BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11609
(83 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8SX83|SPEN_DROME Protein split ends OS=Drosophila melanogaster GN=spen PE=1 SV=2
Length = 5560
Score = 123 bits (308), Expect = 4e-28, Method: Composition-based stats.
Identities = 54/76 (71%), Positives = 62/76 (81%), Gaps = 1/76 (1%)
Query: 9 SDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKI 68
SDTSLKDGL+HEYKKHGKV+WVK++GQ +RY LVCFKK DD EKA+ SH+KHFFGCKI
Sbjct: 566 SDTSLKDGLFHEYKKHGKVTWVKVVGQNSERYALVCFKKPDDVEKALEVSHDKHFFGCKI 625
Query: 69 DVSPYHDVDFE-LEFR 83
+V PY D E EFR
Sbjct: 626 EVEPYQGYDVEDNEFR 641
>sp|Q96T58|MINT_HUMAN Msx2-interacting protein OS=Homo sapiens GN=SPEN PE=1 SV=1
Length = 3664
Score = 78.6 bits (192), Expect = 1e-14, Method: Composition-based stats.
Identities = 39/77 (50%), Positives = 55/77 (71%), Gaps = 2/77 (2%)
Query: 9 SDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKI 68
+DTSLKDGL+HE+KK GKV+ V+I G +RYGLV F++ +D EKA+ S K FFG +I
Sbjct: 347 TDTSLKDGLFHEFKKFGKVTSVQIHGTSEERYGLVFFRQQEDQEKALTASKGKLFFGMQI 406
Query: 69 DVSPY--HDVDFELEFR 83
+V+ + + + E EFR
Sbjct: 407 EVTAWIGPETESENEFR 423
>sp|Q62504|MINT_MOUSE Msx2-interacting protein OS=Mus musculus GN=Spen PE=1 SV=2
Length = 3644
Score = 77.8 bits (190), Expect = 2e-14, Method: Composition-based stats.
Identities = 39/76 (51%), Positives = 54/76 (71%), Gaps = 2/76 (2%)
Query: 10 DTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKID 69
DTSLKDGL+HE+KK GKV+ V+I G +RYGLV F++ +D EKA+ S K FFG +I+
Sbjct: 349 DTSLKDGLFHEFKKFGKVTSVQIHGASEERYGLVFFRQQEDQEKALTASKGKLFFGMQIE 408
Query: 70 VSPY--HDVDFELEFR 83
V+ + + + E EFR
Sbjct: 409 VTAWVGPETESENEFR 424
>sp|Q96T37|RBM15_HUMAN Putative RNA-binding protein 15 OS=Homo sapiens GN=RBM15 PE=1 SV=2
Length = 977
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 22/52 (42%), Positives = 33/52 (63%), Gaps = 6/52 (11%)
Query: 8 VSDTSLKDGLYHEYKKHGKVSWVKI-----IGQGGDRYGLVCFKKADDAEKA 54
+SD +++DGL+HE+K+ G VS VKI G G +R V F++ +DA A
Sbjct: 181 LSDEAVEDGLFHEFKRFGDVS-VKISHLSGSGSGDERVAFVNFRRPEDARAA 231
>sp|A3LXL0|PABP_PICST Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Scheffersomyces stipitis (strain ATCC 58785 / CBS
6054 / NBRC 10063 / NRRL Y-11545) GN=PAB1 PE=3 SV=1
Length = 632
Score = 38.1 bits (87), Expect = 0.017, Method: Composition-based stats.
