Query psy11609
Match_columns 83
No_of_seqs 115 out of 146
Neff 5.4
Searched_HMMs 46136
Date Fri Aug 16 23:01:09 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11609.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11609hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.8 1.7E-19 3.7E-24 133.1 9.4 74 2-75 271-348 (352)
2 KOG0107|consensus 99.8 1.4E-19 3E-24 129.7 7.4 77 2-79 12-88 (195)
3 PLN03134 glycine-rich RNA-bind 99.8 8.1E-19 1.8E-23 119.8 9.8 75 2-76 36-114 (144)
4 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.8 2.4E-18 5.1E-23 127.1 9.3 74 2-75 5-82 (352)
5 PF00076 RRM_1: RNA recognitio 99.7 8.4E-18 1.8E-22 97.7 7.9 67 3-69 1-70 (70)
6 TIGR01628 PABP-1234 polyadenyl 99.7 9.6E-18 2.1E-22 132.1 8.5 76 2-77 287-365 (562)
7 PF13893 RRM_5: RNA recognitio 99.7 5.9E-17 1.3E-21 93.3 7.5 56 17-73 1-56 (56)
8 PLN03120 nucleic acid binding 99.7 1.2E-16 2.5E-21 119.4 9.4 73 1-74 5-78 (260)
9 TIGR01659 sex-lethal sex-letha 99.7 6.7E-17 1.5E-21 123.7 8.1 73 2-74 109-185 (346)
10 KOG0113|consensus 99.7 1.5E-16 3.2E-21 121.2 7.8 73 2-74 103-179 (335)
11 smart00362 RRM_2 RNA recogniti 99.7 6.4E-16 1.4E-20 87.7 7.9 70 2-71 1-72 (72)
12 TIGR01628 PABP-1234 polyadenyl 99.7 3.2E-16 6.9E-21 123.5 8.9 75 1-75 1-79 (562)
13 COG0724 RNA-binding proteins ( 99.7 4.2E-16 9.1E-21 105.0 8.3 73 2-74 117-193 (306)
14 KOG0148|consensus 99.7 1.3E-16 2.8E-21 120.7 6.2 78 2-79 64-145 (321)
15 PLN03121 nucleic acid binding 99.7 5.4E-16 1.2E-20 114.9 9.3 75 1-76 6-81 (243)
16 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.7 5.9E-16 1.3E-20 121.3 9.2 73 2-75 277-350 (481)
17 PF14259 RRM_6: RNA recognitio 99.6 1.3E-15 2.8E-20 90.0 8.2 67 3-69 1-70 (70)
18 smart00361 RRM_1 RNA recogniti 99.6 8.8E-16 1.9E-20 92.6 7.2 60 12-71 4-70 (70)
19 KOG4207|consensus 99.6 2.7E-16 5.9E-21 115.7 5.6 76 2-77 15-95 (256)
20 TIGR01622 SF-CC1 splicing fact 99.6 1.9E-15 4.1E-20 115.6 9.1 73 2-74 188-264 (457)
21 TIGR01645 half-pint poly-U bin 99.6 1.5E-15 3.3E-20 123.8 8.4 73 2-74 109-185 (612)
22 TIGR01622 SF-CC1 splicing fact 99.6 3.2E-15 7E-20 114.4 8.7 73 2-75 91-167 (457)
23 TIGR01645 half-pint poly-U bin 99.6 3.9E-15 8.4E-20 121.4 9.1 76 2-77 206-285 (612)
24 TIGR01659 sex-lethal sex-letha 99.6 4.2E-15 9.2E-20 113.8 8.7 74 2-75 195-274 (346)
25 PLN03213 repressor of silencin 99.6 4.1E-15 8.8E-20 120.1 8.5 74 1-74 11-86 (759)
26 TIGR01642 U2AF_lg U2 snRNP aux 99.6 1.2E-14 2.6E-19 112.3 9.0 73 2-74 297-373 (509)
27 smart00360 RRM RNA recognition 99.6 1.6E-14 3.5E-19 81.4 7.0 67 5-71 1-71 (71)
28 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.6 1.5E-14 3.3E-19 113.4 9.2 73 2-76 4-78 (481)
29 cd00590 RRM RRM (RNA recogniti 99.6 3.5E-14 7.6E-19 80.8 8.3 70 2-71 1-73 (74)
30 TIGR01648 hnRNP-R-Q heterogene 99.6 2.2E-14 4.7E-19 116.4 9.2 73 2-78 235-309 (578)
31 KOG0125|consensus 99.5 1.2E-14 2.5E-19 112.2 6.6 72 3-74 99-172 (376)
32 KOG0123|consensus 99.5 3.2E-14 7E-19 110.0 7.1 74 3-77 79-154 (369)
33 TIGR01642 U2AF_lg U2 snRNP aux 99.5 8.1E-14 1.8E-18 107.7 8.4 62 13-74 432-500 (509)
34 TIGR01648 hnRNP-R-Q heterogene 99.5 7.8E-14 1.7E-18 113.2 7.4 73 1-73 59-135 (578)
35 KOG0111|consensus 99.5 3.7E-14 8.1E-19 105.6 5.1 75 2-76 12-90 (298)
36 KOG0149|consensus 99.5 5E-14 1.1E-18 104.4 5.6 71 3-74 15-89 (247)
37 KOG0123|consensus 99.5 3.1E-14 6.8E-19 110.0 4.3 75 2-76 272-349 (369)
38 KOG1548|consensus 99.4 3.1E-13 6.7E-18 104.7 7.1 66 12-77 288-353 (382)
39 KOG0117|consensus 99.4 8E-13 1.7E-17 105.1 7.1 74 2-79 261-334 (506)
40 KOG0114|consensus 99.4 1.8E-12 3.9E-17 87.2 7.6 73 3-75 21-94 (124)
41 KOG0121|consensus 99.4 9.8E-13 2.1E-17 91.1 6.5 75 2-76 38-116 (153)
42 KOG0122|consensus 99.4 1.5E-12 3.3E-17 97.2 7.5 73 2-74 191-267 (270)
43 KOG0105|consensus 99.4 1.2E-12 2.7E-17 95.4 6.3 75 2-76 8-83 (241)
44 KOG0131|consensus 99.3 1.1E-12 2.3E-17 94.8 5.0 74 1-74 10-87 (203)
45 KOG0117|consensus 99.3 3.7E-12 7.9E-17 101.3 7.1 73 3-75 86-163 (506)
46 KOG0108|consensus 99.3 3.6E-12 7.8E-17 100.8 6.7 78 2-79 20-102 (435)
47 KOG0415|consensus 99.3 6E-12 1.3E-16 98.7 5.5 74 2-75 241-318 (479)
48 KOG0148|consensus 99.3 1.8E-11 3.9E-16 92.9 7.7 69 2-72 166-234 (321)
49 KOG0145|consensus 99.3 2.6E-11 5.7E-16 92.3 8.4 73 2-74 280-356 (360)
50 KOG0127|consensus 99.3 7.8E-12 1.7E-16 101.6 5.6 78 1-78 6-88 (678)
51 KOG0127|consensus 99.3 1.7E-11 3.8E-16 99.6 7.6 74 2-75 294-377 (678)
52 KOG0109|consensus 99.2 9E-12 1.9E-16 95.3 5.0 69 2-74 80-148 (346)
53 KOG0144|consensus 99.2 1.2E-11 2.5E-16 98.4 4.2 73 3-75 127-205 (510)
54 KOG0110|consensus 99.2 4E-11 8.8E-16 99.0 7.1 72 3-74 518-596 (725)
55 KOG0124|consensus 99.2 1.9E-11 4E-16 96.5 4.9 72 3-74 116-191 (544)
56 KOG0145|consensus 99.2 5.3E-11 1.1E-15 90.6 6.9 72 3-74 44-119 (360)
57 KOG0126|consensus 99.2 6.5E-12 1.4E-16 91.2 1.2 72 3-74 38-113 (219)
58 KOG0130|consensus 99.2 5E-11 1.1E-15 83.5 5.1 75 2-76 74-154 (170)
59 KOG0147|consensus 99.1 6.1E-11 1.3E-15 95.7 5.5 72 3-74 281-356 (549)
60 KOG0131|consensus 99.1 5.4E-11 1.2E-15 86.0 4.4 74 3-77 99-178 (203)
61 KOG4206|consensus 99.1 1.6E-10 3.4E-15 84.9 5.9 74 2-75 11-89 (221)
62 KOG0109|consensus 99.1 2.5E-10 5.4E-15 87.5 5.9 71 2-76 4-74 (346)
63 KOG0153|consensus 99.0 1.6E-09 3.4E-14 84.2 7.0 72 2-76 230-302 (377)
64 KOG0226|consensus 99.0 5.3E-10 1.1E-14 84.3 3.7 68 3-70 193-264 (290)
65 KOG0132|consensus 98.9 2.6E-09 5.6E-14 89.5 6.8 75 2-78 423-497 (894)
66 KOG0144|consensus 98.9 2.9E-09 6.3E-14 84.9 5.8 74 2-75 36-116 (510)
67 KOG0106|consensus 98.9 1.6E-09 3.4E-14 79.4 3.8 69 3-75 4-72 (216)
68 KOG4661|consensus 98.9 4.7E-09 1E-13 86.6 6.0 73 2-74 407-483 (940)
69 KOG4205|consensus 98.8 2.7E-09 5.9E-14 81.5 4.1 73 1-74 7-83 (311)
70 KOG0146|consensus 98.8 9.5E-09 2.1E-13 78.7 4.6 76 2-77 287-366 (371)
71 KOG0533|consensus 98.7 6.4E-08 1.4E-12 72.0 6.7 76 2-77 85-163 (243)
72 KOG4209|consensus 98.6 6.9E-08 1.5E-12 71.0 5.3 72 2-74 103-178 (231)
73 KOG0116|consensus 98.6 9E-08 2E-12 75.7 5.9 72 2-74 290-365 (419)
74 KOG4205|consensus 98.6 8.1E-08 1.8E-12 73.5 5.3 73 2-75 99-175 (311)
75 KOG4208|consensus 98.5 3.2E-07 6.9E-12 67.3 6.3 70 4-73 53-127 (214)
76 KOG1996|consensus 98.5 2.4E-07 5.3E-12 71.5 5.8 66 9-74 295-365 (378)
77 KOG0151|consensus 98.5 2.2E-07 4.8E-12 77.8 5.6 72 2-73 176-254 (877)
78 KOG0147|consensus 98.5 2.9E-07 6.3E-12 74.7 5.8 65 8-73 461-525 (549)
79 KOG2202|consensus 98.5 4.9E-08 1.1E-12 73.2 1.2 63 15-77 83-149 (260)
80 KOG1190|consensus 98.4 9.4E-07 2E-11 70.5 7.6 76 2-78 299-375 (492)
81 KOG4212|consensus 98.4 5E-07 1.1E-11 72.8 5.3 70 2-72 538-607 (608)
82 KOG0146|consensus 98.4 3.9E-07 8.4E-12 69.9 4.2 73 3-75 22-100 (371)
83 KOG0120|consensus 98.4 9.8E-07 2.1E-11 71.3 6.7 63 12-74 421-490 (500)
84 PF11608 Limkain-b1: Limkain b 98.3 2.1E-06 4.5E-11 55.7 5.6 68 2-74 4-75 (90)
85 KOG4212|consensus 98.3 2.1E-06 4.5E-11 69.3 6.5 72 2-73 46-121 (608)
86 KOG0106|consensus 98.3 4.7E-07 1E-11 66.5 2.3 66 3-72 102-167 (216)
87 KOG1457|consensus 98.3 4.5E-06 9.7E-11 62.7 7.3 73 2-74 36-116 (284)
88 KOG4454|consensus 98.2 7.2E-07 1.6E-11 66.6 2.8 76 2-77 11-88 (267)
89 KOG0124|consensus 98.2 3.5E-06 7.6E-11 67.0 6.5 76 2-77 212-291 (544)
90 PF08777 RRM_3: RNA binding mo 98.2 2.8E-06 6.2E-11 55.6 5.0 73 2-76 3-80 (105)
91 KOG0110|consensus 98.2 1.9E-06 4E-11 71.8 4.3 73 3-75 616-692 (725)
92 KOG1457|consensus 98.1 2.1E-06 4.5E-11 64.4 3.2 62 2-63 212-273 (284)
93 KOG4660|consensus 98.0 4.2E-06 9E-11 68.2 2.5 67 2-69 77-143 (549)
94 KOG4210|consensus 97.9 4.6E-06 1E-10 62.9 2.0 71 3-74 188-262 (285)
95 KOG0112|consensus 97.9 2.4E-06 5.3E-11 72.8 0.4 77 7-83 18-96 (975)
96 KOG1548|consensus 97.8 5.5E-05 1.2E-09 59.3 6.6 74 2-75 136-220 (382)
97 PF14605 Nup35_RRM_2: Nup53/35 97.7 8.1E-05 1.7E-09 43.3 4.3 41 13-55 13-53 (53)
98 PF05172 Nup35_RRM: Nup53/35/4 97.6 0.00039 8.4E-09 45.5 6.9 56 13-69 18-84 (100)
99 KOG2314|consensus 97.5 0.00014 3E-09 60.2 4.8 59 12-70 76-138 (698)
100 PF08952 DUF1866: Domain of un 97.4 0.0011 2.4E-08 46.3 7.1 59 10-73 46-104 (146)
101 KOG1995|consensus 97.3 0.00025 5.4E-09 55.4 3.6 78 2-79 68-158 (351)
102 COG5175 MOT2 Transcriptional r 97.1 0.0013 2.8E-08 52.2 6.0 70 3-72 117-199 (480)
103 PF04059 RRM_2: RNA recognitio 97.1 0.0011 2.4E-08 43.2 4.4 51 12-64 17-71 (97)
104 KOG1456|consensus 97.1 0.0025 5.4E-08 51.0 7.0 70 4-74 291-361 (494)
105 KOG1456|consensus 97.0 0.0032 7E-08 50.4 7.4 71 3-74 124-197 (494)
106 KOG0120|consensus 97.0 0.00069 1.5E-08 55.0 3.4 72 3-74 292-367 (500)
107 KOG0115|consensus 96.9 0.00088 1.9E-08 50.8 3.2 79 2-80 33-118 (275)
108 KOG0112|consensus 96.9 0.0012 2.7E-08 56.8 4.1 71 3-75 458-530 (975)
109 PF11767 SET_assoc: Histone ly 96.8 0.0084 1.8E-07 36.7 6.3 57 10-71 10-66 (66)
110 PF04847 Calcipressin: Calcipr 96.7 0.0084 1.8E-07 42.9 6.9 65 11-77 6-72 (184)
111 KOG4211|consensus 96.5 0.0089 1.9E-07 48.7 6.4 75 7-83 17-93 (510)
112 KOG2068|consensus 96.4 0.0011 2.4E-08 51.4 0.5 70 4-73 81-160 (327)
113 PF08675 RNA_bind: RNA binding 96.1 0.038 8.2E-07 35.7 6.6 52 4-59 12-63 (87)
114 KOG1190|consensus 95.7 0.02 4.4E-07 46.2 4.8 71 4-74 154-226 (492)
115 KOG0128|consensus 95.6 0.0015 3.3E-08 55.8 -2.0 64 2-66 669-736 (881)
116 KOG0128|consensus 95.0 0.014 3E-07 50.2 1.8 73 1-73 737-812 (881)
117 PF03880 DbpA: DbpA RNA bindin 94.9 0.078 1.7E-06 32.1 4.7 55 14-73 15-74 (74)
118 KOG4676|consensus 94.5 0.071 1.5E-06 43.0 4.6 78 3-81 10-94 (479)
119 KOG4285|consensus 94.2 0.077 1.7E-06 41.5 4.3 50 17-69 213-262 (350)
120 KOG1855|consensus 94.0 0.054 1.2E-06 43.9 3.2 59 2-60 233-308 (484)
121 PF15023 DUF4523: Protein of u 93.4 0.26 5.7E-06 35.0 5.4 54 17-74 107-160 (166)
122 KOG2135|consensus 93.4 0.046 1E-06 44.7 1.7 58 14-74 387-444 (526)
123 KOG4206|consensus 93.0 0.52 1.1E-05 35.0 6.6 71 2-73 148-219 (221)
124 KOG4307|consensus 92.7 0.35 7.5E-06 41.7 6.0 64 9-72 876-943 (944)
125 KOG2193|consensus 92.3 0.12 2.6E-06 42.2 2.8 66 2-73 3-73 (584)
126 PF07576 BRAP2: BRCA1-associat 92.3 0.39 8.4E-06 31.8 4.8 53 13-65 26-81 (110)
127 KOG4210|consensus 92.1 0.066 1.4E-06 40.5 1.0 73 2-74 90-166 (285)
128 KOG4211|consensus 91.9 0.36 7.7E-06 39.6 5.0 64 7-71 110-177 (510)
129 KOG0129|consensus 91.0 0.53 1.2E-05 38.8 5.2 72 3-75 262-354 (520)
130 PF02714 DUF221: Domain of unk 90.6 0.27 5.8E-06 36.4 3.0 35 41-77 1-35 (325)
131 KOG4307|consensus 89.2 0.3 6.5E-06 42.0 2.4 72 2-73 436-511 (944)
132 KOG0129|consensus 88.2 1.4 3E-05 36.4 5.5 57 2-58 372-433 (520)
133 KOG4574|consensus 87.9 0.29 6.4E-06 42.6 1.6 62 11-74 309-372 (1007)
134 KOG0105|consensus 87.7 1.6 3.5E-05 32.4 5.2 66 3-71 118-185 (241)
135 PF10309 DUF2414: Protein of u 86.1 4.1 8.8E-05 24.6 5.5 51 3-58 8-62 (62)
136 KOG4660|consensus 84.0 0.95 2.1E-05 37.6 2.7 41 37-77 430-476 (549)
137 KOG2253|consensus 80.2 0.76 1.7E-05 38.9 0.9 67 1-72 41-107 (668)
138 KOG2591|consensus 80.0 3 6.6E-05 35.2 4.2 59 9-70 184-246 (684)
139 KOG3152|consensus 79.8 0.77 1.7E-05 35.1 0.7 65 3-67 77-157 (278)
140 KOG4849|consensus 79.2 2.1 4.6E-05 34.5 3.0 74 1-74 81-160 (498)
141 KOG0804|consensus 78.3 3.3 7.2E-05 34.0 3.9 63 3-65 77-142 (493)
142 PF14111 DUF4283: Domain of un 76.6 1.2 2.6E-05 29.1 0.9 60 10-74 31-90 (153)
143 PF02829 3H: 3H domain; Inter 75.9 11 0.00024 24.5 5.2 57 4-60 1-58 (98)
144 PF03467 Smg4_UPF3: Smg-4/UPF3 74.3 13 0.00028 26.1 5.6 62 4-65 11-82 (176)
145 PF13820 Nucleic_acid_bd: Puta 73.5 7 0.00015 27.3 4.0 48 11-60 20-67 (149)
146 PF03468 XS: XS domain; Inter 69.7 9.5 0.00021 25.3 3.9 35 15-50 32-68 (116)
147 TIGR01016 sucCoAbeta succinyl- 68.7 17 0.00038 27.9 5.7 45 14-61 28-79 (386)
148 PF08544 GHMP_kinases_C: GHMP 68.4 21 0.00046 20.8 5.0 42 17-59 39-80 (85)
149 KOG1365|consensus 66.9 16 0.00036 29.8 5.3 58 6-64 167-231 (508)
150 KOG4019|consensus 66.8 7 0.00015 28.6 3.0 38 37-74 50-88 (193)
151 PF08156 NOP5NT: NOP5NT (NUC12 64.1 2.5 5.5E-05 25.5 0.2 52 1-58 11-64 (67)
152 PF01762 Galactosyl_T: Galacto 58.7 8.7 0.00019 26.4 2.2 32 2-33 23-57 (195)
153 COG3403 Uncharacterized conser 57.9 11 0.00023 28.6 2.7 43 4-51 58-101 (257)
154 COG3797 Uncharacterized protei 56.8 45 0.00098 24.1 5.6 75 4-78 47-146 (178)
155 KOG2187|consensus 56.2 8.4 0.00018 32.1 2.0 38 37-74 62-99 (534)
156 PRK08559 nusG transcription an 55.9 46 0.00099 22.6 5.4 51 9-61 17-69 (153)
157 COG0724 RNA-binding proteins ( 55.8 13 0.00029 24.5 2.7 68 2-69 227-298 (306)
158 KOG1365|consensus 54.4 9.2 0.0002 31.2 1.9 68 7-74 287-360 (508)
159 TIGR02381 cspD cold shock doma 53.7 29 0.00062 20.6 3.6 44 35-78 10-58 (68)
160 KOG0226|consensus 51.7 6.3 0.00014 30.4 0.6 72 3-74 99-176 (290)
161 PF03439 Spt5-NGN: Early trans 51.5 37 0.0008 20.9 4.0 39 26-65 33-71 (84)
162 PRK14590 rimM 16S rRNA-process 51.2 25 0.00055 24.5 3.6 39 38-82 57-97 (171)
163 cd04489 ExoVII_LU_OBF ExoVII_L 49.0 20 0.00043 20.8 2.4 22 25-49 6-27 (78)
164 cd04458 CSP_CDS Cold-Shock Pro 48.2 35 0.00076 19.4 3.4 42 34-75 8-54 (65)
165 PRK13829 rimM 16S rRNA-process 47.3 31 0.00067 23.8 3.5 46 27-82 43-89 (162)
166 PF13689 DUF4154: Domain of un 46.0 33 0.00072 22.7 3.4 30 47-76 34-63 (145)
167 PRK13828 rimM 16S rRNA-process 44.8 38 0.00082 23.2 3.6 39 38-82 41-80 (161)
168 PRK11558 putative ssRNA endonu 44.8 42 0.0009 21.9 3.6 46 2-48 29-76 (97)
169 PLN02936 epsilon-ring hydroxyl 44.3 26 0.00055 27.4 3.0 41 12-57 37-77 (489)
170 PRK11901 hypothetical protein; 44.2 41 0.00089 26.5 4.0 60 3-63 245-309 (327)
171 TIGR00082 rbfA ribosome-bindin 43.6 49 0.0011 21.6 3.8 36 24-59 32-68 (114)
172 TIGR02273 16S_RimM 16S rRNA pr 43.2 40 0.00088 23.0 3.5 39 38-82 56-95 (165)
173 PRK14594 rimM 16S rRNA-process 43.0 38 0.00083 23.4 3.4 39 38-82 58-97 (166)
174 PF15513 DUF4651: Domain of un 42.6 29 0.00062 21.1 2.4 21 12-32 6-26 (62)
175 PRK11230 glycolate oxidase sub 42.2 53 0.0011 26.5 4.5 44 16-59 205-255 (499)
176 CHL00123 rps6 ribosomal protei 41.9 89 0.0019 19.7 4.8 55 3-57 13-81 (97)
177 KOG0684|consensus 41.8 13 0.00028 30.7 1.0 48 17-64 57-112 (486)
178 PF00067 p450: Cytochrome P450 41.2 45 0.00098 24.0 3.7 43 12-59 21-63 (463)
179 COG5594 Uncharacterized integr 40.9 31 0.00067 30.3 3.1 30 38-67 357-386 (827)
180 TIGR01033 DNA-binding regulato 39.6 73 0.0016 23.6 4.6 43 2-47 96-144 (238)
181 KOG2416|consensus 39.0 15 0.00033 31.3 1.1 69 3-73 447-519 (718)
182 PF00313 CSD: 'Cold-shock' DNA 38.8 21 0.00046 20.4 1.4 41 35-75 9-54 (66)
183 PF09707 Cas_Cas2CT1978: CRISP 38.7 83 0.0018 20.0 4.2 44 2-46 27-72 (86)
184 PF08206 OB_RNB: Ribonuclease 38.1 19 0.00041 20.6 1.1 12 36-47 6-17 (58)
185 PRK09507 cspE cold shock prote 37.7 34 0.00074 20.4 2.2 45 33-77 10-59 (69)
186 TIGR01873 cas_CT1978 CRISPR-as 37.7 70 0.0015 20.4 3.8 44 2-48 27-75 (87)
187 PRK00122 rimM 16S rRNA-process 37.6 55 0.0012 22.5 3.5 39 38-82 61-100 (172)
188 PF12654 DUF3786: Domain of un 37.5 56 0.0012 22.6 3.6 29 47-75 102-143 (179)
189 cd00018 AP2 DNA-binding domain 37.4 24 0.00053 20.0 1.5 22 37-58 24-45 (61)
190 cd02106 Band_7 The band 7 doma 37.1 79 0.0017 18.8 3.9 39 11-58 82-120 (121)
191 PRK05783 hypothetical protein; 37.1 1.1E+02 0.0024 19.3 5.0 47 12-65 22-71 (84)
192 PRK15464 cold shock-like prote 36.9 64 0.0014 19.5 3.4 44 34-77 12-60 (70)
193 PF02033 RBFA: Ribosome-bindin 36.4 78 0.0017 19.8 3.9 37 23-59 27-64 (104)
194 PLN02774 brassinosteroid-6-oxi 34.9 43 0.00093 25.8 2.9 36 17-57 56-91 (463)
195 PRK14592 rimM 16S rRNA-process 34.9 62 0.0013 22.2 3.4 39 38-82 53-92 (165)
196 TIGR03293 PhnG_redo phosphonat 34.4 84 0.0018 21.6 4.0 28 26-53 62-90 (144)
197 PRK10943 cold shock-like prote 34.4 75 0.0016 18.9 3.4 45 33-77 10-59 (69)
198 PRK09937 stationary phase/star 34.2 35 0.00075 20.8 1.9 43 35-77 10-57 (74)
199 smart00380 AP2 DNA-binding dom 34.2 31 0.00067 19.9 1.6 23 37-59 23-45 (64)
200 KOG0156|consensus 34.1 83 0.0018 25.5 4.5 50 13-68 48-97 (489)
201 PLN02805 D-lactate dehydrogena 33.3 70 0.0015 26.4 4.0 44 16-59 282-332 (555)
202 PLN03234 cytochrome P450 83B1; 32.8 74 0.0016 24.6 3.9 48 16-69 53-100 (499)
203 PF13421 Band_7_1: SPFH domain 32.5 79 0.0017 22.7 3.8 40 11-59 168-207 (211)
204 PF02222 ATP-grasp: ATP-grasp 32.4 77 0.0017 22.1 3.6 62 15-77 18-87 (172)
205 PF05573 NosL: NosL; InterPro 32.3 36 0.00078 23.0 1.9 26 38-63 114-139 (149)
206 cd04933 ACT_AK1-AT_1 ACT domai 32.0 27 0.00059 21.4 1.2 13 16-28 63-75 (78)
207 TIGR01161 purK phosphoribosyla 31.7 2.1E+02 0.0046 21.3 6.1 58 15-73 123-188 (352)
208 PRK12378 hypothetical protein; 31.1 1.4E+02 0.0029 22.2 4.9 42 2-46 93-140 (235)
209 COG0182 Predicted translation 31.1 90 0.0019 24.8 4.1 31 29-59 13-45 (346)
210 PRK13817 ribosome-binding fact 31.0 87 0.0019 20.7 3.5 35 24-60 31-70 (119)
211 PRK09120 p-hydroxycinnamoyl Co 30.8 51 0.0011 24.2 2.6 25 20-49 3-27 (275)
212 PRK00110 hypothetical protein; 30.6 1.3E+02 0.0029 22.3 4.8 43 2-47 96-144 (245)
213 cd01947 Guanosine_kinase_like 30.5 1.3E+02 0.0029 20.9 4.7 44 2-46 53-96 (265)
214 PRK15463 cold shock-like prote 30.3 1.3E+02 0.0027 18.0 4.0 44 34-77 12-60 (70)
215 PF07292 NID: Nmi/IFP 35 domai 30.1 90 0.002 19.9 3.4 33 41-73 1-34 (88)
216 cd06408 PB1_NoxR The PB1 domai 30.1 71 0.0015 20.3 2.9 47 8-59 22-68 (86)
217 PRK10354 RNA chaperone/anti-te 29.5 63 0.0014 19.2 2.4 44 33-76 11-59 (70)
218 PLN02655 ent-kaurene oxidase 29.4 1.1E+02 0.0024 23.6 4.4 48 14-67 22-69 (466)
219 smart00738 NGN In Spt5p, this 29.4 74 0.0016 19.4 2.9 24 38-61 59-82 (106)
220 PTZ00298 mevalonate kinase; Pr 29.2 1.3E+02 0.0029 22.5 4.7 42 17-59 266-307 (328)
221 PF06491 Disulph_isomer: Disul 29.1 38 0.00083 23.5 1.6 25 39-63 15-39 (136)
222 cd01942 ribokinase_group_A Rib 29.0 1.3E+02 0.0028 21.0 4.4 44 2-45 53-97 (279)
223 PRK14591 rimM 16S rRNA-process 28.9 88 0.0019 21.6 3.4 39 38-82 61-100 (169)
224 cd04917 ACT_AKiii-LysC-EC_2 AC 28.7 58 0.0013 18.2 2.1 46 17-63 18-63 (64)
225 cd04932 ACT_AKiii-LysC-EC_1 AC 28.6 59 0.0013 19.5 2.2 16 13-28 57-72 (75)
226 KOG3980|consensus 28.5 1.5E+02 0.0032 23.7 4.9 40 38-77 189-231 (361)
227 TIGR00387 glcD glycolate oxida 28.5 1.1E+02 0.0023 23.8 4.1 44 16-59 148-198 (413)
228 PF10567 Nab6_mRNP_bdg: RNA-re 28.2 46 0.00099 26.0 2.0 20 17-36 32-51 (309)
229 PRK14998 cold shock-like prote 27.2 39 0.00085 20.5 1.2 44 34-77 9-57 (73)
230 PRK03892 ribonuclease P protei 27.0 1.8E+02 0.0039 21.7 4.9 44 3-58 31-80 (216)
231 PLN00168 Cytochrome P450; Prov 26.8 1.3E+02 0.0027 23.7 4.3 48 15-68 61-108 (519)
232 cd01166 KdgK 2-keto-3-deoxyglu 26.8 1.9E+02 0.0041 20.3 4.9 43 2-44 48-91 (294)
233 PF07338 DUF1471: Protein of u 26.7 64 0.0014 18.6 2.0 14 44-57 13-26 (56)
234 KOG0660|consensus 26.6 43 0.00094 26.7 1.7 60 22-82 33-98 (359)
235 PF08383 Maf_N: Maf N-terminal 26.5 42 0.00091 18.2 1.1 10 47-56 24-33 (35)
236 PLN02971 tryptophan N-hydroxyl 26.5 92 0.002 24.7 3.5 47 16-68 83-130 (543)
237 PRK06019 phosphoribosylaminoim 26.5 2.7E+02 0.0059 21.1 6.0 58 15-73 125-190 (372)
238 PF08442 ATP-grasp_2: ATP-gras 26.0 99 0.0021 22.2 3.3 50 15-64 28-81 (202)
239 PRK00521 rbfA ribosome-binding 26.0 1.4E+02 0.0029 19.5 3.8 37 24-60 34-74 (120)
240 PF13773 DUF4170: Domain of un 25.4 53 0.0012 20.3 1.6 26 44-69 31-56 (69)
241 PRK09890 cold shock protein Cs 24.9 81 0.0018 18.8 2.3 43 34-76 12-59 (70)
242 PF13065 DUF3928: Protein of u 24.6 79 0.0017 20.3 2.3 21 38-59 71-91 (95)
243 KOG4410|consensus 24.1 1.9E+02 0.0041 23.0 4.8 45 3-48 333-377 (396)
244 PLN02500 cytochrome P450 90B1 23.8 80 0.0017 24.5 2.7 43 15-63 66-108 (490)
245 TIGR00512 salvage_mtnA S-methy 23.7 1.6E+02 0.0034 22.9 4.3 31 29-59 9-41 (331)
246 COG0858 RbfA Ribosome-binding 23.6 1.6E+02 0.0035 19.4 3.8 48 23-70 32-86 (118)
247 PF06754 PhnG: Phosphonate met 23.6 1.5E+02 0.0032 20.3 3.7 29 26-54 63-92 (146)
248 cd01941 YeiC_kinase_like YeiC- 23.5 1.9E+02 0.004 20.3 4.4 24 2-25 52-75 (288)
249 TIGR00405 L26e_arch ribosomal 23.5 97 0.0021 20.5 2.8 58 3-61 3-61 (145)
250 PRK11634 ATP-dependent RNA hel 23.3 1.2E+02 0.0026 25.3 3.7 37 37-74 525-561 (629)
251 PF02017 CIDE-N: CIDE-N domain 23.1 1.9E+02 0.0041 18.0 3.8 47 30-80 5-54 (78)
252 TIGR00264 alpha-NAC-related pr 23.1 60 0.0013 21.9 1.6 16 47-62 92-107 (116)
253 PF11823 DUF3343: Protein of u 22.7 78 0.0017 18.6 2.0 25 39-63 2-26 (73)
254 KOG2318|consensus 22.5 1.3E+02 0.0029 25.7 3.8 34 40-73 270-303 (650)
255 PF11181 YflT: Heat induced st 22.4 66 0.0014 20.2 1.7 34 43-76 4-37 (103)
256 COG0806 RimM RimM protein, req 22.2 1.8E+02 0.004 20.6 4.1 40 37-82 61-101 (174)
257 PF01709 Transcrip_reg: Transc 22.1 2.9E+02 0.0062 20.2 5.2 45 5-53 95-147 (234)
258 PRK14046 malate--CoA ligase su 22.0 2.5E+02 0.0054 22.0 5.1 25 37-63 57-81 (392)
259 PRK13818 ribosome-binding fact 21.8 1.8E+02 0.004 19.2 3.8 38 23-60 30-72 (121)
260 PF05036 SPOR: Sporulation rel 21.7 1.6E+02 0.0035 16.3 3.5 22 38-59 44-65 (76)
261 PLN03141 3-epi-6-deoxocathaste 21.6 83 0.0018 24.1 2.4 41 17-63 37-77 (452)
262 PF08796 DUF1797: Protein of u 21.6 1.4E+02 0.003 18.3 2.9 30 18-48 18-48 (67)
263 cd04922 ACT_AKi-HSDH-ThrA_2 AC 21.6 1.1E+02 0.0025 16.5 2.4 44 14-61 18-63 (66)
264 PF05278 PEARLI-4: Arabidopsis 21.4 39 0.00084 25.9 0.5 18 12-29 97-114 (269)
265 PRK10905 cell division protein 21.4 3.2E+02 0.007 21.6 5.5 58 4-62 248-310 (328)
266 COG1308 EGD2 Transcription fac 21.2 67 0.0015 21.9 1.6 16 47-62 98-113 (122)
267 PRK06369 nac nascent polypepti 21.2 69 0.0015 21.5 1.6 16 47-62 90-105 (115)
268 COG0150 PurM Phosphoribosylami 21.1 26 0.00056 27.8 -0.5 47 15-61 276-322 (345)
269 KOG4676|consensus 20.1 22 0.00047 29.1 -1.1 62 2-64 153-214 (479)
270 PLN02323 probable fructokinase 20.1 2.1E+02 0.0045 20.9 4.2 25 2-26 60-84 (330)
No 1
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.81 E-value=1.7e-19 Score=133.15 Aligned_cols=74 Identities=27% Similarity=0.340 Sum_probs=70.8
Q ss_pred eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCC
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHD 75 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g 75 (83)
+|||++|+.++.+++|++.|++||+|.+|+|++|. ++|||||.|.++|+|.+|+.+|||..|.||+|+|.....
