-GGTTEEETTEEEEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCE
T ss_pred ceEEeEec---CCCCEEEEEeCCHHHHHHHH-HhcCCEEcCceEEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCE
Confidence 45666654 57999999999999999999 8999999999999988643 23578
Q ss_pred EEEcCCCCCCChHHHHhhhcCCCceeeeeEEEEcCCCCCC
Q psy11608 58 VWVDGVAGKCGTGEHNRVNLGYGKSLATTCVWVDGVAGKC 97 (99)
Q Consensus 58 lfVg~l~~~~s~~~L~~~F~~fG~i~~~~~v~~d~~~g~~ 97 (99)
|||+|||.++++++|+++|++||.|..+ .+..|+.+|++
T Consensus 117 l~v~nl~~~~~~~~l~~~f~~~G~v~~~-~~~~~~~~~~~ 155 (198)
T 2yh0_A 117 LFIGGLPNYLNDDQVKELLTSFGPLKAF-NLVKDSATGLS 155 (198)
T ss_dssp EEEECCCTTCCHHHHHHHHHTBSCEEEE-EEEECTTTCSE
T ss_pred EEEeCCCCCCCHHHHHHHHHHcCCccEE-EEeecCCCCCc
Confidence 9999999999999999999999999776 56688777753
No 9
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.83 E-value=2.4e-20 Score=131.57 Aligned_cols=79 Identities=14% Similarity=0.112 Sum_probs=70.3
Q ss_pred ceEEEEEeeCCCCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecCC-----------------------------
Q psy11608 2 VMYFVDIKKQSSASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKS----------------------------- 52 (99)
Q Consensus 2 ~I~~v~ik~~~~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k~----------------------------- 52 (99)
.|.+|.|.++ ++|||||+|.+.++|++|++.|||..+.|++|+|.+++.
T Consensus 31 ~v~~v~i~~~--~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~ 108 (205)
T 3tyt_A 31 NVEKVKFMKS--KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQPAIMPGQSYGLEDGSCSYKDFSESRNNRF 108 (205)
T ss_dssp CEEEEEECTT--STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCSCCCCCSCCBCTTSCBSEEECTTCTTCSC
T ss_pred CeEEEEEecC--CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccCCccCCCcccccccCCccccccCCCccccc
Confidence 5788888764 589999999999999999999999999999999998642
Q ss_pred ------------CCceEEEEcCCCCCCChHHHHhhhcCCCce
Q psy11608 53 ------------LATTCVWVDGVAGKCGTGEHNRVNLGYGKS 82 (99)
Q Consensus 53 ------------~~~~~lfVg~l~~~~s~~~L~~~F~~fG~i 82 (99)
.|+++|||+|||+++++++|+++|++||.|
T Consensus 109 ~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v 150 (205)
T 3tyt_A 109 STPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVK 150 (205)
T ss_dssp SSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCC
T ss_pred cCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCc
Confidence 123579999999999999999999999998
No 10
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.82 E-value=5.8e-20 Score=132.51 Aligned_cols=50 Identities=20% Similarity=0.333 Sum_probs=46.9
Q ss_pred ceEEEEEeeCCCCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecC
Q psy11608 2 VMYFVDIKKQSSASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGK 51 (99)
Q Consensus 2 ~I~~v~ik~~~~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k 51 (99)
.|.+|.|.++++++|||||+|.+.++|++|++.|||..+.+++|+|.|++
T Consensus 39 ~i~~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 88 (282)
T 3pgw_A 39 QILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYAK 88 (282)
T ss_pred CeEEEEEcCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEEec
Confidence 58899999989999999999999999999999999999999999998764
No 11
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.82 E-value=2.4e-20 Score=124.42 Aligned_cols=93 Identities=14% Similarity=0.235 Sum_probs=79.8
Q ss_pred ceEEEEEeeCC---CCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecCCC----CceEEEEcCCCCCCChHHHHh
Q psy11608 2 VMYFVDIKKQS---SASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKSL----ATTCVWVDGVAGKCGTGEHNR 74 (99)
Q Consensus 2 ~I~~v~ik~~~---~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k~~----~~~~lfVg~l~~~~s~~~L~~ 74 (99)
+|.+|.|.++. .++|||||+|.+.++|++|++. +..+.|+++++.++.+. +..+|||+|||+++++++|++
T Consensus 29 ~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~ 106 (167)
T 2cjk_A 29 TVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRAIPRDEQDKTGKIFVGGIGPDVRPKEFEE 106 (167)
T ss_dssp CEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEECCCHHHHHHCEEEEEEEECTTCCHHHHHH
T ss_pred CEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEcccccccchhhccCCCeEEECCCCCCCCHHHHHH
Confidence 58899998873 7999999999999999999995 57888899888887643 467899999999999999999
Q ss_pred hhcCCCceeeeeEEEEcCCCCCC
Q psy11608 75 VNLGYGKSLATTCVWVDGVAGKC 97 (99)
Q Consensus 75 ~F~~fG~i~~~~~v~~d~~~g~~ 97 (99)
+|++||+|..+ .+..|+.+|++
T Consensus 107 ~F~~~G~i~~~-~i~~~~~~g~~ 128 (167)
T 2cjk_A 107 FFSQWGTIIDA-QLMLDKDTGQS 128 (167)
T ss_dssp HHHTTSCCSEE-ECCCSSSSSTT
T ss_pred HHHhCccEEEE-EEEEcCCCCcc
Confidence 99999999775 55578777754
No 12
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.81 E-value=6.3e-20 Score=122.74 Aligned_cols=93 Identities=13% Similarity=0.240 Sum_probs=77.8
Q ss_pred ceEEEEEeeCC-----CCCCeEEEEeCCHHHHHHHHHhhCCeEeC---CeEEEEeecCCC-----CceEEEEcCCCCCCC
Q psy11608 2 VMYFVDIKKQS-----SASAFAFVQYTDIASVVRAMRAMDGEYVG---HNRVNLGYGKSL-----ATTCVWVDGVAGKCG 68 (99)
Q Consensus 2 ~I~~v~ik~~~-----~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~---~~~i~v~~~k~~-----~~~~lfVg~l~~~~s 68 (99)
+|.+|.|.++. +++|||||+|.+.++|++|++.|+|..+. ++++.+.++++. +.++|||+|||++++
T Consensus 29 ~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t 108 (175)
T 3nmr_A 29 AVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQMKPADSEKNNAVEDRKLFIGMISKKCT 108 (175)
T ss_dssp CEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEEEECGGGCCSCGGGSEEEEESCCTTCC
T ss_pred CEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceEEccccccccccCCCCeEEEcCCCCcCC
Confidence 68899998885 57899999999999999999999998765 466777765432 468899999999999
Q ss_pred hHHHHhhhcCCCceeeeeEEEEcCCCCC
Q psy11608 69 TGEHNRVNLGYGKSLATTCVWVDGVAGK 96 (99)
Q Consensus 69 ~~~L~~~F~~fG~i~~~~~v~~d~~~g~ 96 (99)
+++|+++|++||+|..+ .+..|+ +|+
T Consensus 109 ~~~l~~~F~~~G~i~~v-~~~~~~-~g~ 134 (175)
T 3nmr_A 109 ENDIRVMFSSFGQIEEC-RILRGP-DGL 134 (175)
T ss_dssp HHHHHHHHGGGSCEEEE-EEEECT-TSC
T ss_pred HHHHHHHHHhCCCEEEE-EEEECC-CCC
Confidence 99999999999999775 555775 354
No 13
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.81 E-value=3.3e-19 Score=128.63 Aligned_cols=89 Identities=9% Similarity=0.108 Sum_probs=78.7
Q ss_pred eEEEEEeeCCCCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecCCCCceEEEEcCCCCCCChHHHHhhhcCCCce
Q psy11608 3 MYFVDIKKQSSASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKSLATTCVWVDGVAGKCGTGEHNRVNLGYGKS 82 (99)
Q Consensus 3 I~~v~ik~~~~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k~~~~~~lfVg~l~~~~s~~~L~~~F~~fG~i 82 (99)
|.+|.+ ++++|||||+|.++++|++|++.|||..+.++++++.+.. +..+|||+|||+++++++|+++|++||+|
T Consensus 48 i~~~~~---~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~--~~~~l~v~nlp~~~t~~~l~~~f~~~G~i 122 (284)
T 3smz_A 48 LKYCFV---DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQP--TDALLCVANLPPSLTQQQFEELVRPFGSL 122 (284)
T ss_dssp EEEEEE---ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC--CSCEEEEESCCTTCCHHHHHHHHGGGSCE
T ss_pred CEEEEE---ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEecC--CCCEEEEcCCCCcCCHHHHHHHHHhcCCe
Confidence 566666 5789999999999999999999999999999999999854 45799999999999999999999999999
Q ss_pred eeeeEEEEcCCCCCC
Q psy11608 83 LATTCVWVDGVAGKC 97 (99)
Q Consensus 83 ~~~~~v~~d~~~g~~ 97 (99)
..+ .+..|+.+|++
T Consensus 123 ~~~-~i~~~~~~g~~ 136 (284)
T 3smz_A 123 ERC-FLVYSERTGQS 136 (284)
T ss_dssp EEE-EEEECTTTCCE
T ss_pred eEE-EEEeeCCCCcc
Confidence 775 55588877754
No 14
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.80 E-value=3e-19 Score=128.79 Aligned_cols=89 Identities=15% Similarity=0.188 Sum_probs=78.7
Q ss_pred ceEEEEEeeCCCCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecCCCCceEEEEcCCCCCCChHHHHhhhcCCCc
Q psy11608 2 VMYFVDIKKQSSASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKSLATTCVWVDGVAGKCGTGEHNRVNLGYGK 81 (99)
Q Consensus 2 ~I~~v~ik~~~~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k~~~~~~lfVg~l~~~~s~~~L~~~F~~fG~ 81 (99)
.|.+|.|.+ ++|||||+|.+.++|++|++.|||..+.+++|+|.++. +..+|||+|||+++++++|+++|++||+
T Consensus 48 ~i~~v~i~~---~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~--~~~~l~v~nl~~~~t~~~l~~~F~~~G~ 122 (261)
T 3sde_A 48 EPSEVFINR---DRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFAT--HGAALTVKNLSPVVSNELLEQAFSQFGP 122 (261)
T ss_dssp CCSEEEEET---TTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECC--CSSEEEEESCCTTCCHHHHHHHHGGGSC
T ss_pred CEEEEEEeC---CCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeecc--cCCcccccCCCCCCCHHHHHHHHHhcCC
Confidence 477888864 58999999999999999999999999999999999976 4579999999999999999999999999
Q ss_pred eeeeeEEEEcCCCCCC
Q psy11608 82 SLATTCVWVDGVAGKC 97 (99)
Q Consensus 82 i~~~~~v~~d~~~g~~ 97 (99)
|..+ .+..|. +|++
T Consensus 123 i~~v-~i~~~~-~g~~ 136 (261)
T 3sde_A 123 VEKA-VVVVDD-RGRA 136 (261)
T ss_dssp EEEE-EEEEET-TSCE
T ss_pred eEEE-EeeeCC-CCCc
Confidence 9876 555784 6654
No 15
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.79 E-value=7.6e-19 Score=118.30 Aligned_cols=72 Identities=15% Similarity=0.155 Sum_probs=65.9
Q ss_pred CCCCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecCCC------CceEEEEcCCCCCCChHHHHhhhcCCCcee
Q psy11608 11 QSSASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKSL------ATTCVWVDGVAGKCGTGEHNRVNLGYGKSL 83 (99)
Q Consensus 11 ~~~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k~~------~~~~lfVg~l~~~~s~~~L~~~F~~fG~i~ 83 (99)
.+.++|||||+|.+.++|++|+ +|||..+.+++|+|.++++. +.++|||+|||.++++++|+++|++||.|.
T Consensus 50 ~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~v~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~ 127 (175)
T 1fje_B 50 TGTNRKFGYVDFESAEDLEKAL-ELTGLKVFGNEIKLEKPKGRDSKKVRAARTLLAKNLSFNITEDELKEVFEDALEIR 127 (175)
T ss_dssp EETTTTEEEEEESSHHHHHHHH-HGGGEEETTEEEEEECCCCSSCSTTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEE
T ss_pred CCccccEEEEEECCHHHHHHHH-hcCCCEeCCeEEEEecCCCccccccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEE
Confidence 3589999999999999999999 59999999999999987643 457999999999999999999999999994
No 16
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.79 E-value=8.1e-19 Score=126.59 Aligned_cols=93 Identities=14% Similarity=0.189 Sum_probs=80.8
Q ss_pred ceEEEEEeeCC---CCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecCC-------CCceEEEEcCCCCCC-ChH
Q psy11608 2 VMYFVDIKKQS---SASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKS-------LATTCVWVDGVAGKC-GTG 70 (99)
Q Consensus 2 ~I~~v~ik~~~---~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k~-------~~~~~lfVg~l~~~~-s~~ 70 (99)
.|.+|.+.++. .++|||||+|.+.++|.+|++.|||..+++++|+|.++.+ .+.++|||+|||+++ +++
T Consensus 121 ~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~~~~~~~~~~~~~~l~v~nlp~~~~~~~ 200 (284)
T 3smz_A 121 SLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTDAGQLTPALLHSRCLCVDRLPPGFNDVD 200 (284)
T ss_dssp CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCGGGCCTTTTSCSEEEEECCCTTCCCHH
T ss_pred CeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCCCCcccCCccEEEEecCCcccCCHH
Confidence 57888888764 6899999999999999999999999999999999998764 246789999999996 999
Q ss_pred HHHhhhcCCCceeeeeEEEEcCCCCC
Q psy11608 71 EHNRVNLGYGKSLATTCVWVDGVAGK 96 (99)
Q Consensus 71 ~L~~~F~~fG~i~~~~~v~~d~~~g~ 96 (99)
+|+++|++||.|..+ .+..|+ +|+
T Consensus 201 ~l~~~f~~~G~i~~v-~i~~~~-~g~ 224 (284)
T 3smz_A 201 ALCRALSAVHSPTFC-QLACGQ-DGQ 224 (284)
T ss_dssp HHHHHTCSSSCCSEE-EEEECS-SCC
T ss_pred HHHHHhhCCCCeEEE-EEEECC-CCC
Confidence 999999999999876 455666 454
No 17
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.77 E-value=6.9e-19 Score=127.39 Aligned_cols=91 Identities=9% Similarity=0.107 Sum_probs=75.6
Q ss_pred ceEEEEEeeCC--CCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecCCC-----------CceEEEEcCCCCC-C
Q psy11608 2 VMYFVDIKKQS--SASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKSL-----------ATTCVWVDGVAGK-C 67 (99)
Q Consensus 2 ~I~~v~ik~~~--~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k~~-----------~~~~lfVg~l~~~-~ 67 (99)
.|.+|.|.++. .++|||||+|.+.++|++|++.|||..+.+++|+|.++.+. +.++|||+|||++ +
T Consensus 144 ~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~l~v~nlp~~~~ 223 (292)
T 2ghp_A 144 VALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSNPLEKSKRTDSATLEGREIMIRNLSTELL 223 (292)
T ss_dssp CCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCC---------CCTTTEEEEEEECTTTC
T ss_pred CeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCcccccccccCCCCceEEEECCCcccC
Confidence 57788887765 78999999999999999999999999999999999987542 3478999999999 9
Q ss_pred ChHHHHhhhcCCCceeeeeEEEEcCC
Q psy11608 68 GTGEHNRVNLGYGKSLATTCVWVDGV 93 (99)
Q Consensus 68 s~~~L~~~F~~fG~i~~~~~v~~d~~ 93 (99)
++++|+++|++||.|..+ .+..|..
T Consensus 224 t~~~l~~~F~~~G~v~~v-~i~~~~~ 248 (292)
T 2ghp_A 224 DENLLRESFEGFGSIEKI-NIPAGQK 248 (292)
T ss_dssp CHHHHHHHHGGGSCEEEE-ECCSCCC
T ss_pred CHHHHHHHHhccCCeeEE-EEEecCC
Confidence 999999999999999765 4445654
No 18
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.77 E-value=2.6e-18 Score=121.63 Aligned_cols=82 Identities=13% Similarity=0.105 Sum_probs=73.5
Q ss_pred ceEEEEEeeCCCCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecCCC----------------------------
Q psy11608 2 VMYFVDIKKQSSASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKSL---------------------------- 53 (99)
Q Consensus 2 ~I~~v~ik~~~~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k~~---------------------------- 53 (99)
.|.+|.|.++. +|||||+|.+.++|++|++.|||..+.+++|+|.+++..
T Consensus 61 ~i~~v~i~~~~--~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (229)
T 2adc_A 61 DVQRVKILFNK--KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKK 138 (229)
T ss_dssp CEEEEEECCTT--SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECCSCCCCCCCCSSSSTTTTEEECTTCSSCCCCS
T ss_pred CeEEEEEEECC--CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecCccccCccccccccccccccccCcccccCC
Confidence 58899998875 899999999999999999999999999999999876532
Q ss_pred -----------CceEEEEcCCCCCCChHHHHhhhcCCC-ceeee
Q psy11608 54 -----------ATTCVWVDGVAGKCGTGEHNRVNLGYG-KSLAT 85 (99)
Q Consensus 54 -----------~~~~lfVg~l~~~~s~~~L~~~F~~fG-~i~~~ 85 (99)
++++|||+|||+++++++|+++|++|| +|..+
T Consensus 139 ~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v 182 (229)
T 2adc_A 139 PGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGF 182 (229)
T ss_dssp TTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEE
T ss_pred ccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEE
Confidence 257899999999999999999999999 88654
No 19
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.76 E-value=1.4e-18 Score=119.33 Aligned_cols=82 Identities=13% Similarity=0.105 Sum_probs=72.3
Q ss_pred ceEEEEEeeCCCCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecCCC----------------------------
Q psy11608 2 VMYFVDIKKQSSASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKSL---------------------------- 53 (99)
Q Consensus 2 ~I~~v~ik~~~~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k~~---------------------------- 53 (99)
+|.+|.|.++. +|||||+|.+.++|++|++.|||..+.+++|+|.+++..
T Consensus 30 ~i~~v~i~~~~--~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 107 (198)
T 1qm9_A 30 DVQRVKILFNK--KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKK 107 (198)
T ss_dssp CCSEEECSTTC--SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCCCSCCCSSSSSSSSSCEEESSCCCTTSSSS
T ss_pred CEEEEEEEeCC--CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecCCCcCCCCcCCccccccccccCCchhhccC
Confidence 46778887765 899999999999999999999999999999999876521
Q ss_pred -----------CceEEEEcCCCCCCChHHHHhhhcCCC-ceeee
Q psy11608 54 -----------ATTCVWVDGVAGKCGTGEHNRVNLGYG-KSLAT 85 (99)
Q Consensus 54 -----------~~~~lfVg~l~~~~s~~~L~~~F~~fG-~i~~~ 85 (99)
|+++|||+|||.++++++|+++|++|| +|..+
T Consensus 108 ~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v 151 (198)
T 1qm9_A 108 PGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGF 151 (198)
T ss_dssp CCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEE
T ss_pred ccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEE
Confidence 367899999999999999999999999 88654
No 20
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.75 E-value=4.1e-18 Score=123.34 Aligned_cols=86 Identities=12% Similarity=0.150 Sum_probs=74.9
Q ss_pred ceEEEEEeeCC-CCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecCCCCceEEEEcCCCCCCChHHHHhhhcCCC
Q psy11608 2 VMYFVDIKKQS-SASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKSLATTCVWVDGVAGKCGTGEHNRVNLGYG 80 (99)
Q Consensus 2 ~I~~v~ik~~~-~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k~~~~~~lfVg~l~~~~s~~~L~~~F~~fG 80 (99)
+|.+|.|.++. .++|||||+|.+.++|++|++ |||..+++++|++.++ +..+|||+|||+++++++|+++|++||
T Consensus 67 ~i~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~-~~~~~~~g~~i~v~~~---~~~~l~v~nlp~~~t~~~l~~~f~~~G 142 (292)
T 2ghp_A 67 PIIHVDVADSLKKNFRFARIEFARYDGALAAIT-KTHKVVGQNEIIVSHL---TECTLWMTNFPPSYTQRNIRDLLQDIN 142 (292)
T ss_dssp CEEEEEEEECTTSSSEEEEEEESSHHHHHHHHT-TTTCEETTEECEEEEC---CSCEEEEECCCTTCCHHHHHHHHHHTT
T ss_pred CeEEEEEEECCCCCcEEEEEEECCHHHHHHHHH-hCCcEeCCcEEEEEEC---CCCEEEEECCCCCCCHHHHHHHHHHhC
Confidence 68899999875 569999999999999999995 9999999999999986 368999999999999999999999999
Q ss_pred -ceeeeeEEEEcC
Q psy11608 81 -KSLATTCVWVDG 92 (99)
Q Consensus 81 -~i~~~~~v~~d~ 92 (99)
+|..+ .+..|+
T Consensus 143 ~~i~~v-~i~~~~ 154 (292)
T 2ghp_A 143 VVALSI-RLPSLR 154 (292)
T ss_dssp CCCCEE-ECC---
T ss_pred CCeEEE-EEEeCC
Confidence 99765 443555
No 21
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.73 E-value=4.3e-18 Score=114.18 Aligned_cols=91 Identities=11% Similarity=0.046 Sum_probs=66.8
Q ss_pred EEEeeCC-CCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEE-------ee----------cCCCCceEEEEcCCCCCC
Q psy11608 6 VDIKKQS-SASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNL-------GY----------GKSLATTCVWVDGVAGKC 67 (99)
Q Consensus 6 v~ik~~~-~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v-------~~----------~k~~~~~~lfVg~l~~~~ 67 (99)
+-|..++ +++|||||+|.+.++|++|++.+++.........+ .. ....+..+|||+|||+++
T Consensus 3 ~kl~ln~~~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~ 82 (158)
T 2kn4_A 3 YKLILNGKTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMDVEGMTSLKVDNLTYRT 82 (158)
T ss_dssp EEEEEECSSCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCCCSSCCCCCCBCCEEEEESCCTTC
T ss_pred EEEEecCccccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccccccccccCCCCCCEEEEeCCCCCC
Confidence 3444454 79999999999999999999887753221111111 11 011346899999999999
Q ss_pred ChHHHHhhhcCCCceeeeeEEEEcCCCCCC
Q psy11608 68 GTGEHNRVNLGYGKSLATTCVWVDGVAGKC 97 (99)
Q Consensus 68 s~~~L~~~F~~fG~i~~~~~v~~d~~~g~~ 97 (99)
++++|+++|++||+|..+ .+..|+.+|++
T Consensus 83 ~~~~l~~~F~~~G~v~~~-~i~~~~~~g~~ 111 (158)
T 2kn4_A 83 SPDTLRRVFEKYGRVGDV-YIPRDRYTKES 111 (158)
T ss_dssp CHHHHHHHHHHHSCEEEE-ECCCCSSCTTS
T ss_pred CHHHHHHHHHhcCCeEEE-EEeecCCCCcc
Confidence 999999999999999775 55578777764
No 22
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.72 E-value=6.3e-18 Score=109.09 Aligned_cols=70 Identities=17% Similarity=0.277 Sum_probs=47.1
Q ss_pred ceEEEEEeeCC-CCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecCCC------------CceEEEEcCCCCCCC
Q psy11608 2 VMYFVDIKKQS-SASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKSL------------ATTCVWVDGVAGKCG 68 (99)
Q Consensus 2 ~I~~v~ik~~~-~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k~~------------~~~~lfVg~l~~~~s 68 (99)
.|.+|.|.++. +++|||||+|.+.++|++|+++|||..++|++|+|.++++. +.++|||+|||+++|
T Consensus 31 ~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~~~~~~~~~~~~~~~~~lyv~Nl~~~~T 110 (115)
T 4f25_A 31 NILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGPGST 110 (115)
T ss_dssp CEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCCCC-------------------------
T ss_pred CEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCccccccccccccCCCCceEeCCCCCCcc
Confidence 58899988875 68999999999999999999999999999999999987643 246799999999999
Q ss_pred hHH
Q psy11608 69 TGE 71 (99)
Q Consensus 69 ~~~ 71 (99)
++.
T Consensus 111 ~~a 113 (115)
T 4f25_A 111 RAA 113 (115)
T ss_dssp ---
T ss_pred ccc
Confidence 864
No 23
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.61 E-value=1.7e-16 Score=101.49 Aligned_cols=77 Identities=16% Similarity=0.180 Sum_probs=70.2
Q ss_pred ceEEEEEeeCCCCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecCCCCceEEEEcCCCCCCChHHHHhhhcCCCc
Q psy11608 2 VMYFVDIKKQSSASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKSLATTCVWVDGVAGKCGTGEHNRVNLGYGK 81 (99)
Q Consensus 2 ~I~~v~ik~~~~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k~~~~~~lfVg~l~~~~s~~~L~~~F~~fG~ 81 (99)
+|.+|.|.+++.++|||||+|.+.++|++|++.|||..+.|++|+|.|+++.+.. ++++...++++|+++|++||-
T Consensus 34 ~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~----~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 34 PIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYNANRAF----QKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp CEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECCHHHHT----TTSCHHHHHHHHHHHHHHHCC
T ss_pred CeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCChhh----hhhhHhHhHHHHHHHHHHhCC
Confidence 6889999999999999999999999999999999999999999999998765433 788999999999999999995
Q ss_pred e
Q psy11608 82 S 82 (99)
Q Consensus 82 i 82 (99)
-
T Consensus 110 ~ 110 (115)
T 3lqv_A 110 N 110 (115)
T ss_dssp C
T ss_pred C
Confidence 3
No 24
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.60 E-value=8.7e-16 Score=102.50 Aligned_cols=77 Identities=13% Similarity=0.072 Sum_probs=66.9
Q ss_pred CCCCeEEEEeCCHHHHHHHHHhh-CCeEeCCeEEEEeecCC--------------------CCceEEEEcCCCCCCChHH
Q psy11608 13 SASAFAFVQYTDIASVVRAMRAM-DGEYVGHNRVNLGYGKS--------------------LATTCVWVDGVAGKCGTGE 71 (99)
Q Consensus 13 ~s~gfaFV~F~~~~~a~~Ai~~m-~G~~i~~~~i~v~~~k~--------------------~~~~~lfVg~l~~~~s~~~ 71 (99)
.-+|+++|+|.+.++|++|+++| ||..+.| ++++.++.. .+.++|||||||+++++++
T Consensus 11 ~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~ 89 (150)
T 2i2y_A 11 TLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGNNGNKTE 89 (150)
T ss_dssp SSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCCSCCSCHH
T ss_pred cccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCHHH
Confidence 67899999999999999999999 9999999 999887542 2368999999999999999
Q ss_pred HHhhhcCCCceeeeeEEEEc
Q psy11608 72 HNRVNLGYGKSLATTCVWVD 91 (99)
Q Consensus 72 L~~~F~~fG~i~~~~~v~~d 91 (99)
|+++|++||+|.++ .+..|
T Consensus 90 l~~~F~~~G~i~~v-~i~~~ 108 (150)
T 2i2y_A 90 LERAFGYYGPLRSV-WVARN 108 (150)
T ss_dssp HHHHHHHHSCEEEE-EECSS
T ss_pred HHHHHHhhCCEEEE-EEeeC
Confidence 99999999999765 33344
No 25
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.48 E-value=1.2e-14 Score=90.88 Aligned_cols=61 Identities=21% Similarity=0.380 Sum_probs=54.1
Q ss_pred ceEEEEEeeCCCCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecCCCC--------------ceEEEEcCCC
Q psy11608 2 VMYFVDIKKQSSASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKSLA--------------TTCVWVDGVA 64 (99)
Q Consensus 2 ~I~~v~ik~~~~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k~~~--------------~~~lfVg~l~ 64 (99)
+|.+|.|.++ ++|||||+|.+.++|++|++.|||..+.+++|+|.++++.+ ..+||||||+
T Consensus 26 ~i~~v~i~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~~~~~~~~~~~~~~~~ifvg~L~ 100 (101)
T 2hvz_A 26 PLRTVWIARN--PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPRRSRFDRPPARRKLLEVLFNGPLE 100 (101)
T ss_dssp CCSEEEEESS--SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCCCSSCCCSCCCSCCCCSCCCSCCCC
T ss_pred CeEEEEEeeC--CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCCCcccCCCCCccccCCCceecCCCC
Confidence 5788888887 89999999999999999999999999999999999876432 4679999996
No 26
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.44 E-value=2.2e-13 Score=85.88 Aligned_cols=51 Identities=14% Similarity=0.372 Sum_probs=47.4
Q ss_pred ceEEEEEeeCC---CCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecCC
Q psy11608 2 VMYFVDIKKQS---SASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKS 52 (99)
Q Consensus 2 ~I~~v~ik~~~---~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k~ 52 (99)
+|.+|.|.+|. +++|||||+|.+.++|++|++.|||..++|++|+|.|++|
T Consensus 45 ~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~AkP 98 (99)
T 4fxv_A 45 EVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARP 98 (99)
T ss_dssp CEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCB
T ss_pred CEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEeeC
Confidence 58899998874 7899999999999999999999999999999999999975
No 27
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.39 E-value=5.6e-13 Score=88.11 Aligned_cols=53 Identities=11% Similarity=0.148 Sum_probs=49.3
Q ss_pred ceEEEEEeeCCCCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecCCCC
Q psy11608 2 VMYFVDIKKQSSASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKSLA 54 (99)
Q Consensus 2 ~I~~v~ik~~~~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k~~~ 54 (99)
.|++|.+.++++++|||||+|.+.++|++|++.|||..+.|++|+|.|++..+
T Consensus 59 ~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~~a~~~~ 111 (127)
T 2a3j_A 59 DILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVITFSETPQ 111 (127)
T ss_dssp CEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEEECCCCC
T ss_pred CeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEEEccCcc
Confidence 58899998888999999999999999999999999999999999999987643
No 28
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.38 E-value=2.3e-12 Score=80.19 Aligned_cols=53 Identities=11% Similarity=0.221 Sum_probs=48.9
Q ss_pred ceEEEEEeeCCCCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecCCCC
Q psy11608 2 VMYFVDIKKQSSASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKSLA 54 (99)
Q Consensus 2 ~I~~v~ik~~~~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k~~~ 54 (99)
+|.+|.|.++..++|||||+|.+.++|++|++.|||..+.+++|+|.++++.+
T Consensus 39 ~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~~a~~~~ 91 (96)
T 2dgx_A 39 KVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVSLATGAS 91 (96)
T ss_dssp CEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCSS
T ss_pred cEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCCCC
Confidence 58899999887669999999999999999999999999999999999987654
No 29
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.37 E-value=3.9e-12 Score=80.14 Aligned_cols=46 Identities=11% Similarity=0.064 Sum_probs=42.3
Q ss_pred ceEEEEEeeCCCCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeec
Q psy11608 2 VMYFVDIKKQSSASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYG 50 (99)
Q Consensus 2 ~I~~v~ik~~~~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~ 50 (99)
+|.++.+.. |+|||||+|.++++|++|++.|||..+++++|+|.++
T Consensus 33 ~V~~~~l~~---~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A 78 (89)
T 2wbr_A 33 PLVSFHPYL---NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESP 78 (89)
T ss_dssp CEEEEEEET---TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred CEEEEEEcC---CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEEC
Confidence 678888754 8999999999999999999999999999999999876
No 30
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.37 E-value=2.7e-12 Score=81.91 Aligned_cols=53 Identities=21% Similarity=0.283 Sum_probs=48.2
Q ss_pred ceEEEEEeeCC------CCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecCCCC
Q psy11608 2 VMYFVDIKKQS------SASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKSLA 54 (99)
Q Consensus 2 ~I~~v~ik~~~------~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k~~~ 54 (99)
+|.+|.|.++. +++|||||+|.+.++|++|++.|||..+.+++|+|.++++.+
T Consensus 44 ~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~a~~k~ 102 (111)
T 2cpi_A 44 KIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTLKASLGTTKY 102 (111)
T ss_dssp CEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEESCCCCS
T ss_pred CEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEEEEEEeccccc
Confidence 58899998875 567999999999999999999999999999999999998765
No 31
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.37 E-value=1.9e-13 Score=90.56 Aligned_cols=80 Identities=16% Similarity=0.168 Sum_probs=39.4
Q ss_pred CeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecCCC----CceEEEEcCCCCCCChHHHHhhhcCCCceeeeeEEEEc
Q psy11608 16 AFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKSL----ATTCVWVDGVAGKCGTGEHNRVNLGYGKSLATTCVWVD 91 (99)
Q Consensus 16 gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k~~----~~~~lfVg~l~~~~s~~~L~~~F~~fG~i~~~~~v~~d 91 (99)
-|+|.+|.|...+..|++.|+|...+++. ...++.+. +.++|||+|||.++++++|+++|++||+|..+ .+..|
T Consensus 5 ~~~~~~~~~~~~~~~a~~~~~g~~~~g~~-~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v-~i~~~ 82 (135)
T 2lea_A 5 HHHHHHSSGLVPRGSHMASMTGGQQMGRG-SMSYGRPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDV-YIPRD 82 (135)
T ss_dssp -------------------------------CCSCCSCSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEE-ECCCC
T ss_pred ccccccccCCCchhhhhhhccCCCCCCCC-CCCcCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEE-EEEec
Confidence 46788888888888999999987666643 34455443 35789999999999999999999999999775 55577
Q ss_pred CCCCCC
Q psy11608 92 GVAGKC 97 (99)
Q Consensus 92 ~~~g~~ 97 (99)
+.+|++
T Consensus 83 ~~~g~~ 88 (135)
T 2lea_A 83 RYTKES 88 (135)
T ss_dssp SSSSSC
T ss_pred CCCCcc
Confidence 766654
No 32
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.35 E-value=2.6e-12 Score=77.17 Aligned_cols=53 Identities=17% Similarity=0.303 Sum_probs=48.3
Q ss_pred ceEEEEEeeCC---CCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecCCCC
Q psy11608 2 VMYFVDIKKQS---SASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKSLA 54 (99)
Q Consensus 2 ~I~~v~ik~~~---~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k~~~ 54 (99)
+|.+|.|.+++ +++|||||+|.+.++|++|++.|||..++|++|+|.++++.+
T Consensus 27 ~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~ 82 (83)
T 3md1_A 27 SYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKLE 82 (83)
T ss_dssp TEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCCC
T ss_pred CeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcCC
Confidence 58899999874 789999999999999999999999999999999999987653
No 33
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.35 E-value=2e-12 Score=78.28 Aligned_cols=53 Identities=13% Similarity=0.325 Sum_probs=46.5
Q ss_pred ceEEEEEeeCC---CCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecCCCC
Q psy11608 2 VMYFVDIKKQS---SASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKSLA 54 (99)
Q Consensus 2 ~I~~v~ik~~~---~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k~~~ 54 (99)
.|.+|.|.++. +++|||||+|.+.++|++|++.|||..+++++|+|.++++.|
T Consensus 32 ~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~kp 87 (87)
T 3bs9_A 32 RISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKP 87 (87)
T ss_dssp CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC---
T ss_pred CEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecCCCC
Confidence 58899998874 689999999999999999999999999999999999987654
No 34
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.34 E-value=3.6e-12 Score=81.54 Aligned_cols=50 Identities=16% Similarity=0.283 Sum_probs=46.3
Q ss_pred ceEEEEEeeCC----CCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecC
Q psy11608 2 VMYFVDIKKQS----SASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGK 51 (99)
Q Consensus 2 ~I~~v~ik~~~----~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k 51 (99)
.|++|.|.+++ +++|||||+|.++++|++|+++|||+.+.|++|++.++.
T Consensus 39 ~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~i~v~~a~ 92 (105)
T 2pe8_A 39 KVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRVVKACFYN 92 (105)
T ss_dssp CEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcEEEEEEcC
Confidence 58999999873 689999999999999999999999999999999999875
No 35
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.33 E-value=7.5e-12 Score=78.26 Aligned_cols=53 Identities=15% Similarity=0.296 Sum_probs=48.5
Q ss_pred ceEEEEEeeCC-CCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecCCCC
Q psy11608 2 VMYFVDIKKQS-SASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKSLA 54 (99)
Q Consensus 2 ~I~~v~ik~~~-~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k~~~ 54 (99)
+|.+|.|.++. .++|||||+|.+.++|++|++.|||..+.+++|+|.++++.+
T Consensus 41 ~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 94 (103)
T 2cqi_A 41 PCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPS 94 (103)
T ss_dssp CEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCTT
T ss_pred CEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEECCCCc
Confidence 58899999885 689999999999999999999999999999999999987643
No 36
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.33 E-value=4.1e-12 Score=80.32 Aligned_cols=52 Identities=23% Similarity=0.354 Sum_probs=48.9
Q ss_pred ceEEEEEeeCCCCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecCCC
Q psy11608 2 VMYFVDIKKQSSASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKSL 53 (99)
Q Consensus 2 ~I~~v~ik~~~~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k~~ 53 (99)
.|++|.|+.+.+++|||||+|.+.++|++|++.|||..+.+++|+|.++++.
T Consensus 48 ~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~ 99 (109)
T 1x4a_A 48 AIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSG 99 (109)
T ss_dssp CEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCCCC
T ss_pred CeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcccC
Confidence 5889999999899999999999999999999999999999999999998754
No 37
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.33 E-value=2.8e-12 Score=82.34 Aligned_cols=51 Identities=14% Similarity=0.060 Sum_probs=47.2
Q ss_pred ceEEEEEeeCC---CCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecCC
Q psy11608 2 VMYFVDIKKQS---SASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKS 52 (99)
Q Consensus 2 ~I~~v~ik~~~---~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k~ 52 (99)
.|.+|.|.+|. +|+|||||+|.+.++|++|++.|||..+.+++|+|.+++.
T Consensus 32 ~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a~~ 85 (110)
T 3s8s_A 32 EVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLDIK 85 (110)
T ss_dssp CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECST
T ss_pred CeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 58999999885 6899999999999999999999999999999999998754
No 38
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.32 E-value=7.5e-12 Score=76.85 Aligned_cols=50 Identities=18% Similarity=0.212 Sum_probs=46.2
Q ss_pred ceEEEEEeeCC---CCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecC
Q psy11608 2 VMYFVDIKKQS---SASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGK 51 (99)
Q Consensus 2 ~I~~v~ik~~~---~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k 51 (99)
+|.+|.|.++. +++|||||+|.+.++|++|++.|||..+.+++|+|.|++
T Consensus 42 ~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ak 94 (94)
T 2e5h_A 42 KVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASIAI 94 (94)
T ss_dssp CEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEECC
T ss_pred CeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEecC
Confidence 58899998874 689999999999999999999999999999999999875
No 39
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.32 E-value=1.1e-12 Score=81.41 Aligned_cols=53 Identities=19% Similarity=0.319 Sum_probs=45.6
Q ss_pred ceEEEEEeeC---CCCCCeEEEEeCCHHHHHHHHHhhC-CeEeCCeEEEEeecCCCC
Q psy11608 2 VMYFVDIKKQ---SSASAFAFVQYTDIASVVRAMRAMD-GEYVGHNRVNLGYGKSLA 54 (99)
Q Consensus 2 ~I~~v~ik~~---~~s~gfaFV~F~~~~~a~~Ai~~m~-G~~i~~~~i~v~~~k~~~ 54 (99)
+|.+|.|.+| ++++|||||+|.+.++|++|++.|+ +..++|++|+|.|+++.+
T Consensus 28 ~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a~~~~ 84 (91)
T 2lxi_A 28 QAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYSDPKP 84 (91)
T ss_dssp CCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECCCSCC
T ss_pred EeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEcCCCC
Confidence 4677777766 4899999999999999999999985 568999999999998754
No 40
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.32 E-value=2.8e-12 Score=81.81 Aligned_cols=49 Identities=4% Similarity=0.121 Sum_probs=45.6
Q ss_pred ceEEEEEeeCC--CCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeec
Q psy11608 2 VMYFVDIKKQS--SASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYG 50 (99)
Q Consensus 2 ~I~~v~ik~~~--~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~ 50 (99)
+|++|.|.++. +++|||||+|.++++|++|+++|||+.+.|++|+|.|+
T Consensus 53 ~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~v~~s 103 (104)
T 1jmt_A 53 EVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHAELS 103 (104)
T ss_dssp CEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECCEEEC
T ss_pred ceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEEEEEc
Confidence 68999999875 68999999999999999999999999999999999875
No 41
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.30 E-value=8e-12 Score=77.33 Aligned_cols=53 Identities=19% Similarity=0.423 Sum_probs=48.1
Q ss_pred ceEEEEEeeCC---CCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecCCCC
Q psy11608 2 VMYFVDIKKQS---SASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKSLA 54 (99)
Q Consensus 2 ~I~~v~ik~~~---~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k~~~ 54 (99)
.|.+|.|.++. +++|||||+|.+.++|++|++.|||..++|++|+|.++++.+
T Consensus 28 ~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 83 (96)
T 2x1f_A 28 PVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSNSD 83 (96)
T ss_dssp CEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCSS
T ss_pred CEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCCCC
Confidence 58899998873 789999999999999999999999999999999999987653
No 42
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.29 E-value=1.5e-11 Score=76.80 Aligned_cols=53 Identities=19% Similarity=0.316 Sum_probs=48.3
Q ss_pred ceEEEEEeeCC-CCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecCCCC
Q psy11608 2 VMYFVDIKKQS-SASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKSLA 54 (99)
Q Consensus 2 ~I~~v~ik~~~-~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k~~~ 54 (99)
.|.+|.|.++. +++|||||+|.+.++|++|++.|||..+.+++|+|.++++.+
T Consensus 41 ~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 94 (103)
T 2cq3_A 41 KILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARV 94 (103)
T ss_dssp CEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCSSC
T ss_pred CeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEcccCC
Confidence 58899998885 689999999999999999999999999999999999987643
No 43
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.29 E-value=1.8e-12 Score=81.68 Aligned_cols=50 Identities=16% Similarity=0.331 Sum_probs=44.3
Q ss_pred eEEEEEeeCC---CCCCeEEEEeCCHHHHHHHHHhhCCe----EeCCeEEEEeecCC
Q psy11608 3 MYFVDIKKQS---SASAFAFVQYTDIASVVRAMRAMDGE----YVGHNRVNLGYGKS 52 (99)
Q Consensus 3 I~~v~ik~~~---~s~gfaFV~F~~~~~a~~Ai~~m~G~----~i~~~~i~v~~~k~ 52 (99)
|.+|.|.+|+ +|||||||+|.+.++|++|++.|||. .+.|++|+|.|+++
T Consensus 38 v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i~V~~Aks 94 (95)
T 2lkz_A 38 VNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTIGVDFAKS 94 (95)
T ss_dssp GGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEEEEEECCC
T ss_pred EEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEEEEEEccC
Confidence 4577777774 79999999999999999999999996 68999999999975
No 44
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.29 E-value=7e-12 Score=80.12 Aligned_cols=50 Identities=18% Similarity=0.341 Sum_probs=45.7
Q ss_pred ceEEEEEeeCC-----CCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecC
Q psy11608 2 VMYFVDIKKQS-----SASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGK 51 (99)
Q Consensus 2 ~I~~v~ik~~~-----~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k 51 (99)
+|++|.|.++. +++|||||+|.++++|++|+++|||+.++|++|++.|..
T Consensus 41 ~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~f~GR~i~v~~~~ 95 (105)
T 3v4m_A 41 LVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKFANRVVVTKYCD 95 (105)
T ss_dssp CEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEeC
Confidence 58899998874 579999999999999999999999999999999998764
No 45
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.28 E-value=6.2e-12 Score=75.77 Aligned_cols=50 Identities=16% Similarity=0.208 Sum_probs=45.5
Q ss_pred ceEEEEEeeCC---CCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecC
Q psy11608 2 VMYFVDIKKQS---SASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGK 51 (99)
Q Consensus 2 ~I~~v~ik~~~---~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k 51 (99)
+|.+|.|.++. +++|||||+|.+.++|++|++.|||..+++++|+|.+++
T Consensus 33 ~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ak 85 (85)
T 3mdf_A 33 DITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAK 85 (85)
T ss_dssp CEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 57888887763 689999999999999999999999999999999999875
No 46
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.28 E-value=1.2e-11 Score=76.63 Aligned_cols=53 Identities=17% Similarity=0.167 Sum_probs=48.0
Q ss_pred ceEEEEEeeCC---CCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecCCCC
Q psy11608 2 VMYFVDIKKQS---SASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKSLA 54 (99)
Q Consensus 2 ~I~~v~ik~~~---~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k~~~ 54 (99)
+|.+|.|.++. +++|||||+|.+.++|++|++.|||..+.+++|+|.++++.+
T Consensus 34 ~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 89 (99)
T 1whw_A 34 PLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPSTIKK 89 (99)
T ss_dssp CEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEECCCCS
T ss_pred CEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCCc
Confidence 58889998864 789999999999999999999999999999999999987654
No 47
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.28 E-value=1.1e-11 Score=76.01 Aligned_cols=51 Identities=20% Similarity=0.262 Sum_probs=46.9
Q ss_pred ceEEEEEeeCC---CCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecCC
Q psy11608 2 VMYFVDIKKQS---SASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKS 52 (99)
Q Consensus 2 ~I~~v~ik~~~---~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k~ 52 (99)
+|.+|.|.+++ +++|||||+|.+.++|++|++.|||..+.+++|+|.++++
T Consensus 41 ~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 94 (95)
T 2cqc_A 41 PIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSGPSS 94 (95)
T ss_dssp CEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCSC
T ss_pred CeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEecCC
Confidence 58899998874 6799999999999999999999999999999999998864
No 48
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.27 E-value=1.1e-11 Score=76.29 Aligned_cols=53 Identities=15% Similarity=0.283 Sum_probs=48.3
Q ss_pred ceEEEEEeeCC---CCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecCCCC
Q psy11608 2 VMYFVDIKKQS---SASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKSLA 54 (99)
Q Consensus 2 ~I~~v~ik~~~---~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k~~~ 54 (99)
.|.+|.|.++. +++|||||+|.+.++|++|++.|||..+.+++|+|.++++.+
T Consensus 31 ~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 86 (95)
T 2dnz_A 31 KIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVTERL 86 (95)
T ss_dssp CEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEESSCCC
T ss_pred CEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccccc
Confidence 58899999874 789999999999999999999999999999999999987653
No 49
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.27 E-value=1.2e-11 Score=79.03 Aligned_cols=52 Identities=12% Similarity=0.176 Sum_probs=46.5
Q ss_pred ceEEEEEeeCCCCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecCCCC
Q psy11608 2 VMYFVDIKKQSSASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKSLA 54 (99)
Q Consensus 2 ~I~~v~ik~~~~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k~~~ 54 (99)
.|.+|.| .+..++|||||+|.+.++|++|++.|||..+.+++|+|.++.+.+
T Consensus 52 ~v~~v~i-~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l~v~~a~~~~ 103 (112)
T 2dit_A 52 QIRKLLL-FDRHPDGVASVSFRDPEEADYCIQTLDGRWFGGRQITAQAWDGTT 103 (112)
T ss_dssp CCSEEEE-ETTCTTCEEEEECSCHHHHHHHHHHSTTCEETTEECEEEECCSCC
T ss_pred CEeEEEE-ecCCCCEEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeCCCC
Confidence 5778866 566799999999999999999999999999999999999987643
No 50
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.26 E-value=1.4e-11 Score=76.65 Aligned_cols=53 Identities=17% Similarity=0.285 Sum_probs=48.4
Q ss_pred ceEEEEEeeCC--CCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecCCCC
Q psy11608 2 VMYFVDIKKQS--SASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKSLA 54 (99)
Q Consensus 2 ~I~~v~ik~~~--~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k~~~ 54 (99)
+|.+|.|..+. +++|||||+|.+.++|++|++.|||..+.+++|+|.++++.+
T Consensus 43 ~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 97 (100)
T 2do4_A 43 TVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAISNSGP 97 (100)
T ss_dssp CEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEECCCCS
T ss_pred CeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCCCC
Confidence 58899998875 678999999999999999999999999999999999988754
No 51
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.26 E-value=3.5e-12 Score=78.76 Aligned_cols=53 Identities=19% Similarity=0.305 Sum_probs=48.2
Q ss_pred ceEEEEEeeCCCCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecCCCC
Q psy11608 2 VMYFVDIKKQSSASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKSLA 54 (99)
Q Consensus 2 ~I~~v~ik~~~~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k~~~ 54 (99)
.|.+|.|.+.+.++|||||+|.+.++|++|++.|||..+.|++|+|.|+++.+
T Consensus 38 ~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 90 (97)
T 1nu4_A 38 QILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYAKTDS 90 (97)
T ss_dssp CEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSSCC
T ss_pred CEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEEEEccCCC
Confidence 57888888777889999999999999999999999999999999999987654
No 52
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.26 E-value=1.1e-11 Score=76.15 Aligned_cols=51 Identities=24% Similarity=0.257 Sum_probs=46.8
Q ss_pred ceEEEEEeeCC--CCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecCC
Q psy11608 2 VMYFVDIKKQS--SASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKS 52 (99)
Q Consensus 2 ~I~~v~ik~~~--~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k~ 52 (99)
+|.+|.|.++. +++|||||+|.+.++|++|++.|||..+.+++|+|.++++
T Consensus 42 ~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 94 (95)
T 2ywk_A 42 PLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGPSS 94 (95)
T ss_dssp CEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECCCC
T ss_pred CEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEcCC
Confidence 58899998875 6789999999999999999999999999999999998763
No 53
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.26 E-value=1.6e-11 Score=76.77 Aligned_cols=53 Identities=19% Similarity=0.322 Sum_probs=48.2
Q ss_pred ceEEEEEeeCC---CCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecCCCC
Q psy11608 2 VMYFVDIKKQS---SASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKSLA 54 (99)
Q Consensus 2 ~I~~v~ik~~~---~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k~~~ 54 (99)
+|.+|.|.++. .++|||||+|.+.++|++|++.|||..+.+++|+|.++++.+
T Consensus 41 ~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 96 (103)
T 2cq0_A 41 SISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWAKPST 96 (103)
T ss_dssp CEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEESSCCC
T ss_pred CeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEECCCCC
Confidence 58899998874 789999999999999999999999999999999999987643
No 54
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.25 E-value=3.1e-12 Score=80.30 Aligned_cols=51 Identities=14% Similarity=0.248 Sum_probs=46.3
Q ss_pred ceEEEEEeeCC---CCCCeEEEEeCCHHHHHHHHHhhCCeEeCC-eEEEEeecCC
Q psy11608 2 VMYFVDIKKQS---SASAFAFVQYTDIASVVRAMRAMDGEYVGH-NRVNLGYGKS 52 (99)
Q Consensus 2 ~I~~v~ik~~~---~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~-~~i~v~~~k~ 52 (99)
+|.+|.|.++. +++|||||+|.+.++|++|++.|||..+.+ ++|+|.++++
T Consensus 38 ~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~l~V~~a~~ 92 (100)
T 3ns6_A 38 KVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHRLFLYTMKD 92 (100)
T ss_dssp CEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEESHH
T ss_pred CEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeEEEEEECch
Confidence 58889988875 699999999999999999999999999998 9999998754
No 55
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.25 E-value=1e-11 Score=77.39 Aligned_cols=53 Identities=15% Similarity=0.226 Sum_probs=47.3
Q ss_pred ceEEEEEeeC---CCCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecCCCC
Q psy11608 2 VMYFVDIKKQ---SSASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKSLA 54 (99)
Q Consensus 2 ~I~~v~ik~~---~~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k~~~ 54 (99)
.|++|.|.++ ++++|||||+|.+.++|++|++.|||..+.+++|+|.++++.+
T Consensus 38 ~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~ 93 (102)
T 2cqb_A 38 DITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAKPMR 93 (102)
T ss_dssp CCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEECCCCC
T ss_pred CEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeCCCCC
Confidence 4778888776 3799999999999999999999999999999999999987643
No 56
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.24 E-value=1.7e-12 Score=79.78 Aligned_cols=53 Identities=13% Similarity=0.089 Sum_probs=44.1
Q ss_pred ceEEEEEeeCC---CCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecCCCC
Q psy11608 2 VMYFVDIKKQS---SASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKSLA 54 (99)
Q Consensus 2 ~I~~v~ik~~~---~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k~~~ 54 (99)
.|.+|.|.++. +++|||||+|.+.++|++|++.|||..+.|++|+|.++++.+
T Consensus 29 ~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~~~~ 84 (90)
T 3p5t_L 29 DILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSNKLE 84 (90)
T ss_dssp CCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC----
T ss_pred ceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECCCCc
Confidence 47788888864 789999999999999999999999999999999999887543
No 57
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.24 E-value=1.6e-11 Score=77.51 Aligned_cols=53 Identities=11% Similarity=0.219 Sum_probs=47.8
Q ss_pred ceEEEEEeeCC---CCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecCCCC
Q psy11608 2 VMYFVDIKKQS---SASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKSLA 54 (99)
Q Consensus 2 ~I~~v~ik~~~---~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k~~~ 54 (99)
.|.+|.|.++. +++|||||+|.+.++|++|++.|||..++|++|+|.++++.+
T Consensus 52 ~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 107 (110)
T 1oo0_B 52 EIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKG 107 (110)
T ss_dssp CEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEESS
T ss_pred CEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEcccCC
Confidence 58889998764 789999999999999999999999999999999999987654
No 58
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.24 E-value=2.2e-11 Score=77.49 Aligned_cols=52 Identities=13% Similarity=0.329 Sum_probs=47.5
Q ss_pred ceEEEEEeeCC---CCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecCCC
Q psy11608 2 VMYFVDIKKQS---SASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKSL 53 (99)
Q Consensus 2 ~I~~v~ik~~~---~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k~~ 53 (99)
.|.+|.|.++. .++|||||+|.+.++|++|++.|||..+++++|+|.|+++.