Identities = 21/66 (31%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
Query: 3 LFIYVVSDTSLKDGLYHEYKKHGKVSWVKI-IGQGGDR--YGLVCFKKADDAEKAILGSH 59
LFI + DT + L E+K G ++ ++ + + G +G VCF ++A KAI +
Sbjct: 338 LFIKNLDDTIDSEKLEEEFKPFGTITSARVMVDETGKSKGFGFVCFSSPEEATKAITEMN 397
Query: 60 EKHFFG 65
++ FFG
Sbjct: 398 QRMFFG 403
>sp|P0CB38|PAB4L_HUMAN Polyadenylate-binding protein 4-like OS=Homo sapiens GN=PABPC4L
PE=2 SV=1
Length = 370
Score = 36.2 bits (82), Expect = 0.063, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Query: 3 LFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDR--YGLVCFKKADDAEKAI 55
L+I + DT + L +E+ G +S VK++ + G +GL+CF +DA KA+
Sbjct: 295 LYIKNLDDTIDDEKLRNEFSSFGSISRVKVMQEEGQSKGFGLICFSSPEDATKAM 349
Score = 30.4 bits (67), Expect = 3.0, Method: Composition-based stats.
Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 3/70 (4%)
Query: 17 LYHEYKKHGKVSWVKIIG--QGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYH 74
LY + GK+ K++ QG Y V F+ A++AI + K GCK+ V +
Sbjct: 114 LYEHFSAFGKILSSKVMSDDQGSKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFK 173
Query: 75 D-VDFELEFR 83
+ D E E R
Sbjct: 174 NRKDREAELR 183
>sp|Q4VXU2|PAP1L_HUMAN Polyadenylate-binding protein 1-like OS=Homo sapiens GN=PABPC1L
PE=2 SV=1
Length = 614
Score = 35.4 bits (80), Expect = 0.11, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Query: 3 LFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDR--YGLVCFKKADDAEKAI 55
L++ + D+ D L E+ +G ++ K++ +GG +G VCF ++A KA+
Sbjct: 296 LYVKNLDDSIDDDKLRKEFSPYGVITSAKVMTEGGHSKGFGFVCFSSPEEATKAV 350
>sp|Q1ZXC2|PAP1B_DICDI Polyadenylate-binding protein 1-B OS=Dictyostelium discoideum
GN=pabpc1B PE=3 SV=1
Length = 814
Score = 34.7 bits (78), Expect = 0.20, Method: Composition-based stats.
Identities = 24/75 (32%), Positives = 40/75 (53%), Gaps = 5/75 (6%)
Query: 1 MALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDR---YGLVCFKKADDAEKAILG 57
++LFI + ++ +D + E+ KHG + +KI+ R +G + F + +A+KA L
Sbjct: 470 LSLFINNIDESIDRDLIKEEFAKHGTIIGIKIVQDENARNKGFGFISFSEIQEAQKA-LD 528
Query: 58 SHEKHFFGCK-IDVS 71
S FG K I VS
Sbjct: 529 SLNGFTFGSKQIQVS 543
>sp|Q6GR16|EPABB_XENLA Embryonic polyadenylate-binding protein B OS=Xenopus laevis
GN=epabp-b PE=2 SV=1
Length = 629
Score = 34.3 bits (77), Expect = 0.20, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Query: 3 LFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDR--YGLVCFKKADDAEKAI 55
L++ + D D L E+ +G ++ K++ +GG +G VCF ++A KA+
Sbjct: 296 LYVKNLDDGIDDDRLRKEFSPYGTITSTKVMTEGGHSKGFGFVCFSSPEEATKAV 350
>sp|Q6DEY7|EPAB_XENTR Embryonic polyadenylate-binding protein OS=Xenopus tropicalis
GN=epabp PE=2 SV=1
Length = 629
Score = 34.3 bits (77), Expect = 0.21, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Query: 3 LFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDR--YGLVCFKKADDAEKAI 55
L++ + D D L E+ +G ++ K++ +GG +G VCF ++A KA+
Sbjct: 296 LYVKNLDDGIDDDRLRKEFSPYGTITSAKVMTEGGHSKGFGFVCFSSPEEATKAV 350
>sp|Q6BI95|PABP_DEBHA Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 /
JCM 1990 / NBRC 0083 / IGC 2968) GN=PAB1 PE=3 SV=2
Length = 627
Score = 34.3 bits (77), Expect = 0.23, Method: Composition-based stats.