T Consensus 271 ~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~~~ 348 (352)
T TIGR01661 271 CIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFKTN 348 (352)
T ss_pred EEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEccC
Confidence 59999999999999999999999999999999987 699999999999999999999999999999999998764
No 2
>KOG0107|consensus
Probab=99.80 E-value=1.4e-19 Score=129.68 Aligned_cols=77 Identities=19% Similarity=0.229 Sum_probs=73.0
Q ss_pred eEeeeecCCcchhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCCCcc
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDVDFE 79 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~~~e 79 (83)
-|||++|.++..+++|+.+|.+||+|.+|||.. .+.|||||+|++|.||++|+..++|+.|+|.+|.|++..|...+
T Consensus 12 kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvAr-nPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G~~r~ 88 (195)
T KOG0107|consen 12 KVYVGNLGSRATKRELERAFSKYGPLRSVWVAR-NPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTGRPRG 88 (195)
T ss_pred eEEeccCCCCcchHHHHHHHHhcCcceeEEEee-cCCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecCCccc
Confidence 389999999999999999999999999999988 78999999999999999999999999999999999999876553
No 3
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.79 E-value=8.1e-19 Score=119.84 Aligned_cols=75 Identities=28% Similarity=0.326 Sum_probs=71.1
Q ss_pred eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCC
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDV 76 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~ 76 (83)
+|||++|+.+..+++|++.|++||+|.+|+|+.|. ++|||||+|.++|+|++|+..|||..|.|++|+|+.+...
T Consensus 36 ~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a~~~ 114 (144)
T PLN03134 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPANDR 114 (144)
T ss_pred EEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeCCcC
Confidence 69999999999999999999999999999999875 6999999999999999999999999999999999998743
No 4
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.77 E-value=2.4e-18 Score=127.09 Aligned_cols=74 Identities=20% Similarity=0.300 Sum_probs=70.6
Q ss_pred eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCC
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHD 75 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g 75 (83)
+|||++|+.+..+++|++.|++||+|.+|+|+.|. ++|||||.|.++|||++|+..|||+.|.|++|.|..+..
T Consensus 5 ~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~~ 82 (352)
T TIGR01661 5 NLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYARP 82 (352)
T ss_pred EEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeecc
Confidence 79999999999999999999999999999999875 689999999999999999999999999999999998864
No 5
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.75 E-value=8.4e-18 Score=97.73 Aligned_cols=67 Identities=25% Similarity=0.418 Sum_probs=64.0
Q ss_pred EeeeecCCcchhhHHHHHhccCCceeEEEEeccC---CceEEEEEeCCchHHHHHHhhcCCceecCeeeE
Q psy11609 3 LFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG---GDRYGLVCFKKADDAEKAILGSHEKHFFGCKID 69 (83)
Q Consensus 3 lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~---~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~ 69 (83)
|||++++.+..+++|++.|++||+|.+++++.+. ++|+|||.|.++++|++|++.+||..+.|++|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 7999999999999999999999999999999963 599999999999999999999999999999985
No 6
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.73 E-value=9.6e-18 Score=132.07 Aligned_cols=76 Identities=20% Similarity=0.410 Sum_probs=72.2
Q ss_pred eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC---CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCCC
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG---GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDVD 77 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~---~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~~ 77 (83)
+|||+++.++..+++|++.|++||+|++|+|+.|. ++|||||+|.++|+|.+|+.+|||++|.|++|+|..|+.++
T Consensus 287 ~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a~~k~ 365 (562)
T TIGR01628 287 NLYVKNLDDTVTDEKLRELFSECGEITSAKVMLDEKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALAQRKE 365 (562)
T ss_pred EEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEECCCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEeccCcH
Confidence 69999999999999999999999999999999985 68999999999999999999999999999999999999754
No 7
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.71 E-value=5.9e-17 Score=93.33 Aligned_cols=56 Identities=32% Similarity=0.481 Sum_probs=51.7
Q ss_pred HHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEec
Q psy11609 17 LYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPY 73 (83)
Q Consensus 17 L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a 73 (83)
|+++|++||+|.++.+.... .++|||+|.++++|++|++.+||..+.|++|+|+.|
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 78999999999999998865 699999999999999999999999999999999875
No 8
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.69 E-value=1.2e-16 Score=119.40 Aligned_cols=73 Identities=15% Similarity=0.236 Sum_probs=69.9
Q ss_pred CeEeeeecCCcchhhHHHHHhccCCceeEEEEeccC-CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecC
Q psy11609 1 MALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG-GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYH 74 (83)
Q Consensus 1 ~~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~-~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~ 74 (83)
.||||++++.++.+++|++.|+.||+|.+|.|+.+. ++|||||+|+++++|+.|+ .+||..|.|++|.|++++
T Consensus 5 rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~Al-lLnG~~l~gr~V~Vt~a~ 78 (260)
T PLN03120 5 RTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETAL-LLSGATIVDQSVTITPAE 78 (260)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHH-HhcCCeeCCceEEEEecc
Confidence 389999999999999999999999999999999987 6899999999999999999 599999999999999997
No 9
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.69 E-value=6.7e-17 Score=123.67 Aligned_cols=73 Identities=18% Similarity=0.248 Sum_probs=69.8
Q ss_pred eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecC
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYH 74 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~ 74 (83)
+|||++|+.+..+++|++.|++||+|.+|+|+.|. ++|||||+|.++|+|++|++.|||..+.|++|.|..+.
T Consensus 109 ~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~a~ 185 (346)
T TIGR01659 109 NLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSYAR 185 (346)
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeeccc
Confidence 79999999999999999999999999999999986 58999999999999999999999999999999998765
No 10
>KOG0113|consensus
Probab=99.67 E-value=1.5e-16 Score=121.23 Aligned_cols=73 Identities=16% Similarity=0.305 Sum_probs=70.1
Q ss_pred eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecC
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYH 74 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~ 74 (83)
||||++|+.++.++.|+++|++||+|..+.+++|. |+|||||.|+++.|...|+.+++|++|+|+.|.|+.--
T Consensus 103 TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDvER 179 (335)
T KOG0113|consen 103 TLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDVER 179 (335)
T ss_pred eeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEecc
Confidence 99999999999999999999999999999999985 79999999999999999999999999999999998643
No 11
>smart00362 RRM_2 RNA recognition motif.
Probab=99.66 E-value=6.4e-16 Score=87.67 Aligned_cols=70 Identities=26% Similarity=0.357 Sum_probs=65.7
Q ss_pred eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC--CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEE
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG--GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVS 71 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~--~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~ 71 (83)
|||+.+++.....++|++.|++||+|..+.++.+. +.|+|||.|+++++|++|+..++|..+.|++|.|.
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 68999999999999999999999999999999865 67999999999999999999999999999999874
No 12
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.66 E-value=3.2e-16 Score=123.47 Aligned_cols=75 Identities=24% Similarity=0.307 Sum_probs=70.6
Q ss_pred CeEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCC
Q psy11609 1 MALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHD 75 (83)
Q Consensus 1 ~~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g 75 (83)
.+|||++|..+..+++|++.|++||+|.+|+|++|. +.|||||+|.+++||++|++.+|+..|.|++|+|..++.
T Consensus 1 ~sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~ 79 (562)
T TIGR01628 1 ASLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQR 79 (562)
T ss_pred CeEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccc
Confidence 489999999999999999999999999999999976 579999999999999999999999999999999987763
No 13
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.66 E-value=4.2e-16 Score=105.03 Aligned_cols=73 Identities=25% Similarity=0.360 Sum_probs=70.3
Q ss_pred eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecC
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYH 74 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~ 74 (83)
||||++|+.+..+++|+..|++||.|..+.+..|. ++|||||+|.++++|..|+..++|..|.|++|.|..++
T Consensus 117 ~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~ 193 (306)
T COG0724 117 TLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQ 193 (306)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeeccc
Confidence 79999999999999999999999999999999985 69999999999999999999999999999999999964
No 14
>KOG0148|consensus
Probab=99.66 E-value=1.3e-16 Score=120.71 Aligned_cols=78 Identities=24% Similarity=0.253 Sum_probs=72.7
Q ss_pred eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCCC
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDVD 77 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~~ 77 (83)
-+||+-|+.+.-.+.|++.|.+||+|+.++|++|. |+|||||.|-+-+||++|+..|||+||.+|+|+---|-+++
T Consensus 64 hvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATRKp 143 (321)
T KOG0148|consen 64 HVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATRKP 143 (321)
T ss_pred eEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeeccccccCc
Confidence 37999999999999999999999999999999998 79999999999999999999999999999999977776776
Q ss_pred cc
Q psy11609 78 FE 79 (83)
Q Consensus 78 ~e 79 (83)
.|
T Consensus 144 ~e 145 (321)
T KOG0148|consen 144 SE 145 (321)
T ss_pred cc
Confidence 54
No 15
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.66 E-value=5.4e-16 Score=114.94 Aligned_cols=75 Identities=17% Similarity=0.221 Sum_probs=70.7
Q ss_pred CeEeeeecCCcchhhHHHHHhccCCceeEEEEeccC-CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCC
Q psy11609 1 MALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG-GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDV 76 (83)
Q Consensus 1 ~~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~-~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~ 76 (83)
.||||++++.++.+++|++.|+.||+|.+|+|++|. ..+||||+|++|++|+.|+ .+||..|.|++|.|++|..+
T Consensus 6 ~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAl-lLnGa~l~d~~I~It~~~~y 81 (243)
T PLN03121 6 YTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAV-LLSGATIVDQRVCITRWGQY 81 (243)
T ss_pred eEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHH-hcCCCeeCCceEEEEeCccc
Confidence 389999999999999999999999999999999987 5789999999999999999 89999999999999998753
No 16
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.65 E-value=5.9e-16 Score=121.28 Aligned_cols=73 Identities=19% Similarity=0.266 Sum_probs=68.3
Q ss_pred eEeeeecCC-cchhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCC
Q psy11609 2 ALFIYVVSD-TSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHD 75 (83)
Q Consensus 2 ~lfv~k~~d-~~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g 75 (83)
+|||++|.+ ...++.|+..|++||.|++|+|+.+ ++|||||+|.++++|++|+++|||..|.|++|+|..+..
T Consensus 277 ~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~-~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~ 350 (481)
T TIGR01649 277 VLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKN-KKETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSKQ 350 (481)
T ss_pred EEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeC-CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccc
Confidence 799999997 5788889999999999999999987 579999999999999999999999999999999998854
No 17
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.65 E-value=1.3e-15 Score=89.96 Aligned_cols=67 Identities=21% Similarity=0.366 Sum_probs=61.7
Q ss_pred EeeeecCCcchhhHHHHHhccCCceeEEEEeccC---CceEEEEEeCCchHHHHHHhhcCCceecCeeeE
Q psy11609 3 LFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG---GDRYGLVCFKKADDAEKAILGSHEKHFFGCKID 69 (83)
Q Consensus 3 lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~---~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~ 69 (83)
|||++++.++.+++|.+.|+.||+|..+.+.... ++|+|||+|+++++|++|++..+|.++.|++|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 7999999999999999999999999999999975 489999999999999999999999999999985
No 18
>smart00361 RRM_1 RNA recognition motif.
Probab=99.64 E-value=8.8e-16 Score=92.64 Aligned_cols=60 Identities=18% Similarity=0.297 Sum_probs=49.0
Q ss_pred chhhHHHHHhccCCceeEEE-EeccC------CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEE
Q psy11609 12 SLKDGLYHEYKKHGKVSWVK-IIGQG------GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVS 71 (83)
Q Consensus 12 ~~~d~L~~eF~kfG~Itsv~-V~~d~------~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~ 71 (83)
.+.+.+.+++++||+|.+|. |..+. ++|||||+|.+++||.+|++.|||+++.|++|.+.
T Consensus 4 ~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~~ 70 (70)
T smart00361 4 DFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKAE 70 (70)
T ss_pred hHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEeC
Confidence 34444445555999999995 44432 59999999999999999999999999999999873
No 19
>KOG4207|consensus
Probab=99.64 E-value=2.7e-16 Score=115.73 Aligned_cols=76 Identities=21% Similarity=0.213 Sum_probs=72.4
Q ss_pred eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecC-CC
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYH-DV 76 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~-g~ 76 (83)
+|=|-+|+..+..|+|+..|+|||.|-.|.|..|. ++|||||-|-.-.||++|+++|+|++|+|++|.|++|. |.
T Consensus 15 SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~arygr 94 (256)
T KOG4207|consen 15 SLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMARYGR 94 (256)
T ss_pred eEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhhcCC
Confidence 68899999999999999999999999999999987 79999999999999999999999999999999999998 55
Q ss_pred C
Q psy11609 77 D 77 (83)
Q Consensus 77 ~ 77 (83)
+
T Consensus 95 ~ 95 (256)
T KOG4207|consen 95 P 95 (256)
T ss_pred C
Confidence 4
No 20
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.62 E-value=1.9e-15 Score=115.62 Aligned_cols=73 Identities=16% Similarity=0.251 Sum_probs=69.9
Q ss_pred eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecC
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYH 74 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~ 74 (83)
+|||++|..+..+++|.+.|++||.|.+|.++.+. ++|||||+|.++|+|.+|+..|||..|.|++|.|..++
T Consensus 188 ~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~ 264 (457)
T TIGR01622 188 KLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQ 264 (457)
T ss_pred EEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEcc
Confidence 79999999999999999999999999999999875 47999999999999999999999999999999999976
No 21
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.62 E-value=1.5e-15 Score=123.78 Aligned_cols=73 Identities=12% Similarity=0.184 Sum_probs=69.4
Q ss_pred eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecC
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYH 74 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~ 74 (83)
+|||++++.+..+++|++.|++||+|.+|+|+.|. ++|||||.|.++|+|++|++.|||..|.|++|.|....
T Consensus 109 rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp~ 185 (612)
T TIGR01645 109 RVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPS 185 (612)
T ss_pred EEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecccc
Confidence 69999999999999999999999999999999885 79999999999999999999999999999999998654
No 22
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.61 E-value=3.2e-15 Score=114.35 Aligned_cols=73 Identities=22% Similarity=0.276 Sum_probs=68.7
Q ss_pred eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCC
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHD 75 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g 75 (83)
||||++|+.+..+++|++.|++||+|.+|+|+.|. ++|||||.|.++|+|++|+. +||..+.|++|.|..++.
T Consensus 91 ~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~~~~~ 167 (457)
T TIGR01622 91 TVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQSSQA 167 (457)
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEeecch
Confidence 79999999999999999999999999999999975 59999999999999999995 999999999999988763
No 23
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.60 E-value=3.9e-15 Score=121.40 Aligned_cols=76 Identities=11% Similarity=0.179 Sum_probs=71.5
Q ss_pred eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCCC
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDVD 77 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~~ 77 (83)
+|||++++.+..+++|++.|++||+|.+|+|+.|. ++|||||.|++.++|.+|+..|||..+.|+.|+|..+..|.
T Consensus 206 rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi~pP 285 (612)
T TIGR01645 206 RIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVTPP 285 (612)
T ss_pred eEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecCCCc
Confidence 69999999999999999999999999999999975 58999999999999999999999999999999999888543
No 24
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.60 E-value=4.2e-15 Score=113.78 Aligned_cols=74 Identities=20% Similarity=0.231 Sum_probs=68.9
Q ss_pred eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecC--eeeEEEecCC
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFG--CKIDVSPYHD 75 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g--~~i~V~~a~g 75 (83)
+|||++|+.+..+++|++.|++||.|.+|+|+.|. ++|||||+|.++|+|++|++.+|+..+.| ++|.|.++..
T Consensus 195 ~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~a~~ 274 (346)
T TIGR01659 195 NLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRLAEE 274 (346)
T ss_pred eeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECCc
Confidence 69999999999999999999999999999999875 57999999999999999999999999876 7999998873
No 25
>PLN03213 repressor of silencing 3; Provisional
Probab=99.59 E-value=4.1e-15 Score=120.14 Aligned_cols=74 Identities=14% Similarity=0.236 Sum_probs=71.2
Q ss_pred CeEeeeecCCcchhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCc--hHHHHHHhhcCCceecCeeeEEEecC
Q psy11609 1 MALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKA--DDAEKAILGSHEKHFFGCKIDVSPYH 74 (83)
Q Consensus 1 ~~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~p--EdA~~A~~~~ng~~~~g~~i~V~~a~ 74 (83)
|.||||+|+.++.+++|...|+.||.|.+|.|++...+|||||.|..+ .++++|+..+||..+.|++|+|..|.
T Consensus 11 MRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETGRGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKAK 86 (759)
T PLN03213 11 VRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKAK 86 (759)
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccCCceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeecc
Confidence 789999999999999999999999999999999887899999999999 67999999999999999999999986
No 26
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.57 E-value=1.2e-14 Score=112.28 Aligned_cols=73 Identities=15% Similarity=0.127 Sum_probs=69.7
Q ss_pred eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecC
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYH 74 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~ 74 (83)
+|||++++.+..+++|.+.|++||.|.++.|+.+. ++|||||+|.++++|+.|+..|||..|.|++|.|..+.
T Consensus 297 ~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~ 373 (509)
T TIGR01642 297 RIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRAC 373 (509)
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECc
Confidence 69999999999999999999999999999999875 68999999999999999999999999999999999885
No 27
>smart00360 RRM RNA recognition motif.
Probab=99.56 E-value=1.6e-14 Score=81.38 Aligned_cols=67 Identities=22% Similarity=0.366 Sum_probs=60.3
Q ss_pred eeecCCcchhhHHHHHhccCCceeEEEEeccCC----ceEEEEEeCCchHHHHHHhhcCCceecCeeeEEE
Q psy11609 5 IYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGG----DRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVS 71 (83)
Q Consensus 5 v~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~~----~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~ 71 (83)
|.+++.+..+++|++.|++||+|..+++..+.+ .|+|||.|.++++|++|+..++|..+.|++|.|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 356677778888999999999999999998764 8999999999999999999999999999999874
No 28
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.56 E-value=1.5e-14 Score=113.38 Aligned_cols=73 Identities=18% Similarity=0.182 Sum_probs=68.1
Q ss_pred eEeeeecCCcchhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhh--cCCceecCeeeEEEecCCC
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILG--SHEKHFFGCKIDVSPYHDV 76 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~--~ng~~~~g~~i~V~~a~g~ 76 (83)
+|||++++.+..+++|++.|++||+|.+|+|+. ++|||||+|.++|+|++|+.. +|+..+.|++|+|..++..
T Consensus 4 vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~--~k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s~~~ 78 (481)
T TIGR01649 4 VVHVRNLPQDVVEADLVEALIPFGPVSYVMMLP--GKRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYSTSQ 78 (481)
T ss_pred EEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEC--CCCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEecCCc
Confidence 799999999999999999999999999999996 679999999999999999986 5889999999999998643
No 29
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.56 E-value=3.5e-14 Score=80.79 Aligned_cols=70 Identities=27% Similarity=0.413 Sum_probs=66.2
Q ss_pred eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC---CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEE
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG---GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVS 71 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~---~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~ 71 (83)
+|++.+++.+..+++|+..|+.||+|..+.+..+. +.++|||.|+++++|+.|++.++|..+.|+++.|.
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~ 73 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVE 73 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEe
Confidence 58999999999999999999999999999999876 48999999999999999999999999999999986
No 30
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.55 E-value=2.2e-14 Score=116.40 Aligned_cols=73 Identities=29% Similarity=0.401 Sum_probs=68.1
Q ss_pred eEeeeecCCcchhhHHHHHhccC--CceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCCCc
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKH--GKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDVDF 78 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kf--G~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~~~ 78 (83)
+|||++|+.+..+++|+++|++| |+|++|++++ +||||+|.++|+|++|+.+|||..|.|++|.|..+..++.
T Consensus 235 ~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~r----gfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~Akp~~~ 309 (578)
T TIGR01648 235 ILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIR----DYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLAKPVDK 309 (578)
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeec----CeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEccCCCc
Confidence 69999999999999999999999 9999999864 5999999999999999999999999999999999976544
No 31
>KOG0125|consensus
Probab=99.54 E-value=1.2e-14 Score=112.18 Aligned_cols=72 Identities=26% Similarity=0.288 Sum_probs=67.9
Q ss_pred EeeeecCCcchhhHHHHHhccCCceeEEEEeccC--CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecC
Q psy11609 3 LFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG--GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYH 74 (83)
Q Consensus 3 lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~--~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~ 74 (83)
|.|++..+.-.+.||+.-|.|||+|.+|.|+-.. |+|||||+|.+|+||++|..++||.++-||+|.|-.|-
T Consensus 99 LhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~AT 172 (376)
T KOG0125|consen 99 LHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNAT 172 (376)
T ss_pred eEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEeccc
Confidence 7899999999999999999999999999998743 89999999999999999999999999999999998875
No 32
>KOG0123|consensus
Probab=99.51 E-value=3.2e-14 Score=109.96 Aligned_cols=74 Identities=23% Similarity=0.363 Sum_probs=65.2
Q ss_pred EeeeecCCcchhhHHHHHhccCCceeEEEEeccC--CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCCC
Q psy11609 3 LFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG--GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDVD 77 (83)
Q Consensus 3 lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~--~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~~ 77 (83)
+||-.|..+....+|++-|+.||+|.||+|+.|. ++|| ||+|.++++|++|++.+||.++.|++|+|.+++..+
T Consensus 79 ~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~ 154 (369)
T KOG0123|consen 79 VFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENGSKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKE 154 (369)
T ss_pred eeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCCceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchh
Confidence 4665555555555699999999999999999987 7999 999999999999999999999999999999998643
No 33
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.50 E-value=8.1e-14 Score=107.70 Aligned_cols=62 Identities=19% Similarity=0.244 Sum_probs=56.8
Q ss_pred hhhHHHHHhccCCceeEEEEeccC-------CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecC
Q psy11609 13 LKDGLYHEYKKHGKVSWVKIIGQG-------GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYH 74 (83)
Q Consensus 13 ~~d~L~~eF~kfG~Itsv~V~~d~-------~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~ 74 (83)
+.++|+++|++||.|.+|+|+++. +.|+|||+|.++|+|++|+.+|||++|.|++|.|+.++
T Consensus 432 ~~edl~~~f~~~G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~~~gr~v~~~~~~ 500 (509)
T TIGR01642 432 IYEDVKTEFSKYGPLINIVIPRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGRKFNDRVVVAAFYG 500 (509)
T ss_pred HHHHHHHHHHhcCCeeEEEeeccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEeC
Confidence 567899999999999999999752 36899999999999999999999999999999999876
No 34
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.48 E-value=7.8e-14 Score=113.19 Aligned_cols=73 Identities=16% Similarity=0.224 Sum_probs=66.7
Q ss_pred CeEeeeecCCcchhhHHHHHhccCCceeEEEEeccC---CceEEEEEeCCchHHHHHHhhcCCceec-CeeeEEEec
Q psy11609 1 MALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG---GDRYGLVCFKKADDAEKAILGSHEKHFF-GCKIDVSPY 73 (83)
Q Consensus 1 ~~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~---~~g~afV~F~~pEdA~~A~~~~ng~~~~-g~~i~V~~a 73 (83)
.+|||++|..+..+++|++.|++||+|.+|+|+.|. ++|||||+|.++|+|++|++.|||..+. |+.|.|..+
T Consensus 59 ~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S 135 (578)
T TIGR01648 59 CEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCIS 135 (578)
T ss_pred CEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccccc
Confidence 379999999999999999999999999999999985 6999999999999999999999998884 787777654
No 35
>KOG0111|consensus
Probab=99.48 E-value=3.7e-14 Score=105.62 Aligned_cols=75 Identities=24% Similarity=0.314 Sum_probs=71.3
Q ss_pred eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCC
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDV 76 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~ 76 (83)
||||++|.|+..+..|-..|=.||+|+.|++..|- .+|||||+|...|||..|+.+||+..++||.|+|.+|.-+
T Consensus 12 tlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~AkP~ 90 (298)
T KOG0111|consen 12 TLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAKPE 90 (298)
T ss_pred eEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecCCc
Confidence 89999999999999999999999999999999876 4899999999999999999999999999999999999743
No 36
>KOG0149|consensus
Probab=99.48 E-value=5e-14 Score=104.40 Aligned_cols=71 Identities=20% Similarity=0.303 Sum_probs=67.0
Q ss_pred EeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecC
Q psy11609 3 LFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYH 74 (83)
Q Consensus 3 lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~ 74 (83)
+|||+|.-++.+++|++.|++||+|..++|+-|. |+|||||+|+++|.|++|+...| -.|+||+-+|.+|-
T Consensus 15 ifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~-piIdGR~aNcnlA~ 89 (247)
T KOG0149|consen 15 IFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPN-PIIDGRKANCNLAS 89 (247)
T ss_pred EEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCC-Ccccccccccchhh
Confidence 7999999999999999999999999999999987 79999999999999999998877 68999999998875
No 37
>KOG0123|consensus
Probab=99.47 E-value=3.1e-14 Score=110.01 Aligned_cols=75 Identities=17% Similarity=0.304 Sum_probs=66.8
Q ss_pred eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC---CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCC
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG---GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDV 76 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~---~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~ 76 (83)
+||+-+++.....+.|+..|+.||.|++++|+.+. +.|||||||++||+|++|+..|||+++.|++|+|+++|..
T Consensus 272 nl~vknld~~~~~e~L~~~f~~~GeI~s~kv~~~~~g~skG~gfV~fs~~eeA~~A~~~~n~~~i~~k~l~vav~qr~ 349 (369)
T KOG0123|consen 272 NLYVKNLDETLSDEKLRKIFSSFGEITSAKVMVDENGKSKGFGFVEFSSPEEAKKAMTEMNGRLIGGKPLYVAVAQRK 349 (369)
T ss_pred ccccccCccccchhHHHHHHhcccceeeEEEEeccCCCccceEEEEcCCHHHHHHHHHhhChhhhcCCchhhhHHhhh
Confidence 46666656666666699999999999999999976 6999999999999999999999999999999999999943
No 38
>KOG1548|consensus
Probab=99.43 E-value=3.1e-13 Score=104.69 Aligned_cols=66 Identities=24% Similarity=0.356 Sum_probs=63.0
Q ss_pred chhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCCC
Q psy11609 12 SLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDVD 77 (83)
Q Consensus 12 ~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~~ 77 (83)
.++++|.++++|||.|.+|.|...++.|++.|.|+++|+|+.|++.|+|++|+||+|..++|+|..
T Consensus 288 dlkedl~eec~K~G~v~~vvv~d~hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~DG~t 353 (382)
T KOG1548|consen 288 DLKEDLTEECEKFGQVRKVVVYDRHPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIWDGKT 353 (382)
T ss_pred HHHHHHHHHHHHhCCcceEEEeccCCCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEeCCcc
Confidence 478889999999999999999988999999999999999999999999999999999999999864
No 39
>KOG0117|consensus
Probab=99.39 E-value=8e-13 Score=105.07 Aligned_cols=74 Identities=27% Similarity=0.411 Sum_probs=68.9
Q ss_pred eEeeeecCCcchhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCCCcc
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDVDFE 79 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~~~e 79 (83)
.|||-+|.-+++++.|+.+|++||.|..|+..+| ||||+|.+-+||-+||.+|||+.|.|.+|.|.+|.-++-+
T Consensus 261 vLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD----YaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAKP~~k~ 334 (506)
T KOG0117|consen 261 VLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD----YAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAKPVDKK 334 (506)
T ss_pred eeeeeccchhhhHHHHHHHHHhccceEEeecccc----eeEEeecchHHHHHHHHHhcCceecCceEEEEecCChhhh
Confidence 4899999999999999999999999999999877 9999999999999999999999999999999999866544
No 40
>KOG0114|consensus
Probab=99.39 E-value=1.8e-12 Score=87.17 Aligned_cols=73 Identities=18% Similarity=0.162 Sum_probs=69.9
Q ss_pred EeeeecCCcchhhHHHHHhccCCceeEEEEeccC-CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCC
Q psy11609 3 LFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG-GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHD 75 (83)
Q Consensus 3 lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~-~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g 75 (83)
|||-+|+.+...++.++.|.|||+|..++|-.+. .+|-|||-|++-+||++|+++|+|--+.++.+.|-.||-
T Consensus 21 LyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq~ 94 (124)
T KOG0114|consen 21 LYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQP 94 (124)
T ss_pred EEEecCCccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecCH
Confidence 8999999999999999999999999999998877 499999999999999999999999999999999999984
No 41
>KOG0121|consensus
Probab=99.39 E-value=9.8e-13 Score=91.14 Aligned_cols=75 Identities=15% Similarity=0.144 Sum_probs=67.3
Q ss_pred eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCC
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDV 76 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~ 76 (83)
||||+++|.-+.++-+++.|++.|+|..|..-.|. +=||.||.|-+++||..|++-+||..++.++|.++.--|.
T Consensus 38 tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D~GF 116 (153)
T KOG0121|consen 38 TVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWDAGF 116 (153)
T ss_pred eEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeeccccc
Confidence 89999999999999999999999999955443454 6899999999999999999999999999999999876553
No 42
>KOG0122|consensus
Probab=99.38 E-value=1.5e-12 Score=97.25 Aligned_cols=73 Identities=18% Similarity=0.250 Sum_probs=68.3
Q ss_pred eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecC
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYH 74 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~ 74 (83)
||=|.+||.++.+++|.+.|.+||.|+.|.|.+|. ++|||||+|.+-|||.+|+..+||.=.+.-=|.|+.+.
T Consensus 191 tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEwsk 267 (270)
T KOG0122|consen 191 TVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWSK 267 (270)
T ss_pred eeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEecC
Confidence 67899999999999999999999999999999987 69999999999999999999999998888888888654
No 43
>KOG0105|consensus
Probab=99.37 E-value=1.2e-12 Score=95.44 Aligned_cols=75 Identities=17% Similarity=0.320 Sum_probs=70.1
Q ss_pred eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC-CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCC
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG-GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDV 76 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~-~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~ 76 (83)
++||++|..|..+.++.+.|.|||+|+.|.+-..+ +..||||.|++|.||++|+..-+|--++||.|.|+++.|-
T Consensus 8 ~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprgg 83 (241)
T KOG0105|consen 8 RIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRGG 83 (241)
T ss_pred eEEecCCCcchhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhcccccccCcceEEEEeccCC
Confidence 68999999999999999999999999999987665 5889999999999999999999999999999999999854
No 44
>KOG0131|consensus
Probab=99.35 E-value=1.1e-12 Score=94.82 Aligned_cols=74 Identities=22% Similarity=0.325 Sum_probs=70.5
Q ss_pred CeEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecC
Q psy11609 1 MALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYH 74 (83)
Q Consensus 1 ~~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~ 74 (83)
+||||+++.....++-|++.|-.-|+|.++.+.+|. .+||||++|.+.|||+-|+.-||...+.||||+|..+.