T Consensus 41 ~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 95 (115)
T 2dgo_A 41 RISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRK 95 (115)
T ss_dssp CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEESSCC
T ss_pred CeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEccCC
Confidence 58899998873 78999999999999999999999999999999999998754
No 59
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.24 E-value=8.2e-12 Score=78.33 Aligned_cols=53 Identities=9% Similarity=0.209 Sum_probs=47.9
Q ss_pred ceEEEEEeeCC---CCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecCCCC
Q psy11608 2 VMYFVDIKKQS---SASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKSLA 54 (99)
Q Consensus 2 ~I~~v~ik~~~---~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k~~~ 54 (99)
+|.+|.|.++. .++|||||+|.+.++|++|++.|||..++|++|+|.++++.+
T Consensus 49 ~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 104 (106)
T 1p27_B 49 EIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCFVRG 104 (106)
T ss_dssp CEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEESEESS
T ss_pred CeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEeecCCC
Confidence 58899998884 679999999999999999999999999999999999987543
No 60
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.23 E-value=1.4e-11 Score=75.91 Aligned_cols=53 Identities=19% Similarity=0.466 Sum_probs=46.2
Q ss_pred ceEEE-EEeeC---CCCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecCCCC
Q psy11608 2 VMYFV-DIKKQ---SSASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKSLA 54 (99)
Q Consensus 2 ~I~~v-~ik~~---~~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k~~~ 54 (99)
+|.+| .|.++ +.++|||||+|.+.++|++|++.|||..+.+++|+|.++++.+
T Consensus 31 ~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 87 (96)
T 1x5t_A 31 VILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKD 87 (96)
T ss_dssp CBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEESCCCC
T ss_pred CeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEecccC
Confidence 35666 77776 3789999999999999999999999999999999999987654
No 61
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.23 E-value=1.3e-11 Score=78.57 Aligned_cols=52 Identities=19% Similarity=0.321 Sum_probs=46.9
Q ss_pred ceEEEEEeeCC-CCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecCCC
Q psy11608 2 VMYFVDIKKQS-SASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKSL 53 (99)
Q Consensus 2 ~I~~v~ik~~~-~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k~~ 53 (99)
.|.+|.|.++. +++|||||+|.+.++|++|++.|||..++|++|+|.++++.
T Consensus 55 ~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 107 (109)
T 2err_A 55 KILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATAR 107 (109)
T ss_dssp CCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEECCCS
T ss_pred CEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCC
Confidence 46788888774 68999999999999999999999999999999999998754
No 62
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.23 E-value=4.7e-11 Score=74.07 Aligned_cols=50 Identities=16% Similarity=0.303 Sum_probs=45.1
Q ss_pred ceEEEEEeeCCCCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecCCCC
Q psy11608 2 VMYFVDIKKQSSASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKSLA 54 (99)
Q Consensus 2 ~I~~v~ik~~~~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k~~~ 54 (99)
.|.+|.|. +++|||||+|.+.++|++|++.|||..+.+++|+|.|+++.+
T Consensus 39 ~i~~v~i~---~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~~ 88 (97)
T 1x5p_A 39 NIIDLSMD---PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQP 88 (97)
T ss_dssp CEEEEEEE---TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSSCC
T ss_pred CEEEEEec---CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCCC
Confidence 57788884 789999999999999999999999999999999999987653
No 63
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.23 E-value=2.5e-11 Score=73.36 Aligned_cols=52 Identities=13% Similarity=0.322 Sum_probs=46.8
Q ss_pred ceEEEEEeeCC---C-CCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecCCC
Q psy11608 2 VMYFVDIKKQS---S-ASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKSL 53 (99)
Q Consensus 2 ~I~~v~ik~~~---~-s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k~~ 53 (99)
+|.+|.|..+. . ++|||||+|.+.++|++|++.|||..++|++|+|.++.+.
T Consensus 30 ~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 85 (88)
T 4a8x_A 30 KIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAVLAP 85 (88)
T ss_dssp CEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEECCC
T ss_pred CEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEECCCC
Confidence 57888888876 2 8999999999999999999999999999999999988654
No 64
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.22 E-value=9.5e-12 Score=77.54 Aligned_cols=53 Identities=23% Similarity=0.350 Sum_probs=47.6
Q ss_pred ceEEEEEeeCC---CCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecCCCC
Q psy11608 2 VMYFVDIKKQS---SASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKSLA 54 (99)
Q Consensus 2 ~I~~v~ik~~~---~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k~~~ 54 (99)
+|.+|.|.++. .++|||||+|.+.++|++|++.|||..+.+++|+|.++++.+
T Consensus 38 ~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 93 (102)
T 1x5s_A 38 QISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAGKSS 93 (102)
T ss_dssp CCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEEECCC
T ss_pred CeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCC
Confidence 57889998874 689999999999999999999999999999999999987543
No 65
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.22 E-value=2.2e-11 Score=74.54 Aligned_cols=52 Identities=19% Similarity=0.347 Sum_probs=46.0
Q ss_pred ceEEEEEeeCC--CCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecCCCC
Q psy11608 2 VMYFVDIKKQS--SASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKSLA 54 (99)
Q Consensus 2 ~I~~v~ik~~~--~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k~~~ 54 (99)
.|.+|.|.++. +++|||||+|.+.++|++|++ |||..+++++|+|.++++.+
T Consensus 35 ~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a~~~~ 88 (91)
T 2dgw_A 35 KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFREKSGP 88 (91)
T ss_dssp CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEESSCC
T ss_pred CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEECCcCC
Confidence 36678888763 689999999999999999999 99999999999999987654
No 66
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.22 E-value=1.8e-11 Score=76.60 Aligned_cols=53 Identities=11% Similarity=0.152 Sum_probs=48.2
Q ss_pred ceEEEEEeeCC---CCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecCCCC
Q psy11608 2 VMYFVDIKKQS---SASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKSLA 54 (99)
Q Consensus 2 ~I~~v~ik~~~---~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k~~~ 54 (99)
.|.+|.|.++. .++|||||+|.+.++|++|++.|||..+.+++|+|.++++.+
T Consensus 41 ~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 96 (105)
T 1x5u_A 41 PVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNKASAHN 96 (105)
T ss_dssp CEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEETTTTS
T ss_pred CeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCCC
Confidence 58889998864 799999999999999999999999999999999999987654
No 67
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.21 E-value=1.4e-11 Score=76.99 Aligned_cols=52 Identities=23% Similarity=0.277 Sum_probs=47.5
Q ss_pred ceEEEEEeeC---CCCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecCCC
Q psy11608 2 VMYFVDIKKQ---SSASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKSL 53 (99)
Q Consensus 2 ~I~~v~ik~~---~~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k~~ 53 (99)
.|.+|.|.++ ++++|||||+|.+.++|++|++.|||..+.+++|+|.++++.
T Consensus 39 ~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~ 93 (103)
T 2dnm_A 39 RVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVARYG 93 (103)
T ss_dssp CEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEECSSC
T ss_pred CEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEECCcC
Confidence 5889999887 478999999999999999999999999999999999998753
No 68
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.21 E-value=1.8e-11 Score=77.97 Aligned_cols=53 Identities=21% Similarity=0.340 Sum_probs=47.5
Q ss_pred ceEEEEEeeCC---CCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecCCCC
Q psy11608 2 VMYFVDIKKQS---SASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKSLA 54 (99)
Q Consensus 2 ~I~~v~ik~~~---~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k~~~ 54 (99)
.|.+|.|.++. .++|||||+|.+.++|++|++.|||..+.+++|+|.++++.+
T Consensus 51 ~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 106 (115)
T 2cpz_A 51 NVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRSKN 106 (115)
T ss_dssp CCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECCCCSC
T ss_pred CeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEcCCCC
Confidence 47888888874 788999999999999999999999999999999999987643
No 69
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.21 E-value=3.5e-11 Score=74.65 Aligned_cols=52 Identities=19% Similarity=0.225 Sum_probs=47.0
Q ss_pred ceEEEEEeeCC---CCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecCCCC
Q psy11608 2 VMYFVDIKKQS---SASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKSLA 54 (99)
Q Consensus 2 ~I~~v~ik~~~---~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k~~~ 54 (99)
.|.+|.|.++. +++|||||+|.+.++|++|++ |||..+.+++|+|.++++.+
T Consensus 36 ~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~a~~~~ 90 (99)
T 2dgs_A 36 VVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKRAEPRD 90 (99)
T ss_dssp CEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEECCCCC
T ss_pred CeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEECCCCc
Confidence 58899998874 689999999999999999998 99999999999999987653
No 70
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.21 E-value=2.8e-11 Score=75.70 Aligned_cols=51 Identities=16% Similarity=0.418 Sum_probs=46.3
Q ss_pred eEEEEEeeCC---CCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecCCCC
Q psy11608 3 MYFVDIKKQS---SASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKSLA 54 (99)
Q Consensus 3 I~~v~ik~~~---~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k~~~ 54 (99)
|.+|.|.++. +++|||||+|.+.++|++|+ +|||..+.+++|+|.++++.+
T Consensus 41 i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~~~ 94 (103)
T 2dng_A 41 IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDIAEGRK 94 (103)
T ss_dssp EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEECCCCC
T ss_pred ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEEecCCC
Confidence 7889998884 68999999999999999999 899999999999999987643
No 71
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.21 E-value=3.3e-11 Score=75.49 Aligned_cols=51 Identities=16% Similarity=0.464 Sum_probs=46.1
Q ss_pred eEEEEEeeC----CCCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecCCCC
Q psy11608 3 MYFVDIKKQ----SSASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKSLA 54 (99)
Q Consensus 3 I~~v~ik~~----~~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k~~~ 54 (99)
|.+|.|.++ ++++|||||+|.+.++|++|+ .|||..+.+++|+|.++++.+
T Consensus 41 i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~~~ 95 (104)
T 1wi8_A 41 ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVDVADQAQ 95 (104)
T ss_dssp EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEEECCCCC
T ss_pred ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEEEccCCC
Confidence 678888887 467999999999999999999 999999999999999987654
No 72
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.21 E-value=1.8e-11 Score=77.01 Aligned_cols=43 Identities=19% Similarity=0.132 Sum_probs=38.3
Q ss_pred CceEEEEcCCCCCCChHHHHhhhcCCCceeeeeEEEEcCCCCCC
Q psy11608 54 ATTCVWVDGVAGKCGTGEHNRVNLGYGKSLATTCVWVDGVAGKC 97 (99)
Q Consensus 54 ~~~~lfVg~l~~~~s~~~L~~~F~~fG~i~~~~~v~~d~~~g~~ 97 (99)
+.++|||+|||+++|+++|+++|++||+|.++ .+..|+.+|++
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v-~i~~d~~tg~~ 60 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESA-KLIRDKVAGHS 60 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEE-EEEECSSSCCE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEe-EeeecCCCCcc
Confidence 35789999999999999999999999999876 56689988875
No 73
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.20 E-value=2.3e-11 Score=76.79 Aligned_cols=51 Identities=14% Similarity=0.207 Sum_probs=45.3
Q ss_pred ceEEEEEeeC-CCCCCeEEEEeCCHHHHHHHHHhhCCeEeCCe-EEEEeecCC
Q psy11608 2 VMYFVDIKKQ-SSASAFAFVQYTDIASVVRAMRAMDGEYVGHN-RVNLGYGKS 52 (99)
Q Consensus 2 ~I~~v~ik~~-~~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~-~i~v~~~k~ 52 (99)
+|.+|.|.+. ++++|||||+|.+.++|++|++.|||..++|+ +|+|.++..
T Consensus 47 ~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l~V~~a~~ 99 (105)
T 2nlw_A 47 KITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRVNLFTD 99 (105)
T ss_dssp CEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCEEEEECSCC
T ss_pred CEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCceEEEEEcch
Confidence 5788888743 48999999999999999999999999999998 999998754
No 74
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.20 E-value=5e-11 Score=72.30 Aligned_cols=51 Identities=18% Similarity=0.283 Sum_probs=46.4
Q ss_pred ceEEEEEeeCC---CCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecCCC
Q psy11608 2 VMYFVDIKKQS---SASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKSL 53 (99)
Q Consensus 2 ~I~~v~ik~~~---~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k~~ 53 (99)
+|.+|.|.++. +++|||||+|.+.++|++|+ .|||..+.+++|+|.++++.
T Consensus 32 ~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~~~ 85 (89)
T 3ucg_A 32 SVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKRTN 85 (89)
T ss_dssp CEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETTTT
T ss_pred CEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEccCC
Confidence 58899998874 78999999999999999999 99999999999999998753
No 75
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.20 E-value=1.7e-11 Score=74.93 Aligned_cols=53 Identities=17% Similarity=0.342 Sum_probs=47.6
Q ss_pred ceEEEEEeeCC-CCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecCCCC
Q psy11608 2 VMYFVDIKKQS-SASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKSLA 54 (99)
Q Consensus 2 ~I~~v~ik~~~-~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k~~~ 54 (99)
.|.+|.|.++. +++|||||+|.+.++|++|++.|||..+.+++|+|.++++..
T Consensus 34 ~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~ 87 (92)
T 2dgv_A 34 HVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDRNAS 87 (92)
T ss_dssp CEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECSCCS
T ss_pred CEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCCC
Confidence 57888888864 789999999999999999999999999999999999987643
No 76
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.20 E-value=2e-11 Score=82.68 Aligned_cols=77 Identities=9% Similarity=0.052 Sum_probs=37.6
Q ss_pred EEeCCHHHHHHHHHhhCCeEeC--CeEEEEeec------------------------CCCCceEEEEcCCCCCCChHHHH
Q psy11608 20 VQYTDIASVVRAMRAMDGEYVG--HNRVNLGYG------------------------KSLATTCVWVDGVAGKCGTGEHN 73 (99)
Q Consensus 20 V~F~~~~~a~~Ai~~m~G~~i~--~~~i~v~~~------------------------k~~~~~~lfVg~l~~~~s~~~L~ 73 (99)
..|.+.++|+.|+..+++.... ++..+..++ ...+.++|||+|||.++++++|+
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~ 90 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAIHSYERVRNEDDDELEPGPQRSVEGWILFVTSIHEEAQEDEIQ 90 (165)
T ss_dssp -------------------------------------------------------CCCCC-CEEEEEESCCTTCCHHHHH
T ss_pred hhhhccccccccchhhccccccccCCCCCCCccccccccCccccccCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHH
Confidence 7899999999999999987554 333322210 11235789999999999999999
Q ss_pred hhhcCCCceeeeeEEEEcCCCCCC
Q psy11608 74 RVNLGYGKSLATTCVWVDGVAGKC 97 (99)
Q Consensus 74 ~~F~~fG~i~~~~~v~~d~~~g~~ 97 (99)
++|++||+|..+ .+..|+.+|++
T Consensus 91 ~~F~~~G~i~~v-~i~~~~~~g~~ 113 (165)
T 1rk8_A 91 EKFCDYGEIKNI-HLNLDRRTGFS 113 (165)
T ss_dssp HHHGGGSCEEEE-EEEECTTTSSE
T ss_pred HHhhcCCCEEEE-EEEecCCCCcE
Confidence 999999999876 56688888764
No 77
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.20 E-value=2.9e-11 Score=77.25 Aligned_cols=50 Identities=24% Similarity=0.363 Sum_probs=45.3
Q ss_pred ceEEEEEeeCC---CCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecC
Q psy11608 2 VMYFVDIKKQS---SASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGK 51 (99)
Q Consensus 2 ~I~~v~ik~~~---~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k 51 (99)
.|.+|.|.++. +++|||||+|.+.++|++|++.|||..+++++|+|.|++
T Consensus 66 ~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ak 118 (118)
T 2khc_A 66 NVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQLKK 118 (118)
T ss_dssp EEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEEC-
T ss_pred CEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecC
Confidence 58889998773 789999999999999999999999999999999999874
No 78
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.20 E-value=2.4e-11 Score=75.19 Aligned_cols=52 Identities=17% Similarity=0.367 Sum_probs=46.6
Q ss_pred ceEEEEEeeCC------CCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecCCC
Q psy11608 2 VMYFVDIKKQS------SASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKSL 53 (99)
Q Consensus 2 ~I~~v~ik~~~------~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k~~ 53 (99)
+|.+|.|.++. +++|||||+|.+.++|++|++.|||..+.+++|+|.++++.
T Consensus 31 ~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 88 (98)
T 2cpf_A 31 AIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVRISERA 88 (98)
T ss_dssp CEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEECSSCS
T ss_pred CeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEccCC
Confidence 57888888764 57899999999999999999999999999999999998754
No 79
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.20 E-value=4e-11 Score=75.25 Aligned_cols=50 Identities=14% Similarity=0.175 Sum_probs=45.9
Q ss_pred ceEEEEEeeCC--CCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecC
Q psy11608 2 VMYFVDIKKQS--SASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGK 51 (99)
Q Consensus 2 ~I~~v~ik~~~--~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k 51 (99)
+|.+|.|.++. +++|||||+|.+.++|++|++.|||..+.+++|+|.++.
T Consensus 55 ~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 106 (107)
T 3ulh_A 55 TLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVT 106 (107)
T ss_dssp CEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEeC
Confidence 58889998875 678999999999999999999999999999999999874
No 80
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.19 E-value=5.2e-11 Score=75.02 Aligned_cols=53 Identities=11% Similarity=0.228 Sum_probs=48.0
Q ss_pred ceEEEEEeeCC---CCCCeEEEEeCCHHHHHHHHHhhC------CeEeCCeEEEEeecCCCC
Q psy11608 2 VMYFVDIKKQS---SASAFAFVQYTDIASVVRAMRAMD------GEYVGHNRVNLGYGKSLA 54 (99)
Q Consensus 2 ~I~~v~ik~~~---~s~gfaFV~F~~~~~a~~Ai~~m~------G~~i~~~~i~v~~~k~~~ 54 (99)
+|.+|.|.++. .++|||||+|.+.++|++|++.|| |..+.+++|+|.++++.+
T Consensus 41 ~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~~l~v~~a~~~~ 102 (111)
T 1x4h_A 41 DLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQLKVDLAVTRD 102 (111)
T ss_dssp CEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCEEEEECCCCCC
T ss_pred CeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCEEEEEEECCCCc
Confidence 58899999874 689999999999999999999999 999999999999987643
No 81
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.19 E-value=6.7e-11 Score=74.77 Aligned_cols=50 Identities=16% Similarity=0.336 Sum_probs=46.0
Q ss_pred ceEEEEEeeCCCCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecCCCC
Q psy11608 2 VMYFVDIKKQSSASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKSLA 54 (99)
Q Consensus 2 ~I~~v~ik~~~~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k~~~ 54 (99)
.|.+|.|.++ +|||||+|.+.++|++|++.|||..+++++|+|.|+++.+
T Consensus 51 ~i~~v~i~~~---~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 100 (109)
T 1x4g_A 51 QIMEIRVFPE---KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESP 100 (109)
T ss_dssp CEEEEEEETT---TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCCCC
T ss_pred CeEEEEEeCC---CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCCCC
Confidence 5788988876 8999999999999999999999999999999999987654
No 82
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.19 E-value=1.5e-11 Score=78.26 Aligned_cols=53 Identities=11% Similarity=0.283 Sum_probs=47.9
Q ss_pred ceEEEEEeeCC---CCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecCCCC
Q psy11608 2 VMYFVDIKKQS---SASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKSLA 54 (99)
Q Consensus 2 ~I~~v~ik~~~---~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k~~~ 54 (99)
+|.+|.|.++. +++|||||+|.+.++|++|++.|||..++|++|+|.++++.+
T Consensus 52 ~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~k~ 107 (108)
T 2jrs_A 52 RIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTERT 107 (108)
T ss_dssp CEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEECSCSSC
T ss_pred CeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEcccCC
Confidence 58899998774 689999999999999999999999999999999999987653
No 83
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.19 E-value=2.8e-11 Score=75.59 Aligned_cols=53 Identities=13% Similarity=0.302 Sum_probs=47.7
Q ss_pred ceEEEEEeeC-CCCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecCCCC
Q psy11608 2 VMYFVDIKKQ-SSASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKSLA 54 (99)
Q Consensus 2 ~I~~v~ik~~-~~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k~~~ 54 (99)
.|.+|.|.++ +.++|||||+|.+.++|++|++.|||..+.+++|+|.++++.+
T Consensus 41 ~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~ 94 (103)
T 2d9p_A 41 TITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKE 94 (103)
T ss_dssp CEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECSSCC
T ss_pred CEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEecccc
Confidence 5788888887 4789999999999999999999999999999999999987643
No 84
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.19 E-value=3e-11 Score=77.80 Aligned_cols=51 Identities=20% Similarity=0.320 Sum_probs=46.6
Q ss_pred ceEEEEEeeCC--CCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecCC
Q psy11608 2 VMYFVDIKKQS--SASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKS 52 (99)
Q Consensus 2 ~I~~v~ik~~~--~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k~ 52 (99)
.|++|.|.++. +++|||||+|.+.++|++|++.|||..+.+++|+|.+++.
T Consensus 33 ~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 85 (116)
T 2fy1_A 33 PISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAKK 85 (116)
T ss_dssp CCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECCC
T ss_pred CEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCC
Confidence 47888998864 7899999999999999999999999999999999998764
No 85
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.19 E-value=9.5e-12 Score=74.92 Aligned_cols=47 Identities=15% Similarity=0.257 Sum_probs=41.0
Q ss_pred ceEEEEEeeC-CCCCCeEEEEeCCHHHHHHHHHhhCCeEeCCe-EEEEe
Q psy11608 2 VMYFVDIKKQ-SSASAFAFVQYTDIASVVRAMRAMDGEYVGHN-RVNLG 48 (99)
Q Consensus 2 ~I~~v~ik~~-~~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~-~i~v~ 48 (99)
+|.+|.|.++ ++++|||||+|.+.++|++|++.|||..++|+ +|+|+
T Consensus 33 ~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V~ 81 (81)
T 2krb_A 33 KITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRVN 81 (81)
T ss_dssp CEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCCC
T ss_pred CeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEeC
Confidence 5778887644 48999999999999999999999999999998 88763
No 86
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.19 E-value=2.4e-11 Score=76.05 Aligned_cols=53 Identities=15% Similarity=0.248 Sum_probs=47.5
Q ss_pred ceEEEEEeeCC--CCCCeEEEEeCCHHHHHHHHHhhCCeEeCC---eEEEEeecCCCC
Q psy11608 2 VMYFVDIKKQS--SASAFAFVQYTDIASVVRAMRAMDGEYVGH---NRVNLGYGKSLA 54 (99)
Q Consensus 2 ~I~~v~ik~~~--~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~---~~i~v~~~k~~~ 54 (99)
.|.+|.|.++. .++|||||+|.+.++|++|++.|||..+.+ ++|+|.++++.+
T Consensus 41 ~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~~a~~~~ 98 (105)
T 2dnh_A 41 VIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFADTDK 98 (105)
T ss_dssp CEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEEESCSSC
T ss_pred CeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEEECccCc
Confidence 58899999875 678999999999999999999999998887 999999987654
No 87
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.19 E-value=3.7e-11 Score=75.28 Aligned_cols=53 Identities=19% Similarity=0.297 Sum_probs=47.6
Q ss_pred ceEEEEEeeC----CCCCCeEEEEeCCHHHHHHHHHhh-CCeEeCCeEEEEeecCCCC
Q psy11608 2 VMYFVDIKKQ----SSASAFAFVQYTDIASVVRAMRAM-DGEYVGHNRVNLGYGKSLA 54 (99)
Q Consensus 2 ~I~~v~ik~~----~~s~gfaFV~F~~~~~a~~Ai~~m-~G~~i~~~~i~v~~~k~~~ 54 (99)
.|.+|.|.++ ++++|||||+|.+.++|++|++.| ||..+.+++|+|.++++.+
T Consensus 41 ~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v~~a~~~~ 98 (107)
T 2cph_A 41 ELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVLEWADSEV 98 (107)
T ss_dssp CEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEEEECCCCC
T ss_pred CeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEEEeCCCCC
Confidence 5888999766 378999999999999999999999 9999999999999987654
No 88
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.18 E-value=4.3e-11 Score=78.62 Aligned_cols=52 Identities=17% Similarity=0.294 Sum_probs=47.8
Q ss_pred ceEEEEEeeCC---CCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecCCC
Q psy11608 2 VMYFVDIKKQS---SASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKSL 53 (99)
Q Consensus 2 ~I~~v~ik~~~---~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k~~ 53 (99)
+|.+|.|.++. .++|||||+|.+.++|++|++.|||..+.+++|+|.|+++.
T Consensus 72 ~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~a~~~ 126 (129)
T 2kxn_B 72 PIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFSITK 126 (129)
T ss_dssp CEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESCCSSS
T ss_pred CeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCC
Confidence 58899998874 79999999999999999999999999999999999998764
No 89
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.18 E-value=3.9e-11 Score=76.98 Aligned_cols=45 Identities=9% Similarity=0.006 Sum_probs=40.0
Q ss_pred CCCceEEEEcCCCCCCChHHHHhhhcCCCceeeeeEEEEcCCCCCC
Q psy11608 52 SLATTCVWVDGVAGKCGTGEHNRVNLGYGKSLATTCVWVDGVAGKC 97 (99)
Q Consensus 52 ~~~~~~lfVg~l~~~~s~~~L~~~F~~fG~i~~~~~v~~d~~~g~~ 97 (99)
+.|.++|||+|||.++++++|+++|++||+|.++ .+..|+.||++
T Consensus 3 ~~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v-~i~~d~~tg~~ 47 (110)
T 3s8s_A 3 QIPLKEVTFARLNDNVRETFLKDMCRKYGEVEEV-EILLHPRTRKH 47 (110)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEE-EEEECTTTCCE
T ss_pred CCCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEE-EEEECCCCCce
Confidence 4567899999999999999999999999999886 66699998875
No 90
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.18 E-value=4.7e-11 Score=77.22 Aligned_cols=51 Identities=6% Similarity=0.100 Sum_probs=43.7
Q ss_pred ceEEEEEeeCCCCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecCCC
Q psy11608 2 VMYFVDIKKQSSASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKSL 53 (99)
Q Consensus 2 ~I~~v~ik~~~~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k~~ 53 (99)
.|..+.|.. .+++|||||+|.+.++|++|++.|||..+.|++|+|.+++..
T Consensus 55 ~v~~v~i~~-~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~~~ 105 (111)
T 2jvr_A 55 ETTFSSVNT-RDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDDNP 105 (111)
T ss_dssp CCSEEECSS-CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESCC-
T ss_pred eeEEEEEEc-CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCC
Confidence 366677743 268999999999999999999999999999999999988654
No 91
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.17 E-value=3.6e-11 Score=78.19 Aligned_cols=49 Identities=20% Similarity=0.368 Sum_probs=44.0
Q ss_pred ceEEEEEeeCCCCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecC
Q psy11608 2 VMYFVDIKKQSSASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGK 51 (99)
Q Consensus 2 ~I~~v~ik~~~~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k 51 (99)
.|++|.|.++ .++|||||+|.+.++|++|+++|||++++|++|++.|..
T Consensus 43 ~V~~v~i~~~-~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR~i~v~~~~ 91 (114)
T 3s6e_A 43 GVIHIYVDKN-SAQGNVYVKCPSIAAAIAAVNALHGRWFAGKMITAAYVP 91 (114)
T ss_dssp CCSEEEECTT-CTTCCEEEECSSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CEEEEEEecC-CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEEc
Confidence 4778888665 479999999999999999999999999999999998853
No 92
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.17 E-value=3.5e-11 Score=79.38 Aligned_cols=51 Identities=14% Similarity=0.283 Sum_probs=46.6
Q ss_pred eEEEEEeeCCCCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecCCC
Q psy11608 3 MYFVDIKKQSSASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKSL 53 (99)
Q Consensus 3 I~~v~ik~~~~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k~~ 53 (99)
+.+|.++..++++|||||+|.+.++|++|++.|||..+.|++|+|.++++.
T Consensus 80 ~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~ 130 (143)
T 3egn_A 80 MFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMVVQFARSA 130 (143)
T ss_dssp HCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEECEEEECCCS
T ss_pred eeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECCCC
Confidence 456777888899999999999999999999999999999999999998754
No 93
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.17 E-value=4.8e-11 Score=78.14 Aligned_cols=53 Identities=17% Similarity=0.262 Sum_probs=48.0
Q ss_pred ceEEEEEeeCC---CCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecCCCC
Q psy11608 2 VMYFVDIKKQS---SASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKSLA 54 (99)
Q Consensus 2 ~I~~v~ik~~~---~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k~~~ 54 (99)
.|++|.|.++. .++|||||+|.+.++|++|++.|||..+.+++|+|.++++.+
T Consensus 68 ~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 123 (139)
T 1u6f_A 68 PIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALAASGH 123 (139)
T ss_dssp CEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEESSCCC
T ss_pred CeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCC
Confidence 58899998874 579999999999999999999999999999999999987653
No 94
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.17 E-value=5.6e-11 Score=73.60 Aligned_cols=50 Identities=26% Similarity=0.428 Sum_probs=45.4
Q ss_pred ceEEEEEeeCCCCCCeEEEEeCCHHHHHHHHHhhCCeEeC--CeEEEEeecCCCC
Q psy11608 2 VMYFVDIKKQSSASAFAFVQYTDIASVVRAMRAMDGEYVG--HNRVNLGYGKSLA 54 (99)
Q Consensus 2 ~I~~v~ik~~~~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~--~~~i~v~~~k~~~ 54 (99)
.|++|.+.++ +|||||+|.+.++|++|++.|||..+. +++|+|.|+++.+
T Consensus 43 ~v~~v~~~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a~~~~ 94 (97)
T 1why_A 43 SIRTIDHVKG---DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAKSGP 94 (97)
T ss_dssp CEEEEEECSS---SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEECCCCC
T ss_pred CeeEEEEeCC---CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEECCCCC
Confidence 5788888864 899999999999999999999999999 9999999998764
No 95
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.16 E-value=7.5e-11 Score=76.79 Aligned_cols=49 Identities=14% Similarity=0.205 Sum_probs=44.4
Q ss_pred ceEEEEEeeC---CCCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeec
Q psy11608 2 VMYFVDIKKQ---SSASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYG 50 (99)
Q Consensus 2 ~I~~v~ik~~---~~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~ 50 (99)
.|++|.|.++ ++++|||||+|.+.++|++|++.|||..+++++|+|.++
T Consensus 89 ~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~A 140 (140)
T 2ku7_A 89 DITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 140 (140)
T ss_dssp CEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC-
T ss_pred CEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEeC
Confidence 5888998877 478999999999999999999999999999999999874
No 96
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.16 E-value=6.5e-11 Score=80.25 Aligned_cols=51 Identities=12% Similarity=0.180 Sum_probs=46.7
Q ss_pred ceEEEEEeeC---CCCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecCC
Q psy11608 2 VMYFVDIKKQ---SSASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKS 52 (99)
Q Consensus 2 ~I~~v~ik~~---~~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k~ 52 (99)
.|.+|.|.+| ++++|||||+|.+.++|++|++.|||..++|++|+|.++.+
T Consensus 83 ~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~a~~ 136 (156)
T 3n9u_C 83 DVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRPATR 136 (156)
T ss_dssp CEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEECCH
T ss_pred cEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEEcCC
Confidence 5889999877 37899999999999999999999999999999999998753
No 97
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.15 E-value=7.7e-11 Score=78.53 Aligned_cols=52 Identities=25% Similarity=0.328 Sum_probs=47.4
Q ss_pred ceEEEEEeeC---CCCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecCCC
Q psy11608 2 VMYFVDIKKQ---SSASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKSL 53 (99)
Q Consensus 2 ~I~~v~ik~~---~~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k~~ 53 (99)
.|.+|.|.++ ++++|||||+|.+.++|++|++.|||..+++++|+|.++++.
T Consensus 96 ~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 150 (158)
T 2kn4_A 96 RVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYG 150 (158)
T ss_dssp CEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECCS
T ss_pred CeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence 5788999887 379999999999999999999999999999999999998753
No 98
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.15 E-value=3.3e-11 Score=74.70 Aligned_cols=52 Identities=17% Similarity=0.381 Sum_probs=46.2
Q ss_pred ceE-EEEEeeCC---CCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeE----EEEeecCCC
Q psy11608 2 VMY-FVDIKKQS---SASAFAFVQYTDIASVVRAMRAMDGEYVGHNR----VNLGYGKSL 53 (99)
Q Consensus 2 ~I~-~v~ik~~~---~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~----i~v~~~k~~ 53 (99)
+|. +|.|.++. +++|||||+|.+.++|++|++.|||..+.+++ |+|.|+++.
T Consensus 35 ~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l~v~~a~~~ 94 (99)
T 2div_A 35 ETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATYS 94 (99)
T ss_dssp CCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEECCEEETTCC
T ss_pred CcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeEEEeecCCC
Confidence 466 88888874 78899999999999999999999999999988 999998753
No 99
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.15 E-value=8.3e-11 Score=70.85 Aligned_cols=47 Identities=17% Similarity=0.298 Sum_probs=43.1
Q ss_pred ceEEEEEeeCCCCCCeEEEEeCCHHHHHHHHHhh-CCeEeCCeEEEEeecC
Q psy11608 2 VMYFVDIKKQSSASAFAFVQYTDIASVVRAMRAM-DGEYVGHNRVNLGYGK 51 (99)
Q Consensus 2 ~I~~v~ik~~~~s~gfaFV~F~~~~~a~~Ai~~m-~G~~i~~~~i~v~~~k 51 (99)
+|.+|.+.+ ++|||||+|.+.++|++|++.| +|..+.+++|+|.|++
T Consensus 38 ~i~~~~~~~---~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ak 85 (85)
T 2ytc_A 38 EIRTITVVQ---RQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWGR 85 (85)
T ss_dssp CEEEEEEEG---GGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEECC
T ss_pred CEeEEEEEC---CCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEecC
Confidence 578888886 4899999999999999999999 9999999999999875
No 100
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.15 E-value=3.4e-11 Score=74.82 Aligned_cols=46 Identities=17% Similarity=0.295 Sum_probs=41.8
Q ss_pred EEEeeC---CCCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecC
Q psy11608 6 VDIKKQ---SSASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGK 51 (99)
Q Consensus 6 v~ik~~---~~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k 51 (99)
|.|.++ ++++|||||+|.+.++|++|++.|||..++|++|+|.+++
T Consensus 51 v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~A~ 99 (99)
T 2la6_A 51 INLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNPIKVSFAT 99 (99)
T ss_dssp EEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred EEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEecC
Confidence 777776 3789999999999999999999999999999999999874
No 101
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.15 E-value=5.9e-11 Score=73.88 Aligned_cols=50 Identities=24% Similarity=0.364 Sum_probs=43.7
Q ss_pred EEEEeeCC---CCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecCCCC
Q psy11608 5 FVDIKKQS---SASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKSLA 54 (99)
Q Consensus 5 ~v~ik~~~---~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k~~~ 54 (99)
+|.+.++. +++|||||+|.+.++|++|++.|||..+.+++|+|.++++.+
T Consensus 41 ~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~ 93 (102)
T 2fc8_A 41 RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKG 93 (102)
T ss_dssp EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCCC
T ss_pred EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecCCC
Confidence 45565553 788999999999999999999999999999999999987654
No 102
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.14 E-value=1.7e-11 Score=74.10 Aligned_cols=50 Identities=10% Similarity=0.129 Sum_probs=45.0
Q ss_pred ceEEEEEeeCC---CCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecC
Q psy11608 2 VMYFVDIKKQS---SASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGK 51 (99)
Q Consensus 2 ~I~~v~ik~~~---~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k 51 (99)
.|.+|.|..+. +++|||||+|.+.++|++|++.|||..+.++.+++.+++
T Consensus 31 ~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~~ 83 (85)
T 1x4e_A 31 KIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGPS 83 (85)
T ss_dssp CEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCCC
T ss_pred CeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCCC
Confidence 58889988873 789999999999999999999999999999999887754
No 103
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.14 E-value=1.2e-10 Score=73.78 Aligned_cols=51 Identities=14% Similarity=0.258 Sum_probs=46.2
Q ss_pred ceEEEEEeeCC--CCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecCC
Q psy11608 2 VMYFVDIKKQS--SASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKS 52 (99)
Q Consensus 2 ~I~~v~ik~~~--~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k~ 52 (99)
.|.+|.|.++. +++|||||+|.+.++|++|++.|||..+.+++|+|.+++.
T Consensus 41 ~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 93 (114)
T 2do0_A 41 VVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMDER 93 (114)
T ss_dssp CEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEccc
Confidence 57888888875 6789999999999999999999999999999999998763
No 104
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.14 E-value=1.9e-11 Score=74.55 Aligned_cols=51 Identities=14% Similarity=0.230 Sum_probs=44.4
Q ss_pred ceEEEEEeeC---CCCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecCCC
Q psy11608 2 VMYFVDIKKQ---SSASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKSL 53 (99)
Q Consensus 2 ~I~~v~ik~~---~~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k~~ 53 (99)
+|.+|.|.++ ++++|||||+|.+.+ |++|++.|||..++|++|+|.++.+.
T Consensus 27 ~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 27 KVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp CCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred CEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 5788899887 478999999999999 99999999999999999999998654
No 105
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.14 E-value=3.2e-11 Score=75.36 Aligned_cols=53 Identities=21% Similarity=0.264 Sum_probs=47.5
Q ss_pred ceEEEEEeeCC--CCCCeEEEEeCCHHHHHHHHHhhCCeE-eCCeEEEEeecCCCC
Q psy11608 2 VMYFVDIKKQS--SASAFAFVQYTDIASVVRAMRAMDGEY-VGHNRVNLGYGKSLA 54 (99)
Q Consensus 2 ~I~~v~ik~~~--~s~gfaFV~F~~~~~a~~Ai~~m~G~~-i~~~~i~v~~~k~~~ 54 (99)
.|.+|.|.++. .++|||||+|.+.++|++|++.|||.. +.+++|+|.++++.+
T Consensus 36 ~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~~a~~~~ 91 (104)
T 2dhg_A 36 SCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAIPKA 91 (104)
T ss_dssp TEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCCBCCCCC
T ss_pred CeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEEEccCCC
Confidence 58889998874 789999999999999999999999999 999999999986543
No 106
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.14 E-value=2.5e-11 Score=75.74 Aligned_cols=53 Identities=15% Similarity=0.287 Sum_probs=47.2
Q ss_pred ceEEEEEeeCC---CCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecCCCC
Q psy11608 2 VMYFVDIKKQS---SASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKSLA 54 (99)
Q Consensus 2 ~I~~v~ik~~~---~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k~~~ 54 (99)
.|.+|.|.++. .++|||||+|.+.++|++|++.|||..+.+++|+|.++++..
T Consensus 34 ~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 89 (104)
T 1p1t_A 34 PVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAASEK 89 (104)
T ss_dssp CCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETTCTT
T ss_pred CeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCCCcc
Confidence 47788888774 679999999999999999999999999999999999987653
No 107
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.14 E-value=4.9e-11 Score=77.92 Aligned_cols=50 Identities=16% Similarity=0.224 Sum_probs=44.9
Q ss_pred ceEEEEEeeCC-------CCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecC
Q psy11608 2 VMYFVDIKKQS-------SASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGK 51 (99)
Q Consensus 2 ~I~~v~ik~~~-------~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k 51 (99)
+|++|.|.++. .++||+||+|.++++|.+|+++|||++++|++|++.|..
T Consensus 51 ~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~GR~i~v~~~~ 107 (118)
T 3ue2_A 51 AVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 107 (118)
T ss_dssp CEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECCcEEEEEEcC
Confidence 58899998874 357999999999999999999999999999999998764
No 108
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.13 E-value=5.5e-11 Score=74.48 Aligned_cols=53 Identities=17% Similarity=0.254 Sum_probs=46.9
Q ss_pred ceEEEEEeeCC---CCCCeEEEEeCCHHHHHHHHHhhCCeEe---CCeEEEEeecCCCC
Q psy11608 2 VMYFVDIKKQS---SASAFAFVQYTDIASVVRAMRAMDGEYV---GHNRVNLGYGKSLA 54 (99)
Q Consensus 2 ~I~~v~ik~~~---~s~gfaFV~F~~~~~a~~Ai~~m~G~~i---~~~~i~v~~~k~~~ 54 (99)
.|.+|.|.++. +++|||||+|.+.++|++|++.|||..+ .+++|+|.++++.+
T Consensus 39 ~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~~~~ 97 (106)
T 2dgp_A 39 KIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPADSES 97 (106)
T ss_dssp CCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEEEECCCCS
T ss_pred CeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEEEEECCccc
Confidence 57888998874 6999999999999999999999999987 88999999987643
No 109
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.13 E-value=2.3e-11 Score=75.23 Aligned_cols=43 Identities=16% Similarity=0.266 Sum_probs=39.3
Q ss_pred CCCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecCCCC
Q psy11608 12 SSASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKSLA 54 (99)
Q Consensus 12 ~~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k~~~ 54 (99)
++++|||||+|.+.++|++|++.|||..+++++|+|.+++..+
T Consensus 54 g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~~ 96 (98)
T 2cqp_A 54 GMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLGSGPS 96 (98)
T ss_dssp SCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEESSCSS
T ss_pred CCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEcCCCC
Confidence 3689999999999999999999999999999999999987543
No 110
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.13 E-value=1.1e-10 Score=75.17 Aligned_cols=50 Identities=6% Similarity=0.052 Sum_probs=44.3
Q ss_pred ceEEEEEeeCCCCCCeEEEEeCCHHHHHHHHHhhCC--eEeCCeEEEEeecCCCC
Q psy11608 2 VMYFVDIKKQSSASAFAFVQYTDIASVVRAMRAMDG--EYVGHNRVNLGYGKSLA 54 (99)
Q Consensus 2 ~I~~v~ik~~~~s~gfaFV~F~~~~~a~~Ai~~m~G--~~i~~~~i~v~~~k~~~ 54 (99)
.|++|.|.++ ||||||+|.+.++|++|++.|++ ..+.|++|+|.|+++.+
T Consensus 42 ~V~~v~i~~~---kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A~~~~ 93 (105)
T 1sjq_A 42 KVTNLLMLKG---KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHKE 93 (105)
T ss_dssp CEEEEEEETT---TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCCSSSS
T ss_pred CEEEEEEEcC---CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcCCCC
Confidence 5889999875 89999999999999999998864 78999999999987643
No 111
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.13 E-value=1.4e-10 Score=74.82 Aligned_cols=52 Identities=13% Similarity=0.145 Sum_probs=46.6
Q ss_pred ceEEEEEeeCC--CCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecCCC
Q psy11608 2 VMYFVDIKKQS--SASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKSL 53 (99)
Q Consensus 2 ~I~~v~ik~~~--~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k~~ 53 (99)
.|.+|.|.++. +++|||||+|.+.++|++|++.|||..+++++|+|.++...
T Consensus 61 ~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 114 (124)
T 2kt5_A 61 TLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVASQ 114 (124)
T ss_dssp CCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEECCT
T ss_pred CeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeCCC
Confidence 47788888764 78999999999999999999999999999999999998653
No 112
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.13 E-value=5.5e-11 Score=73.28 Aligned_cols=46 Identities=13% Similarity=0.302 Sum_probs=41.9
Q ss_pred eeCCCCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecCCCC
Q psy11608 9 KKQSSASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKSLA 54 (99)
Q Consensus 9 k~~~~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k~~~ 54 (99)
+..+.++|||||+|.+.++|++|++.|||..+.|++|+|.++++.+
T Consensus 47 ~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 92 (96)
T 1fjc_A 47 SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKG 92 (96)
T ss_dssp EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECSSSC
T ss_pred CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCCCC
Confidence 5566899999999999999999999999999999999999987654
No 113
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.13 E-value=5.3e-11 Score=74.40 Aligned_cols=50 Identities=16% Similarity=0.472 Sum_probs=44.8
Q ss_pred eEEEEEeeC----CCCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecCCC
Q psy11608 3 MYFVDIKKQ----SSASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKSL 53 (99)
Q Consensus 3 I~~v~ik~~----~~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k~~ 53 (99)
|.+|.|.++ ++++|||||+|.+.++|++|+ .|||..++|++|+|.++++.
T Consensus 45 i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~~a~~~ 98 (100)
T 2j76_E 45 ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVDVADQA 98 (100)
T ss_dssp EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCEECCCS
T ss_pred CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEEeccCC
Confidence 678888775 368999999999999999999 99999999999999998764
No 114
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.13 E-value=7.2e-11 Score=82.36 Aligned_cols=51 Identities=20% Similarity=0.346 Sum_probs=46.8
Q ss_pred ceEEEEEeeCC-CCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecCC
Q psy11608 2 VMYFVDIKKQS-SASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKS 52 (99)
Q Consensus 2 ~I~~v~ik~~~-~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k~ 52 (99)
.|++|.|.+|. +++|||||+|.+.++|++|+++|||..++|++|+|.++++
T Consensus 129 ~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~~ 180 (213)
T 4f02_A 129 NILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 180 (213)
T ss_dssp CEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeeccCCCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcCC
Confidence 57888887775 6899999999999999999999999999999999999875
No 115
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.13 E-value=8.5e-11 Score=73.13 Aligned_cols=48 Identities=13% Similarity=0.209 Sum_probs=43.2
Q ss_pred ceEEEEEeeCCCCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecCC
Q psy11608 2 VMYFVDIKKQSSASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKS 52 (99)
Q Consensus 2 ~I~~v~ik~~~~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k~ 52 (99)
.|.+|.|. +++|||||+|.+.++|++|++.|||..+++++|+|.|+++
T Consensus 53 ~i~~~~~~---~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 100 (101)
T 2la4_A 53 FILDFKHY---PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGKE 100 (101)
T ss_dssp CCSEEEEE---TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCCC
T ss_pred CEEEEEEe---cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEeccC
Confidence 46677776 5799999999999999999999999999999999999875
No 116
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.12 E-value=8.3e-11 Score=74.53 Aligned_cols=50 Identities=16% Similarity=0.239 Sum_probs=44.6
Q ss_pred EEEEeeC---CCCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecCCCC
Q psy11608 5 FVDIKKQ---SSASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKSLA 54 (99)
Q Consensus 5 ~v~ik~~---~~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k~~~ 54 (99)
+|.|..+ ++++|||||+|.+.++|++|++.|||..+.+++|+|.++++.+
T Consensus 52 ~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 104 (113)
T 2cpe_A 52 MIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQGSKLKVSLARKKP 104 (113)
T ss_dssp SEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEETTEECEEECSSCCC
T ss_pred CEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccCCCEEEEEECCCCC
Confidence 5777776 3789999999999999999999999999999999999987643
No 117
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.12 E-value=5.7e-11 Score=76.62 Aligned_cols=52 Identities=10% Similarity=0.210 Sum_probs=46.9
Q ss_pred ceEEEEEeeCC---CCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecCCC
Q psy11608 2 VMYFVDIKKQS---SASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKSL 53 (99)
Q Consensus 2 ~I~~v~ik~~~---~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k~~ 53 (99)
.|.+|.|..+. .++|||||+|.+.++|++|++.|||..+.+++|+|.|+++.