Identities = 19/66 (28%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
Query: 3 LFIYVVSDTSLKDGLYHEYKKHGKVSWVKI-IGQGGDR--YGLVCFKKADDAEKAILGSH 59
LFI + DT + L E+K G ++ ++ + + G +G VCF ++A KAI +
Sbjct: 337 LFIKNLDDTIDSEKLEEEFKPFGSITSARVMVDETGKSKGFGFVCFSSPEEATKAITEMN 396
Query: 60 EKHFFG 65
++ +G
Sbjct: 397 QRMIYG 402
>sp|O13845|RSD1_SCHPO RNA-binding protein rsd1 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=rsd1 PE=1 SV=2
Length = 603
Score = 34.3 bits (77), Expect = 0.26, Method: Composition-based stats.
Identities = 22/62 (35%), Positives = 35/62 (56%), Gaps = 3/62 (4%)
Query: 22 KKHGKVSWVKII-GQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDVDFEL 80
+K+GKV + ++ + G + V F+ AD AEKAI G H++ F G I S + D+
Sbjct: 538 EKYGKVVHIAVVPNELGQIF--VKFENADFAEKAITGLHQRWFGGRTIKASILPETDYYF 595
Query: 81 EF 82
+F
Sbjct: 596 KF 597
>sp|Q98SP8|EPABA_XENLA Embryonic polyadenylate-binding protein A OS=Xenopus laevis
GN=epabp-a PE=1 SV=2
Length = 629
Score = 33.5 bits (75), Expect = 0.41, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Query: 3 LFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDR--YGLVCFKKADDAEKAI 55
L++ + D D L E+ +G ++ K++ +GG +G VCF ++A KA+
Sbjct: 296 LYVKNLDDGIDDDRLRKEFLPYGTITSAKVMTEGGHSKGFGFVCFSSPEEATKAV 350
>sp|Q6CDH3|PABP_YARLI Polyadenylate-binding protein, cytoplasmic and nuclear OS=Yarrowia
lipolytica (strain CLIB 122 / E 150) GN=PAB1 PE=3 SV=1
Length = 629
Score = 32.3 bits (72), Expect = 0.83, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Query: 3 LFIYVVSDTSLKDGLYHEYKKHGKVSWVKI-IGQGGDR--YGLVCFKKADDAEKAI 55
L+I + DT D L E+ HG ++ K+ + + G +G VC+ ++A KA+
Sbjct: 332 LYIKNLDDTIDDDKLRAEFAPHGTITSAKVMVDEAGKSKGFGFVCYSSPEEATKAV 387
>sp|Q4ULG2|IF3_RICFE Translation initiation factor IF-3 OS=Rickettsia felis (strain
ATCC VR-1525 / URRWXCal2) GN=infC PE=3 SV=2
Length = 185
Score = 32.3 bits (72), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 1 MALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKA-DDAEKAIL 56
M LFI ++ + + + + + V+++G+ G+ +G+V +KA D AE+A L
Sbjct: 1 MYLFINIIRRNFISKNNFPKANREIRAREVRLVGENGEMHGVVNIRKALDMAERASL 57
>sp|Q5AI15|PABP_CANAL Polyadenylate-binding protein, cytoplasmic and nuclear OS=Candida
albicans (strain SC5314 / ATCC MYA-2876) GN=PAB1 PE=3
SV=1
Length = 629
Score = 32.0 bits (71), Expect = 1.0, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Query: 3 LFIYVVSDTSLKDGLYHEYKKHGKVSWVKI-IGQGGDR--YGLVCFKKADDAEKAI 55
LF+ + DT + L E+K G ++ K+ + + G +G VCF ++A KAI
Sbjct: 338 LFVKNLDDTIDSEKLEEEFKPFGTITSAKVMVDEAGKSKGFGFVCFTTPEEATKAI 393
>sp|Q13310|PABP4_HUMAN Polyadenylate-binding protein 4 OS=Homo sapiens GN=PABPC4 PE=1 SV=1
Length = 644
Score = 31.2 bits (69), Expect = 2.1, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 3 LFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDR--YGLVCFKKADDAEKAI 55
L+I + DT + L E+ G ++ K++ + G +G VCF ++A KA+
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAV 350
>sp|Q6IP09|PABPB_XENLA Polyadenylate-binding protein 1-B OS=Xenopus laevis GN=pabpc1-b
PE=2 SV=1
Length = 633
Score = 30.8 bits (68), Expect = 2.7, Method: Composition-based stats.
Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 3 LFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDR--YGLVCFKKADDAEKAI 55
L++ + D + L E+ G ++ K++ +GG +G VCF ++A KA+
Sbjct: 296 LYVKNLDDGIDDERLRKEFTPFGSITSAKVMMEGGRSKGFGFVCFSSPEEATKAV 350
>sp|Q9EPH8|PABP1_RAT Polyadenylate-binding protein 1 OS=Rattus norvegicus GN=Pabpc1 PE=2
SV=1
Length = 636
Score = 30.8 bits (68), Expect = 2.7, Method: Composition-based stats.
Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 3 LFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDR--YGLVCFKKADDAEKAI 55
L++ + D + L E+ G ++ K++ +GG +G VCF ++A KA+
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAV 350
>sp|Q5R8F7|PABP1_PONAB Polyadenylate-binding protein 1 OS=Pongo abelii GN=PABPC1 PE=2 SV=1
Length = 636
Score = 30.8 bits (68), Expect = 2.7, Method: Composition-based stats.
Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 3 LFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDR--YGLVCFKKADDAEKAI 55
L++ + D + L E+ G ++ K++ +GG +G VCF ++A KA+
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAV 350
>sp|P29341|PABP1_MOUSE Polyadenylate-binding protein 1 OS=Mus musculus GN=Pabpc1 PE=1 SV=2
Length = 636
Score = 30.8 bits (68), Expect = 2.7, Method: Composition-based stats.
Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 3 LFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDR--YGLVCFKKADDAEKAI 55
L++ + D + L E+ G ++ K++ +GG +G VCF ++A KA+
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAV 350
>sp|P11940|PABP1_HUMAN Polyadenylate-binding protein 1 OS=Homo sapiens GN=PABPC1 PE=1 SV=2
Length = 636
Score = 30.8 bits (68), Expect = 2.7, Method: Composition-based stats.
Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 3 LFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDR--YGLVCFKKADDAEKAI 55
L++ + D + L E+ G ++ K++ +GG +G VCF ++A KA+
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAV 350
>sp|P61286|PABP1_BOVIN Polyadenylate-binding protein 1 OS=Bos taurus GN=PABPC1 PE=2 SV=1
Length = 636
Score = 30.8 bits (68), Expect = 2.7, Method: Composition-based stats.
Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 3 LFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDR--YGLVCFKKADDAEKAI 55
L++ + D + L E+ G ++ K++ +GG +G VCF ++A KA+
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAV 350
>sp|A5DM21|PABP_PICGU Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566
/ DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) GN=PAB1
PE=3 SV=2
Length = 631
Score = 30.4 bits (67), Expect = 3.5, Method: Composition-based stats.