T Consensus 10 ~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas 87 (203)
T KOG0131|consen 10 ATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKAS 87 (203)
T ss_pred ceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEecc
Confidence 699999999999999999999999999999999987 59999999999999999999999999999999998876
No 45
>KOG0117|consensus
Probab=99.32 E-value=3.7e-12 Score=101.35 Aligned_cols=73 Identities=19% Similarity=0.285 Sum_probs=68.8
Q ss_pred EeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCcee-cCeeeEEEecCC
Q psy11609 3 LFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHF-FGCKIDVSPYHD 75 (83)
Q Consensus 3 lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~-~g~~i~V~~a~g 75 (83)
+||+++.-|..+|+|.-.|.|-|+|..+++|.|+ ++|||||+|++-|+|++|++.+|+..| -||.|.|..++.
T Consensus 86 VfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~Sva 163 (506)
T KOG0117|consen 86 VFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCVSVA 163 (506)
T ss_pred EEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEEeee
Confidence 8999999999999999999999999999999995 699999999999999999999999987 799999887764
No 46
>KOG0108|consensus
Probab=99.32 E-value=3.6e-12 Score=100.81 Aligned_cols=78 Identities=19% Similarity=0.280 Sum_probs=73.1
Q ss_pred eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecC-CC
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYH-DV 76 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~-g~ 76 (83)
++||++...+..++.|...|+..|.|.++++++|+ ++||||++|.++|+|..|++.+||..+.|++|+|..+. .+
T Consensus 20 ~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~~ 99 (435)
T KOG0108|consen 20 SVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNRK 99 (435)
T ss_pred ceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeecccccc
Confidence 58999999999999999999999999999999998 59999999999999999999999999999999999988 44
Q ss_pred Ccc
Q psy11609 77 DFE 79 (83)
Q Consensus 77 ~~e 79 (83)
+.|
T Consensus 100 ~~~ 102 (435)
T KOG0108|consen 100 NAE 102 (435)
T ss_pred hhH
Confidence 433
No 47
>KOG0415|consensus
Probab=99.27 E-value=6e-12 Score=98.65 Aligned_cols=74 Identities=16% Similarity=0.288 Sum_probs=70.6
Q ss_pred eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCC
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHD 75 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g 75 (83)
-|||-||++-+..++|.-.|++||+|.||.|++|. +-.||||.|.+.|+.++|+=.|+..+|+.+.|+|.++|.
T Consensus 241 VLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDFSQS 318 (479)
T KOG0415|consen 241 VLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDFSQS 318 (479)
T ss_pred eEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeehhhh
Confidence 49999999999999999999999999999999998 466999999999999999999999999999999999884
No 48
>KOG0148|consensus
Probab=99.26 E-value=1.8e-11 Score=92.94 Aligned_cols=69 Identities=16% Similarity=0.284 Sum_probs=65.2
Q ss_pred eEeeeecCCcchhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEe
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSP 72 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~ 72 (83)
|+|+++.+.-..+|.|++.|+.||+|..|+|.+ .+|||||-|++-|-|.+|+-+|||..+.|..+++.-
T Consensus 166 sVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk--~qGYaFVrF~tkEaAahAIv~mNntei~G~~VkCsW 234 (321)
T KOG0148|consen 166 SVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFK--DQGYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCSW 234 (321)
T ss_pred eEEeCCcCccccHHHHHHhcccCCcceEEEEec--ccceEEEEecchhhHHHHHHHhcCceeCceEEEEec
Confidence 799999999888888999999999999999999 599999999999999999999999999999999753
No 49
>KOG0145|consensus
Probab=99.26 E-value=2.6e-11 Score=92.26 Aligned_cols=73 Identities=23% Similarity=0.292 Sum_probs=68.8
Q ss_pred eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecC
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYH 74 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~ 74 (83)
-+||-+|+.|+-+..|++.|..||-|++|||++|. -+|||||+..+.+||--|+..+||-.+.+|-++|.+-.
T Consensus 280 ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFKt 356 (360)
T KOG0145|consen 280 CIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKT 356 (360)
T ss_pred EEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEec
Confidence 58999999999998899999999999999999998 39999999999999999999999999999999998643
No 50
>KOG0127|consensus
Probab=99.26 E-value=7.8e-12 Score=101.64 Aligned_cols=78 Identities=18% Similarity=0.330 Sum_probs=73.0
Q ss_pred CeEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecC-C
Q psy11609 1 MALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYH-D 75 (83)
Q Consensus 1 ~~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~-g 75 (83)
.||||+++..++..+.|.+.|+..|+|.-|.|+.+. .+|||||+|...||+++|+...++..|.||.|.|++|+ +
T Consensus 6 ~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~R 85 (678)
T KOG0127|consen 6 ATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKKR 85 (678)
T ss_pred ceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceeccccccccc
Confidence 399999999999999999999999999999999976 49999999999999999999999999999999999999 4
Q ss_pred CCc
Q psy11609 76 VDF 78 (83)
Q Consensus 76 ~~~ 78 (83)
+..
T Consensus 86 ~r~ 88 (678)
T KOG0127|consen 86 ARS 88 (678)
T ss_pred ccc
Confidence 443
No 51
>KOG0127|consensus
Probab=99.26 E-value=1.7e-11 Score=99.65 Aligned_cols=74 Identities=18% Similarity=0.238 Sum_probs=69.3
Q ss_pred eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhc-----CC-ceecCeeeEEE
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGS-----HE-KHFFGCKIDVS 71 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~-----ng-~~~~g~~i~V~ 71 (83)
||||-+|++|+.++.|.++|++||+|..+.++.+. |+|-|||.|+++.+|.+|+.+. .| -++.||+|.|.
T Consensus 294 tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR~Lkv~ 373 (678)
T KOG0127|consen 294 TVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGRLLKVT 373 (678)
T ss_pred eEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEeccEEeee
Confidence 89999999999999999999999999999999976 7999999999999999999987 45 68899999999
Q ss_pred ecCC
Q psy11609 72 PYHD 75 (83)
Q Consensus 72 ~a~g 75 (83)
+|-+
T Consensus 374 ~Av~ 377 (678)
T KOG0127|consen 374 LAVT 377 (678)
T ss_pred eccc
Confidence 9874
No 52
>KOG0109|consensus
Probab=99.24 E-value=9e-12 Score=95.31 Aligned_cols=69 Identities=29% Similarity=0.413 Sum_probs=66.3
Q ss_pred eEeeeecCCcchhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecC
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYH 74 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~ 74 (83)
+|+|+++++....++|+.-|.|||+|..|+|++| ||||.|...|||..|++.+||..|.|++++|++..
T Consensus 80 kl~vgNis~tctn~ElRa~fe~ygpviecdivkd----y~fvh~d~~eda~~air~l~~~~~~gk~m~vq~st 148 (346)
T KOG0109|consen 80 KLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD----YAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLST 148 (346)
T ss_pred ccccCCCCccccCHHHhhhhcccCCceeeeeecc----eeEEEEeeccchHHHHhcccccccccceeeeeeec
Confidence 6899999999999999999999999999999775 99999999999999999999999999999999875
No 53
>KOG0144|consensus
Probab=99.20 E-value=1.2e-11 Score=98.37 Aligned_cols=73 Identities=16% Similarity=0.192 Sum_probs=68.1
Q ss_pred EeeeecCCcchhhHHHHHhccCCceeEEEEeccC---CceEEEEEeCCchHHHHHHhhcCCc-eecC--eeeEEEecCC
Q psy11609 3 LFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG---GDRYGLVCFKKADDAEKAILGSHEK-HFFG--CKIDVSPYHD 75 (83)
Q Consensus 3 lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~---~~g~afV~F~~pEdA~~A~~~~ng~-~~~g--~~i~V~~a~g 75 (83)
|||+-++-.+.+.++++.|++||.|..|.|++|. ++|+|||+|++-|-|-.|+++|||. .+-| .||.|..|+.
T Consensus 127 LFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVkFADt 205 (510)
T KOG0144|consen 127 LFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVKFADT 205 (510)
T ss_pred hhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEEeccc
Confidence 8999999999999999999999999999999987 7999999999999999999999996 5555 5899999984
No 54
>KOG0110|consensus
Probab=99.20 E-value=4e-11 Score=98.97 Aligned_cols=72 Identities=21% Similarity=0.301 Sum_probs=67.7
Q ss_pred EeeeecCCcchhhHHHHHhccCCceeEEEEeccC-------CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecC
Q psy11609 3 LFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG-------GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYH 74 (83)
Q Consensus 3 lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~-------~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~ 74 (83)
||+-+++.++..++|..+|++.|.|-|+.|..-. |-|||||.|.+||+|+.|++.|+|..|+|.+|+|.++.
T Consensus 518 lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~ 596 (725)
T KOG0110|consen 518 LFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISE 596 (725)
T ss_pred hhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEecc
Confidence 8999999999999999999999999999887643 45999999999999999999999999999999999988
No 55
>KOG0124|consensus
Probab=99.20 E-value=1.9e-11 Score=96.46 Aligned_cols=72 Identities=13% Similarity=0.190 Sum_probs=67.6
Q ss_pred EeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecC
Q psy11609 3 LFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYH 74 (83)
Q Consensus 3 lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~ 74 (83)
+|||..+++--+|.|+..|..||+|.|+...-|+ .+|||||+|+-||-|.-|++.|||.|++||.|+|-.-+
T Consensus 116 vYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPs 191 (544)
T KOG0124|consen 116 VYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPS 191 (544)
T ss_pred eeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCC
Confidence 7999999999999999999999999999998887 59999999999999999999999999999999997544
No 56
>KOG0145|consensus
Probab=99.19 E-value=5.3e-11 Score=90.61 Aligned_cols=72 Identities=24% Similarity=0.300 Sum_probs=66.0
Q ss_pred EeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecC
Q psy11609 3 LFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYH 74 (83)
Q Consensus 3 lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~ 74 (83)
|.|--|....+.|+|+..|+..|+|.|||+++|. |-|||||.|-+|+||++|+..+||-.+-.+.|+|..|-
T Consensus 44 LIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyAR 119 (360)
T KOG0145|consen 44 LIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYAR 119 (360)
T ss_pred eeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEecc
Confidence 5556667777888899999999999999999997 68999999999999999999999999999999999874
No 57
>KOG0126|consensus
Probab=99.17 E-value=6.5e-12 Score=91.18 Aligned_cols=72 Identities=11% Similarity=0.256 Sum_probs=69.2
Q ss_pred EeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecC
Q psy11609 3 LFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYH 74 (83)
Q Consensus 3 lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~ 74 (83)
+|+|+++.+-++.+|--.|+.||.|..|.+++|. |+||||.||++....-=|+.++||..|.||.|+|.+--
T Consensus 38 Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv~ 113 (219)
T KOG0126|consen 38 IYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHVS 113 (219)
T ss_pred EEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeecc
Confidence 7999999999999999999999999999999997 79999999999999999999999999999999999865
No 58
>KOG0130|consensus
Probab=99.16 E-value=5e-11 Score=83.50 Aligned_cols=75 Identities=15% Similarity=0.267 Sum_probs=69.7
Q ss_pred eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecC--C
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYH--D 75 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~--g 75 (83)
-|||.....+..++++.+.|..||+|.++.+-.|. .+|||+|.|.+.++|+.|+.+|||..+.|.+|.|..+- |
T Consensus 74 Ii~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~Fv~g 153 (170)
T KOG0130|consen 74 IIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWCFVKG 153 (170)
T ss_pred EEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEEEecC
Confidence 48999999999999999999999999999998887 59999999999999999999999999999999998653 5
Q ss_pred C
Q psy11609 76 V 76 (83)
Q Consensus 76 ~ 76 (83)
|
T Consensus 154 p 154 (170)
T KOG0130|consen 154 P 154 (170)
T ss_pred C
Confidence 5
No 59
>KOG0147|consensus
Probab=99.14 E-value=6.1e-11 Score=95.72 Aligned_cols=72 Identities=22% Similarity=0.300 Sum_probs=68.8
Q ss_pred EeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecC
Q psy11609 3 LFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYH 74 (83)
Q Consensus 3 lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~ 74 (83)
|+|+.|.....++.|+.-|+.||+|-.|.++.|. ++|||||+|.++|+|++|+..|||-.|.|+.|.|.+-+
T Consensus 281 l~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~ 356 (549)
T KOG0147|consen 281 LYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVT 356 (549)
T ss_pred hhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEee
Confidence 7999999999999999999999999999999995 69999999999999999999999999999999998765
No 60
>KOG0131|consensus
Probab=99.13 E-value=5.4e-11 Score=86.02 Aligned_cols=74 Identities=19% Similarity=0.301 Sum_probs=64.3
Q ss_pred EeeeecCCcchhhH-HHHHhccCCceeEE-EEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCC
Q psy11609 3 LFIYVVSDTSLKDG-LYHEYKKHGKVSWV-KIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDV 76 (83)
Q Consensus 3 lfv~k~~d~~~~d~-L~~eF~kfG~Itsv-~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~ 76 (83)
|||++|.+ .+++. |++-|++||.|.+. +||+|+ ++|||||.|++-|-++.|+..|||+.+..+||.|+.+-..
T Consensus 99 lfvgNLd~-~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ya~k~ 177 (203)
T KOG0131|consen 99 LFVGNLDP-EVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVSYAFKK 177 (203)
T ss_pred ccccccCc-chhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEEEEEec
Confidence 78888777 55555 99999999999842 889877 5889999999999999999999999999999999998754
Q ss_pred C
Q psy11609 77 D 77 (83)
Q Consensus 77 ~ 77 (83)
+
T Consensus 178 ~ 178 (203)
T KOG0131|consen 178 D 178 (203)
T ss_pred C
Confidence 4
No 61
>KOG4206|consensus
Probab=99.11 E-value=1.6e-10 Score=84.94 Aligned_cols=74 Identities=19% Similarity=0.278 Sum_probs=67.5
Q ss_pred eEeeeecCCcchhhHHHH----HhccCCceeEEEEeccC-CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCC
Q psy11609 2 ALFIYVVSDTSLKDGLYH----EYKKHGKVSWVKIIGQG-GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHD 75 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~----eF~kfG~Itsv~V~~d~-~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g 75 (83)
||||-.++|..-+++|++ .|+.||+|..|.+.+.. .+|-|||.|++++-|..|+++|+|--|+|++++++.|.-
T Consensus 11 TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqyA~s 89 (221)
T KOG4206|consen 11 TLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQYAKS 89 (221)
T ss_pred eEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCcccCchhheecccC
Confidence 899999998877777555 99999999999998877 599999999999999999999999999999999998864
No 62
>KOG0109|consensus
Probab=99.07 E-value=2.5e-10 Score=87.46 Aligned_cols=71 Identities=27% Similarity=0.374 Sum_probs=67.7
Q ss_pred eEeeeecCCcchhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCC
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDV 76 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~ 76 (83)
-|||++|.+...++.|+..|.+||+|..|.|++. ||||+.++-.-|++|++++||-.|.|.-|+|+.+.-+
T Consensus 4 KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN----YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 4 KLFIGNLPREATEQELRSLFEQYGKVLECDIVKN----YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred chhccCCCcccchHHHHHHHHhhCceEeeeeecc----cceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 3899999999999999999999999999999875 9999999999999999999999999999999998765
No 63
>KOG0153|consensus
Probab=98.98 E-value=1.6e-09 Score=84.23 Aligned_cols=72 Identities=21% Similarity=0.364 Sum_probs=65.4
Q ss_pred eEeeeecCCcchhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCc-eecCeeeEEEecCCC
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEK-HFFGCKIDVSPYHDV 76 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~-~~~g~~i~V~~a~g~ 76 (83)
||||+++.|..++++|+.+|-+||.|.|+.|+. .+|-|||+|.+-+-|+.|..+...+ .|.|+.|.|. |-.+
T Consensus 230 tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~--~~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~-Wg~~ 302 (377)
T KOG0153|consen 230 TLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILP--RKGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIK-WGRP 302 (377)
T ss_pred EEEecccccchhHHHHHHHHhhcCCeeeEEeec--ccccceeeehhhHHHHHHHHhhcceeeecceEEEEE-eCCC
Confidence 899999999999999999999999999999987 6789999999999999999888776 5599999998 6543
No 64
>KOG0226|consensus
Probab=98.96 E-value=5.3e-10 Score=84.28 Aligned_cols=68 Identities=22% Similarity=0.278 Sum_probs=63.9
Q ss_pred EeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEE
Q psy11609 3 LFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDV 70 (83)
Q Consensus 3 lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V 70 (83)
+|-|-++.+...+-|-+.|+||=.-...+|++|. ++|||||.|++|.|+..|+++|||+.++.+||..
T Consensus 193 IfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpikl 264 (290)
T KOG0226|consen 193 IFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKL 264 (290)
T ss_pred eecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHh
Confidence 7888889999999999999999999999999987 7999999999999999999999999999999874
No 65
>KOG0132|consensus
Probab=98.92 E-value=2.6e-09 Score=89.52 Aligned_cols=75 Identities=13% Similarity=0.160 Sum_probs=70.3
Q ss_pred eEeeeecCCcchhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCCCc
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDVDF 78 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~~~ 78 (83)
||||+++.-...+++|...|+.||.|.||.++. ++|.|||+.-+-.||.+|+.+|+.--+.++.|+|.-|-|+-.
T Consensus 423 TLwvG~i~k~v~e~dL~~~feefGeiqSi~li~--~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g~G~ 497 (894)
T KOG0132|consen 423 TLWVGGIPKNVTEQDLANLFEEFGEIQSIILIP--PRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVGKGP 497 (894)
T ss_pred eeeeccccchhhHHHHHHHHHhcccceeEeecc--CCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeeccCCc
Confidence 999999999999999999999999999999987 899999999999999999999999999999999887775443
No 66
>KOG0144|consensus
Probab=98.89 E-value=2.9e-09 Score=84.89 Aligned_cols=74 Identities=20% Similarity=0.287 Sum_probs=68.1
Q ss_pred eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCc-eecC--eeeEEEecC
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEK-HFFG--CKIDVSPYH 74 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~-~~~g--~~i~V~~a~ 74 (83)
-|||+..+-...+.+|++.|++||.|.+|.|++|. ++|+.||.|.+.+||++|+.+++.+ .|-| -||.|.+|+
T Consensus 36 KlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqvk~Ad 115 (510)
T KOG0144|consen 36 KLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQVKYAD 115 (510)
T ss_pred hheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceeecccc
Confidence 38999999999999999999999999999999998 6999999999999999999999885 5655 689999998
Q ss_pred C
Q psy11609 75 D 75 (83)
Q Consensus 75 g 75 (83)
+
T Consensus 116 ~ 116 (510)
T KOG0144|consen 116 G 116 (510)
T ss_pred h
Confidence 7
No 67
>KOG0106|consensus
Probab=98.88 E-value=1.6e-09 Score=79.44 Aligned_cols=69 Identities=19% Similarity=0.303 Sum_probs=64.2
Q ss_pred EeeeecCCcchhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCC
Q psy11609 3 LFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHD 75 (83)
Q Consensus 3 lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g 75 (83)
+||+++.....+.+|++.|++||.|..|.+ ..|||||.|.++.||++|+..+||+.|.|-.+-|+++-+
T Consensus 4 v~vg~~~~~~~~~d~E~~f~~yg~~~d~~m----k~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~ 72 (216)
T KOG0106|consen 4 VYIGRLPYRARERDVERFFKGYGKIPDADM----KNGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARG 72 (216)
T ss_pred eeecccCCccchhHHHHHHhhcccccccee----ecccceeccCchhhhhcccchhcCceecceeeeeecccc
Confidence 799999999999999999999999998877 468999999999999999999999999999988887774
No 68
>KOG4661|consensus
Probab=98.85 E-value=4.7e-09 Score=86.60 Aligned_cols=73 Identities=26% Similarity=0.364 Sum_probs=67.8
Q ss_pred eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC-C---ceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecC
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG-G---DRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYH 74 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~-~---~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~ 74 (83)
.|+|.+|+..+.--+|...|+|||+|.-.+|+-.. + +-||||++++.+||.+|+.+++...|.|+-|.|+-+.
T Consensus 407 NlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaK 483 (940)
T KOG4661|consen 407 NLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAK 483 (940)
T ss_pred ceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeecc
Confidence 48999999999999999999999999999998753 2 5599999999999999999999999999999999887
No 69
>KOG4205|consensus
Probab=98.85 E-value=2.7e-09 Score=81.53 Aligned_cols=73 Identities=15% Similarity=0.249 Sum_probs=64.5
Q ss_pred CeEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecC
Q psy11609 1 MALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYH 74 (83)
Q Consensus 1 ~~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~ 74 (83)
+.||+++++-++.++.|++.|+.||+|+.|+||+|+ ++||+||+|.+|+....++.. .-..|+|+.|.+..|-
T Consensus 7 ~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~-~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 7 GKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNA-RTHKLDGRSVEPKRAV 83 (311)
T ss_pred cceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecc-cccccCCccccceecc
Confidence 469999999999999999999999999999999998 599999999999999988854 3356888888877664
No 70
>KOG0146|consensus
Probab=98.76 E-value=9.5e-09 Score=78.67 Aligned_cols=76 Identities=20% Similarity=0.259 Sum_probs=69.2
Q ss_pred eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCCC
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDVD 77 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~~ 77 (83)
.||+--|..+--+-+|..-|-.||.|.|.||..|+ |+-||||.|.||-.|+.|+++|||--|+=|+++|++---+|
T Consensus 287 NlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQLKRPkd 366 (371)
T KOG0146|consen 287 NLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKD 366 (371)
T ss_pred eEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhhhcCccc
Confidence 48888888888888899999999999999999998 79999999999999999999999999999999998754443
No 71
>KOG0533|consensus
Probab=98.67 E-value=6.4e-08 Score=72.00 Aligned_cols=76 Identities=14% Similarity=0.151 Sum_probs=71.2
Q ss_pred eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC---CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCCC
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG---GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDVD 77 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~---~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~~ 77 (83)
+|.|.+|...++.++|.+.|..||.+..|-|+++. +.|-|=|.|...+||..|+...||..++|++|.+++...|.
T Consensus 85 ~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~~~~ 163 (243)
T KOG0533|consen 85 KVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIISSPS 163 (243)
T ss_pred eeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEecCcc
Confidence 58899999999999999999999999999999988 57999999999999999999999999999999999887664
No 72
>KOG4209|consensus
Probab=98.61 E-value=6.9e-08 Score=71.01 Aligned_cols=72 Identities=14% Similarity=0.134 Sum_probs=66.4
Q ss_pred eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecC
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYH 74 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~ 74 (83)
.+|++++....+.+.+..+|+-||.|..|.|..|. ++|||||.|.+++.+.+|+. |||..|.|++|.|+++.
T Consensus 103 sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~~r 178 (231)
T KOG4209|consen 103 SVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTLKR 178 (231)
T ss_pred eEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeeeee
Confidence 47899999999999999999999999878887765 69999999999999999998 99999999999999876
No 73
>KOG0116|consensus
Probab=98.60 E-value=9e-08 Score=75.74 Aligned_cols=72 Identities=21% Similarity=0.272 Sum_probs=64.8
Q ss_pred eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecC
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYH 74 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~ 74 (83)
++||..|..++..+.|+++|++||.|....|.... ...||||.|.+-+.++.|+.+. =.+++|++++|+--.
T Consensus 290 ~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~As-p~~ig~~kl~Veek~ 365 (419)
T KOG0116|consen 290 GIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEAS-PLEIGGRKLNVEEKR 365 (419)
T ss_pred ceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcC-ccccCCeeEEEEecc
Confidence 58999999999999999999999999998887743 3489999999999999999886 678899999998765
No 74
>KOG4205|consensus
Probab=98.59 E-value=8.1e-08 Score=73.49 Aligned_cols=73 Identities=21% Similarity=0.317 Sum_probs=67.2
Q ss_pred eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCC
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHD 75 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g 75 (83)
.+||++++.+..+.+|+..|.+||.|+.+.+|.|. ++|||||.|.+.+.+++++ ...-..|.|+++.|-.|.-
T Consensus 99 kiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~-~~~f~~~~gk~vevkrA~p 175 (311)
T KOG4205|consen 99 KIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVT-LQKFHDFNGKKVEVKRAIP 175 (311)
T ss_pred EEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceec-ccceeeecCceeeEeeccc
Confidence 58999999999999999999999999999999987 5999999999999888886 6688899999999988874
No 75
>KOG4208|consensus
Probab=98.51 E-value=3.2e-07 Score=67.25 Aligned_cols=70 Identities=10% Similarity=0.221 Sum_probs=55.3
Q ss_pred eeeecCCcchhhHHHHHhccC-CceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEec
Q psy11609 4 FIYVVSDTSLKDGLYHEYKKH-GKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPY 73 (83)
Q Consensus 4 fv~k~~d~~~~d~L~~eF~kf-G~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a 73 (83)
++..+..-..+..+..-|..| |+|+.+++.+.. |+|||||.|.++|.|.=|-+.||+-+|+|+-+.|..-
T Consensus 53 ~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vm 127 (214)
T KOG4208|consen 53 YVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVM 127 (214)
T ss_pred eecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEe
Confidence 334444444455566777777 899977776643 7999999999999999999999999999999988654
No 76
>KOG1996|consensus
Probab=98.50 E-value=2.4e-07 Score=71.51 Aligned_cols=66 Identities=27% Similarity=0.295 Sum_probs=57.7
Q ss_pred CCcchhhHHHHHhccCCceeEEEEeccCC-----ceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecC
Q psy11609 9 SDTSLKDGLYHEYKKHGKVSWVKIIGQGG-----DRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYH 74 (83)
Q Consensus 9 ~d~~~~d~L~~eF~kfG~Itsv~V~~d~~-----~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~ 74 (83)
-|+.+++...+|+.|||+|..|.|+-+++ .---||.|+++|+|-+|+-.|||+.|+||-+...++.
T Consensus 295 vd~elede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn 365 (378)
T KOG1996|consen 295 VDEELEDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYN 365 (378)
T ss_pred ccHHHHHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheecc
Confidence 47888899999999999999999998873 2357999999999999999999999999988765543
No 77
>KOG0151|consensus
Probab=98.48 E-value=2.2e-07 Score=77.76 Aligned_cols=72 Identities=18% Similarity=0.239 Sum_probs=66.1
Q ss_pred eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC-------CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEec
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG-------GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPY 73 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~-------~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a 73 (83)
-|||++++...+++.|-..|.+||+|.+|+||-.. ++-.|||.|=+--||++|+..|+|+++.+.++...-.
T Consensus 176 Nlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K~gWg 254 (877)
T KOG0151|consen 176 NLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMKLGWG 254 (877)
T ss_pred ceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeeeeccc
Confidence 38999999999999999999999999999999865 3669999999999999999999999999999886544
No 78
>KOG0147|consensus
Probab=98.47 E-value=2.9e-07 Score=74.71 Aligned_cols=65 Identities=23% Similarity=0.263 Sum_probs=57.0
Q ss_pred cCCcchhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEec
Q psy11609 8 VSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPY 73 (83)
Q Consensus 8 ~~d~~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a 73 (83)
+-|..|+|++.+|+.|||+|.-|.|-.. |.|+-||-|.+.+.|-.|..+|||+||.||-|....-
T Consensus 461 n~d~eI~edV~Eec~k~g~v~hi~vd~n-s~g~VYvrc~s~~~A~~a~~alhgrWF~gr~Ita~~~ 525 (549)
T KOG0147|consen 461 NWDQEIREDVIEECGKHGKVCHIFVDKN-SAGCVYVRCPSAEAAGTAVKALHGRWFAGRMITAKYL 525 (549)
T ss_pred chhhHHHHHHHHHHHhcCCeeEEEEccC-CCceEEEecCcHHHHHHHHHHHhhhhhccceeEEEEe
Confidence 3477899999999999999987777443 4599999999999999999999999999999987653
No 79
>KOG2202|consensus
Probab=98.47 E-value=4.9e-08 Score=73.23 Aligned_cols=63 Identities=21% Similarity=0.297 Sum_probs=56.1
Q ss_pred hHHHHHhc-cCCceeEEEEeccCC---ceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCCC
Q psy11609 15 DGLYHEYK-KHGKVSWVKIIGQGG---DRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDVD 77 (83)
Q Consensus 15 d~L~~eF~-kfG~Itsv~V~~d~~---~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~~ 77 (83)
++++.|++ |||.|.+++|..... .|=.||.|+..|+|.+|++.+||+|+.|+||+.++..-.+
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pvT~ 149 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPVTD 149 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCcCc
Confidence 67888898 999999998877553 8999999999999999999999999999999988876443
No 80
>KOG1190|consensus
Probab=98.43 E-value=9.4e-07 Score=70.48 Aligned_cols=76 Identities=17% Similarity=0.291 Sum_probs=66.8
Q ss_pred eEeeeecCCcchhhH-HHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCCCc
Q psy11609 2 ALFIYVVSDTSLKDG-LYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDVDF 78 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~-L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~~~ 78 (83)
.|-|..|..+.+..+ |+-.|+-||+|-.|+|..... --|+|.+.++..|.=|+++++|..+.||+|+|.+..-++.
T Consensus 299 vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkk-d~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~v 375 (492)
T KOG1190|consen 299 VLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKK-DNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTNV 375 (492)
T ss_pred EEEEecCchhccchhHHHHHHhhhcceEEEEeeecCC-cceeeeecchhHHHHHHHHhhcceecCceEEEeeccCccc
Confidence 477888887776666 999999999999999988654 6899999999999999999999999999999999865443
No 81
>KOG4212|consensus
Probab=98.39 E-value=5e-07 Score=72.83 Aligned_cols=70 Identities=23% Similarity=0.289 Sum_probs=63.3
Q ss_pred eEeeeecCCcchhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEe
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSP 72 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~ 72 (83)
++||-++..|-+=+-|++.|..||.|-.+.||-.. +--|.|-|.+||||++|+..|||..+.|+.|.|..
T Consensus 538 qIiirNlP~dfTWqmlrDKfre~G~v~yadime~G-kskGVVrF~s~edAEra~a~Mngs~l~Gr~I~V~y 607 (608)
T KOG4212|consen 538 QIIIRNLPFDFTWQMLRDKFREIGHVLYADIMENG-KSKGVVRFFSPEDAERACALMNGSRLDGRNIKVTY 607 (608)
T ss_pred EEEEecCCccccHHHHHHHHHhccceehhhhhccC-CccceEEecCHHHHHHHHHHhccCcccCceeeeee
Confidence 68999999999999999999999999999996544 33349999999999999999999999999999975
No 82
>KOG0146|consensus
Probab=98.38 E-value=3.9e-07 Score=69.94 Aligned_cols=73 Identities=16% Similarity=0.256 Sum_probs=64.2
Q ss_pred EeeeecCCcchhhHHHHHhccCCceeEEEEeccC---CceEEEEEeCCchHHHHHHhhcCCc-eecC--eeeEEEecCC
Q psy11609 3 LFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG---GDRYGLVCFKKADDAEKAILGSHEK-HFFG--CKIDVSPYHD 75 (83)
Q Consensus 3 lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~---~~g~afV~F~~pEdA~~A~~~~ng~-~~~g--~~i~V~~a~g 75 (83)
||||-|+-..-+|+.++.|..||.|.+|.|.+-. ++|.|||-|++--||..|++.++|. .+-| ..+-|..++.
T Consensus 22 lfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK~ADT 100 (371)
T KOG0146|consen 22 LFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVKFADT 100 (371)
T ss_pred hhhhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEEeccc
Confidence 8999999999999999999999999999999854 7999999999999999999999994 4444 5566777763
No 83
>KOG0120|consensus
Probab=98.38 E-value=9.8e-07 Score=71.27 Aligned_cols=63 Identities=22% Similarity=0.286 Sum_probs=55.0
Q ss_pred chhhHHHHHhccCCceeEEEEecc-C------CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecC
Q psy11609 12 SLKDGLYHEYKKHGKVSWVKIIGQ-G------GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYH 74 (83)
Q Consensus 12 ~~~d~L~~eF~kfG~Itsv~V~~d-~------~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~ 74 (83)
.|.++++.+|+|||.|++|.|.++ . +-|=-||.|.++|++++|+.+|+|+.|.||.+-....+
T Consensus 421 eIlEdvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYyd 490 (500)
T KOG0120|consen 421 EILEDVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYD 490 (500)
T ss_pred HHHHHHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecC
Confidence 466778889999999999999998 3 36677999999999999999999999999998766543
No 84
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.30 E-value=2.1e-06 Score=55.67 Aligned_cols=68 Identities=24% Similarity=0.291 Sum_probs=47.5
Q ss_pred eEeeeecCCc----chhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecC
Q psy11609 2 ALFIYVVSDT----SLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYH 74 (83)
Q Consensus 2 ~lfv~k~~d~----~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~ 74 (83)
.|+|.+|..+ .++.-|++.+.-+| -+|+.- +.+-|+|-|.++|.|++|...|+|+.++|..|.|....
