RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy11608
(99 letters)
>d2f9da1 d.58.7.1 (A:12-125) Pre-mRNA branch site protein p14
{Human (Homo sapiens) [TaxId: 9606]}
Length = 114
Score = 36.5 bits (84), Expect = 8e-05
Identities = 9/36 (25%), Positives = 15/36 (41%)
Query: 17 FAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKS 52
A+V Y DI A + G V + + + Y +
Sbjct: 48 TAYVVYEDIFDAKNACDHLSGFNVCNRYLVVLYYNA 83
>d2cpha1 d.58.7.1 (A:454-547) Probable RNA-binding protein 19,
Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 94
Score = 33.8 bits (77), Expect = 7e-04
Identities = 10/57 (17%), Positives = 19/57 (33%), Gaps = 1/57 (1%)
Query: 1 MVMYFVDIKKQSSASAFAFVQYTDIASVVRAMRAM-DGEYVGHNRVNLGYGKSLATT 56
V + + F FV + +A A+ ++ R+ L + S T
Sbjct: 37 TVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVLEWADSEVTV 93
>d1nu4a_ d.58.7.1 (A:) Splicesomal U1A protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 91
Score = 33.5 bits (76), Expect = 8e-04
Identities = 10/52 (19%), Positives = 23/52 (44%)
Query: 1 MVMYFVDIKKQSSASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKS 52
+ + + + AFV + +++S A+R+M G + + Y K+
Sbjct: 32 GQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYAKT 83
>d1x4ga1 d.58.7.1 (A:8-103) Nucleolysin TIAR {Human (Homo sapiens)
[TaxId: 9606]}
Length = 96
Score = 32.2 bits (73), Expect = 0.002
Identities = 8/36 (22%), Positives = 20/36 (55%)
Query: 17 FAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKS 52
++FV+++ S A+ +++G + + V +GK
Sbjct: 56 YSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKE 91
>d1h2vz_ d.58.7.1 (Z:) CBP20, 20KDa nuclear cap-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 93
Score = 32.2 bits (73), Expect = 0.003
Identities = 11/50 (22%), Positives = 20/50 (40%)
Query: 3 MYFVDIKKQSSASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKS 52
+ K + +A F FV+Y A AMR ++G + + +
Sbjct: 37 IIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWDAG 86
>d2cpfa1 d.58.7.1 (A:362-446) Probable RNA-binding protein 19,
Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 85
Score = 31.5 bits (71), Expect = 0.003
Identities = 7/52 (13%), Positives = 20/52 (38%)
Query: 1 MVMYFVDIKKQSSASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKS 52
+ + + F FV+Y +A++ + G V +++ + +
Sbjct: 29 TISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVRISER 80
>d2dita1 d.58.7.1 (A:8-106) HIV Tat-specific factor 1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 99
Score = 31.4 bits (71), Expect = 0.004
Identities = 7/38 (18%), Positives = 15/38 (39%), Gaps = 2/38 (5%)
Query: 17 FAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGY--GKS 52
A V + D ++ +DG + G ++ G +
Sbjct: 59 VASVSFRDPEEADYCIQTLDGRWFGGRQITAQAWDGTT 96
>d1wf2a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoproteins
C1/C2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 98
Score = 31.4 bits (71), Expect = 0.004
Identities = 11/48 (22%), Positives = 19/48 (39%)
Query: 5 FVDIKKQSSASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKS 52
+ I S FAFVQY + + A+ DG + +++
Sbjct: 40 YGKIVGCSVHKGFAFVQYVNERNARAAVAGEDGRMIAGQVLDINLAAE 87
>d1weya_ d.58.7.1 (A:) Calcipressin-1 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 104
Score = 30.9 bits (69), Expect = 0.009
Identities = 3/36 (8%), Positives = 12/36 (33%)
Query: 17 FAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKS 52
+ +++ S A + + L + ++
Sbjct: 48 RVRINFSNPLSAADARLRLHKTEFLGKEMKLYFAQT 83
>d2cqia1 d.58.7.1 (A:1-90) Nucleolysin TIAR {Human (Homo sapiens)
[TaxId: 9606]}
Length = 90