T Consensus 48 ~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 102 (126)
T 3ex7_B 48 EIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCFVR 102 (126)
T ss_dssp CEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEESEES
T ss_pred CeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEecCC
Confidence 58889988774 67999999999999999999999999999999999998643
No 118
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.12 E-value=9.3e-11 Score=77.89 Aligned_cols=50 Identities=24% Similarity=0.377 Sum_probs=46.1
Q ss_pred ceEEEEEeeCCCCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecCCC
Q psy11608 2 VMYFVDIKKQSSASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKSL 53 (99)
Q Consensus 2 ~I~~v~ik~~~~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k~~ 53 (99)
.|.+|.|.++ ++|||||+|.+.++|++|++.|||..+++++|+|.++++.
T Consensus 99 ~i~~v~i~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 148 (150)
T 2i2y_A 99 PLRSVWVARN--PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGE 148 (150)
T ss_dssp CEEEEEECSS--SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCC
T ss_pred CEEEEEEeeC--CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCC
Confidence 5788888876 7999999999999999999999999999999999998764
No 119
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.12 E-value=1.9e-10 Score=73.22 Aligned_cols=50 Identities=14% Similarity=0.183 Sum_probs=45.7
Q ss_pred ceEEEEEeeCC---CCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecCC
Q psy11608 2 VMYFVDIKKQS---SASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKS 52 (99)
Q Consensus 2 ~I~~v~ik~~~---~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k~ 52 (99)
.|.+|.|.++. +++|||||+|.+.++|++|++.|++ .+.+++|+|.+++.
T Consensus 43 ~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~a~~ 95 (116)
T 2cqd_A 43 DIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNLAYL 95 (116)
T ss_dssp CEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEESTT
T ss_pred CeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEEccc
Confidence 58899998874 7999999999999999999999999 89999999999854
No 120
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.12 E-value=1.4e-10 Score=77.49 Aligned_cols=53 Identities=19% Similarity=0.317 Sum_probs=48.1
Q ss_pred ceEEEEEeeCC---CCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecCCCC
Q psy11608 2 VMYFVDIKKQS---SASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKSLA 54 (99)
Q Consensus 2 ~I~~v~ik~~~---~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k~~~ 54 (99)
.|.+|.|.++. .++|||||+|.+.++|++|++.|||..+.+++|+|.|+++.+
T Consensus 65 ~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 120 (156)
T 1h2v_Z 65 DIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWDAGFK 120 (156)
T ss_dssp CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEESCCC
T ss_pred CeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCC
Confidence 58899998884 688999999999999999999999999999999999987643
No 121
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.12 E-value=2.6e-11 Score=71.65 Aligned_cols=48 Identities=10% Similarity=0.070 Sum_probs=42.5
Q ss_pred ceEEEEEeeCC---CCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeec
Q psy11608 2 VMYFVDIKKQS---SASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYG 50 (99)
Q Consensus 2 ~I~~v~ik~~~---~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~ 50 (99)
+|.+|.|.+++ +++|||||+|.+.++|++|++ |||..++|++|+|.++
T Consensus 25 ~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 25 KVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 56788887764 789999999999999999998 9999999999998864
No 122
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.12 E-value=8.9e-11 Score=71.69 Aligned_cols=47 Identities=9% Similarity=0.085 Sum_probs=41.7
Q ss_pred eEEEEEeeCCCCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecCC
Q psy11608 3 MYFVDIKKQSSASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKS 52 (99)
Q Consensus 3 I~~v~ik~~~~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k~ 52 (99)
|.+|.|. +++|||||+|.+.++|++|++.|||..+++++|+|.+++.
T Consensus 31 v~~~~i~---~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 77 (88)
T 1wg1_A 31 LKYCYVD---RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPT 77 (88)
T ss_dssp CCCEEEE---GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred eEEEEEe---CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCC
Confidence 4556552 7899999999999999999999999999999999999864
No 123
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.12 E-value=1.7e-10 Score=74.15 Aligned_cols=51 Identities=16% Similarity=0.236 Sum_probs=46.1
Q ss_pred ceEEEEEeeC---CCCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecCCC
Q psy11608 2 VMYFVDIKKQ---SSASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKSL 53 (99)
Q Consensus 2 ~I~~v~ik~~---~~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k~~ 53 (99)
.|++|.|.++ +.++|||||+|.+.++|++|+ +|||..+++++|+|.++++.
T Consensus 62 ~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~~ 115 (124)
T 2jwn_A 62 SINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKRTN 115 (124)
T ss_dssp CEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESSCC
T ss_pred CEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCCC
Confidence 5888999876 378999999999999999999 89999999999999998753
No 124
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.12 E-value=1.2e-10 Score=73.88 Aligned_cols=50 Identities=12% Similarity=0.200 Sum_probs=43.8
Q ss_pred EEEEEeeCCCCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecCCCC
Q psy11608 4 YFVDIKKQSSASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKSLA 54 (99)
Q Consensus 4 ~~v~ik~~~~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k~~~ 54 (99)
..+++. .++++|||||+|.+.++|++|++.|||..+.+++|+|.|+++.+
T Consensus 57 ~~~~~~-~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~~ 106 (115)
T 2cpx_A 57 IQFRMM-TGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFGKNKK 106 (115)
T ss_dssp CEEEEE-CSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEECCCCS
T ss_pred EEEEcC-CCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEccCCC
Confidence 445555 67899999999999999999999999999999999999987643
No 125
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.12 E-value=1.3e-10 Score=73.83 Aligned_cols=50 Identities=18% Similarity=0.246 Sum_probs=45.4
Q ss_pred ceEEEEEeeCC---CCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecCC
Q psy11608 2 VMYFVDIKKQS---SASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKS 52 (99)
Q Consensus 2 ~I~~v~ik~~~---~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k~ 52 (99)
.|.+|.|.++. +++|||||+|.+.++|++|+ .|||..+.+++|+|.++++
T Consensus 51 ~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~ 103 (114)
T 2cq4_A 51 KVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQA 103 (114)
T ss_dssp CEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHHH
T ss_pred CEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecCC
Confidence 58899998774 68999999999999999999 9999999999999998753
No 126
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.12 E-value=2.8e-10 Score=70.97 Aligned_cols=47 Identities=26% Similarity=0.304 Sum_probs=42.6
Q ss_pred ceEEEEEeeCCCCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecCCC
Q psy11608 2 VMYFVDIKKQSSASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKSL 53 (99)
Q Consensus 2 ~I~~v~ik~~~~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k~~ 53 (99)
.|.+|.|+ +|||||+|.+.++|++|++.|||..++|++|+|.++++.
T Consensus 49 ~v~~v~i~-----~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 95 (97)
T 2xnq_A 49 HIMQINIK-----NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVSSSN 95 (97)
T ss_dssp CEEEEEEC-----SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEECCCC
T ss_pred CEEEEEEe-----CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecCCC
Confidence 47788884 799999999999999999999999999999999998754
No 127
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.11 E-value=1.3e-10 Score=70.45 Aligned_cols=44 Identities=11% Similarity=0.202 Sum_probs=38.6
Q ss_pred CCceEEEEcCCCCCCChHHHHhhhcCCCceeeeeEEEEcCCCCCC
Q psy11608 53 LATTCVWVDGVAGKCGTGEHNRVNLGYGKSLATTCVWVDGVAGKC 97 (99)
Q Consensus 53 ~~~~~lfVg~l~~~~s~~~L~~~F~~fG~i~~~~~v~~d~~~g~~ 97 (99)
.+.++|||+|||+++++++|+++|++||+|.++ .+..|+.+|++
T Consensus 9 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v-~i~~~~~~g~~ 52 (87)
T 3s7r_A 9 EDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDC-TIKMDPNTGRS 52 (87)
T ss_dssp SCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEE-EEEECTTTCCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEE-EEeecCCCCcc
Confidence 456899999999999999999999999999876 56689887764
No 128
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.11 E-value=1.5e-10 Score=76.01 Aligned_cols=50 Identities=16% Similarity=0.294 Sum_probs=46.1
Q ss_pred ceEEEEEeeCC---CCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecC
Q psy11608 2 VMYFVDIKKQS---SASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGK 51 (99)
Q Consensus 2 ~I~~v~ik~~~---~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k 51 (99)
.|.+|.+.++. .++|||||+|.+.++|++|++.|||..++|++|+|.|++
T Consensus 113 ~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~ 165 (166)
T 3md3_A 113 SYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAA 165 (166)
T ss_dssp TEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESC
T ss_pred CeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEecC
Confidence 57889998773 789999999999999999999999999999999999985
No 129
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.11 E-value=2.2e-10 Score=73.71 Aligned_cols=49 Identities=10% Similarity=0.095 Sum_probs=43.1
Q ss_pred ceEEEEEeeCC--CCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecC
Q psy11608 2 VMYFVDIKKQS--SASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGK 51 (99)
Q Consensus 2 ~I~~v~ik~~~--~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k 51 (99)
.|.+|.|.++. +++|||||+|.+.++|++|+ .|||..++++.|+|..+.
T Consensus 41 ~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~ 91 (109)
T 2dnn_A 41 RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPAT 91 (109)
T ss_dssp CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECC
T ss_pred CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 36788888764 79999999999999999999 799999999999997654
No 130
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.11 E-value=2.5e-10 Score=70.98 Aligned_cols=49 Identities=8% Similarity=0.305 Sum_probs=42.4
Q ss_pred EEEeeC--CCCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecCCCC
Q psy11608 6 VDIKKQ--SSASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKSLA 54 (99)
Q Consensus 6 v~ik~~--~~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k~~~ 54 (99)
|.|.++ ++++|||||+|.+.++|++|++.|||..+.+++|+|.++++.+
T Consensus 42 v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 92 (101)
T 2fc9_A 42 IKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRG 92 (101)
T ss_dssp EECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEECSSCC
T ss_pred EEEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEcCCCC
Confidence 344443 4789999999999999999999999999999999999987653
No 131
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.10 E-value=3.4e-11 Score=73.97 Aligned_cols=40 Identities=15% Similarity=0.222 Sum_probs=37.5
Q ss_pred CCCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecC
Q psy11608 12 SSASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGK 51 (99)
Q Consensus 12 ~~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k 51 (99)
++++|||||+|.+.++|++|++.|||..+.+++|+|.++.
T Consensus 54 g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~ 93 (95)
T 2ek1_A 54 GMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPS 93 (95)
T ss_dssp SCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEecc
Confidence 3789999999999999999999999999999999998875
No 132
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.10 E-value=2.1e-10 Score=70.11 Aligned_cols=48 Identities=19% Similarity=0.235 Sum_probs=43.7
Q ss_pred ceEEEEEeeCCCCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecCCCC
Q psy11608 2 VMYFVDIKKQSSASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKSLA 54 (99)
Q Consensus 2 ~I~~v~ik~~~~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k~~~ 54 (99)
.|.+|.|. +|||||+|.+.++|++|++.|||..+.+++|+|.++++.+
T Consensus 34 ~i~~v~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 81 (90)
T 2dnq_A 34 KVLECDII-----KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKNKS 81 (90)
T ss_dssp CEEEEEEE-----TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSCCC
T ss_pred CEEEEEEE-----CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCCCC
Confidence 57888887 6999999999999999999999999999999999987653
No 133
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.10 E-value=9.2e-11 Score=72.84 Aligned_cols=55 Identities=15% Similarity=0.090 Sum_probs=46.7
Q ss_pred ceEEEEEeeCCCCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecCCCCceEEEEc
Q psy11608 2 VMYFVDIKKQSSASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKSLATTCVWVD 61 (99)
Q Consensus 2 ~I~~v~ik~~~~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k~~~~~~lfVg 61 (99)
+|.+|.|.+ ++|||||+|.+.++|++|++.|||..+.+++|+|.++++.+ .+++|
T Consensus 41 ~i~~v~~~~---~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~--~~~~g 95 (99)
T 2cpj_A 41 KAGEVFIHK---DKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHSA--SLTSG 95 (99)
T ss_dssp CCSEEEEET---TTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSCCS--CCCCC
T ss_pred CeEEEEEec---CCCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCCCC--CCCCC
Confidence 467788875 48999999999999999999999999999999999987643 34444
No 134
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.10 E-value=1e-10 Score=74.31 Aligned_cols=49 Identities=10% Similarity=0.200 Sum_probs=44.7
Q ss_pred ceEEEEEeeCC--CCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecC
Q psy11608 2 VMYFVDIKKQS--SASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGK 51 (99)
Q Consensus 2 ~I~~v~ik~~~--~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k 51 (99)
+|.+|.|.++. +++|||||+|.+.++|++|++ ++|..+.|++|+|.+++
T Consensus 37 ~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~~ 87 (103)
T 1s79_A 37 QVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFKD 87 (103)
T ss_dssp CEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEHH
T ss_pred CEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEch
Confidence 68999999875 799999999999999999999 99999999999998753
No 135
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.10 E-value=3.7e-10 Score=71.40 Aligned_cols=48 Identities=10% Similarity=0.215 Sum_probs=44.2
Q ss_pred ceEEEEEeeCCCCCCeEEEEeCCHHHHHHHHHhhCCeEeCC-----eEEEEeecCCC
Q psy11608 2 VMYFVDIKKQSSASAFAFVQYTDIASVVRAMRAMDGEYVGH-----NRVNLGYGKSL 53 (99)
Q Consensus 2 ~I~~v~ik~~~~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~-----~~i~v~~~k~~ 53 (99)
.|.+|.|.++ |||||+|.+.++|++|++.|||..+.+ ++|+|.++++.
T Consensus 41 ~i~~~~i~~~----g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~~a~~~ 93 (108)
T 1x4c_A 41 DVCYADVYRD----GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDGPR 93 (108)
T ss_dssp CEEEEEEETT----TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEEESSCC
T ss_pred CEeEEEEecC----CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEEeCCCC
Confidence 5888999887 999999999999999999999999999 99999998764
No 136
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.10 E-value=2.5e-10 Score=76.27 Aligned_cols=46 Identities=13% Similarity=0.302 Sum_probs=41.9
Q ss_pred eeCCCCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecCCCC
Q psy11608 9 KKQSSASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKSLA 54 (99)
Q Consensus 9 k~~~~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k~~~ 54 (99)
..+++++|||||+|.+.++|.+|++.|||..++|++|+|.|+++.|
T Consensus 130 ~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~k~ 175 (175)
T 1fje_B 130 SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKG 175 (175)
T ss_dssp CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECSSCC
T ss_pred cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecCCCC
Confidence 4456899999999999999999999999999999999999997653
No 137
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.10 E-value=1.4e-10 Score=72.57 Aligned_cols=51 Identities=14% Similarity=0.147 Sum_probs=46.4
Q ss_pred ceEEEEEeeCC---CCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecCCC
Q psy11608 2 VMYFVDIKKQS---SASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKSL 53 (99)
Q Consensus 2 ~I~~v~ik~~~---~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k~~ 53 (99)
.|.+|.|.++. .++|||||+|.+.++|++|++. ||..+.+++|+|.++++.
T Consensus 42 ~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~a~~~ 95 (105)
T 2dh8_A 42 EVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKPCTPR 95 (105)
T ss_dssp CEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCCSCCS
T ss_pred CeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEccCC
Confidence 58899999874 7889999999999999999999 999999999999998754
No 138
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.09 E-value=3.9e-10 Score=71.67 Aligned_cols=52 Identities=12% Similarity=0.148 Sum_probs=46.2
Q ss_pred ceEEEEEeeC---CCCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecCCCC
Q psy11608 2 VMYFVDIKKQ---SSASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKSLA 54 (99)
Q Consensus 2 ~I~~v~ik~~---~~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k~~~ 54 (99)
.|.+|.|.++ ++++|||||+|.+.++|++|++.+ |..++|++|+|.++.+.+
T Consensus 51 ~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~~a~~~~ 105 (109)
T 2rs2_A 51 EVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPKVAFPRR 105 (109)
T ss_dssp CEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEEECCCCC
T ss_pred CeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEEEccCCC
Confidence 5889999887 478999999999999999999987 599999999999987654
No 139
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.09 E-value=1.5e-10 Score=72.79 Aligned_cols=51 Identities=16% Similarity=0.210 Sum_probs=45.0
Q ss_pred eEEEEEe-eCC---CCCCeEEEEeCCHHHHHHHHHhhC--CeEeCCeEEEEeecCCC
Q psy11608 3 MYFVDIK-KQS---SASAFAFVQYTDIASVVRAMRAMD--GEYVGHNRVNLGYGKSL 53 (99)
Q Consensus 3 I~~v~ik-~~~---~s~gfaFV~F~~~~~a~~Ai~~m~--G~~i~~~~i~v~~~k~~ 53 (99)
|.+|.|. ++. +++|||||+|.+.++|++|++.|| +..+.+++|+|.|+++.
T Consensus 36 v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~V~~a~~~ 92 (109)
T 2dis_A 36 VLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPE 92 (109)
T ss_dssp EEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEEEESCSS
T ss_pred ceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEEEEEcCCC
Confidence 7888887 453 789999999999999999999996 58999999999998764
No 140
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.09 E-value=2.8e-10 Score=72.46 Aligned_cols=52 Identities=17% Similarity=0.199 Sum_probs=46.8
Q ss_pred ceEEEEEeeCC---CCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecCCCC
Q psy11608 2 VMYFVDIKKQS---SASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKSLA 54 (99)
Q Consensus 2 ~I~~v~ik~~~---~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k~~~ 54 (99)
.|.+|.|.++. .++|||||+|.+.++|++|++. +|..+.+++|+|.++++.+
T Consensus 53 ~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~~~~ 107 (116)
T 1x4b_A 53 KLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAVARE 107 (116)
T ss_dssp CCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCSSCC
T ss_pred CEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECCCCc
Confidence 57889998874 7899999999999999999998 9999999999999987653
No 141
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.09 E-value=4.2e-10 Score=71.45 Aligned_cols=50 Identities=8% Similarity=0.088 Sum_probs=43.6
Q ss_pred ceEEEEEeeCCCCCCeEEEEeCCHHHHHHHHHhh--CCeEeCCeEEEEeecCCCC
Q psy11608 2 VMYFVDIKKQSSASAFAFVQYTDIASVVRAMRAM--DGEYVGHNRVNLGYGKSLA 54 (99)
Q Consensus 2 ~I~~v~ik~~~~s~gfaFV~F~~~~~a~~Ai~~m--~G~~i~~~~i~v~~~k~~~ 54 (99)
.|.+|.|.++ ||||||+|.+.++|++|++.| ++..+.|++|+|.|+++.+
T Consensus 41 ~v~~v~i~~~---kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~~~ 92 (101)
T 2cq1_A 41 KVTNILMLKG---KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSNHKE 92 (101)
T ss_dssp CEEEEEEETT---TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEECSCSS
T ss_pred CEEEEEEECC---CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEcCccc
Confidence 4788888765 999999999999999999987 5678999999999987653
No 142
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.08 E-value=1.9e-10 Score=69.32 Aligned_cols=44 Identities=18% Similarity=0.357 Sum_probs=38.1
Q ss_pred CCceEEEEcCCCCCCChHHHHhhhcCCCceeeeeEEEEcCCCCCC
Q psy11608 53 LATTCVWVDGVAGKCGTGEHNRVNLGYGKSLATTCVWVDGVAGKC 97 (99)
Q Consensus 53 ~~~~~lfVg~l~~~~s~~~L~~~F~~fG~i~~~~~v~~d~~~g~~ 97 (99)
.++++|||+|||+++++++|+++|++||+|..+ .+..|+.+|++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~-~i~~~~~~~~~ 46 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVST-KAILDKTTNKC 46 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEE-EEECCSSSCSC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEE-EEEecCCCCCc
Confidence 467899999999999999999999999999876 55588777764
No 143
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.08 E-value=2.4e-10 Score=73.04 Aligned_cols=49 Identities=14% Similarity=0.239 Sum_probs=43.2
Q ss_pred ceEEEEEeeCCCCCCeEEEEeCCHHHHHHHHHhhCCeE--eCCeEEEEeecCCC
Q psy11608 2 VMYFVDIKKQSSASAFAFVQYTDIASVVRAMRAMDGEY--VGHNRVNLGYGKSL 53 (99)
Q Consensus 2 ~I~~v~ik~~~~s~gfaFV~F~~~~~a~~Ai~~m~G~~--i~~~~i~v~~~k~~ 53 (99)
.|.+|.|.+ +||||||+|.+.++|.+|++.|+|.. +.|++|+|.|++++
T Consensus 47 ~V~~v~i~~---~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S~~k 97 (100)
T 3r27_A 47 PISYVVVMP---KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYSTSQ 97 (100)
T ss_dssp CEEEEEEET---TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEECSCS
T ss_pred CEEEEEEEc---CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEecccc
Confidence 578888864 68999999999999999999999874 88999999998764
No 144
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.07 E-value=3.3e-10 Score=72.07 Aligned_cols=48 Identities=27% Similarity=0.436 Sum_probs=43.6
Q ss_pred ceEEEEEeeCCCCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecCCCC
Q psy11608 2 VMYFVDIKKQSSASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKSLA 54 (99)
Q Consensus 2 ~I~~v~ik~~~~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k~~~ 54 (99)
.|.+|.|. +|||||+|.+.++|++|++.|||..++|++|+|.++++.+
T Consensus 57 ~i~~v~i~-----kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 104 (108)
T 2jvo_A 57 PMKEVKIL-----NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSKLPA 104 (108)
T ss_dssp CCCEEEEE-----TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCSCCC
T ss_pred CEEEEEEE-----CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCCC
Confidence 46778887 7999999999999999999999999999999999987654
No 145
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.07 E-value=2.2e-10 Score=74.73 Aligned_cols=50 Identities=14% Similarity=0.288 Sum_probs=42.2
Q ss_pred ceEEEEEeeCCCCCCeEEEEeCCHHHHHHHHHhhCCeEe-----CCeEEEEeecCCCC
Q psy11608 2 VMYFVDIKKQSSASAFAFVQYTDIASVVRAMRAMDGEYV-----GHNRVNLGYGKSLA 54 (99)
Q Consensus 2 ~I~~v~ik~~~~s~gfaFV~F~~~~~a~~Ai~~m~G~~i-----~~~~i~v~~~k~~~ 54 (99)
.|++|.|. .+||||||+|.+.++|++|+++|||..+ .++++.+.|++..|
T Consensus 53 ~v~~v~i~---~~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~v~~a~~~p 107 (114)
T 2cq2_A 53 LVDALLMP---PNKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLNFVEKVQ 107 (114)
T ss_dssp CEEEEECC---TTCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEEEESCCC
T ss_pred CeEEEEEe---CCCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEEEEecccCc
Confidence 47777775 3589999999999999999999999988 67888888876544
No 146
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.07 E-value=1.2e-10 Score=72.20 Aligned_cols=42 Identities=19% Similarity=0.392 Sum_probs=39.5
Q ss_pred CCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecCCCC
Q psy11608 13 SASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKSLA 54 (99)
Q Consensus 13 ~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k~~~ 54 (99)
+++|||||+|.+.++|++|++.|||..+.+++|+|.++++.+
T Consensus 54 ~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 95 (97)
T 2e5j_A 54 GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQQR 95 (97)
T ss_dssp TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCCCC
T ss_pred CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCCC
Confidence 789999999999999999999999999999999999987653
No 147
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.07 E-value=2.5e-10 Score=77.20 Aligned_cols=52 Identities=12% Similarity=0.220 Sum_probs=47.3
Q ss_pred ceEEEEEeeCC---CCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecCCC
Q psy11608 2 VMYFVDIKKQS---SASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKSL 53 (99)
Q Consensus 2 ~I~~v~ik~~~---~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k~~ 53 (99)
.|.+|.|.++. .++|||||+|.+.++|++|++.|||..+.+++|+|.|+++.
T Consensus 98 ~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 152 (165)
T 1rk8_A 98 EIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVK 152 (165)
T ss_dssp CEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEEC
T ss_pred CEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCC
Confidence 58899998874 67999999999999999999999999999999999998654
No 148
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.06 E-value=2e-11 Score=78.06 Aligned_cols=48 Identities=15% Similarity=0.130 Sum_probs=43.0
Q ss_pred ceEEEEEeeCCCCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecCC
Q psy11608 2 VMYFVDIKKQSSASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKS 52 (99)
Q Consensus 2 ~I~~v~ik~~~~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k~ 52 (99)
+|.+|.|. .++|||||+|.+.++|++|++.|||..+.+++|+|.|++.
T Consensus 36 ~i~~v~i~---~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 83 (111)
T 1whx_A 36 SLGRVLLP---EGGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPI 83 (111)
T ss_dssp CEEEEECC---SSSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEET
T ss_pred CEEEEEEe---CCCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 47777776 4789999999999999999999999999999999999854
No 149
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.06 E-value=1e-10 Score=74.92 Aligned_cols=40 Identities=10% Similarity=0.135 Sum_probs=34.4
Q ss_pred CceEEEEcCCCCCCChHHHHhhhcCCCceeeeeEEEEcCCC
Q psy11608 54 ATTCVWVDGVAGKCGTGEHNRVNLGYGKSLATTCVWVDGVA 94 (99)
Q Consensus 54 ~~~~lfVg~l~~~~s~~~L~~~F~~fG~i~~~~~v~~d~~~ 94 (99)
.+++|||||||+++++++|+++|++||+|.++ .+..|+.+
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v-~i~~d~~~ 43 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSC-KVVCDENG 43 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEE-EEEEETTE
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEE-EEeecCCC
Confidence 46789999999999999999999999999876 55578654
No 150
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.06 E-value=3e-11 Score=74.76 Aligned_cols=43 Identities=7% Similarity=0.044 Sum_probs=37.3
Q ss_pred ceEEEEcCCCCCCChHHHHhhhcCCC-ceeeeeEEEEcCCCCCCC
Q psy11608 55 TTCVWVDGVAGKCGTGEHNRVNLGYG-KSLATTCVWVDGVAGKCG 98 (99)
Q Consensus 55 ~~~lfVg~l~~~~s~~~L~~~F~~fG-~i~~~~~v~~d~~~g~~~ 98 (99)
++.|||+|||+++|+++|+++|++|| +|.++ .++.|+.||++.
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v-~i~~d~~t~~~r 44 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREV-RLMRNKSSGQSR 44 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBC-CSSSCSSSCCCS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEE-EEEecCCCCCcC
Confidence 57899999999999999999999999 78765 555898888763
No 151
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.06 E-value=1.9e-10 Score=74.86 Aligned_cols=50 Identities=16% Similarity=0.303 Sum_probs=44.4
Q ss_pred ceEEEEEeeCCCCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecCCCC
Q psy11608 2 VMYFVDIKKQSSASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKSLA 54 (99)
Q Consensus 2 ~I~~v~ik~~~~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k~~~ 54 (99)
.|.+|.|. .++|||||+|.+.++|++|++.|||..+.+++|+|.|+++.+
T Consensus 63 ~I~~v~i~---~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~~ 112 (121)
T 2bz2_A 63 NIIDLSMD---PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQP 112 (121)
T ss_dssp CCSCEEEE---TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCSSC
T ss_pred CEEEEEEe---CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCCCC
Confidence 46667774 789999999999999999999999999999999999987654
No 152
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.06 E-value=6.9e-10 Score=69.38 Aligned_cols=48 Identities=19% Similarity=0.381 Sum_probs=43.0
Q ss_pred ceEEEEEeeCCCCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecCCCC
Q psy11608 2 VMYFVDIKKQSSASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKSLA 54 (99)
Q Consensus 2 ~I~~v~ik~~~~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k~~~ 54 (99)
.|.+|.|. +|||||+|.+.++|++|++.|||..+.+++|+|.++++.+
T Consensus 37 ~i~~v~~~-----~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 84 (103)
T 2dgu_A 37 KLERVKKL-----KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPD 84 (103)
T ss_dssp CEEEEEEC-----SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCCC
T ss_pred CEEEEEEE-----CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCCCc
Confidence 57788877 4799999999999999999999999999999999987643
No 153
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.06 E-value=2.1e-10 Score=72.77 Aligned_cols=51 Identities=8% Similarity=0.218 Sum_probs=44.7
Q ss_pred ceEEEEEeeCC--CCCCeEEEEeCCHHHHHHHHHhhCCeEe--------CCeEEEEeecCC
Q psy11608 2 VMYFVDIKKQS--SASAFAFVQYTDIASVVRAMRAMDGEYV--------GHNRVNLGYGKS 52 (99)
Q Consensus 2 ~I~~v~ik~~~--~s~gfaFV~F~~~~~a~~Ai~~m~G~~i--------~~~~i~v~~~k~ 52 (99)
.|.+|.|.++. .++|||||+|.+.++|++|++.|||..+ .+++++|.|+++
T Consensus 51 ~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~~~l~v~~a~p 111 (114)
T 1x5o_A 51 QVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFSGP 111 (114)
T ss_dssp CEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCSSCBEEEECCC
T ss_pred CEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCCCceeEEccCC
Confidence 58889998874 6789999999999999999999999999 567788888764
No 154
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.05 E-value=3.1e-10 Score=67.89 Aligned_cols=42 Identities=14% Similarity=0.087 Sum_probs=36.7
Q ss_pred ceEEEEcCCCCCCChHHHHhhhcCCCceeeeeEEEEcCCCCCC
Q psy11608 55 TTCVWVDGVAGKCGTGEHNRVNLGYGKSLATTCVWVDGVAGKC 97 (99)
Q Consensus 55 ~~~lfVg~l~~~~s~~~L~~~F~~fG~i~~~~~v~~d~~~g~~ 97 (99)
+.+|||+|||+++++++|+++|++||+|.++ .+..|+.+|++
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~-~i~~~~~~~~~ 42 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSG-HVMWDMQTGSS 42 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEE-EEEECTTTCCE
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEE-EEEEcCCCCCc
Confidence 4689999999999999999999999999876 55588877764
No 155
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.05 E-value=2e-10 Score=72.92 Aligned_cols=45 Identities=9% Similarity=0.056 Sum_probs=37.8
Q ss_pred CCCCceEEEEcCCCCCCChHHHHhhhcCCCceeeeeEEEEcCCCCCC
Q psy11608 51 KSLATTCVWVDGVAGKCGTGEHNRVNLGYGKSLATTCVWVDGVAGKC 97 (99)
Q Consensus 51 k~~~~~~lfVg~l~~~~s~~~L~~~F~~fG~i~~~~~v~~d~~~g~~ 97 (99)
...+.++|||||||+++++++|+++|++||+|.++ .+..|+. |++
T Consensus 7 ~~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v-~i~~d~~-g~~ 51 (103)
T 1s79_A 7 NDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNI-QMRRTLH-KAF 51 (103)
T ss_dssp SCSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEE-EEECCCT-TSC
T ss_pred ccCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEE-EEEECCC-CCC
Confidence 34557899999999999999999999999999876 5557876 654
No 156
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.05 E-value=9.2e-11 Score=77.48 Aligned_cols=52 Identities=25% Similarity=0.326 Sum_probs=46.8
Q ss_pred ceEEEEEeeCC---CCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecCCC
Q psy11608 2 VMYFVDIKKQS---SASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKSL 53 (99)
Q Consensus 2 ~I~~v~ik~~~---~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k~~ 53 (99)
.|.+|.|.++. .++|||||+|.+.++|++|++.|||..+.+++|+|.++++.
T Consensus 73 ~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~ 127 (135)
T 2lea_A 73 RVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYG 127 (135)
T ss_dssp CCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCCC
T ss_pred CEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCC
Confidence 47788887763 79999999999999999999999999999999999998753
No 157
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.04 E-value=3e-10 Score=68.50 Aligned_cols=44 Identities=18% Similarity=0.134 Sum_probs=36.9
Q ss_pred CCceEEEEcCCCCCCChHHHHhhhcCCCceeeeeEEEEcCCCCCC
Q psy11608 53 LATTCVWVDGVAGKCGTGEHNRVNLGYGKSLATTCVWVDGVAGKC 97 (99)
Q Consensus 53 ~~~~~lfVg~l~~~~s~~~L~~~F~~fG~i~~~~~v~~d~~~g~~ 97 (99)
.+..+|||+|||.++++++|+++|++||+|.++ .+..|+.+|++
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v-~i~~~~~~~~~ 47 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDA-RVVKDMATGKS 47 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEE-EEEECTTTCCE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEE-EEEecCCCCcc
Confidence 356899999999999999999999999999876 55588777763
No 158
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.04 E-value=3.3e-10 Score=75.25 Aligned_cols=49 Identities=20% Similarity=0.404 Sum_probs=45.2
Q ss_pred ceEEEEEeeCC---CCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeec
Q psy11608 2 VMYFVDIKKQS---SASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYG 50 (99)
Q Consensus 2 ~I~~v~ik~~~---~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~ 50 (99)
+|++|.|.+++ .++|||||+|.+.++|++|++.|||..++|++|+|.|+
T Consensus 120 ~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 120 PLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp CEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 58889998874 67999999999999999999999999999999999986
No 159
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.04 E-value=3e-10 Score=77.90 Aligned_cols=53 Identities=13% Similarity=0.248 Sum_probs=48.1
Q ss_pred ceEEEEEeeCC---CCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecCCCC
Q psy11608 2 VMYFVDIKKQS---SASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKSLA 54 (99)
Q Consensus 2 ~I~~v~ik~~~---~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k~~~ 54 (99)
.|++|.|.++. +++|||||+|.+.++|.+|++.|||..+++++|+|.|+++.+
T Consensus 151 ~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a~~~~ 206 (216)
T 2qfj_A 151 KIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPP 206 (216)
T ss_dssp CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEECSSCS
T ss_pred CeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEecCCC
Confidence 58899998874 679999999999999999999999999999999999987653
No 160
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.04 E-value=2.8e-10 Score=72.66 Aligned_cols=49 Identities=14% Similarity=0.060 Sum_probs=42.9
Q ss_pred ceEEEEEeeCCCCCCeEEEEeCCHHHHHHHHHhhCCe--EeCCeEEEEeecCCC
Q psy11608 2 VMYFVDIKKQSSASAFAFVQYTDIASVVRAMRAMDGE--YVGHNRVNLGYGKSL 53 (99)
Q Consensus 2 ~I~~v~ik~~~~s~gfaFV~F~~~~~a~~Ai~~m~G~--~i~~~~i~v~~~k~~ 53 (99)
.|.+|.|.++ +|||||+|.+.++|++|++.|||. .+.|++|+|.|++..
T Consensus 42 ~V~~v~i~~~---kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~~ 92 (102)
T 1x4d_A 42 VISNHLILNK---INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQKY 92 (102)
T ss_dssp CEEEEEECSS---SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEECCC
T ss_pred CEEEEEEEcC---CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEECCCC
Confidence 5888988864 699999999999999999999864 599999999998743
No 161
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.03 E-value=2.7e-10 Score=70.48 Aligned_cols=45 Identities=11% Similarity=0.161 Sum_probs=38.8
Q ss_pred CCCceEEEEcCCCCCCChHHHHhhhcCCCcee-eeeEEEEcCCCCCC
Q psy11608 52 SLATTCVWVDGVAGKCGTGEHNRVNLGYGKSL-ATTCVWVDGVAGKC 97 (99)
Q Consensus 52 ~~~~~~lfVg~l~~~~s~~~L~~~F~~fG~i~-~~~~v~~d~~~g~~ 97 (99)
+.++++|||+|||+++++++|+++|++||+|. .+ .+..|+.+|+.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v-~i~~~~~~g~~ 51 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETVMSV-KIIRNRLTGIP 51 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEE-EEEECSSSCCE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEE-EEeecCCCCCc
Confidence 34678999999999999999999999999998 65 66689877753
No 162
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.03 E-value=6.4e-10 Score=67.25 Aligned_cols=48 Identities=17% Similarity=0.247 Sum_probs=42.4
Q ss_pred ceEEEEEeeCC---CCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeec
Q psy11608 2 VMYFVDIKKQS---SASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYG 50 (99)
Q Consensus 2 ~I~~v~ik~~~---~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~ 50 (99)
.|.+|.|.++. +++|||||+|.+.++|++|++ ++|..+.|++|+|.++
T Consensus 37 ~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~~A 87 (87)
T 3s7r_A 37 EVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPKKA 87 (87)
T ss_dssp CEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEEEC
T ss_pred CEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEEeC
Confidence 58899998874 789999999999999999996 4888999999998864
No 163
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.03 E-value=1e-09 Score=68.02 Aligned_cols=48 Identities=21% Similarity=0.412 Sum_probs=41.8
Q ss_pred ceEEEEEeeCCCCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecCCCC
Q psy11608 2 VMYFVDIKKQSSASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKSLA 54 (99)
Q Consensus 2 ~I~~v~ik~~~~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k~~~ 54 (99)
.|.+|.+. +|||||+|.+.++|++|++.|||..+.+++|+|.++++.+
T Consensus 43 ~v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 90 (99)
T 2cpd_A 43 AVERVKKI-----RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKPVD 90 (99)
T ss_dssp CEEEEEEC-----SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECCCCCC
T ss_pred ceEEEEEe-----CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECCCCC
Confidence 35666554 6899999999999999999999999999999999987643
No 164
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.03 E-value=2.9e-10 Score=71.89 Aligned_cols=46 Identities=15% Similarity=0.278 Sum_probs=41.9
Q ss_pred ceEEEEEeeCCCCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecCC
Q psy11608 2 VMYFVDIKKQSSASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKS 52 (99)
Q Consensus 2 ~I~~v~ik~~~~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k~ 52 (99)
+|.+|.| ++|||||+|.+.++|++|++.|||..+.+++|+|.+++.
T Consensus 54 ~v~~v~i-----~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 99 (110)
T 1wf1_A 54 RVAGCSV-----HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAGE 99 (110)
T ss_dssp CCSEEEE-----ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESCC
T ss_pred CeEEEEE-----eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCC
Confidence 4677777 579999999999999999999999999999999999874
No 165
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.03 E-value=4.6e-10 Score=68.80 Aligned_cols=44 Identities=11% Similarity=0.109 Sum_probs=38.0
Q ss_pred CCceEEEEcCCCCCCChHHHHhhhcCCCceeeeeEEEEcCCCCCC
Q psy11608 53 LATTCVWVDGVAGKCGTGEHNRVNLGYGKSLATTCVWVDGVAGKC 97 (99)
Q Consensus 53 ~~~~~lfVg~l~~~~s~~~L~~~F~~fG~i~~~~~v~~d~~~g~~ 97 (99)
.++++|||+|||.++++++|+++|++||+|.++ .+..|+.+|++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v-~i~~~~~~~~~ 46 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNI-VLMKDSDTGRS 46 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEE-EEECCSSSCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEE-EEeecCCCCce
Confidence 457899999999999999999999999999876 55578777764
No 166
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.03 E-value=2.2e-10 Score=70.39 Aligned_cols=45 Identities=11% Similarity=0.133 Sum_probs=38.8
Q ss_pred CCceEEEEcCCCCCCChHHHHhhhcCCCceeeeeEEEEcCCCCCC
Q psy11608 53 LATTCVWVDGVAGKCGTGEHNRVNLGYGKSLATTCVWVDGVAGKC 97 (99)
Q Consensus 53 ~~~~~lfVg~l~~~~s~~~L~~~F~~fG~i~~~~~v~~d~~~g~~ 97 (99)
.+.++|||+|||+++++++|+++|++||+|..+..+..|+.+|++
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~ 47 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNS 47 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCc
Confidence 457899999999999999999999999999876366688777764
No 167
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.03 E-value=1.5e-10 Score=68.43 Aligned_cols=48 Identities=13% Similarity=0.207 Sum_probs=42.9
Q ss_pred ceEEEEEeeCC---CCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeec
Q psy11608 2 VMYFVDIKKQS---SASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYG 50 (99)
Q Consensus 2 ~I~~v~ik~~~---~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~ 50 (99)
+|.+|.|.+++ +++|||||+|.+.++|++|++.++ ..+.|++|+|.++
T Consensus 26 ~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 26 EVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 57788888764 789999999999999999999999 9999999998875
No 168
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.02 E-value=4.2e-10 Score=69.69 Aligned_cols=44 Identities=16% Similarity=0.275 Sum_probs=37.8
Q ss_pred CCceEEEEcCCCCCCChHHHHhhhcCCCceeeeeEEEEcCCCCCC
Q psy11608 53 LATTCVWVDGVAGKCGTGEHNRVNLGYGKSLATTCVWVDGVAGKC 97 (99)
Q Consensus 53 ~~~~~lfVg~l~~~~s~~~L~~~F~~fG~i~~~~~v~~d~~~g~~ 97 (99)
.+.++|||+|||.++++++|+++|++||+|.++ .+..|+.+|++
T Consensus 8 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v-~i~~~~~~~~~ 51 (99)
T 2dgs_A 8 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEV-VMIYDAEKQRP 51 (99)
T ss_dssp SSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEE-EECCCTTTCSC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEE-EEEeCCCCCCC
Confidence 457899999999999999999999999999876 55578777754
No 169
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.02 E-value=2.5e-10 Score=72.69 Aligned_cols=40 Identities=23% Similarity=0.283 Sum_probs=37.3
Q ss_pred CCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecCCCC
Q psy11608 15 SAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKSLA 54 (99)
Q Consensus 15 ~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k~~~ 54 (99)
.|||||.|.+.++|++|+++|||..+.+|+|+|.|++..+
T Consensus 46 gG~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~A~~~s 85 (96)
T 2diu_A 46 GCSAILRFINQDSAERAQKRMENEDVFGNRIIVSFTPKNR 85 (96)
T ss_dssp TTCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEESSCCSC
T ss_pred cCEEEEEECCHHHHHHHHHHhcCCccCCceEEEEecCCCc
Confidence 3999999999999999999999999999999999997643
No 170
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.02 E-value=2.1e-10 Score=71.30 Aligned_cols=42 Identities=19% Similarity=0.329 Sum_probs=38.9
Q ss_pred CCCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecCCCC
Q psy11608 12 SSASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKSLA 54 (99)
Q Consensus 12 ~~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k~~~ 54 (99)
++++|||||+|.+.++|++|++ |||..+.+++|+|.++++.+
T Consensus 55 g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a~~~~ 96 (101)
T 1fj7_A 55 GTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPKGRD 96 (101)
T ss_dssp ETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECCSCCC
T ss_pred CCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEcCCCC
Confidence 4899999999999999999998 99999999999999987654
No 171
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.02 E-value=6.9e-10 Score=66.88 Aligned_cols=44 Identities=23% Similarity=0.440 Sum_probs=39.7
Q ss_pred ceEEEEEeeCCCCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEee
Q psy11608 2 VMYFVDIKKQSSASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGY 49 (99)
Q Consensus 2 ~I~~v~ik~~~~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~ 49 (99)
+|.+|.+.++ +|||||+|.+.++|++|+ .|||..+.+++|+|..
T Consensus 43 ~v~~~~~~~~---kg~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~r 86 (87)
T 2hzc_A 43 PVLAVQINQD---KNFAFLEFRSVDETTQAM-AFDGIIFQGQSLKIRR 86 (87)
T ss_dssp SEEEEEECSS---SSEEEEEESSHHHHHHHG-GGTTCEETTEECEEEC
T ss_pred cceEEEecCC---CcEEEEEcCCHHHHHHHH-hcCCCEECCeEEEEeC
Confidence 5788888754 899999999999999999 9999999999999874
No 172
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.02 E-value=1.9e-10 Score=74.17 Aligned_cols=48 Identities=23% Similarity=0.207 Sum_probs=42.7
Q ss_pred eEEEEEeeC--CCCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecC
Q psy11608 3 MYFVDIKKQ--SSASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGK 51 (99)
Q Consensus 3 I~~v~ik~~--~~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k 51 (99)
|.+|.|.++ ++++|||||+|.+.++|++|++ |||..++++.|+|.++.
T Consensus 47 v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a~ 96 (118)
T 2db1_A 47 VAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEVFKSH 96 (118)
T ss_dssp GGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEEEEEC
T ss_pred ceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEEEECC
Confidence 667788766 4789999999999999999999 99999999999998763
No 173
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.02 E-value=5.4e-10 Score=71.05 Aligned_cols=49 Identities=12% Similarity=0.183 Sum_probs=42.4
Q ss_pred ceEEEEEeeCCCCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecCCCC
Q psy11608 2 VMYFVDIKKQSSASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKSLA 54 (99)
Q Consensus 2 ~I~~v~ik~~~~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k~~~ 54 (99)
.|.+|.|. ++++|||||+|.+.++|+.|++.++| +.+++|+|.|++..+
T Consensus 43 ~V~~v~i~--~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a~~~~ 91 (100)
T 2d9o_A 43 EVLNLVLS--SKKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWLEGQP 91 (100)
T ss_dssp CEEEEEEE--SSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECSSCCC
T ss_pred CEEEEEEc--cCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEccCCC
Confidence 57888887 48999999999999999999998666 478899999987654
No 174
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.02 E-value=2.2e-10 Score=70.70 Aligned_cols=43 Identities=9% Similarity=0.126 Sum_probs=37.1
Q ss_pred CceEEEEcCCCCCCChHHHHhhhcCCCceeeeeEEEEcCCCCCC
Q psy11608 54 ATTCVWVDGVAGKCGTGEHNRVNLGYGKSLATTCVWVDGVAGKC 97 (99)
Q Consensus 54 ~~~~lfVg~l~~~~s~~~L~~~F~~fG~i~~~~~v~~d~~~g~~ 97 (99)
|+++|||+|||.++++++|+++|++||+|.++ .+..|+.+|++
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v-~i~~~~~~g~~ 43 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINL-KMMFDPQTGRS 43 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEE-ECCBCTTTCCB
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEE-EEEeCCCCCcc
Confidence 46899999999999999999999999999875 55578777654
No 175
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.01 E-value=6.2e-10 Score=76.83 Aligned_cols=51 Identities=18% Similarity=0.230 Sum_probs=44.4
Q ss_pred ceEEEEEeeCCCCCCeEEEEeCCHHHHHHHHHhhCCeEeCC--eEEEEeecCCC
Q psy11608 2 VMYFVDIKKQSSASAFAFVQYTDIASVVRAMRAMDGEYVGH--NRVNLGYGKSL 53 (99)
Q Consensus 2 ~I~~v~ik~~~~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~--~~i~v~~~k~~ 53 (99)
.|++|.|... +++|||||+|.+.++|++|+++|||..+.+ ++|+|.|+++.
T Consensus 72 ~V~~V~i~~k-~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~~ 124 (164)
T 1sjr_A 72 TVLKIITFTK-NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLT 124 (164)
T ss_dssp CEEEEEEEES-SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECSSS
T ss_pred CEEEEEEEeC-CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEecCC
Confidence 5788888643 478999999999999999999999999954 99999998864
No 176
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.01 E-value=2.4e-10 Score=68.67 Aligned_cols=45 Identities=13% Similarity=0.158 Sum_probs=38.1
Q ss_pred CCCceEEEEcCCCCCCChHHHHhhhcCCCceeeeeEEEEcCCCCCC
Q psy11608 52 SLATTCVWVDGVAGKCGTGEHNRVNLGYGKSLATTCVWVDGVAGKC 97 (99)
Q Consensus 52 ~~~~~~lfVg~l~~~~s~~~L~~~F~~fG~i~~~~~v~~d~~~g~~ 97 (99)
+.+.++|||+|||+++++++|+++|++||+|..+ .+..|+.+|++
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v-~i~~~~~~~~~ 48 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDI-QIPLDYETEKH 48 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEE-ECCEETTTTEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEE-EEEECCCCCcc
Confidence 3467899999999999999999999999999776 55578777654
No 177
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.01 E-value=3.1e-10 Score=66.99 Aligned_cols=41 Identities=10% Similarity=0.112 Sum_probs=35.5
Q ss_pred eEEEEcCCCCCCChHHHHhhhcCCCceeeeeEEEEcCCCCCC
Q psy11608 56 TCVWVDGVAGKCGTGEHNRVNLGYGKSLATTCVWVDGVAGKC 97 (99)
Q Consensus 56 ~~lfVg~l~~~~s~~~L~~~F~~fG~i~~~~~v~~d~~~g~~ 97 (99)
.+|||+|||+++++++|+++|++||+|..+ .+..|+.+|++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v-~i~~~~~~~~~ 41 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKEC-LVMRDPLTKRS 41 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCE-EEECCCCSSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEE-EEecCCCCCCc
Confidence 369999999999999999999999999876 55588877754
No 178
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.01 E-value=1.2e-09 Score=66.86 Aligned_cols=48 Identities=25% Similarity=0.338 Sum_probs=42.9
Q ss_pred ceEEEEEeeCCCCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecCCCC
Q psy11608 2 VMYFVDIKKQSSASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKSLA 54 (99)
Q Consensus 2 ~I~~v~ik~~~~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k~~~ 54 (99)
.|.+|.|.+ +||||+|.+.++|++|++.|||..+.+++|+|.++++.+
T Consensus 36 ~v~~v~~~~-----~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 83 (92)
T 2dgt_A 36 PVIECDIVK-----DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRL 83 (92)
T ss_dssp CCCEEEECS-----SEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESSCCC
T ss_pred CeEEEEEEC-----CEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccCCC
Confidence 467888874 699999999999999999999999999999999987653
No 179
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.01 E-value=3e-10 Score=72.42 Aligned_cols=50 Identities=16% Similarity=0.270 Sum_probs=43.1
Q ss_pred ceEEEEEeeCCCCCCeEEEEeCCHHHHHHHHHhhCCe--EeCCeEEEEeecCCCC
Q psy11608 2 VMYFVDIKKQSSASAFAFVQYTDIASVVRAMRAMDGE--YVGHNRVNLGYGKSLA 54 (99)
Q Consensus 2 ~I~~v~ik~~~~s~gfaFV~F~~~~~a~~Ai~~m~G~--~i~~~~i~v~~~k~~~ 54 (99)
.|.+|.|.+ +||||||+|.+.++|++|++.|+|. .+.|++|+|.|++..+
T Consensus 41 ~V~~v~i~~---~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a~~~~ 92 (104)
T 1wex_A 41 TICYVMMMP---FKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYSTSKR 92 (104)
T ss_dssp CEEEEEEET---TTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEECSSSS
T ss_pred CEEEEEEEC---CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEccCcc
Confidence 578888875 4899999999999999999998765 5899999999987643
No 180
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.01 E-value=1.9e-10 Score=72.24 Aligned_cols=44 Identities=7% Similarity=-0.073 Sum_probs=36.4
Q ss_pred CceEEEEcCCCCCCChHHHHhhhcCCCce--eeeeEEEEcCCCCCCC
Q psy11608 54 ATTCVWVDGVAGKCGTGEHNRVNLGYGKS--LATTCVWVDGVAGKCG 98 (99)
Q Consensus 54 ~~~~lfVg~l~~~~s~~~L~~~F~~fG~i--~~~~~v~~d~~~g~~~ 98 (99)
.-++|||+|||+++|+++|+++|++||.+ .++ .+..|+.||++.