T Consensus 4 ~L~V~NLP~~~d~~~I~~RL~qLsdNCG----GkVl~v-~~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~~ 75 (90)
T PF11608_consen 4 LLYVSNLPTNKDPSSIKNRLRQLSDNCG----GKVLSV-SGGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFSP 75 (90)
T ss_dssp EEEEES--TTS-HHHHHHHHHHHHHTTT------EEE---TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS-
T ss_pred EEEEecCCCCCCHHHHHHHHHHHhhccC----CEEEEE-eCCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEcC
Confidence 4677777653 56777999999887 233222 46899999999999999999999999999999999885
No 85
>KOG4212|consensus
Probab=98.28 E-value=2.1e-06 Score=69.32 Aligned_cols=72 Identities=19% Similarity=0.241 Sum_probs=66.8
Q ss_pred eEeeeecCCcchhhHHHHHhc-cCCceeEEEEeccC---CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEec
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYK-KHGKVSWVKIIGQG---GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPY 73 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~-kfG~Itsv~V~~d~---~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a 73 (83)
.+|+.+...|..=++|++.++ |-|.|+=|.+.-|. ++|.|.|+|++||.++||++.||--.+.||+|.|.--
T Consensus 46 ~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd 121 (608)
T KOG4212|consen 46 SVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKED 121 (608)
T ss_pred eEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEecc
Confidence 379999999999999999998 88999999999887 5999999999999999999999999999999998643
No 86
>KOG0106|consensus
Probab=98.26 E-value=4.7e-07 Score=66.48 Aligned_cols=66 Identities=23% Similarity=0.366 Sum_probs=56.8
Q ss_pred EeeeecCCcchhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEe
Q psy11609 3 LFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSP 72 (83)
Q Consensus 3 lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~ 72 (83)
|++-+++.+.-.++|.+.|.++|.++.+.. ..++|||+|+..+||++|+..++|+.+.||.|.|..
T Consensus 102 ~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~----~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~~~ 167 (216)
T KOG0106|consen 102 LIVRNLSLRVSWQDLKDHFRPAGEVTYVDA----RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISVEK 167 (216)
T ss_pred eeeccchhhhhHHHHhhhhcccCCCchhhh----hccccceeehhhhhhhhcchhccchhhcCceeeecc
Confidence 455566677777899999999999975544 567999999999999999999999999999999843
No 87
>KOG1457|consensus
Probab=98.25 E-value=4.5e-06 Score=62.69 Aligned_cols=73 Identities=11% Similarity=0.130 Sum_probs=59.9
Q ss_pred eEeeeecCCcchhhHHHHHhccCCceeEEEEeccCC-----ceEEEEEeCCchHHHHHHhhcCCceec---CeeeEEEec
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGG-----DRYGLVCFKKADDAEKAILGSHEKHFF---GCKIDVSPY 73 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~~-----~g~afV~F~~pEdA~~A~~~~ng~~~~---g~~i~V~~a 73 (83)
||||.+|..|.-..+|+-.|..|---..+.+-.... +-+|||+|.+-.+|..|++++||..|+ +..+++++|
T Consensus 36 TLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhiElA 115 (284)
T KOG1457|consen 36 TLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHIELA 115 (284)
T ss_pred eeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEeeeh
Confidence 899999999999999888888764444455444332 479999999999999999999999994 788888888
Q ss_pred C
Q psy11609 74 H 74 (83)
Q Consensus 74 ~ 74 (83)
.
T Consensus 116 K 116 (284)
T KOG1457|consen 116 K 116 (284)
T ss_pred h
Confidence 6
No 88
>KOG4454|consensus
Probab=98.24 E-value=7.2e-07 Score=66.60 Aligned_cols=76 Identities=12% Similarity=0.050 Sum_probs=69.7
Q ss_pred eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC--CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCCC
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG--GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDVD 77 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~--~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~~ 77 (83)
||||+++.....++-|++.|-.=|+|.+|+|..+. ..-||||.|.+.-...-|++-|||..+++.+|.|++--|.+
T Consensus 11 tl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~kFa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r~G~s 88 (267)
T KOG4454|consen 11 TLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQKFAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLRCGNS 88 (267)
T ss_pred HHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCceeeeecccccchhhhhhhcccchhccchhhcccccCCC
Confidence 89999999999999999999999999999998765 34499999999999999999999999999999999987753
No 89
>KOG0124|consensus
Probab=98.22 E-value=3.5e-06 Score=67.02 Aligned_cols=76 Identities=11% Similarity=0.179 Sum_probs=68.5
Q ss_pred eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCCC
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDVD 77 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~~ 77 (83)
-+||.....|--+++|+..|..||+|.+|++.+++ .+||||++|.+....++|+..||=--++|.=++|--.-.|+
T Consensus 212 RiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~vTPP 291 (544)
T KOG0124|consen 212 RIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVTPP 291 (544)
T ss_pred eEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEecccccCCC
Confidence 37889999999999999999999999999999987 49999999999999999999999999999999987665443
No 90
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.21 E-value=2.8e-06 Score=55.60 Aligned_cols=73 Identities=21% Similarity=0.343 Sum_probs=45.0
Q ss_pred eEeeeecCCcchhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCC-----ceecCeeeEEEecCCC
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHE-----KHFFGCKIDVSPYHDV 76 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng-----~~~~g~~i~V~~a~g~ 76 (83)
-|.+.++..++..++|.+.|++||+|.-|.... ..--|+|-|.+|+.|++|+..+.- ..+.+.++.+++..|-
T Consensus 3 il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~--G~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~vLeGe 80 (105)
T PF08777_consen 3 ILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSR--GDTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLEVLEGE 80 (105)
T ss_dssp EEEEEE--SS--HHHHHHHT-SS--EEEEE--T--T-SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE---HH
T ss_pred EEEEecCCCCcCHHHHHHHHHhcCCcceEEecC--CCCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEEECCCH
Confidence 366677888888999999999999998666544 566999999999999999886653 4778888888877663
No 91
>KOG0110|consensus
Probab=98.18 E-value=1.9e-06 Score=71.85 Aligned_cols=73 Identities=14% Similarity=0.240 Sum_probs=65.5
Q ss_pred EeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCC
Q psy11609 3 LFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHD 75 (83)
Q Consensus 3 lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g 75 (83)
|.|-+++......+++..|..||.|.+|.|..-. .+|||||.|-+|.||.+|++++....+.||.+-.+-|.-
T Consensus 616 IlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA~~ 692 (725)
T KOG0110|consen 616 ILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWAKS 692 (725)
T ss_pred eeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehhcc
Confidence 5677788899999999999999999999998852 499999999999999999999999999999998776653
No 92
>KOG1457|consensus
Probab=98.12 E-value=2.1e-06 Score=64.44 Aligned_cols=62 Identities=19% Similarity=0.240 Sum_probs=57.9
Q ss_pred eEeeeecCCcchhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCcee
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHF 63 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~ 63 (83)
||||.+|+.+..+|.|+..|++|--.+-.+|...+.--+||+.|+.-|.|++||.++.|-.|
T Consensus 212 tlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~~g~~vaf~~~~~~~~at~am~~lqg~~~ 273 (284)
T KOG1457|consen 212 TLFIANLGPNCTEDELKQLLSRYPGFHILKIRARGGMPVAFADFEEIEQATDAMNHLQGNLL 273 (284)
T ss_pred hHhhhccCCCCCHHHHHHHHHhCCCceEEEEecCCCcceEeecHHHHHHHHHHHHHhhccee
Confidence 89999999999999999999999889989998877788999999999999999999998766
No 93
>KOG4660|consensus
Probab=97.97 E-value=4.2e-06 Score=68.16 Aligned_cols=67 Identities=18% Similarity=0.289 Sum_probs=60.4
Q ss_pred eEeeeecCCcchhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCceecCeeeE
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKID 69 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~ 69 (83)
||+|.++..+...++|...|+.||+|..|.- -...+|--||+|=+-.+|+.|++++|+..+.|++|.
T Consensus 77 ~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~-t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 77 TLVVFNLPRSVSNDTLLRIFGAYGEIREIRE-TPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred eEEEEecCCcCCHHHHHHHHHhhcchhhhhc-ccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 7999999999999999999999999997432 223689999999999999999999999999999998
No 94
>KOG4210|consensus
Probab=97.93 E-value=4.6e-06 Score=62.90 Aligned_cols=71 Identities=13% Similarity=0.243 Sum_probs=64.9
Q ss_pred EeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecC
Q psy11609 3 LFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYH 74 (83)
Q Consensus 3 lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~ 74 (83)
+||+.++++..+|+|+.+|..+|.|+++++.-+. ++|||+|+|++-.++..|+.. +...++|+|+.+.-..
T Consensus 188 ~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 262 (285)
T KOG4210|consen 188 FFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEEDE 262 (285)
T ss_pred eeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccccccCC
Confidence 4588999999999999999999999999998877 499999999999999999988 8999999999988766
No 95
>KOG0112|consensus
Probab=97.92 E-value=2.4e-06 Score=72.75 Aligned_cols=77 Identities=13% Similarity=0.008 Sum_probs=71.3
Q ss_pred ecCCcchhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCCCccc--cCC
Q psy11609 7 VVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDVDFEL--EFR 83 (83)
Q Consensus 7 k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~~~e~--e~~ 83 (83)
+..|..+++.++++|.++|+++.+.+.....++||.+.|+.-++|.+++..-.++.|+|+++.+.-|.|++.+. +||
T Consensus 18 R~vd~c~~~~~r~~~~~~gd~~~~~~~~k~~er~g~~~fr~~~~~~~~~~~~~~k~f~g~~~e~~~~~g~~~s~~~~~r 96 (975)
T KOG0112|consen 18 RIVDICVDWWDRSAVITLGDMEPANLLLKRMERVGRNNFREHKVAVDFCSDRFSKYFIGRGKENIEVAGRSSSPTSSRR 96 (975)
T ss_pred cccchhhhhcchhhhhhccccccchhhcchhhhcchhhhhhhcchhhhhhhhhhhhhccccccceeeecccCCCccccC
Confidence 45577788889999999999999999999999999999999999999999999999999999999999998887 665
No 96
>KOG1548|consensus
Probab=97.84 E-value=5.5e-05 Score=59.27 Aligned_cols=74 Identities=20% Similarity=0.188 Sum_probs=66.8
Q ss_pred eEeeeecCCcchhhHHHHHhccCCcee--------EEEEeccC---CceEEEEEeCCchHHHHHHhhcCCceecCeeeEE
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGKVS--------WVKIIGQG---GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDV 70 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~It--------sv~V~~d~---~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V 70 (83)
.+||.+|+.|.+-+...+.|+|+|-|- .||+.++. -+|=|++||-..|..+=|+..|++-.|.|++|+|
T Consensus 136 ~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~~~rV 215 (382)
T KOG1548|consen 136 SVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRGKKLRV 215 (382)
T ss_pred eEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccCcEEEE
Confidence 489999999999999999999999775 36666665 3899999999999999999999999999999999
Q ss_pred EecCC
Q psy11609 71 SPYHD 75 (83)
Q Consensus 71 ~~a~g 75 (83)
+-|+.
T Consensus 216 erAkf 220 (382)
T KOG1548|consen 216 ERAKF 220 (382)
T ss_pred ehhhh
Confidence 99983
No 97
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.70 E-value=8.1e-05 Score=43.31 Aligned_cols=41 Identities=20% Similarity=0.374 Sum_probs=33.7
Q ss_pred hhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHH
Q psy11609 13 LKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAI 55 (83)
Q Consensus 13 ~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~ 55 (83)
..+.+.+.|+.||+|+...+- ...-+.+|+|+++.+|++|+
T Consensus 13 ~~~~vl~~F~~fGeI~~~~~~--~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 13 LAEEVLEHFASFGEIVDIYVP--ESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred HHHHHHHHHHhcCCEEEEEcC--CCCcEEEEEECCHHHHHhhC
Confidence 345566689999999987774 35679999999999999995
No 98
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.60 E-value=0.00039 Score=45.55 Aligned_cols=56 Identities=11% Similarity=0.173 Sum_probs=41.8
Q ss_pred hhhHHHHHhccCCceeEEEEe-----------ccCCceEEEEEeCCchHHHHHHhhcCCceecCeeeE
Q psy11609 13 LKDGLYHEYKKHGKVSWVKII-----------GQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKID 69 (83)
Q Consensus 13 ~~d~L~~eF~kfG~Itsv~V~-----------~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~ 69 (83)
....+-++|++||+|.+..-+ ......+--|+|.+|.+|.+|++. ||+.|.|.=|-
T Consensus 18 ~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~-NG~i~~g~~mv 84 (100)
T PF05172_consen 18 ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQK-NGTIFSGSLMV 84 (100)
T ss_dssp GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTT-TTEEETTCEEE
T ss_pred HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHh-CCeEEcCcEEE
Confidence 455678899999999866411 111356889999999999999965 99999886554
No 99
>KOG2314|consensus
Probab=97.53 E-value=0.00014 Score=60.23 Aligned_cols=59 Identities=24% Similarity=0.191 Sum_probs=49.1
Q ss_pred chhhHHHHHhccCCceeEEEEeccC---CceEEEEEeCCchHHHHHHhhcCCceecC-eeeEE
Q psy11609 12 SLKDGLYHEYKKHGKVSWVKIIGQG---GDRYGLVCFKKADDAEKAILGSHEKHFFG-CKIDV 70 (83)
Q Consensus 12 ~~~d~L~~eF~kfG~Itsv~V~~d~---~~g~afV~F~~pEdA~~A~~~~ng~~~~g-~~i~V 70 (83)
-++-.|...|+|+|+|+.....-+. ..||.|+.|.++.+|++|+..+||+-|+- ....|
T Consensus 76 klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf~v 138 (698)
T KOG2314|consen 76 KLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTFFV 138 (698)
T ss_pred HHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccceEEe
Confidence 3555688899999999999888665 59999999999999999999999987753 34433
No 100
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.37 E-value=0.0011 Score=46.30 Aligned_cols=59 Identities=22% Similarity=0.359 Sum_probs=48.3
Q ss_pred CcchhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEec
Q psy11609 10 DTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPY 73 (83)
Q Consensus 10 d~~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a 73 (83)
|+.+-+.|-+.|+.||.+.=|+...+ -=.|+|++-+.|-+|+ .|+|..+.|+.|.|.+-
T Consensus 46 dd~l~~~ll~~~~~~GevvLvRfv~~----~mwVTF~dg~sALaal-s~dg~~v~g~~l~i~LK 104 (146)
T PF08952_consen 46 DDNLMDELLQKFAQYGEVVLVRFVGD----TMWVTFRDGQSALAAL-SLDGIQVNGRTLKIRLK 104 (146)
T ss_dssp -HHHHHHHHHHHHCCS-ECEEEEETT----CEEEEESSCHHHHHHH-HGCCSEETTEEEEEEE-
T ss_pred CHHHHHHHHHHHHhCCceEEEEEeCC----eEEEEECccHHHHHHH-ccCCcEECCEEEEEEeC
Confidence 34445578889999999998877663 6789999999999998 78999999999999873
No 101
>KOG1995|consensus
Probab=97.30 E-value=0.00025 Score=55.40 Aligned_cols=78 Identities=21% Similarity=0.241 Sum_probs=68.3
Q ss_pred eEeeeecCCcchhhHHHHHhccCCcee--------EEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeE
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGKVS--------WVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKID 69 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~It--------sv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~ 69 (83)
|+||-.+.+.+.++.|+..|..+|.|. .++|-.|. +++=|.|+|.+|--|+.|+.-.+++.|.|-+|.
T Consensus 68 ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~gn~ik 147 (351)
T KOG1995|consen 68 TIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCGNTIK 147 (351)
T ss_pred cceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccCCCch
Confidence 789999999999999999999999884 34444444 699999999999999999999999999999999
Q ss_pred EEecC-CCCcc
Q psy11609 70 VSPYH-DVDFE 79 (83)
Q Consensus 70 V~~a~-g~~~e 79 (83)
|.+|. .+++|
T Consensus 148 vs~a~~r~~ve 158 (351)
T KOG1995|consen 148 VSLAERRTGVE 158 (351)
T ss_pred hhhhhhccCcc
Confidence 99998 55444
No 102
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.12 E-value=0.0013 Score=52.15 Aligned_cols=70 Identities=11% Similarity=0.231 Sum_probs=54.9
Q ss_pred EeeeecCCcchhhH----HH--HHhccCCceeEEEEeccCC-----ce-EE-EEEeCCchHHHHHHhhcCCceecCeeeE
Q psy11609 3 LFIYVVSDTSLKDG----LY--HEYKKHGKVSWVKIIGQGG-----DR-YG-LVCFKKADDAEKAILGSHEKHFFGCKID 69 (83)
Q Consensus 3 lfv~k~~d~~~~d~----L~--~eF~kfG~Itsv~V~~d~~-----~g-~a-fV~F~~pEdA~~A~~~~ng~~~~g~~i~ 69 (83)
+||.+++...-.++ |. +-|..||+|.++.|-+.-+ .+ +| ||+|.+-|||.+|+.+.+|.+++||-|+
T Consensus 117 vYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr~lk 196 (480)
T COG5175 117 VYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGRVLK 196 (480)
T ss_pred eEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCceEe
Confidence 56777776655554 43 3799999999998877441 22 32 9999999999999999999999999998
Q ss_pred EEe
Q psy11609 70 VSP 72 (83)
Q Consensus 70 V~~ 72 (83)
.+.
T Consensus 197 atY 199 (480)
T COG5175 197 ATY 199 (480)
T ss_pred eec
Confidence 653
No 103
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=97.07 E-value=0.0011 Score=43.24 Aligned_cols=51 Identities=18% Similarity=0.141 Sum_probs=38.3
Q ss_pred chhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceec
Q psy11609 12 SLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFF 64 (83)
Q Consensus 12 ~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~ 64 (83)
.+.+.|-+.| .|..-=+.+.-|. +.|||||.|.+|+.|.+-.+.++|+...
T Consensus 17 ~L~~~l~~~~--~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~ 71 (97)
T PF04059_consen 17 MLIQILDEHF--KGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWP 71 (97)
T ss_pred HHHHHHHHhc--cCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccc
Confidence 3334444443 3666667777665 5999999999999999999999998663
No 104
>KOG1456|consensus
Probab=97.06 E-value=0.0025 Score=51.01 Aligned_cols=70 Identities=20% Similarity=0.301 Sum_probs=59.8
Q ss_pred eeeecCCcchhhH-HHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecC
Q psy11609 4 FIYVVSDTSLKDG-LYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYH 74 (83)
Q Consensus 4 fv~k~~d~~~~d~-L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~ 74 (83)
-|-+|.-..+.-+ |+..|=-||.|..|+-|+. ..|-|.|..-+++..++|++++|+.-++|.+|.|..+.
T Consensus 291 MVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkT-k~gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~Sk 361 (494)
T KOG1456|consen 291 MVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKT-KPGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCVSK 361 (494)
T ss_pred EEEeccccccchhhhhhhhhhcCceeeEEEeec-ccceeEEEcCcHHHHHHHHHHhccCccccceEEEeecc
Confidence 3445554444444 9999999999999999996 57899999999999999999999999999999998765
No 105
>KOG1456|consensus
Probab=97.03 E-value=0.0032 Score=50.39 Aligned_cols=71 Identities=18% Similarity=0.309 Sum_probs=59.7
Q ss_pred EeeeecCCcchhhH-HHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCceec--CeeeEEEecC
Q psy11609 3 LFIYVVSDTSLKDG-LYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFF--GCKIDVSPYH 74 (83)
Q Consensus 3 lfv~k~~d~~~~d~-L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~--g~~i~V~~a~ 74 (83)
||-.-|..-.|.-| |+..+...|+|-.|.|++- ..==|.|+|.+-+-|++|..+|||.-|. =|.|+|+.|.
T Consensus 124 l~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk-ngVQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIeyAk 197 (494)
T KOG1456|consen 124 LFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK-NGVQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIEYAK 197 (494)
T ss_pred EEEeecCccccchhhhhhhcCCCCceEEEEEEec-cceeeEEeechhHHHHHHHhhcccccccccceeEEEEecC
Confidence 56666666666666 9999999999999999996 3346999999999999999999998773 3899999886
No 106
>KOG0120|consensus
Probab=96.99 E-value=0.00069 Score=55.05 Aligned_cols=72 Identities=11% Similarity=0.140 Sum_probs=63.7
Q ss_pred EeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecC
Q psy11609 3 LFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYH 74 (83)
Q Consensus 3 lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~ 74 (83)
+|++.+.-.-+++.+.+.-+.||++..-..+.+. ++||||-+|.+|--.+.|+..+||+-+.+++|.|+.|-
T Consensus 292 i~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~ 367 (500)
T KOG0120|consen 292 IFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAI 367 (500)
T ss_pred hhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhh
Confidence 4677777777777788888899999988888876 69999999999999999999999999999999998874
No 107
>KOG0115|consensus
Probab=96.91 E-value=0.00088 Score=50.81 Aligned_cols=79 Identities=22% Similarity=0.249 Sum_probs=67.8
Q ss_pred eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC---CceEEEEEeCCchHHHHHHhhcCCc----eecCeeeEEEecC
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG---GDRYGLVCFKKADDAEKAILGSHEK----HFFGCKIDVSPYH 74 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~---~~g~afV~F~~pEdA~~A~~~~ng~----~~~g~~i~V~~a~ 74 (83)
.|+|.+++.-.-.|.|.++|+.||+|.+..|.-|. +-|=++|.|.+--.|.+|.+..+-. ...|+|.-|++.+
T Consensus 33 ~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP~e 112 (275)
T KOG0115|consen 33 ELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVEPME 112 (275)
T ss_pred eEEEEecchhhhhHHHHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCChhh
Confidence 58999999999999999999999999988777765 5789999999999999999988544 4467899999998
Q ss_pred CCCccc
Q psy11609 75 DVDFEL 80 (83)
Q Consensus 75 g~~~e~ 80 (83)
-++.++
T Consensus 113 q~~d~~ 118 (275)
T KOG0115|consen 113 QPDDND 118 (275)
T ss_pred ccCCCC
Confidence 777665
No 108
>KOG0112|consensus
Probab=96.88 E-value=0.0012 Score=56.76 Aligned_cols=71 Identities=17% Similarity=0.158 Sum_probs=62.3
Q ss_pred EeeeecCCcchhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCceecC--eeeEEEecCC
Q psy11609 3 LFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFG--CKIDVSPYHD 75 (83)
Q Consensus 3 lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~g--~~i~V~~a~g 75 (83)
|+++++..=+-...|..+|..||.|.. |-+++.+-||+|-|++++-|+.|++.|.|.-|+| ++|+|.++.-
T Consensus 458 ~~sgglg~w~p~~~l~r~fd~fGpir~--Idy~hgq~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvdla~~ 530 (975)
T KOG0112|consen 458 LQSGGLGPWSPVSRLNREFDRFGPIRI--IDYRHGQPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVDLASP 530 (975)
T ss_pred eccCCCCCCChHHHHHHHhhccCccee--eecccCCcceeeecccCccchhhHHHHhcCcCCCCCcccccccccC
Confidence 678888888888889999999999996 4456688899999999999999999999999977 7789988873
No 109
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=96.79 E-value=0.0084 Score=36.67 Aligned_cols=57 Identities=11% Similarity=0.252 Sum_probs=45.5
Q ss_pred CcchhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCceecCeeeEEE
Q psy11609 10 DTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVS 71 (83)
Q Consensus 10 d~~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~ 71 (83)
....-++++...++|+-.. |.. ...|| ||.|.+.+||+++..+.||+.+++..|..+
T Consensus 10 ~~~~v~d~K~~Lr~y~~~~-I~~---d~tGf-YIvF~~~~Ea~rC~~~~~~~~~f~y~m~M~ 66 (66)
T PF11767_consen 10 HGVTVEDFKKRLRKYRWDR-IRD---DRTGF-YIVFNDSKEAERCFRAEDGTLFFTYRMQME 66 (66)
T ss_pred CCccHHHHHHHHhcCCcce-EEe---cCCEE-EEEECChHHHHHHHHhcCCCEEEEEEEEeC
Confidence 3445577899999999655 553 34565 799999999999999999999999988753
No 110
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=96.73 E-value=0.0084 Score=42.92 Aligned_cols=65 Identities=15% Similarity=0.039 Sum_probs=47.3
Q ss_pred cchhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcC--CceecCeeeEEEecCCCC
Q psy11609 11 TSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSH--EKHFFGCKIDVSPYHDVD 77 (83)
Q Consensus 11 ~~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~n--g~~~~g~~i~V~~a~g~~ 77 (83)
...++.|++.|..|+++.+..+.+ +=|=..|.|.++++|..|+..++ +..+.|..+.|-.+|...
T Consensus 6 ~~~~~~l~~l~~~~~~~~~~~~L~--sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~~ 72 (184)
T PF04847_consen 6 PDNLAELEELFSTYDPPVQFSPLK--SFRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPTP 72 (184)
T ss_dssp ---HHHHHHHHHTT-SS-EEEEET--TTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----SS
T ss_pred hhhHHHHHHHHHhcCCceEEEEcC--CCCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccccc
Confidence 456678999999999998776655 66668899999999999999999 999999999998887443
No 111
>KOG4211|consensus
Probab=96.50 E-value=0.0089 Score=48.71 Aligned_cols=75 Identities=15% Similarity=0.160 Sum_probs=63.8
Q ss_pred ecCCcchhhHHHHHhccCCceeEEEEeccC--CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCCCccccCC
Q psy11609 7 VVSDTSLKDGLYHEYKKHGKVSWVKIIGQG--GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDVDFELEFR 83 (83)
Q Consensus 7 k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~--~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~~~e~e~~ 83 (83)
.|.-..+.++|.+-|+-.+ |+++++.++. +.|=|||.|.+.||+++|++ .+.+++..|=|.|=.+.+.+.+-.||
T Consensus 17 GLPwsat~~ei~~Ff~~~~-I~~~~~~r~~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~RYIEVf~~~~~e~d~~~~ 93 (510)
T KOG4211|consen 17 GLPWSATEKEILDFFSNCG-IENLEIPRRNGRPSGEAYVEFTSEEDVEKALK-KDRESMGHRYIEVFTAGGAEADWVMR 93 (510)
T ss_pred CCCccccHHHHHHHHhcCc-eeEEEEeccCCCcCcceEEEeechHHHHHHHH-hhHHHhCCceEEEEccCCcccccccc
Confidence 4677889999999999998 8889999884 68899999999999999984 58889999999998887777654443
No 112
>KOG2068|consensus
Probab=96.36 E-value=0.0011 Score=51.41 Aligned_cols=70 Identities=11% Similarity=0.080 Sum_probs=54.0
Q ss_pred eeeecCCcchhhH-HHH--HhccCCceeEEEEeccCC-------ceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEec
Q psy11609 4 FIYVVSDTSLKDG-LYH--EYKKHGKVSWVKIIGQGG-------DRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPY 73 (83)
Q Consensus 4 fv~k~~d~~~~d~-L~~--eF~kfG~Itsv~V~~d~~-------~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a 73 (83)
|+..++++.-.+. |.+ -|..||.|.+|.+.++.+ -=-++|+|...|||..|+..-+|-..+|+.+.....
T Consensus 81 yvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka~~g 160 (327)
T KOG2068|consen 81 YVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKASLG 160 (327)
T ss_pred hhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHHhhC
Confidence 4555665554444 665 688999999999999762 224899999999999999999999999988654443
No 113
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=96.14 E-value=0.038 Score=35.74 Aligned_cols=52 Identities=15% Similarity=0.241 Sum_probs=38.5
Q ss_pred eeeecCCcchhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcC
Q psy11609 4 FIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSH 59 (83)
Q Consensus 4 fv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~n 59 (83)
|...-..+=-..+|.+.|+.||.|.=-+| ++-.|||...+.+.|+.|+..++
T Consensus 12 FhltFPkeWK~~DI~qlFspfG~I~VsWi----~dTSAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 12 FHLTFPKEWKTSDIYQLFSPFGQIYVSWI----NDTSAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp EEEE--TT--HHHHHHHCCCCCCEEEEEE----CTTEEEEEECCCHHHHHHHHHHT
T ss_pred EEEeCchHhhhhhHHHHhccCCcEEEEEE----cCCcEEEEeecHHHHHHHHHHhc
Confidence 33444444445679999999999994455 56689999999999999998775
No 114
>KOG1190|consensus
Probab=95.69 E-value=0.02 Score=46.21 Aligned_cols=71 Identities=18% Similarity=0.177 Sum_probs=54.1
Q ss_pred eeeecCCcchhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCceec--CeeeEEEecC
Q psy11609 4 FIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFF--GCKIDVSPYH 74 (83)
Q Consensus 4 fv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~--g~~i~V~~a~ 74 (83)
++........=|.|...|++||.|-++.-.--...==|+|.|.+++-|.-|..+++|+-|. -|+++++...
T Consensus 154 iie~m~ypVslDVLHqvFS~fG~VlKIiTF~Knn~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~Sk 226 (492)
T KOG1190|consen 154 IIENMFYPVSLDVLHQVFSKFGFVLKIITFTKNNGFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFSK 226 (492)
T ss_pred EeccceeeeEHHHHHHHHhhcceeEEEEEEecccchhhhhhccchhhHHHHHHhccCCcccCceeEEEeehhh
Confidence 3444445555677999999999998665544334445999999999999999999999883 3788877654
No 115
>KOG0128|consensus
Probab=95.55 E-value=0.0015 Score=55.81 Aligned_cols=64 Identities=22% Similarity=0.330 Sum_probs=54.8
Q ss_pred eEeeeecCCcchhhHHHHHhccCCceeEEEEec----cCCceEEEEEeCCchHHHHHHhhcCCceecCe
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIG----QGGDRYGLVCFKKADDAEKAILGSHEKHFFGC 66 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~----d~~~g~afV~F~~pEdA~~A~~~~ng~~~~g~ 66 (83)
|.||..++...-+.+|.+.|+.+|.+..+.|.. ..-+|+|||.|..|++|..|+ +++.++++|+
T Consensus 669 ~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV-~f~d~~~~gK 736 (881)
T KOG0128|consen 669 KIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAV-AFRDSCFFGK 736 (881)
T ss_pred HHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhh-hhhhhhhhhh
Confidence 468888888888999999999999999888772 124899999999999999998 7788888884
No 116
>KOG0128|consensus
Probab=94.96 E-value=0.014 Score=50.20 Aligned_cols=73 Identities=14% Similarity=0.062 Sum_probs=63.8
Q ss_pred CeEeeeecCCcchhhHHHHHhccCCceeEEEEeccC---CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEec
Q psy11609 1 MALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG---GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPY 73 (83)
Q Consensus 1 ~~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~---~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a 73 (83)
+.||+.++...-+++.|+..++++|+++++.++--. ++|-|+|-|.++-+|.++.-.+.+..+.-.-+.|+..
T Consensus 737 ~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vs 812 (881)
T KOG0128|consen 737 ISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVS 812 (881)
T ss_pred hhhheeCCCCCCchHHHHhhccccCCccccchhhhhccccccceeccCCCcchhhhhcccchhhhhhhcCcccccc
Confidence 357899999999999999999999999999765533 7999999999999999999999988887777777763
No 117
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=94.94 E-value=0.078 Score=32.15 Aligned_cols=55 Identities=18% Similarity=0.193 Sum_probs=30.9
Q ss_pred hhHHHHHhccCCcee-----EEEEeccCCceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEec
Q psy11609 14 KDGLYHEYKKHGKVS-----WVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPY 73 (83)
Q Consensus 14 ~d~L~~eF~kfG~It-----sv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a 73 (83)
..+|-..+.+-+.|. ++.| -+.|+||.-... .|+++++.+++..+.|+++.|++|
T Consensus 15 ~~~iv~~i~~~~gi~~~~IG~I~I----~~~~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 15 PRDIVGAICNEAGIPGRDIGRIDI----FDNFSFVEVPEE-VAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp HHHHHHHHHTCTTB-GGGEEEEEE-----SS-EEEEE-TT--HHHHHHHHTT--SSS----EEE-
T ss_pred HHHHHHHHHhccCCCHHhEEEEEE----eeeEEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEEC
Confidence 333555554444343 4445 456999998765 599999999999999999999986
No 118
>KOG4676|consensus
Probab=94.49 E-value=0.071 Score=42.99 Aligned_cols=78 Identities=18% Similarity=0.178 Sum_probs=65.9
Q ss_pred EeeeecCCcchhhHHHHHhccCCceeEEEEeccC-------CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCC
Q psy11609 3 LFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG-------GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHD 75 (83)
Q Consensus 3 lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~-------~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g 75 (83)
|=|.+++....+|-++..|.-.|+|-.+.++... ..+.+||-|-++.-+.-| +++-...|-+|-|.|-++.-
T Consensus 10 Iqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~va-QhLtntvfvdraliv~p~~~ 88 (479)
T KOG4676|consen 10 IQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVA-QHLTNTVFVDRALIVRPYGD 88 (479)
T ss_pred eeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHH-hhhccceeeeeeEEEEecCC
Confidence 4567788888899999999999999999999843 389999999999988888 57777888899999999886
Q ss_pred CCcccc
Q psy11609 76 VDFELE 81 (83)
Q Consensus 76 ~~~e~e 81 (83)
+.-+++
T Consensus 89 ~~~p~r 94 (479)
T KOG4676|consen 89 EVIPDR 94 (479)
T ss_pred CCCccH
Confidence 555554
No 119
>KOG4285|consensus
Probab=94.24 E-value=0.077 Score=41.46 Aligned_cols=50 Identities=12% Similarity=0.153 Sum_probs=40.1
Q ss_pred HHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCceecCeeeE
Q psy11609 17 LYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKID 69 (83)
Q Consensus 17 L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~ 69 (83)
+-.+|++||.|-+.. .....-+-.|-|++--+|++|+ ..||++|+|--+.