Score = 30.4 bits (68), Expect = 0.010
Identities = 7/36 (19%), Positives = 17/36 (47%)
Query: 17 FAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKS 52
+ FV++ + A+ AM+G + V + + +
Sbjct: 50 YCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATT 85
>d2u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 85
Score = 30.4 bits (68), Expect = 0.010
Identities = 8/36 (22%), Positives = 18/36 (50%)
Query: 17 FAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKS 52
+AF +Y DI +A+ ++G +G ++ +
Sbjct: 45 YAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASV 80
>d2cqda1 d.58.7.1 (A:1-103) RNA-binding region containing protein
1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 30.5 bits (68), Expect = 0.011
Identities = 11/53 (20%), Positives = 20/53 (37%), Gaps = 1/53 (1%)
Query: 1 MVMYFVDIKKQSSASAFAFVQYTDIASVVRAMRAMDGEYVGHN-RVNLGYGKS 52
+ ++ + + FV D A+ RA + + G VNL Y +
Sbjct: 38 EEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANVNLAYLGA 90
>d2cpda1 d.58.7.1 (A:223-308) APOBEC1 stimulating protein {Human
(Homo sapiens) [TaxId: 9606]}
Length = 86
Score = 30.4 bits (68), Expect = 0.012
Identities = 9/49 (18%), Positives = 25/49 (51%)
Query: 3 MYFVDIKKQSSASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGK 51
+ +++ +AFV +++ V AM+A++G+ + + + + K
Sbjct: 32 IKPGAVERVKKIRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAK 80
>d2adca1 d.58.7.1 (A:335-443) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 109
Score = 30.5 bits (68), Expect = 0.013
Identities = 8/36 (22%), Positives = 13/36 (36%)
Query: 17 FAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKS 52
A VQ D AM ++G + + + K
Sbjct: 42 NALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKH 77
>d1b7fa2 d.58.7.1 (A:205-289) Sex-lethal protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 85
Score = 29.5 bits (66), Expect = 0.018
Identities = 7/29 (24%), Positives = 13/29 (44%), Gaps = 1/29 (3%)
Query: 17 FAFVQYTDIASVVRAMRAMDGEYV-GHNR 44
AFV+Y A+ A++ G ++
Sbjct: 50 VAFVRYNKREEAQEAISALNNVIPEGGSQ 78
>d1cvja1 d.58.7.1 (A:11-90) Poly(A)-binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 80
Score = 29.5 bits (66), Expect = 0.022
Identities = 7/35 (20%), Positives = 17/35 (48%)
Query: 17 FAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGK 51
+A+V + A RA+ M+ + + V + + +
Sbjct: 44 YAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQ 78
>d2adba1 d.58.7.1 (A:177-284) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 108
Score = 28.8 bits (64), Expect = 0.049
Identities = 10/38 (26%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
Query: 17 FAFVQYTDIASVVRAMRAMDGE--YVGHNRVNLGYGKS 52
A +QY D S A ++DG+ Y + + + K
Sbjct: 47 QALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKL 84
>d2cpja1 d.58.7.1 (A:65-150) Non-POU domain-containing
octamer-binding protein, NonO {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 86
Score = 28.4 bits (63), Expect = 0.058
Identities = 5/39 (12%), Positives = 14/39 (35%)
Query: 17 FAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKSLAT 55
F F++ A +D + ++ + + A+
Sbjct: 46 FGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHSAS 84
>d1o0pa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 28.0 bits (62), Expect = 0.085
Identities = 8/33 (24%), Positives = 15/33 (45%)
Query: 17 FAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGY 49
FV++T + +AM+ + G + V Y
Sbjct: 60 KIFVEFTSVFDCQKAMQGLTGRKFANRVVVTKY 92
>d2bz2a1 d.58.7.1 (A:35-113) Negative elongation factor E, NELF-E
{Human (Homo sapiens) [TaxId: 9606]}
Length = 79