T Consensus 8 ~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v-~i~~d~~tg~sr 53 (95)
T 2lkz_A 8 HMDTIILRNIAPHTVVDSIMTALSPYASLAVNNI-RLIKDKQTQQNR 53 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGE-ECCCCSSSSSCS
T ss_pred ccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEE-EEEecCCCCCCc
Confidence 34789999999999999999999999964 343 455799888763
No 181
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.01 E-value=5.7e-10 Score=69.21 Aligned_cols=44 Identities=14% Similarity=0.157 Sum_probs=38.4
Q ss_pred CCceEEEEcCCCCCCChHHHHhhhcCCCceee--------eeEEEEcCCCCCC
Q psy11608 53 LATTCVWVDGVAGKCGTGEHNRVNLGYGKSLA--------TTCVWVDGVAGKC 97 (99)
Q Consensus 53 ~~~~~lfVg~l~~~~s~~~L~~~F~~fG~i~~--------~~~v~~d~~~g~~ 97 (99)
.+.++|||+|||.++++++|+++|++||.|.+ + .+..|+.+|++
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v-~i~~~~~~g~~ 62 (99)
T 2la6_A 11 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMI-NLYTDRETGKL 62 (99)
T ss_dssp CCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESE-EEEECTTTCSE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccE-EEEecCCCCCe
Confidence 45789999999999999999999999999976 4 56689888764
No 182
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.01 E-value=2.1e-10 Score=81.88 Aligned_cols=50 Identities=12% Similarity=0.042 Sum_probs=46.5
Q ss_pred ceEEEEEeeCC---CCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecC
Q psy11608 2 VMYFVDIKKQS---SASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGK 51 (99)
Q Consensus 2 ~I~~v~ik~~~---~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k 51 (99)
.|.+|.|.+|. +++|||||+|.+.++|++||+.|||..|.+++|+|.+++
T Consensus 96 ~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~a~ 148 (229)
T 3q2s_C 96 DILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPVN 148 (229)
T ss_dssp CEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEECC
T ss_pred ceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEECC
Confidence 58999999884 789999999999999999999999999999999999875
No 183
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.00 E-value=4.9e-10 Score=68.56 Aligned_cols=45 Identities=16% Similarity=0.142 Sum_probs=38.8
Q ss_pred CCCceEEEEcCCCCCCChHHHHhhhcCCCceeeeeEEEEcCCCCCC
Q psy11608 52 SLATTCVWVDGVAGKCGTGEHNRVNLGYGKSLATTCVWVDGVAGKC 97 (99)
Q Consensus 52 ~~~~~~lfVg~l~~~~s~~~L~~~F~~fG~i~~~~~v~~d~~~g~~ 97 (99)
+.++++|||+|||+++++++|+++|++||+|..+ .+..|+.+|++
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v-~i~~~~~~~~~ 56 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADV-SIVYDQQSRRS 56 (95)
T ss_dssp CCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEE-EEEECSSSSSE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEE-EEEEcCCCCCc
Confidence 4567899999999999999999999999999876 55588877753
No 184
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.00 E-value=1.6e-10 Score=77.08 Aligned_cols=48 Identities=23% Similarity=0.184 Sum_probs=43.1
Q ss_pred eEEEEEeeCC--CCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecC
Q psy11608 3 MYFVDIKKQS--SASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGK 51 (99)
Q Consensus 3 I~~v~ik~~~--~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k 51 (99)
|.+|.|.+|. +++|||||+|.+.++|++|++ |||..+++++|+|.++.
T Consensus 74 v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V~~a~ 123 (136)
T 2hgl_A 74 AAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEVFKSH 123 (136)
T ss_dssp STTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEEEECC
T ss_pred eeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEEEECC
Confidence 6778888764 789999999999999999999 99999999999998764
No 185
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.99 E-value=1.4e-09 Score=67.68 Aligned_cols=50 Identities=20% Similarity=0.379 Sum_probs=44.4
Q ss_pred ceEEEEEeeC---CCCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecCCC
Q psy11608 2 VMYFVDIKKQ---SSASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKSL 53 (99)
Q Consensus 2 ~I~~v~ik~~---~~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k~~ 53 (99)
+|.+|.|.++ ++++|||||+|.+.++|++|++ ++..+.+++|+|.++++.
T Consensus 41 ~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~~a~~~ 93 (103)
T 2cqg_A 41 EVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCKLPNSK 93 (103)
T ss_dssp CEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEECCCTT
T ss_pred CeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEEecCCC
Confidence 5889999887 4789999999999999999999 478999999999998754
No 186
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.99 E-value=1.5e-09 Score=66.21 Aligned_cols=47 Identities=23% Similarity=0.328 Sum_probs=42.7
Q ss_pred ceEEEEEeeCCCCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecCCC
Q psy11608 2 VMYFVDIKKQSSASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKSL 53 (99)
Q Consensus 2 ~I~~v~ik~~~~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k~~ 53 (99)
+|.+|.|.+ +||||+|.+.++|++|++.|||..+.+++|+|.++++.
T Consensus 35 ~v~~~~~~~-----~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 81 (90)
T 2dnp_A 35 RVIECDVVK-----DYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTKG 81 (90)
T ss_dssp CEEEEEECS-----SCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCCC
T ss_pred CEEEEEEEC-----CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCCC
Confidence 578888884 69999999999999999999999999999999998754
No 187
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.99 E-value=5.2e-10 Score=68.55 Aligned_cols=41 Identities=27% Similarity=0.451 Sum_probs=38.1
Q ss_pred CCCeEEEEeCCHHHHHHHHHhhCC-eEeCCeEEEEeecCCCC
Q psy11608 14 ASAFAFVQYTDIASVVRAMRAMDG-EYVGHNRVNLGYGKSLA 54 (99)
Q Consensus 14 s~gfaFV~F~~~~~a~~Ai~~m~G-~~i~~~~i~v~~~k~~~ 54 (99)
++|||||+|.+.++|++|++.||| ..+.+++|+|.++++.+
T Consensus 43 ~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~~ 84 (93)
T 2cqh_A 43 KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSVSKK 84 (93)
T ss_dssp ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECCCCC
T ss_pred CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEccCcc
Confidence 589999999999999999999999 99999999999987653
No 188
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.99 E-value=4.8e-10 Score=69.32 Aligned_cols=45 Identities=13% Similarity=0.138 Sum_probs=38.1
Q ss_pred CCCceEEEEcCCCCCCChHHHHhhhcCCCceeeeeEEEEcCCCCCC
Q psy11608 52 SLATTCVWVDGVAGKCGTGEHNRVNLGYGKSLATTCVWVDGVAGKC 97 (99)
Q Consensus 52 ~~~~~~lfVg~l~~~~s~~~L~~~F~~fG~i~~~~~v~~d~~~g~~ 97 (99)
..++++|||+|||.++++++|+++|++||+|.++ .+..|+.+|++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v-~i~~~~~~~~~ 49 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSEL-HYPIDSLTKKP 49 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEE-ECCCCTTTCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEE-EEEecCCCCCc
Confidence 4567899999999999999999999999999775 55577767654
No 189
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.99 E-value=5e-10 Score=68.53 Aligned_cols=44 Identities=18% Similarity=0.225 Sum_probs=37.5
Q ss_pred CCceEEEEcCCCCCCChHHHHhhhcCCCceeeeeEEEEcCCCCCC
Q psy11608 53 LATTCVWVDGVAGKCGTGEHNRVNLGYGKSLATTCVWVDGVAGKC 97 (99)
Q Consensus 53 ~~~~~lfVg~l~~~~s~~~L~~~F~~fG~i~~~~~v~~d~~~g~~ 97 (99)
.+.++|||+|||+++++++|+++|++||+|..+ .+..|+.+|++
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v-~i~~~~~~~~~ 57 (94)
T 2e5h_A 14 PSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKV-TIMKDKDTRKS 57 (94)
T ss_dssp CCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEE-EECCCSSSCCC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE-EEEeCCCCCCc
Confidence 456889999999999999999999999999775 55578777654
No 190
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.99 E-value=3.7e-10 Score=69.82 Aligned_cols=44 Identities=25% Similarity=0.395 Sum_probs=38.5
Q ss_pred CeEEEEeecCCCCceEEEEcCCCCCCChHHHHhhhcCCCceeee
Q psy11608 42 HNRVNLGYGKSLATTCVWVDGVAGKCGTGEHNRVNLGYGKSLAT 85 (99)
Q Consensus 42 ~~~i~v~~~k~~~~~~lfVg~l~~~~s~~~L~~~F~~fG~i~~~ 85 (99)
+.+.++.++++.++++|||+|||+++++++|+++|++||+|.++
T Consensus 4 g~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v 47 (97)
T 1why_A 4 GSSGKIGYGKANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTI 47 (97)
T ss_dssp CCCCCCCCCCCCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEE
T ss_pred CccccccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEE
Confidence 34556678888889999999999999999999999999999654
No 191
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.99 E-value=2.4e-10 Score=73.56 Aligned_cols=40 Identities=13% Similarity=0.197 Sum_probs=33.9
Q ss_pred CCCCceEEEEcCCCCCCChHHHHhhhcCCCceeeeeEEEEc
Q psy11608 51 KSLATTCVWVDGVAGKCGTGEHNRVNLGYGKSLATTCVWVD 91 (99)
Q Consensus 51 k~~~~~~lfVg~l~~~~s~~~L~~~F~~fG~i~~~~~v~~d 91 (99)
.+.+.++|||+|||.++++++|+++|++||+|.++ .+..|
T Consensus 12 ~~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v-~i~~~ 51 (105)
T 1sjq_A 12 SGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNL-LMLKG 51 (105)
T ss_dssp CCCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEE-EEETT
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEE-EEEcC
Confidence 45568899999999999999999999999999776 34344
No 192
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=98.99 E-value=7e-10 Score=75.12 Aligned_cols=53 Identities=21% Similarity=0.355 Sum_probs=47.8
Q ss_pred ceEEEEEeeCC---CCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecCCCC
Q psy11608 2 VMYFVDIKKQS---SASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKSLA 54 (99)
Q Consensus 2 ~I~~v~ik~~~---~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k~~~ 54 (99)
.|.+|.+.++. .++|||||+|.+.++|++|++.|||..+++++|+|.++++.+
T Consensus 140 ~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 195 (198)
T 2yh0_A 140 PLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGA 195 (198)
T ss_dssp CEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEESCCCC
T ss_pred CccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCC
Confidence 57889888874 679999999999999999999999999999999999987653
No 193
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.99 E-value=8e-10 Score=68.04 Aligned_cols=43 Identities=21% Similarity=0.275 Sum_probs=37.0
Q ss_pred CCCceEEEEcCCCCCCChHHHHhhhcCCCceeeeeEEEEcCCCCCC
Q psy11608 52 SLATTCVWVDGVAGKCGTGEHNRVNLGYGKSLATTCVWVDGVAGKC 97 (99)
Q Consensus 52 ~~~~~~lfVg~l~~~~s~~~L~~~F~~fG~i~~~~~v~~d~~~g~~ 97 (99)
+.+.++|||+|||.++++++|+++|++||+|.+ +.+|+.+|++
T Consensus 5 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~---v~~~~~~g~~ 47 (94)
T 2e5g_A 5 SSGLRSVFVSGFPRGVDSAQLSEYFLAFGPVAS---VVMDKDKGVF 47 (94)
T ss_dssp CTTCCEEEEECCCTTCCHHHHHHHGGGTSCEEE---EEECSSSCCE
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEE---EEEcCCCCcE
Confidence 345689999999999999999999999999964 4689888763
No 194
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.99 E-value=8.3e-10 Score=68.78 Aligned_cols=44 Identities=9% Similarity=0.104 Sum_probs=38.2
Q ss_pred CCceEEEEcCCCCCCChHHHHhhhcCCCceeeeeEEEEcCCCCCC
Q psy11608 53 LATTCVWVDGVAGKCGTGEHNRVNLGYGKSLATTCVWVDGVAGKC 97 (99)
Q Consensus 53 ~~~~~lfVg~l~~~~s~~~L~~~F~~fG~i~~~~~v~~d~~~g~~ 97 (99)
.++++|||+|||.++++++|+++|++||+|..+ .+..|+.+|++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v-~i~~~~~~~~~ 56 (103)
T 2cq0_A 13 DDNATIRVTNLSEDTRETDLQELFRPFGSISRI-YLAKDKTTGQS 56 (103)
T ss_dssp SSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEE-EEEECSSSCSE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEE-EEeecCCCCce
Confidence 457899999999999999999999999999876 55588877764
No 195
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=98.99 E-value=7.5e-10 Score=69.21 Aligned_cols=44 Identities=16% Similarity=0.172 Sum_probs=38.4
Q ss_pred CCceEEEEcCCCCCCChHHHHhhhcCCCceeeeeEEEEcCCCCCC
Q psy11608 53 LATTCVWVDGVAGKCGTGEHNRVNLGYGKSLATTCVWVDGVAGKC 97 (99)
Q Consensus 53 ~~~~~lfVg~l~~~~s~~~L~~~F~~fG~i~~~~~v~~d~~~g~~ 97 (99)
.++++|||+|||.++++++|+++|++||+|..+ .+..|+.+|++
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v-~i~~~~~~~~~ 64 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNI-HLNLDRRTGYL 64 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEE-EEEECTTTSSE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEE-EEEecCCCCce
Confidence 456889999999999999999999999999876 56688887764
No 196
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=98.98 E-value=3.3e-10 Score=70.12 Aligned_cols=47 Identities=26% Similarity=0.312 Sum_probs=42.1
Q ss_pred ceEEEEEeeCCCCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecCCC
Q psy11608 2 VMYFVDIKKQSSASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKSL 53 (99)
Q Consensus 2 ~I~~v~ik~~~~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k~~ 53 (99)
+|.+|.|. +|||||+|.+.++|++|++.|||..+.+++|+|.++++.
T Consensus 37 ~v~~v~i~-----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~ 83 (96)
T 2kvi_A 37 HIMQINIK-----NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSSSN 83 (96)
T ss_dssp CCCEEEEE-----TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEECC
T ss_pred CEEEEEEe-----CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcCcC
Confidence 47778885 799999999999999999999999999999999987654
No 197
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=98.98 E-value=3.6e-10 Score=74.69 Aligned_cols=51 Identities=12% Similarity=0.174 Sum_probs=45.7
Q ss_pred ceEEEEEeeC---CCCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecCCC
Q psy11608 2 VMYFVDIKKQ---SSASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKSL 53 (99)
Q Consensus 2 ~I~~v~ik~~---~~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k~~ 53 (99)
.|.+|.|.++ +.++|||||+|.+.++|++|++ ++|..++|++|+|.|+++.
T Consensus 113 ~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~pk 166 (167)
T 2cjk_A 113 TIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAEPR 166 (167)
T ss_dssp CCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECCCC
T ss_pred cEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecCCC
Confidence 4778888876 4799999999999999999998 8999999999999998765
No 198
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=98.98 E-value=6.3e-10 Score=67.32 Aligned_cols=42 Identities=17% Similarity=0.183 Sum_probs=37.0
Q ss_pred ceEEEEcCCCCCCChHHHHhhhcCCCceeeeeEEEEcCCCCCC
Q psy11608 55 TTCVWVDGVAGKCGTGEHNRVNLGYGKSLATTCVWVDGVAGKC 97 (99)
Q Consensus 55 ~~~lfVg~l~~~~s~~~L~~~F~~fG~i~~~~~v~~d~~~g~~ 97 (99)
.++|||+|||+++++++|+++|++||+|..+ .+..|+.+|++
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v-~i~~~~~~~~~ 47 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRV-TILCDKFSGHP 47 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEE-EEEESCSSSSC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEE-EEEecCCCCCc
Confidence 4789999999999999999999999999876 56688877764
No 199
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=98.98 E-value=6.8e-10 Score=70.75 Aligned_cols=43 Identities=9% Similarity=0.190 Sum_probs=37.3
Q ss_pred CceEEEEcCCCCCCChHHHHhhhcCCCceeeeeEEEEcCCCCCC
Q psy11608 54 ATTCVWVDGVAGKCGTGEHNRVNLGYGKSLATTCVWVDGVAGKC 97 (99)
Q Consensus 54 ~~~~lfVg~l~~~~s~~~L~~~F~~fG~i~~~~~v~~d~~~g~~ 97 (99)
+.++|||+|||.++++++|+++|++||+|.++ .+..|+.+|++
T Consensus 39 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~-~i~~~~~~g~~ 81 (118)
T 2khc_A 39 EGCNLFIYHLPQEFTDTDLASTFLPFGNVISA-KVFIDKQTSLS 81 (118)
T ss_dssp CSEEEEEECSCTTCCHHHHHHHTTTSCEEEEE-EECCCSSSSCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEE-EEEeCCCCCCc
Confidence 46889999999999999999999999999875 55578777764
No 200
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.98 E-value=4.4e-10 Score=73.71 Aligned_cols=50 Identities=6% Similarity=0.052 Sum_probs=44.0
Q ss_pred ceEEEEEeeCCCCCCeEEEEeCCHHHHHHHHHhhCC--eEeCCeEEEEeecCCCC
Q psy11608 2 VMYFVDIKKQSSASAFAFVQYTDIASVVRAMRAMDG--EYVGHNRVNLGYGKSLA 54 (99)
Q Consensus 2 ~I~~v~ik~~~~s~gfaFV~F~~~~~a~~Ai~~m~G--~~i~~~~i~v~~~k~~~ 54 (99)
.|.+|.|.++ ||||||+|.+.++|++|++.|++ ..+.|++|+|.|+++.+
T Consensus 57 ~V~~v~i~~~---kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~k~ 108 (119)
T 2ad9_A 57 KVTNLLMLKG---KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHKE 108 (119)
T ss_dssp CCCEEEEEGG---GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEECSSSS
T ss_pred CEEEEEEeCC---CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEccCCC
Confidence 4788888875 89999999999999999999985 58999999999987654
No 201
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=98.97 E-value=2.7e-10 Score=71.29 Aligned_cols=44 Identities=11% Similarity=0.151 Sum_probs=38.0
Q ss_pred CCceEEEEcCCCCCCChHHHHhhhcCCCceeeeeEEEEcCCCCCC
Q psy11608 53 LATTCVWVDGVAGKCGTGEHNRVNLGYGKSLATTCVWVDGVAGKC 97 (99)
Q Consensus 53 ~~~~~lfVg~l~~~~s~~~L~~~F~~fG~i~~~~~v~~d~~~g~~ 97 (99)
.+.++|||+|||.++++++|+++|++||+|.++ .+..|+.+|++
T Consensus 11 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v-~i~~~~~~g~~ 54 (106)
T 2dgp_A 11 HDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYEL-TVLKDRFTGMH 54 (106)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEE-ECCCCSSSCSC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEE-EEEecCCCCCc
Confidence 457899999999999999999999999999876 55578877764
No 202
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.97 E-value=5.6e-10 Score=71.28 Aligned_cols=48 Identities=10% Similarity=0.055 Sum_probs=42.0
Q ss_pred EEEEEeeCC--CCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecCC
Q psy11608 4 YFVDIKKQS--SASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKS 52 (99)
Q Consensus 4 ~~v~ik~~~--~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k~ 52 (99)
.+|.|.++. +++|||||+|.+.++|++|++. ||..+++++|+|.++.+
T Consensus 44 ~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~~a~~ 93 (114)
T 2cpy_A 44 NAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVHVVTL 93 (114)
T ss_dssp TTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEEEECH
T ss_pred CeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEEECCH
Confidence 457777664 7899999999999999999987 99999999999988753
No 203
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=98.97 E-value=1.8e-09 Score=71.96 Aligned_cols=50 Identities=20% Similarity=0.302 Sum_probs=43.8
Q ss_pred ceEEEEEeeCCCCCCe-EEEEeCCHHHHHHHHHhhCCeEeCC--eEEEEeecCCC
Q psy11608 2 VMYFVDIKKQSSASAF-AFVQYTDIASVVRAMRAMDGEYVGH--NRVNLGYGKSL 53 (99)
Q Consensus 2 ~I~~v~ik~~~~s~gf-aFV~F~~~~~a~~Ai~~m~G~~i~~--~~i~v~~~k~~ 53 (99)
.|.+|.|.+ +++|| |||+|.++++|++|+++|||..+.+ ++|+|.|+++.
T Consensus 54 ~V~~V~i~~--~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~~ 106 (130)
T 3zzy_A 54 TVLKIITFT--KNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLT 106 (130)
T ss_dssp CEEEEEEEE--ETTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECSCS
T ss_pred CEEEEEEEc--CCCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecCCC
Confidence 478887765 34788 9999999999999999999999977 89999999864
No 204
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.97 E-value=4.7e-10 Score=70.58 Aligned_cols=44 Identities=9% Similarity=0.027 Sum_probs=37.9
Q ss_pred CCceEEEEcCCCCCCChHHHHhhhcCCCceeeeeEEEEcCCCCCC
Q psy11608 53 LATTCVWVDGVAGKCGTGEHNRVNLGYGKSLATTCVWVDGVAGKC 97 (99)
Q Consensus 53 ~~~~~lfVg~l~~~~s~~~L~~~F~~fG~i~~~~~v~~d~~~g~~ 97 (99)
.+.++|||+|||.++++++|+++|++||+|..+ .+..|+.+|++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v-~i~~~~~~g~~ 56 (111)
T 1x4h_A 13 TEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYV-RVVLHPDTEHS 56 (111)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEE-ECCBCSSSCCB
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE-EEEecCCCCCC
Confidence 457899999999999999999999999999775 55578877754
No 205
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=98.52 E-value=5.9e-11 Score=75.77 Aligned_cols=49 Identities=18% Similarity=0.277 Sum_probs=43.7
Q ss_pred EEEeeC---CCCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecCCCC
Q psy11608 6 VDIKKQ---SSASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKSLA 54 (99)
Q Consensus 6 v~ik~~---~~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k~~~ 54 (99)
|.|.++ ++++|||||+|.+.++|++|++.|||..+.+++|+|.++++.+
T Consensus 45 v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 96 (116)
T 2lcw_A 45 INLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNPIKVSFATRRA 96 (116)
Confidence 666665 3789999999999999999999999999999999999987654
No 206
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=98.97 E-value=1.2e-09 Score=68.13 Aligned_cols=42 Identities=12% Similarity=0.027 Sum_probs=36.0
Q ss_pred CCceEEEEcCCCCCCChHHHHhhhcCCCceeeeeEEEEcCCCCC
Q psy11608 53 LATTCVWVDGVAGKCGTGEHNRVNLGYGKSLATTCVWVDGVAGK 96 (99)
Q Consensus 53 ~~~~~lfVg~l~~~~s~~~L~~~F~~fG~i~~~~~v~~d~~~g~ 96 (99)
.+.++|||+|||.++++++|+++|++||+|..+ .+..|+ +|+
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v-~i~~~~-~g~ 54 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDEC-TVLRGP-DGS 54 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEE-EEEECS-SSC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEE-EEEECC-CCC
Confidence 357899999999999999999999999999876 555776 554
No 207
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.96 E-value=7.6e-10 Score=68.96 Aligned_cols=44 Identities=14% Similarity=0.037 Sum_probs=37.5
Q ss_pred CCceEEEEcCCCCCCChHHHHhhhcCCCceeeeeEEEEcCCCCCC
Q psy11608 53 LATTCVWVDGVAGKCGTGEHNRVNLGYGKSLATTCVWVDGVAGKC 97 (99)
Q Consensus 53 ~~~~~lfVg~l~~~~s~~~L~~~F~~fG~i~~~~~v~~d~~~g~~ 97 (99)
.+.++|||+|||.++++++|+++|++||+|..+ .+..|+.+|++
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v-~i~~~~~~~~~ 54 (103)
T 2dnm_A 11 DGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDV-YIPREPHTKAP 54 (103)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEE-ECCBCSSSCSB
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEE-EEEeCCCCCCC
Confidence 346899999999999999999999999999775 55578777764
No 208
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=98.96 E-value=2.8e-10 Score=74.29 Aligned_cols=45 Identities=9% Similarity=-0.087 Sum_probs=38.6
Q ss_pred CCceEEEEcCCCCCCChHHHHhhhcCCCceee--eeEEEEcCCCCCCC
Q psy11608 53 LATTCVWVDGVAGKCGTGEHNRVNLGYGKSLA--TTCVWVDGVAGKCG 98 (99)
Q Consensus 53 ~~~~~lfVg~l~~~~s~~~L~~~F~~fG~i~~--~~~v~~d~~~g~~~ 98 (99)
.+.++|||||||.++++++|+++|++||.|.. + .++.|+.+|++.
T Consensus 21 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v-~i~~d~~tg~~r 67 (131)
T 2m2b_A 21 NANDTIILRNLNPHSTMDSILGALAPYAVLSSSNV-RVIKDKQTQLNR 67 (131)
T ss_dssp CCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTE-ECCBCSSSSSBC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeE-EEEEcCCCCCcc
Confidence 34689999999999999999999999999965 4 566899888753
No 209
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.96 E-value=1e-09 Score=68.00 Aligned_cols=45 Identities=20% Similarity=0.264 Sum_probs=37.7
Q ss_pred CCCCceEEEEcCCCCCCChHHHHhhhcCCCceeeeeEEEEcCCCCCC
Q psy11608 51 KSLATTCVWVDGVAGKCGTGEHNRVNLGYGKSLATTCVWVDGVAGKC 97 (99)
Q Consensus 51 k~~~~~~lfVg~l~~~~s~~~L~~~F~~fG~i~~~~~v~~d~~~g~~ 97 (99)
...+.++|||+|||.++++++|+++|++||+|..+ .+..|+ +|++
T Consensus 13 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v-~i~~~~-~g~~ 57 (100)
T 2do4_A 13 TSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDL-RLVTNR-AGKP 57 (100)
T ss_dssp SCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEE-EEEECT-TSCE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEE-EEEECC-CCCE
Confidence 34567899999999999999999999999999876 555777 6653
No 210
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=98.96 E-value=6.1e-10 Score=70.78 Aligned_cols=44 Identities=9% Similarity=0.089 Sum_probs=36.4
Q ss_pred CCceEEEEcCCCCCCChHHHHhhhcCCCceeeeeEEEEcCCCCCC
Q psy11608 53 LATTCVWVDGVAGKCGTGEHNRVNLGYGKSLATTCVWVDGVAGKC 97 (99)
Q Consensus 53 ~~~~~lfVg~l~~~~s~~~L~~~F~~fG~i~~~~~v~~d~~~g~~ 97 (99)
.+.++|||+|||.++++++|+++|++||+|.++ .+..|+.+|++
T Consensus 23 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v-~i~~~~~tg~~ 66 (109)
T 2rs2_A 23 SSGCKMFIGGLSWQTTQEGLREYFGQFGEVKEC-LVMRDPLTKRS 66 (109)
T ss_dssp ---CCEEEESCCTTCCHHHHHHHHTTTSCEEEE-EECCCTTTCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEE-EEEECCCCCCc
Confidence 346889999999999999999999999999876 55578877764
No 211
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.96 E-value=7.9e-10 Score=68.91 Aligned_cols=44 Identities=20% Similarity=0.120 Sum_probs=38.2
Q ss_pred CCceEEEEcCCCCCCChHHHHhhhcCCCceeeeeEEEEcCCCCCC
Q psy11608 53 LATTCVWVDGVAGKCGTGEHNRVNLGYGKSLATTCVWVDGVAGKC 97 (99)
Q Consensus 53 ~~~~~lfVg~l~~~~s~~~L~~~F~~fG~i~~~~~v~~d~~~g~~ 97 (99)
.+.++|||+|||.++++++|+++|++||+|..+ .+..|+.+|++
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v-~i~~~~~~g~~ 56 (103)
T 2cqg_A 13 QKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMV-QVKKDLKTGHS 56 (103)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEE-EEEECSSSCSE
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEE-EEEecCCCCCc
Confidence 346789999999999999999999999999876 56688887764
No 212
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=98.95 E-value=2.2e-10 Score=71.72 Aligned_cols=44 Identities=16% Similarity=0.107 Sum_probs=38.5
Q ss_pred CceEEEEcCCCC------CCChHHHHhhhcCCCceeeeeEEEEcCCCCCCC
Q psy11608 54 ATTCVWVDGVAG------KCGTGEHNRVNLGYGKSLATTCVWVDGVAGKCG 98 (99)
Q Consensus 54 ~~~~lfVg~l~~------~~s~~~L~~~F~~fG~i~~~~~v~~d~~~g~~~ 98 (99)
.+++|||+|||. ++++++|+++|++||+|.++ .+..|+.||++.
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v-~i~~d~~tg~~k 54 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNM-EFPIDEATGKTK 54 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEE-ECCEETTTTEEC
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEE-EEEEcCCCCccc
Confidence 467899999999 99999999999999999876 566899888653
No 213
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.95 E-value=5.9e-10 Score=69.27 Aligned_cols=44 Identities=14% Similarity=0.154 Sum_probs=37.7
Q ss_pred CCceEEEEcCCCCCCChHHHHhhhcCCCceeeeeEEEEcCCCCCC
Q psy11608 53 LATTCVWVDGVAGKCGTGEHNRVNLGYGKSLATTCVWVDGVAGKC 97 (99)
Q Consensus 53 ~~~~~lfVg~l~~~~s~~~L~~~F~~fG~i~~~~~v~~d~~~g~~ 97 (99)
.+.++|||+|||.++++++|+++|++||+|..+ .+..|+.+|++
T Consensus 10 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v-~i~~~~~~~~~ 53 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDI-QIPLDYETEKH 53 (102)
T ss_dssp CCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCE-ECCCCSSSCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEE-EEEecCCCCCc
Confidence 457899999999999999999999999999875 55578777664
No 214
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=98.95 E-value=3.8e-10 Score=66.53 Aligned_cols=40 Identities=13% Similarity=0.188 Sum_probs=34.6
Q ss_pred EEEEcCCCCCCChHHHHhhhcCCCceeeeeEEEEcCCCCCC
Q psy11608 57 CVWVDGVAGKCGTGEHNRVNLGYGKSLATTCVWVDGVAGKC 97 (99)
Q Consensus 57 ~lfVg~l~~~~s~~~L~~~F~~fG~i~~~~~v~~d~~~g~~ 97 (99)
+|||+|||+++++++|+++|++||+|.++ .+..|+.+|++
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v-~i~~~~~~~~~ 40 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDA-MLMFDKTTNRH 40 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEE-CCCBCSSSTTS
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEE-EEEecCCCCCc
Confidence 59999999999999999999999999876 45578777754
No 215
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=98.95 E-value=2.4e-10 Score=67.27 Aligned_cols=48 Identities=13% Similarity=0.298 Sum_probs=41.6
Q ss_pred ceEEEEEeeC---CCCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeec
Q psy11608 2 VMYFVDIKKQ---SSASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYG 50 (99)
Q Consensus 2 ~I~~v~ik~~---~~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~ 50 (99)
+|.+|.+.++ +.++|||||+|.++++|++|++. +|..+.|++++|.++
T Consensus 25 ~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 25 EVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGLSKCEIKVA 75 (75)
T ss_dssp CCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBTTBCCCEEEC
T ss_pred CeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEC
Confidence 5778888776 37899999999999999999985 889999999988764
No 216
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.95 E-value=8.3e-10 Score=70.25 Aligned_cols=44 Identities=20% Similarity=0.264 Sum_probs=37.9
Q ss_pred CCceEEEEcCCCCCCChHHHHhhhcCCCceeeeeEEEEcCCCCCC
Q psy11608 53 LATTCVWVDGVAGKCGTGEHNRVNLGYGKSLATTCVWVDGVAGKC 97 (99)
Q Consensus 53 ~~~~~lfVg~l~~~~s~~~L~~~F~~fG~i~~~~~v~~d~~~g~~ 97 (99)
.+.++|||+|||.++++++|+++|++||+|..+ .+..|+.+|++
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v-~i~~~~~~~~~ 58 (116)
T 2cqd_A 15 TTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEA-VVITDRQTGKS 58 (116)
T ss_dssp CSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEE-EESCCSSSCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEE-EEEEcCCCCcc
Confidence 457899999999999999999999999999775 55578777764
No 217
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.94 E-value=8.9e-10 Score=69.27 Aligned_cols=50 Identities=16% Similarity=0.284 Sum_probs=42.2
Q ss_pred ceEE-EEEeeC--CCCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecCC
Q psy11608 2 VMYF-VDIKKQ--SSASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKS 52 (99)
Q Consensus 2 ~I~~-v~ik~~--~~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k~ 52 (99)
+|.+ |.|..+ ++++|||||+|.+.++|++|++. ||..++++.|+|.++..
T Consensus 41 ~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~~~~ 93 (104)
T 1wg5_A 41 IVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFKSSR 93 (104)
T ss_dssp EEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEEECT
T ss_pred CcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEECCH
Confidence 3555 667665 47899999999999999999998 99999999999987643
No 218
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.94 E-value=7.9e-10 Score=68.99 Aligned_cols=44 Identities=23% Similarity=0.197 Sum_probs=37.6
Q ss_pred CCceEEEEcCCCCCCChHHHHhhhcCCCceeeeeEEEEcCCCCCC
Q psy11608 53 LATTCVWVDGVAGKCGTGEHNRVNLGYGKSLATTCVWVDGVAGKC 97 (99)
Q Consensus 53 ~~~~~lfVg~l~~~~s~~~L~~~F~~fG~i~~~~~v~~d~~~g~~ 97 (99)
.+.++|||+|||.++++++|+++|++||+|..+ .+..|+.+|++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v-~i~~~~~~~~~ 56 (105)
T 1x5u_A 13 NQDATVYVGGLDEKVSEPLLWELFLQAGPVVNT-HMPKDRVTGQH 56 (105)
T ss_dssp CTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEE-ECCBCSSSCSB
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEE-EEEecCCCCcC
Confidence 457899999999999999999999999999775 55577777664
No 219
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.94 E-value=4e-10 Score=71.93 Aligned_cols=40 Identities=8% Similarity=-0.125 Sum_probs=33.7
Q ss_pred CCCceEEEEcCCCC-CCChHHHHhhhcCCCceeeeeEEEEcC
Q psy11608 52 SLATTCVWVDGVAG-KCGTGEHNRVNLGYGKSLATTCVWVDG 92 (99)
Q Consensus 52 ~~~~~~lfVg~l~~-~~s~~~L~~~F~~fG~i~~~~~v~~d~ 92 (99)
..|+++|||+|||. ++++++|+++|++||+|.++ .++.|+
T Consensus 12 ~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v-~i~~~k 52 (102)
T 1x4d_A 12 VETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNH-LILNKI 52 (102)
T ss_dssp CCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEE-EECSSS
T ss_pred CCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEE-EEEcCC
Confidence 45788999999999 99999999999999999765 333444
No 220
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.94 E-value=9.1e-10 Score=68.83 Aligned_cols=44 Identities=11% Similarity=0.117 Sum_probs=38.3
Q ss_pred CCceEEEEcCCCCCCChHHHHhhhcCCCceeeeeEEEEcCCCCCC
Q psy11608 53 LATTCVWVDGVAGKCGTGEHNRVNLGYGKSLATTCVWVDGVAGKC 97 (99)
Q Consensus 53 ~~~~~lfVg~l~~~~s~~~L~~~F~~fG~i~~~~~v~~d~~~g~~ 97 (99)
.+.++|||+|||.++++++|+++|++||+|.++ .+..|+.+|++
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v-~i~~~~~~g~~ 57 (105)
T 2dh8_A 14 DEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDC-VIMKDKTTNQS 57 (105)
T ss_dssp SSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEE-EEEECSSSCCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEE-EEeeCCCCCCc
Confidence 457899999999999999999999999999876 56688877764
No 221
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=98.94 E-value=6.7e-10 Score=68.00 Aligned_cols=41 Identities=7% Similarity=0.140 Sum_probs=35.2
Q ss_pred eEEEEcCCCCCCChHHHHhhhcCCC--ceeeeeEEEEcCCCCCC
Q psy11608 56 TCVWVDGVAGKCGTGEHNRVNLGYG--KSLATTCVWVDGVAGKC 97 (99)
Q Consensus 56 ~~lfVg~l~~~~s~~~L~~~F~~fG--~i~~~~~v~~d~~~g~~ 97 (99)
.+|||||||.++++++|+++|++|| +|.++ .+..|+.+|++
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v-~i~~~~~~g~~ 44 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEI-KFFENRANGQS 44 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCE-EEEECTTTCCE
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEE-EEEecCCCCcc
Confidence 4799999999999999999999999 89876 56689888874
No 222
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=98.94 E-value=8.8e-10 Score=69.43 Aligned_cols=45 Identities=16% Similarity=0.159 Sum_probs=38.3
Q ss_pred CCCceEEEEcCCCCCCChHHHHhhhcCCCceeeeeEEEEcCCCCCC
Q psy11608 52 SLATTCVWVDGVAGKCGTGEHNRVNLGYGKSLATTCVWVDGVAGKC 97 (99)
Q Consensus 52 ~~~~~~lfVg~l~~~~s~~~L~~~F~~fG~i~~~~~v~~d~~~g~~ 97 (99)
..++++|||+|||.++++++|+++|++||+|..+ .+..|+.+|++
T Consensus 23 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v-~i~~~~~~~~~ 67 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNI-HLNLDRRTGFS 67 (110)
T ss_dssp BTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEE-ECCBCTTTSSB
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEE-EEEecCCCCCc
Confidence 3567899999999999999999999999999775 55578777764
No 223
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=98.94 E-value=1.9e-10 Score=72.69 Aligned_cols=48 Identities=13% Similarity=0.086 Sum_probs=42.5
Q ss_pred eEEEEEeeCC--CCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecC
Q psy11608 3 MYFVDIKKQS--SASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGK 51 (99)
Q Consensus 3 I~~v~ik~~~--~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k 51 (99)
|.+|.|.++. +++|||||+|.+.++|++|++ |||..++++.|+|.++.
T Consensus 41 v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~a~ 90 (107)
T 2lmi_A 41 ENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVEVYEIN 90 (107)
T ss_dssp TTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCCCEECC
T ss_pred cceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEEEEECC
Confidence 5677777664 799999999999999999999 99999999999988764
No 224
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=98.93 E-value=9.6e-10 Score=69.85 Aligned_cols=43 Identities=9% Similarity=0.246 Sum_probs=37.8
Q ss_pred CceEEEEcCCCCCCChHHHHhhhcCCCceeeeeEEEEcCCCCCC
Q psy11608 54 ATTCVWVDGVAGKCGTGEHNRVNLGYGKSLATTCVWVDGVAGKC 97 (99)
Q Consensus 54 ~~~~lfVg~l~~~~s~~~L~~~F~~fG~i~~~~~v~~d~~~g~~ 97 (99)
+.++|||+|||.++++++|+++|++||+|.++ .+..|+.+|++
T Consensus 24 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v-~i~~~~~~g~~ 66 (115)
T 2cpz_A 24 EGANLFIYHLPQEFGDQDLLQMFMPFGNVVSA-KVFIDKQTNLS 66 (115)
T ss_dssp TTCCEEEESCCSSCCHHHHHHHHGGGSCCSEE-EEEECSSSCSE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEE-EEEECCCCCCc
Confidence 46789999999999999999999999999876 56688877764
No 225
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=98.93 E-value=1.8e-09 Score=68.46 Aligned_cols=44 Identities=18% Similarity=0.160 Sum_probs=38.0
Q ss_pred CCceEEEEcCCCCCCChHHHHhhhcCCCceeeeeEEEEcCCCCCC
Q psy11608 53 LATTCVWVDGVAGKCGTGEHNRVNLGYGKSLATTCVWVDGVAGKC 97 (99)
Q Consensus 53 ~~~~~lfVg~l~~~~s~~~L~~~F~~fG~i~~~~~v~~d~~~g~~ 97 (99)
.+.++|||+|||.++++++|+++|++||.|..+ .+..|+.+|++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v-~i~~~~~~~~~ 56 (115)
T 2dgo_A 13 SNHFHVFVGDLSPEITTEDIKAAFAPFGRISDA-RVVKDMATGKS 56 (115)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEE-EEEECTTTCCE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEE-EEEEcCCCCCc
Confidence 457899999999999999999999999999876 55588777764
No 226
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=98.93 E-value=1.6e-10 Score=75.49 Aligned_cols=47 Identities=19% Similarity=0.391 Sum_probs=42.4
Q ss_pred EEEeeCC---CCCCeEEEEeCCHHHHHHHHHhhCCe----EeCCeEEEEeecCCC
Q psy11608 6 VDIKKQS---SASAFAFVQYTDIASVVRAMRAMDGE----YVGHNRVNLGYGKSL 53 (99)
Q Consensus 6 v~ik~~~---~s~gfaFV~F~~~~~a~~Ai~~m~G~----~i~~~~i~v~~~k~~ 53 (99)
|.|.+|. +++|||||+|.+. +|++|++.|||. .+.|++|+|.++++.
T Consensus 55 v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~l~V~~a~~~ 108 (131)
T 2m2b_A 55 VRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKTINVEFAKGS 108 (131)
T ss_dssp EECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCCCCCEECCCS
T ss_pred EEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEEEEEEECCCC
Confidence 7777764 7999999999999 999999999999 999999999998754
No 227
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=98.92 E-value=1.2e-09 Score=72.29 Aligned_cols=49 Identities=18% Similarity=0.192 Sum_probs=43.3
Q ss_pred ceEEEEEeeCC--CCCCeEEEEeCCHHHHHHHHHhhCCeEeC---CeEEEEeec
Q psy11608 2 VMYFVDIKKQS--SASAFAFVQYTDIASVVRAMRAMDGEYVG---HNRVNLGYG 50 (99)
Q Consensus 2 ~I~~v~ik~~~--~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~---~~~i~v~~~ 50 (99)
.|.+|.+.++. +++|||||+|.+.++|++|++.|||..+. +++|+|.|+
T Consensus 121 ~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~~a 174 (175)
T 3nmr_A 121 QIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFA 174 (175)
T ss_dssp CEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEEEC
T ss_pred CEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEEec
Confidence 58889998875 67999999999999999999999998665 389999886
No 228
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=98.92 E-value=1.2e-09 Score=71.99 Aligned_cols=49 Identities=14% Similarity=0.233 Sum_probs=43.8
Q ss_pred ceEEEEEeeCC---CCCCeEEEEeCCHHHHHHHHHhhCCeEeCC--eEEEEeec
Q psy11608 2 VMYFVDIKKQS---SASAFAFVQYTDIASVVRAMRAMDGEYVGH--NRVNLGYG 50 (99)
Q Consensus 2 ~I~~v~ik~~~---~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~--~~i~v~~~ 50 (99)
.|++|.+.++. +++|||||+|.+.++|++|++.|||..+.+ ++|+|.|+
T Consensus 115 ~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 115 SIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred cEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEEeC
Confidence 57888888874 678999999999999999999999999977 89998875
No 229
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.92 E-value=1.2e-09 Score=68.04 Aligned_cols=44 Identities=16% Similarity=0.144 Sum_probs=37.7
Q ss_pred CCCceEEEEcCCCCCCChHHHHhhhcC-CCceeeeeEEEEcCCCCCC
Q psy11608 52 SLATTCVWVDGVAGKCGTGEHNRVNLG-YGKSLATTCVWVDGVAGKC 97 (99)
Q Consensus 52 ~~~~~~lfVg~l~~~~s~~~L~~~F~~-fG~i~~~~~v~~d~~~g~~ 97 (99)
+.++.+|||+|||+++++++|+++|++ ||+|..+ .+..|+ +|++
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v-~i~~~~-~g~~ 50 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGG-KVVLDQ-TGVS 50 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEE-EEEECT-TCCE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEE-EEEECC-CCCc
Confidence 346789999999999999999999999 9999876 565887 7753
No 230
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=98.92 E-value=2.2e-09 Score=67.17 Aligned_cols=43 Identities=12% Similarity=0.131 Sum_probs=37.2
Q ss_pred CCceEEEEcCCCCCCChHHHHhhhcCCCceeeeeEEEEcCCCCCC
Q psy11608 53 LATTCVWVDGVAGKCGTGEHNRVNLGYGKSLATTCVWVDGVAGKC 97 (99)
Q Consensus 53 ~~~~~lfVg~l~~~~s~~~L~~~F~~fG~i~~~~~v~~d~~~g~~ 97 (99)
.+.++|||+|||+++++++|+++|++||+|..+ .+..|+ +|++
T Consensus 27 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v-~i~~~~-~g~~ 69 (107)
T 3ulh_A 27 ETGGKLLVSNLDFGVSDADIQELFAEFGTLKKA-AVHYDR-SGRS 69 (107)
T ss_dssp CCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEE-EEEECT-TSCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEE-EEEECC-CCCc
Confidence 457899999999999999999999999999876 555887 6763
No 231
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.92 E-value=7.6e-10 Score=68.76 Aligned_cols=45 Identities=16% Similarity=0.152 Sum_probs=37.9
Q ss_pred CCCceEEEEcCCCCCCChHHHHhhhcCCCceeeeeEEEEcCCCCCC
Q psy11608 52 SLATTCVWVDGVAGKCGTGEHNRVNLGYGKSLATTCVWVDGVAGKC 97 (99)
Q Consensus 52 ~~~~~~lfVg~l~~~~s~~~L~~~F~~fG~i~~~~~v~~d~~~g~~ 97 (99)
+.+.++|||+|||+++++++|+++|++||+|..+ .+..|+.+|++
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v-~i~~~~~~~~~ 53 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEV-VVVKDRETQRS 53 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEE-EECCCSSSCSC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE-EEEeCCCCCCc
Confidence 3457899999999999999999999999999775 55577777654
No 232
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.91 E-value=5.9e-10 Score=70.34 Aligned_cols=47 Identities=26% Similarity=0.222 Sum_probs=40.9
Q ss_pred EEEEeeCC--CCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecCC
Q psy11608 5 FVDIKKQS--SASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKS 52 (99)
Q Consensus 5 ~v~ik~~~--~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k~ 52 (99)
+|.|.++. +++|||||+|.+.++|++|+ ++||..++++.|+|..+..
T Consensus 43 ~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~~~~ 91 (102)
T 1wez_A 43 RVHIEIGPDGRVTGEADVEFATHEDAVAAM-AKDKANMQHRYVELFLNST 91 (102)
T ss_dssp EEEEEESSSSCEEEEEEEECSSSHHHHHHH-TTSSCCSSSSCCEEEEECC
T ss_pred EEEEEECCCCCEeeEEEEEECCHHHHHHHH-HhCCCeECCcEEEEEECCC
Confidence 77777664 78999999999999999999 5899999999999887654
No 233
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=98.91 E-value=2.3e-09 Score=68.09 Aligned_cols=43 Identities=9% Similarity=0.120 Sum_probs=37.4
Q ss_pred CCceEEEEcCCCCCCChHHHHhhhcCCCceeeeeEEEEcCCCCC
Q psy11608 53 LATTCVWVDGVAGKCGTGEHNRVNLGYGKSLATTCVWVDGVAGK 96 (99)
Q Consensus 53 ~~~~~lfVg~l~~~~s~~~L~~~F~~fG~i~~~~~v~~d~~~g~ 96 (99)
.+.++|||+|||+++++++|+++|++||+|..+ .+..|+.+|+
T Consensus 24 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v-~i~~~~~~g~ 66 (108)
T 2jrs_A 24 AGPMRLYVGSLHFNITEDMLRGIFEPFGRIESI-QLMMDSETGR 66 (108)
T ss_dssp SSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEE-EEEEETTTTE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEE-EEEEcCCCCc
Confidence 346899999999999999999999999999876 5558887765
No 234
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.91 E-value=7.6e-10 Score=71.88 Aligned_cols=49 Identities=6% Similarity=0.013 Sum_probs=41.9
Q ss_pred ceEEEEEeeCCCCCCeEEEEeCCHHHHHHHHHhhCC--eEeCCeEEEEeecCCC
Q psy11608 2 VMYFVDIKKQSSASAFAFVQYTDIASVVRAMRAMDG--EYVGHNRVNLGYGKSL 53 (99)
Q Consensus 2 ~I~~v~ik~~~~s~gfaFV~F~~~~~a~~Ai~~m~G--~~i~~~~i~v~~~k~~ 53 (99)
.|.+|.|. +++|||||+|.+.++|+.|++.|++ ..+.|++|+|.|++..
T Consensus 52 ~V~~v~i~---~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~~ 102 (112)
T 1x4f_A 52 KIKNYILM---RMKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLSEKY 102 (112)
T ss_dssp CCSEEEEE---TTTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEECSC
T ss_pred CEEEEEEe---cCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEECccc
Confidence 46788886 4699999999999999999998864 5689999999998654
No 235
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=98.91 E-value=7.2e-10 Score=66.81 Aligned_cols=41 Identities=15% Similarity=0.074 Sum_probs=34.9
Q ss_pred CceEEEEcCCCCCCChHHHHhhhcCCCceeeeeEEEEcCCCC
Q psy11608 54 ATTCVWVDGVAGKCGTGEHNRVNLGYGKSLATTCVWVDGVAG 95 (99)
Q Consensus 54 ~~~~lfVg~l~~~~s~~~L~~~F~~fG~i~~~~~v~~d~~~g 95 (99)
..++|||+|||.++++++|+++|++||+|.++ .+..|+.++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~-~i~~~~~~~ 43 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMI-DMPVERMHP 43 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEE-ECCEETTEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEE-EEEeCCCCC
Confidence 46799999999999999999999999999775 555777544
No 236
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.91 E-value=3.8e-09 Score=69.60 Aligned_cols=49 Identities=16% Similarity=0.297 Sum_probs=42.1
Q ss_pred ceEEEEEeeCCCCCCe-EEEEeCCHHHHHHHHHhhCCeEeCC--eEEEEeecCCC
Q psy11608 2 VMYFVDIKKQSSASAF-AFVQYTDIASVVRAMRAMDGEYVGH--NRVNLGYGKSL 53 (99)
Q Consensus 2 ~I~~v~ik~~~~s~gf-aFV~F~~~~~a~~Ai~~m~G~~i~~--~~i~v~~~k~~ 53 (99)
.|.+|.|.+. .|| |||+|.+.++|+.|+++|||..+.+ ++|+|.|+++.