T Consensus 213 vL~~F~~cG~Vvkhv--~~~ngNwMhirYssr~~A~KAL-skng~ii~g~vmi 262 (350)
T KOG4285|consen 213 VLNLFSRCGEVVKHV--TPSNGNWMHIRYSSRTHAQKAL-SKNGTIIDGDVMI 262 (350)
T ss_pred HHHHHHhhCeeeeee--cCCCCceEEEEecchhHHHHhh-hhcCeeeccceEE
Confidence 667999999997443 3345559999999999999999 5599999886554
No 120
>KOG1855|consensus
Probab=94.04 E-value=0.054 Score=43.88 Aligned_cols=59 Identities=15% Similarity=0.163 Sum_probs=49.9
Q ss_pred eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC---------C--------ceEEEEEeCCchHHHHHHhhcCC
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG---------G--------DRYGLVCFKKADDAEKAILGSHE 60 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~---------~--------~g~afV~F~~pEdA~~A~~~~ng 60 (83)
||-+-.|..|..-+-|...|+.+|.|.+|+|.+-+ + +--|+|.|...+-|.+|.+-||-
T Consensus 233 tivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~ 308 (484)
T KOG1855|consen 233 TIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNP 308 (484)
T ss_pred eEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhch
Confidence 56677788888888899999999999999999862 1 34689999999999999887743
No 121
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=93.44 E-value=0.26 Score=35.03 Aligned_cols=54 Identities=20% Similarity=0.231 Sum_probs=43.9
Q ss_pred HHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecC
Q psy11609 17 LYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYH 74 (83)
Q Consensus 17 L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~ 74 (83)
+.+.-+.||+|.||-..+ +..|.|.|++...|=+|+.+..- ..-|.-+++.-.|
T Consensus 107 V~~~Ls~fGpI~SVT~cG---rqsavVvF~d~~SAC~Av~Af~s-~~pgtm~qCsWqq 160 (166)
T PF15023_consen 107 VIQRLSVFGPIQSVTLCG---RQSAVVVFKDITSACKAVSAFQS-RAPGTMFQCSWQQ 160 (166)
T ss_pred HHHHHHhcCCcceeeecC---CceEEEEehhhHHHHHHHHhhcC-CCCCceEEeeccc
Confidence 667889999999999876 66899999999999999988664 5566667765444
No 122
>KOG2135|consensus
Probab=93.37 E-value=0.046 Score=44.69 Aligned_cols=58 Identities=17% Similarity=0.163 Sum_probs=49.4
Q ss_pred hhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecC
Q psy11609 14 KDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYH 74 (83)
Q Consensus 14 ~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~ 74 (83)
-.+|..+|.+||+|-.|.|-+. .--|.|+|.+--||-+|. +..|-.|.++.|+|.-..
T Consensus 387 ~a~ln~hfA~fG~i~n~qv~~~--~~~a~vTF~t~aeag~a~-~s~~avlnnr~iKl~whn 444 (526)
T KOG2135|consen 387 IADLNPHFAQFGEIENIQVDYS--SLHAVVTFKTRAEAGEAY-ASHGAVLNNRFIKLFWHN 444 (526)
T ss_pred HhhhhhhhhhcCccccccccCc--hhhheeeeeccccccchh-ccccceecCceeEEEEec
Confidence 3568899999999999998663 557999999999998886 779999999999986544
No 123
>KOG4206|consensus
Probab=93.01 E-value=0.52 Score=35.05 Aligned_cols=71 Identities=11% Similarity=0.076 Sum_probs=54.6
Q ss_pred eEeeeecCCcchhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCceec-CeeeEEEec
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFF-GCKIDVSPY 73 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~-g~~i~V~~a 73 (83)
+||+..+..++..+-|...|..|.=-..|+. ...-.+.|||.|.+.-.|.-|.+++.|-.+- .-++.|..+
T Consensus 148 ilf~~niP~es~~e~l~~lf~qf~g~keir~-i~~~~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a 219 (221)
T KOG4206|consen 148 ILFLTNIPSESESEMLSDLFEQFPGFKEIRL-IPPRSGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFA 219 (221)
T ss_pred EEEEecCCcchhHHHHHHHHhhCcccceeEe-ccCCCceeEEecchhhhhHHHhhhhccceeccCceEEeccc
Confidence 6899999999888877666666655554444 3345789999999999999999999997764 667766654
No 124
>KOG4307|consensus
Probab=92.69 E-value=0.35 Score=41.67 Aligned_cols=64 Identities=8% Similarity=0.039 Sum_probs=49.2
Q ss_pred CCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEe
Q psy11609 9 SDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSP 72 (83)
Q Consensus 9 ~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~ 72 (83)
..+..=+++-+-|.-|=.+-.-.+.+.. +.|=+-|.|+++|||+.|...++++-|+.+.+++.+
T Consensus 876 Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 876 PFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred CccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 3455556666778888655433333332 478899999999999999999999999999999865
No 125
>KOG2193|consensus
Probab=92.35 E-value=0.12 Score=42.24 Aligned_cols=66 Identities=26% Similarity=0.248 Sum_probs=56.2
Q ss_pred eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCc-eecCeeeEEEec
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEK-HFFGCKIDVSPY 73 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~-~~~g~~i~V~~a 73 (83)
.||++.|+......+|...|..- ++.... ..|||||...+..-|.+|++..+|+ .+-|+++.|++.
T Consensus 3 klyignL~p~~~psdl~svfg~a------k~~~~g~fl~k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~s 73 (584)
T KOG2193|consen 3 KLYIGNLSPQVTPSDLESVFGDA------KIPGSGQFLVKSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHS 73 (584)
T ss_pred cccccccCCCCChHHHHHHhccc------cCCCCcceeeecceeeccCCchhhhhhhHHhhchhhhhcCceeeccch
Confidence 58999999999999999998754 333333 4899999999999999999999997 689999998764
No 126
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=92.31 E-value=0.39 Score=31.81 Aligned_cols=53 Identities=19% Similarity=0.182 Sum_probs=39.8
Q ss_pred hhhHHHHHhccC-CceeEEEEeccC-C-ceEEEEEeCCchHHHHHHhhcCCceecC
Q psy11609 13 LKDGLYHEYKKH-GKVSWVKIIGQG-G-DRYGLVCFKKADDAEKAILGSHEKHFFG 65 (83)
Q Consensus 13 ~~d~L~~eF~kf-G~Itsv~V~~d~-~-~g~afV~F~~pEdA~~A~~~~ng~~~~g 65 (83)
.-+.|..--+.+ ..|+.++|++|. + +=-+++.|+++++|++=..+-||+-|..
T Consensus 26 ~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 26 PSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred cHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 334454333333 568889999987 3 4468889999999999999999998865
No 127
>KOG4210|consensus
Probab=92.15 E-value=0.066 Score=40.52 Aligned_cols=73 Identities=14% Similarity=-0.053 Sum_probs=56.5
Q ss_pred eEeeeecCCcchhhHHHHHhccCCceeEEEEec----cCCceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecC
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIG----QGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYH 74 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~----d~~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~ 74 (83)
|+|+++++...=+...-..+.++|..-.+.... +.++|++++.|...+.+..|+..+-.+.++++++.-.+..
T Consensus 90 ~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~~ 166 (285)
T KOG4210|consen 90 TFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLNT 166 (285)
T ss_pred cccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCcccc
Confidence 578888887776666778899999766565554 2379999999999999999997666568888887765554
No 128
>KOG4211|consensus
Probab=91.86 E-value=0.36 Score=39.63 Aligned_cols=64 Identities=14% Similarity=0.028 Sum_probs=46.8
Q ss_pred ecCCcchhhHHHHHhccCCceeEEE-EeccC---CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEE
Q psy11609 7 VVSDTSLKDGLYHEYKKHGKVSWVK-IIGQG---GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVS 71 (83)
Q Consensus 7 k~~d~~~~d~L~~eF~kfG~Itsv~-V~~d~---~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~ 71 (83)
.|.....++++.+-|+--=.|+..- +..|. +-|=|||+|+++|.|++|+.. |.+.|.-|=|.|-
T Consensus 110 GLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~r-hre~iGhRYIEvF 177 (510)
T KOG4211|consen 110 GLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALGR-HRENIGHRYIEVF 177 (510)
T ss_pred CCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHHH-HHHhhccceEEee
Confidence 4678889999999999776666522 22232 688999999999999999976 4455555555553
No 129
>KOG0129|consensus
Probab=91.01 E-value=0.53 Score=38.76 Aligned_cols=72 Identities=13% Similarity=0.264 Sum_probs=52.8
Q ss_pred EeeeecCCcchhhHHHHHhccCCceeEEEEec-------cCCce---EEEEEeCCchHHHHHHh---hcCCceec-----
Q psy11609 3 LFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIG-------QGGDR---YGLVCFKKADDAEKAIL---GSHEKHFF----- 64 (83)
Q Consensus 3 lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~-------d~~~g---~afV~F~~pEdA~~A~~---~~ng~~~~----- 64 (83)
+|||.++.|..++.|..-|..||.+. |.=.+ .+++| |+|.-|++......-+. .--+++++
T Consensus 262 VFvGGlp~dise~~i~~~F~~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~~~~~~yf~vss~ 340 (520)
T KOG0129|consen 262 VFVGGLPWDITEAQINASFGQFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSEGEGNYYFKVSSP 340 (520)
T ss_pred eeecCCCccccHHHHHhhcccccceE-eecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhhcccceEEEEecC
Confidence 79999999999999999999999987 54432 22466 99999999887754433 33445544
Q ss_pred ---CeeeEEEecCC
Q psy11609 65 ---GCKIDVSPYHD 75 (83)
Q Consensus 65 ---g~~i~V~~a~g 75 (83)
.++++|-+|--
T Consensus 341 ~~k~k~VQIrPW~l 354 (520)
T KOG0129|consen 341 TIKDKEVQIRPWVL 354 (520)
T ss_pred cccccceeEEeeEe
Confidence 45566766653
No 130
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=90.63 E-value=0.27 Score=36.40 Aligned_cols=35 Identities=26% Similarity=0.223 Sum_probs=27.5
Q ss_pred EEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCCC
Q psy11609 41 GLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDVD 77 (83)
Q Consensus 41 afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~~ 77 (83)
|||+|+++.+|..|.+......- .++.|..|..|+
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~~--~~~~v~~APeP~ 35 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKRP--NSWRVSPAPEPD 35 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCCC--CCceEeeCCCcc
Confidence 79999999999999986655443 556777777665
No 131
>KOG4307|consensus
Probab=89.17 E-value=0.3 Score=42.02 Aligned_cols=72 Identities=11% Similarity=-0.016 Sum_probs=61.4
Q ss_pred eEeeeecCCcchhhHHHHHhccCCceeE-EEEeccC---CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEec
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGKVSW-VKIIGQG---GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPY 73 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~Its-v~V~~d~---~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a 73 (83)
.|||-.|...+.....-.-|++--.|.+ +.+.+-+ -++.|||.|.+|+++..|.....-..+.-+.|+|...
T Consensus 436 ~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si 511 (944)
T KOG4307|consen 436 ALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSI 511 (944)
T ss_pred eEEeccCCccccccchhhhhhhhhhhhheeEeccCCcccccchhhheeccccccchhhhcccccccCceEEEeech
Confidence 5889999999999999999998877776 6666644 3889999999999999999888888889999999764
No 132
>KOG0129|consensus
Probab=88.15 E-value=1.4 Score=36.41 Aligned_cols=57 Identities=21% Similarity=0.164 Sum_probs=50.4
Q ss_pred eEeeeecCCcchhhHHHHHhc-cCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhc
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYK-KHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGS 58 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~-kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ 58 (83)
|+|||.+.--..-++|-..+. -||-|.=|-|=-|+ ++|.|=|+|++..-=-+|+.+-
T Consensus 372 TVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsar 433 (520)
T KOG0129|consen 372 TVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISAR 433 (520)
T ss_pred eEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhhh
Confidence 899999999999999999999 89999877776665 6999999999999888888764
No 133
>KOG4574|consensus
Probab=87.86 E-value=0.29 Score=42.63 Aligned_cols=62 Identities=19% Similarity=0.108 Sum_probs=52.2
Q ss_pred cchhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCcee--cCeeeEEEecC
Q psy11609 11 TSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHF--FGCKIDVSPYH 74 (83)
Q Consensus 11 ~~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~--~g~~i~V~~a~ 74 (83)
....-.|--.|++||.|.|.|-.++ --.|.|.|..-|.|-.|++++.|+.+ -|-|.+|..|.
T Consensus 309 ~~tSssL~~l~s~yg~v~s~wtlr~--~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak 372 (1007)
T KOG4574|consen 309 NLTSSSLATLCSDYGSVASAWTLRD--LNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAK 372 (1007)
T ss_pred cchHHHHHHHHHhhcchhhheeccc--ccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecc
Confidence 3344458889999999999997663 45799999999999999999999855 78999998876
No 134
>KOG0105|consensus
Probab=87.74 E-value=1.6 Score=32.43 Aligned_cols=66 Identities=14% Similarity=0.251 Sum_probs=55.4
Q ss_pred EeeeecCCcchhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCcee--cCeeeEEE
Q psy11609 3 LFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHF--FGCKIDVS 71 (83)
Q Consensus 3 lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~--~g~~i~V~ 71 (83)
+.|..|....-=|+|+++-.+=|+|.=..|.+| |+|.|.|-+-||.+-|++.+...++ .|...++-
T Consensus 118 VvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD---g~GvV~~~r~eDMkYAvr~ld~~~~~seGe~~yir 185 (241)
T KOG0105|consen 118 VVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD---GVGVVEYLRKEDMKYAVRKLDDQKFRSEGETAYIR 185 (241)
T ss_pred EEEecCCCCCchHHHHHHHHhhCCeeeeeeecc---cceeeeeeehhhHHHHHHhhccccccCcCcEeeEE
Confidence 567888888888999999999999998888775 4999999999999999999988766 44444433
No 135
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=86.13 E-value=4.1 Score=24.57 Aligned_cols=51 Identities=20% Similarity=0.257 Sum_probs=37.3
Q ss_pred EeeeecCCcchhhHHHHHhccC----CceeEEEEeccCCceEEEEEeCCchHHHHHHhhc
Q psy11609 3 LFIYVVSDTSLKDGLYHEYKKH----GKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGS 58 (83)
Q Consensus 3 lfv~k~~d~~~~d~L~~eF~kf----G~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ 58 (83)
|.+-+ .|+-.-++++.-|+.| ++.. |.=+.|. .+=|.|.+++.|.+|+.+|
T Consensus 8 vhirG-vd~lsT~dI~~y~~~y~~~~~~~~-IEWIdDt---ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 8 VHIRG-VDELSTDDIKAYFSEYFDEEGPFR-IEWIDDT---SCNVVFKDEETAARALVAL 62 (62)
T ss_pred EEEEc-CCCCCHHHHHHHHHHhcccCCCce-EEEecCC---cEEEEECCHHHHHHHHHcC
Confidence 34444 3556667788888888 7655 6666654 5779999999999999875
No 136
>KOG4660|consensus
Probab=83.99 E-value=0.95 Score=37.55 Aligned_cols=41 Identities=10% Similarity=0.150 Sum_probs=30.7
Q ss_pred CceEEEEEeCCchHHHHHHhhcCCce---ecC---eeeEEEecCCCC
Q psy11609 37 GDRYGLVCFKKADDAEKAILGSHEKH---FFG---CKIDVSPYHDVD 77 (83)
Q Consensus 37 ~~g~afV~F~~pEdA~~A~~~~ng~~---~~g---~~i~V~~a~g~~ 77 (83)
.-|||||.|.+|+.+..+..+-||+- |.+ ++|-.+..||++
T Consensus 430 NvGYAFINm~sp~ai~~F~kAFnGk~W~~FnS~Kia~itYArIQGk~ 476 (549)
T KOG4660|consen 430 NVGYAFINMTSPEAIIRFYKAFNGKKWEKFNSEKIASITYARIQGKE 476 (549)
T ss_pred ccceeEEeecCHHHHHHHHHHHcCCchhhhcceeeeeeehhhhhchH
Confidence 47999999999999999999999962 333 334445556654
No 137
>KOG2253|consensus
Probab=80.21 E-value=0.76 Score=38.87 Aligned_cols=67 Identities=18% Similarity=-0.016 Sum_probs=60.6
Q ss_pred CeEeeeecCCcchhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEe
Q psy11609 1 MALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSP 72 (83)
Q Consensus 1 ~~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~ 72 (83)
.|+||++.++.+-.+.+...-.++|-|-|++... |||-.|..++-+-+|++-.+-..++|..+.+-.
T Consensus 41 ~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~-----fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 41 DTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK-----FGFCEFLKHIGDLRASRLLTELNIDDQKLIENV 107 (668)
T ss_pred ceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh-----hcccchhhHHHHHHHHHHhcccCCCcchhhccc
Confidence 3899999999999998999999999999999876 999999999999999999998888888887655
No 138
>KOG2591|consensus
Probab=80.00 E-value=3 Score=35.19 Aligned_cols=59 Identities=22% Similarity=0.203 Sum_probs=43.7
Q ss_pred CCcchhhHHHHHhcc--CCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCC--ceecCeeeEE
Q psy11609 9 SDTSLKDGLYHEYKK--HGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHE--KHFFGCKIDV 70 (83)
Q Consensus 9 ~d~~~~d~L~~eF~k--fG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng--~~~~g~~i~V 70 (83)
+.++-.++++-.|+- +=++++|.-.+. +.| ||+|++.+||+.|+..+.. +.|-||||..
T Consensus 184 pettp~e~Vk~lf~~encPk~iscefa~N-~nW--yITfesd~DAQqAykylreevk~fqgKpImA 246 (684)
T KOG2591|consen 184 PETTPIEVVKALFKGENCPKVISCEFAHN-DNW--YITFESDTDAQQAYKYLREEVKTFQGKPIMA 246 (684)
T ss_pred CCCChHHHHHHHhccCCCCCceeeeeeec-Cce--EEEeecchhHHHHHHHHHHHHHhhcCcchhh
Confidence 344445558888874 667777876442 222 7999999999999988877 5889999874
No 139
>KOG3152|consensus
Probab=79.77 E-value=0.77 Score=35.12 Aligned_cols=65 Identities=15% Similarity=0.068 Sum_probs=53.1
Q ss_pred EeeeecCCcchhhHHHHHhccCCceeEEEEeccC-C-----------ce----EEEEEeCCchHHHHHHhhcCCceecCe
Q psy11609 3 LFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG-G-----------DR----YGLVCFKKADDAEKAILGSHEKHFFGC 66 (83)
Q Consensus 3 lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~-~-----------~g----~afV~F~~pEdA~~A~~~~ng~~~~g~ 66 (83)
+|.++.+...--..|++.++.||.|-.|.+-... + .+ =|.|.|.+-..|+.....+||.-|.|+
T Consensus 77 vylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~Iggk 156 (278)
T KOG3152|consen 77 VYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPIGGK 156 (278)
T ss_pred EEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCccCCC
Confidence 5777777877778899999999999988876532 1 11 167999999999999999999999987
Q ss_pred e
Q psy11609 67 K 67 (83)
Q Consensus 67 ~ 67 (83)
.
T Consensus 157 k 157 (278)
T KOG3152|consen 157 K 157 (278)
T ss_pred C
Confidence 4
No 140
>KOG4849|consensus
Probab=79.19 E-value=2.1 Score=34.47 Aligned_cols=74 Identities=12% Similarity=0.169 Sum_probs=57.3
Q ss_pred CeEeeeecCCcchhhHHHHHhccCC--ceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecC
Q psy11609 1 MALFIYVVSDTSLKDGLYHEYKKHG--KVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYH 74 (83)
Q Consensus 1 ~~lfv~k~~d~~~~d~L~~eF~kfG--~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~ 74 (83)
+.+||++|+--+++.+|-+.-..-| .|..+|..-.+ |+|||+|-.-+.-..++-|+-+.-+.|.|..-.|....
T Consensus 81 ~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~~N 160 (498)
T KOG4849|consen 81 YCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLSYN 160 (498)
T ss_pred EEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeeccc
Confidence 3689999999999999888777666 33334444332 79999999998888899999999999998776665543
No 141
>KOG0804|consensus
Probab=78.29 E-value=3.3 Score=33.97 Aligned_cols=63 Identities=21% Similarity=0.202 Sum_probs=47.2
Q ss_pred EeeeecCCcchhhHHHHHh-ccCCceeEEEEeccC-C-ceEEEEEeCCchHHHHHHhhcCCceecC
Q psy11609 3 LFIYVVSDTSLKDGLYHEY-KKHGKVSWVKIIGQG-G-DRYGLVCFKKADDAEKAILGSHEKHFFG 65 (83)
Q Consensus 3 lfv~k~~d~~~~d~L~~eF-~kfG~Itsv~V~~d~-~-~g~afV~F~~pEdA~~A~~~~ng~~~~g 65 (83)
|++.-.+....--||-+-+ +..-.|..++|++|+ + +-..++.|++.+||+.=+.+.||+-|..
T Consensus 77 LcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 77 LCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred EEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 4455555555555555533 344678999999987 4 4468999999999999999999998865
No 142
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=76.59 E-value=1.2 Score=29.15 Aligned_cols=60 Identities=22% Similarity=0.356 Sum_probs=46.7
Q ss_pred CcchhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecC
Q psy11609 10 DTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYH 74 (83)
Q Consensus 10 d~~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~ 74 (83)
...+.+.|....+..|.++ ++-+ ++++..+.|.+++|+++++.. ..-.+.|..+.++.|.
T Consensus 31 ~~~l~~~l~~~W~~~~~~~-i~~l---~~~~fl~~F~~~~d~~~vl~~-~p~~~~~~~~~l~~W~ 90 (153)
T PF14111_consen 31 LSALEQELAKIWKLKGGVK-IRDL---GDNLFLFQFESEEDRQRVLKG-GPWNFNGHFLILQRWS 90 (153)
T ss_pred HHHHHHHHHHHhCCCCcEE-EEEe---CCCeEEEEEEeccceeEEEec-ccccccccchhhhhhc
Confidence 3466777777778788777 4433 578999999999999999863 3356788999999998
No 143
>PF02829 3H: 3H domain; InterPro: IPR004173 The 3H domain is named after its three highly conserved histidine residues. The 3H domain appears to be a small molecule-binding domain, based on its occurrence with other domains []. Several proteins carrying this domain are transcriptional regulators from the biotin repressor family. The transcription regulator TM1602 from Thermotoga maritima is a DNA-binding protein thought to belong to a family of de novo NAD synthesis pathway regulators. TM1602 has an N-terminal DNA-binding domain and a C-terminal 3H regulatory domain. The N-terminal domain appears to bind to the NAD promoter region and repress the de novo NAD biosynthesis operon, while the C-terminal 3H domain may bind to nicotinamide, nicotinic acid, or other substrate/products []. The 3H domain has a 2-layer alpha/beta sandwich fold.; GO: 0005488 binding; PDB: 1J5Y_A.
Probab=75.89 E-value=11 Score=24.46 Aligned_cols=57 Identities=18% Similarity=0.111 Sum_probs=44.0
Q ss_pred eeeecCCcchhhHHHHHhccCCceeEEEEeccC-CceEEEEEeCCchHHHHHHhhcCC
Q psy11609 4 FIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG-GDRYGLVCFKKADDAEKAILGSHE 60 (83)
Q Consensus 4 fv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~-~~g~afV~F~~pEdA~~A~~~~ng 60 (83)
+..+.+.+.++++|.-.=+.=|.|.+|.|-+.. .+=-|-+..++.+|+++-++.|+.
T Consensus 1 i~v~H~~~~~~~EL~~IVd~Gg~V~DV~veHp~YG~i~~~L~i~sr~Dv~~Fi~~l~~ 58 (98)
T PF02829_consen 1 IAVKHTPDEIEDELEIIVDNGGRVLDVIVEHPVYGEITGNLNISSRRDVDKFIEKLEK 58 (98)
T ss_dssp EEEE--GGGHHHHHHHHHHTT-EEEEEEEEETTTEEEEEEEEE-SHHHHHHHHHHHHH
T ss_pred CeeECCHHHHHHHHHHHHHCCCEEEEEEEeCCCCcEEEEEEecCCHHHHHHHHHHHhc
Confidence 467889999999999988888899999988865 456788899999999988877653
No 144
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=74.34 E-value=13 Score=26.14 Aligned_cols=62 Identities=8% Similarity=0.046 Sum_probs=38.7
Q ss_pred eeeecCCcchhhHHHHHhcc-CCce---eEEE--EeccC----CceEEEEEeCCchHHHHHHhhcCCceecC
Q psy11609 4 FIYVVSDTSLKDGLYHEYKK-HGKV---SWVK--IIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFG 65 (83)
Q Consensus 4 fv~k~~d~~~~d~L~~eF~k-fG~I---tsv~--V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g 65 (83)
-|-+|...-.++.+....+. +|+- ..+. +.... --.-|||.|.+++++..=.+..+|..|-+
T Consensus 11 VIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D 82 (176)
T PF03467_consen 11 VIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVD 82 (176)
T ss_dssp EEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-
T ss_pred EEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEEC
Confidence 34455555566667777776 7766 3232 11111 24579999999999999999999988744
No 145
>PF13820 Nucleic_acid_bd: Putative nucleic acid-binding region
Probab=73.51 E-value=7 Score=27.35 Aligned_cols=48 Identities=19% Similarity=0.113 Sum_probs=37.4
Q ss_pred cchhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCC
Q psy11609 11 TSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHE 60 (83)
Q Consensus 11 ~~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng 60 (83)
|.++..|...|+. .++.+++-+..+...+.|+|+-|.+|-.-++.|--
T Consensus 20 d~i~~~l~~L~~~--~~~~l~~~~~~~~~sv~V~f~ipreaa~~Lr~LA~ 67 (149)
T PF13820_consen 20 DDIKNWLASLYKP--RISDLKVRKVEPWNSVRVTFSIPREAATRLRQLAQ 67 (149)
T ss_pred HHHHHHHHHHHhc--ccccceeeccccCceEEEEEechHHHHHHHHHHhh
Confidence 5566667777766 45668888888899999999999999777776644
No 146
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=69.72 E-value=9.5 Score=25.27 Aligned_cols=35 Identities=17% Similarity=0.221 Sum_probs=23.0
Q ss_pred hHHHHHhccCCceeEEEEeccC--CceEEEEEeCCchH
Q psy11609 15 DGLYHEYKKHGKVSWVKIIGQG--GDRYGLVCFKKADD 50 (83)
Q Consensus 15 d~L~~eF~kfG~Itsv~V~~d~--~~g~afV~F~~pEd 50 (83)
+.|.++|+.|.++. |+..... ..|+++|.|.+.-.
T Consensus 32 ~~l~~~l~~f~p~k-v~~l~~~~gh~g~aiv~F~~~w~ 68 (116)
T PF03468_consen 32 EELLDKLAEFNPLK-VKPLYGKQGHTGFAIVEFNKDWS 68 (116)
T ss_dssp HHHHHHHHH---SE-EEEEEETTEEEEEEEEE--SSHH
T ss_pred HHHHHHHHhcCCce-eEECcCCCCCcEEEEEEECCChH
Confidence 34888999999987 7777655 48999999987643
No 147
>TIGR01016 sucCoAbeta succinyl-CoA synthetase, beta subunit. This family contains a split seen both in a maximum parsimony tree (which ignores gaps) and in the gap pattern near position 85 of the seed alignment. Eukaryotic and most bacterial sequences are longer and contain a region similar to TXQTXXXG. Sequences from Deinococcus radiodurans, Mycobacterium tuberculosis, Streptomyces coelicolor, and the Archaea are 6 amino acids shorter in that region and contain a motif resembling [KR]G
Probab=68.67 E-value=17 Score=27.88 Aligned_cols=45 Identities=20% Similarity=0.062 Sum_probs=29.0
Q ss_pred hhHHHHHhccCC--ceeEEEEe-----ccCCceEEEEEeCCchHHHHHHhhcCCc
Q psy11609 14 KDGLYHEYKKHG--KVSWVKII-----GQGGDRYGLVCFKKADDAEKAILGSHEK 61 (83)
Q Consensus 14 ~d~L~~eF~kfG--~Itsv~V~-----~d~~~g~afV~F~~pEdA~~A~~~~ng~ 61 (83)
.+++.+..+++| ++. +|.. +..+.|..++ ++++++.+|++.+-++
T Consensus 28 ~~ea~~~~~~ig~~PvV-vK~~~~~ggkg~~GGV~~~--~~~~e~~~a~~~l~~~ 79 (386)
T TIGR01016 28 VEEAEEIAAKLGAGPVV-VKAQVHAGGRGKAGGVKVA--KSKEEARAAAEKLLGK 79 (386)
T ss_pred HHHHHHHHHHhCCCcEE-EEecccCCCCccCceEEEe--CCHHHHHHHHHHHhcc
Confidence 344555666666 655 6654 2223466666 8999999999887653
No 148
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=68.37 E-value=21 Score=20.75 Aligned_cols=42 Identities=26% Similarity=0.314 Sum_probs=33.1
Q ss_pred HHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcC
Q psy11609 17 LYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSH 59 (83)
Q Consensus 17 L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~n 59 (83)
+.+..+++| +-.+++.+.+..+..|+-+.++++|+++.+.+.
T Consensus 39 ~~~~~~~~G-a~~~~~sGsG~G~~v~~l~~~~~~~~~v~~~l~ 80 (85)
T PF08544_consen 39 LKEAAEENG-ALGAKMSGSGGGPTVFALCKDEDDAERVAEALR 80 (85)
T ss_dssp HHHHHHHTT-ESEEEEETTSSSSEEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHCC-CCceecCCCCCCCeEEEEECCHHHHHHHHHHHH
Confidence 666678999 556888887667788888889999888877653
No 149
>KOG1365|consensus
Probab=66.89 E-value=16 Score=29.83 Aligned_cols=58 Identities=14% Similarity=0.094 Sum_probs=40.8
Q ss_pred eecCCcchhhHHHHHhc-----cCCceeEEEEec-cC-CceEEEEEeCCchHHHHHHhhcCCceec
Q psy11609 6 YVVSDTSLKDGLYHEYK-----KHGKVSWVKIIG-QG-GDRYGLVCFKKADDAEKAILGSHEKHFF 64 (83)
Q Consensus 6 ~k~~d~~~~d~L~~eF~-----kfG~Itsv~V~~-d~-~~g~afV~F~~pEdA~~A~~~~ng~~~~ 64 (83)
-+|..|....++..-|. .=|+.-=.-|.+ |+ ..|=|||-|..+|+|+.|++. |...++
T Consensus 167 RGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~k-hrq~iG 231 (508)
T KOG1365|consen 167 RGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALRK-HRQNIG 231 (508)
T ss_pred cCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHHH-HHHHHh
Confidence 35778888888888887 334444333444 33 688999999999999999965 444443
No 150
>KOG4019|consensus
Probab=66.78 E-value=7 Score=28.59 Aligned_cols=38 Identities=18% Similarity=0.187 Sum_probs=32.1
Q ss_pred CceEEEEEeCCchHHHHHHhhcCCceecCe-eeEEEecC
Q psy11609 37 GDRYGLVCFKKADDAEKAILGSHEKHFFGC-KIDVSPYH 74 (83)
Q Consensus 37 ~~g~afV~F~~pEdA~~A~~~~ng~~~~g~-~i~V~~a~ 74 (83)
+-|.--|.|.+|+-|.+|.-..++..|.|+ .+..-++|
T Consensus 50 sfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~yfaQ 88 (193)
T KOG4019|consen 50 SFRRVRINFSNPEAAADARIKLHSTSFNGKNELKLYFAQ 88 (193)
T ss_pred hhceeEEeccChhHHHHHHHHhhhcccCCCceEEEEEcc
Confidence 455556899999999999999999999998 77777777
No 151
>PF08156 NOP5NT: NOP5NT (NUC127) domain; InterPro: IPR012974 This N-terminal domain is found in RNA-binding proteins of the NOP5 family [].
Probab=64.11 E-value=2.5 Score=25.49 Aligned_cols=52 Identities=17% Similarity=0.155 Sum_probs=32.4
Q ss_pred CeEeeeecCCcchhh--HHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhc
Q psy11609 1 MALFIYVVSDTSLKD--GLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGS 58 (83)
Q Consensus 1 ~~lfv~k~~d~~~~d--~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ 58 (83)
++||-.+...+.+.. ++...|+.+++..++. +=.||.-|++.++|-+++.++
T Consensus 11 yaLF~v~~~~~~~~~~~~v~~~~~~~~~f~k~v------kL~aF~pF~s~~~ALe~~~ai 64 (67)
T PF08156_consen 11 YALFKVKDEKDEIGSDEEVQKSFSDPEKFSKIV------KLKAFSPFKSAEEALENANAI 64 (67)
T ss_pred eeeeEEechhhhhccHHHHHHHHcCHHHHhhhh------hhhhccCCCCHHHHHHHHHHh
Confidence 367777744444433 6777777655554321 115888899888887666554
No 152
>PF01762 Galactosyl_T: Galactosyltransferase; InterPro: IPR002659 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 31 (GH31 from CAZY) comprises enzymes with a number of known activities; N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase (2.4.1.149 from EC); beta-1,3-galactosyltransferase (2.4.1 from EC); fucose-specific beta-1,3-N-acetylglucosaminyltransferase (2.4.1 from EC); globotriosylceramide beta-1,3-GalNAc transferase (2.4.1.79 from EC) [, ].; GO: 0008378 galactosyltransferase activity, 0006486 protein glycosylation, 0016020 membrane
Probab=58.69 E-value=8.7 Score=26.41 Aligned_cols=32 Identities=22% Similarity=0.323 Sum_probs=23.8
Q ss_pred eEeeeecCC---cchhhHHHHHhccCCceeEEEEe
Q psy11609 2 ALFIYVVSD---TSLKDGLYHEYKKHGKVSWVKII 33 (83)
Q Consensus 2 ~lfv~k~~d---~~~~d~L~~eF~kfG~Itsv~V~ 33 (83)
.+|+.+.+. ..+.+.|.+|-++||+|--+...