Score = 27.7 bits (61), Expect = 0.086
Identities = 8/35 (22%), Positives = 17/35 (48%)
Query: 17 FAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGK 51
AFV Y + S +A+ ++G V ++ + +
Sbjct: 41 CAFVTYEKMESADQAVAELNGTQVESVQLKVNIAR 75
>d1fxla1 d.58.7.1 (A:37-118) Hu antigen D (Hud) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 82
Score = 27.8 bits (61), Expect = 0.091
Identities = 9/51 (17%), Positives = 19/51 (37%)
Query: 1 MVMYFVDIKKQSSASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGK 51
V K + + FV Y D +A+ ++G + + + Y +
Sbjct: 30 ESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 80
>d1l3ka1 d.58.7.1 (A:8-91) Nuclear ribonucleoprotein A1 (RNP A1,
UP1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 84
Score = 27.7 bits (61), Expect = 0.10
Identities = 9/31 (29%), Positives = 11/31 (35%), Gaps = 1/31 (3%)
Query: 17 FAFVQYTDIASVVRAMRAMDGEYVGHN-RVN 46
F FV Y + V AM A + G
Sbjct: 50 FGFVTYATVEEVDAAMNARPHKVDGRVVEPK 80
>d2cpza1 d.58.7.1 (A:383-484) CUG triplet repeat RNA-binding
protein 1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 27.7 bits (61), Expect = 0.11
Identities = 11/36 (30%), Positives = 20/36 (55%)
Query: 17 FAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKS 52
F FV Y + S A+++M+G +G R+ + +S
Sbjct: 62 FGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRS 97
>d2cq2a1 d.58.7.1 (A:25-125) Alkylation repair AlkB homolog 8,
ALKBH8 {Human (Homo sapiens) [TaxId: 9606]}
Length = 101
Score = 27.8 bits (61), Expect = 0.12
Identities = 5/21 (23%), Positives = 10/21 (47%)
Query: 17 FAFVQYTDIASVVRAMRAMDG 37
++F +Y RA ++G
Sbjct: 58 YSFARYRTTEESKRAYVTLNG 78
>d2cq0a1 d.58.7.1 (A:231-320) Eukaryotic translation initiation
factor 3 subunit 4 {Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 27.3 bits (60), Expect = 0.13
Identities = 7/33 (21%), Positives = 14/33 (42%)
Query: 19 FVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGK 51
F+ + RA+ + G H +N+ + K
Sbjct: 54 FISFHRREDAARAIAGVSGFGYDHLILNVEWAK 86
>d1fjca_ d.58.7.1 (A:) Nucleolin {Golden hamster (Mesocricetus
auratus) [TaxId: 10036]}
Length = 96
Score = 27.3 bits (60), Expect = 0.14
Identities = 6/51 (11%), Positives = 18/51 (35%)
Query: 2 VMYFVDIKKQSSASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKS 52
+ + + + A++++ A + + G + V+L Y
Sbjct: 40 ALEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGE 90
>d1no8a_ d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 78
Score = 27.2 bits (60), Expect = 0.14
Identities = 9/52 (17%), Positives = 20/52 (38%)
Query: 1 MVMYFVDIKKQSSASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKS 52
+ V + + A V + A ++AM+ +G + +N+ S
Sbjct: 27 LKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVTS 78
>d2cq3a1 d.58.7.1 (A:110-202) RNA-binding protein 9 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 93
Score = 27.3 bits (60), Expect = 0.16
Identities = 10/56 (17%), Positives = 21/56 (37%)
Query: 1 MVMYFVDIKKQSSASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKSLATT 56
++ I + + F FV + + A RA + G V ++ + + T
Sbjct: 37 KILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVMT 92
>d1x5ua1 d.58.7.1 (A:7-99) Splicing factor 3B subunit 4 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 93
Score = 27.3 bits (60), Expect = 0.17
Identities = 5/34 (14%), Positives = 13/34 (38%)
Query: 19 FVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKS 52
FV++ A++ MD + + + +
Sbjct: 55 FVEFLSEEDADYAIKIMDMIKLYGKPIRVNKASA 88
>d1cvja2 d.58.7.1 (A:91-179) Poly(A)-binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 89