Identities = 16/66 (24%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Query: 3 LFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDR---YGLVCFKKADDAEKAILGSH 59
LF+ + D+ + L E+K G ++ +++ + +G VCF ++A KAI +
Sbjct: 344 LFVKNLDDSIDSEKLEEEFKPFGTITSARVMVDDAGKSKGFGFVCFSSPEEATKAITEMN 403
Query: 60 EKHFFG 65
++ G
Sbjct: 404 QRMIQG 409
>sp|Q80YR5|SAFB2_MOUSE Scaffold attachment factor B2 OS=Mus musculus GN=Safb2 PE=1 SV=2
Length = 991
Score = 30.4 bits (67), Expect = 3.7, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 4/72 (5%)
Query: 3 LFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQ----GGDRYGLVCFKKADDAEKAILGS 58
L++ +S ++ L + KHGKV K++ G YG V +D+A K I
Sbjct: 453 LWVSGLSSSTRAADLKSLFSKHGKVIGAKVVTNARSPGARCYGFVTMSTSDEATKCISHL 512
Query: 59 HEKHFFGCKIDV 70
H G I V
Sbjct: 513 HRTELHGRMISV 524
>sp|P60050|PABP5_PONPY Polyadenylate-binding protein 5 OS=Pongo pygmaeus GN=PABPC5 PE=3
SV=1
Length = 382
Score = 30.0 bits (66), Expect = 4.2, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 4/56 (7%)
Query: 3 LFIYVVSDTSLKDGLYHEYKKHGKVSWVKI---IGQGGDRYGLVCFKKADDAEKAI 55
++I + +T + L E+ G +S K+ +GQG +G+VCF ++A KA+
Sbjct: 304 IYIKNLDETINDEKLKEEFSSFGSISRAKVMMEVGQGKG-FGVVCFSSFEEATKAV 358
>sp|P60049|PABP5_PANTR Polyadenylate-binding protein 5 OS=Pan troglodytes GN=PABPC5 PE=3
SV=1
Length = 382
Score = 30.0 bits (66), Expect = 4.2, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 4/56 (7%)
Query: 3 LFIYVVSDTSLKDGLYHEYKKHGKVSWVKI---IGQGGDRYGLVCFKKADDAEKAI 55
++I + +T + L E+ G +S K+ +GQG +G+VCF ++A KA+
Sbjct: 304 IYIKNLDETINDEKLKEEFSSFGSISRAKVMMEVGQGKG-FGVVCFSSFEEATKAV 358
>sp|Q7JGR2|PABP5_MACMU Polyadenylate-binding protein 5 OS=Macaca mulatta GN=PABPC5 PE=3
SV=1
Length = 382
Score = 30.0 bits (66), Expect = 4.2, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 4/56 (7%)
Query: 3 LFIYVVSDTSLKDGLYHEYKKHGKVSWVKI---IGQGGDRYGLVCFKKADDAEKAI 55
++I + +T + L E+ G +S K+ +GQG +G+VCF ++A KA+
Sbjct: 304 IYIKNLDETINDEKLKEEFSSFGSISRAKVMMEVGQGKG-FGVVCFSSFEEATKAV 358
>sp|P60048|PABP5_HYLLA Polyadenylate-binding protein 5 OS=Hylobates lar GN=PABPC5 PE=3
SV=1
Length = 382
Score = 30.0 bits (66), Expect = 4.2, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 4/56 (7%)
Query: 3 LFIYVVSDTSLKDGLYHEYKKHGKVSWVKI---IGQGGDRYGLVCFKKADDAEKAI 55
++I + +T + L E+ G +S K+ +GQG +G+VCF ++A KA+
Sbjct: 304 IYIKNLDETINDEKLKEEFSSFGSISRAKVMMEVGQGKG-FGVVCFSSFEEATKAV 358
>sp|Q96DU9|PABP5_HUMAN Polyadenylate-binding protein 5 OS=Homo sapiens GN=PABPC5 PE=2 SV=1
Length = 382
Score = 30.0 bits (66), Expect = 4.2, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 4/56 (7%)
Query: 3 LFIYVVSDTSLKDGLYHEYKKHGKVSWVKI---IGQGGDRYGLVCFKKADDAEKAI 55
++I + +T + L E+ G +S K+ +GQG +G+VCF ++A KA+
Sbjct: 304 IYIKNLDETINDEKLKEEFSSFGSISRAKVMMEVGQGKG-FGVVCFSSFEEATKAV 358
>sp|P60047|PABP5_GORGO Polyadenylate-binding protein 5 OS=Gorilla gorilla gorilla
GN=PABPC5 PE=3 SV=1
Length = 382
Score = 30.0 bits (66), Expect = 4.2, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 4/56 (7%)
Query: 3 LFIYVVSDTSLKDGLYHEYKKHGKVSWVKI---IGQGGDRYGLVCFKKADDAEKAI 55