T Consensus 23 ~~FvvG~~~~~~~~~~~~l~~E~~~y~Dil~~d~~ 57 (195)
T PF01762_consen 23 VVFVVGESPNSDSDLQEALQEEAEKYGDILQGDFV 57 (195)
T ss_pred EEEEEecCCCCcHHHHHHhhhhhhhcCceEeeecc
Confidence 467777666 45566699999999999866553
No 153
>COG3403 Uncharacterized conserved protein [Function unknown]
Probab=57.88 E-value=11 Score=28.61 Aligned_cols=43 Identities=21% Similarity=0.281 Sum_probs=34.9
Q ss_pred eeeecCCcchhhHHHHHhccCCceeEEEEeccCCceEEE-EEeCCchHH
Q psy11609 4 FIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGL-VCFKKADDA 51 (83)
Q Consensus 4 fv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~~~g~af-V~F~~pEdA 51 (83)
||+-+.+-+.-.+|.+.-.+||+|+ +|..+...| |.|.+|||.
T Consensus 58 vvgdl~~p~aa~gla~~Laey~t~~-----~D~g~~aSfv~~fdtPEdl 101 (257)
T COG3403 58 VVGDLRSPSAAXGLAPLLAEYGTIS-----RDTGKYASFVVTFDTPEDL 101 (257)
T ss_pred eccCCCCchhhhhhHHHHHHHhhhc-----cccCcceEEEEEecChhhh
Confidence 6777888888889999999999988 666666555 568999987
No 154
>COG3797 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=56.85 E-value=45 Score=24.13 Aligned_cols=75 Identities=11% Similarity=0.052 Sum_probs=50.2
Q ss_pred eeeecCCcchhhHHHHHhc-cCCceeEEEEeccC------------------CceEEEEEeCCchHHHH---HHhhcCC-
Q psy11609 4 FIYVVSDTSLKDGLYHEYK-KHGKVSWVKIIGQG------------------GDRYGLVCFKKADDAEK---AILGSHE- 60 (83)
Q Consensus 4 fv~k~~d~~~~d~L~~eF~-kfG~Itsv~V~~d~------------------~~g~afV~F~~pEdA~~---A~~~~ng- 60 (83)
|-+......+++.|+..|. +||...++-|-... +.+..+-.++.|=|.+. -....++
T Consensus 47 f~s~~~~~el~~klE~afe~~fg~~~dilVrs~~~~~~i~a~nPf~~~~~~~~~~~~v~f~~ep~dvd~v~~l~~~~~~~ 126 (178)
T COG3797 47 FESEAGAAELEAKLEAAFEKRFGRHVDILVRSAEDWETIAAANPFPEEAAGEPARVCVRFYREPLDVDEVEALADKAGGD 126 (178)
T ss_pred EEcCCChHHHHHHHHHHHHHHcCCCccEEEeeHHHHHHHHhcCCCchhhccCcceEEEEEEcCCCcHHHHHHHHHHhCCC
Confidence 4444445567777888886 89999988875421 36778888888877321 1122222
Q ss_pred --ceecCeeeEEEecCCCCc
Q psy11609 61 --KHFFGCKIDVSPYHDVDF 78 (83)
Q Consensus 61 --~~~~g~~i~V~~a~g~~~ 78 (83)
....|+.++|..++++-.
T Consensus 127 eev~~~g~~L~v~f~~~~~~ 146 (178)
T COG3797 127 EEVLAVGDDLWVDFSDGPSK 146 (178)
T ss_pred ceEEecCCeeEEEecCCCCc
Confidence 366999999999997643
No 155
>KOG2187|consensus
Probab=56.20 E-value=8.4 Score=32.06 Aligned_cols=38 Identities=26% Similarity=0.233 Sum_probs=34.2
Q ss_pred CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecC
Q psy11609 37 GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYH 74 (83)
Q Consensus 37 ~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~ 74 (83)
-..+++++|++|+++.+|....+|-...+.++.|.++.
T Consensus 62 ~~~~~~~~~et~~~~~ka~~~v~g~~~k~~~~~~~~~~ 99 (534)
T KOG2187|consen 62 MPKYAYVTFETPSDAGKAINLVDGLLYKGFILRVQLGA 99 (534)
T ss_pred CCCceEEEEeccchhhhHHHHHhhhhhhcchhhhhhcc
Confidence 36799999999999999999999999999998887764
No 156
>PRK08559 nusG transcription antitermination protein NusG; Validated
Probab=55.93 E-value=46 Score=22.64 Aligned_cols=51 Identities=18% Similarity=0.025 Sum_probs=38.6
Q ss_pred CCcchhhHHHHHhc--cCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCc
Q psy11609 9 SDTSLKDGLYHEYK--KHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEK 61 (83)
Q Consensus 9 ~d~~~~d~L~~eF~--kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~ 61 (83)
....+.+.|....+ ... |.+|.|.. .-+||-||.-..++++..|++.+.|.
T Consensus 17 ~E~~V~~~L~~~~~~~~~~-i~~i~vp~-~fpGYVfVe~~~~~~~~~~i~~v~~v 69 (153)
T PRK08559 17 QERNVALMLAMRAKKENLP-IYAILAPP-ELKGYVLVEAESKGAVEEAIRGIPHV 69 (153)
T ss_pred hHHHHHHHHHHHHHhCCCc-EEEEEccC-CCCcEEEEEEEChHHHHHHHhcCCCE
Confidence 35566777777665 444 77666644 36999999999999999999999874
No 157
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=55.81 E-value=13 Score=24.53 Aligned_cols=68 Identities=13% Similarity=0.167 Sum_probs=48.9
Q ss_pred eEeeeecCCcchhhHHHHHhccCCceeEEEEeccCC----ceEEEEEeCCchHHHHHHhhcCCceecCeeeE
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGG----DRYGLVCFKKADDAEKAILGSHEKHFFGCKID 69 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~~----~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~ 69 (83)
++++..+........+...|..+|.+....+..... ....++.+....++..+...++.....+++..
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (306)
T COG0724 227 NLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDGKIPKSRSFVGNEASKDALESNSRGNKKKILGRGPR 298 (306)
T ss_pred eeeccccccccchhHHHHhccccccceeeeccCCCCCcccccccccchhHHHhhhhhhccccceeecccCcc
Confidence 467778888899999999999999998777776552 44555666666666666666666555554443
No 158
>KOG1365|consensus
Probab=54.42 E-value=9.2 Score=31.22 Aligned_cols=68 Identities=15% Similarity=0.157 Sum_probs=46.3
Q ss_pred ecCCcchhhHHHHHhccCCc---eeEEEEeccC---CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecC
Q psy11609 7 VVSDTSLKDGLYHEYKKHGK---VSWVKIIGQG---GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYH 74 (83)
Q Consensus 7 k~~d~~~~d~L~~eF~kfG~---Itsv~V~~d~---~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~ 74 (83)
+|..+...+++-+-++.|-+ ---|.++... +.|=|||.|++.|+|..|...-+.+...+|=|.|=+..
T Consensus 287 GLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~S 360 (508)
T KOG1365|consen 287 GLPYEATVEDILDFLGDFATDIRFQGVHMVLNGQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPCS 360 (508)
T ss_pred CCChhhhHHHHHHHHHHHhhhcccceeEEEEcCCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeecc
Confidence 45666667776565554432 2224444433 68899999999999999998888777767777665543
No 159
>TIGR02381 cspD cold shock domain protein CspD. This model represents what appears to be a phylogenetically distinct clade, containing E. coli CspD and related proteobacterial proteins within the larger family of cold shock domain proteins described by pfam model pfam00313. The gene symbol cspD may have been used idependently for other subfamilies of cold shock domain proteins, such as for B. subtilis CspD. These proteins typically are shorter than 70 amino acids. In E. coli, CspD is a stress response protein induced in stationary phase. This homodimer binds single-stranded DNA and appears to inhibit DNA replication.
Probab=53.73 E-value=29 Score=20.59 Aligned_cols=44 Identities=14% Similarity=0.169 Sum_probs=29.9
Q ss_pred cCCceEEEEEeCC-chHH---HHHHhhcC-CceecCeeeEEEecCCCCc
Q psy11609 35 QGGDRYGLVCFKK-ADDA---EKAILGSH-EKHFFGCKIDVSPYHDVDF 78 (83)
Q Consensus 35 d~~~g~afV~F~~-pEdA---~~A~~~~n-g~~~~g~~i~V~~a~g~~~ 78 (83)
+..+|||||.=.. .+|+ ..|+.... ...--|..+..++.+++..
T Consensus 10 ~~~kGfGFI~~~~g~~dvfvH~s~~~~~g~~~l~~G~~V~f~~~~~~~G 58 (68)
T TIGR02381 10 NNAKGFGFICPEGVDGDIFAHYSTIQMDGYRTLKAGQKVQFEVVQGPKG 58 (68)
T ss_pred eCCCCeEEEecCCCCccEEEEHHHhhhcCCCCCCCCCEEEEEEEECCCC
Confidence 4579999998766 4555 56665432 3455788888888776543
No 160
>KOG0226|consensus
Probab=51.66 E-value=6.3 Score=30.35 Aligned_cols=72 Identities=14% Similarity=0.041 Sum_probs=59.9
Q ss_pred EeeeecCCcchhhH-H--HHHhccCCceeEEEEeccCC---ceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecC
Q psy11609 3 LFIYVVSDTSLKDG-L--YHEYKKHGKVSWVKIIGQGG---DRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYH 74 (83)
Q Consensus 3 lfv~k~~d~~~~d~-L--~~eF~kfG~Itsv~V~~d~~---~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~ 74 (83)
+|++.+..+...+- | ...|+.|=.+..-+++.+.+ .++||+.|+...--.++.+..++|.+.-.|++.+-.+
T Consensus 99 p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a~gt 176 (290)
T KOG0226|consen 99 PFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDRPQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLAAGT 176 (290)
T ss_pred ccccccccccCCCCCCcchhhhccchhhhhhhhhhcCCCccCcccccCcchhhhhhhhccccccccccCcceeecccc
Confidence 56777777777766 4 88999999998889998874 8899999999998899999999999999986655443
No 161
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=51.48 E-value=37 Score=20.86 Aligned_cols=39 Identities=15% Similarity=0.045 Sum_probs=27.3
Q ss_pred ceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCceecC
Q psy11609 26 KVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFG 65 (83)
Q Consensus 26 ~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~g 65 (83)
.|.|+-+ .+.-+||=||+=.++.+..+|++.+.+..-..
T Consensus 33 ~I~Si~~-~~~lkGyIyVEA~~~~~V~~ai~gi~~i~~~~ 71 (84)
T PF03439_consen 33 NIYSIFA-PDSLKGYIYVEAERESDVKEAIRGIRHIRGSR 71 (84)
T ss_dssp ---EEEE--TTSTSEEEEEESSHHHHHHHHTT-TTEEEEC
T ss_pred ceEEEEE-eCCCceEEEEEeCCHHHHHHHHhcccceeecc
Confidence 4666655 44479999999999999999999888754433
No 162
>PRK14590 rimM 16S rRNA-processing protein RimM; Provisional
Probab=51.23 E-value=25 Score=24.47 Aligned_cols=39 Identities=23% Similarity=0.119 Sum_probs=29.5
Q ss_pred ceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCCC--ccccC
Q psy11609 38 DRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDVD--FELEF 82 (83)
Q Consensus 38 ~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~~--~e~e~ 82 (83)
++..+|.|+.-.+.+.| +.+-|+.|+|...+-|+ .|+||
T Consensus 57 ~~~~lv~f~gi~~~e~A------e~L~g~~l~i~~~~lp~l~~e~e~ 97 (171)
T PRK14590 57 GGKFLVRFEGYDTPEEA------VKWRGGSLFLPQELLPKIETKGEF 97 (171)
T ss_pred CCEEEEEECCCCCHHHH------HHhcCCEEEEEHHHCCCCCCCCCE
Confidence 44579999999988888 34567888998888776 36665
No 163
>cd04489 ExoVII_LU_OBF ExoVII_LU_OBF: A subfamily of OB folds corresponding to the N-terminal OB-fold domain of Escherichia coli exodeoxyribonuclease VII (ExoVII) large subunit. E. coli ExoVII is composed of two non-identical subunits. E. coli ExoVII is a single-strand-specific exonuclease which degrades ssDNA from both 3-prime and 5-prime ends. ExoVII plays a role in methyl-directed mismatch repair in vivo. ExoVII may also guard the genome from mutagenesis by removing excess ssDNA, since the build up of ssDNA would lead to SOS induction and PolIV-dependent mutagenesis.
Probab=48.96 E-value=20 Score=20.76 Aligned_cols=22 Identities=23% Similarity=0.211 Sum_probs=14.5
Q ss_pred CceeEEEEeccCCceEEEEEeCCch
Q psy11609 25 GKVSWVKIIGQGGDRYGLVCFKKAD 49 (83)
Q Consensus 25 G~Itsv~V~~d~~~g~afV~F~~pE 49 (83)
|.|++++. ..+|+||++.++..
T Consensus 6 g~v~~i~~---tk~g~~~~~L~D~~ 27 (78)
T cd04489 6 GEISNLKR---PSSGHLYFTLKDED 27 (78)
T ss_pred EEEecCEE---CCCcEEEEEEEeCC
Confidence 66777776 23457777776665
No 164
>cd04458 CSP_CDS Cold-Shock Protein (CSP) contains an S1-like cold-shock domain (CSD) that is found in eukaryotes, prokaryotes, and archaea. CSP's include the major cold-shock proteins CspA and CspB in bacteria and the eukaryotic gene regulatory factor Y-box protein. CSP expression is up-regulated by an abrupt drop in growth temperature. CSP's are also expressed under normal condition at lower level. The function of cold-shock proteins is not fully understood. They preferentially bind poly-pyrimidine region of single-stranded RNA and DNA. CSP's are thought to bind mRNA and regulate ribosomal translation, mRNA degradation, and the rate of transcription termination. The human Y-box protein, which contains a CSD, regulates transcription and translation of genes that contain the Y-box sequence in their promoters. This specific ssDNA-binding properties of CSD are required for the binding of Y-box protein to the promoter's Y-box sequence, thereby regulating transcription.
Probab=48.19 E-value=35 Score=19.41 Aligned_cols=42 Identities=12% Similarity=0.171 Sum_probs=28.5
Q ss_pred ccCCceEEEEEeCC-chHH---HHHHhhc-CCceecCeeeEEEecCC
Q psy11609 34 GQGGDRYGLVCFKK-ADDA---EKAILGS-HEKHFFGCKIDVSPYHD 75 (83)
Q Consensus 34 ~d~~~g~afV~F~~-pEdA---~~A~~~~-ng~~~~g~~i~V~~a~g 75 (83)
.+..+|||||.=.+ .+|. ..++... ....--|.++..+..++
T Consensus 8 ~~~~kGfGFI~~~~~g~diffh~~~~~~~~~~~~~~G~~V~f~~~~~ 54 (65)
T cd04458 8 FDDEKGFGFITPDDGGEDVFVHISALEGDGFRSLEEGDRVEFELEEG 54 (65)
T ss_pred EECCCCeEEEecCCCCcCEEEEhhHhhccCCCcCCCCCEEEEEEEEC
Confidence 34579999998777 4554 5566554 34566788888777665
No 165
>PRK13829 rimM 16S rRNA-processing protein RimM; Provisional
Probab=47.29 E-value=31 Score=23.76 Aligned_cols=46 Identities=9% Similarity=0.063 Sum_probs=31.4
Q ss_pred eeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCCCcc-ccC
Q psy11609 27 VSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDVDFE-LEF 82 (83)
Q Consensus 27 Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~~~e-~e~ 82 (83)
|.+++.. ++..++.|+.-.+.+.|- .+-|+.|+|...+-|+-+ +||
T Consensus 43 v~~~r~~----~~~~l~~f~gi~~r~~Ae------~l~g~~l~v~~~~lp~L~e~Ey 89 (162)
T PRK13829 43 IERAERV----GPELVLHLAGVTSREGAE------ALVGLRVYADDADLPPLEEGSY 89 (162)
T ss_pred EEEEEEE----CCEEEEEECCCCCHHHHH------HhcCCEEEEEHHHCCCCCCCCE
Confidence 5555532 345799999988888883 456778888877766554 365
No 166
>PF13689 DUF4154: Domain of unknown function (DUF4154)
Probab=45.98 E-value=33 Score=22.73 Aligned_cols=30 Identities=20% Similarity=0.084 Sum_probs=24.4
Q ss_pred CchHHHHHHhhcCCceecCeeeEEEecCCC
Q psy11609 47 KADDAEKAILGSHEKHFFGCKIDVSPYHDV 76 (83)
Q Consensus 47 ~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~ 76 (83)
.+++...++..+.|+.+.|+||.|.....+
T Consensus 34 g~~~~~~~L~~l~~~~~~~~~i~v~~~~~~ 63 (145)
T PF13689_consen 34 GDDPFAEALSTLAGKQVGGRPIRVRRLSSP 63 (145)
T ss_pred CChHHHHHHHHhhhcccCCCcEEEEECCCC
Confidence 344577899999999999999999877643
No 167
>PRK13828 rimM 16S rRNA-processing protein RimM; Provisional
Probab=44.76 E-value=38 Score=23.23 Aligned_cols=39 Identities=18% Similarity=0.095 Sum_probs=28.1
Q ss_pred ceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCCCccc-cC
Q psy11609 38 DRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDVDFEL-EF 82 (83)
Q Consensus 38 ~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~~~e~-e~ 82 (83)
++..+|.|+.-.+.+.|- .+-|+.|++...+-|+.++ ||
T Consensus 41 ~~~~lv~f~gi~dr~~Ae------~L~g~~l~i~~~~lp~l~e~e~ 80 (161)
T PRK13828 41 KDGLVARLKGVATREAAE------ALRGLELYVPRDRLPELDDDEF 80 (161)
T ss_pred CCEEEEEECCCCCHHHHH------HhcCCEEEEEHHHCCCCCCCCE
Confidence 445799999999988883 4567778888777655433 65
No 168
>PRK11558 putative ssRNA endonuclease; Provisional
Probab=44.76 E-value=42 Score=21.94 Aligned_cols=46 Identities=9% Similarity=0.160 Sum_probs=27.5
Q ss_pred eEeeeecCCcchhhHHHH-HhccCCceeEEEEeccC-CceEEEEEeCCc
Q psy11609 2 ALFIYVVSDTSLKDGLYH-EYKKHGKVSWVKIIGQG-GDRYGLVCFKKA 48 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~-eF~kfG~Itsv~V~~d~-~~g~afV~F~~p 48 (83)
.+||++.|.. +.|.|.+ .-+.+|+=+-+-|..++ +.||+|-++-++
T Consensus 29 GVyVg~~S~r-VRd~lW~~v~~~~~~G~avmv~~~~~eqG~~~~t~G~~ 76 (97)
T PRK11558 29 GVYVGDVSRR-IREMIWQQVTQLAEEGNVVMAWATNTESGFEFQTFGEN 76 (97)
T ss_pred CcEEcCCCHH-HHHHHHHHHHHhCCCCcEEEEEcCCCCCCcEEEecCCC
Confidence 5899965554 5555554 44444443333333444 689999988776
No 169
>PLN02936 epsilon-ring hydroxylase
Probab=44.31 E-value=26 Score=27.39 Aligned_cols=41 Identities=15% Similarity=0.066 Sum_probs=31.0
Q ss_pred chhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhh
Q psy11609 12 SLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILG 57 (83)
Q Consensus 12 ~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~ 57 (83)
...-.|.+.+++||+|-.+.+.. .-.|...+||.+++.+..
T Consensus 37 ~~~~~~~~~~~~yG~i~~~~~g~-----~~~vvv~~pe~~~~il~~ 77 (489)
T PLN02936 37 ALFLPLFKWMNEYGPVYRLAAGP-----RNFVVVSDPAIAKHVLRN 77 (489)
T ss_pred HHHHHHHHHHHHcCCEEEEccCC-----ccEEEEcCHHHHHHHHHh
Confidence 34445888999999988766532 356788999999999865
No 170
>PRK11901 hypothetical protein; Reviewed
Probab=44.19 E-value=41 Score=26.47 Aligned_cols=60 Identities=23% Similarity=0.249 Sum_probs=42.4
Q ss_pred EeeeecCCcchhhHHHHHhccCCceeEEEEecc---CCceEEEE--EeCCchHHHHHHhhcCCcee
Q psy11609 3 LFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQ---GGDRYGLV--CFKKADDAEKAILGSHEKHF 63 (83)
Q Consensus 3 lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d---~~~g~afV--~F~~pEdA~~A~~~~ng~~~ 63 (83)
.|...|+.-+-++.|...-++++ +..++|... +..||-+| .|.+.++|+.|+..+.-.+-
T Consensus 245 ~YTLQL~Aas~~~~L~~f~~~~~-L~~~~VYqT~RnGkpWYVVvyG~Y~Sr~eAk~Ai~sLPa~lq 309 (327)
T PRK11901 245 HYTLQLSSASRSDTLNAYAKKQN-LSHYHVYETKRDGKPWYVLVSGNYASSAEAKRAIATLPAEVQ 309 (327)
T ss_pred CeEEEeecCCCHHHHHHHHHHcC-cCceEEEEEEECCceEEEEEecCcCCHHHHHHHHHhCCHHHH
Confidence 35566666666777777666776 566666553 35788777 49999999999998875443
No 171
>TIGR00082 rbfA ribosome-binding factor A. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Essential for efficient processing of 16S rRNA. May interact with the 5'terminal helix region of 16S rRNA. Mutants lacking rbfA have a cold-sensitive phenotype.
Probab=43.55 E-value=49 Score=21.62 Aligned_cols=36 Identities=8% Similarity=-0.016 Sum_probs=20.0
Q ss_pred CCceeEEEEeccCCceEEEEEeC-CchHHHHHHhhcC
Q psy11609 24 HGKVSWVKIIGQGGDRYGLVCFK-KADDAEKAILGSH 59 (83)
Q Consensus 24 fG~Itsv~V~~d~~~g~afV~F~-~pEdA~~A~~~~n 59 (83)
+=+||+|.|..|-+.--.||.+- ++++.++++.++|
T Consensus 32 ~vtVt~V~lS~Dl~~AkVyvs~~~~~~~~~~~l~~L~ 68 (114)
T TIGR00082 32 MLTVTKVEVSKDLQHAKVFVDCYGDEEAIDRVVKALN 68 (114)
T ss_pred eEEEeEEEECCCCCEEEEEEEECCChhhHHHHHHHHH
Confidence 34678888877766555555544 3333344444443
No 172
>TIGR02273 16S_RimM 16S rRNA processing protein RimM. This family consists of the bacterial protein RimM (YfjA, 21K), a 30S ribosomal subunit-binding protein implicated in 16S ribsomal RNA processing. It has been partially characterized in Escherichia coli, is found with other translation-associated genes such as trmD. It is broadly distributed among bacteria, including some minimal genomes such the aphid endosymbiont Buchnera aphidicola. The protein contains a PRC-barrel domain that it shares with other protein families (pfam05239) and a unique domain (pfam01782). This model describes the full-length protein. A member from Arabidopsis (plant) has additional N-terminal sequence likely to represent a chloroplast transit peptide.
Probab=43.22 E-value=40 Score=22.96 Aligned_cols=39 Identities=26% Similarity=0.238 Sum_probs=29.2
Q ss_pred ceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCCCccc-cC
Q psy11609 38 DRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDVDFEL-EF 82 (83)
Q Consensus 38 ~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~~~e~-e~ 82 (83)
.+..+|.|+.-++.+.|- .+-|+.|++...+-|+.++ ||
T Consensus 56 ~~~~lv~f~gi~~~~~Ae------~L~g~~l~i~~~~lp~l~e~e~ 95 (165)
T TIGR02273 56 NNKLIVKFEGIDDREAAE------ALKGLELFVPREALPELEEDEY 95 (165)
T ss_pred CCEEEEEECCCCCHHHHH------HhcCCEEEEEHHHCCCCCCCCE
Confidence 346799999999888883 4567888888888776543 65
No 173
>PRK14594 rimM 16S rRNA-processing protein RimM; Provisional
Probab=42.96 E-value=38 Score=23.36 Aligned_cols=39 Identities=18% Similarity=0.210 Sum_probs=27.8
Q ss_pred ceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCCCccc-cC
Q psy11609 38 DRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDVDFEL-EF 82 (83)
Q Consensus 38 ~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~~~e~-e~ 82 (83)
++..++.|+.-++-+.|- .+-|+.|+|...+-|+.++ ||
T Consensus 58 ~~~~lvkf~gi~dr~~Ae------~L~g~~l~v~~~~lp~l~edE~ 97 (166)
T PRK14594 58 NNSLLLKFEEFNAPEPIK------PLIGFELWVDDELASKLEEGEY 97 (166)
T ss_pred CCEEEEEEcCCCCHHHHH------HhcCCEEEEEHHHCCCCCCCcE
Confidence 445799999988888773 3456778888777665444 65
No 174
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=42.57 E-value=29 Score=21.06 Aligned_cols=21 Identities=5% Similarity=0.276 Sum_probs=17.0
Q ss_pred chhhHHHHHhccCCceeEEEE
Q psy11609 12 SLKDGLYHEYKKHGKVSWVKI 32 (83)
Q Consensus 12 ~~~d~L~~eF~kfG~Itsv~V 32 (83)
.+.++|++.|+..|+|.-+.|
T Consensus 6 ~i~~~iR~~fs~lG~I~vLYv 26 (62)
T PF15513_consen 6 EITAEIRQFFSQLGEIAVLYV 26 (62)
T ss_pred HHHHHHHHHHHhcCcEEEEEE
Confidence 356779999999999995555
No 175
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=42.15 E-value=53 Score=26.55 Aligned_cols=44 Identities=20% Similarity=0.095 Sum_probs=34.1
Q ss_pred HHHHHhc----cCCceeEEEEeccC---CceEEEEEeCCchHHHHHHhhcC
Q psy11609 16 GLYHEYK----KHGKVSWVKIIGQG---GDRYGLVCFKKADDAEKAILGSH 59 (83)
Q Consensus 16 ~L~~eF~----kfG~Itsv~V~~d~---~~g~afV~F~~pEdA~~A~~~~n 59 (83)
+|...|- -+|-||++.+--.+ .....++.|.+.++|-+|+.++.
T Consensus 205 dl~~l~~Gs~GtlGIIt~atlkl~p~p~~~~~~~~~f~~~~~a~~~~~~~~ 255 (499)
T PRK11230 205 DLLALFTGSEGMLGVVTEVTVKLLPKPPVARVLLASFDSVEKAGLAVGDII 255 (499)
T ss_pred chHhhhccCCCccEEEEEEEEEEEcCCcceEEEEEECCCHHHHHHHHHHHH
Confidence 4666655 78999988876654 25677899999999999988754
No 176
>CHL00123 rps6 ribosomal protein S6; Validated
Probab=41.89 E-value=89 Score=19.74 Aligned_cols=55 Identities=16% Similarity=0.122 Sum_probs=36.3
Q ss_pred EeeeecCCcchhhH---HHHHhccCC-ceeEEEEeccC---------Cce-EEEEEeCCchHHHHHHhh
Q psy11609 3 LFIYVVSDTSLKDG---LYHEYKKHG-KVSWVKIIGQG---------GDR-YGLVCFKKADDAEKAILG 57 (83)
Q Consensus 3 lfv~k~~d~~~~d~---L~~eF~kfG-~Itsv~V~~d~---------~~g-~afV~F~~pEdA~~A~~~ 57 (83)
|+-..++++.++.. +.....+.| +|.++.-++.. .+| |-++.|+-+-++=+.+++
T Consensus 13 Il~p~l~e~~~~~~~~~~~~~i~~~gg~i~~~~~wG~r~LAY~I~k~~~G~Yv~~~f~~~~~~i~eler 81 (97)
T CHL00123 13 LLKPDLNEEELLKWIENYKKLLRKRGAKNISVQNRGKRKLSYKINKYEDGIYIQMNYSGNGKLVNSLEK 81 (97)
T ss_pred EECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeecCeeeeEEcCCCCEEEEEEEEEEECHHHHHHHHH
Confidence 33444556666655 444566665 88888888755 356 789999977777655544
No 177
>KOG0684|consensus
Probab=41.79 E-value=13 Score=30.67 Aligned_cols=48 Identities=29% Similarity=0.190 Sum_probs=36.7
Q ss_pred HHHHhccCCceeEEEEeccC------CceEEEEEeCC--chHHHHHHhhcCCceec
Q psy11609 17 LYHEYKKHGKVSWVKIIGQG------GDRYGLVCFKK--ADDAEKAILGSHEKHFF 64 (83)
Q Consensus 17 L~~eF~kfG~Itsv~V~~d~------~~g~afV~F~~--pEdA~~A~~~~ng~~~~ 64 (83)
|++..+|||+|=.|.+++.. +++|++|-=.. -=|++.|...++-+.|+
T Consensus 57 l~~~~~K~GdVFTv~l~Gk~~Tfll~p~~~~~v~~~~~~~ld~~~~~~~l~~~vFg 112 (486)
T KOG0684|consen 57 LRECRKKYGDVFTVLLMGKYMTFLLGPEGYDFVFKAKLADLDFEEAYSKLTTPVFG 112 (486)
T ss_pred HHHHHHhcCCeEEEEEcCcEEEEEeCchhhHHHHcCcccccCHHHHHHHhhhhhcC
Confidence 78899999999999999954 78888875544 33567787777766554
No 178
>PF00067 p450: Cytochrome P450 p450 superfamily signature b-class p450 signature mitochondrial p450 signature E-class p450 group I signature E-class p450 group II signature E-class p450 group IV signature; InterPro: IPR001128 Cytochrome P450 enzymes are a superfamily of haem-containing mono-oxygenases that are found in all kingdoms of life, and which show extraordinary diversity in their reaction chemistry. In mammals, these proteins are found primarily in microsomes of hepatocytes and other cell types, where they oxidise steroids, fatty acids and xenobiotics, and are important for the detoxification and clearance of various compounds, as well as for hormone synthesis and breakdown, cholesterol synthesis and vitamin D metabolism. In plants, these proteins are important for the biosynthesis of several compounds such as hormones, defensive compounds and fatty acids. In bacteria, they are important for several metabolic processes, such as the biosynthesis of antibiotic erythromycin in Saccharopolyspora erythraea (Streptomyces erythraeus). Cytochrome P450 enzymes use haem to oxidise their substrates, using protons derived from NADH or NADPH to split the oxygen so a single atom can be added to a substrate. They also require electrons, which they receive from a variety of redox partners. In certain cases, cytochrome P450 can be fused to its redox partner to produce a bi-functional protein, such as with P450BM-3 from Bacillus megaterium [], which has haem and flavin domains. Organisms produce many different cytochrome P450 enzymes (at least 58 in humans), which together with alternative splicing can provide a wide array of enzymes with different substrate and tissue specificities. Individual cytochrome P450 proteins follow the nomenclature: CYP, followed by a number (family), then a letter (subfamily), and another number (protein); e.g. CYP3A4 is the fourth protein in family 3, subfamily A. In general, family members should share >40% identity, while subfamily members should share >55% identity. Cytochrome P450 proteins can also be grouped by two different schemes. One scheme was based on a taxonomic split: class I (prokaryotic/mitochondrial) and class II (eukaryotic microsomes). The other scheme was based on the number of components in the system: class B (3-components) and class E (2-components). These classes merge to a certain degree. Most prokaryotes and mitochondria (and fungal CYP55) have 3-component systems (class I/class B) - a FAD-containing flavoprotein (NAD(P)H-dependent reductase), an iron-sulphur protein and P450. Most eukaryotic microsomes have 2-component systems (class II/class E) - NADPH:P450 reductase (FAD and FMN-containing flavoprotein) and P450. There are exceptions to this scheme, such as 1-component systems that resemble class E enzymes [, , ]. The class E enzymes can be further subdivided into five sequence clusters, groups I-V, each of which may contain more than one cytochrome P450 family (eg, CYP1 and CYP2 are both found in group I). The divergence of the cytochrome P450 superfamily into B- and E-classes, and further divergence into stable clusters within the E-class, appears to be very ancient, occurring before the appearance of eukaryotes. More information about these proteins can be found at Protein of the Month: Cytochrome P450 [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0020037 heme binding, 0055114 oxidation-reduction process; PDB: 2RFC_B 2RFB_A 3EJB_H 3EJE_H 3EJD_H 1N6B_A 1NR6_A 1DT6_A 3EL3_A 3DBG_B ....