T Consensus 51 ~V~~v~i~~~---~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~~ 102 (124)
T 2e5i_A 51 KVQRIVIFKR---NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPT 102 (124)
T ss_dssp CEEEEEEEES---SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCSCS
T ss_pred CEEEEEEEeC---CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEecCC
Confidence 4778888653 396 9999999999999999999999976 68999999864
No 237
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.90 E-value=1.6e-09 Score=68.96 Aligned_cols=42 Identities=12% Similarity=0.122 Sum_probs=37.0
Q ss_pred ceEEEEcCCCCCCChHHHHhhhcCCCceeeeeEEEEcCCCCCC
Q psy11608 55 TTCVWVDGVAGKCGTGEHNRVNLGYGKSLATTCVWVDGVAGKC 97 (99)
Q Consensus 55 ~~~lfVg~l~~~~s~~~L~~~F~~fG~i~~~~~v~~d~~~g~~ 97 (99)
.++|||+|||.++++++|+++|++||+|..+ .+..|+.+|++
T Consensus 27 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v-~i~~~~~~g~~ 68 (116)
T 1x4b_A 27 FRKLFIGGLSFETTEESLRNYYEQWGKLTDC-VVMRDPASKRS 68 (116)
T ss_dssp HTEEEEECCTTCCCHHHHHHHHTSSCCCSEE-EEECCTTTSSC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEE-EEEECCCCCCc
Confidence 5789999999999999999999999999876 55588877764
No 238
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=98.90 E-value=3.6e-10 Score=66.53 Aligned_cols=40 Identities=15% Similarity=0.176 Sum_probs=34.6
Q ss_pred EEEEcCCCCCCChHHHHhhhcCCCceeeeeEEEEcCCCCCC
Q psy11608 57 CVWVDGVAGKCGTGEHNRVNLGYGKSLATTCVWVDGVAGKC 97 (99)
Q Consensus 57 ~lfVg~l~~~~s~~~L~~~F~~fG~i~~~~~v~~d~~~g~~ 97 (99)
+|||+|||+++++++|+++|++||+|.++ .+..|+.+|++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v-~i~~~~~~~~~ 40 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESI-ELPMDNKTNKR 40 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEE-CCCCSCCCSSS
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEE-EEEecCCCCCc
Confidence 58999999999999999999999999776 45578777764
No 239
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.90 E-value=9.9e-10 Score=67.78 Aligned_cols=40 Identities=5% Similarity=-0.046 Sum_probs=34.7
Q ss_pred CCceEEEEcCCCCCCChHHHHhhhcCCCceeeeeEEEEcCC
Q psy11608 53 LATTCVWVDGVAGKCGTGEHNRVNLGYGKSLATTCVWVDGV 93 (99)
Q Consensus 53 ~~~~~lfVg~l~~~~s~~~L~~~F~~fG~i~~~~~v~~d~~ 93 (99)
.+.++|||+|||.++++++|+++|++||+|..+ .+..|+.
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v-~i~~~~~ 42 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSC-TISKKKN 42 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEE-EEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEE-EEEecCC
Confidence 457899999999999999999999999999876 5556665
No 240
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.90 E-value=1.4e-09 Score=69.03 Aligned_cols=42 Identities=12% Similarity=0.096 Sum_probs=36.6
Q ss_pred ceEEEEcCCCCCCChHHHHhhhcCCCceeeeeEEEEcCCCCCC
Q psy11608 55 TTCVWVDGVAGKCGTGEHNRVNLGYGKSLATTCVWVDGVAGKC 97 (99)
Q Consensus 55 ~~~lfVg~l~~~~s~~~L~~~F~~fG~i~~~~~v~~d~~~g~~ 97 (99)
.++|||+|||.++++++|+++|++||.|..+ .+..|+.+|++
T Consensus 25 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v-~i~~~~~~g~~ 66 (114)
T 2cq4_A 25 ARTVFCMQLAARIRPRDLEDFFSAVGKVRDV-RIISDRNSRRS 66 (114)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHTTTSCEEEE-EECCSCCSSSC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEeEE-EEEecCCCCcc
Confidence 4789999999999999999999999999876 55578877664
No 241
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=98.90 E-value=1.5e-09 Score=74.77 Aligned_cols=51 Identities=14% Similarity=0.162 Sum_probs=46.4
Q ss_pred ceEEEEEeeC--CCCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecCC
Q psy11608 2 VMYFVDIKKQ--SSASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKS 52 (99)
Q Consensus 2 ~I~~v~ik~~--~~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k~ 52 (99)
+|.+|.|..+ +.++|||||+|.+.++|++|++.|||..+.+++|+|.++..
T Consensus 114 ~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a~~ 166 (177)
T 2f3j_A 114 TLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVAS 166 (177)
T ss_dssp CCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEESS
T ss_pred CeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEecC
Confidence 5778888877 47899999999999999999999999999999999998764
No 242
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.90 E-value=1.2e-09 Score=68.25 Aligned_cols=44 Identities=11% Similarity=0.056 Sum_probs=36.3
Q ss_pred CCceEEEEcCCCCCCChHHHHhhhcCCCceeeeeEEEEc-CCCCCC
Q psy11608 53 LATTCVWVDGVAGKCGTGEHNRVNLGYGKSLATTCVWVD-GVAGKC 97 (99)
Q Consensus 53 ~~~~~lfVg~l~~~~s~~~L~~~F~~fG~i~~~~~v~~d-~~~g~~ 97 (99)
.+.++|||+|||.++++++|+++|++||+|..+ .+..| +.+|++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v-~i~~~~~~~~~~ 57 (107)
T 2cph_A 13 QTTSKILVRNIPFQANQREIRELFSTFGELKTV-RLPKKMTGTGAH 57 (107)
T ss_dssp SCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEE-ECCCCCSSSCSS
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEE-EEecCCCCCCCc
Confidence 456889999999999999999999999999765 44466 556654
No 243
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=98.90 E-value=1.5e-09 Score=78.82 Aligned_cols=50 Identities=12% Similarity=0.107 Sum_probs=43.6
Q ss_pred ceEEEEEeeCCCCCCeEEEEeCCHHHHHHHHHhhCCeEe------------CCeEEEEeecCCCC
Q psy11608 2 VMYFVDIKKQSSASAFAFVQYTDIASVVRAMRAMDGEYV------------GHNRVNLGYGKSLA 54 (99)
Q Consensus 2 ~I~~v~ik~~~~s~gfaFV~F~~~~~a~~Ai~~m~G~~i------------~~~~i~v~~~k~~~ 54 (99)
.|++|.|.. ++|||||+|.+.++|+.|+++|+|..+ .+++|+|.|++..|
T Consensus 169 ~I~~v~v~~---~kG~AFV~F~~~~~Ae~A~~am~g~~l~~~~~~e~~~~~~gr~L~V~wA~~~p 230 (240)
T 3u1l_A 169 DIDRIRYVE---SKNCGFVKFKYQANAEFAKEAMSNQTLLLPSDKEWDDRREGTGLLVKWANEDP 230 (240)
T ss_dssp CEEEEEEEG---GGTEEEEEESSHHHHHHHHHHHTTCCCCCTTSTTGGGGGGSCCCEEEECC---
T ss_pred CEEEEEEEC---CCCEEEEEeCCHHHHHHHHHHhCCCEEeccccccccccCCCCEEEEEEccCCC
Confidence 588898874 699999999999999999999999999 89999999998654
No 244
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=98.90 E-value=1.3e-09 Score=71.44 Aligned_cols=45 Identities=16% Similarity=0.142 Sum_probs=38.9
Q ss_pred CCCceEEEEcCCCCCCChHHHHhhhcCCCceeeeeEEEEcCCCCCC
Q psy11608 52 SLATTCVWVDGVAGKCGTGEHNRVNLGYGKSLATTCVWVDGVAGKC 97 (99)
Q Consensus 52 ~~~~~~lfVg~l~~~~s~~~L~~~F~~fG~i~~~~~v~~d~~~g~~ 97 (99)
+.++++|||+|||.++++++|+++|++||+|..+ .+..|+.+|++
T Consensus 43 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v-~i~~d~~tg~~ 87 (129)
T 2kxn_B 43 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADV-SIVYDQQSRRS 87 (129)
T ss_dssp CCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEE-EEECCSSSSCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEE-EEEecCCCCcc
Confidence 4567899999999999999999999999999876 55588877764
No 245
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=98.90 E-value=1.8e-09 Score=67.13 Aligned_cols=42 Identities=19% Similarity=0.257 Sum_probs=36.2
Q ss_pred CceEEEEcCCCCCCChHHHHhhhcCCCceeeeeEEEEcCCCCCC
Q psy11608 54 ATTCVWVDGVAGKCGTGEHNRVNLGYGKSLATTCVWVDGVAGKC 97 (99)
Q Consensus 54 ~~~~lfVg~l~~~~s~~~L~~~F~~fG~i~~~~~v~~d~~~g~~ 97 (99)
+.++|||+|||.++++++|+++|++||+|..+ .+..|+ +|++
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v-~i~~~~-~g~~ 49 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEV-KIITDR-TGVS 49 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEEEE-EEEECT-TSCE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEE-EEEECC-CCCc
Confidence 35789999999999999999999999999876 555887 6653
No 246
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=98.89 E-value=1.6e-09 Score=66.35 Aligned_cols=43 Identities=14% Similarity=0.032 Sum_probs=36.5
Q ss_pred CceEEEEcCCCCCCChHHHHhhhcCCCceeeeeEEEEcCCCCCC
Q psy11608 54 ATTCVWVDGVAGKCGTGEHNRVNLGYGKSLATTCVWVDGVAGKC 97 (99)
Q Consensus 54 ~~~~lfVg~l~~~~s~~~L~~~F~~fG~i~~~~~v~~d~~~g~~ 97 (99)
+.++|||+|||.++++++|+++|++||+|..+ .+..|+.+|++
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~-~~~~~~~~g~~ 56 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGS-VCLKYNEKGMP 56 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTC-CEEEECTTSCE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccce-EEEEeCCCCCE
Confidence 45899999999999999999999999999775 45578877754
No 247
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=98.89 E-value=1.8e-09 Score=70.91 Aligned_cols=49 Identities=8% Similarity=0.251 Sum_probs=42.9
Q ss_pred ceEEEEEeeCC---CCCCeEEEEeCCHHHHHHHHHhhCCeEeCCe--EEEEeec
Q psy11608 2 VMYFVDIKKQS---SASAFAFVQYTDIASVVRAMRAMDGEYVGHN--RVNLGYG 50 (99)
Q Consensus 2 ~I~~v~ik~~~---~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~--~i~v~~~ 50 (99)
+|.+|.+.++. .++|||||+|.+.++|++|++.|||..++|+ +|+|.|+
T Consensus 114 ~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 114 RIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFA 167 (167)
T ss_dssp CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred CEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEEeC
Confidence 57888888764 5799999999999999999999999999986 4888875
No 248
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.89 E-value=3.7e-09 Score=65.90 Aligned_cols=43 Identities=9% Similarity=0.004 Sum_probs=37.0
Q ss_pred CCceEEEEcCCCCCCChHHHHhhhcCCCceeeeeEEEEcCCCCCC
Q psy11608 53 LATTCVWVDGVAGKCGTGEHNRVNLGYGKSLATTCVWVDGVAGKC 97 (99)
Q Consensus 53 ~~~~~lfVg~l~~~~s~~~L~~~F~~fG~i~~~~~v~~d~~~g~~ 97 (99)
.+.++|||+|||.++++++|+++|++|| |.++ .+..|+.+|++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v-~i~~~~~~g~~ 55 (103)
T 2dng_A 13 EPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSV-RLVRDKDTDKF 55 (103)
T ss_dssp SSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEE-EEEECSSSCSE
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEE-EEeecCCCCcc
Confidence 4568999999999999999999999997 8775 66689887764
No 249
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=98.88 E-value=1.9e-09 Score=69.35 Aligned_cols=45 Identities=18% Similarity=0.184 Sum_probs=38.0
Q ss_pred CCCceEEEEcCCCCCCChHHHHhhhcCCCceeeeeEEEEcCCCCCC
Q psy11608 52 SLATTCVWVDGVAGKCGTGEHNRVNLGYGKSLATTCVWVDGVAGKC 97 (99)
Q Consensus 52 ~~~~~~lfVg~l~~~~s~~~L~~~F~~fG~i~~~~~v~~d~~~g~~ 97 (99)
..++++|||+|||.++++++|+++|++||+|..+ .+..|+.+|++
T Consensus 19 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v-~i~~~~~~~~~ 63 (126)
T 3ex7_B 19 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNI-HLNLDRRTGYL 63 (126)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEE-ECCBCTTTSSB
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEE-EEEecCCCCcc
Confidence 3457899999999999999999999999999765 55578777764
No 250
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=98.88 E-value=2.3e-09 Score=67.97 Aligned_cols=45 Identities=11% Similarity=-0.009 Sum_probs=36.4
Q ss_pred CCCceEEEEcCCCCCCChHHHHhhhcCCCceeeeeEEEEcCCCCCC
Q psy11608 52 SLATTCVWVDGVAGKCGTGEHNRVNLGYGKSLATTCVWVDGVAGKC 97 (99)
Q Consensus 52 ~~~~~~lfVg~l~~~~s~~~L~~~F~~fG~i~~~~~v~~d~~~g~~ 97 (99)
+.++++|||+|||.++++++|+++|++||.|..+ .+..|..+.+|
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v-~i~~~~~~~g~ 49 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQI-RVGNTPETRGT 49 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEE-EEECSTTTTTC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEE-EEeeCCCCCcE
Confidence 3457899999999999999999999999999775 44466655433
No 251
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=98.88 E-value=1.9e-09 Score=66.36 Aligned_cols=33 Identities=15% Similarity=0.174 Sum_probs=29.4
Q ss_pred CCceEEEEcCCCCCCChHHHHhhhcCCCceeee
Q psy11608 53 LATTCVWVDGVAGKCGTGEHNRVNLGYGKSLAT 85 (99)
Q Consensus 53 ~~~~~lfVg~l~~~~s~~~L~~~F~~fG~i~~~ 85 (99)
.+.++|||||||.++++++|+++|++||+|.++
T Consensus 9 ~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v 41 (89)
T 3d2w_A 9 HHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDV 41 (89)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHTTTSCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEE
Confidence 356899999999999999999999999999765
No 252
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.88 E-value=2.9e-09 Score=64.64 Aligned_cols=33 Identities=18% Similarity=0.277 Sum_probs=30.2
Q ss_pred CCceEEEEcCCCCCCChHHHHhhhcCCCceeee
Q psy11608 53 LATTCVWVDGVAGKCGTGEHNRVNLGYGKSLAT 85 (99)
Q Consensus 53 ~~~~~lfVg~l~~~~s~~~L~~~F~~fG~i~~~ 85 (99)
.++++|||+|||.++++++|+++|++||+|.++
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v 35 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDV 35 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEE
Confidence 457899999999999999999999999999764
No 253
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=98.87 E-value=1.8e-09 Score=73.13 Aligned_cols=42 Identities=12% Similarity=0.063 Sum_probs=37.2
Q ss_pred ceEEEEcCCCCCCChHHHHhhhcCCC--ceeeeeEEEEcCCCCCC
Q psy11608 55 TTCVWVDGVAGKCGTGEHNRVNLGYG--KSLATTCVWVDGVAGKC 97 (99)
Q Consensus 55 ~~~lfVg~l~~~~s~~~L~~~F~~fG--~i~~~~~v~~d~~~g~~ 97 (99)
.++|||||||.++++++|+++|++|| +|.++ .+..|+.+|++
T Consensus 55 ~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v-~i~~d~~tg~s 98 (156)
T 3n9u_C 55 RAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVEL-KFAENRANGQS 98 (156)
T ss_dssp -CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEE-EEEECTTTCCE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEE-EEEecCCCCcc
Confidence 47899999999999999999999999 89876 56689999875
No 254
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=98.87 E-value=4.9e-10 Score=68.18 Aligned_cols=41 Identities=12% Similarity=0.139 Sum_probs=35.9
Q ss_pred eEEEEcCCCCCCChHHHHhhhcCCCceeeeeEEEEcCCCCCC
Q psy11608 56 TCVWVDGVAGKCGTGEHNRVNLGYGKSLATTCVWVDGVAGKC 97 (99)
Q Consensus 56 ~~lfVg~l~~~~s~~~L~~~F~~fG~i~~~~~v~~d~~~g~~ 97 (99)
++|||+|||.++++++|+++|++||+|.++ .+..|+.+|++
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v-~i~~~~~~~~~ 42 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNV-KLIYDRETKKP 42 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEE-EECCCSSSCCC
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEE-EEEEcCCCCCc
Confidence 589999999999999999999999999876 55578877764
No 255
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.87 E-value=8e-10 Score=69.39 Aligned_cols=46 Identities=13% Similarity=0.018 Sum_probs=37.7
Q ss_pred CCCCceEEEEcCCCCCCChHHHHhhhcCCCc-eeeeeEEE-EcCCCCCC
Q psy11608 51 KSLATTCVWVDGVAGKCGTGEHNRVNLGYGK-SLATTCVW-VDGVAGKC 97 (99)
Q Consensus 51 k~~~~~~lfVg~l~~~~s~~~L~~~F~~fG~-i~~~~~v~-~d~~~g~~ 97 (99)
.+.+.++|||+|||.++++++|+++|++||+ |..+ .+. .|+.+|++
T Consensus 4 ~s~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v-~i~~~~~~~g~~ 51 (109)
T 2dis_A 4 GSSGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDV-IVYASAADKMKN 51 (109)
T ss_dssp CCCCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEE-ECCSSSCTTTTT
T ss_pred cccCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEE-EEEccCCCCCCc
Confidence 3456789999999999999999999999998 8765 443 57766654
No 256
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=98.87 E-value=2.7e-09 Score=68.35 Aligned_cols=46 Identities=11% Similarity=0.264 Sum_probs=40.2
Q ss_pred ceEEEEEeeCCCCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeE-----EEEeecC
Q psy11608 2 VMYFVDIKKQSSASAFAFVQYTDIASVVRAMRAMDGEYVGHNR-----VNLGYGK 51 (99)
Q Consensus 2 ~I~~v~ik~~~~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~-----i~v~~~k 51 (99)
.|.+|.|..+ |||||+|.+.++|++|++.|||..+.+++ |++...+
T Consensus 42 ~v~~~~i~~~----g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~~~~ 92 (115)
T 3beg_B 42 DVCYADVYRD----GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDG 92 (115)
T ss_dssp CEEEEEECTT----SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEEECC
T ss_pred CeEEEEEecC----CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEeccCC
Confidence 5888988876 99999999999999999999999999988 6665543
No 257
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=98.87 E-value=4.9e-09 Score=81.22 Aligned_cols=52 Identities=15% Similarity=0.289 Sum_probs=47.2
Q ss_pred ceEEEEEeeC---CCCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecCCC
Q psy11608 2 VMYFVDIKKQ---SSASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKSL 53 (99)
Q Consensus 2 ~I~~v~ik~~---~~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k~~ 53 (99)
+|.+|.|..+ +.++|||||+|.+.++|++||+.|||..|.+++|+|.++++.
T Consensus 128 ~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a~~~ 182 (437)
T 3pgw_S 128 PIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERGR 182 (437)
T ss_pred CeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEeCCC
Confidence 5888988876 378999999999999999999999999999999999998754
No 258
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=98.87 E-value=3e-09 Score=65.11 Aligned_cols=42 Identities=19% Similarity=0.165 Sum_probs=35.9
Q ss_pred CCceEEEEcCCCCCCChHHHHhhhcCCCceeeeeEEEEcCCCCC
Q psy11608 53 LATTCVWVDGVAGKCGTGEHNRVNLGYGKSLATTCVWVDGVAGK 96 (99)
Q Consensus 53 ~~~~~lfVg~l~~~~s~~~L~~~F~~fG~i~~~~~v~~d~~~g~ 96 (99)
.+.++|||+|||+++++++|+++|++||+|..+ .+..|+. |+
T Consensus 14 ~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v-~i~~~~~-g~ 55 (95)
T 2ywk_A 14 EADRTVFVGNLEARVREEILYELFLQAGPLTKV-TICKDRE-GK 55 (95)
T ss_dssp TGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEE-EEEECTT-SC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEE-EEEECCC-CC
Confidence 457899999999999999999999999999876 5557764 54
No 259
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.87 E-value=2.3e-09 Score=68.00 Aligned_cols=33 Identities=15% Similarity=0.256 Sum_probs=30.6
Q ss_pred CCceEEEEcCCCCCCChHHHHhhhcCCCceeee
Q psy11608 53 LATTCVWVDGVAGKCGTGEHNRVNLGYGKSLAT 85 (99)
Q Consensus 53 ~~~~~lfVg~l~~~~s~~~L~~~F~~fG~i~~~ 85 (99)
.|+++|||+|||.++++++|+++|++||+|.++
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v 45 (101)
T 2cq1_A 13 APSRVLHIRKLPGEVTETEVIALGLPFGKVTNI 45 (101)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEE
Confidence 467899999999999999999999999999765
No 260
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.87 E-value=3.8e-09 Score=66.86 Aligned_cols=43 Identities=14% Similarity=0.252 Sum_probs=36.8
Q ss_pred CCceEEEEcCCCCCCChHHHHhhhcCCCceeeeeEEEEcCCCCCC
Q psy11608 53 LATTCVWVDGVAGKCGTGEHNRVNLGYGKSLATTCVWVDGVAGKC 97 (99)
Q Consensus 53 ~~~~~lfVg~l~~~~s~~~L~~~F~~fG~i~~~~~v~~d~~~g~~ 97 (99)
.+.++|||+|||+++++++|+++|++||+|..+ .+..|+ +|++
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~-~i~~~~-~g~~ 65 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPFGQVIST-RILRDS-SGTS 65 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEE-EEEECS-SSCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEE-EEEECC-CCCc
Confidence 456899999999999999999999999999876 555787 6653
No 261
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.86 E-value=5.5e-10 Score=68.68 Aligned_cols=43 Identities=9% Similarity=0.010 Sum_probs=36.4
Q ss_pred CceEEEEcCCCCCCChHHHHhhhcCCCceeeeeEEEEcCCCCC
Q psy11608 54 ATTCVWVDGVAGKCGTGEHNRVNLGYGKSLATTCVWVDGVAGK 96 (99)
Q Consensus 54 ~~~~lfVg~l~~~~s~~~L~~~F~~fG~i~~~~~v~~d~~~g~ 96 (99)
+.++|||+|||+++++++|+++|++||+|..+..+..|+.+|.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~ 56 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAV 56 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEE
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCE
Confidence 4678999999999999999999999999977644557776654
No 262
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.86 E-value=1.6e-09 Score=67.33 Aligned_cols=42 Identities=14% Similarity=0.126 Sum_probs=36.6
Q ss_pred ceEEEEcCCCCCCChHHHHhhhcCCCceeeeeEEEEcCCCCCC
Q psy11608 55 TTCVWVDGVAGKCGTGEHNRVNLGYGKSLATTCVWVDGVAGKC 97 (99)
Q Consensus 55 ~~~lfVg~l~~~~s~~~L~~~F~~fG~i~~~~~v~~d~~~g~~ 97 (99)
.++|||+|||.++++++|+++|++||+|..+ .+..|+.+|++
T Consensus 8 ~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~-~i~~~~~~g~~ 49 (104)
T 1p1t_A 8 LRSVFVGNIPYEATEEQLKDIFSEVGPVVSF-RLVYDRETGKP 49 (104)
T ss_dssp HSCEEEESCCTTSCHHHHHHHHHTTSCCSEE-EEEEETTTTEE
T ss_pred ccEEEEeCCCCcCCHHHHHHHHHhcCCeeEE-EEEeCCCCCcc
Confidence 5789999999999999999999999999876 55588777653
No 263
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.86 E-value=3.5e-09 Score=66.75 Aligned_cols=43 Identities=12% Similarity=0.166 Sum_probs=36.1
Q ss_pred CCCceEEEEcCCCCCCChHHHHhhhcCCCceeeeeEEEEcCCCCCC
Q psy11608 52 SLATTCVWVDGVAGKCGTGEHNRVNLGYGKSLATTCVWVDGVAGKC 97 (99)
Q Consensus 52 ~~~~~~lfVg~l~~~~s~~~L~~~F~~fG~i~~~~~v~~d~~~g~~ 97 (99)
+.+..+|||+|||.++++++|+++|++||.+ ++ .++.|+ +|++
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v-~i~~d~-~g~~ 54 (102)
T 1wez_A 12 STTGHCVHMRGLPYRATENDIYNFFSPLNPM-RV-HIEIGP-DGRV 54 (102)
T ss_dssp CSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EE-EEEESS-SSCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EE-EEEECC-CCCE
Confidence 3456899999999999999999999999955 55 666888 7765
No 264
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.86 E-value=2.3e-09 Score=67.79 Aligned_cols=45 Identities=13% Similarity=0.208 Sum_probs=37.8
Q ss_pred CCceEEEEcCCCCCCChHHHHhhhcCCCceee-------eeEEEEcCCCCCC
Q psy11608 53 LATTCVWVDGVAGKCGTGEHNRVNLGYGKSLA-------TTCVWVDGVAGKC 97 (99)
Q Consensus 53 ~~~~~lfVg~l~~~~s~~~L~~~F~~fG~i~~-------~~~v~~d~~~g~~ 97 (99)
.+.++|||+|||.++++++|+++|++||.|.. -..+..|+.+|++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~ 64 (113)
T 2cpe_A 13 SDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKP 64 (113)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSB
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCe
Confidence 45789999999999999999999999999972 1366688877764
No 265
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=98.86 E-value=9.9e-10 Score=73.49 Aligned_cols=79 Identities=13% Similarity=0.117 Sum_probs=34.0
Q ss_pred CCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeec------CCCCceEEEEcCCCCCCChHHHHhhhcCCCceeeeeEE
Q psy11608 15 SAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYG------KSLATTCVWVDGVAGKCGTGEHNRVNLGYGKSLATTCV 88 (99)
Q Consensus 15 ~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~------k~~~~~~lfVg~l~~~~s~~~L~~~F~~fG~i~~~~~v 88 (99)
.|+||.+|.-++.+..|+.++...+= +...--.++ .+.+..+|||+|||.++++++|+++|++|| |+++ .+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~g-g~~~g~~~g~~~~~~~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v-~i 77 (139)
T 2hgn_A 1 MGSSHHHHHHSSGLVPRGSHMASMTG-GQQMGRGSGDSEFTVQSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRV-HI 77 (139)
T ss_dssp ---------------------------------------------CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEE-EC
T ss_pred CCcccccccCccccchhcccchhccC-CCCCCCCCCCcccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEE-EE
Confidence 37899999999998888887664432 222111111 123457899999999999999999999999 5554 55
Q ss_pred EEcCCCCCC
Q psy11608 89 WVDGVAGKC 97 (99)
Q Consensus 89 ~~d~~~g~~ 97 (99)
+.|+. |++
T Consensus 78 ~~d~~-g~s 85 (139)
T 2hgn_A 78 EIGPD-GRV 85 (139)
T ss_dssp CCSSS-SCS
T ss_pred EECCC-CCC
Confidence 57875 654
No 266
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=98.86 E-value=2.1e-09 Score=69.82 Aligned_cols=44 Identities=14% Similarity=0.154 Sum_probs=37.7
Q ss_pred CCceEEEEcCCCCCCChHHHHhhhcCCCceeeeeEEEEcCCCCCC
Q psy11608 53 LATTCVWVDGVAGKCGTGEHNRVNLGYGKSLATTCVWVDGVAGKC 97 (99)
Q Consensus 53 ~~~~~lfVg~l~~~~s~~~L~~~F~~fG~i~~~~~v~~d~~~g~~ 97 (99)
.+.++|||+|||+++++++|+++|++||+|..+ .+..|+.+|+.
T Consensus 61 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v-~i~~~~~~~~~ 104 (140)
T 2ku7_A 61 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDI-QIPLDYETEKH 104 (140)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEE-ECCCCTTTCCC
T ss_pred CCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEE-EEeecCCCCCc
Confidence 357899999999999999999999999999875 55578777764
No 267
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.86 E-value=2e-09 Score=68.42 Aligned_cols=43 Identities=14% Similarity=0.078 Sum_probs=36.5
Q ss_pred CCceEEEEcCCCCCCChHHHH---hhhcCCCceeeeeEEEEcCCCCC
Q psy11608 53 LATTCVWVDGVAGKCGTGEHN---RVNLGYGKSLATTCVWVDGVAGK 96 (99)
Q Consensus 53 ~~~~~lfVg~l~~~~s~~~L~---~~F~~fG~i~~~~~v~~d~~~g~ 96 (99)
.+.++|||+|||+++++++|+ ++|++||+|.++ .+..|+.+|+
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v-~i~~~~~~~~ 58 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKV-VINNSTSYAG 58 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEE-EEECCSSCCS
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEE-EEecCCCcCc
Confidence 457899999999999999999 999999999876 5557776543
No 268
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.86 E-value=2.8e-09 Score=65.70 Aligned_cols=43 Identities=14% Similarity=0.023 Sum_probs=36.8
Q ss_pred CceEEEEcCCCCCCChHHHHhhhcCCCceeeeeEEEEcCCCCCC
Q psy11608 54 ATTCVWVDGVAGKCGTGEHNRVNLGYGKSLATTCVWVDGVAGKC 97 (99)
Q Consensus 54 ~~~~lfVg~l~~~~s~~~L~~~F~~fG~i~~~~~v~~d~~~g~~ 97 (99)
+.++|||+|||.++++++|+++|++||.|..+ .++.|+.+|++
T Consensus 14 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~-~~~~~~~~g~~ 56 (98)
T 2cqp_A 14 GPTIIKVQNMPFTVSIDEILDFFYGYQVIPGS-VCLKYNEKGMP 56 (98)
T ss_dssp SSEEEEEESCCTTCCHHHHHHHTTTSCCCTTT-CEEEECSSSCE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCccce-EEEEECCCCCe
Confidence 45889999999999999999999999999765 44578877754
No 269
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=98.86 E-value=2e-09 Score=69.10 Aligned_cols=66 Identities=11% Similarity=0.048 Sum_probs=46.7
Q ss_pred HHHhhCCeEeCCeEEEEeecCC-------CCceEEEEcCCCCCCChHHHHhhhcCCCceeeeeEEEEcCCCCCC
Q psy11608 31 AMRAMDGEYVGHNRVNLGYGKS-------LATTCVWVDGVAGKCGTGEHNRVNLGYGKSLATTCVWVDGVAGKC 97 (99)
Q Consensus 31 Ai~~m~G~~i~~~~i~v~~~k~-------~~~~~lfVg~l~~~~s~~~L~~~F~~fG~i~~~~~v~~d~~~g~~ 97 (99)
|++.++|+.+.+......-..+ .+.++|||+|||.++++++|+++|++||+|.++ .+..|+.+|++
T Consensus 5 ~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v-~i~~~~~~~~~ 77 (124)
T 2jwn_A 5 CMQTTHSKMTAGAYTEGPPQPLSAEEKKEIDKRSVYVGNVDYGSTAQDLEAHFSSCGSINRI-TILCDKFSGHP 77 (124)
T ss_dssp CSCCCCCCCCCSCSCCCSCCSCCHHHHHHHHHTEEEEEEECTTCCHHHHHHHHHTTSCEEEE-EEEEECTTSSC
T ss_pred hhhhcCCcccCCccCCCCCCCccccccccCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEE-EEEecCCCCCc
Confidence 3456777777664211000000 125789999999999999999999999999876 56688777764
No 270
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.85 E-value=3.1e-09 Score=66.35 Aligned_cols=43 Identities=5% Similarity=-0.068 Sum_probs=35.9
Q ss_pred CCceEEEEcCCCCCCChHHHHhhhcCCCceeeeeEEEEcCCC-CCC
Q psy11608 53 LATTCVWVDGVAGKCGTGEHNRVNLGYGKSLATTCVWVDGVA-GKC 97 (99)
Q Consensus 53 ~~~~~lfVg~l~~~~s~~~L~~~F~~fG~i~~~~~v~~d~~~-g~~ 97 (99)
.+..+|||+|||.++++++|+++|++|| |.++ .+..|+.+ |++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v-~i~~~~~~~g~~ 56 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAV-RLPREPSNPERL 56 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEE-ECCBCSSCTTSB
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEE-EEecCCCCCCCc
Confidence 3568999999999999999999999999 8765 55578776 553
No 271
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=98.85 E-value=3.4e-09 Score=68.02 Aligned_cols=43 Identities=12% Similarity=0.024 Sum_probs=36.5
Q ss_pred CCceEEEEcCCCCCCChHHHHhhhcCCCceeeeeEEEEcCCCCCC
Q psy11608 53 LATTCVWVDGVAGKCGTGEHNRVNLGYGKSLATTCVWVDGVAGKC 97 (99)
Q Consensus 53 ~~~~~lfVg~l~~~~s~~~L~~~F~~fG~i~~~~~v~~d~~~g~~ 97 (99)
.+.++|||+|||.++++++|+++|++||+|..+ .+..|+ +|++
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v-~i~~~~-~g~~ 47 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEV-LLIKDR-TSKS 47 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEE-EEECST-TTTC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEE-EEEECC-CCCc
Confidence 456899999999999999999999999999775 555777 6654
No 272
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.85 E-value=2.7e-09 Score=68.07 Aligned_cols=44 Identities=18% Similarity=0.154 Sum_probs=37.1
Q ss_pred CCCceEEEEcCCCCCCChHHHHhhhcCCCce-eeeeEEEEcCCCCCC
Q psy11608 52 SLATTCVWVDGVAGKCGTGEHNRVNLGYGKS-LATTCVWVDGVAGKC 97 (99)
Q Consensus 52 ~~~~~~lfVg~l~~~~s~~~L~~~F~~fG~i-~~~~~v~~d~~~g~~ 97 (99)
+.+.++|||+|||.++++++|+++|++||.| ..+ .++.|+ +|++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v-~i~~d~-~g~~ 56 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAV-HVLVDN-NGQG 56 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTE-EECCCT-TSSC
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeE-EEEECC-CCCc
Confidence 3456899999999999999999999999999 555 565888 7764
No 273
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.85 E-value=3.9e-09 Score=65.69 Aligned_cols=38 Identities=8% Similarity=0.143 Sum_probs=33.2
Q ss_pred CCceEEEEcCCCCCCChHHHHhhhcCCCceeeeeEEEEc
Q psy11608 53 LATTCVWVDGVAGKCGTGEHNRVNLGYGKSLATTCVWVD 91 (99)
Q Consensus 53 ~~~~~lfVg~l~~~~s~~~L~~~F~~fG~i~~~~~v~~d 91 (99)
.+.++|||+|||+++++++|+++|++||+|..+ .+..|
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v-~i~~~ 50 (103)
T 2d9p_A 13 YQVVNLYVKNLDDGIDDERLRKAFSPFGTITSA-KVMME 50 (103)
T ss_dssp SSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEE-EEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEE-EEEcC
Confidence 457899999999999999999999999999876 45466
No 274
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.85 E-value=3.8e-09 Score=67.21 Aligned_cols=34 Identities=12% Similarity=0.082 Sum_probs=31.0
Q ss_pred CCCceEEEEcCCCCCCChHHHHhhhcCCCceeee
Q psy11608 52 SLATTCVWVDGVAGKCGTGEHNRVNLGYGKSLAT 85 (99)
Q Consensus 52 ~~~~~~lfVg~l~~~~s~~~L~~~F~~fG~i~~~ 85 (99)
..|+++|||+|||.++++++|+++|++||+|.++
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v 45 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKFGTICYV 45 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEE
Confidence 4567899999999999999999999999999764
No 275
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.85 E-value=2.8e-09 Score=69.87 Aligned_cols=40 Identities=13% Similarity=0.193 Sum_probs=33.9
Q ss_pred CCCCceEEEEcCCCCCCChHHHHhhhcCCCceeeeeEEEEc
Q psy11608 51 KSLATTCVWVDGVAGKCGTGEHNRVNLGYGKSLATTCVWVD 91 (99)
Q Consensus 51 k~~~~~~lfVg~l~~~~s~~~L~~~F~~fG~i~~~~~v~~d 91 (99)
...|+++|||+|||+++++++|+++|++||+|.++ .+..|
T Consensus 27 ~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v-~i~~~ 66 (119)
T 2ad9_A 27 AGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNL-LMLKG 66 (119)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEE-EEEGG
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEE-EEeCC
Confidence 34568899999999999999999999999999876 34344
No 276
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=98.85 E-value=3e-09 Score=67.90 Aligned_cols=35 Identities=14% Similarity=0.137 Sum_probs=31.7
Q ss_pred CCCCceEEEEcCCCCCCChHHHHhhhcCCCceeee
Q psy11608 51 KSLATTCVWVDGVAGKCGTGEHNRVNLGYGKSLAT 85 (99)
Q Consensus 51 k~~~~~~lfVg~l~~~~s~~~L~~~F~~fG~i~~~ 85 (99)
...|++.|||+|||+++++++|+++|++||+|.++
T Consensus 17 ~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v 51 (100)
T 3r27_A 17 KTPASPVVHIRGLIDGVVEADLVEALQEFGPISYV 51 (100)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEE
T ss_pred cCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEE
Confidence 34678999999999999999999999999999764
No 277
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=98.84 E-value=2.1e-09 Score=70.25 Aligned_cols=43 Identities=9% Similarity=0.047 Sum_probs=37.7
Q ss_pred CceEEEEcCCCCCCChHHHHhhhcCCCceeeeeEEEEcCCCCCC
Q psy11608 54 ATTCVWVDGVAGKCGTGEHNRVNLGYGKSLATTCVWVDGVAGKC 97 (99)
Q Consensus 54 ~~~~lfVg~l~~~~s~~~L~~~F~~fG~i~~~~~v~~d~~~g~~ 97 (99)
+.++|||+|||.++++++|+++|+.||+|.++ .+..|+.+|++
T Consensus 41 ~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v-~i~~~~~~~~~ 83 (139)
T 1u6f_A 41 VLRNLMVNYIPTTVDEVQLRQLFERYGPIESV-KIVCDRETRQS 83 (139)
T ss_dssp TTSEEEEESCSTTCCHHHHHHHHHHHSCEEEE-EEEEETTTTEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEE-EEEEcCCCCCc
Confidence 46899999999999999999999999999876 56688887754
No 278
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=98.84 E-value=3.5e-09 Score=70.54 Aligned_cols=81 Identities=9% Similarity=-0.011 Sum_probs=36.8
Q ss_pred CCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEE--Eee-cCCCCceEEEEcCCCCCCChHHHHhhhcCCCc---eeeeeEE
Q psy11608 15 SAFAFVQYTDIASVVRAMRAMDGEYVGHNRVN--LGY-GKSLATTCVWVDGVAGKCGTGEHNRVNLGYGK---SLATTCV 88 (99)
Q Consensus 15 ~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~--v~~-~k~~~~~~lfVg~l~~~~s~~~L~~~F~~fG~---i~~~~~v 88 (99)
+|++|-+|.-++.+-.....+-..+=++..=+ ... ....+..+|||+|||.++++++|+++|++||. |..+ .+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~g~g~~~~~~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v-~i 79 (136)
T 2hgl_A 1 MGSSHHHHHHSSGLVPRGSHMASMTGGQQMGRGSMMLGPEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGV-HF 79 (136)
T ss_dssp ----------------------------------CCSCSSCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTE-EE
T ss_pred CccccccccchHHHHhhccCCCcccCCCCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEE-EE
Confidence 36788888888888777766554432221100 000 11234678999999999999999999999999 6665 56
Q ss_pred EEcCCCCCC
Q psy11608 89 WVDGVAGKC 97 (99)
Q Consensus 89 ~~d~~~g~~ 97 (99)
..|+. |++
T Consensus 80 ~~d~~-g~s 87 (136)
T 2hgl_A 80 IYTRE-GRQ 87 (136)
T ss_dssp EECSS-SCE
T ss_pred EECCC-CCC
Confidence 68886 654
No 279
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.83 E-value=1.8e-09 Score=68.88 Aligned_cols=40 Identities=13% Similarity=0.054 Sum_probs=34.1
Q ss_pred CCceEEEEcCCCCCCChHHHHhhhcCCCceeeeeEEEEcCCC
Q psy11608 53 LATTCVWVDGVAGKCGTGEHNRVNLGYGKSLATTCVWVDGVA 94 (99)
Q Consensus 53 ~~~~~lfVg~l~~~~s~~~L~~~F~~fG~i~~~~~v~~d~~~ 94 (99)
.++++|||||||.++++++|+++|++||+|. ..++.|+.+
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~--~~~~~~~~~ 45 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV--VDWPHKAES 45 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC--EECTTSSSS
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE--EEEeecCCC
Confidence 3468899999999999999999999999996 355567766
No 280
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.83 E-value=9.4e-10 Score=71.05 Aligned_cols=39 Identities=18% Similarity=0.265 Sum_probs=36.5
Q ss_pred CCCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecC
Q psy11608 12 SSASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGK 51 (99)
Q Consensus 12 ~~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k 51 (99)
++++|||||+|.+.++|++|++ |||..+++++|+|.++.
T Consensus 64 g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a~ 102 (124)
T 1wel_A 64 GKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPIT 102 (124)
T ss_dssp SSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEEEC
T ss_pred CCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEECC
Confidence 4789999999999999999999 99999999999998864
No 281
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=98.83 E-value=6.3e-09 Score=70.26 Aligned_cols=51 Identities=20% Similarity=0.231 Sum_probs=44.7
Q ss_pred ceEEEEEeeCC---CCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecCCC
Q psy11608 2 VMYFVDIKKQS---SASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKSL 53 (99)
Q Consensus 2 ~I~~v~ik~~~---~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k~~ 53 (99)
.|++|.|.++. .++|||||+|.+.++|++|++. +|..++|++|+|.++.+.
T Consensus 130 ~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a~~k 183 (196)
T 1l3k_A 130 KIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKALSK 183 (196)
T ss_dssp CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEECC--
T ss_pred CeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEecCCh
Confidence 58899999874 6899999999999999999987 799999999999998654
No 282
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=98.83 E-value=2.9e-09 Score=71.51 Aligned_cols=41 Identities=10% Similarity=-0.111 Sum_probs=37.6
Q ss_pred eEEEEcCC----CCCCChHHHHhhhcCCCceeeeeEEEEcCCCCCC
Q psy11608 56 TCVWVDGV----AGKCGTGEHNRVNLGYGKSLATTCVWVDGVAGKC 97 (99)
Q Consensus 56 ~~lfVg~l----~~~~s~~~L~~~F~~fG~i~~~~~v~~d~~~g~~ 97 (99)
++|||||| |+++++++|+.+|++||+|.++ .+..|+.||..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~-~li~Dp~Tg~s 47 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHF-EAFNDPNSALP 47 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEE-EEEECTTTCCE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEE-EEEecCCCCce
Confidence 68999999 9999999999999999999886 55599999875
No 283
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.83 E-value=5.9e-09 Score=65.84 Aligned_cols=42 Identities=21% Similarity=0.151 Sum_probs=35.9
Q ss_pred CCceEEEEcCCCCCCChHHHHhhhcCCCceeeeeEEEEcCCCCC
Q psy11608 53 LATTCVWVDGVAGKCGTGEHNRVNLGYGKSLATTCVWVDGVAGK 96 (99)
Q Consensus 53 ~~~~~lfVg~l~~~~s~~~L~~~F~~fG~i~~~~~v~~d~~~g~ 96 (99)
.++++|||+|||.++++++|+++|++||+|..+ .+..|+ +|+
T Consensus 13 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~-~i~~~~-~g~ 54 (114)
T 2do0_A 13 RLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRA-DILEDK-DGK 54 (114)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEE-EEEECT-TCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEE-EEEECC-CCC
Confidence 457899999999999999999999999999876 555776 454
No 284
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=98.83 E-value=5e-09 Score=67.40 Aligned_cols=43 Identities=12% Similarity=0.110 Sum_probs=36.5
Q ss_pred CCceEEEEcCCCCCCChHHHHhhhcCCCceeeeeEEEEcCCCCCC
Q psy11608 53 LATTCVWVDGVAGKCGTGEHNRVNLGYGKSLATTCVWVDGVAGKC 97 (99)
Q Consensus 53 ~~~~~lfVg~l~~~~s~~~L~~~F~~fG~i~~~~~v~~d~~~g~~ 97 (99)
.++++|||+|||.++++++|+++|++||+|..+ .+..|+ +|++
T Consensus 33 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v-~i~~~~-~g~~ 75 (124)
T 2kt5_A 33 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKA-AVDYDR-SGRS 75 (124)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEE-EEECCS-SSSC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEE-EEEECC-CCCE
Confidence 356899999999999999999999999999876 555777 6654
No 285
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=98.82 E-value=4.4e-09 Score=70.12 Aligned_cols=44 Identities=7% Similarity=-0.014 Sum_probs=38.3
Q ss_pred CCceEEEEcCCCCCCChHHHHhhhcCCCceeeeeEEEEcCCCCCC
Q psy11608 53 LATTCVWVDGVAGKCGTGEHNRVNLGYGKSLATTCVWVDGVAGKC 97 (99)
Q Consensus 53 ~~~~~lfVg~l~~~~s~~~L~~~F~~fG~i~~~~~v~~d~~~g~~ 97 (99)
.+.++|||+|||.++++++|+++|++||+|..+ .+..|+.+|++
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v-~i~~~~~~~~~ 80 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKI-IMGLDKMKKTA 80 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEE-EEEECTTTCCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEE-EEEecCCCCcc
Confidence 356899999999999999999999999999876 56688887764
No 286
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.82 E-value=3.3e-09 Score=66.04 Aligned_cols=41 Identities=5% Similarity=-0.039 Sum_probs=34.9
Q ss_pred CCceEEEEcCCCCCCChHHHHhhhcCCCceeeeeEEEEcCCC
Q psy11608 53 LATTCVWVDGVAGKCGTGEHNRVNLGYGKSLATTCVWVDGVA 94 (99)
Q Consensus 53 ~~~~~lfVg~l~~~~s~~~L~~~F~~fG~i~~~~~v~~d~~~ 94 (99)
.+.++|||+|||+++++++|+++|++||+|..+ .+..|+.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v-~i~~~~~~ 53 (103)
T 2cqi_A 13 GQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSC-KMITEHTS 53 (103)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEE-EEECCCCS
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEE-EEEecCCC
Confidence 356899999999999999999999999999875 55567554
No 287
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.82 E-value=8.6e-09 Score=63.33 Aligned_cols=49 Identities=14% Similarity=0.218 Sum_probs=39.8
Q ss_pred ceEEEEEeeCCCCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecCCC
Q psy11608 2 VMYFVDIKKQSSASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKSL 53 (99)
Q Consensus 2 ~I~~v~ik~~~~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k~~ 53 (99)
.|.+| +......+ ||||+|.+.++|++|++ |||..+++++|+|.++.+.
T Consensus 34 ~v~~v-~~~~~~g~-~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~~~ 82 (94)
T 2e5g_A 34 PVASV-VMDKDKGV-FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPREQK 82 (94)
T ss_dssp CEEEE-EECSSSCC-EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSCCS
T ss_pred CeEEE-EEcCCCCc-EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECCcC
Confidence 46776 33333344 99999999999999999 9999999999999987643
No 288
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.82 E-value=4.6e-09 Score=65.95 Aligned_cols=43 Identities=19% Similarity=0.176 Sum_probs=35.4
Q ss_pred CceEEEEcCCCCCCChHHHHhhhcCCCceeeeeEEEEcCCCCCC
Q psy11608 54 ATTCVWVDGVAGKCGTGEHNRVNLGYGKSLATTCVWVDGVAGKC 97 (99)
Q Consensus 54 ~~~~lfVg~l~~~~s~~~L~~~F~~fG~i~~~~~v~~d~~~g~~ 97 (99)
+..+|||+|||.++++++|+++|++||.|.+...+..| .+|++
T Consensus 14 ~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~ 56 (104)
T 1wg5_A 14 NDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRS 56 (104)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCB
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCc
Confidence 46789999999999999999999999999753345567 56654
No 289
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.82 E-value=7.8e-09 Score=64.29 Aligned_cols=40 Identities=10% Similarity=0.082 Sum_probs=34.1
Q ss_pred CCceEEEEcCCCCCCChHHHHhhhcCCCceeeeeEEEEcCC
Q psy11608 53 LATTCVWVDGVAGKCGTGEHNRVNLGYGKSLATTCVWVDGV 93 (99)
Q Consensus 53 ~~~~~lfVg~l~~~~s~~~L~~~F~~fG~i~~~~~v~~d~~ 93 (99)
.+.++|||+|||.++++++|+++|++||+|..+ .+..|+.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v-~i~~~~~ 52 (103)
T 2cq3_A 13 STPKRLHVSNIPFRFRDPDLRQMFGQFGKILDV-EIIFNER 52 (103)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEE-EEECCTT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEE-EEEecCC
Confidence 456899999999999999999999999999775 4546654
No 290
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=98.82 E-value=9.5e-09 Score=73.55 Aligned_cols=48 Identities=19% Similarity=0.270 Sum_probs=43.0
Q ss_pred ceEEEEEeeCCCCCCeEEEEeCCHHHHHHHHHhhCCeEeC-CeEEEEeecC
Q psy11608 2 VMYFVDIKKQSSASAFAFVQYTDIASVVRAMRAMDGEYVG-HNRVNLGYGK 51 (99)
Q Consensus 2 ~I~~v~ik~~~~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~-~~~i~v~~~k 51 (99)
.|.+|.|.++. +|||||+|.+.++|++|++.|||..++ +++|+|.|++
T Consensus 233 ~i~~v~~~~~~--~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 233 GFKEVRLVPGR--HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred CeEEEEEecCC--CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 47788887543 699999999999999999999999999 9999999986
No 291
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=98.81 E-value=3.4e-09 Score=63.53 Aligned_cols=40 Identities=18% Similarity=0.184 Sum_probs=31.9
Q ss_pred ceEEEEcCCCCCC------ChHHHHhhhcCCCceeeeeEEEEcCCCCCC
Q psy11608 55 TTCVWVDGVAGKC------GTGEHNRVNLGYGKSLATTCVWVDGVAGKC 97 (99)
Q Consensus 55 ~~~lfVg~l~~~~------s~~~L~~~F~~fG~i~~~~~v~~d~~~g~~ 97 (99)
+++|||+|||.++ ++++|+++|++||+|.++ .+.+.+|++
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v---~i~~~~g~~ 46 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITND---FYPEEDGKT 46 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEE---ECCCBTTBC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEE---EecCCCCcE
Confidence 3689999999999 679999999999999654 233556654
No 292
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=98.80 E-value=2.4e-09 Score=70.65 Aligned_cols=46 Identities=17% Similarity=0.247 Sum_probs=40.0
Q ss_pred EEEEeeCC--CCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecC
Q psy11608 5 FVDIKKQS--SASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGK 51 (99)
Q Consensus 5 ~v~ik~~~--~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k 51 (99)
+|.|.+|. +++|||||+|.+.++|++|++. ++..++++.|+|..+.