Score = 26.9 bits (59), Expect = 0.18
Identities = 10/36 (27%), Positives = 18/36 (50%)
Query: 17 FAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKS 52
+ FV + + RA+ M+G + +V +G KS
Sbjct: 50 YGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 85
>d2cqga1 d.58.7.1 (A:96-185) TAR DNA-binding protein 43, TDP-43
{Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 27.2 bits (60), Expect = 0.18
Identities = 7/35 (20%), Positives = 14/35 (40%)
Query: 3 MYFVDIKKQSSASAFAFVQYTDIASVVRAMRAMDG 37
+ K + F FV++T+ + V+ M
Sbjct: 38 VQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHM 72
>d1hd0a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein d0
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 26.5 bits (58), Expect = 0.26
Identities = 7/27 (25%), Positives = 12/27 (44%)
Query: 17 FAFVQYTDIASVVRAMRAMDGEYVGHN 43
F FV + + SV + M + + G
Sbjct: 43 FGFVLFKESESVDKVMDQKEHKLNGKV 69
>d1u6fa1 d.58.7.1 (A:1-139) RNA-binding protein UBP1 {Trypanosoma
cruzi [TaxId: 5693]}
Length = 139
Score = 27.2 bits (59), Expect = 0.30
Identities = 7/36 (19%), Positives = 19/36 (52%)
Query: 17 FAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKS 52
+ FV++ +S +A+ ++G + + R+ + S
Sbjct: 86 YGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALAAS 121
>d2cqba1 d.58.7.1 (A:1-89) Peptidyl-prolyl cis-trans isomerase E,
N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 89
Score = 26.5 bits (58), Expect = 0.31
Identities = 5/33 (15%), Positives = 12/33 (36%)
Query: 19 FVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGK 51
FV++ A+ M+ + + + K
Sbjct: 51 FVEFELAEDAAAAIDNMNESELFGRTIRVNLAK 83
>d2adca2 d.58.7.1 (A:444-531) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 26.3 bits (57), Expect = 0.33
Identities = 8/37 (21%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 17 FAFVQYTDIASVVRAMRAMDGEYVGHNR-VNLGYGKS 52
A +Q + V+A+ + +G N + + + KS
Sbjct: 50 MALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKS 86
>d1fxla2 d.58.7.1 (A:119-203) Hu antigen D (Hud) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 85
Score = 26.2 bits (57), Expect = 0.35
Identities = 4/43 (9%), Positives = 15/43 (34%), Gaps = 1/43 (2%)
Query: 3 MYFVDIKKQSSASAFAFVQYTDIASVVRAMRAMDGEYV-GHNR 44
+ + + F+++ A++ ++G+ G
Sbjct: 36 SRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATE 78
>d1whwa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 99
Score = 26.6 bits (58), Expect = 0.36
Identities = 8/52 (15%), Positives = 18/52 (34%)
Query: 1 MVMYFVDIKKQSSASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKS 52
+++ FAFV + V+A +DG+ +++
Sbjct: 36 SELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPSTI 87
>d1x0fa1 d.58.7.1 (A:183-257) Nuclear ribonucleoprotein D0 (AUF1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 26.1 bits (57), Expect = 0.36
Identities = 5/43 (11%), Positives = 11/43 (25%)
Query: 1 MVMYFVDIKKQSSASAFAFVQYTDIASVVRAMRAMDGEYVGHN 43
+ K + F F+ + + V + M
Sbjct: 27 ESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSK 69
>d1wexa_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein
L-like {Mouse (Mus musculus) [TaxId: 10090]}
Length = 104
Score = 26.3 bits (57), Expect = 0.37
Identities = 7/38 (18%), Positives = 13/38 (34%), Gaps = 2/38 (5%)
Query: 17 FAFVQYTDIASVVRAMRAMDGE--YVGHNRVNLGYGKS 52
A V++ +I S + Y+ + Y S
Sbjct: 53 QALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYSTS 90
>d1rk8a_ d.58.7.1 (A:) RNA-binding protein 8 {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 88
Score = 26.2 bits (57), Expect = 0.42
Identities = 6/52 (11%), Positives = 20/52 (38%)
Query: 1 MVMYFVDIKKQSSASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKS 52
++ ++ + +A V+Y + A A++G + + + +
Sbjct: 35 KNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFV 86
>d1x4aa1 d.58.7.1 (A:9-103) Splicing factor, arginine/serine-rich
1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 95
Score = 26.2 bits (57), Expect = 0.49
Identities = 12/48 (25%), Positives = 22/48 (45%)
Query: 5 FVDIKKQSSASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKS 52
+D+K + FAFV++ D A+ DG R+ + + +S
Sbjct: 43 DIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRS 90
>d1p1ta_ d.58.7.1 (A:) Cleavage stimulation factor, 64 kda subunit
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 25.9 bits (56), Expect = 0.57
Identities = 8/36 (22%), Positives = 16/36 (44%)
Query: 17 FAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKS 52
+ F +Y D + + AMR ++G + + S
Sbjct: 52 YGFCEYQDQETALSAMRNLNGREFSGRALRVDNAAS 87
>d1x5sa1 d.58.7.1 (A:8-97) Cold-inducible RNA-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 25.9 bits (56), Expect = 0.58
Identities = 10/36 (27%), Positives = 17/36 (47%)
Query: 17 FAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKS 52
F FV + +I AM AM+G+ V ++ +
Sbjct: 49 FGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAGK 84
>d2cqpa1 d.58.7.1 (A:917-1002) RNA-binding protein 12 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 86
Score = 25.4 bits (55), Expect = 0.68
Identities = 6/39 (15%), Positives = 15/39 (38%)
Query: 9 KKQSSASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNL 47
++ + A V + A+ ++ +G +V L
Sbjct: 45 NEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKL 83
>d1jmta_ d.58.7.3 (A:) U2AF35
(35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 25.8 bits (56), Expect = 0.68
Identities = 2/33 (6%), Positives = 12/33 (36%)
Query: 17 FAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGY 49
+V++ +A+ ++ + ++
Sbjct: 70 NVYVKFRREEDAEKAVIDLNNRWFNGQPIHAEL 102
>d1b7fa1 d.58.7.1 (A:123-204) Sex-lethal protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 82
Score = 25.0 bits (54), Expect = 0.97
Identities = 9/33 (27%), Positives = 18/33 (54%)
Query: 19 FVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGK 51
FV +T RA++ ++G V + R+ + Y +
Sbjct: 48 FVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 80
>d2cpea1 d.58.7.1 (A:353-453) RNA-binding protein EWS {Human (Homo
sapiens) [TaxId: 9606]}
Length = 101
Score = 25.1 bits (54), Expect = 1.0
Identities = 7/52 (13%), Positives = 19/52 (36%), Gaps = 1/52 (1%)
Query: 1 MVMYFVDIKKQSSASAFAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKS 52
M+ ++D + Y D + A+ DG+ +++ + +
Sbjct: 45 MIHIYLDKETGKPKGDATVS-YEDPPTAKAAVEWFDGKDFQGSKLKVSLARK 95
>d2disa1 d.58.7.1 (A:8-103) Hypothetical protein FLJ20273 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 96
Score = 25.0 bits (54), Expect = 1.2
Identities = 7/21 (33%), Positives = 10/21 (47%)
Query: 17 FAFVQYTDIASVVRAMRAMDG 37
FAFV+Y + A R +
Sbjct: 47 FAFVEYESHRAAAMARRKLMP 67
>d1w7ca1 b.30.2.1 (A:316-775) Lysyl oxidase PplO, domain 3 {Yeast
(Pichia pastoris) [TaxId: 4922]}
Length = 460
Score = 25.3 bits (55), Expect = 1.4
Identities = 10/59 (16%), Positives = 17/59 (28%), Gaps = 1/59 (1%)
Query: 18 AFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKSLATTCVWVDGVAGKCGTGEHNRVN 76
+Y + D Y NR +L G +T + + +NR
Sbjct: 65 LIAEYGSDDPFNQHTFYSDISYGVGNRFSLVPGYDCPSTAGYFTTDTFE-YDEFYNRTL 122
>d2cqca1 d.58.7.1 (A:109-191) Arginine/serine-rich splicing factor
10 {Human (Homo sapiens) [TaxId: 9606]}
Length = 83