Probab=41.20 E-value=45 Score=24.00 Aligned_cols=43 Identities=12% Similarity=0.036 Sum_probs=33.2
Q ss_pred chhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcC
Q psy11609 12 SLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSH 59 (83)
Q Consensus 12 ~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~n 59 (83)
..-+.+....++||+|-.+++.. --+|.-.+||.+++.+..-+
T Consensus 21 ~~~~~~~~~~~kyG~i~~~~~~~-----~~~vvv~~pe~~~~il~~~~ 63 (463)
T PF00067_consen 21 NPHEFFRELHKKYGPIFRIWPGG-----QPIVVVSDPELIKEILRSRS 63 (463)
T ss_dssp HHHHHHHHHHHHHTSEEEEEETT-----EEEEEEESHHHHHHHHTTTT
T ss_pred cHHHHHHHHHHHhCCEEEEeEec-----ccccccccchhhcccccccc
Confidence 34445777889999999888744 56788899999999986643
No 179
>COG5594 Uncharacterized integral membrane protein [Function unknown]
Probab=40.90 E-value=31 Score=30.27 Aligned_cols=30 Identities=20% Similarity=0.274 Sum_probs=24.1
Q ss_pred ceEEEEEeCCchHHHHHHhhcCCceecCee
Q psy11609 38 DRYGLVCFKKADDAEKAILGSHEKHFFGCK 67 (83)
Q Consensus 38 ~g~afV~F~~pEdA~~A~~~~ng~~~~g~~ 67 (83)
...|||+|++.-.|+.|.+..-+..+.|..
T Consensus 357 ~~~~FItFkSq~~Aq~~aQ~~~~sr~~~~~ 386 (827)
T COG5594 357 TKSGFITFKSQASAQIAAQSQIYSRVLGKL 386 (827)
T ss_pred cccEEEEEehhHHHHHHHHhhhhhhhhcce
Confidence 459999999999999999887665555544
No 180
>TIGR01033 DNA-binding regulatory protein, YebC/PmpR family. This model describes a minimally characterized protein family, restricted to bacteria excepting for some eukaryotic sequences that have possible transit peptides. YebC from E. coli is crystallized, and PA0964 from Pseudomonas aeruginosa has been shown to be a sequence-specific DNA-binding regulatory protein.
Probab=39.58 E-value=73 Score=23.59 Aligned_cols=43 Identities=19% Similarity=0.341 Sum_probs=26.6
Q ss_pred eEeeeecCCcchh--hHHHHHhccCCc-e---eEEEEeccCCceEEEEEeCC
Q psy11609 2 ALFIYVVSDTSLK--DGLYHEYKKHGK-V---SWVKIIGQGGDRYGLVCFKK 47 (83)
Q Consensus 2 ~lfv~k~~d~~~~--d~L~~eF~kfG~-I---tsv~V~~d~~~g~afV~F~~ 47 (83)
++.|--++|...+ .+|++.|+|+|= + .+|.-+= ++.|.|.+..
T Consensus 96 aiiVe~lTDN~nRt~~~ir~~f~K~gg~l~~~gsv~~~F---e~kG~i~~~~ 144 (238)
T TIGR01033 96 AIIVECLTDNKNRTASEVRSAFNKNGGSLGEPGSVSYLF---SRKGVIEVPK 144 (238)
T ss_pred EEEEEEecCCHHhHHHHHHHHHHHcCCeeCCCCceeeee---ecceEEEECC
Confidence 4556666666554 449999999973 2 1122111 6678888864
No 181
>KOG2416|consensus
Probab=38.98 E-value=15 Score=31.34 Aligned_cols=69 Identities=12% Similarity=-0.078 Sum_probs=48.6
Q ss_pred EeeeecCCcchhhHHHHHhc-cCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCc-ee--cCeeeEEEec
Q psy11609 3 LFIYVVSDTSLKDGLYHEYK-KHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEK-HF--FGCKIDVSPY 73 (83)
Q Consensus 3 lfv~k~~d~~~~d~L~~eF~-kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~-~~--~g~~i~V~~a 73 (83)
|++.+|.---+---|+.+.. ..|.|.+.| -|.=+--+||.|++.+||-.-.++|||. |- .++-|.+...
T Consensus 447 lhI~nLvRPFTlgQLkelL~rtgg~Vee~W--mDkIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~adf~ 519 (718)
T KOG2416|consen 447 LHIDNLVRPFTLGQLKELLGRTGGNVEEFW--MDKIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIADFV 519 (718)
T ss_pred EeeecccccchHHHHHHHHhhccCchHHHH--HHHhhcceeEecccHHHHHHHHHHHhccccCCCCCceeEeeec
Confidence 45555555555556888887 556666553 3445667999999999999999999995 55 4455666554
No 182
>PF00313 CSD: 'Cold-shock' DNA-binding domain; InterPro: IPR002059 When Escherichia coli is exposed to a temperature drop from 37 to 10 degrees centigrade, a 4-5 hour lag phase occurs, after which growth is resumed at a reduced rate []. During the lag phase, the expression of around 13 proteins, which contain specific DNA-binding regions [], is increased 2-10 fold. These so-called 'cold shock' proteins are thought to help the cell to survive in temperatures lower than optimum growth temperature, by contrast with heat shock proteins, which help the cell to survive in temperatures greater than the optimum, possibly by condensation of the chromosome and organisation of the prokaryotic nucleoid []. A conserved domain of about 70 amino acids has been found in prokaryotic and eukaryotic DNA-binding proteins [, , ]. This domain is known as the 'cold-shock domain' (CSD), part of which is highly similar [] to the RNP-1 RNA-binding motif.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1HZC_A 1I5F_A 1HZ9_B 1C9O_B 1HZB_B 1HZA_A 2HAX_B 2L15_A 2LSS_A 3I2Z_B ....
Probab=38.83 E-value=21 Score=20.41 Aligned_cols=41 Identities=12% Similarity=0.204 Sum_probs=21.5
Q ss_pred cCCceEEEEEeCCch-HH---HHHHhhcC-CceecCeeeEEEecCC
Q psy11609 35 QGGDRYGLVCFKKAD-DA---EKAILGSH-EKHFFGCKIDVSPYHD 75 (83)
Q Consensus 35 d~~~g~afV~F~~pE-dA---~~A~~~~n-g~~~~g~~i~V~~a~g 75 (83)
+..+|||||.-.+.+ |. ..++.... ..+--|-++...+..+
T Consensus 9 ~~~kgyGFI~~~~~~~diFfh~s~~~~~~~~~l~~G~~V~F~~~~~ 54 (66)
T PF00313_consen 9 DDEKGYGFITSDDGGEDIFFHISDLSGNGFRSLKEGDRVEFEVEEG 54 (66)
T ss_dssp ETTTTEEEEEETTSSSEEEEEGGGBCSSSSTS--TTSEEEEEEEEC
T ss_pred ECCCCceEEEEcccceeEEeccccccccccccCCCCCEEEEEEEEC
Confidence 347899999987665 22 22332222 2333566666555543
No 183
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=38.75 E-value=83 Score=19.96 Aligned_cols=44 Identities=14% Similarity=0.213 Sum_probs=26.1
Q ss_pred eEeeeecCCcchhhHHHH-HhccCCceeEEEEeccC-CceEEEEEeC
Q psy11609 2 ALFIYVVSDTSLKDGLYH-EYKKHGKVSWVKIIGQG-GDRYGLVCFK 46 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~-eF~kfG~Itsv~V~~d~-~~g~afV~F~ 46 (83)
.+||++.|. .+.|.|.+ ..+.-++=+-+-+..+. +.||+|-+.-
T Consensus 27 GVyVg~~s~-rVRe~lW~~v~~~~~~G~a~m~~~~~neqG~~~~t~G 72 (86)
T PF09707_consen 27 GVYVGNVSA-RVRERLWERVTEWIGDGSAVMVWSDNNEQGFDFRTLG 72 (86)
T ss_pred CcEEcCCCH-HHHHHHHHHHHhhCCCccEEEEEccCCCCCEEEEEeC
Confidence 479995555 45555555 44434444434444444 6899998883
No 184
>PF08206 OB_RNB: Ribonuclease B OB domain; InterPro: IPR013223 This domain includes the N-terminal OB domain found in ribonuclease B proteins in one or two copies.; PDB: 2ID0_D 2IX1_A 2IX0_A.
Probab=38.13 E-value=19 Score=20.63 Aligned_cols=12 Identities=17% Similarity=0.271 Sum_probs=8.8
Q ss_pred CCceEEEEEeCC
Q psy11609 36 GGDRYGLVCFKK 47 (83)
Q Consensus 36 ~~~g~afV~F~~ 47 (83)
.++|||||.-.+
T Consensus 6 ~~~GfGFv~~~~ 17 (58)
T PF08206_consen 6 HPKGFGFVIPDD 17 (58)
T ss_dssp -SSS-EEEEECT
T ss_pred EcCCCEEEEECC
Confidence 379999999886
No 185
>PRK09507 cspE cold shock protein CspE; Reviewed
Probab=37.75 E-value=34 Score=20.39 Aligned_cols=45 Identities=11% Similarity=0.119 Sum_probs=27.4
Q ss_pred eccCCceEEEEEeCCch-HH---HHHHhhcC-CceecCeeeEEEecCCCC
Q psy11609 33 IGQGGDRYGLVCFKKAD-DA---EKAILGSH-EKHFFGCKIDVSPYHDVD 77 (83)
Q Consensus 33 ~~d~~~g~afV~F~~pE-dA---~~A~~~~n-g~~~~g~~i~V~~a~g~~ 77 (83)
.-+..+|||||.=.+.. |. -.|+..-+ ...--|..+..+..+++.
T Consensus 10 ~f~~~kGyGFI~~~~g~~dvfvH~s~l~~~g~~~l~~G~~V~f~~~~~~~ 59 (69)
T PRK09507 10 WFNESKGFGFITPEDGSKDVFVHFSAIQTNGFKTLAEGQRVEFEITNGAK 59 (69)
T ss_pred EEeCCCCcEEEecCCCCeeEEEEeecccccCCCCCCCCCEEEEEEEECCC
Confidence 34558999999765532 33 34554322 245578888877777553
No 186
>TIGR01873 cas_CT1978 CRISPR-associated endoribonuclease Cas2, E. coli subfamily. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model represents a minor branch of the Cas2 family of CRISPR-associated endonuclease, whereas most Cas2 proteins are modeled instead by TIGR01573. This form of Cas2 is characteristic for the Ecoli subtype of CRISPR/Cas locus.
Probab=37.69 E-value=70 Score=20.44 Aligned_cols=44 Identities=11% Similarity=0.286 Sum_probs=27.3
Q ss_pred eEeeeecCCcchhhHHHHHhccC----CceeEEEEeccC-CceEEEEEeCCc
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKH----GKVSWVKIIGQG-GDRYGLVCFKKA 48 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kf----G~Itsv~V~~d~-~~g~afV~F~~p 48 (83)
.+||++.| ..+.|.|.+.-.+. |.+. -+..++ +.||+|-+.-.+
T Consensus 27 GVyVg~~s-~rVRe~lW~~v~~~~~~~G~av--m~~~~~~e~G~~~~t~G~~ 75 (87)
T TIGR01873 27 GVYVGGVS-ASVRERIWDYLAQHCPPKGSLV--ITWSSNTCPGFEFFTLGEN 75 (87)
T ss_pred CcEEcCCC-HHHHHHHHHHHHHhCCCCccEE--EEEeCCCCCCcEEEecCCC
Confidence 57999554 55666666655544 4443 333333 688999888764
No 187
>PRK00122 rimM 16S rRNA-processing protein RimM; Provisional
Probab=37.65 E-value=55 Score=22.51 Aligned_cols=39 Identities=26% Similarity=0.383 Sum_probs=28.0
Q ss_pred ceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCCCc-cccC
Q psy11609 38 DRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDVDF-ELEF 82 (83)
Q Consensus 38 ~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~~~-e~e~ 82 (83)
++..+|.|+.-.+.+.|- .+-|+.|+|.-.+-|+. |+||
T Consensus 61 ~~~~lvkf~gi~~~~~Ae------~l~g~~l~i~~~~lp~l~~~e~ 100 (172)
T PRK00122 61 KGFLIVKFEGVDDRNAAE------ALKGCELFVPRSQLPELEEDEY 100 (172)
T ss_pred CCEEEEEECCCCCHHHHH------HhCCCEEEEEHHHCCCCCCCCE
Confidence 345799999998888883 45677888887776664 3465
No 188
>PF12654 DUF3786: Domain of unknown function (DUF3786); InterPro: IPR024264 This presumed domain is functionally uncharacterised and is found in bacteria. Proteins containing this domain are typically between 201 and 257 amino acids in length. Some proteins also contains an iron-sulphur cluster.
Probab=37.49 E-value=56 Score=22.63 Aligned_cols=29 Identities=7% Similarity=-0.126 Sum_probs=24.5
Q ss_pred CchHHHHHHhhcCCceecCe-------------eeEEEecCC
Q psy11609 47 KADDAEKAILGSHEKHFFGC-------------KIDVSPYHD 75 (83)
Q Consensus 47 ~pEdA~~A~~~~ng~~~~g~-------------~i~V~~a~g 75 (83)
+++.-.+|...+.|+.+... ||.+.+|+|
T Consensus 102 ~~~~l~~a~~~LGg~~~~~g~D~s~~~~~lP~ipl~~~~W~g 143 (179)
T PF12654_consen 102 KPEKLKEAAEKLGGEPVDMGADVSYRFPALPKIPLLFIFWDG 143 (179)
T ss_pred CHHHHHHHHHHcCCEECCCCCCEEEEEecCCCceEEEEEecC
Confidence 57888999999999888655 888888988
No 189
>cd00018 AP2 DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein). In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies.
Probab=37.44 E-value=24 Score=20.04 Aligned_cols=22 Identities=32% Similarity=0.377 Sum_probs=18.4
Q ss_pred CceEEEEEeCCchHHHHHHhhc
Q psy11609 37 GDRYGLVCFKKADDAEKAILGS 58 (83)
Q Consensus 37 ~~g~afV~F~~pEdA~~A~~~~ 58 (83)
.+..-+-.|.++|||..|....
T Consensus 24 gk~~~lG~f~t~eeAa~Ayd~a 45 (61)
T cd00018 24 GRRIWLGTFDTAEEAARAYDRA 45 (61)
T ss_pred CceEccCCCCCHHHHHHHHHHH
Confidence 5678888999999998888664
No 190
>cd02106 Band_7 The band 7 domain of flotillin (reggie) like proteins. This group contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic HflK/C plays a role i
Probab=37.10 E-value=79 Score=18.79 Aligned_cols=39 Identities=10% Similarity=0.340 Sum_probs=27.3
Q ss_pred cchhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhc
Q psy11609 11 TSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGS 58 (83)
Q Consensus 11 ~~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ 58 (83)
+.+++.|...+++|| | .|. .+.+-..+-|++-.+|+...
T Consensus 82 ~~v~~~l~~~~~~~G-i---~i~-----~v~i~~i~~~~~~~~ai~~~ 120 (121)
T cd02106 82 AEVREALQEDLDKYG-I---EVV-----DVRIKDIDPPEEVQEAMEDR 120 (121)
T ss_pred HHHHHHHHHHHHhcC-C---EEE-----EEEEEecCCCHHHHHHHHhh
Confidence 345677888999999 3 332 25666777888888887653
No 191
>PRK05783 hypothetical protein; Provisional
Probab=37.06 E-value=1.1e+02 Score=19.33 Aligned_cols=47 Identities=11% Similarity=0.189 Sum_probs=30.7
Q ss_pred chhhHHHHHhccCCceeEEEEeccCCceEEEEEeC--CchHHHHHHhhcCCce-ecC
Q psy11609 12 SLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFK--KADDAEKAILGSHEKH-FFG 65 (83)
Q Consensus 12 ~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~--~pEdA~~A~~~~ng~~-~~g 65 (83)
+++..|.+. -||.|.+|++-+ +=-+.+. ++|+|.+-++.|=.++ |..
T Consensus 22 aI~~aL~~l--g~~~V~~VRvGK-----~iel~l~~~~~e~a~~~v~~mc~~LrLaN 71 (84)
T PRK05783 22 TIQRYVIER--YTGNIIEVRAGK-----YLVFKIEANSPEEAKELALKIAREGRLYN 71 (84)
T ss_pred HHHHHHHHc--CCCCcceEEeeE-----EEEEEEcCCCHHHHHHHHHHHHHhcCcCC
Confidence 344445443 388899999855 5556664 5577888888887776 443
No 192
>PRK15464 cold shock-like protein CspH; Provisional
Probab=36.89 E-value=64 Score=19.46 Aligned_cols=44 Identities=7% Similarity=0.067 Sum_probs=29.5
Q ss_pred ccCCceEEEEEeCCc-hHH---HHHHhhcCC-ceecCeeeEEEecCCCC
Q psy11609 34 GQGGDRYGLVCFKKA-DDA---EKAILGSHE-KHFFGCKIDVSPYHDVD 77 (83)
Q Consensus 34 ~d~~~g~afV~F~~p-EdA---~~A~~~~ng-~~~~g~~i~V~~a~g~~ 77 (83)
-+..+|||||.=.+. +|+ -.|++...- ..--|..+..+..+++.
T Consensus 12 fn~~KGfGFI~~~~g~~DvFvH~s~l~~~g~~~l~~G~~V~f~v~~~~k 60 (70)
T PRK15464 12 FDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLR 60 (70)
T ss_pred EECCCCeEEEccCCCCccEEEEehhehhcCCCCCCCCCEEEEEEEECCC
Confidence 455899999976553 454 556644322 46688999888887654
No 193
>PF02033 RBFA: Ribosome-binding factor A; InterPro: IPR000238 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosome-binding factor A [] (gene rbfA) is a bacterial protein that associates with free 30S ribosomal subunits. It does not associate with 30S subunits that are part of 70S ribosomes or polysomes. It is essential for efficient processing of 16S rRNA. Ribosome-binding factor A is a protein of from 13 to 15 Kd which is found in most bacteria. A putative chloroplastic form seems to exist in plants.; GO: 0006364 rRNA processing; PDB: 2R1C_A 2DYJ_B 2KZF_A 2E7G_A 1JOS_A 1KKG_A 1PA4_A.
Probab=36.44 E-value=78 Score=19.81 Aligned_cols=37 Identities=11% Similarity=0.083 Sum_probs=23.2
Q ss_pred cCCceeEEEEeccCCceEEEEEeC-CchHHHHHHhhcC
Q psy11609 23 KHGKVSWVKIIGQGGDRYGLVCFK-KADDAEKAILGSH 59 (83)
Q Consensus 23 kfG~Itsv~V~~d~~~g~afV~F~-~pEdA~~A~~~~n 59 (83)
..=+|+.|.+..|-+.---|+..- ++++-++++..+|
T Consensus 27 ~~vtIt~V~ls~Dl~~a~Vy~~~~~~~~~~~~~~~~L~ 64 (104)
T PF02033_consen 27 KLVTITRVELSPDLSHAKVYVSILGDEEEQEEVLEALN 64 (104)
T ss_dssp HCEEEEEEEECTTSSEEEEEEEESSSHHHHHHHHHHHH
T ss_pred ceEEEEEEEECCCCCEEEEEEEEecCchhHHHHHHHHH
Confidence 455788888877766555555553 5566666655554
No 194
>PLN02774 brassinosteroid-6-oxidase
Probab=34.93 E-value=43 Score=25.84 Aligned_cols=36 Identities=8% Similarity=0.112 Sum_probs=29.1
Q ss_pred HHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhh
Q psy11609 17 LYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILG 57 (83)
Q Consensus 17 L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~ 57 (83)
+.+.+++||+|-++++.. .-+|...+|+.|+..+..
T Consensus 56 ~~~~~~~yG~i~~~~~g~-----~~~v~i~~p~~~~~il~~ 91 (463)
T PLN02774 56 MKNQRLRYGSFFKSHILG-----CPTIVSMDPELNRYILMN 91 (463)
T ss_pred HHHHHHHhccCccceecC-----CCeEEEeCHHHHHHHHcC
Confidence 566788999998888743 467889999999999864
No 195
>PRK14592 rimM 16S rRNA-processing protein RimM; Provisional
Probab=34.90 E-value=62 Score=22.20 Aligned_cols=39 Identities=15% Similarity=0.059 Sum_probs=28.7
Q ss_pred ceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCCCc-cccC
Q psy11609 38 DRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDVDF-ELEF 82 (83)
Q Consensus 38 ~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~~~-e~e~ 82 (83)
++..+|.|+.-.+.+.|- .+-|+.|+|...+-|+- |+||
T Consensus 53 ~~~~lv~f~gi~~~~~Ae------~l~g~~l~v~~~~lp~l~e~e~ 92 (165)
T PRK14592 53 ANLVIAKISGINSRTEAE------LLRNKKLYVERSKLPNLNEDEF 92 (165)
T ss_pred CCEEEEEEcCCCCHHHHH------HhcCCEEEEEHHHCCCCCCCCE
Confidence 456799999999888883 35677888888886654 4465
No 196
>TIGR03293 PhnG_redo phosphonate C-P lyase system protein PhnG. PhnH is a component of the C-P lyase system (GenProp0232) for the catabolism of phosphonate compounds. The specific function of this component is unknown. This model is based on Pfam model pfam06754.2, and has been broadened to include sequences missed by that model which are clearly true positive hits based on genome context.
Probab=34.44 E-value=84 Score=21.59 Aligned_cols=28 Identities=21% Similarity=0.232 Sum_probs=22.0
Q ss_pred ceeEEEEec-cCCceEEEEEeCCchHHHH
Q psy11609 26 KVSWVKIIG-QGGDRYGLVCFKKADDAEK 53 (83)
Q Consensus 26 ~Itsv~V~~-d~~~g~afV~F~~pEdA~~ 53 (83)
+||.|.|.. +...|||+|.=+++..|.-
T Consensus 62 tVTr~~V~L~~g~~G~g~v~Gr~~~~A~~ 90 (144)
T TIGR03293 62 TVTRAAVRLNDGTEGYAYVLGRDKRHAEL 90 (144)
T ss_pred EEEEEEEEeCCCCeEEEEEecCCHHHHHH
Confidence 467888773 4578999999999998853
No 197
>PRK10943 cold shock-like protein CspC; Provisional
Probab=34.41 E-value=75 Score=18.87 Aligned_cols=45 Identities=13% Similarity=0.134 Sum_probs=29.4
Q ss_pred eccCCceEEEEEeCCc-hHH---HHHHhhcC-CceecCeeeEEEecCCCC
Q psy11609 33 IGQGGDRYGLVCFKKA-DDA---EKAILGSH-EKHFFGCKIDVSPYHDVD 77 (83)
Q Consensus 33 ~~d~~~g~afV~F~~p-EdA---~~A~~~~n-g~~~~g~~i~V~~a~g~~ 77 (83)
.-+..+|||||.=.+. +|. -.|+.... ...-.|.++..++.+++.
T Consensus 10 ~f~~~kGfGFI~~~~g~~dvFvH~s~l~~~g~~~l~~G~~V~f~~~~~~~ 59 (69)
T PRK10943 10 WFNESKGFGFITPADGSKDVFVHFSAIQGNGFKTLAEGQNVEFEIQDGQK 59 (69)
T ss_pred EEeCCCCcEEEecCCCCeeEEEEhhHccccCCCCCCCCCEEEEEEEECCC
Confidence 3456799999986543 344 56665433 345688888888877653
No 198
>PRK09937 stationary phase/starvation inducible regulatory protein CspD; Provisional
Probab=34.23 E-value=35 Score=20.83 Aligned_cols=43 Identities=12% Similarity=0.209 Sum_probs=25.1
Q ss_pred cCCceEEEEEeCC-chHH---HHHHhhcC-CceecCeeeEEEecCCCC
Q psy11609 35 QGGDRYGLVCFKK-ADDA---EKAILGSH-EKHFFGCKIDVSPYHDVD 77 (83)
Q Consensus 35 d~~~g~afV~F~~-pEdA---~~A~~~~n-g~~~~g~~i~V~~a~g~~ 77 (83)
+..+|||||+=.+ .+|+ -.|+.... ...-.|..+..++.+++.
T Consensus 10 n~~KGfGFI~~~~gg~dVFvH~s~i~~~g~~~l~~G~~V~f~~~~~~~ 57 (74)
T PRK09937 10 NNAKGFGFICPEGGGEDIFAHYSTIQMDGYRTLKAGQSVQFDVHQGPK 57 (74)
T ss_pred eCCCCeEEEeeCCCCccEEEEEeeccccCCCCCCCCCEEEEEEEECCC
Confidence 4579999995433 2333 23443222 345578888877777654
No 199
>smart00380 AP2 DNA-binding domain in plant proteins such as APETALA2 and EREBPs.
Probab=34.17 E-value=31 Score=19.94 Aligned_cols=23 Identities=30% Similarity=0.355 Sum_probs=18.7
Q ss_pred CceEEEEEeCCchHHHHHHhhcC
Q psy11609 37 GDRYGLVCFKKADDAEKAILGSH 59 (83)
Q Consensus 37 ~~g~afV~F~~pEdA~~A~~~~n 59 (83)
.+..-+-.|.++|||..|....-
T Consensus 23 ~k~~~lG~f~t~eeAa~Ayd~a~ 45 (64)
T smart00380 23 GKRVWLGTFDTAEEAARAYDRAA 45 (64)
T ss_pred CcEEecCCCCCHHHHHHHHHHHH
Confidence 46678889999999998887653
No 200
>KOG0156|consensus
Probab=34.06 E-value=83 Score=25.47 Aligned_cols=50 Identities=14% Similarity=0.120 Sum_probs=40.1
Q ss_pred hhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCceecCeee
Q psy11609 13 LKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKI 68 (83)
Q Consensus 13 ~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i 68 (83)
....|...-++||+|-.+++-. .=.|--+++|-|++|+.. ||..+.+||.
T Consensus 48 ~h~~~~~ls~~yGpi~tl~lG~-----~~~Vviss~~~akE~l~~-~d~~fa~Rp~ 97 (489)
T KOG0156|consen 48 PHRSFRKLSKKYGPVFTLRLGS-----VPVVVISSYEAAKEVLVK-QDLEFADRPD 97 (489)
T ss_pred hhHHHHHHHHHhCCeEEEEecC-----ceEEEECCHHHHHHHHHh-CCccccCCCC
Confidence 4455777778999999888833 357778899999999855 7999999996
No 201
>PLN02805 D-lactate dehydrogenase [cytochrome]
Probab=33.27 E-value=70 Score=26.42 Aligned_cols=44 Identities=16% Similarity=0.126 Sum_probs=34.8
Q ss_pred HHHHHh----ccCCceeEEEEeccC---CceEEEEEeCCchHHHHHHhhcC
Q psy11609 16 GLYHEY----KKHGKVSWVKIIGQG---GDRYGLVCFKKADDAEKAILGSH 59 (83)
Q Consensus 16 ~L~~eF----~kfG~Itsv~V~~d~---~~g~afV~F~~pEdA~~A~~~~n 59 (83)
+|++.| .-+|-||++.+--.+ ....+++.|.+.++|-+|+..+.
T Consensus 282 dL~~l~~GseGtLGIIT~~tlrl~p~P~~~~~~~~~f~~~~~a~~av~~i~ 332 (555)
T PLN02805 282 DLTRLVIGSEGTLGVITEVTLRLQKIPQHSVVAMCNFPTIKDAADVAIATM 332 (555)
T ss_pred cHHHHhccCCCceEEEEEEEEEeecCCcceEEEEEEcCCHHHHHHHHHHHH
Confidence 577775 479999999886443 37788999999999999887743
No 202
>PLN03234 cytochrome P450 83B1; Provisional
Probab=32.84 E-value=74 Score=24.63 Aligned_cols=48 Identities=21% Similarity=0.165 Sum_probs=35.1
Q ss_pred HHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCceecCeeeE
Q psy11609 16 GLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKID 69 (83)
Q Consensus 16 ~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~ 69 (83)
-+.+..++||+|-.+++.. --.|...+||.++..+.. ++..+.++|..
T Consensus 53 ~~~~~~~~yG~~~~~~lg~-----~~~vvv~dpe~~~~il~~-~~~~f~~r~~~ 100 (499)
T PLN03234 53 FLFRLSKLYGPIFTMKIGG-----RRLAVISSAELAKELLKT-QDLNFTARPLL 100 (499)
T ss_pred HHHHHHHHcCCeEEEEecC-----cCEEEECCHHHHHHHHHh-CCccccCCCCc
Confidence 4666778999998887643 235889999999999864 55566666654
No 203
>PF13421 Band_7_1: SPFH domain-Band 7 family
Probab=32.50 E-value=79 Score=22.75 Aligned_cols=40 Identities=23% Similarity=0.502 Sum_probs=30.7
Q ss_pred cchhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcC
Q psy11609 11 TSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSH 59 (83)
Q Consensus 11 ~~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~n 59 (83)
+.+++.|..+|.+|| +.|.. |+.-..+-||+.+++++...
T Consensus 168 ~~~~~~l~~~~~~~G----i~l~~-----f~I~~i~~pee~~~~i~~~~ 207 (211)
T PF13421_consen 168 EALKEKLNPEFERYG----IELVD-----FGIESISFPEEVQKAIDKRA 207 (211)
T ss_pred HHHHHHHHHHHHhcC----cEEEE-----EEEEeecCCHHHHHHHHHHH
Confidence 456777889999999 33433 77788899999999987654
No 204
>PF02222 ATP-grasp: ATP-grasp domain; InterPro: IPR003135 The ATP-grasp domain has an unusual nucleotide-binding fold, also referred to as palmate, and is found in a superfamily of enzymes including D-alanine-D-alanine ligase, glutathione synthetase, biotin carboxylase, and carbamoyl phosphate synthetase, the ribosomal protein S6 modification enzyme (RimK), urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis. This family does not contain all known ATP-grasp domain members. All the enzymes of this family possess ATP-dependent carboxylate-amine ligase activity, and their catalytic mechanisms are likely to include acylphosphate intermediates.; PDB: 3K5H_C 3K5I_C 3AX6_A 3Q2O_B 3QFF_B 3R5H_A 3ORQ_B 3ORR_B 4E4T_B 2Z04_A ....
Probab=32.44 E-value=77 Score=22.10 Aligned_cols=62 Identities=24% Similarity=0.224 Sum_probs=40.5
Q ss_pred hHHHHHhccCC-ceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCC-ce-----e-cCeeeEEEecCCCC
Q psy11609 15 DGLYHEYKKHG-KVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHE-KH-----F-FGCKIDVSPYHDVD 77 (83)
Q Consensus 15 d~L~~eF~kfG-~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng-~~-----~-~g~~i~V~~a~g~~ 77 (83)
++|.+...++| +.. +|-..-+-.|-|-+--++++|.++|+..+.+ .. + +.++|.|-.+-..+
T Consensus 18 ~~l~~a~~~iG~P~v-lK~~~~GYDGkGq~~i~~~~dl~~a~~~~~~~~~ilE~~v~f~~EiSvivaR~~~ 87 (172)
T PF02222_consen 18 EDLEEAAESIGFPAV-LKTRRGGYDGKGQFVIRSEEDLEKAWQELGGGPCILEEFVPFDREISVIVARDQD 87 (172)
T ss_dssp HHHHHHHHHHTSSEE-EEESSSSCTTTTEEEESSGGGHHHHHHHTTTSCEEEEE---ESEEEEEEEEEETT
T ss_pred HHHHHHHHHcCCCEE-EEccCcCcCCCccEEECCHHHHHHHHHhcCCCcEEEEeccCCcEEEEEEEEEcCC
Confidence 46777777777 554 5554445577777788999999999998832 11 1 45566555554333
No 205
>PF05573 NosL: NosL; InterPro: IPR008719 NosL is one of the accessory proteins of the nos (nitrous oxide reductase) gene cluster. NosL is a monomeric protein of 18,540 MW that specifically and stoichiometrically binds Cu(I). The copper ion in NosL is ligated by a Cys residue, and one Met and one His are thought to serve as the other ligands. It is possible that NosL is a copper chaperone involved in metallocentre assembly []. This entry also contains HTH-type transcriptional repressors, including YcnK. YcnK may act as a negative transcriptional regulator of YcnJ in the presence of copper and may use copper as a corepressor. The gene, ycnK, is significantly induced under copper-limiting conditions.; PDB: 2HQ3_A 2HPU_A.
Probab=32.34 E-value=36 Score=23.00 Aligned_cols=26 Identities=23% Similarity=0.190 Sum_probs=18.1
Q ss_pred ceEEEEEeCCchHHHHHHhhcCCcee
Q psy11609 38 DRYGLVCFKKADDAEKAILGSHEKHF 63 (83)
Q Consensus 38 ~g~afV~F~~pEdA~~A~~~~ng~~~ 63 (83)
=|..++.|.+.++|++-..+-.|+.+
T Consensus 114 Mg~~~~aF~~~~~A~~F~~~~GG~v~ 139 (149)
T PF05573_consen 114 MGPDLIAFASKEDAEAFAKEHGGKVL 139 (149)
T ss_dssp TS--EEEES-HHHHHHHHHHTEEEEE
T ss_pred CCCcccccCCHHHHHHHHHHcCCEEe
Confidence 36889999999999998877655543
No 206
>cd04933 ACT_AK1-AT_1 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the first of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine. This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. Like the Escherichia coli AKIII (LysC), Arabidopsis AK1 binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. A loop in common is involved in the binding of both Lys and S-adenosylmethionine providing an explanation for the synergistic inhibition by these effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=32.00 E-value=27 Score=21.39 Aligned_cols=13 Identities=23% Similarity=0.289 Sum_probs=11.2
Q ss_pred HHHHHhccCCcee
Q psy11609 16 GLYHEYKKHGKVS 28 (83)
Q Consensus 16 ~L~~eF~kfG~It 28 (83)
.|..+|++||.+.