T Consensus 72 ~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~gR~I~V~~a~ 119 (126)
T 2hgm_A 72 GITLPVDPEGKITGEAFVQFASQELAEKALGK-HKERIGHRYIEVFKSS 119 (126)
T ss_dssp EEECCCCSSSSSCSEEEEEESSTTHHHHHHTT-TTCCBTTBCCCCEEEC
T ss_pred EEEEEECCCCCCceEEEEEECCHHHHHHHHHH-CCCEECCEEEEEEECC
Confidence 78887764 7999999999999999999985 7799999999887653
No 293
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.80 E-value=4.9e-09 Score=67.65 Aligned_cols=43 Identities=16% Similarity=0.179 Sum_probs=36.4
Q ss_pred CceEEEEcCCCCCCChHHHHhhhcCCCceeeeeEEEEcCCCCCC
Q psy11608 54 ATTCVWVDGVAGKCGTGEHNRVNLGYGKSLATTCVWVDGVAGKC 97 (99)
Q Consensus 54 ~~~~lfVg~l~~~~s~~~L~~~F~~fG~i~~~~~v~~d~~~g~~ 97 (99)
+..+|||+|||.++++++|+++|++||.|..+..+ .|..+|++
T Consensus 24 ~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~-~~~~~g~~ 66 (124)
T 1wel_A 24 AGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYI-AYGPNGKA 66 (124)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEE-EECTTSSE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEE-EECCCCCC
Confidence 45789999999999999999999999999765444 77777764
No 294
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=98.79 E-value=5.2e-09 Score=74.66 Aligned_cols=43 Identities=7% Similarity=0.129 Sum_probs=37.0
Q ss_pred CceEEEEcCCCCCCChHHHHhhhcCCC--ceeeeeEEEEcCCCCCC
Q psy11608 54 ATTCVWVDGVAGKCGTGEHNRVNLGYG--KSLATTCVWVDGVAGKC 97 (99)
Q Consensus 54 ~~~~lfVg~l~~~~s~~~L~~~F~~fG--~i~~~~~v~~d~~~g~~ 97 (99)
..++|||+|||.++++++|+++|++|| +|.++ .++.|+.+|++
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v-~i~~d~~tg~s 111 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEI-KFFENRANGQS 111 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEE-EEEECTTTCCE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEE-EEEecCCCCcc
Confidence 356899999999999999999999999 99876 56689988874
No 295
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=98.79 E-value=9.9e-10 Score=73.50 Aligned_cols=50 Identities=20% Similarity=0.165 Sum_probs=43.0
Q ss_pred eEEEEEeeCC--CCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecCCC
Q psy11608 3 MYFVDIKKQS--SASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKSL 53 (99)
Q Consensus 3 I~~v~ik~~~--~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k~~ 53 (99)
|.+|.|.++. +++|||||+|.+.++|++|+ ++||..++++.|+|..+...
T Consensus 72 i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a~~~ 123 (139)
T 2hgn_A 72 PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLNSTT 123 (139)
T ss_dssp CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEECCCS
T ss_pred CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEECCCC
Confidence 3477777664 79999999999999999999 89999999999998876544
No 296
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.79 E-value=8.5e-09 Score=62.77 Aligned_cols=34 Identities=18% Similarity=0.230 Sum_probs=30.7
Q ss_pred CCCceEEEEcCCCCCCChHHHHhhhcCCCceeee
Q psy11608 52 SLATTCVWVDGVAGKCGTGEHNRVNLGYGKSLAT 85 (99)
Q Consensus 52 ~~~~~~lfVg~l~~~~s~~~L~~~F~~fG~i~~~ 85 (99)
+.+.++|||+|||.++++++|+++|++||+|.++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v 38 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLEC 38 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEE
Confidence 3467899999999999999999999999999765
No 297
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=98.78 E-value=3.8e-09 Score=65.61 Aligned_cols=49 Identities=14% Similarity=0.210 Sum_probs=43.1
Q ss_pred ceEEEEEeeCC--CCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecCC
Q psy11608 2 VMYFVDIKKQS--SASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKS 52 (99)
Q Consensus 2 ~I~~v~ik~~~--~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k~ 52 (99)
.|.+|.|.++. +++|||||+|.+.++|++|++ +|..+.|+++.|.++.+
T Consensus 35 ~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~~ 85 (102)
T 2xs2_A 35 SVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPAIR 85 (102)
T ss_dssp CEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEEEE
T ss_pred CeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEECCc
Confidence 58889998875 688999999999999999999 88999999998887643
No 298
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.77 E-value=7.2e-09 Score=63.35 Aligned_cols=34 Identities=21% Similarity=0.271 Sum_probs=30.7
Q ss_pred CCCceEEEEcCCCCCCChHHHHhhhcCCCceeee
Q psy11608 52 SLATTCVWVDGVAGKCGTGEHNRVNLGYGKSLAT 85 (99)
Q Consensus 52 ~~~~~~lfVg~l~~~~s~~~L~~~F~~fG~i~~~ 85 (99)
+.+.++|||+|||.++++++|+++|++||+|..+
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v 40 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIEC 40 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEE
Confidence 3467899999999999999999999999999654
No 299
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.77 E-value=7.3e-09 Score=65.14 Aligned_cols=33 Identities=15% Similarity=0.152 Sum_probs=30.1
Q ss_pred CCceEEEEcCCCCCCChHHHHhhhcCCCceeee
Q psy11608 53 LATTCVWVDGVAGKCGTGEHNRVNLGYGKSLAT 85 (99)
Q Consensus 53 ~~~~~lfVg~l~~~~s~~~L~~~F~~fG~i~~~ 85 (99)
.+.++|||+|||.++++++|+++|++||+|..+
T Consensus 20 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~ 52 (109)
T 1x4a_A 20 NNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDI 52 (109)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEE
Confidence 456899999999999999999999999999764
No 300
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=98.76 E-value=1.9e-08 Score=61.80 Aligned_cols=47 Identities=26% Similarity=0.235 Sum_probs=36.7
Q ss_pred ceEEEEEeeCCCCCCeEEEEeCCHHHHHHHHHhhCCeE--eCCeEEEEeecCCCC
Q psy11608 2 VMYFVDIKKQSSASAFAFVQYTDIASVVRAMRAMDGEY--VGHNRVNLGYGKSLA 54 (99)
Q Consensus 2 ~I~~v~ik~~~~s~gfaFV~F~~~~~a~~Ai~~m~G~~--i~~~~i~v~~~k~~~ 54 (99)
.|.+|.|.++ |||||||+|.+.++|++ |+|.. +.+++|+|.++++.+
T Consensus 37 ~i~~v~i~~~--srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~~a~~k~ 85 (89)
T 3d2w_A 37 EVVDVFIPKP--FRAFAFVTFADDKVAQS----LCGEDLIIKGISVHISNAEPKH 85 (89)
T ss_dssp CEEEEECCSS--CCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEEECC---
T ss_pred CEEEEEEeeC--CCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEEEcCCCC
Confidence 5888888875 89999999999999983 56654 458999999987653
No 301
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.76 E-value=8.2e-09 Score=66.94 Aligned_cols=34 Identities=9% Similarity=0.074 Sum_probs=31.2
Q ss_pred CCCceEEEEcCCCCC-CChHHHHhhhcCCCceeee
Q psy11608 52 SLATTCVWVDGVAGK-CGTGEHNRVNLGYGKSLAT 85 (99)
Q Consensus 52 ~~~~~~lfVg~l~~~-~s~~~L~~~F~~fG~i~~~ 85 (99)
..|+++|||+|||.+ +++++|+++|++||+|.++
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v 56 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNY 56 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEE
Confidence 557899999999998 9999999999999999765
No 302
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=98.76 E-value=1.1e-08 Score=62.18 Aligned_cols=34 Identities=9% Similarity=-0.063 Sum_probs=30.9
Q ss_pred CCceEEEEcCCCCCCChHHHHhhhcCCCceeeee
Q psy11608 53 LATTCVWVDGVAGKCGTGEHNRVNLGYGKSLATT 86 (99)
Q Consensus 53 ~~~~~lfVg~l~~~~s~~~L~~~F~~fG~i~~~~ 86 (99)
.+.++|||+|||.++++++|+++|++||+|..+.
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~ 39 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYAD 39 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEE
Confidence 4578999999999999999999999999997653
No 303
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=98.76 E-value=4.1e-09 Score=65.66 Aligned_cols=42 Identities=5% Similarity=-0.058 Sum_probs=33.7
Q ss_pred CceEEEEcCCCCCCChHHHHhhhcCCCceeeeeEEEEcC-CCCCC
Q psy11608 54 ATTCVWVDGVAGKCGTGEHNRVNLGYGKSLATTCVWVDG-VAGKC 97 (99)
Q Consensus 54 ~~~~lfVg~l~~~~s~~~L~~~F~~fG~i~~~~~v~~d~-~~g~~ 97 (99)
+.++|||+|||.++++++|+++|++|| |.++ .+..|+ .+|++
T Consensus 18 ~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v-~i~~~~~~~g~~ 60 (100)
T 2j76_E 18 PPYTAFLGNLPYDVTEESIKEFFRGLN-ISAV-RLPREPSNPERL 60 (100)
T ss_dssp --CEEEESCCSSCCSSSHHHHHSCSSC-EEEE-ECSCCTTTTCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEE-EEEecCCcCCcc
Confidence 468999999999999999999999999 8765 554676 46654
No 304
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=98.76 E-value=5e-09 Score=71.36 Aligned_cols=49 Identities=16% Similarity=0.326 Sum_probs=43.3
Q ss_pred ceEEEEEeeCCCCCCeEEEEeCCHHHHHHHHHhhCCeEeC-CeEEEEeecCC
Q psy11608 2 VMYFVDIKKQSSASAFAFVQYTDIASVVRAMRAMDGEYVG-HNRVNLGYGKS 52 (99)
Q Consensus 2 ~I~~v~ik~~~~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~-~~~i~v~~~k~ 52 (99)
.|.+|.|..+ ++|||||+|.+.++|++|++.|||..++ +++|+|.|+++
T Consensus 147 ~v~~v~i~~~--~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~ 196 (198)
T 1qm9_A 147 VVKGFKFFQK--DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKS 196 (198)
T ss_dssp CCCEEEESST--TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECC
T ss_pred CceEEEEEeC--CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeecc
Confidence 4677777543 4899999999999999999999999999 99999999875
No 305
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=98.76 E-value=3.4e-08 Score=68.70 Aligned_cols=69 Identities=13% Similarity=0.161 Sum_probs=51.0
Q ss_pred CHHHHHHHHHhh--CCeEeCCeEEEEeec--CCCC-----------ceEEEEcCCCCCCChHHHHhhhcCCCceeeeeEE
Q psy11608 24 DIASVVRAMRAM--DGEYVGHNRVNLGYG--KSLA-----------TTCVWVDGVAGKCGTGEHNRVNLGYGKSLATTCV 88 (99)
Q Consensus 24 ~~~~a~~Ai~~m--~G~~i~~~~i~v~~~--k~~~-----------~~~lfVg~l~~~~s~~~L~~~F~~fG~i~~~~~v 88 (99)
|.+....|++.. ....+.....++... ++.| .++|||+|||.++++++|+++|++||+|..+ .+
T Consensus 63 d~~~I~~Al~~S~~~~lev~ed~~~vrR~~~~p~p~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v-~i 141 (193)
T 2voo_A 63 DFNVIVEALSKSKAELMEISEDKTKIRRSPSKPLPEVTDEYKNDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNI-QM 141 (193)
T ss_dssp CHHHHHHHHHTCSSCCEEECTTSSEEEECTTSCCCCCCHHHHHHHHHTEEEEECCCTTCCHHHHHHHHTTSCCEEEE-EE
T ss_pred CHHHHHHHHhhcccceEEEecccceEEecccCCCcccchhhhhccccCEEEecCCCCcCCHHHHHHHHhcCCCEEEE-EE
Confidence 677788888887 666665543344433 2222 3689999999999999999999999999876 55
Q ss_pred EEcCC
Q psy11608 89 WVDGV 93 (99)
Q Consensus 89 ~~d~~ 93 (99)
..|..
T Consensus 142 ~~~~~ 146 (193)
T 2voo_A 142 RRTLH 146 (193)
T ss_dssp EECTT
T ss_pred EECCC
Confidence 56653
No 306
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.76 E-value=9.6e-09 Score=61.62 Aligned_cols=33 Identities=12% Similarity=0.196 Sum_probs=30.0
Q ss_pred CCceEEEEcCCCCCCChHHHHhhhcCCCceeee
Q psy11608 53 LATTCVWVDGVAGKCGTGEHNRVNLGYGKSLAT 85 (99)
Q Consensus 53 ~~~~~lfVg~l~~~~s~~~L~~~F~~fG~i~~~ 85 (99)
.+.++|||+|||+++++++|+++|++||+|..+
T Consensus 10 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~ 42 (85)
T 2ytc_A 10 KTITTLYVGGLGDTITETDLRNHFYQFGEIRTI 42 (85)
T ss_dssp SSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEE
T ss_pred CCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEE
Confidence 356789999999999999999999999999765
No 307
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.75 E-value=5.6e-09 Score=64.61 Aligned_cols=40 Identities=13% Similarity=-0.071 Sum_probs=34.4
Q ss_pred CceEEEEcCCCCCCChHHHH----hhhcCCCceeeeeEEEEcCCC
Q psy11608 54 ATTCVWVDGVAGKCGTGEHN----RVNLGYGKSLATTCVWVDGVA 94 (99)
Q Consensus 54 ~~~~lfVg~l~~~~s~~~L~----~~F~~fG~i~~~~~v~~d~~~ 94 (99)
..++|||+|||.++++++|+ ++|++||+|.++ .+..|+.+
T Consensus 8 ~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v-~i~~~~~~ 51 (96)
T 2dgx_A 8 NGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSV-ELSPHTDY 51 (96)
T ss_dssp SCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEE-EECSCCST
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEE-EEEeCCCC
Confidence 45789999999999999999 999999999875 55567665
No 308
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.75 E-value=2.3e-09 Score=70.32 Aligned_cols=47 Identities=15% Similarity=0.101 Sum_probs=40.6
Q ss_pred eEEEEEeeC--CCCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeec
Q psy11608 3 MYFVDIKKQ--SSASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYG 50 (99)
Q Consensus 3 I~~v~ik~~--~~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~ 50 (99)
|.+|.|.++ ++++|||||+|.+.++|++|++. ||..++++.|+|..+
T Consensus 54 v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~V~~a 102 (123)
T 2dha_A 54 KEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIELFRS 102 (123)
T ss_dssp GGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEECCEEE
T ss_pred cceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEEEC
Confidence 457777765 47899999999999999999996 999999999988654
No 309
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.74 E-value=1.6e-08 Score=61.96 Aligned_cols=51 Identities=16% Similarity=0.224 Sum_probs=43.0
Q ss_pred ceEEE-EEeeCCCCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecCCC
Q psy11608 2 VMYFV-DIKKQSSASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKSL 53 (99)
Q Consensus 2 ~I~~v-~ik~~~~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k~~ 53 (99)
+|.+| .|.++.. .|.|||+|.+.++|++|++.|||..+++++|+|.++++.
T Consensus 41 ~v~~~~~i~~~~~-~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 92 (96)
T 2e44_A 41 VVESCEQVNTDSE-TAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPDE 92 (96)
T ss_dssp CEEEEEEECCSSS-SEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCCC
T ss_pred CeEEEEEeecCCC-CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCcc
Confidence 57788 4666643 344999999999999999999999999999999998754
No 310
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.74 E-value=1.1e-08 Score=64.70 Aligned_cols=40 Identities=10% Similarity=0.076 Sum_probs=34.0
Q ss_pred CCceEEEEcCCCCCCChHHHHhhhcCCCceeeeeEEEEcCC
Q psy11608 53 LATTCVWVDGVAGKCGTGEHNRVNLGYGKSLATTCVWVDGV 93 (99)
Q Consensus 53 ~~~~~lfVg~l~~~~s~~~L~~~F~~fG~i~~~~~v~~d~~ 93 (99)
.+.++|||+|||.++++++|+++|++||+|..+ .+..|+.
T Consensus 27 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v-~i~~~~~ 66 (109)
T 2err_A 27 SQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDV-EIIFNER 66 (109)
T ss_dssp TCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCE-EECCBTT
T ss_pred CCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEE-EEEECCC
Confidence 356899999999999999999999999999775 4546653
No 311
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=98.74 E-value=1.7e-08 Score=70.96 Aligned_cols=49 Identities=16% Similarity=0.316 Sum_probs=43.6
Q ss_pred ceEEEEEeeCCCCCCeEEEEeCCHHHHHHHHHhhCCeEeC-CeEEEEeecCC
Q psy11608 2 VMYFVDIKKQSSASAFAFVQYTDIASVVRAMRAMDGEYVG-HNRVNLGYGKS 52 (99)
Q Consensus 2 ~I~~v~ik~~~~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~-~~~i~v~~~k~ 52 (99)
.|.+|.|.. .++|||||+|.+.++|++|++.|||..++ +++|+|.|+++
T Consensus 178 ~i~~v~i~~--~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~ 227 (229)
T 2adc_A 178 VVKGFKFFQ--KDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKS 227 (229)
T ss_dssp CEEEEEECS--SSTTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSS
T ss_pred CeeEEEEEE--CCCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecC
Confidence 577777754 35899999999999999999999999999 99999999875
No 312
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=98.73 E-value=1.2e-08 Score=62.99 Aligned_cols=34 Identities=9% Similarity=0.166 Sum_probs=29.8
Q ss_pred CCCceEEEEcCCCC-CCChHHHHhhhcCCCceeee
Q psy11608 52 SLATTCVWVDGVAG-KCGTGEHNRVNLGYGKSLAT 85 (99)
Q Consensus 52 ~~~~~~lfVg~l~~-~~s~~~L~~~F~~fG~i~~~ 85 (99)
..++++|||+|||+ ++++++|+++|++||+|.++
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v 41 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQI 41 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEE
Confidence 45678999999998 99999999999999999754
No 313
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.72 E-value=5.7e-09 Score=63.56 Aligned_cols=35 Identities=20% Similarity=0.244 Sum_probs=31.1
Q ss_pred CCCCceEEEEcCCCCCCChHHHHhhhcCCCceeee
Q psy11608 51 KSLATTCVWVDGVAGKCGTGEHNRVNLGYGKSLAT 85 (99)
Q Consensus 51 k~~~~~~lfVg~l~~~~s~~~L~~~F~~fG~i~~~ 85 (99)
++.+.++|||+|||.++++++|+++|++||+|..+
T Consensus 5 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~ 39 (90)
T 2dnp_A 5 SSGNTWKIFVGNVSAACTSQELRSLFERRGRVIEC 39 (90)
T ss_dssp SSCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEE
Confidence 34567899999999999999999999999999654
No 314
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.71 E-value=3.6e-08 Score=62.73 Aligned_cols=48 Identities=13% Similarity=0.054 Sum_probs=38.2
Q ss_pred CCCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecCCCCceEEEEc
Q psy11608 12 SSASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKSLATTCVWVD 61 (99)
Q Consensus 12 ~~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k~~~~~~lfVg 61 (99)
++++|||||+|.+.++|++|++.|+ .+.|+.+.+........+.+.|.
T Consensus 49 g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~~~~~~~~~~~~~v~ 96 (114)
T 2dnl_A 49 FPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLCVSSPTIKDKPVQIR 96 (114)
T ss_dssp SCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEEECCSSSCSEEEEEE
T ss_pred CCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEeccCCCcCCCeeecc
Confidence 3789999999999999999999984 35666777766666666777775
No 315
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.71 E-value=1.8e-08 Score=62.31 Aligned_cols=33 Identities=15% Similarity=0.196 Sum_probs=30.0
Q ss_pred CCceEEEEcCCCCCCChHHHHhhhcCCCceeee
Q psy11608 53 LATTCVWVDGVAGKCGTGEHNRVNLGYGKSLAT 85 (99)
Q Consensus 53 ~~~~~lfVg~l~~~~s~~~L~~~F~~fG~i~~~ 85 (99)
.+.++|||+|||+++++++|+++|++||+|..+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v 45 (99)
T 2cpj_A 13 TQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEV 45 (99)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEE
Confidence 456799999999999999999999999999765
No 316
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.70 E-value=1.6e-08 Score=63.73 Aligned_cols=37 Identities=16% Similarity=0.066 Sum_probs=31.5
Q ss_pred CceEEEEcCCCCCCChHHHHhhhcCCCceeeeeEEEEc
Q psy11608 54 ATTCVWVDGVAGKCGTGEHNRVNLGYGKSLATTCVWVD 91 (99)
Q Consensus 54 ~~~~lfVg~l~~~~s~~~L~~~F~~fG~i~~~~~v~~d 91 (99)
+..+|||+|||.++++++|+++|++||+|..+ .+..|
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~-~i~~~ 50 (108)
T 1x4c_A 14 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYA-DVYRD 50 (108)
T ss_dssp CCCEEEEESCCSSCCHHHHHHHHGGGSCEEEE-EEETT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEE-EEecC
Confidence 46899999999999999999999999999765 34343
No 317
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=98.69 E-value=1e-09 Score=68.13 Aligned_cols=42 Identities=10% Similarity=-0.038 Sum_probs=34.9
Q ss_pred CceEEEEcCCCCCCChHHHHhhhcCCCceeeeeEEEEcCCCCCC
Q psy11608 54 ATTCVWVDGVAGKCGTGEHNRVNLGYGKSLATTCVWVDGVAGKC 97 (99)
Q Consensus 54 ~~~~lfVg~l~~~~s~~~L~~~F~~fG~i~~~~~v~~d~~~g~~ 97 (99)
+..+|||+|||.++++++|+++|++||.|.. .+++|+.+|++
T Consensus 16 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~--~~~~~~~~g~~ 57 (101)
T 1fj7_A 16 TPFNLFIGNLNPNKSVAELKVAISELFAKND--LAVVDVRTGTN 57 (101)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHHHHHT--CCCCEEEEETT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcce--EEEecCCCCCc
Confidence 5689999999999999999999999999965 44466665543
No 318
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=98.69 E-value=3.1e-08 Score=68.86 Aligned_cols=50 Identities=8% Similarity=0.153 Sum_probs=43.5
Q ss_pred ceEEEEEeeCC--CCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecCC
Q psy11608 2 VMYFVDIKKQS--SASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKS 52 (99)
Q Consensus 2 ~I~~v~ik~~~--~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k~ 52 (99)
+|.+|.|.++. +++|||||+|.+.++|++|++.++ ..+.|++|+|.+++.
T Consensus 135 ~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~-~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 135 QVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPG-QKYKETDLLILFKDD 186 (193)
T ss_dssp CEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTT-CEETTEECEEEETTT
T ss_pred CEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCC-CeECCEEEEEEEhHH
Confidence 58899998874 689999999999999999998765 589999999988653
No 319
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=98.15 E-value=1.9e-09 Score=68.64 Aligned_cols=45 Identities=13% Similarity=0.158 Sum_probs=37.1
Q ss_pred CCceEEEEcCCCCCCChHHHHhhhcCCCceeee-------eEEEEcCCCCCC
Q psy11608 53 LATTCVWVDGVAGKCGTGEHNRVNLGYGKSLAT-------TCVWVDGVAGKC 97 (99)
Q Consensus 53 ~~~~~lfVg~l~~~~s~~~L~~~F~~fG~i~~~-------~~v~~d~~~g~~ 97 (99)
.++++|||+|||.++++++|+++|++||.|... ..+..|+.+|++
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~ 56 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKL 56 (116)
Confidence 356899999999999999999999999999761 256578776654
No 320
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=98.68 E-value=1.8e-08 Score=67.66 Aligned_cols=50 Identities=12% Similarity=0.192 Sum_probs=42.1
Q ss_pred ceEEEEEeeCC---CCCCeEEEEeCC----HHH----HHHHHH--hhCCeEeCCeEEEEeecC
Q psy11608 2 VMYFVDIKKQS---SASAFAFVQYTD----IAS----VVRAMR--AMDGEYVGHNRVNLGYGK 51 (99)
Q Consensus 2 ~I~~v~ik~~~---~s~gfaFV~F~~----~~~----a~~Ai~--~m~G~~i~~~~i~v~~~k 51 (99)
.|.++.+..|+ .|+|||||+|.| +++ |.+|++ +|||..++|++|+|...+
T Consensus 32 eV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~I~Gr~irV~ln~ 94 (136)
T 2j8a_A 32 EISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCFIMGFKFEVILNK 94 (136)
T ss_dssp CCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEEETTEEEEEEECC
T ss_pred CeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCeecCcEEEEEECc
Confidence 57889999997 689999999996 433 788998 899999999999998754
No 321
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.67 E-value=1.6e-08 Score=70.77 Aligned_cols=50 Identities=16% Similarity=0.224 Sum_probs=43.6
Q ss_pred ceEEEEEeeCC-------CCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecC
Q psy11608 2 VMYFVDIKKQS-------SASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGK 51 (99)
Q Consensus 2 ~I~~v~ik~~~-------~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k 51 (99)
.|.+|.|-++. +++||+||+|.+.++|++|++.|||+++.||+|++.|..
T Consensus 155 ~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~ 211 (222)
T 3dxb_A 155 AVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 211 (222)
T ss_dssp CEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred CeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcC
Confidence 47778776542 688999999999999999999999999999999998753
No 322
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=98.66 E-value=2.6e-08 Score=61.68 Aligned_cols=32 Identities=9% Similarity=0.111 Sum_probs=29.5
Q ss_pred CceEEEEcCCCCCCChHHHHhhhcCCCceeee
Q psy11608 54 ATTCVWVDGVAGKCGTGEHNRVNLGYGKSLAT 85 (99)
Q Consensus 54 ~~~~lfVg~l~~~~s~~~L~~~F~~fG~i~~~ 85 (99)
..++|||+|||.++++++|+++|++||+|.++
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~ 57 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFGFILDF 57 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTSCCSEE
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCCCEEEE
Confidence 36789999999999999999999999999765
No 323
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.66 E-value=1.9e-08 Score=62.34 Aligned_cols=30 Identities=3% Similarity=-0.183 Sum_probs=28.3
Q ss_pred CCceEEEEcCCCCCCChHHHHhhhcCCCce
Q psy11608 53 LATTCVWVDGVAGKCGTGEHNRVNLGYGKS 82 (99)
Q Consensus 53 ~~~~~lfVg~l~~~~s~~~L~~~F~~fG~i 82 (99)
.+.++|||+|||.++++++|+++|++||.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v 42 (101)
T 2fc9_A 13 GESKTLVLSNLSYSATEETLQEVFEKATFI 42 (101)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHCSSCSEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCEE
Confidence 457899999999999999999999999998
No 324
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=98.66 E-value=3.8e-08 Score=74.63 Aligned_cols=49 Identities=14% Similarity=0.289 Sum_probs=38.5
Q ss_pred ceEEEEEeeCCCCCCeEEEEeCCHHHHHHHHHhhCCeEeC---Ce--EEEEeecCCC
Q psy11608 2 VMYFVDIKKQSSASAFAFVQYTDIASVVRAMRAMDGEYVG---HN--RVNLGYGKSL 53 (99)
Q Consensus 2 ~I~~v~ik~~~~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~---~~--~i~v~~~k~~ 53 (99)
.|.+|.+. .+||||||+|.+.++|++|+++|||..+. |+ ++.++|.+..
T Consensus 46 ~V~~v~~~---~~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ly~~~~~~~ 99 (345)
T 3tht_A 46 LVDALLMP---PNKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLNFVEKV 99 (345)
T ss_dssp CEEEEECC---TTCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEEECSSE
T ss_pred CeEEEEEe---CCCCEEEEEECCHHHHHHHHHHhCCCccccccCCceEEEEEEeecc
Confidence 35666553 37999999999999999999999999772 23 6778887543
No 325
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=98.66 E-value=2.9e-08 Score=62.99 Aligned_cols=33 Identities=18% Similarity=0.165 Sum_probs=30.3
Q ss_pred CCceEEEEcCCCCCCChHHHHhhhcCCCceeee
Q psy11608 53 LATTCVWVDGVAGKCGTGEHNRVNLGYGKSLAT 85 (99)
Q Consensus 53 ~~~~~lfVg~l~~~~s~~~L~~~F~~fG~i~~~ 85 (99)
.++++|||+|||.++++++|+++|++||+|..+
T Consensus 29 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v 61 (108)
T 2jvo_A 29 LSNTRLFVRPFPLDVQESELNEIFGPFGPMKEV 61 (108)
T ss_dssp CSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEE
Confidence 457899999999999999999999999999765
No 326
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.65 E-value=3e-08 Score=63.75 Aligned_cols=42 Identities=10% Similarity=0.042 Sum_probs=35.4
Q ss_pred CceEEEEcCCCCCCChHHHHhhhcCCCc---eeeeeEEEEcCCCCCC
Q psy11608 54 ATTCVWVDGVAGKCGTGEHNRVNLGYGK---SLATTCVWVDGVAGKC 97 (99)
Q Consensus 54 ~~~~lfVg~l~~~~s~~~L~~~F~~fG~---i~~~~~v~~d~~~g~~ 97 (99)
+..+|||+|||.++++++|+++|++||. |..+ .+..|+. |++
T Consensus 16 ~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v-~i~~~~~-g~~ 60 (118)
T 2db1_A 16 EGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGV-HFIYTRE-GRQ 60 (118)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGE-EEEECSS-SCE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeE-EEEECCC-CCC
Confidence 3578999999999999999999999999 7665 5657876 653
No 327
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.65 E-value=1.5e-08 Score=61.94 Aligned_cols=32 Identities=6% Similarity=0.047 Sum_probs=28.7
Q ss_pred CCceEEEEcCCCCCCChHHHHhhhcCCCceee
Q psy11608 53 LATTCVWVDGVAGKCGTGEHNRVNLGYGKSLA 84 (99)
Q Consensus 53 ~~~~~lfVg~l~~~~s~~~L~~~F~~fG~i~~ 84 (99)
.+.++|||+|||.++++++|+++|++||.|+.
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~ 37 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLA 37 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCS
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceE
Confidence 45689999999999999999999999999544
No 328
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.64 E-value=3.5e-08 Score=61.05 Aligned_cols=42 Identities=14% Similarity=0.175 Sum_probs=34.7
Q ss_pred CCCceEEEEcCCCCCCChHHHHhhhcCCCceeeeeEEEEcCCCCCC
Q psy11608 52 SLATTCVWVDGVAGKCGTGEHNRVNLGYGKSLATTCVWVDGVAGKC 97 (99)
Q Consensus 52 ~~~~~~lfVg~l~~~~s~~~L~~~F~~fG~i~~~~~v~~d~~~g~~ 97 (99)
+.+.++|||+|||.++++++|+++|+.|+.| .++.|+.+|++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~----~~~~~~~~~~~ 53 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDTTEETLKESFDGSVRA----RIVTDRETGSS 53 (102)
T ss_dssp SCCCSSEEEECCCTTCCHHHHHHTSTTCSEE----EEEECSSSCSE
T ss_pred CCCCCEEEEeCCCCccCHHHHHHHhcCCeEE----EEEecCCCCCc
Confidence 3457889999999999999999999999755 45578877754
No 329
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=98.64 E-value=3e-08 Score=61.64 Aligned_cols=33 Identities=9% Similarity=0.183 Sum_probs=30.0
Q ss_pred CCceEEEEcCCCC-CCChHHHHhhhcCCCceeee
Q psy11608 53 LATTCVWVDGVAG-KCGTGEHNRVNLGYGKSLAT 85 (99)
Q Consensus 53 ~~~~~lfVg~l~~-~~s~~~L~~~F~~fG~i~~~ 85 (99)
.++++|||+|||. ++++++|+++|++||.|.++
T Consensus 20 ~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v 53 (97)
T 2xnq_A 20 HMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQI 53 (97)
T ss_dssp CTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEE
Confidence 4578999999998 99999999999999999654
No 330
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=98.63 E-value=2.1e-08 Score=62.95 Aligned_cols=40 Identities=18% Similarity=0.147 Sum_probs=32.4
Q ss_pred ceEEEEcCCCCCC------ChHHHHhhhcCCCceeeeeEEEEcCCCCCC
Q psy11608 55 TTCVWVDGVAGKC------GTGEHNRVNLGYGKSLATTCVWVDGVAGKC 97 (99)
Q Consensus 55 ~~~lfVg~l~~~~------s~~~L~~~F~~fG~i~~~~~v~~d~~~g~~ 97 (99)
+++|||||||.++ ++++|+++|++||+|.++ . +.+.+|++
T Consensus 15 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v-~--i~~~~g~~ 60 (105)
T 2nlw_A 15 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITND-F--YPEEDGKT 60 (105)
T ss_dssp CSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEE-E--CCCBTTBS
T ss_pred CCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEE-E--eeCCCCCe
Confidence 5789999999999 679999999999999664 2 33556654
No 331
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.63 E-value=2.9e-08 Score=61.23 Aligned_cols=38 Identities=13% Similarity=0.098 Sum_probs=32.0
Q ss_pred CCceEEEEcCCCCCCChHHHHhhhcCCCceeeeeEEEEcC
Q psy11608 53 LATTCVWVDGVAGKCGTGEHNRVNLGYGKSLATTCVWVDG 92 (99)
Q Consensus 53 ~~~~~lfVg~l~~~~s~~~L~~~F~~fG~i~~~~~v~~d~ 92 (99)
..+++|||+|||.++++++|+++|++||+|. + .+..++
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~-~~~~~~ 54 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALRELGSVP-L-RLTWQG 54 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-S-EEEEET
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-E-EEEcCC
Confidence 3468999999999999999999999999995 3 444554
No 332
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=98.63 E-value=1.4e-08 Score=63.29 Aligned_cols=33 Identities=12% Similarity=0.127 Sum_probs=30.0
Q ss_pred CCceEEEEcCCCCCCChHHHHhhhcCCCceeee
Q psy11608 53 LATTCVWVDGVAGKCGTGEHNRVNLGYGKSLAT 85 (99)
Q Consensus 53 ~~~~~lfVg~l~~~~s~~~L~~~F~~fG~i~~~ 85 (99)
.++++|||+|||+++++++|+++|++||+|..+
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v 41 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERV 41 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEE
Confidence 356889999999999999999999999999764
No 333
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.63 E-value=7.4e-09 Score=65.46 Aligned_cols=33 Identities=0% Similarity=0.079 Sum_probs=29.7
Q ss_pred CCCceEEEEcCCCCCCChHHHHhhhcCCCceee
Q psy11608 52 SLATTCVWVDGVAGKCGTGEHNRVNLGYGKSLA 84 (99)
Q Consensus 52 ~~~~~~lfVg~l~~~~s~~~L~~~F~~fG~i~~ 84 (99)
..++++|||+|||.++++++|+++|++||.|..
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~ 54 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKG 54 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccc
Confidence 345789999999999999999999999999954
No 334
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=98.62 E-value=2.4e-08 Score=62.90 Aligned_cols=42 Identities=10% Similarity=0.039 Sum_probs=35.0
Q ss_pred CceEEEEcCCCCCCChHHHHhhhcCCCc---eeeeeEEEEcCCCCCC
Q psy11608 54 ATTCVWVDGVAGKCGTGEHNRVNLGYGK---SLATTCVWVDGVAGKC 97 (99)
Q Consensus 54 ~~~~lfVg~l~~~~s~~~L~~~F~~fG~---i~~~~~v~~d~~~g~~ 97 (99)
...+|||+|||.++++++|+++|+.||. |..+ .+..|+. |++
T Consensus 10 ~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v-~i~~~~~-g~~ 54 (107)
T 2lmi_A 10 DVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGI-HFLLNRD-GKR 54 (107)
T ss_dssp SCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTE-ECCCCTT-STT
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceE-EEEECCC-CCE
Confidence 4578999999999999999999999998 7665 5557776 654
No 335
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=98.62 E-value=2.7e-08 Score=68.39 Aligned_cols=42 Identities=12% Similarity=0.135 Sum_probs=35.6
Q ss_pred CceEEEEcCCCCCCChHHHHhhhcCCCceeeeeEEEEcCCCCCC
Q psy11608 54 ATTCVWVDGVAGKCGTGEHNRVNLGYGKSLATTCVWVDGVAGKC 97 (99)
Q Consensus 54 ~~~~lfVg~l~~~~s~~~L~~~F~~fG~i~~~~~v~~d~~~g~~ 97 (99)
++++|||+|||.++++++|+++|++||+|..+ .+..|+ +|++
T Consensus 87 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v-~i~~d~-~g~~ 128 (177)
T 2f3j_A 87 TGAKLLVSNLDFGVSDADIQELFAEFGTLKKA-AVDYDR-SGRS 128 (177)
T ss_dssp TCEEEEEECCCSCCCHHHHHHHHHHTSCCSEE-EECCCT-TSSC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEE-EEEECC-CCCE
Confidence 36799999999999999999999999999775 555777 6653
No 336
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.60 E-value=2.8e-08 Score=62.52 Aligned_cols=33 Identities=12% Similarity=0.171 Sum_probs=30.1
Q ss_pred CCceEEEEcCCCCCCChHHHHhhhcCCCceeee
Q psy11608 53 LATTCVWVDGVAGKCGTGEHNRVNLGYGKSLAT 85 (99)
Q Consensus 53 ~~~~~lfVg~l~~~~s~~~L~~~F~~fG~i~~~ 85 (99)
.+.++|||+|||.++++++|+++|++||+|..+
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v 55 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEI 55 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEE
Confidence 356899999999999999999999999999765
No 337
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.60 E-value=3.5e-08 Score=62.75 Aligned_cols=32 Identities=9% Similarity=0.063 Sum_probs=29.0
Q ss_pred CceEEEEcCCCCCCChHHHHhhhcCCCceeee
Q psy11608 54 ATTCVWVDGVAGKCGTGEHNRVNLGYGKSLAT 85 (99)
Q Consensus 54 ~~~~lfVg~l~~~~s~~~L~~~F~~fG~i~~~ 85 (99)
..++|||+|||.++++++|+++|++||+|..+
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v 40 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRV 40 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEE
Confidence 35789999999999999999999999999654
No 338
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.60 E-value=4.4e-08 Score=64.11 Aligned_cols=42 Identities=10% Similarity=-0.133 Sum_probs=34.4
Q ss_pred CceEEEEcCCCCCCChHHHHhhhcCCCce----eeeeEEEEcCCCCCC
Q psy11608 54 ATTCVWVDGVAGKCGTGEHNRVNLGYGKS----LATTCVWVDGVAGKC 97 (99)
Q Consensus 54 ~~~~lfVg~l~~~~s~~~L~~~F~~fG~i----~~~~~v~~d~~~g~~ 97 (99)
+..+|||+|||.++++++|+++|++||+| ..+ .++.|+ +|++
T Consensus 22 ~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v-~i~~d~-~gr~ 67 (123)
T 2dha_A 22 NQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGI-LFVTYP-DGRP 67 (123)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGE-EEEECT-TSCE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceE-EEEECC-CCCE
Confidence 35789999999999999999999999986 344 555774 6764
No 339
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.60 E-value=8.2e-08 Score=58.32 Aligned_cols=41 Identities=12% Similarity=0.031 Sum_probs=34.3
Q ss_pred CCceEEEEcCCCCCCChHHHHhhhcCCCceeeeeEEEEcCCCCC
Q psy11608 53 LATTCVWVDGVAGKCGTGEHNRVNLGYGKSLATTCVWVDGVAGK 96 (99)
Q Consensus 53 ~~~~~lfVg~l~~~~s~~~L~~~F~~fG~i~~~~~v~~d~~~g~ 96 (99)
.+..+|||+|||.++++++|+++|++| .|..+ .+..| .+|+
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v-~i~~~-~~g~ 48 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAI-RIVRN-AHGN 48 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEE-EEEEC-TTSC
T ss_pred CCccEEEEECCCCCCCHHHHHHHHhhC-CceEE-EEEEC-CCCC
Confidence 346889999999999999999999999 88776 55577 5554
No 340
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=98.60 E-value=2.7e-08 Score=65.41 Aligned_cols=34 Identities=9% Similarity=0.127 Sum_probs=29.2
Q ss_pred CCCceEEEEcCCCCCCChHHHH----hhhcCCCceeee
Q psy11608 52 SLATTCVWVDGVAGKCGTGEHN----RVNLGYGKSLAT 85 (99)
Q Consensus 52 ~~~~~~lfVg~l~~~~s~~~L~----~~F~~fG~i~~~ 85 (99)
..|+++|||||||+++++++|+ ++|++||+|+++
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v 63 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDI 63 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEE
Confidence 3467899999999999999876 699999999653
No 341
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=98.60 E-value=3.4e-08 Score=76.50 Aligned_cols=44 Identities=18% Similarity=0.043 Sum_probs=38.3
Q ss_pred CCceEEEEcCCCCCCChHHHHhhhcCCCceeeeeEEEEcCCCCCC
Q psy11608 53 LATTCVWVDGVAGKCGTGEHNRVNLGYGKSLATTCVWVDGVAGKC 97 (99)
Q Consensus 53 ~~~~~lfVg~l~~~~s~~~L~~~F~~fG~i~~~~~v~~d~~~g~~ 97 (99)
.+.++|||+|||.++++++|+++|++||+|..+ .|+.|+.+|++
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v-~i~~d~~tg~~ 143 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRI-HMVYSKRSGKP 143 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEE-EeeccCCCCCc
Confidence 346799999999999999999999999999876 56688877764
No 342
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.59 E-value=3.2e-08 Score=59.93 Aligned_cols=49 Identities=20% Similarity=0.129 Sum_probs=37.9
Q ss_pred ceEEEEEeeCCCCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecCCCC
Q psy11608 2 VMYFVDIKKQSSASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKSLA 54 (99)
Q Consensus 2 ~I~~v~ik~~~~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k~~~ 54 (99)
+|.+|.|.++ ++|||||+|.+.++|++|... ...+.+++|+|.++++.+
T Consensus 31 ~i~~v~i~~~--~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~a~~~~ 79 (88)
T 1wf0_A 31 DVMDVFIPKP--FRAFAFVTFADDQIAQSLCGE--DLIIKGISVHISNAEPKH 79 (88)
T ss_dssp CCCEEECCSS--CCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEECCCCCC
T ss_pred CeeEEEEecC--CCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEecCCCC
Confidence 5778888765 899999999999999764332 235589999999987653
No 343
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=98.58 E-value=2.4e-08 Score=61.83 Aligned_cols=35 Identities=23% Similarity=0.277 Sum_probs=30.2
Q ss_pred eEEEEcCCCCCCChHHHHhhhcCCCceeeeeEEEEc
Q psy11608 56 TCVWVDGVAGKCGTGEHNRVNLGYGKSLATTCVWVD 91 (99)
Q Consensus 56 ~~lfVg~l~~~~s~~~L~~~F~~fG~i~~~~~v~~d 91 (99)
++|||+|||+++++++|+++|++||+|.++ .+..|
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v-~i~~~ 35 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTV-WIARN 35 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEE-EEESS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEE-EEeeC
Confidence 479999999999999999999999999765 44344
No 344
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=98.58 E-value=4.7e-08 Score=59.86 Aligned_cols=34 Identities=12% Similarity=0.270 Sum_probs=30.1
Q ss_pred CCCceEEEEcCCCCCCChHHHH----hhhcCCCceeee
Q psy11608 52 SLATTCVWVDGVAGKCGTGEHN----RVNLGYGKSLAT 85 (99)
Q Consensus 52 ~~~~~~lfVg~l~~~~s~~~L~----~~F~~fG~i~~~ 85 (99)
..++++|||+|||+++++++|+ ++|++||+|..+
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v 42 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDI 42 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEE
Confidence 3467899999999999999999 999999999654
No 345
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=98.56 E-value=2.8e-08 Score=63.99 Aligned_cols=42 Identities=5% Similarity=-0.038 Sum_probs=28.6
Q ss_pred eEEEEeecCC-CCceEEEEcCCCCCCChHHHHhhhcCCC-ceee
Q psy11608 43 NRVNLGYGKS-LATTCVWVDGVAGKCGTGEHNRVNLGYG-KSLA 84 (99)
Q Consensus 43 ~~i~v~~~k~-~~~~~lfVg~l~~~~s~~~L~~~F~~fG-~i~~ 84 (99)
.++.+.|++. ....+|||+|||.++++++|+++|++|| +|..
T Consensus 15 ~~~~~~~~~~p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~ 58 (111)
T 2jvr_A 15 VPRGSHMSKLPAKRYRITMKNLPEGCSWQDLKDLARENSLETTF 58 (111)
T ss_dssp ----------CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSE
T ss_pred eecchhcCCCCCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEE
Confidence 3556677754 3457899999999999999999999999 8854
No 346
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=98.55 E-value=5.6e-08 Score=61.20 Aligned_cols=32 Identities=9% Similarity=0.232 Sum_probs=29.0
Q ss_pred CceEEEEcCCCCC-CChHHHHhhhcCCCceeee
Q psy11608 54 ATTCVWVDGVAGK-CGTGEHNRVNLGYGKSLAT 85 (99)
Q Consensus 54 ~~~~lfVg~l~~~-~s~~~L~~~F~~fG~i~~~ 85 (99)
++++|||+|||.+ +++++|+++|++||+|.++
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v 58 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKYGRVAGC 58 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEE
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEE
Confidence 3579999999999 9999999999999999654
No 347
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=98.54 E-value=2.8e-08 Score=65.29 Aligned_cols=34 Identities=9% Similarity=0.039 Sum_probs=30.7
Q ss_pred CCCCceEEEEcCCCCCCChHHHHhhhcCCCceee
Q psy11608 51 KSLATTCVWVDGVAGKCGTGEHNRVNLGYGKSLA 84 (99)
Q Consensus 51 k~~~~~~lfVg~l~~~~s~~~L~~~F~~fG~i~~ 84 (99)
...++++|||+|||.++++++|+++|++||.|..
T Consensus 41 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~ 74 (143)
T 3egn_A 41 PGEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSS 74 (143)
T ss_dssp CCSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccc
Confidence 3456789999999999999999999999999965
No 348
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=98.53 E-value=3.1e-08 Score=63.30 Aligned_cols=32 Identities=13% Similarity=0.003 Sum_probs=28.4
Q ss_pred CceEEEEcCCCCCCChHHHHhhhcCCCceeee
Q psy11608 54 ATTCVWVDGVAGKCGTGEHNRVNLGYGKSLAT 85 (99)
Q Consensus 54 ~~~~lfVg~l~~~~s~~~L~~~F~~fG~i~~~ 85 (99)
...+|||+|||.++++++|+++|++||+|..+
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~ 46 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYA 46 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEE
Confidence 35789999999999999999999999999765
No 349
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=98.53 E-value=9e-08 Score=63.02 Aligned_cols=42 Identities=21% Similarity=0.200 Sum_probs=33.7
Q ss_pred CCceEEEEcCCCCCCChHHHHhhhcCCCcee--eeeEEEEcCCCCCC
Q psy11608 53 LATTCVWVDGVAGKCGTGEHNRVNLGYGKSL--ATTCVWVDGVAGKC 97 (99)
Q Consensus 53 ~~~~~lfVg~l~~~~s~~~L~~~F~~fG~i~--~~~~v~~d~~~g~~ 97 (99)
.+..+|||+|||.++++++|+++|++| .|+ .+ .+..|+. |++
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v-~i~~d~~-Grs 83 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGI-TLPVDPE-GKI 83 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEE-ECCCCSS-SSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEE-EEEECCC-CCC
Confidence 346789999999999999999999999 565 44 5557776 654
No 350
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.53 E-value=3.7e-08 Score=64.15 Aligned_cols=34 Identities=24% Similarity=0.112 Sum_probs=30.2
Q ss_pred CCCceEEEE--cCCCCCCChHHHHhhhcCCCceeee
Q psy11608 52 SLATTCVWV--DGVAGKCGTGEHNRVNLGYGKSLAT 85 (99)
Q Consensus 52 ~~~~~~lfV--g~l~~~~s~~~L~~~F~~fG~i~~~ 85 (99)
..|+++||| ||||.++++++|+++|++||+|.++
T Consensus 22 ~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v 57 (114)
T 2cq2_A 22 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDAL 57 (114)
T ss_dssp SSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEE
T ss_pred CCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEE
Confidence 456889999 8899999999999999999999543
No 351
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.52 E-value=9.4e-08 Score=58.99 Aligned_cols=33 Identities=6% Similarity=-0.037 Sum_probs=29.5
Q ss_pred CCceEEEEcCCCCCCChHHHHhhhcCC--Cceeee
Q psy11608 53 LATTCVWVDGVAGKCGTGEHNRVNLGY--GKSLAT 85 (99)
Q Consensus 53 ~~~~~lfVg~l~~~~s~~~L~~~F~~f--G~i~~~ 85 (99)
.++++|||+|||.++++++|+++|++| |.|..+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~ 47 (99)
T 2cpd_A 13 SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERV 47 (99)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEE
T ss_pred CCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEE
Confidence 457899999999999999999999999 888654
No 352
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=98.51 E-value=4.9e-08 Score=61.27 Aligned_cols=33 Identities=3% Similarity=0.093 Sum_probs=30.1
Q ss_pred CceEEEEcCCCCCCChHHHHhhhcCCCceeeee
Q psy11608 54 ATTCVWVDGVAGKCGTGEHNRVNLGYGKSLATT 86 (99)
Q Consensus 54 ~~~~lfVg~l~~~~s~~~L~~~F~~fG~i~~~~ 86 (99)
.+..||||||++.+|+++|+++|++||+|.++.