Score = 24.3 bits (52), Expect = 1.6
Identities = 5/28 (17%), Positives = 11/28 (39%)
Query: 19 FVQYTDIASVVRAMRAMDGEYVGHNRVN 46
FV + ++ A +G + R+
Sbjct: 55 FVYFENVDDAKEAKERANGMELDGRRIR 82
>d1x4ba1 d.58.7.1 (A:8-110) Heterogeneous nuclear
ribonucleoproteins A2/B1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 103
Score = 24.6 bits (53), Expect = 1.7
Identities = 9/31 (29%), Positives = 12/31 (38%), Gaps = 1/31 (3%)
Query: 17 FAFVQYTDIASVVRAMRAMDGEYVGHN-RVN 46
F FV ++ +A V AM A G
Sbjct: 64 FGFVTFSSMAEVDAAMAARPHSIDGRVVEPK 94
>d1x5ta1 d.58.7.1 (A:8-90) Splicing factor 3B subunit 4 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 83
Score = 24.3 bits (52), Expect = 1.7
Identities = 8/36 (22%), Positives = 19/36 (52%)
Query: 17 FAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGKS 52
+AF+ + + A+ AM+G+Y+ + + + Y
Sbjct: 43 YAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFK 78
>d1wg4a_ d.58.7.1 (A:) Splicing factor, arginine/serine-rich 9
(SFRS9) {Mouse (Mus musculus) [TaxId: 10090]}
Length = 98
Score = 24.4 bits (52), Expect = 1.8
Identities = 6/35 (17%), Positives = 12/35 (34%)
Query: 17 FAFVQYTDIASVVRAMRAMDGEYVGHNRVNLGYGK 51
V+Y + A+R +D + Y +
Sbjct: 52 MGMVEYLRKEDMEYALRKLDDTKFRSHEGETSYIR 86
>d1x4ea1 d.58.7.1 (A:8-79) RNA-binding motif,
single-stranded-interacting protein 2, RBMS2 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 72
Score = 24.0 bits (51), Expect = 2.4
Identities = 4/19 (21%), Positives = 10/19 (52%)
Query: 19 FVQYTDIASVVRAMRAMDG 37
FV + ++ +A+ A+
Sbjct: 44 FVDFDSPSAAQKAVTALKA 62
>d2e7ya1 d.157.1.7 (A:1-280) Ribonuclease Z (RNase Z) {Thermotoga
maritima [TaxId: 2336]}
Length = 280
Score = 24.3 bits (51), Expect = 2.9
Identities = 6/37 (16%), Positives = 14/37 (37%), Gaps = 2/37 (5%)
Query: 47 LGYGKSLATTCVWVDG--VAGKCGTGEHNRVNLGYGK 81
+G+ K+L +T ++ + G G +
Sbjct: 4 IGFSKALFSTWIYYSPERILFDAGEGVSTTLGSKVYA 40
>d1whya_ d.58.7.1 (A:) Putative RNA-binding protein 15B, Rbm15b
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 97
Score = 23.5 bits (50), Expect = 4.5
Identities = 9/17 (52%), Positives = 13/17 (76%)
Query: 47 LGYGKSLATTCVWVDGV 63
+GYGK+ TT +WV G+
Sbjct: 9 IGYGKANPTTRLWVGGL 25
Score = 23.5 bits (50), Expect = 4.5
Identities = 9/17 (52%), Positives = 13/17 (76%)
Query: 77 LGYGKSLATTCVWVDGV 93
+GYGK+ TT +WV G+
Sbjct: 9 IGYGKANPTTRLWVGGL 25
Score = 23.1 bits (49), Expect = 5.4
Identities = 11/38 (28%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Query: 17 FAFVQYTDIASVVRAMRAMDGEYVG--HNRVNLGYGKS 52
FA++QY + + A M G +G R+ + + KS
Sbjct: 55 FAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAKS 92
>d1uawa_ d.58.7.1 (A:) Musashi-1 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 77
Score = 23.0 bits (49), Expect = 4.8
Identities = 7/34 (20%), Positives = 12/34 (35%), Gaps = 1/34 (2%)
Query: 17 FAFVQYTDIASVVRAMRAMDGEYVGHN-RVNLGY 49
F FV + D A V + + E + +
Sbjct: 44 FGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAF 77
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.134 0.422
Gapped
Lambda K H
0.267 0.0553 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 362,747
Number of extensions: 13833
Number of successful extensions: 81
Number of sequences better than 10.0: 1
Number of HSP's gapped: 81
Number of HSP's successfully gapped: 65
Length of query: 99
Length of database: 2,407,596
Length adjustment: 61
Effective length of query: 38
Effective length of database: 1,570,066
Effective search space: 59662508
Effective search space used: 59662508
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.3 bits)