++I + +T + L E+ G +S K+ +GQG +G+VCF ++A KA+
Sbjct: 304 IYIKNLDETINDEKLKEEFSSFGSISRAKVMMEVGQGKG-FGVVCFSSFEEATKAV 358
>sp|Q14151|SAFB2_HUMAN Scaffold attachment factor B2 OS=Homo sapiens GN=SAFB2 PE=1 SV=1
Length = 953
Score = 30.0 bits (66), Expect = 4.3, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 4/72 (5%)
Query: 3 LFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQ----GGDRYGLVCFKKADDAEKAILGS 58
L++ +S T+ L + + K+GKV K++ G YG V +D+A K I
Sbjct: 409 LWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSDEATKCISHL 468
Query: 59 HEKHFFGCKIDV 70
H G I V
Sbjct: 469 HRTELHGRMISV 480
>sp|P20965|PABPA_XENLA Polyadenylate-binding protein 1-A OS=Xenopus laevis GN=pabpc1-a
PE=1 SV=3
Length = 633
Score = 29.6 bits (65), Expect = 5.2, Method: Composition-based stats.
Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 3 LFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDR--YGLVCFKKADDAEKAI 55
L++ + D + L E+ G ++ K++ +GG +G VCF ++A KA+
Sbjct: 296 LYVKNLDDGIDDERLRKEFLPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAV 350
>sp|Q621Q3|MEL47_CAEBR Maternal effect lethal protein 47 OS=Caenorhabditis briggsae
GN=mel-47 PE=3 SV=1
Length = 365
Score = 29.6 bits (65), Expect = 5.5, Method: Composition-based stats.
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 17 LYHEYKKHGKVSWVKIIGQGGD-RYGLVCFKKADDAEKAILGSHEKHFFG 65
L+H ++ G+V + ++ GQ D + G V A DAE+ H+ + G
Sbjct: 29 LFHIFQVFGRVGYCRVAGQSNDMQLGFVNMLSAADAEEVRKNLHDGNLIG 78
>sp|P04147|PABP_YEAST Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=PAB1 PE=1 SV=4
Length = 577
Score = 29.6 bits (65), Expect = 5.5, Method: Composition-based stats.
Identities = 15/62 (24%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Query: 3 LFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDR---YGLVCFKKADDAEKAILGSH 59
LF+ + D+ + L E+ +G ++ K++ + +G VCF ++A KAI +
Sbjct: 324 LFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRTENGKSKGFGFVCFSTPEEATKAITEKN 383
Query: 60 EK 61
++
Sbjct: 384 QQ 385
>sp|Q09293|MEL47_CAEEL Maternal effect lethal protein 47 OS=Caenorhabditis elegans
GN=mel-47 PE=2 SV=2
Length = 367
Score = 29.6 bits (65), Expect = 5.7, Method: Composition-based stats.
Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Query: 17 LYHEYKKHGKVSWVKIIGQGGD---RYGLVCFKKADDAEK 53
L+H ++ GKVS+ +++GQ D + G V DA++
Sbjct: 29 LFHVFQNFGKVSYCRVVGQSNDGQVQLGFVNMMSVADADE 68
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.143 0.451
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,885,587
Number of Sequences: 539616
Number of extensions: 1385695
Number of successful extensions: 2816
Number of sequences better than 100.0: 38
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 2782
Number of HSP's gapped (non-prelim): 67
length of query: 83
length of database: 191,569,459
effective HSP length: 54
effective length of query: 29
effective length of database: 162,430,195
effective search space: 4710475655
effective search space used: 4710475655
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)