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~ 38 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFH 38 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEE
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEE
Confidence 368899999999999999999999999997753
No 353
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.50 E-value=3.1e-07 Score=57.84 Aligned_cols=44 Identities=7% Similarity=0.270 Sum_probs=37.3
Q ss_pred eEEEEEeeCCCCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecCC
Q psy11608 3 MYFVDIKKQSSASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKS 52 (99)
Q Consensus 3 I~~v~ik~~~~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k~ 52 (99)
|..|.+-.+ .+||+|.+.++|.+|++ |||..++|++++|..+.+
T Consensus 42 Vi~vr~~~d-----~~fVtF~d~~sAlaAi~-mnG~~v~Gr~LkV~lkt~ 85 (91)
T 2dnr_A 42 VILIRFVED-----KMWVTFLEGSSALNVLS-LNGKELLNRTITIALKSP 85 (91)
T ss_dssp EEEEEECSS-----SEEEEESSHHHHHHGGG-GTTCEETTEEEEEEECCC
T ss_pred eEEEEEecC-----CEEEEECChHHHHHHHh-cCCeEeCCeEEEEEeCCC
Confidence 556666653 49999999999999998 999999999999987653
No 354
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=98.48 E-value=1.4e-07 Score=67.38 Aligned_cols=51 Identities=14% Similarity=0.152 Sum_probs=43.3
Q ss_pred ceEEEEEeeCC--CCCCeEEEEeCCHHHHHHHHHhh-CCeEeC---CeEEEEeecCC
Q psy11608 2 VMYFVDIKKQS--SASAFAFVQYTDIASVVRAMRAM-DGEYVG---HNRVNLGYGKS 52 (99)
Q Consensus 2 ~I~~v~ik~~~--~s~gfaFV~F~~~~~a~~Ai~~m-~G~~i~---~~~i~v~~~k~ 52 (99)
.|.+|.|..+. .++|||||+|.+.++|.+|++.| +|..+. +++|.|.+++.
T Consensus 122 ~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~~~~~ 178 (261)
T 3sde_A 122 PVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQ 178 (261)
T ss_dssp CEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEEEECCC
T ss_pred CeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEEeeccc
Confidence 57888888775 67999999999999999999999 566665 88999988754
No 355
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=98.45 E-value=1e-07 Score=58.36 Aligned_cols=32 Identities=9% Similarity=-0.118 Sum_probs=29.1
Q ss_pred CCceEEEEcCCCCCCChHHHHhhhcCCCceee
Q psy11608 53 LATTCVWVDGVAGKCGTGEHNRVNLGYGKSLA 84 (99)
Q Consensus 53 ~~~~~lfVg~l~~~~s~~~L~~~F~~fG~i~~ 84 (99)
.+.++|||+|||.++++++|+++|++||.|..
T Consensus 14 ~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~ 45 (96)
T 1fjc_A 14 RAARTLLAKNLSFNITEDELKEVFEDALEIRL 45 (96)
T ss_dssp TGGGEEEEESCCSSCCHHHHHHHHCSEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEE
Confidence 45789999999999999999999999999953
No 356
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=98.43 E-value=1.6e-07 Score=56.23 Aligned_cols=28 Identities=4% Similarity=-0.168 Sum_probs=25.9
Q ss_pred CCCceEEEEcCCCCCCChHHHHhhhcCC
Q psy11608 52 SLATTCVWVDGVAGKCGTGEHNRVNLGY 79 (99)
Q Consensus 52 ~~~~~~lfVg~l~~~~s~~~L~~~F~~f 79 (99)
+.+.++|||+|||.++++++|+++|++|
T Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~ 30 (87)
T 2hzc_A 3 LGSARRLYVGNIPFGITEEAMMDFFNAQ 30 (87)
T ss_dssp SGGGGEEEEESCCTTCCHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHH
Confidence 3457899999999999999999999999
No 357
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.42 E-value=2.4e-07 Score=59.27 Aligned_cols=40 Identities=20% Similarity=0.149 Sum_probs=33.3
Q ss_pred ceEEEEcCCCCCCChHHHHhhhcCCCceeeeeEEEEcCCCCCC
Q psy11608 55 TTCVWVDGVAGKCGTGEHNRVNLGYGKSLATTCVWVDGVAGKC 97 (99)
Q Consensus 55 ~~~lfVg~l~~~~s~~~L~~~F~~fG~i~~~~~v~~d~~~g~~ 97 (99)
..+|||+|||.++++++|+++|++| .|..+ .+..|+. |++
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v-~i~~d~~-g~~ 55 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAV-HLLKDHV-GRN 55 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCEE-EECCCTT-CCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeEE-EEEECCC-CCC
Confidence 4689999999999999999999999 78665 5557875 543
No 358
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=98.39 E-value=2.8e-07 Score=55.84 Aligned_cols=31 Identities=10% Similarity=0.104 Sum_probs=28.0
Q ss_pred CceEEEEcCCCCCCChHHHHhhhcCCCceeee
Q psy11608 54 ATTCVWVDGVAGKCGTGEHNRVNLGYGKSLAT 85 (99)
Q Consensus 54 ~~~~lfVg~l~~~~s~~~L~~~F~~fG~i~~~ 85 (99)
+.++|||+|||+++++++|+++|++| +|.++
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~ 34 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYC 34 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEE
Confidence 46789999999999999999999999 88654
No 359
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=98.39 E-value=2.1e-07 Score=64.12 Aligned_cols=31 Identities=10% Similarity=0.071 Sum_probs=28.6
Q ss_pred ceEEEEcCCCCCCChHHHHhhhcCCCceeee
Q psy11608 55 TTCVWVDGVAGKCGTGEHNRVNLGYGKSLAT 85 (99)
Q Consensus 55 ~~~lfVg~l~~~~s~~~L~~~F~~fG~i~~~ 85 (99)
..+|||+|||..+++++|+++|++||+|.++
T Consensus 46 vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V 76 (164)
T 1sjr_A 46 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKI 76 (164)
T ss_dssp EEEEEECSCCSCCCHHHHHHHHHHHSCEEEE
T ss_pred eEEEEEeCcCCCCCHHHHHHHHHhcCCEEEE
Confidence 4579999999999999999999999999765
No 360
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.38 E-value=3.6e-07 Score=60.02 Aligned_cols=31 Identities=10% Similarity=-0.138 Sum_probs=27.9
Q ss_pred eEEEEcCCCCCCChHHHHhhhcCCCceeeee
Q psy11608 56 TCVWVDGVAGKCGTGEHNRVNLGYGKSLATT 86 (99)
Q Consensus 56 ~~lfVg~l~~~~s~~~L~~~F~~fG~i~~~~ 86 (99)
-.|||+|||..+++++|+++|++||+|.++.
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~ 56 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIV 56 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEE
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEE
Confidence 4578999999999999999999999997763
No 361
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=98.38 E-value=4.8e-07 Score=60.05 Aligned_cols=31 Identities=10% Similarity=0.071 Sum_probs=28.6
Q ss_pred ceEEEEcCCCCCCChHHHHhhhcCCCceeee
Q psy11608 55 TTCVWVDGVAGKCGTGEHNRVNLGYGKSLAT 85 (99)
Q Consensus 55 ~~~lfVg~l~~~~s~~~L~~~F~~fG~i~~~ 85 (99)
--+|||+||+..+++++|+++|++||+|.++
T Consensus 28 VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V 58 (130)
T 3zzy_A 28 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKI 58 (130)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTSSCEEEE
T ss_pred eEEEEECCCCCCCCHHHHHHHHhCcCCEEEE
Confidence 4578899999999999999999999999876
No 362
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=98.36 E-value=5.4e-07 Score=62.94 Aligned_cols=32 Identities=19% Similarity=0.153 Sum_probs=29.3
Q ss_pred CceEEEEcCCC-CCCChHHHHhhhcCCCceeee
Q psy11608 54 ATTCVWVDGVA-GKCGTGEHNRVNLGYGKSLAT 85 (99)
Q Consensus 54 ~~~~lfVg~l~-~~~s~~~L~~~F~~fG~i~~~ 85 (99)
++.+|||+||| .++++++|+++|++||+|.++
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v 35 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKV 35 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEE
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEE
Confidence 46789999999 799999999999999999765
No 363
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.30 E-value=1.2e-06 Score=53.76 Aligned_cols=31 Identities=10% Similarity=0.054 Sum_probs=27.3
Q ss_pred CCceEEEEcCCCCCCChHHHHhhhcCCCceeee
Q psy11608 53 LATTCVWVDGVAGKCGTGEHNRVNLGYGKSLAT 85 (99)
Q Consensus 53 ~~~~~lfVg~l~~~~s~~~L~~~F~~fG~i~~~ 85 (99)
.+.++|||+|| ++++++|+++|++||+|..+
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v 43 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDL 43 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTSCEEEE
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEE
Confidence 45689999996 89999999999999999654
No 364
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=98.26 E-value=4.6e-07 Score=65.63 Aligned_cols=33 Identities=15% Similarity=0.117 Sum_probs=29.9
Q ss_pred CceEEEEcCCCCCC---------ChHHHHhhhcCCCceeeee
Q psy11608 54 ATTCVWVDGVAGKC---------GTGEHNRVNLGYGKSLATT 86 (99)
Q Consensus 54 ~~~~lfVg~l~~~~---------s~~~L~~~F~~fG~i~~~~ 86 (99)
++++|||||||.++ ++++|+++|++||+|+++.
T Consensus 133 ~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~ 174 (240)
T 3u1l_A 133 KNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIR 174 (240)
T ss_dssp CCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEE
T ss_pred CCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEE
Confidence 46899999999998 7999999999999998763
No 365
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.24 E-value=1.2e-06 Score=55.51 Aligned_cols=42 Identities=21% Similarity=0.336 Sum_probs=35.3
Q ss_pred eEEEEEeeCCCCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeec
Q psy11608 3 MYFVDIKKQSSASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYG 50 (99)
Q Consensus 3 I~~v~ik~~~~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~ 50 (99)
|..|.+-.|. +||+|.|.++|.+||+ |||..++++.++|++.
T Consensus 51 Vilvr~v~d~-----~fVtF~d~~sAl~AI~-ldG~~v~Gr~L~V~~k 92 (95)
T 1ufw_A 51 IVLVRINQGQ-----MLVTFADSHSALSVLD-VDGMKVKGRAVKISGP 92 (95)
T ss_dssp CSEEEEETTE-----EEEECSCSHHHHHHHH-GGGSEETTEEEEEECC
T ss_pred EEEEEEecCc-----EEEEEcChHHHHHHHh-cCCeeeCCeEEEEecc
Confidence 3445555543 9999999999999998 9999999999999864
No 366
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.17 E-value=1.9e-06 Score=54.72 Aligned_cols=33 Identities=15% Similarity=0.181 Sum_probs=27.8
Q ss_pred CCceE-EEEcCCCCCCChHH----HHhhhcCC-Cceeee
Q psy11608 53 LATTC-VWVDGVAGKCGTGE----HNRVNLGY-GKSLAT 85 (99)
Q Consensus 53 ~~~~~-lfVg~l~~~~s~~~----L~~~F~~f-G~i~~~ 85 (99)
.|+.+ |||+|||.++++++ |+++|++| |+|+++
T Consensus 6 ~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V 44 (96)
T 2diu_A 6 SGCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI 44 (96)
T ss_dssp CCSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC
T ss_pred CCcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE
Confidence 45666 99999999999988 56899999 599765
No 367
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=98.12 E-value=1.7e-06 Score=65.57 Aligned_cols=38 Identities=16% Similarity=0.041 Sum_probs=31.8
Q ss_pred CCCceEEEEcC--CCCCCChHHHHhhhcCCCceeeeeEEEEcC
Q psy11608 52 SLATTCVWVDG--VAGKCGTGEHNRVNLGYGKSLATTCVWVDG 92 (99)
Q Consensus 52 ~~~~~~lfVg~--l~~~~s~~~L~~~F~~fG~i~~~~~v~~d~ 92 (99)
+.|+++||||| |+..+|+++|+++|++||+|. .|.+++
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~---~v~~~~ 54 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVD---ALLMPP 54 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEE---EEECCT
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeE---EEEEeC
Confidence 46789999998 578999999999999999995 344554
No 368
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=98.09 E-value=3.7e-06 Score=54.26 Aligned_cols=31 Identities=10% Similarity=0.054 Sum_probs=27.4
Q ss_pred CCceEEEEcCCCCCCChHHHHhhhcCCCceeee
Q psy11608 53 LATTCVWVDGVAGKCGTGEHNRVNLGYGKSLAT 85 (99)
Q Consensus 53 ~~~~~lfVg~l~~~~s~~~L~~~F~~fG~i~~~ 85 (99)
.++++|||+|| ++++++|+++|++||+|.++
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v 67 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDL 67 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCE
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEE
Confidence 45789999996 69999999999999999765
No 369
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.98 E-value=2.4e-06 Score=56.11 Aligned_cols=41 Identities=7% Similarity=-0.107 Sum_probs=32.4
Q ss_pred CceEEEEcCCCCC-CChHHHHhhhcCCCceeeeeEEEEcCCCC
Q psy11608 54 ATTCVWVDGVAGK-CGTGEHNRVNLGYGKSLATTCVWVDGVAG 95 (99)
Q Consensus 54 ~~~~lfVg~l~~~-~s~~~L~~~F~~fG~i~~~~~v~~d~~~g 95 (99)
+..-|||+||+++ +++++|++.|++||+|..+ .+..|+.+|
T Consensus 17 ~G~il~v~~l~~~~~sredLke~F~~~G~V~~V-d~~~g~~tg 58 (121)
T 1owx_A 17 IGCLLKFSGDLDDQTCREDLHILFSNHGEIKWI-DFVRGAKEG 58 (121)
T ss_dssp CCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEE-ECCTTCSEE
T ss_pred CCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEE-EEecCCCEE
Confidence 3567999999999 9999999999999999654 333455443
No 370
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.68 E-value=5e-05 Score=47.82 Aligned_cols=44 Identities=7% Similarity=0.004 Sum_probs=32.7
Q ss_pred CCCCceEEEEcCCCCCCC-----------hHHHHhhhcCCCceeeeeEEEEcCCCCC
Q psy11608 51 KSLATTCVWVDGVAGKCG-----------TGEHNRVNLGYGKSLATTCVWVDGVAGK 96 (99)
Q Consensus 51 k~~~~~~lfVg~l~~~~s-----------~~~L~~~F~~fG~i~~~~~v~~d~~~g~ 96 (99)
++.+++.|+|.||....+ +++|+++|++||+|.++ .+ .|+.+.+
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v-~i-~~~~~~G 65 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKL-LL-FDRHPDG 65 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEE-EE-ETTCTTC
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEE-EE-ecCCCCE
Confidence 456788999999944332 58999999999999875 44 6765433
No 371
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=97.67 E-value=6.4e-05 Score=47.43 Aligned_cols=42 Identities=19% Similarity=0.092 Sum_probs=32.4
Q ss_pred CCCceEEEEcCCCC-----CCChHHHHhhhcCCCceeeeeEEEEcCCC
Q psy11608 52 SLATTCVWVDGVAG-----KCGTGEHNRVNLGYGKSLATTCVWVDGVA 94 (99)
Q Consensus 52 ~~~~~~lfVg~l~~-----~~s~~~L~~~F~~fG~i~~~~~v~~d~~~ 94 (99)
+.|++.|++.|+.. +-.+++|++.|++||+|.++ .+..|+.+
T Consensus 5 ~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v-~i~~~~~~ 51 (105)
T 2pe8_A 5 KCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKC-VIFEIPGA 51 (105)
T ss_dssp GSCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEE-EEEECSSC
T ss_pred CCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEE-EEecCCCC
Confidence 35688999999963 23689999999999999876 55577643
No 372
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=96.93 E-value=0.00082 Score=43.26 Aligned_cols=39 Identities=10% Similarity=0.102 Sum_probs=30.1
Q ss_pred CceEEEEcCCC--CCC---ChHHHHhhhcCCCceeeeeEEEEcCC
Q psy11608 54 ATTCVWVDGVA--GKC---GTGEHNRVNLGYGKSLATTCVWVDGV 93 (99)
Q Consensus 54 ~~~~lfVg~l~--~~~---s~~~L~~~F~~fG~i~~~~~v~~d~~ 93 (99)
|++.|++.|+- .++ -++||++.|++||+|.++ .|..|+.
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v-~I~~~~~ 62 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRV-IIYQEKQ 62 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEE-EEEEEEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEE-EEeecCC
Confidence 67899999973 233 268999999999999876 5557764
No 373
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.89 E-value=0.0011 Score=43.36 Aligned_cols=44 Identities=5% Similarity=0.178 Sum_probs=35.5
Q ss_pred ceEEEEEeeCCCCCCeEEEEeCC-HHHHHHHHHhhC--CeEeCCeEEEEe
Q psy11608 2 VMYFVDIKKQSSASAFAFVQYTD-IASVVRAMRAMD--GEYVGHNRVNLG 48 (99)
Q Consensus 2 ~I~~v~ik~~~~s~gfaFV~F~~-~~~a~~Ai~~m~--G~~i~~~~i~v~ 48 (99)
.|..|++.++.. .|||.|.+ +++|..|+++|| |..|.+..+++.
T Consensus 45 ~V~~Vd~~~g~~---tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~e 91 (121)
T 1owx_A 45 EIKWIDFVRGAK---EGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWE 91 (121)
T ss_dssp CEEEEECCTTCS---EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEE
T ss_pred CEEEEEEecCCC---EEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEE
Confidence 578888887754 59999999 899999999994 667777666553
No 374
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=96.85 E-value=0.00049 Score=43.22 Aligned_cols=41 Identities=7% Similarity=-0.106 Sum_probs=30.4
Q ss_pred CCceEEEEcCC--CCCCCh--------HHHHhhhcCCCceeeeeEEEEcCCC
Q psy11608 53 LATTCVWVDGV--AGKCGT--------GEHNRVNLGYGKSLATTCVWVDGVA 94 (99)
Q Consensus 53 ~~~~~lfVg~l--~~~~s~--------~~L~~~F~~fG~i~~~~~v~~d~~~ 94 (99)
.|++.|.+.|+ |.++.+ +||++.|++||+|.++ .+..|+.+
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v-~i~~~~~~ 53 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSI-EIPRPVDG 53 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEE-ECCCCBTT
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEE-EEeccCCC
Confidence 46788999997 445443 6999999999999775 44466543
No 375
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.76 E-value=0.0011 Score=41.44 Aligned_cols=38 Identities=18% Similarity=0.215 Sum_probs=26.8
Q ss_pred CeEEEEeecCCCCceEEEEcCCCCCCChHHHHhhhcCCCceeee
Q psy11608 42 HNRVNLGYGKSLATTCVWVDGVAGKCGTGEHNRVNLGYGKSLAT 85 (99)
Q Consensus 42 ~~~i~v~~~k~~~~~~lfVg~l~~~~s~~~L~~~F~~fG~i~~~ 85 (99)
.++++|.|..... ..-++++++++|+++|++||+|.++
T Consensus 10 ~~~~~v~w~~~~~------~~~~~~~te~~L~~~F~~~G~V~~v 47 (100)
T 2d9o_A 10 TPKLKLKWKCKKE------DESKGGYSKDVLLRLLQKYGEVLNL 47 (100)
T ss_dssp SCEEEEECCCCSS------CSCCCSCCHHHHHHHHHTTSCEEEE
T ss_pred cceEEEeeeccCc------cCcCCCCCHHHHHHHHHhcCCEEEE
Confidence 3467777643221 1124789999999999999999765
No 376
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=96.60 E-value=0.0072 Score=39.29 Aligned_cols=34 Identities=12% Similarity=0.177 Sum_probs=31.6
Q ss_pred CCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEe
Q psy11608 15 SAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLG 48 (99)
Q Consensus 15 ~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~ 48 (99)
-+-|+|+|.|..+|-+|.-++||..+.|++|+++
T Consensus 62 H~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~g 95 (117)
T 2l9w_A 62 FNGAIIIFRDSKFAAKMLMILNGSQFQGKVIRSG 95 (117)
T ss_dssp TTEEEEECSCHHHHHHHHHHHSSEEETTEEEEEE
T ss_pred CCceEEEEccchhhHHHHhhcCCeeecCeEEEec
Confidence 4559999999999999999999999999999986
No 377
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.26 E-value=0.0045 Score=39.56 Aligned_cols=41 Identities=10% Similarity=0.079 Sum_probs=35.6
Q ss_pred CCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecCCCC
Q psy11608 14 ASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKSLA 54 (99)
Q Consensus 14 s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k~~~ 54 (99)
|-.=.-|.|.++++|.+|...|+|..+.|+++|+.||++.+
T Consensus 45 SFRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YFgq~~~ 85 (104)
T 1wey_A 45 SFKRVRINFSNPLSAADARLRLHKTEFLGKEMKLYFAQTLH 85 (104)
T ss_dssp TTTEEEEECSSTTHHHHHHHTSTTSEETTEECEEECCCCSS
T ss_pred cceEEEEEeCChHHHHHHHHHhccceecCceeEEEecCCCC
Confidence 33445799999999999999999999999999999998543
No 378
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=95.84 E-value=0.01 Score=37.68 Aligned_cols=34 Identities=15% Similarity=0.325 Sum_probs=27.4
Q ss_pred ceEEEEcCCCCCCChHHHHhhhcCCCceeeeeEEEEcC
Q psy11608 55 TTCVWVDGVAGKCGTGEHNRVNLGYGKSLATTCVWVDG 92 (99)
Q Consensus 55 ~~~lfVg~l~~~~s~~~L~~~F~~fG~i~~~~~v~~d~ 92 (99)
++-+++ ++|+.+...||.++|++||.| ..=|+|-
T Consensus 16 ~HVf~l-~FP~ewKt~DI~~lFs~fggv---~I~WidD 49 (100)
T 1whv_A 16 DHVLHV-TFPKEWKTSDLYQLFSAFGNI---QISWIDD 49 (100)
T ss_dssp CSEEEE-ECCTTCCHHHHHHHHTTTCSC---CCEEEET
T ss_pred CeEEEE-eCChhhhhHHHHHHhhccCCE---EEEEEcC
Confidence 455777 899999999999999999987 3445554
No 379
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=95.81 E-value=0.00047 Score=43.17 Aligned_cols=33 Identities=18% Similarity=0.095 Sum_probs=24.6
Q ss_pred EEcCCCCCCChHHHHhhh------------cCCCceeeeeEEEEcC
Q psy11608 59 WVDGVAGKCGTGEHNRVN------------LGYGKSLATTCVWVDG 92 (99)
Q Consensus 59 fVg~l~~~~s~~~L~~~F------------~~fG~i~~~~~v~~d~ 92 (99)
.+.|||.++++++|+++| ++||+|.++ .+..|+
T Consensus 19 ~~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v-~i~~~~ 63 (104)
T 1jmt_A 19 SADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEM-NVCDNL 63 (104)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEE-EECCSS
T ss_pred ccCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEE-EEEeCC
Confidence 467888888998888777 999999775 443554
No 380
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=95.79 E-value=0.011 Score=37.59 Aligned_cols=33 Identities=15% Similarity=0.335 Sum_probs=27.0
Q ss_pred eEEEEcCCCCCCChHHHHhhhcCCCceeeeeEEEEcC
Q psy11608 56 TCVWVDGVAGKCGTGEHNRVNLGYGKSLATTCVWVDG 92 (99)
Q Consensus 56 ~~lfVg~l~~~~s~~~L~~~F~~fG~i~~~~~v~~d~ 92 (99)
+-+++ ++|+.+...||.++|++||.| ..=|+|-
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fggv---~I~WidD 39 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGNI---QISWIDD 39 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEEE---EEEEEET
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCCE---EEEEEcC
Confidence 44666 899999999999999999977 4555664
No 381
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.45 E-value=0.031 Score=35.62 Aligned_cols=53 Identities=9% Similarity=0.116 Sum_probs=39.9
Q ss_pred CeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecCCCCceEEEEcCCCCCCCh
Q psy11608 16 AFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKSLATTCVWVDGVAGKCGT 69 (99)
Q Consensus 16 gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k~~~~~~lfVg~l~~~~s~ 69 (99)
+-|.|+|.+.+.|++.++.- -+.+.+.++.|.-.-+....+|++.||++.++.
T Consensus 48 ~~AvItF~d~~va~rVL~k~-~H~L~~~~LsV~P~~~~~~~r~ll~gl~~~t~~ 100 (104)
T 2dhx_A 48 CGGVLTFREPADAERVLAQA-DHELHGAQLSLRPAPPRAPARLLLQGLPPGTSG 100 (104)
T ss_dssp TEEEEEESSHHHHHHHHTCS-CCBSSSSBCEEEECCCCCCCCCCCCSCCCCCCC
T ss_pred CcEEEEEcChHHHHHHhcCC-cceecCeEEEEEcCCCCCcceEeeecCCCCCCC
Confidence 67899999999999999752 234445566665444455689999999999874
No 382
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=95.25 E-value=0.045 Score=34.76 Aligned_cols=40 Identities=18% Similarity=0.179 Sum_probs=27.3
Q ss_pred CCCceEEEEcCCCC--CC--------ChHHHHhhhcCCCceeeeeEEEEcCCC
Q psy11608 52 SLATTCVWVDGVAG--KC--------GTGEHNRVNLGYGKSLATTCVWVDGVA 94 (99)
Q Consensus 52 ~~~~~~lfVg~l~~--~~--------s~~~L~~~F~~fG~i~~~~~v~~d~~~ 94 (99)
+.|++.|-+.|+=. +. -++||++.|++||+|.+ |.+++.+
T Consensus 4 p~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~---v~i~~~~ 53 (114)
T 3s6e_A 4 PLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIH---IYVDKNS 53 (114)
T ss_dssp CCCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSE---EEECTTC
T ss_pred CCCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEE---EEEecCC
Confidence 45778888888622 21 14588999999999954 4455544
No 383
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.42 E-value=0.028 Score=35.01 Aligned_cols=39 Identities=13% Similarity=-0.016 Sum_probs=27.0
Q ss_pred CCceEEEEcCCCC----CCCh----HHHHhhhcCCCceeeeeEEEEcC
Q psy11608 53 LATTCVWVDGVAG----KCGT----GEHNRVNLGYGKSLATTCVWVDG 92 (99)
Q Consensus 53 ~~~~~lfVg~l~~----~~s~----~~L~~~F~~fG~i~~~~~v~~d~ 92 (99)
.|..+|+|.-+|. ++-+ .+|.+.|++||+|+.+ ++..|+
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~v-r~~~d~ 51 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILI-RFVEDK 51 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEE-EECSSS
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEE-EEecCC
Confidence 4667888876662 3334 7899999999999776 443443
No 384
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=93.47 E-value=0.033 Score=43.64 Aligned_cols=37 Identities=11% Similarity=0.100 Sum_probs=28.1
Q ss_pred ceEEEEcCCCCCCChHHHHhhhcCCCceeeeeEEEEcCCCC
Q psy11608 55 TTCVWVDGVAGKCGTGEHNRVNLGYGKSLATTCVWVDGVAG 95 (99)
Q Consensus 55 ~~~lfVg~l~~~~s~~~L~~~F~~fG~i~~~~~v~~d~~~g 95 (99)
-+.|+|. .|+.+++.+|.++|++||+| ..+..|+..|
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i---~~~~~~~~~g 89 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPI---NNHFFYESFG 89 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCC---CCEEEECSSS
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCc---ceEEEEccCC
Confidence 4679998 79999999999999999999 4555776555
No 385
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=89.81 E-value=0.41 Score=29.47 Aligned_cols=32 Identities=3% Similarity=-0.193 Sum_probs=27.3
Q ss_pred eEEEEcCCCCCCChHHHHhhhcCCCceeeeeE
Q psy11608 56 TCVWVDGVAGKCGTGEHNRVNLGYGKSLATTC 87 (99)
Q Consensus 56 ~~lfVg~l~~~~s~~~L~~~F~~fG~i~~~~~ 87 (99)
.+|-|..|||+++++++.+..+.+..+.-...
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~f 33 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEF 33 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEE
Confidence 47889999999999999999999987754433
No 386
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=89.63 E-value=0.21 Score=31.25 Aligned_cols=33 Identities=15% Similarity=-0.050 Sum_probs=25.6
Q ss_pred CCceEEEEcCCCCC-----CCh----HHHHhhhcCCCceeee
Q psy11608 53 LATTCVWVDGVAGK-----CGT----GEHNRVNLGYGKSLAT 85 (99)
Q Consensus 53 ~~~~~lfVg~l~~~-----~s~----~~L~~~F~~fG~i~~~ 85 (99)
.|+.+|+|.-++++ +-+ .+|.+.|++||+|+.+
T Consensus 13 PpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilv 54 (95)
T 1ufw_A 13 PLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLV 54 (95)
T ss_dssp CTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEE
T ss_pred CCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEE
Confidence 57889999988753 222 6799999999999765
No 387
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=86.77 E-value=1.9 Score=27.76 Aligned_cols=30 Identities=20% Similarity=0.444 Sum_probs=26.2
Q ss_pred CCCCCeEEEEeCCHHHHHHHHHhhCCeEeCC
Q psy11608 12 SSASAFAFVQYTDIASVVRAMRAMDGEYVGH 42 (99)
Q Consensus 12 ~~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~ 42 (99)
+....+-.|.|.+..+|++|+.. ||..+++
T Consensus 56 ~~~~NWihI~Y~s~~~A~rAL~k-NG~ii~g 85 (119)
T 1wwh_A 56 SNTGNWMHIRYQSKLQARKALSK-DGRIFGE 85 (119)
T ss_dssp CSSSSEEEEEESSHHHHHHHHTT-TTCEETT
T ss_pred CCCCCeEEEEeCCHHHHHHHHHh-CCeEecC
Confidence 45678999999999999999986 9998875
No 388
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=84.62 E-value=0.73 Score=29.20 Aligned_cols=31 Identities=16% Similarity=-0.022 Sum_probs=26.2
Q ss_pred ceEEEEcCCCCCCChHHHHhhhcC-C----Cceeee
Q psy11608 55 TTCVWVDGVAGKCGTGEHNRVNLG-Y----GKSLAT 85 (99)
Q Consensus 55 ~~~lfVg~l~~~~s~~~L~~~F~~-f----G~i~~~ 85 (99)
..+|.|-|||++++++.|+-+|+. . |+|..+
T Consensus 8 ~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v 43 (104)
T 2dhx_A 8 GVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSW 43 (104)
T ss_dssp CCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEE
T ss_pred ccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEE
Confidence 468999999999999999999998 2 677443
No 389
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=83.20 E-value=0.92 Score=30.80 Aligned_cols=26 Identities=12% Similarity=0.049 Sum_probs=19.7
Q ss_pred CChHHHHhhhcCCCceeeeeEEEEcCC
Q psy11608 67 CGTGEHNRVNLGYGKSLATTCVWVDGV 93 (99)
Q Consensus 67 ~s~~~L~~~F~~fG~i~~~~~v~~d~~ 93 (99)
-.+++|++.|++||+|.++ .|..+..
T Consensus 141 e~~~dl~~e~~~~G~v~~~-~v~~~~~ 166 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRV-IIYQEKQ 166 (222)
T ss_dssp THHHHHHHHHTTTSCEEEE-EEEEEEC
T ss_pred HHHHHHHHHHHccCCeEEE-EEecCCC
Confidence 3578999999999999775 5545543
No 390
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=82.26 E-value=1.4 Score=28.96 Aligned_cols=32 Identities=19% Similarity=0.307 Sum_probs=26.6
Q ss_pred CCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEE
Q psy11608 14 ASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVN 46 (99)
Q Consensus 14 s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~ 46 (99)
..+.--|+|.++.+|++|+.. ||..++|.-|=
T Consensus 61 g~NWikItYds~~~A~rAL~~-NG~ii~G~mIG 92 (132)
T 3p3d_A 61 GNSWTKITYDNPASAVDALLE-NGAVFNGVLLG 92 (132)
T ss_dssp ETTEEEEEBSSHHHHHHHHTT-TTCEETTEECE
T ss_pred CCcEEEEEcCCHHHHHHHHHh-CCeEeCcEEEE
Confidence 466779999999999999985 89888886443
No 391
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=80.39 E-value=1.1 Score=27.89 Aligned_cols=29 Identities=3% Similarity=-0.126 Sum_probs=24.3
Q ss_pred CceEEEEcCCCCCCChHHHHhhhcCCCce
Q psy11608 54 ATTCVWVDGVAGKCGTGEHNRVNLGYGKS 82 (99)
Q Consensus 54 ~~~~lfVg~l~~~~s~~~L~~~F~~fG~i 82 (99)
.+-+|-|..|||++|++++.+.++..=++
T Consensus 8 ~~~KvVIRrLPP~Ltee~F~~~l~~~~~~ 36 (97)
T 2l08_A 8 HSHMVVIRRLPPGLTKEQLEEQLRPLPAH 36 (97)
T ss_dssp CCCCEEEECCCSCSCHHHHTTTTSCCSSE
T ss_pred cceeEEEeCCCCCCCHHHHHHHhCCcCcc
Confidence 45689999999999999999888876443
No 392
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=74.90 E-value=8.5 Score=23.13 Aligned_cols=27 Identities=15% Similarity=0.222 Sum_probs=22.7
Q ss_pred CCCCCeEEEEeCCHHHHHHHHHhhCCe
Q psy11608 12 SSASAFAFVQYTDIASVVRAMRAMDGE 38 (99)
Q Consensus 12 ~~s~gfaFV~F~~~~~a~~Ai~~m~G~ 38 (99)
..=+||-||++...++...+++.+.|.
T Consensus 47 ~~fPGYVfVe~~~~~~~~~~I~~t~gV 73 (92)
T 3lpe_A 47 ESLKGYVLVEAETKGDVEELIKGMPRV 73 (92)
T ss_dssp TTSTTEEEEEESSHHHHHHHHTTCTTE
T ss_pred cccCCEEEEEEecchhHHHHHHCCCCc
Confidence 357899999999999998899877654
No 393
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=73.00 E-value=3.4 Score=32.31 Aligned_cols=34 Identities=15% Similarity=0.336 Sum_probs=27.7
Q ss_pred ceEEEEcCCCCCCChHHHHhhhcCCCceeeeeEEEEcC
Q psy11608 55 TTCVWVDGVAGKCGTGEHNRVNLGYGKSLATTCVWVDG 92 (99)
Q Consensus 55 ~~~lfVg~l~~~~s~~~L~~~F~~fG~i~~~~~v~~d~ 92 (99)
.+.++|+ +|+.+...+|++.|+.||.+ ...++|.
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v---~V~widd 473 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNI---QISWIDD 473 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCC---EEEECSS
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCE---EEEEEcC
Confidence 4567777 99999999999999999977 3456665
No 394
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=72.61 E-value=3.4 Score=26.61 Aligned_cols=30 Identities=23% Similarity=0.078 Sum_probs=25.3
Q ss_pred ceEEEEcCCCCCCChHHHHhhhcCCCceeee
Q psy11608 55 TTCVWVDGVAGKCGTGEHNRVNLGYGKSLAT 85 (99)
Q Consensus 55 ~~~lfVg~l~~~~s~~~L~~~F~~fG~i~~~ 85 (99)
.+.|-|=|.|+.. ...+-++|++||+|++.
T Consensus 24 ~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~ 53 (119)
T 1wwh_A 24 DTWVTVFGFPQAS-ASYILLQFAQYGNILKH 53 (119)
T ss_dssp GGEEEEECCCGGG-HHHHHHHHHTTSCEEEE
T ss_pred CCEEEEECCCHHH-HHHHHHHHHhhCcEEEe
Confidence 5789998999994 77788999999999754
No 395
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=72.18 E-value=2.8 Score=26.44 Aligned_cols=29 Identities=7% Similarity=0.030 Sum_probs=23.5
Q ss_pred eEEEEcCCCCCC-Ch----HHHHhhhcCCCceee
Q psy11608 56 TCVWVDGVAGKC-GT----GEHNRVNLGYGKSLA 84 (99)
Q Consensus 56 ~~lfVg~l~~~~-s~----~~L~~~F~~fG~i~~ 84 (99)
+.|+|.||++++ .. +.++++|..|+++..
T Consensus 6 ntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~t 39 (104)
T 1wey_A 6 SGLIACVANDDVFSESETRAKFESLFRTYDKDTT 39 (104)
T ss_dssp CEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCE
T ss_pred ceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcc
Confidence 679999999877 33 466999999998854
No 396
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=59.62 E-value=9.8 Score=23.09 Aligned_cols=29 Identities=14% Similarity=0.204 Sum_probs=24.5
Q ss_pred CCCCeEEEEeCCHHHHHHHHHhhCCeEeC
Q psy11608 13 SASAFAFVQYTDIASVVRAMRAMDGEYVG 41 (99)
Q Consensus 13 ~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~ 41 (99)
....-|+|.|.+.+++..=.+.+||..+-
T Consensus 43 ~~~SRaYi~f~~~e~v~~f~~~~~g~~F~ 71 (91)
T 1uw4_A 43 HMYARAYINFKNQEDIILFRDRFDGYVFL 71 (91)
T ss_dssp CCCEEEEEEESSSHHHHHHHHHHTTCEEE
T ss_pred CcceEEEEEeCCHHHHHHHHHHhCCcEEE
Confidence 34456899999999999999999998663
No 397
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=58.64 E-value=12 Score=21.16 Aligned_cols=42 Identities=10% Similarity=0.169 Sum_probs=27.9
Q ss_pred eEEEEEeeCCCCCCeEEEEeCCHHHHHHHHHhhCCeEeCCeEEEEeec
Q psy11608 3 MYFVDIKKQSSASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYG 50 (99)
Q Consensus 3 I~~v~ik~~~~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~ 50 (99)
|-.|+|.. .|.||.-... .|..+++.|++..+.++++++..+
T Consensus 33 IG~I~i~d-----~~s~v~v~~~-~~~~~~~~l~~~~i~g~~~~v~~~ 74 (76)
T 2g0c_A 33 IGIITIMD-----NASYVEILNG-KGPHVLKVMKNTTVKGKQLKVNKA 74 (76)
T ss_dssp EEEEEECS-----SCEEEEECTT-CHHHHHHHHTTCCC---CCCEEEC
T ss_pred ccEEEEeC-----CcEEEEECHH-HHHHHHHHhccccCcCceEEEEEC
Confidence 44556653 6888887654 477899999998888888877644
No 398
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=57.97 E-value=8.7 Score=24.03 Aligned_cols=20 Identities=25% Similarity=0.232 Sum_probs=18.1
Q ss_pred CeEEEEeCCHHHHHHHHHhh
Q psy11608 16 AFAFVQYTDIASVVRAMRAM 35 (99)
Q Consensus 16 gfaFV~F~~~~~a~~Ai~~m 35 (99)
.-|||.|.+++.|..|+..+
T Consensus 50 TsAlvvf~~~~~a~~al~~i 69 (100)
T 1whv_A 50 TSAFVSLSQPEQVQIAVNTS 69 (100)
T ss_dssp TEEEEECSCHHHHHHHHHHH
T ss_pred CeEEEEecCHHHHHHHHHhc
Confidence 46999999999999999976
No 399
>1c9o_A CSPB, cold-shock protein; beta barrel, homodimer, transcription; 1.17A {Bacillus caldolyticus} SCOP: b.40.4.5 PDB: 2hax_A 1hz9_A 1hzb_A 1i5f_A 1hza_A 1hzc_A 3pf4_A 1csq_A 1nmf_A 1nmg_A 1csp_A 2f52_A 2es2_A 3pf5_A 2i5m_X 2i5l_X
Probab=48.11 E-value=10 Score=21.28 Aligned_cols=18 Identities=11% Similarity=0.361 Sum_probs=13.0
Q ss_pred EEeeCCCCCCeEEEEeCC
Q psy11608 7 DIKKQSSASAFAFVQYTD 24 (99)
Q Consensus 7 ~ik~~~~s~gfaFV~F~~ 24 (99)
.||.=+..+|||||+=.+
T Consensus 5 ~Vk~fn~~kGfGFI~~~~ 22 (66)
T 1c9o_A 5 KVKWFNNEKGYGFIEVEG 22 (66)
T ss_dssp EEEEEETTTTEEEEEETT
T ss_pred EEEEEECCCCeEEEecCC
Confidence 345555689999998665
No 400
>3cam_A Cold-shock domain family protein; cold shock protein, chain SWAP, STRU genomics, oxford protein production facility, OPPF, gene RE; 2.60A {Neisseria meningitidis MC58}
Probab=47.66 E-value=11 Score=21.40 Aligned_cols=18 Identities=22% Similarity=0.335 Sum_probs=13.1
Q ss_pred EEeeCCCCCCeEEEEeCC
Q psy11608 7 DIKKQSSASAFAFVQYTD 24 (99)
Q Consensus 7 ~ik~~~~s~gfaFV~F~~ 24 (99)
.||.=+..+|||||+=.+
T Consensus 5 ~Vk~fn~~kGfGFI~~~~ 22 (67)
T 3cam_A 5 IVKWFNDAKGFGFITPDE 22 (67)
T ss_dssp EEEEEETTTTEEEEEETT
T ss_pred EEEEEECCCCeEEEecCC
Confidence 345555789999998665
No 401
>1h95_A CSD, Y-box binding protein; translation factor, transcription factor, OB-fold, 5- stranded anti-parallel beta-barrel, single stranded DNA binding; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=46.18 E-value=11 Score=22.01 Aligned_cols=17 Identities=18% Similarity=0.407 Sum_probs=12.5
Q ss_pred EeeCCCCCCeEEEEeCC
Q psy11608 8 IKKQSSASAFAFVQYTD 24 (99)
Q Consensus 8 ik~~~~s~gfaFV~F~~ 24 (99)
||.=+..+|||||+=.+
T Consensus 13 Vkwfn~~kGfGFI~~~~ 29 (79)
T 1h95_A 13 VKWFNVRNGYGFINRND 29 (79)
T ss_dssp EEEEETTTTEEEEEEGG
T ss_pred EEEEECCCCcEEEecCC
Confidence 45445789999998654
No 402
>2e5q_A PHD finger protein 19; tudor domain, isoform B, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=46.12 E-value=19 Score=20.65 Aligned_cols=19 Identities=32% Similarity=0.438 Sum_probs=13.8
Q ss_pred EeeCCCCCCeEEEEeCCHH
Q psy11608 8 IKKQSSASAFAFVQYTDIA 26 (99)
Q Consensus 8 ik~~~~s~gfaFV~F~~~~ 26 (99)
|++-+..++.|||.|.|..
T Consensus 28 V~kV~~~~~~ClV~FeD~s 46 (63)
T 2e5q_A 28 IKRVSSSKQSCLVTFEDNS 46 (63)
T ss_dssp ECCCCSTTSEEEEEETTSC
T ss_pred EEEEecCCCEEEEEEccCc
Confidence 4444567899999998853
No 403
>2i9x_A Putative septation protein spovg; APC86317.1, staphylococcus epidermidis ATCC 12228, ST genomics, PSI-2, protein structure initiative; 1.80A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=45.12 E-value=19 Score=21.72 Aligned_cols=24 Identities=17% Similarity=0.205 Sum_probs=19.7
Q ss_pred CceEEEEEeeCC---CCCCeEEEEeCC
Q psy11608 1 MVMYFVDIKKQS---SASAFAFVQYTD 24 (99)
Q Consensus 1 ~~I~~v~ik~~~---~s~gfaFV~F~~ 24 (99)
|.|++|.|++-. +=+|||=|+|.+
T Consensus 4 m~iTdVri~~~~~~g~lka~asVt~dd 30 (87)
T 2i9x_A 4 MKVTDVRLRKIQTDGRMKALVSITLDE 30 (87)
T ss_dssp CCEEEEEEEECCSSSSEEEEEEEEETT
T ss_pred cEEEEEEEEEcCCCCCEEEEEEEEECC
Confidence 789999998874 558899999864
No 404
>3a0j_A Cold shock protein; OB-fold, cytoplasm, transcription, structural genomics, NPPSFA; 1.65A {Thermus thermophilus}
Probab=44.97 E-value=12 Score=21.47 Aligned_cols=17 Identities=12% Similarity=0.362 Sum_probs=12.6
Q ss_pred EeeCCCCCCeEEEEeCC
Q psy11608 8 IKKQSSASAFAFVQYTD 24 (99)
Q Consensus 8 ik~~~~s~gfaFV~F~~ 24 (99)
||.=+..+|||||+=.+
T Consensus 6 Vk~fn~~kGfGFI~~~~ 22 (73)
T 3a0j_A 6 VKWFNAEKGYGFIEREG 22 (73)
T ss_dssp EEEEETTTTEEEEECTT
T ss_pred EEEEECCCCEEEEecCC
Confidence 45445689999998665
No 405
>3i2z_B RNA chaperone, negative regulator of CSPA transcription; beta barrel, DNA binding protein/transcription, cytoplasm, gene regulation; 1.10A {Salmonella typhimurium} SCOP: b.40.4.5 PDB: 2l15_A 1mjc_A 3mef_A
Probab=44.62 E-value=13 Score=21.31 Aligned_cols=18 Identities=22% Similarity=0.451 Sum_probs=13.1
Q ss_pred EEeeCCCCCCeEEEEeCC
Q psy11608 7 DIKKQSSASAFAFVQYTD 24 (99)
Q Consensus 7 ~ik~~~~s~gfaFV~F~~ 24 (99)
.||.=+..+|||||.=.+
T Consensus 9 ~Vk~fn~~kGfGFI~~~~ 26 (71)
T 3i2z_B 9 NVKWFNESKGFGFITPED 26 (71)
T ss_dssp EEEEEETTTTEEEEEETT
T ss_pred EEEEEECCCCcEEEecCC
Confidence 345445789999998765
No 406
>3zzp_A TS9, ribosomal protein S6; protein folding, RNA-binding; 0.96A {Thermus thermophilus}
Probab=44.37 E-value=40 Score=19.58 Aligned_cols=62 Identities=6% Similarity=-0.104 Sum_probs=41.1
Q ss_pred eEEEEeCCHHHHHHHHHh---hCCeEeCCeEEEEeecCCCCceEEEEcCCCCCCChHHHHhhhcCCCce
Q psy11608 17 FAFVQYTDIASVVRAMRA---MDGEYVGHNRVNLGYGKSLATTCVWVDGVAGKCGTGEHNRVNLGYGKS 82 (99)
Q Consensus 17 faFV~F~~~~~a~~Ai~~---m~G~~i~~~~i~v~~~k~~~~~~lfVg~l~~~~s~~~L~~~F~~fG~i 82 (99)
|.++.|.-+.++.+-++. +|-..+....+|. .++.+--.+|| |.|+++++..+...++|=.+
T Consensus 7 Yvl~~~~a~~~~i~Eler~~rine~VlR~l~vr~--d~~r~YE~m~I--l~P~l~ee~~~~~vek~~~~ 71 (77)
T 3zzp_A 7 TTWYQVEMPEDRVNDLARELRIRDNVRRVMVVAS--TTPGRYEVNIV--LNPNLDQSQLQNEKEIIQRA 71 (77)
T ss_dssp EEEEEEECCHHHHHHHHHHHHTSTTEEEEEEEEC--SSTTEEEEEEE--ECTTCCHHHHHHHHHHHHHH
T ss_pred EEEEEEEeCHhHHHHHHHHhCCCHHHHHHHHHhc--cCCCceEEEEE--ECCCCCHHHHHHHHHHHHHH
Confidence 789999877766655543 4555554444443 34444455777 56899999999888877544
No 407
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=44.05 E-value=17 Score=21.14 Aligned_cols=19 Identities=42% Similarity=0.518 Sum_probs=13.4
Q ss_pred EeeCCCCCCeEEEEeCCHH
Q psy11608 8 IKKQSSASAFAFVQYTDIA 26 (99)
Q Consensus 8 ik~~~~s~gfaFV~F~~~~ 26 (99)
|++-...++.+||+|.|..
T Consensus 30 V~kV~~~~~~ClV~FeD~s 48 (68)
T 2e5p_A 30 IKKVDSAREVCLVQFEDDS 48 (68)
T ss_dssp EEEEETTTTEEEEEETTTE
T ss_pred EEEEecCCcEEEEEEccCC
Confidence 3444466899999998853
No 408
>1g6p_A Cold shock protein TMCSP; greek-KEY, beta barrel, OB-fold, structural genomics; NMR {Thermotoga maritima} SCOP: b.40.4.5
Probab=43.89 E-value=13 Score=20.86 Aligned_cols=17 Identities=18% Similarity=0.382 Sum_probs=12.3
Q ss_pred EeeCCCCCCeEEEEeCC
Q psy11608 8 IKKQSSASAFAFVQYTD 24 (99)
Q Consensus 8 ik~~~~s~gfaFV~F~~ 24 (99)
||.=+..+|||||.=.+
T Consensus 5 Vk~fn~~kGfGFI~~~~ 21 (66)
T 1g6p_A 5 VKWFDSKKGYGFITKDE 21 (66)
T ss_dssp EEEEETTTTEEEEEETT
T ss_pred EEEEECCCCEEEEecCC
Confidence 44445679999998664
No 409
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*
Probab=41.32 E-value=20 Score=28.70 Aligned_cols=34 Identities=18% Similarity=0.292 Sum_probs=28.6
Q ss_pred ceEEEEEeeCC--CCCCeEEEEeCCHHHHHHHHHhh
Q psy11608 2 VMYFVDIKKQS--SASAFAFVQYTDIASVVRAMRAM 35 (99)
Q Consensus 2 ~I~~v~ik~~~--~s~gfaFV~F~~~~~a~~Ai~~m 35 (99)
+|+++.+|--+ ..+.++++.|.|.++|.+|+.++
T Consensus 373 IITeatLrL~P~P~~~~~~~~~f~d~~~a~~av~~i 408 (658)
T 4bby_A 373 VITEATIKIRPTPEYQKYGSVAFPNFEQGVACLREI 408 (658)
T ss_dssp EEEEEEEECEECCSEEEEEEEEESSHHHHHHHHHHH
T ss_pred ceeeeeeeeccCCccccccccccCCchhhhhhHHHH
Confidence 68999999876 45567899999999999988765
No 410
>2k5n_A Putative cold-shock protein; GFT protein structure, PSI, nesgc, OB fold, cold shock structural genomics; NMR {Pectobacterium atrosepticum}
Probab=41.15 E-value=19 Score=20.83 Aligned_cols=18 Identities=17% Similarity=0.326 Sum_probs=13.2
Q ss_pred EEeeCCCCCCeEEEEeCC
Q psy11608 7 DIKKQSSASAFAFVQYTD 24 (99)
Q Consensus 7 ~ik~~~~s~gfaFV~F~~ 24 (99)
.||.=+..+|||||+=.+
T Consensus 6 ~Vkwfn~~KGfGFI~~~d 23 (74)
T 2k5n_A 6 TITTWFKDKGFGFIKDEN 23 (74)
T ss_dssp EEEEEETTTTEEEEEESS
T ss_pred EEEEEECCCCeEEEecCC
Confidence 355555789999998765
No 411
>2i9z_A Putative septation protein spovg; APC86317, staphylococcus epidermidis ATCC 12228, STRU genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=40.47 E-value=24 Score=22.08 Aligned_cols=24 Identities=17% Similarity=0.205 Sum_probs=19.6
Q ss_pred CceEEEEEeeCC---CCCCeEEEEeCC
Q psy11608 1 MVMYFVDIKKQS---SASAFAFVQYTD 24 (99)
Q Consensus 1 ~~I~~v~ik~~~---~s~gfaFV~F~~ 24 (99)
|.|++|.|++-. +=+|||=|+|.+
T Consensus 4 M~iTdVri~~i~~~gklkA~aSVt~dd 30 (105)
T 2i9z_A 4 MKVTDVRLRKIQTDGRMKALVSITLDE 30 (105)
T ss_dssp CCEEEEEEEECCSCSSEEEEEEEEETT
T ss_pred cEEEEEEEEEeCCCCCEEEEEEEEECC
Confidence 889999998874 558899999864
No 412
>2kjw_A TS9, 30S ribosomal protein S6; S6 permutant, solution structure, backbone dynamics, folding, ribonucleoprotein, RNA-binding, rRNA-binding; NMR {Thermus thermophilus}
Probab=40.42 E-value=32 Score=20.98 Aligned_cols=62 Identities=8% Similarity=-0.093 Sum_probs=42.8
Q ss_pred eEEEEeCCHHHHHHHHHh---hCCeEeCCeEEEEeecCCCCceEEEEcCCCCCCChHHHHhhhcCCCce
Q psy11608 17 FAFVQYTDIASVVRAMRA---MDGEYVGHNRVNLGYGKSLATTCVWVDGVAGKCGTGEHNRVNLGYGKS 82 (99)
Q Consensus 17 faFV~F~~~~~a~~Ai~~---m~G~~i~~~~i~v~~~k~~~~~~lfVg~l~~~~s~~~L~~~F~~fG~i 82 (99)
|.++.|.-+.++.+-++. +|-..+.-..+++.. -..--.+|| |.|+.++++++...++|-.+
T Consensus 7 Y~~~~~~a~~~~v~eler~~r~~e~vlR~l~v~~e~--Mr~YE~m~I--l~P~l~ee~~~~~ve~~~~i 71 (96)
T 2kjw_A 7 FLWYQVEMPEDRVNDLARELRIRDNVRRVMVVASTT--PGRYEVNIV--LNPNLDQSQLALEKEIIQRA 71 (96)
T ss_dssp CEEECCCCCHHHHHHHHHHHHHCTTCSEEEEEECSS--SSCEEEEEE--CCSSCCHHHHHHHHHHHHHH
T ss_pred EEEEEeecChhHHHHHHHHhccchhhhhhhheehhh--hhhhheeee--eCCCCCHHHHHHHHHHHHHH
Confidence 889999998888877754 455555444555542 122345777 78999999998888877433
No 413
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=39.74 E-value=16 Score=23.46 Aligned_cols=31 Identities=6% Similarity=-0.138 Sum_probs=26.7
Q ss_pred ceEEEEcCCCCCCChHHHHhhhcCC-----Cceeee
Q psy11608 55 TTCVWVDGVAGKCGTGEHNRVNLGY-----GKSLAT 85 (99)
Q Consensus 55 ~~~lfVg~l~~~~s~~~L~~~F~~f-----G~i~~~ 85 (99)
.+.|=+=+||..++++.++.+.++| |.+..+
T Consensus 21 ~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI 56 (117)
T 2l9w_A 21 ETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKI 56 (117)
T ss_dssp TSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEE
T ss_pred CcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEE
Confidence 4567777999999999999999999 999543
No 414
>2ia9_A Putative septation protein spovg; APC85465, bacillus subtilis subsp. subtilis STR. 168, structural genomics, PSI-2; 3.00A {Bacillus subtilis} SCOP: d.366.1.1
Probab=39.71 E-value=26 Score=21.76 Aligned_cols=24 Identities=17% Similarity=0.192 Sum_probs=19.7
Q ss_pred CceEEEEEeeCC---CCCCeEEEEeCC
Q psy11608 1 MVMYFVDIKKQS---SASAFAFVQYTD 24 (99)
Q Consensus 1 ~~I~~v~ik~~~---~s~gfaFV~F~~ 24 (99)
|.|++|.|.+-. +=+|||=|+|.+
T Consensus 4 M~ITdVri~~i~~~gklkA~aSVt~dd 30 (100)
T 2ia9_A 4 MEVTDVRLRRVNTDGRMRAIASITLDH 30 (100)
T ss_dssp CCEEEEEEEECCSSSSEEEEEEEEETT
T ss_pred cEEEEEEEEEcCCCCCEEEEEEEEECC
Confidence 789999998874 558899999863
No 415
>1igq_A Transcriptional repressor protein KORB; SH3 domain, dimerization domain; 1.70A {Escherichia coli} SCOP: b.34.1.3 PDB: 1igu_A
Probab=39.48 E-value=14 Score=21.07 Aligned_cols=17 Identities=24% Similarity=0.755 Sum_probs=13.5
Q ss_pred EeeCCCCCCeEEEEeCC
Q psy11608 8 IKKQSSASAFAFVQYTD 24 (99)
Q Consensus 8 ik~~~~s~gfaFV~F~~ 24 (99)
+.|.+.+.|++.|.|+|
T Consensus 26 lnrRps~~G~~wiKyED 42 (62)
T 1igq_A 26 LNRRPPAEGYAWLKYED 42 (62)
T ss_dssp TTBCCSSTTEEEEEETT
T ss_pred hccCCCcCceEEEEEec
Confidence 34445789999999998
No 416
>3p8b_B Transcription antitermination protein NUSG; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus} PDB: 3qqc_D
Probab=39.12 E-value=33 Score=22.02 Aligned_cols=26 Identities=19% Similarity=0.337 Sum_probs=23.1
Q ss_pred CCCCeEEEEeCCHHHHHHHHHhhCCe
Q psy11608 13 SASAFAFVQYTDIASVVRAMRAMDGE 38 (99)
Q Consensus 13 ~s~gfaFV~F~~~~~a~~Ai~~m~G~ 38 (99)
.=+||=||++...++.-.+++.+.|.
T Consensus 41 ~fPGYVfVe~~~~~~~~~~v~~t~gV 66 (152)
T 3p8b_B 41 RVKGYIFVEAPNKGVVDEAIRGIRHA 66 (152)
T ss_dssp TCCSEEEEEESSHHHHHHHHTTCTTE
T ss_pred CCCcEEEEEEEchHHHHHHHhCCCCE
Confidence 46899999999999999999988876
No 417
>3ulj_A LIN28B, DNA-binding protein; beta barrel, cold shock domain fold, nucleic acid binding, D binding protein; 1.06A {Silurana} PDB: 4a4i_A
Probab=38.88 E-value=17 Score=22.00 Aligned_cols=15 Identities=20% Similarity=0.268 Sum_probs=10.6
Q ss_pred EeeCCCCCCeEEEEe
Q psy11608 8 IKKQSSASAFAFVQY 22 (99)
Q Consensus 8 ik~~~~s~gfaFV~F 22 (99)
+|-=+..+|||||+-
T Consensus 13 VKWFn~~KGfGFI~~ 27 (90)
T 3ulj_A 13 CKWFNVRMGFGFISM 27 (90)
T ss_dssp EEEEETTTTEEEEEE
T ss_pred EEEeeCCCCeEEeEe
Confidence 343347899999974
No 418
>2kcm_A Cold shock domain family protein; nucleic acid binding protein, beta barrel, structural genomi 2, protein structure initiative; NMR {Shewanella oneidensis}
Probab=38.54 E-value=22 Score=20.56 Aligned_cols=18 Identities=22% Similarity=0.289 Sum_probs=13.2
Q ss_pred EeeCCCCCCeEEEEeCCH
Q psy11608 8 IKKQSSASAFAFVQYTDI 25 (99)
Q Consensus 8 ik~~~~s~gfaFV~F~~~ 25 (99)
||.=+..+|||||+=.+-
T Consensus 5 Vkwfn~~KGfGFI~~~dG 22 (74)
T 2kcm_A 5 VVSYLAAKKYGFIQGDDG 22 (74)
T ss_dssp EEEEETTTTEEEEEETTS
T ss_pred EEEEECCCCEEEEecCCC
Confidence 454457899999987653
No 419
>2x4i_A CAG38848, uncharacterized protein 114; unknown function, DUF1874, archeal virus; 2.20A {Sulfolobus islandicus rudivirus 1 variorganism_taxid}
Probab=38.16 E-value=44 Score=21.22 Aligned_cols=68 Identities=16% Similarity=0.177 Sum_probs=33.9
Q ss_pred EEEeCCHHHHHHHHHhhCCeEeCCeEEEEeecCCCCceEEEE----cCCCCC--CChHHHHhhhcCCCceeeeeEEEEc
Q psy11608 19 FVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKSLATTCVWV----DGVAGK--CGTGEHNRVNLGYGKSLATTCVWVD 91 (99)
Q Consensus 19 FV~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k~~~~~~lfV----g~l~~~--~s~~~L~~~F~~fG~i~~~~~v~~d 91 (99)
||..--.++...++..+=|..+.-+|+.+.. .+..+++| ..||+. .+.++|+++|++ |.| ....+++|
T Consensus 41 ~iSaIGH~sTA~lls~Llg~~ip~NR~~i~~---~~GD~alv~~L~~Rl~EG~vl~~eEi~k~~e~-g~i-~~~~~~~~ 114 (114)
T 2x4i_A 41 IINSIGHDSTIQLINSLCGTTFQKNRVEIKL---EKEDKLYVVQISQRLEEGKILTLEEILKLYES-GKV-QFFEIIVD 114 (114)
T ss_dssp EEECCCCHHHHHHHHHHHCCCCCCCCCCCCB---CTTCEEEEEEEC-------CCCHHHHHHHHHH-TCE-EEEEEEC-
T ss_pred eEEeeccHHHHHHHHHHhCCCccccceeEEe---cCCCEEEEEEecccCCCCccCCHHHHHHHHHc-Cce-EEEEEeeC
Confidence 4555555555555555555544444433222 12333333 235543 368999999876 777 56677765
No 420
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=36.49 E-value=26 Score=20.23 Aligned_cols=18 Identities=28% Similarity=0.373 Sum_probs=13.4
Q ss_pred EeeCCCCCCeEEEEeCCH
Q psy11608 8 IKKQSSASAFAFVQYTDI 25 (99)
Q Consensus 8 ik~~~~s~gfaFV~F~~~ 25 (99)
|++-+..+|-|+|.|.|.
T Consensus 34 I~~V~~~~gtC~V~F~D~ 51 (66)
T 2eqj_A 34 IKKINILKQSCFIIFEDS 51 (66)
T ss_dssp EEEEETTTTEEEEEETTT
T ss_pred EEEEccCCcEEEEEEccC
Confidence 444456689999999874
No 421
>8tfv_A Protein (thanatin); bactericidal, fungicidal, antimicrobial; NMR {Synthetic} SCOP: j.3.1.2
Probab=36.28 E-value=5.8 Score=17.59 Aligned_cols=13 Identities=23% Similarity=0.675 Sum_probs=9.8
Q ss_pred eEEEEcCCCCCCC
Q psy11608 86 TCVWVDGVAGKCG 98 (99)
Q Consensus 86 ~~v~~d~~~g~~~ 98 (99)
..+..++.||+|.
T Consensus 7 piiycnrrtgkcq 19 (21)
T 8tfv_A 7 PIIYCNRRTGKCQ 19 (26)
T ss_dssp CCEEEEGGGTEEE
T ss_pred cEEEEcCccccee
Confidence 3456789999994
No 422
>3aqq_A Calcium-regulated heat stable protein 1; compact beta-barrel, cold shock domain, ssDNA binding, DNA B protein; 2.80A {Homo sapiens}
Probab=35.93 E-value=23 Score=23.40 Aligned_cols=19 Identities=16% Similarity=0.065 Sum_probs=14.0
Q ss_pred EEeeCCCCCCeEEEEeCCH
Q psy11608 7 DIKKQSSASAFAFVQYTDI 25 (99)
Q Consensus 7 ~ik~~~~s~gfaFV~F~~~ 25 (99)
.||.=+..+|||||+-.+-
T Consensus 66 tVKwFn~~KGfGFI~~ddG 84 (147)
T 3aqq_A 66 VCKCFCRSKGHGFITPADG 84 (147)
T ss_dssp EEEEEETTTTEEEEEESSS
T ss_pred EEEEEeCCCCeEEeccCCC
Confidence 3555457899999998763
No 423
>2ki0_A DS119; beta-alpha-beta, de novo protein; NMR {Synthetic}
Probab=35.87 E-value=8.3 Score=19.21 Aligned_cols=11 Identities=27% Similarity=0.794 Sum_probs=8.0
Q ss_pred ceEEEEcCCCC
Q psy11608 55 TTCVWVDGVAG 65 (99)
Q Consensus 55 ~~~lfVg~l~~ 65 (99)
.+.|||||-|+
T Consensus 5 vrtiwvggtpe 15 (36)
T 2ki0_A 5 VRTIWVGGTPE 15 (36)
T ss_dssp CCCCCBCCCHH
T ss_pred eEEEEecCCHH
Confidence 46799999543
No 424
>1id0_A PHOQ histidine kinase; PHOQ/PHOP, signal transduction, transferase; HET: ANP; 1.60A {Escherichia coli} SCOP: d.122.1.3 PDB: 3cgz_A 3cgy_A
Probab=35.46 E-value=63 Score=19.35 Aligned_cols=39 Identities=5% Similarity=-0.096 Sum_probs=26.5
Q ss_pred EEEEeecCCCCceEEEEcCCCCCCChHHHHhhhcCCCce
Q psy11608 44 RVNLGYGKSLATTCVWVDGVAGKCGTGEHNRVNLGYGKS 82 (99)
Q Consensus 44 ~i~v~~~k~~~~~~lfVg~l~~~~s~~~L~~~F~~fG~i 82 (99)
.|.+........-.|.|.+=-+.++++++.++|++|-..
T Consensus 63 ~i~i~~~~~~~~~~i~i~D~G~gi~~~~~~~~f~~~~~~ 101 (152)
T 1id0_A 63 FVEISARQTDEHLYIVVEDDGPGIPLSKREVIFDRGQRV 101 (152)
T ss_dssp EEEEEEEECSSCEEEEEEESSSCCCGGGTTGGGSCCCCT
T ss_pred eEEEEEEecCCEEEEEEEeCCCCcCHHHHHHHhccceec
Confidence 555544333334567887777788899999999987543
No 425
>1x60_A Sporulation-specific N-acetylmuramoyl-L-alanine amidase; CWLC, CWLCR, peptidoglycan, cell WALL lytic amidase, tandem repeats, hydrolase; NMR {Bacillus subtilis}
Probab=32.37 E-value=14 Score=20.93 Aligned_cols=52 Identities=6% Similarity=-0.128 Sum_probs=31.8
Q ss_pred EeCCHHHHHHHHHhhCCeEeCCeEEEEeecCCCCceEEEEcCCCCCCChHHHHhhhc
Q psy11608 21 QYTDIASVVRAMRAMDGEYVGHNRVNLGYGKSLATTCVWVDGVAGKCGTGEHNRVNL 77 (99)
Q Consensus 21 ~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k~~~~~~lfVg~l~~~~s~~~L~~~F~ 77 (99)
.|.+.+.|++....|... |.+..+..+ ..-.+|+||.++..-.-+.+.+...
T Consensus 16 af~~~~~A~~~~~~L~~~---g~~~~i~~~--~~~yRV~vGpf~~~~~A~~~~~~L~ 67 (79)
T 1x60_A 16 AFKVKANADSLASNAEAK---GFDSIVLLK--DGLYKVQIGAFSSKDNADTLAARAK 67 (79)
T ss_dssp EESCHHHHHHHHHHHHHH---TCCEEEEEE--TTEEEEEEEEESSHHHHHHHHHHHH
T ss_pred EcCCHHHHHHHHHHHHhC---CCCeEEecC--CcEEEEEECCcCCHHHHHHHHHHHH
Confidence 399999999988877543 222233222 2458999998765444444444443
No 426
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=31.76 E-value=34 Score=20.40 Aligned_cols=15 Identities=33% Similarity=0.459 Sum_probs=11.8
Q ss_pred CCCCCeEEEEeCCHH
Q psy11608 12 SSASAFAFVQYTDIA 26 (99)
Q Consensus 12 ~~s~gfaFV~F~~~~ 26 (99)
...++.++|.|.|..
T Consensus 51 ~~~~e~ClV~F~D~S 65 (79)
T 2m0o_A 51 DSAREVCLVQFEDDS 65 (79)
T ss_dssp ETTTTEEEEEETTSC
T ss_pred ccCCCEEEEEEcCCC
Confidence 356889999999853
No 427
>2ytx_A Cold shock domain-containing protein E1; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold; NMR {Homo sapiens}
Probab=29.31 E-value=24 Score=21.40 Aligned_cols=11 Identities=36% Similarity=0.706 Sum_probs=9.0
Q ss_pred CCCeEEEEeCC
Q psy11608 14 ASAFAFVQYTD 24 (99)
Q Consensus 14 s~gfaFV~F~~ 24 (99)
.+|||||+=.+
T Consensus 27 ~KGfGFI~~dd 37 (97)
T 2ytx_A 27 KEAFGFIERGD 37 (97)
T ss_dssp CSSEEEEECSS
T ss_pred eCCceEEecCC
Confidence 68999998654
No 428
>2lss_A Cold shock-like protein; CSD, CSP, oligonucleotide binding F fold, RNA binding protein, DNA binding protein; NMR {Rickettsia rickettsii}
Probab=35.14 E-value=12 Score=21.38 Aligned_cols=17 Identities=24% Similarity=0.479 Sum_probs=11.9
Q ss_pred EeeCCCCCCeEEEEeCC
Q psy11608 8 IKKQSSASAFAFVQYTD 24 (99)
Q Consensus 8 ik~~~~s~gfaFV~F~~ 24 (99)
||.=+..+|||||+=.+
T Consensus 9 Vk~fn~~kGfGFI~~~~ 25 (70)
T 2lss_A 9 VKWYNSTKNFGFIEQDN 25 (70)
Confidence 33334678999998665
No 429
>2yty_A Cold shock domain-containing protein E1; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold; NMR {Homo sapiens}
Probab=28.76 E-value=24 Score=21.09 Aligned_cols=10 Identities=20% Similarity=0.680 Sum_probs=8.4
Q ss_pred CCeEEEEeCC
Q psy11608 15 SAFAFVQYTD 24 (99)
Q Consensus 15 ~gfaFV~F~~ 24 (99)
+|||||+=.+
T Consensus 28 kGfGFI~~dd 37 (88)
T 2yty_A 28 DNFGFIETAN 37 (88)
T ss_dssp SSEEEEECSS
T ss_pred CCccEEecCC
Confidence 7999999765
No 430
>2r7k_A 5-formaminoimidazole-4-carboxamide-1-(beta)-D- ribofuranosyl 5'-monophosphate synthetase...; ATP-grAsp superfamily, ATP-binding; HET: ACP AMZ; 2.10A {Methanocaldococcus jannaschii} SCOP: c.30.1.8 d.142.1.9 PDB: 2r7l_A* 2r7m_A* 2r7n_A*
Probab=28.56 E-value=77 Score=23.33 Aligned_cols=30 Identities=7% Similarity=0.088 Sum_probs=22.3
Q ss_pred EEEeeCCCCCCeEEEEeCCHHHHHHHHHhh
Q psy11608 6 VDIKKQSSASAFAFVQYTDIASVVRAMRAM 35 (99)
Q Consensus 6 v~ik~~~~s~gfaFV~F~~~~~a~~Ai~~m 35 (99)
|+||-++.+.|-|...-.+.++++.|++.+
T Consensus 153 vVVK~~~~a~GkGv~v~~s~ee~~~a~~~~ 182 (361)
T 2r7k_A 153 VIVKFPGARGGRGYFIASSTEEFYKKAEDL 182 (361)
T ss_dssp EEEECSCCCC---EEEESSHHHHHHHHHHH
T ss_pred EEEeeCCCCCCCCEEEECCHHHHHHHHHHH
Confidence 788988866777777778999999998665
No 431
>3g4p_A Beta-lactamase OXA-24; B-lactamases, enzyme mechanism, carbapenem, resistance, HYDR; HET: KCX; 1.97A {Acinetobacter baumannii} PDB: 2jc7_A* 3fyz_A* 3fzc_A* 3fv7_A* 3mbz_A* 3pae_A* 3pag_A*
Probab=28.55 E-value=9.9 Score=26.79 Aligned_cols=27 Identities=4% Similarity=-0.195 Sum_probs=21.6
Q ss_pred ChHHHHhhhcCCCceeeeeEEEEcCCCCC
Q psy11608 68 GTGEHNRVNLGYGKSLATTCVWVDGVAGK 96 (99)
Q Consensus 68 s~~~L~~~F~~fG~i~~~~~v~~d~~~g~ 96 (99)
++++|+++|+.+|. +-+.|++|..||.
T Consensus 7 ~~~~~~~~f~~~~~--~Ga~Vv~d~~tG~ 33 (244)
T 3g4p_A 7 HEKAIKSYFDEAQT--QGVIIIKEGKNLS 33 (244)
T ss_dssp HHHHHHHHHHHTTC--CEEEEEEETTEEE
T ss_pred cHHHHHHHHhhcCC--eEEEEEEECCCCC
Confidence 46889999998874 4567889999875
No 432
>1uta_A FTSN, MSGA, cell division protein FTSN; bacterial cell division protein, RNP domain, transmembrane, inner membrane, repeat; NMR {Escherichia coli} SCOP: d.58.52.1
Probab=27.95 E-value=45 Score=18.85 Aligned_cols=53 Identities=9% Similarity=-0.066 Sum_probs=32.2
Q ss_pred EeCCHHHHHHHHHhhCCeEeCCeEEEEeecCCCCceEEEEcCCCCCCChHHHHhhhcC
Q psy11608 21 QYTDIASVVRAMRAMDGEYVGHNRVNLGYGKSLATTCVWVDGVAGKCGTGEHNRVNLG 78 (99)
Q Consensus 21 ~F~~~~~a~~Ai~~m~G~~i~~~~i~v~~~k~~~~~~lfVg~l~~~~s~~~L~~~F~~ 78 (99)
-|.+.+.|++....|... +.+..+.. ...-.+|+||.++..-.-+.+.+....
T Consensus 16 aF~~~~~A~~l~~~L~~~---G~~a~i~~--~~~~yRV~vGpf~s~~~A~~~~~~L~~ 68 (81)
T 1uta_A 16 SFRGAEQAETVRAQLAFE---GFDSKITT--NNGWNRVVIGPVKGKENADSTLNRLKM 68 (81)
T ss_dssp EESCHHHHHHHHHHHHHH---TCCEEEEE--CSSSEEEEESSCBTTTHHHHHHHHHHH
T ss_pred EcCCHHHHHHHHHHHHhC---CCCeEEEe--CCcEEEEEECCcCCHHHHHHHHHHHHH
Confidence 589999999988776432 11223332 223579999988665554444444443
No 433
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=27.76 E-value=78 Score=19.47 Aligned_cols=29 Identities=10% Similarity=0.213 Sum_probs=24.4
Q ss_pred CCCCCeEEEEeCCHHHHHHHHHhhCCeEe
Q psy11608 12 SSASAFAFVQYTDIASVVRAMRAMDGEYV 40 (99)
Q Consensus 12 ~~s~gfaFV~F~~~~~a~~Ai~~m~G~~i 40 (99)
+.-+||=||+=.+..+..+|++.+.+...
T Consensus 48 ~~lkGyIyVEA~~~~~V~~ai~gi~~v~~ 76 (106)
T 3h7h_B 48 EHVKGYIYVEAYKQTHVKQAIEGVGNLRL 76 (106)
T ss_dssp TTCCSEEEEEESSHHHHHHHHTTCGGGGG
T ss_pred CCCceEEEEEeCCHHHHHHHHhcccceec
Confidence 46799999999999999999988765543
No 434
>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=27.70 E-value=34 Score=19.17 Aligned_cols=17 Identities=24% Similarity=0.222 Sum_probs=13.8
Q ss_pred CCCCCCChHHHHhhhcC
Q psy11608 62 GVAGKCGTGEHNRVNLG 78 (99)
Q Consensus 62 ~l~~~~s~~~L~~~F~~ 78 (99)
||+++.|.++|++.|.+
T Consensus 10 gv~~~as~~~Ik~ayr~ 26 (77)
T 1hdj_A 10 GLARGASDEEIKRAYRR 26 (77)
T ss_dssp TCCTTCCHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHH
Confidence 68888999999888754
No 435
>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A
Probab=27.37 E-value=35 Score=18.94 Aligned_cols=17 Identities=18% Similarity=0.206 Sum_probs=14.3
Q ss_pred CCCCCCChHHHHhhhcC
Q psy11608 62 GVAGKCGTGEHNRVNLG 78 (99)
Q Consensus 62 ~l~~~~s~~~L~~~F~~ 78 (99)
||+++.+.++|++.|.+
T Consensus 15 gl~~~a~~~eIk~ayr~ 31 (73)
T 2och_A 15 GVKPDASDNELKKAYRK 31 (73)
T ss_dssp TCCTTCCHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHH
Confidence 68899999999988753
No 436
>4aj5_1 SKA3, spindle and kinetochore-associated protein 3; cell cycle, SKA complex, mitosis, cell division, kinetochore microtubule attachment; 3.32A {Homo sapiens}
Probab=27.05 E-value=15 Score=22.92 Aligned_cols=12 Identities=17% Similarity=0.088 Sum_probs=8.1
Q ss_pred hHHHHhhhcCCC
Q psy11608 69 TGEHNRVNLGYG 80 (99)
Q Consensus 69 ~~~L~~~F~~fG 80 (99)
-..|+++|++||
T Consensus 90 I~~ire~fqKYG 101 (101)
T 4aj5_1 90 IMKIREYFQKYG 101 (101)
T ss_dssp HHHHHHHHHHC-
T ss_pred HHHHHHHHHHcC
Confidence 456788888887
No 437
>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.05 E-value=35 Score=19.16 Aligned_cols=17 Identities=18% Similarity=0.247 Sum_probs=14.5
Q ss_pred CCCCCCChHHHHhhhcC
Q psy11608 62 GVAGKCGTGEHNRVNLG 78 (99)
Q Consensus 62 ~l~~~~s~~~L~~~F~~ 78 (99)
||+++++.++|++.|.+
T Consensus 14 gv~~~a~~~~Ik~ayr~ 30 (79)
T 2dn9_A 14 GVPRNASQKEIKKAYYQ 30 (79)
T ss_dssp TCCTTCCHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHH
Confidence 68899999999988854
No 438
>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.94 E-value=36 Score=19.13 Aligned_cols=17 Identities=12% Similarity=0.177 Sum_probs=14.3
Q ss_pred CCCCCCChHHHHhhhcC
Q psy11608 62 GVAGKCGTGEHNRVNLG 78 (99)
Q Consensus 62 ~l~~~~s~~~L~~~F~~ 78 (99)
||+++.+.++|++.|.+
T Consensus 14 gv~~~as~~eIk~ayr~ 30 (78)
T 2ctp_A 14 GVSRGASDEDLKKAYRR 30 (78)
T ss_dssp TCCTTCCHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHH
Confidence 68899999999988853
No 439
>3a0y_A Sensor protein; ATP-LID, kinase, phosphoprotein, transferase, two-component regulatory system; 1.57A {Thermotoga maritima} PDB: 3a0t_A* 3a0x_A 3a0w_A 3a0z_A
Probab=26.61 E-value=94 Score=18.40 Aligned_cols=39 Identities=5% Similarity=-0.051 Sum_probs=25.5
Q ss_pred eEEEEeecCCCCceEEEEcCCCCCCChHHHHhhhcCCCc
Q psy11608 43 NRVNLGYGKSLATTCVWVDGVAGKCGTGEHNRVNLGYGK 81 (99)
Q Consensus 43 ~~i~v~~~k~~~~~~lfVg~l~~~~s~~~L~~~F~~fG~ 81 (99)
..|.+........-.|.|.+=.+.++++++.++|++|-.
T Consensus 67 ~~I~i~~~~~~~~~~i~i~D~G~g~~~~~~~~~f~~~~~ 105 (152)
T 3a0y_A 67 GKIKITSEDMYTKVRVSVWNSGPPIPEELKEKIFSPFFT 105 (152)
T ss_dssp CEEEEEEEECSSEEEEEEEEESCCCCGGGTTGGGSTTCC
T ss_pred CEEEEEEEecCCEEEEEEEeCCCCcCHHHHHhHhhhhcc
Confidence 355554433333445777666667888999999998854
No 440
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=26.46 E-value=34 Score=22.28 Aligned_cols=17 Identities=24% Similarity=0.255 Sum_probs=12.4
Q ss_pred EeeCCCCCCeEEEEeCC
Q psy11608 8 IKKQSSASAFAFVQYTD 24 (99)
Q Consensus 8 ik~~~~s~gfaFV~F~~ 24 (99)
||.=+..+|||||.-.+
T Consensus 14 Vkwfn~~kGfGFI~~~~ 30 (148)
T 3ts2_A 14 CKWFNVRMGFGFLSMTA 30 (148)
T ss_dssp EEEEETTTTEEEEEEEE
T ss_pred EEEEECCCCeeEEeeCc
Confidence 44445789999999863
No 441
>1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; 2.30A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1
Probab=26.08 E-value=11 Score=29.75 Aligned_cols=70 Identities=11% Similarity=0.013 Sum_probs=49.9
Q ss_pred eEEEEEeeCCCCCCeEEEEeCCHHH-HHH-HHHhh--CCeEeCCeEEEEeecCCCCceEEEEcCCCCCCChHHHHhhhcC
Q psy11608 3 MYFVDIKKQSSASAFAFVQYTDIAS-VVR-AMRAM--DGEYVGHNRVNLGYGKSLATTCVWVDGVAGKCGTGEHNRVNLG 78 (99)
Q Consensus 3 I~~v~ik~~~~s~gfaFV~F~~~~~-a~~-Ai~~m--~G~~i~~~~i~v~~~k~~~~~~lfVg~l~~~~s~~~L~~~F~~ 78 (99)
|.+|.+- | |||.|.=..+ ... .++.+ .|...| ++.|.|..+.++..+.||++=..+--+-|.++++.
T Consensus 68 ~~~~~~~------g-gfiN~~l~~~~~~~~~~~~~~~~~~~~g--~v~ve~~spn~~~~~HiGH~R~~iigD~laR~l~~ 138 (592)
T 1iq0_A 68 VEEAVPV------G-GYLNFRLRTEALLREALRPKAPFPRRPG--VVLVEHTSVNPNKELHVGHLRNIALGDAIARILAY 138 (592)
T ss_dssp EEEEEEE------T-TEEEEEECHHHHHHHHHSCCCCCCCEEE--EEEEECCCCCTTSCCBHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEc------C-CEEEEEECHHHHHHHHHHHHHhcCcccC--eEEEEeeCCCCCCCCcchHHHHHHHHHHHHHHHHH
Confidence 4555554 6 8999876655 333 33332 344444 78899998888888999998778888888888888
Q ss_pred CCc
Q psy11608 79 YGK 81 (99)
Q Consensus 79 fG~ 81 (99)
-|-
T Consensus 139 ~G~ 141 (592)
T 1iq0_A 139 AGR 141 (592)
T ss_dssp TTE
T ss_pred cCC
Confidence 874
No 442
>3pm9_A Putative oxidoreductase; putative D-2-hydroxyglutarate dehydrogenase, putative D-LACT dehydrogenase; HET: FAD; 2.57A {Rhodopseudomonas palustris}
Probab=25.28 E-value=56 Score=25.05 Aligned_cols=34 Identities=15% Similarity=0.160 Sum_probs=27.6
Q ss_pred ceEEEEEeeCCC--CCCeEEEEeCCHHHHHHHHHhh
Q psy11608 2 VMYFVDIKKQSS--ASAFAFVQYTDIASVVRAMRAM 35 (99)
Q Consensus 2 ~I~~v~ik~~~~--s~gfaFV~F~~~~~a~~Ai~~m 35 (99)
+|+++.+|-.+. ....+++.|.+.++|.+|+.++
T Consensus 216 IIt~~tl~l~p~p~~~~~~~~~~~~~~~a~~~~~~~ 251 (476)
T 3pm9_A 216 IITAATLKLFPKPRAVETAFVGLQSPDDALKLLGIA 251 (476)
T ss_dssp EEEEEEEECEECCSEEEEEEEEESCHHHHHHHHHHH
T ss_pred EEEEEEEEEeecCceeEEEEEEcCCHHHHHHHHHHH
Confidence 688999987764 4456899999999999988765
No 443
>3eye_A PTS system N-acetylgalactosamine-specific IIB component 1; structural genomics, phosphotransferase, PSI-2, protein structure initiative; 1.45A {Escherichia coli O157} SCOP: c.38.1.0
Probab=25.15 E-value=1.5e+02 Score=19.62 Aligned_cols=21 Identities=10% Similarity=0.099 Sum_probs=17.6
Q ss_pred CCCeEEEEeCCHHHHHHHHHh
Q psy11608 14 ASAFAFVQYTDIASVVRAMRA 34 (99)
Q Consensus 14 s~gfaFV~F~~~~~a~~Ai~~ 34 (99)
+..-.||-|.++++|.+.++.
T Consensus 80 ~~~~v~il~k~p~d~~~lve~ 100 (168)
T 3eye_A 80 PHQKIFLICRTPQTVRKLVEG 100 (168)
T ss_dssp TTCCEEEEESSHHHHHHHHHT
T ss_pred CCceEEEEECCHHHHHHHHHc
Confidence 444579999999999999874
No 444
>4a4j_A Pacszia, cation-transporting ATPase PACS; hydrolase, copper homeostasis, zinc homeostasis, ATX1, metal-transporting atpases; 1.25A {Synechocystis} PDB: 4a48_A 2gcf_A 2xmw_A
Probab=24.54 E-value=81 Score=16.18 Aligned_cols=46 Identities=15% Similarity=0.123 Sum_probs=30.4
Q ss_pred HHHHHHHhhCCeEeCCeEEEEeecCCCCceEEEEcCCCCCCChHHHHhhhcCCCc
Q psy11608 27 SVVRAMRAMDGEYVGHNRVNLGYGKSLATTCVWVDGVAGKCGTGEHNRVNLGYGK 81 (99)
Q Consensus 27 ~a~~Ai~~m~G~~i~~~~i~v~~~k~~~~~~lfVg~l~~~~s~~~L~~~F~~fG~ 81 (99)
..++|+..++|. ..+.+++. +.++.|.- +..++.++|.+..+..|-
T Consensus 19 ~i~~~l~~~~gv----~~~~v~~~----~~~~~v~~-~~~~~~~~i~~~i~~~Gy 64 (69)
T 4a4j_A 19 SIERAIAKVPGV----QSCQVNFA----LEQAVVSY-HGETTPQILTDAVERAGY 64 (69)
T ss_dssp HHHHHHHTSTTE----EEEEEETT----TTEEEEEE-CTTCCHHHHHHHHHHTTC
T ss_pred HHHHHHhcCCCe----EEEEEEec----CCEEEEEE-CCCCCHHHHHHHHHHcCC
Confidence 345677777765 33555543 35566654 677889999998887773
No 445
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=23.79 E-value=77 Score=19.70 Aligned_cols=20 Identities=10% Similarity=0.252 Sum_probs=17.7
Q ss_pred CeEEEEeCCHHHHHHHHHhh
Q psy11608 16 AFAFVQYTDIASVVRAMRAM 35 (99)
Q Consensus 16 gfaFV~F~~~~~a~~Ai~~m 35 (99)
|-|.+.|.+.++.+.|++.+
T Consensus 47 gqamirfqnsdeqrlaiqkl 66 (129)
T 4eyt_A 47 GQAMIRFQNSDEQRLAIQKL 66 (129)
T ss_dssp SCEEEEESSHHHHHHHHHHH
T ss_pred CeeEEEecCChHHHHHHHHH
Confidence 66889999999999999875
No 446
>2exu_A Transcription initiation protein SPT4/SPT5; helixs surrounding beta sheet; 2.23A {Saccharomyces cerevisiae}
Probab=23.54 E-value=86 Score=21.60 Aligned_cols=29 Identities=3% Similarity=0.166 Sum_probs=25.3
Q ss_pred CCCCeEEEEeCCHHHHHHHHHhhCCeEeC
Q psy11608 13 SASAFAFVQYTDIASVVRAMRAMDGEYVG 41 (99)
Q Consensus 13 ~s~gfaFV~F~~~~~a~~Ai~~m~G~~i~ 41 (99)
.=+||=||+=.+..+..+|++.+.+.+..
T Consensus 147 ~lkGYIyVEA~~~~~V~~ai~Gi~~vy~~ 175 (200)
T 2exu_A 147 NYTGRIYIEAPKQSVIEKFCNGVPDIYIS 175 (200)
T ss_dssp TSTTEEEEECSCHHHHHHHHTTCTTEEEE
T ss_pred CCcEEEEEEECCHHHHHHHHhhhhhhhcC
Confidence 46899999999999999999999887554
No 447
>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.54 E-value=45 Score=18.84 Aligned_cols=17 Identities=6% Similarity=0.053 Sum_probs=14.4
Q ss_pred CCCCCCChHHHHhhhcC
Q psy11608 62 GVAGKCGTGEHNRVNLG 78 (99)
Q Consensus 62 ~l~~~~s~~~L~~~F~~ 78 (99)
||+++.+.++|++.|.+
T Consensus 16 gv~~~as~~eIk~ayr~ 32 (82)
T 2ej7_A 16 DVPRQASSEAIKKAYRK 32 (82)
T ss_dssp TCCTTCCHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHH
Confidence 68899999999988754
No 448
>1nz8_A Transcription antitermination protein NUSG; transcription elongation, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: d.58.42.1
Probab=23.51 E-value=1.3e+02 Score=18.24 Aligned_cols=49 Identities=12% Similarity=0.047 Sum_probs=34.3
Q ss_pred CCCeEEEEeCCHH-----HHHHHHHhhCCeEeCCeEEEEeecCCCCceEEEEcCCCCCCChHHHHhhhcC
Q psy11608 14 ASAFAFVQYTDIA-----SVVRAMRAMDGEYVGHNRVNLGYGKSLATTCVWVDGVAGKCGTGEHNRVNLG 78 (99)
Q Consensus 14 s~gfaFV~F~~~~-----~a~~Ai~~m~G~~i~~~~i~v~~~k~~~~~~lfVg~l~~~~s~~~L~~~F~~ 78 (99)
=+||-||++.-.+ ++-..++...|.. ++=. . |+-|..+++++++.+..+
T Consensus 61 fPGYVFV~~~~~~~~~~~~~~~~vr~t~gV~--------gfvg---~-----g~~P~pi~~~ev~~i~~~ 114 (119)
T 1nz8_A 61 FPGYLFIQMDLGDEEEPNEAWEVVRGTPGIT--------GFVG---A-----GMRPVPLSPDEVRHILEV 114 (119)
T ss_dssp STTEEEEEECCCSSSSCCHHHHHHHHSTTCC--------CCCC---S-----SSSSCBCCHHHHHHHHHH
T ss_pred CCCEEEEEeeccccccchhHHHHHHcCCCce--------EEeC---C-----CCEEeECCHHHHHHHHHH
Confidence 6899999999887 7888888877742 1100 0 345777888888877654
No 449
>2ytv_A Cold shock domain-containing protein E1; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold; NMR {Homo sapiens}
Probab=23.41 E-value=25 Score=20.52 Aligned_cols=12 Identities=25% Similarity=0.515 Sum_probs=9.5
Q ss_pred CCCeEEEEeCCH
Q psy11608 14 ASAFAFVQYTDI 25 (99)
Q Consensus 14 s~gfaFV~F~~~ 25 (99)
.+|||||+-.+-
T Consensus 17 ~KGfGFI~~ddg 28 (79)
T 2ytv_A 17 KDQFGFINYEVG 28 (79)
T ss_dssp CSSEEEESCCCS
T ss_pred cccceeEeCCCC
Confidence 489999987753
No 450
>1ik9_C DNA ligase IV; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens}
Probab=23.08 E-value=44 Score=16.77 Aligned_cols=16 Identities=13% Similarity=-0.058 Sum_probs=13.0
Q ss_pred CCCCCChHHHHhhhcC
Q psy11608 63 VAGKCGTGEHNRVNLG 78 (99)
Q Consensus 63 l~~~~s~~~L~~~F~~ 78 (99)
...+++.++|+.+|.+
T Consensus 18 Y~rd~t~~eLk~il~~ 33 (37)
T 1ik9_C 18 YFIDTDLNQLKEVFSG 33 (37)
T ss_dssp SSSCCCHHHHHHHHHT
T ss_pred ccCcCCHHHHHHHHHH
Confidence 4567899999999875
No 451
>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.49 E-value=48 Score=19.16 Aligned_cols=17 Identities=12% Similarity=0.122 Sum_probs=14.1
Q ss_pred CCCCCCChHHHHhhhcC
Q psy11608 62 GVAGKCGTGEHNRVNLG 78 (99)
Q Consensus 62 ~l~~~~s~~~L~~~F~~ 78 (99)
||+++.+.++|++.|.+
T Consensus 14 gv~~~as~~eIk~ayr~ 30 (88)
T 2ctr_A 14 GVPKSASERQIKKAFHK 30 (88)
T ss_dssp TCCTTCCHHHHHHHHHH
T ss_pred CcCCCCCHHHHHHHHHH
Confidence 68899999999988753
No 452
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=22.48 E-value=66 Score=18.01 Aligned_cols=14 Identities=36% Similarity=0.480 Sum_probs=10.9
Q ss_pred CCCCeEEEEeCCHH
Q psy11608 13 SASAFAFVQYTDIA 26 (99)
Q Consensus 13 ~s~gfaFV~F~~~~ 26 (99)
..++.++|.|.|..
T Consensus 29 ~~~~~clV~F~D~s 42 (58)
T 4hcz_A 29 SAREVCLVQFEDDS 42 (58)
T ss_dssp TTTTEEEEEETTSC
T ss_pred cCCCEEEEEEcCCC
Confidence 56678999998753
No 453
>1x65_A UNR protein; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold, greek-KEY topology protein; NMR {Homo sapiens}
Probab=22.31 E-value=32 Score=20.62 Aligned_cols=10 Identities=30% Similarity=0.810 Sum_probs=8.8
Q ss_pred CCeEEEEeCC
Q psy11608 15 SAFAFVQYTD 24 (99)
Q Consensus 15 ~gfaFV~F~~ 24 (99)
+|||||+-.+
T Consensus 18 KGfGFI~~~~ 27 (89)
T 1x65_A 18 DGFGFIKCVD 27 (89)
T ss_dssp TTBCEEEESS
T ss_pred CCcceeecCC
Confidence 8999999865
No 454
>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus}
Probab=21.62 E-value=51 Score=19.03 Aligned_cols=18 Identities=11% Similarity=0.134 Sum_probs=15.0
Q ss_pred cCCCCCCChHHHHhhhcC
Q psy11608 61 DGVAGKCGTGEHNRVNLG 78 (99)
Q Consensus 61 g~l~~~~s~~~L~~~F~~ 78 (99)
=||+++.+.++|++.|.+
T Consensus 23 Lgv~~~as~~eIk~ayr~ 40 (88)
T 2cug_A 23 LGVSRTASQADIKKAYKK 40 (88)
T ss_dssp HTCCTTCCHHHHHHHHHH
T ss_pred cCcCCCCCHHHHHHHHHH
Confidence 368999999999998854
No 455
>3hbr_A OXA-48; class D beta-lactamase, antibiotic, dimer, hydrolase; HET: KCX; 1.90A {Klebsiella pneumoniae}
Probab=21.42 E-value=43 Score=23.77 Aligned_cols=27 Identities=7% Similarity=-0.134 Sum_probs=22.1
Q ss_pred ChHHHHhhhcCCCceeeeeEEEEcCCCCC
Q psy11608 68 GTGEHNRVNLGYGKSLATTCVWVDGVAGK 96 (99)
Q Consensus 68 s~~~L~~~F~~fG~i~~~~~v~~d~~~g~ 96 (99)
..++|+++|+.+|. +-+.|++|..||.
T Consensus 27 e~~~l~~~f~~~~~--~G~~V~~d~~tG~ 53 (265)
T 3hbr_A 27 ENKSWNAHFTEHKS--QGVVVLWNENKQQ 53 (265)
T ss_dssp ECGGGHHHHHTTTC--CEEEEEEETTTTE
T ss_pred hHHHHHHHHHhcCC--cEEEEEEECCCCC
Confidence 46789999999996 3568889999985
No 456
>1wfq_A UNR protein; beta-barrel, translational regulation, RNA chaperone, RNA/DN binding, QB fold, greek-KEY topology, structur genomics; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=21.17 E-value=50 Score=19.66 Aligned_cols=10 Identities=20% Similarity=0.823 Sum_probs=8.5
Q ss_pred CCeEEEEeCC
Q psy11608 15 SAFAFVQYTD 24 (99)
Q Consensus 15 ~gfaFV~F~~ 24 (99)
+|||||+=.+
T Consensus 28 KGfGFI~~dd 37 (89)
T 1wfq_A 28 TSYGFIQCSE 37 (89)
T ss_dssp SSEEEEEETT
T ss_pred CCeeEEecCC
Confidence 8999998765
No 457
>3d36_A Sporulation kinase B; GHKL ATPase, four helix bundle, class I two-component histidine kinase, phosphoprotein; HET: ADP; 2.03A {Geobacillus stearothermophilus}
Probab=20.97 E-value=1.7e+02 Score=18.66 Aligned_cols=40 Identities=5% Similarity=-0.028 Sum_probs=27.4
Q ss_pred CeEEEEeecCCCCceEEEEcCCCCCCChHHHHhhhcCCCc
Q psy11608 42 HNRVNLGYGKSLATTCVWVDGVAGKCGTGEHNRVNLGYGK 81 (99)
Q Consensus 42 ~~~i~v~~~k~~~~~~lfVg~l~~~~s~~~L~~~F~~fG~ 81 (99)
+..|.|........-.|.|.+=-+.++++++.++|++|-.
T Consensus 142 ~~~i~i~~~~~~~~~~i~i~D~G~gi~~~~~~~if~~~~~ 181 (244)
T 3d36_A 142 GGTLQVYVSIDNGRVLIRIADTGVGMTKEQLERLGEPYFT 181 (244)
T ss_dssp CEEEEEEEEEETTEEEEEEEECSSCCCHHHHHHTTSTTCC
T ss_pred CCeEEEEEEEeCCEEEEEEEecCCCCCHHHHHHHhccccc
Confidence 4455555433333456778777778899999999998853
No 458
>1b64_A Elongation factor 1-beta; guanine nucleotide exchange factor, G-protein, translation elongation; NMR {Homo sapiens} SCOP: d.58.12.1
Probab=20.90 E-value=1.5e+02 Score=17.80 Aligned_cols=58 Identities=21% Similarity=0.339 Sum_probs=36.2
Q ss_pred CHHHHHHHHHh--hCCeEeCCeEE-EEeecCCCCceEEEEcC--CCCCCChHHHHhhhcCCCc-eeee
Q psy11608 24 DIASVVRAMRA--MDGEYVGHNRV-NLGYGKSLATTCVWVDG--VAGKCGTGEHNRVNLGYGK-SLAT 85 (99)
Q Consensus 24 ~~~~a~~Ai~~--m~G~~i~~~~i-~v~~~k~~~~~~lfVg~--l~~~~s~~~L~~~F~~fG~-i~~~ 85 (99)
|.+..+.++++ ++|..++.... -++|| -++|.+.= -+...+-++|++.++.|-. |.++
T Consensus 20 Dl~~L~~~Vr~i~~~Gl~wg~~k~~piafG----ikkL~i~~vveDd~v~tD~lee~i~~~ed~VqSv 83 (91)
T 1b64_A 20 DMAKLEECVRSIQADGLVWGSSKLVPVGYG----IKKLQIQCVVEDDKVGTDMLEEQITAFEDYVQSM 83 (91)
T ss_dssp CHHHHHHHHHHCCCTTCEEEEEEEEESSSS----CEEEEEEEEECTTSSCHHHHHHHHTTCTTTEEEE
T ss_pred CHHHHHHHHHHhCcCCcEEEEEEEEEEEee----EEEEEEEEEEECCccChHHHHHHHHhccCceeEE
Confidence 44555555554 67877765332 34665 34544432 2345899999999999976 7544
No 459
>2x02_A Beta-lactamase OXA-10; class D, hydrolase, antibiotic resistance; HET: KCX PG4; 1.35A {Pseudomonas aeruginosa} PDB: 1k4e_A* 1k6r_A* 1k6s_A* 1k4f_A* 2x01_A* 2wgv_A* 2wgw_A* 2wkh_A* 2wki_A 2rl3_A* 2hpb_A 2hp9_A 2hp6_A 2wgi_A* 2hp5_A 1fof_A 1k55_A* 1e4d_A* 1ewz_A 1k54_A* ...
Probab=20.77 E-value=53 Score=22.52 Aligned_cols=27 Identities=7% Similarity=-0.065 Sum_probs=21.6
Q ss_pred ChHHHHhhhcCCCceeeeeEEEEcCCCCC
Q psy11608 68 GTGEHNRVNLGYGKSLATTCVWVDGVAGK 96 (99)
Q Consensus 68 s~~~L~~~F~~fG~i~~~~~v~~d~~~g~ 96 (99)
.+++|++.|+.++. +...|++|..||.
T Consensus 6 ~~~~l~~~~~~~~~--~~~~vv~d~~tG~ 32 (248)
T 2x02_A 6 ENTSWNKEFSAEAV--NGVFVLCKSSSKS 32 (248)
T ss_dssp ECGGGHHHHHTTTC--CEEEEEEESSTTS
T ss_pred hhHHHHHHHHhhCC--CEEEEEEECCCCC
Confidence 35689999999984 4577889999986
Done!