T Consensus 63 ~~~~~~~~~~~~~ 75 (78)
T cd04933 63 HVVEELEKDAVVN 75 (78)
T ss_pred HHHHHHHHcCeEE
Confidence 6888999999775
No 207
>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP.
Probab=31.74 E-value=2.1e+02 Score=21.30 Aligned_cols=58 Identities=17% Similarity=0.120 Sum_probs=34.7
Q ss_pred hHHHHHhccCC-ceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCC------ceec-CeeeEEEec
Q psy11609 15 DGLYHEYKKHG-KVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHE------KHFF-GCKIDVSPY 73 (83)
Q Consensus 15 d~L~~eF~kfG-~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng------~~~~-g~~i~V~~a 73 (83)
+++....+++| ++- +|-......+-|...-++++|++.|+..+.+ +.+. |+.+.|...
T Consensus 123 ~~~~~~~~~~g~P~v-vKp~~~g~~g~Gv~~v~~~~el~~a~~~~~~~~~lvEe~I~~~~E~sv~~~ 188 (352)
T TIGR01161 123 EELDAALQELGFPVV-LKARTGGYDGRGQYRIRNEADLPQAAKELGDRECIVEEFVPFERELSVIVA 188 (352)
T ss_pred HHHHHHHHHcCCCEE-EEeCCCCCCCCCEEEECCHHHHHHHHHhcCCCcEEEEecCCCCeEEEEEEE
Confidence 34555555666 554 5543322244566667899999999988753 2334 566666543
No 208
>PRK12378 hypothetical protein; Provisional
Probab=31.10 E-value=1.4e+02 Score=22.20 Aligned_cols=42 Identities=17% Similarity=0.380 Sum_probs=25.1
Q ss_pred eEeeeecCCcchhh--HHHHHhccCC-ce---eEEEEeccCCceEEEEEeC
Q psy11609 2 ALFIYVVSDTSLKD--GLYHEYKKHG-KV---SWVKIIGQGGDRYGLVCFK 46 (83)
Q Consensus 2 ~lfv~k~~d~~~~d--~L~~eF~kfG-~I---tsv~V~~d~~~g~afV~F~ 46 (83)
++.|--++|...+- +|++.|+|+| .+ .||.-+= ++.|.|.+.
T Consensus 93 aiiVe~lTDN~nRt~~~vr~~f~K~gg~l~~~gsv~~~F---e~kG~i~i~ 140 (235)
T PRK12378 93 MVIVECLTDNVNRTVANVRSAFNKNGGNLGTSGSVAFMF---DHKGVFVFE 140 (235)
T ss_pred EEEEEECCCCHHHHHHHHHHHHhhcCCeECCCCceeeee---ecceEEEeC
Confidence 45566677766554 4999999995 22 1222211 556777775
No 209
>COG0182 Predicted translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=31.06 E-value=90 Score=24.82 Aligned_cols=31 Identities=26% Similarity=0.127 Sum_probs=27.9
Q ss_pred EEEEeccC--CceEEEEEeCCchHHHHHHhhcC
Q psy11609 29 WVKIIGQG--GDRYGLVCFKKADDAEKAILGSH 59 (83)
Q Consensus 29 sv~V~~d~--~~g~afV~F~~pEdA~~A~~~~n 59 (83)
+|++..+. +..+-+|..++.||.-.|+..|-
T Consensus 13 ~v~llDQr~LP~e~~~v~~~~~~dva~AIk~M~ 45 (346)
T COG0182 13 SVKLLDQRLLPFEEKYVECKTYEDVAEAIKDMV 45 (346)
T ss_pred eEEEEecccCCceEEEEEeccHHHHHHHHHhhh
Confidence 68888877 89999999999999999999884
No 210
>PRK13817 ribosome-binding factor A; Provisional
Probab=30.96 E-value=87 Score=20.66 Aligned_cols=35 Identities=14% Similarity=0.097 Sum_probs=20.6
Q ss_pred CCceeEEEEeccCCceEEEEEeC-----CchHHHHHHhhcCC
Q psy11609 24 HGKVSWVKIIGQGGDRYGLVCFK-----KADDAEKAILGSHE 60 (83)
Q Consensus 24 fG~Itsv~V~~d~~~g~afV~F~-----~pEdA~~A~~~~ng 60 (83)
+-+||.|.|..|-+ +|-|.|+ +.+++-+|++...|
T Consensus 31 ~vtVt~V~vS~Dl~--~AkVyvs~~~~~~~~~~~~~L~~a~g 70 (119)
T PRK13817 31 KISLTAVSISPDLK--QAKVFYSLLENQNEKEVQKALNKATG 70 (119)
T ss_pred ceEEeEEEECCCCC--EEEEEEEECCCccHHHHHHHHHHhHH
Confidence 57888888877654 5555554 23344455555544
No 211
>PRK09120 p-hydroxycinnamoyl CoA hydratase/lyase; Validated
Probab=30.84 E-value=51 Score=24.20 Aligned_cols=25 Identities=16% Similarity=0.296 Sum_probs=19.9
Q ss_pred HhccCCceeEEEEeccCCceEEEEEeCCch
Q psy11609 20 EYKKHGKVSWVKIIGQGGDRYGLVCFKKAD 49 (83)
Q Consensus 20 eF~kfG~Itsv~V~~d~~~g~afV~F~~pE 49 (83)
.|++|+.|. +.+ ..+++.|++.+|+
T Consensus 3 ~~~~~~~i~-~~~----~~~va~itlnrp~ 27 (275)
T PRK09120 3 YENRWDTVK-VEV----EDGIAWVTLNRPE 27 (275)
T ss_pred cccccccEE-EEE----ECCEEEEEecCcc
Confidence 478899886 554 4679999999996
No 212
>PRK00110 hypothetical protein; Validated
Probab=30.55 E-value=1.3e+02 Score=22.32 Aligned_cols=43 Identities=21% Similarity=0.437 Sum_probs=25.9
Q ss_pred eEeeeecCCcchhh--HHHHHhccCC-ce---eEEEEeccCCceEEEEEeCC
Q psy11609 2 ALFIYVVSDTSLKD--GLYHEYKKHG-KV---SWVKIIGQGGDRYGLVCFKK 47 (83)
Q Consensus 2 ~lfv~k~~d~~~~d--~L~~eF~kfG-~I---tsv~V~~d~~~g~afV~F~~ 47 (83)
++.|--++|...+- +|++.|+|+| .+ .||.-+= ++.|.|.|..
T Consensus 96 aiiVe~lTDN~nRt~~~vR~~f~K~gG~l~~~Gsv~~~F---e~kG~i~~~~ 144 (245)
T PRK00110 96 AIIVEALTDNRNRTAAEVRHAFSKNGGNLGETGSVSYMF---DRKGVIVIEP 144 (245)
T ss_pred EEEEEEecCCHHHHHHHHHHHHHhcCceeCCCcceEEEe---ccceEEEeCC
Confidence 45566666665544 4999999995 33 1222211 5677888864
No 213
>cd01947 Guanosine_kinase_like Guanosine kinase-like sugar kinases. Found in bacteria and archaea, the guanosine kinase-like group is part of the ribokinase/pfkB sugar kinase superfamily. Its oligomerization state is unknown at this time.
Probab=30.52 E-value=1.3e+02 Score=20.93 Aligned_cols=44 Identities=11% Similarity=0.033 Sum_probs=31.0
Q ss_pred eEeeeecCCcchhhHHHHHhccCCceeEEEEeccCCceEEEEEeC
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFK 46 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~ 46 (83)
+.+++++.+|..-+.+.+++++ |-+++..+..+.+.++.++...
T Consensus 53 ~~~i~~vG~D~~g~~i~~~l~~-~~~~~~~~~~~~~t~~~~~~~~ 96 (265)
T cd01947 53 VRFFSNLGRDEIGIQSLEELES-GGDKHTVAWRDKPTRKTLSFID 96 (265)
T ss_pred eEEEEEecCChHHHHHHHHHHh-cCCcceEEecCCCCceEEEEEC
Confidence 4578899999998889999999 7666554444444566655543
No 214
>PRK15463 cold shock-like protein CspF; Provisional
Probab=30.29 E-value=1.3e+02 Score=18.03 Aligned_cols=44 Identities=16% Similarity=0.161 Sum_probs=29.0
Q ss_pred ccCCceEEEEEeCC-chHH---HHHHhhc-CCceecCeeeEEEecCCCC
Q psy11609 34 GQGGDRYGLVCFKK-ADDA---EKAILGS-HEKHFFGCKIDVSPYHDVD 77 (83)
Q Consensus 34 ~d~~~g~afV~F~~-pEdA---~~A~~~~-ng~~~~g~~i~V~~a~g~~ 77 (83)
-+..+|||||.=.+ .+|+ -.|+... ....-.|..+..++.++..
T Consensus 12 fn~~kGfGFI~~~~g~~DvFvH~sal~~~g~~~l~~G~~V~f~v~~~~~ 60 (70)
T PRK15463 12 FDGKSGKGLITPSDGRKDVQVHISALNLRDAEELTTGLRVEFCRINGLR 60 (70)
T ss_pred EeCCCceEEEecCCCCccEEEEehhhhhcCCCCCCCCCEEEEEEEECCC
Confidence 35579999997654 3444 4666554 4456688888888777543
No 215
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=30.12 E-value=90 Score=19.87 Aligned_cols=33 Identities=15% Similarity=0.286 Sum_probs=23.4
Q ss_pred EEEEeCCchHHHHHHhhcCCc-eecCeeeEEEec
Q psy11609 41 GLVCFKKADDAEKAILGSHEK-HFFGCKIDVSPY 73 (83)
Q Consensus 41 afV~F~~pEdA~~A~~~~ng~-~~~g~~i~V~~a 73 (83)
|+|+|..++=|++-++...-. .+.++.+.|...
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~ 34 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVS 34 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEE
Confidence 789999999998887654443 456666665543
No 216
>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA. NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is
Probab=30.06 E-value=71 Score=20.34 Aligned_cols=47 Identities=13% Similarity=0.263 Sum_probs=34.9
Q ss_pred cCCcchhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcC
Q psy11609 8 VSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSH 59 (83)
Q Consensus 8 ~~d~~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~n 59 (83)
.+...+.+.+++.|+--.+++ ++...+ | .+|+..+.+|-+.|++...
T Consensus 22 i~f~dL~~kIrdkf~~~~~~~-iKykDE---G-D~iti~sq~DLd~Ai~~a~ 68 (86)
T cd06408 22 TGFADFEDKIRDKFGFKRRLK-IKMKDD---G-DMITMGDQDDLDMAIDTAR 68 (86)
T ss_pred CCHHHHHHHHHHHhCCCCceE-EEEEcC---C-CCccccCHHHHHHHHHHHH
Confidence 445566667888887656666 776555 3 7899999999999998765
No 217
>PRK10354 RNA chaperone/anti-terminator; Provisional
Probab=29.52 E-value=63 Score=19.20 Aligned_cols=44 Identities=14% Similarity=0.092 Sum_probs=23.9
Q ss_pred eccCCceEEEEEeCCc-hHH---HHHHhhcC-CceecCeeeEEEecCCC
Q psy11609 33 IGQGGDRYGLVCFKKA-DDA---EKAILGSH-EKHFFGCKIDVSPYHDV 76 (83)
Q Consensus 33 ~~d~~~g~afV~F~~p-EdA---~~A~~~~n-g~~~~g~~i~V~~a~g~ 76 (83)
.-+..+|||||.=.+- +|. ..|+.... ...--|..+..+..++.
T Consensus 11 ~f~~~kGfGFI~~~~g~~dvfvH~s~l~~~g~~~l~~G~~V~f~~~~~~ 59 (70)
T PRK10354 11 WFNADKGFGFITPDDGSKDVFVHFSAIQNDGYKSLDEGQKVSFTIESGA 59 (70)
T ss_pred EEeCCCCcEEEecCCCCccEEEEEeeccccCCCCCCCCCEEEEEEEECC
Confidence 3456799999974332 222 33443222 23446777776666543
No 218
>PLN02655 ent-kaurene oxidase
Probab=29.44 E-value=1.1e+02 Score=23.59 Aligned_cols=48 Identities=10% Similarity=0.055 Sum_probs=34.1
Q ss_pred hhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCceecCee
Q psy11609 14 KDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCK 67 (83)
Q Consensus 14 ~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~ 67 (83)
...+.+.+++||+|-.+++.. -=.|...+||.++..+.. +...+.+++
T Consensus 22 ~~~~~~~~~~yG~i~~~~~g~-----~~~vvv~~pe~~k~il~~-~~~~f~~r~ 69 (466)
T PLN02655 22 HRTFTKWSEIYGPIYTIRTGA-----SSVVVLNSTEVAKEAMVT-KFSSISTRK 69 (466)
T ss_pred hHHHHHHHHHhCCeEEEEECC-----EeEEEeCCHHHHHHHHHh-cCchhcCCC
Confidence 345888899999987777633 357778899999999864 444444443
No 219
>smart00738 NGN In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. In Spt5p, this domain may confer affinity for Spt4p.Spt4p
Probab=29.39 E-value=74 Score=19.36 Aligned_cols=24 Identities=25% Similarity=0.170 Sum_probs=20.7
Q ss_pred ceEEEEEeCCchHHHHHHhhcCCc
Q psy11609 38 DRYGLVCFKKADDAEKAILGSHEK 61 (83)
Q Consensus 38 ~g~afV~F~~pEdA~~A~~~~ng~ 61 (83)
.||-||.....++...++..+.|.
T Consensus 59 pGYvFv~~~~~~~~~~~i~~~~~v 82 (106)
T smart00738 59 PGYIFVEADLEDEVWTAIRGTPGV 82 (106)
T ss_pred CCEEEEEEEeCCcHHHHHhcCCCc
Confidence 499999999878888999998884
No 220
>PTZ00298 mevalonate kinase; Provisional
Probab=29.17 E-value=1.3e+02 Score=22.54 Aligned_cols=42 Identities=12% Similarity=0.199 Sum_probs=30.4
Q ss_pred HHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcC
Q psy11609 17 LYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSH 59 (83)
Q Consensus 17 L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~n 59 (83)
|.+...+.|-.- +++.+.++.|..|.-+.++++|+++...+.
T Consensus 266 l~~~~~~~Ga~g-aklSGsG~GG~v~al~~~~~~a~~~~~~l~ 307 (328)
T PTZ00298 266 IVQTCRTYGALG-AKMSGTGRGGLVVALAASEDQRDAIAKAVR 307 (328)
T ss_pred HHHHHHhCCCce-eEeccCCCCeEEEEEecchhhHHHHHHHHH
Confidence 555556678544 788888888888888888888876665553
No 221
>PF06491 Disulph_isomer: Disulphide isomerase; InterPro: IPR009474 This entry consists of several hypothetical bacterial proteins of unknown function.; PDB: 3FHK_F.
Probab=29.07 E-value=38 Score=23.54 Aligned_cols=25 Identities=16% Similarity=0.337 Sum_probs=16.6
Q ss_pred eEEEEEeCCchHHHHHHhhcCCcee
Q psy11609 39 RYGLVCFKKADDAEKAILGSHEKHF 63 (83)
Q Consensus 39 g~afV~F~~pEdA~~A~~~~ng~~~ 63 (83)
..||-.+++||+.+.|+....|..|
T Consensus 15 ~~Gf~eL~T~e~Vd~~~~~~~GTtl 39 (136)
T PF06491_consen 15 RAGFEELTTAEEVDEALKNKEGTTL 39 (136)
T ss_dssp TTT-EE--SHHHHHHHHHH--SEEE
T ss_pred HcCccccCCHHHHHHHHhCCCCcEE
Confidence 4578899999999999998888644
No 222
>cd01942 ribokinase_group_A Ribokinase-like subgroup A. Found in bacteria and archaea, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time.
Probab=28.99 E-value=1.3e+02 Score=21.02 Aligned_cols=44 Identities=11% Similarity=0.200 Sum_probs=29.5
Q ss_pred eEeeeecCCcchhhHHHHHhccCC-ceeEEEEeccCCceEEEEEe
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHG-KVSWVKIIGQGGDRYGLVCF 45 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG-~Itsv~V~~d~~~g~afV~F 45 (83)
+-|++.+.+|..-+.+.+++++.| +++-+....+.+.+..++..
T Consensus 53 ~~~~~~vG~D~~g~~i~~~l~~~gi~~~~~~~~~~~~t~~~~~~~ 97 (279)
T cd01942 53 PGLVAAVGEDFHGRLYLEELREEGVDTSHVRVVDEDSTGVAFILT 97 (279)
T ss_pred ceEEEEecCCcchHHHHHHHHHcCCCccceEEcCCCCcceEEEEE
Confidence 357888999999999999999999 34434344333444444443
No 223
>PRK14591 rimM 16S rRNA-processing protein RimM; Provisional
Probab=28.87 E-value=88 Score=21.58 Aligned_cols=39 Identities=15% Similarity=0.120 Sum_probs=27.7
Q ss_pred ceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCCCc-cccC
Q psy11609 38 DRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDVDF-ELEF 82 (83)
Q Consensus 38 ~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~~~-e~e~ 82 (83)
.+..+|.|+.-++-+.| ++ +-|+.|+|...+-|+. |+||
T Consensus 61 ~~~~lv~f~gi~dr~~A-e~-----l~g~~l~v~~~~lp~l~e~E~ 100 (169)
T PRK14591 61 ADKVYIKLANINNADTA-KK-----YVNALIGVPKRALPQLAEDEV 100 (169)
T ss_pred CCEEEEEEcCCCCHHHH-HH-----hcCCEEEEEHHHCCCCCCCCE
Confidence 34579999999988777 33 5567788887776554 3465
No 224
>cd04917 ACT_AKiii-LysC-EC_2 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The second ACT domain (ACT2), this CD, is not involved in the binding of heterotrophic effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=28.73 E-value=58 Score=18.19 Aligned_cols=46 Identities=17% Similarity=0.328 Sum_probs=26.6
Q ss_pred HHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCcee
Q psy11609 17 LYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHF 63 (83)
Q Consensus 17 L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~ 63 (83)
+.+-|+..+.+. +.++-.......+-+.=+.+++++|++.++...|
T Consensus 18 ~~~i~~~L~~i~-i~~i~~~~s~~~is~~V~~~~~~~a~~~Lh~~f~ 63 (64)
T cd04917 18 EKRIFDALEDIN-VRMICYGASNHNLCFLVKEEDKDEVVQRLHSRLF 63 (64)
T ss_pred HHHHHHHHHhCC-eEEEEEecCccEEEEEEeHHHHHHHHHHHHHHHh
Confidence 334444444443 5555554444445445556889999988876544
No 225
>cd04932 ACT_AKiii-LysC-EC_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=28.64 E-value=59 Score=19.46 Aligned_cols=16 Identities=25% Similarity=0.316 Sum_probs=13.0
Q ss_pred hhhHHHHHhccCCcee
Q psy11609 13 LKDGLYHEYKKHGKVS 28 (83)
Q Consensus 13 ~~d~L~~eF~kfG~It 28 (83)
+++.|..++++||+|+
T Consensus 57 ~~~~l~~~l~~~~~v~ 72 (75)
T cd04932 57 LTQALLKELSQICDVK 72 (75)
T ss_pred HHHHHHHHHHhccEEE
Confidence 4567889999999876
No 226
>KOG3980|consensus
Probab=28.54 E-value=1.5e+02 Score=23.73 Aligned_cols=40 Identities=15% Similarity=-0.032 Sum_probs=29.1
Q ss_pred ceEEEEEeCCchHHHH---HHhhcCCceecCeeeEEEecCCCC
Q psy11609 38 DRYGLVCFKKADDAEK---AILGSHEKHFFGCKIDVSPYHDVD 77 (83)
Q Consensus 38 ~g~afV~F~~pEdA~~---A~~~~ng~~~~g~~i~V~~a~g~~ 77 (83)
+|.||++=.+|.-|.+ |...+-++.+-.-.|+++.+.|.+
T Consensus 189 rG~ays~rVsP~~A~rm~d~Ak~~l~~~i~dv~i~~d~~~g~~ 231 (361)
T KOG3980|consen 189 RGVAYSTRVSPSLANRMVDAAKRVLHKFIPDVYIYTDVRKGVD 231 (361)
T ss_pred EeEEEEcccChHHHHHHHHHHHHHHhhhCCceEEEEeeecccc
Confidence 6889999999977733 233334477888999999887755
No 227
>TIGR00387 glcD glycolate oxidase, subunit GlcD. This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity.
Probab=28.52 E-value=1.1e+02 Score=23.84 Aligned_cols=44 Identities=16% Similarity=0.069 Sum_probs=32.9
Q ss_pred HHHHHhc----cCCceeEEEEeccC---CceEEEEEeCCchHHHHHHhhcC
Q psy11609 16 GLYHEYK----KHGKVSWVKIIGQG---GDRYGLVCFKKADDAEKAILGSH 59 (83)
Q Consensus 16 ~L~~eF~----kfG~Itsv~V~~d~---~~g~afV~F~~pEdA~~A~~~~n 59 (83)
+|.+.|- .+|-||++.+--.+ ...+..+.|.+.++|-+|+..+.
T Consensus 148 dl~~l~~Gs~GtlGiit~~~lkl~p~p~~~~~~~~~f~~~~~~~~~~~~~~ 198 (413)
T TIGR00387 148 DLTGLFVGSEGTLGIVTEATLKLLPKPENIVVALAFFDSIEKAMQAVYDII 198 (413)
T ss_pred ChhhhcccCCccceEEEEEEEEeecCCCccEEEEEECCCHHHHHHHHHHHH
Confidence 4666653 48889988776654 35677889999999999986654
No 228
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=28.20 E-value=46 Score=26.04 Aligned_cols=20 Identities=15% Similarity=0.379 Sum_probs=17.2
Q ss_pred HHHHhccCCceeEEEEeccC
Q psy11609 17 LYHEYKKHGKVSWVKIIGQG 36 (83)
Q Consensus 17 L~~eF~kfG~Itsv~V~~d~ 36 (83)
+-..|-+||+|.||+++.+.
T Consensus 32 Fl~~fv~~~pIESiYL~~~~ 51 (309)
T PF10567_consen 32 FLTKFVKFGPIESIYLIKSN 51 (309)
T ss_pred HHHHhhccCceeEEEEecCC
Confidence 44578999999999999866
No 229
>PRK14998 cold shock-like protein CspD; Provisional
Probab=27.21 E-value=39 Score=20.50 Aligned_cols=44 Identities=11% Similarity=0.156 Sum_probs=27.5
Q ss_pred ccCCceEEEEEeCCc-hHH---HHHHhhcC-CceecCeeeEEEecCCCC
Q psy11609 34 GQGGDRYGLVCFKKA-DDA---EKAILGSH-EKHFFGCKIDVSPYHDVD 77 (83)
Q Consensus 34 ~d~~~g~afV~F~~p-EdA---~~A~~~~n-g~~~~g~~i~V~~a~g~~ 77 (83)
-+..+|||||+=.+. +|. -.|++... ...-.|.++..++.+++.
T Consensus 9 fn~~kGfGFI~~~~g~~dVFvH~s~l~~~g~~~l~~G~~V~f~~~~~~~ 57 (73)
T PRK14998 9 FNNAKGFGFICPEGGGEDIFAHYSTIQMDGYRTLKAGQSVRFDVHQGPK 57 (73)
T ss_pred EeCCCceEEEecCCCCccEEEEeeeecccCCCCCCCCCEEEEEEEECCC
Confidence 355899999976543 333 34454322 345578888888777654
No 230
>PRK03892 ribonuclease P protein component 3; Provisional
Probab=27.00 E-value=1.8e+02 Score=21.67 Aligned_cols=44 Identities=23% Similarity=0.155 Sum_probs=32.7
Q ss_pred Eeeeec------CCcchhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhc
Q psy11609 3 LFIYVV------SDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGS 58 (83)
Q Consensus 3 lfv~k~------~d~~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ 58 (83)
+|.-|+ ..+.+++++.+.-+.||.+ .|.|.- ++|.++++++..-
T Consensus 31 ~~~~~~~~~~~~~~~~~~~d~~~l~~~yg~~-gv~i~~-----------~np~~l~~~V~k~ 80 (216)
T PRK03892 31 VFTKKLVLEDSPDFGSLKEELKELKKEYGKV-AILLVT-----------PKPSLIREVKQRF 80 (216)
T ss_pred EEEEEEeccCCCChhhhHHHHHHHHHhcCcc-eEEEec-----------CCHHHHHHHHHhc
Confidence 455566 6778899999999999966 465533 6788888887665
No 231
>PLN00168 Cytochrome P450; Provisional
Probab=26.83 E-value=1.3e+02 Score=23.67 Aligned_cols=48 Identities=13% Similarity=-0.026 Sum_probs=34.8
Q ss_pred hHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCceecCeee
Q psy11609 15 DGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKI 68 (83)
Q Consensus 15 d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i 68 (83)
..+.+.+++||+|-.+++.. .=.|...+||.++.++.. ++..+-++|.
T Consensus 61 ~~~~~~~~~yG~i~~~~~g~-----~~~vvv~dpe~~~~il~~-~~~~f~~rp~ 108 (519)
T PLN00168 61 PLLRRLIARYGPVVSLRVGS-----RLSVFVADRRLAHAALVE-RGAALADRPA 108 (519)
T ss_pred HHHHHHHHHhCCeEEEEcCC-----ccEEEECCHHHHHHHHHh-cCCccccCCc
Confidence 44667789999988777522 457888899999999865 4455555654
No 232
>cd01166 KdgK 2-keto-3-deoxygluconate kinase (KdgK) phosphorylates 2-keto-3-deoxygluconate (KDG) to form 2-keto-3-deoxy-6-phosphogluconate (KDGP). KDG is the common intermediate product, that allows organisms to channel D-glucuronate and/or D-galacturinate into the glycolysis and therefore use polymers, like pectin and xylan as carbon sources.
Probab=26.81 E-value=1.9e+02 Score=20.32 Aligned_cols=43 Identities=14% Similarity=0.176 Sum_probs=28.0
Q ss_pred eEeeeecCCcchhhHHHHHhccCC-ceeEEEEeccCCceEEEEE
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHG-KVSWVKIIGQGGDRYGLVC 44 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG-~Itsv~V~~d~~~g~afV~ 44 (83)
+-|++.+.+|..-+.|.+.++++| ++.-+.+..+.+.+..+|.
T Consensus 48 ~~~i~~vG~D~~g~~i~~~l~~~gi~~~~~~~~~~~~t~~~~~~ 91 (294)
T cd01166 48 VALVTAVGDDPFGRFILAELRREGVDTSHVRVDPGRPTGLYFLE 91 (294)
T ss_pred eEEEEecCCCHHHHHHHHHHHHcCCCCceEEEeCCCcceEEEEE
Confidence 357888888888888999999999 3443434333334444443
No 233
>PF07338 DUF1471: Protein of unknown function (DUF1471); InterPro: IPR010854 This entry consists of several hypothetical Enterobacterial proteins of around 90 residues in length. Some of the proteins are annotated as ydgH precursors and contain two copies of this region, one at the N terminus and the other at the C terminus. The function of this family is unknown.; PDB: 2NOC_A 2JNA_B 4EVU_B.
Probab=26.67 E-value=64 Score=18.57 Aligned_cols=14 Identities=43% Similarity=0.572 Sum_probs=10.7
Q ss_pred EeCCchHHHHHHhh
Q psy11609 44 CFKKADDAEKAILG 57 (83)
Q Consensus 44 ~F~~pEdA~~A~~~ 57 (83)
.+.+|+|+.+++..
T Consensus 13 ~~~s~~d~~~~la~ 26 (56)
T PF07338_consen 13 NFGSPDDAEEALAK 26 (56)
T ss_dssp ECSSHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHH
Confidence 45799999888754
No 234
>KOG0660|consensus
Probab=26.59 E-value=43 Score=26.65 Aligned_cols=60 Identities=13% Similarity=0.108 Sum_probs=39.8
Q ss_pred ccCCceeEEEEeccCCceEEE--EE--eCCchHHHHHHhhcCCceecCeeeEEEecC--CCCccccC
Q psy11609 22 KKHGKVSWVKIIGQGGDRYGL--VC--FKKADDAEKAILGSHEKHFFGCKIDVSPYH--DVDFELEF 82 (83)
Q Consensus 22 ~kfG~Itsv~V~~d~~~g~af--V~--F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~--g~~~e~e~ 82 (83)
.-||-|.|..-..++ +.+|. +. |+++-+|+++++++....-+.-+-.|.+.+ +|+..++|
T Consensus 33 GAyGvVcsA~~~~t~-~~VAIKKi~~~F~~~~~akRtlRElklLr~~~HeNIi~l~di~~p~~~~~f 98 (359)
T KOG0660|consen 33 GAYGVVCSAKDKRTG-EKVAIKKILNPFENQIDAKRTLRELKLLRHLRHENIIGLLDIFRPPSRDKF 98 (359)
T ss_pred cceeeEEEEEEcCCC-CEeehhhhhhhhhchHHHHHHHHHHHHHHHhcCCCcceEEeeccccccccc
Confidence 457877766554443 55554 33 899999999999998876666776666655 44333344
No 235
>PF08383 Maf_N: Maf N-terminal region; InterPro: IPR013592 This region is found in various leucine zipper transcription factors of the Maf family. These are implicated in the regulation of insulin gene expression [], in erythroid differentiation [], and in differentiation of the neuroretina [].
Probab=26.53 E-value=42 Score=18.23 Aligned_cols=10 Identities=30% Similarity=0.584 Sum_probs=8.0
Q ss_pred CchHHHHHHh
Q psy11609 47 KADDAEKAIL 56 (83)
Q Consensus 47 ~pEdA~~A~~ 56 (83)
+||||-+|+-
T Consensus 24 tpEDAvEaLi 33 (35)
T PF08383_consen 24 TPEDAVEALI 33 (35)
T ss_pred CHHHHHHHHh
Confidence 7899988873
No 236
>PLN02971 tryptophan N-hydroxylase
Probab=26.46 E-value=92 Score=24.74 Aligned_cols=47 Identities=11% Similarity=0.055 Sum_probs=34.2
Q ss_pred HHHHHhccCC-ceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCceecCeee
Q psy11609 16 GLYHEYKKHG-KVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKI 68 (83)
Q Consensus 16 ~L~~eF~kfG-~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i 68 (83)
.+.+.+++|| +|..+++.. -=.|...+||.++..+.. ++..+.++|.
T Consensus 83 ~l~~~~~~yg~~i~~~~~G~-----~~~vvv~dpe~ikevl~~-~~~~f~~rp~ 130 (543)
T PLN02971 83 WLHSLMKELNTEIACVRLGN-----THVIPVTCPKIAREIFKQ-QDALFASRPL 130 (543)
T ss_pred HHHHHHHHhCCceEEEEcCC-----cceEEECCHHHHHHHHHh-cchhhcCCCc
Confidence 4667889999 787666421 237888999999999865 5666666664
No 237
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=26.45 E-value=2.7e+02 Score=21.12 Aligned_cols=58 Identities=19% Similarity=0.102 Sum_probs=35.5
Q ss_pred hHHHHHhccCC-ceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCC------ceec-CeeeEEEec
Q psy11609 15 DGLYHEYKKHG-KVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHE------KHFF-GCKIDVSPY 73 (83)
Q Consensus 15 d~L~~eF~kfG-~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng------~~~~-g~~i~V~~a 73 (83)
++|....+++| ++- +|-......|-|-.--++++|..+|+..+.. +++. |+.+.|..+
T Consensus 125 ~~l~~~~~~~g~P~v-lKp~~~g~~g~Gv~~v~~~~el~~a~~~~~~~~~ivEe~I~~~~E~sv~~~ 190 (372)
T PRK06019 125 EDLEAALADLGLPAV-LKTRRGGYDGKGQWVIRSAEDLEAAWALLGSVPCILEEFVPFEREVSVIVA 190 (372)
T ss_pred HHHHHHHHHcCCcEE-EEeCCCCcCCCCeEEECCHHHHHHHHHhcCCCCEEEEecCCCCeEEEEEEE
Confidence 34555555666 555 5544323344455566899999999988742 3444 677776554
No 238
>PF08442 ATP-grasp_2: ATP-grasp domain; InterPro: IPR013650 The ATP-grasp superfamily currently includes 17 groups of enzymes, catalyzing ATP-dependent ligation of a carboxylate containing molecule to an amino or thiol group-containing molecule []. They contribute predominantly to macromolecular synthesis. ATP-hydrolysis is used to activate a substrate. For example, DD-ligase transfers phosphate from ATP to D-alanine on the first step of catalysis. On the second step the resulting acylphosphate is attacked by a second D-alanine to produce a DD dipeptide following phosphate elimination []. The ATP-grasp domain contains three conserved motifs, corresponding to the phosphate binding loop and the Mg(2+) binding site []. The fold is characterised by two alpha-beta subdomains that grasp the ATP molecule between them. Each subdomain provides a variable loop that forms a part of the active site, completed by region of other domains not conserved between the various ATP-grasp enzymes []. The ATP-grasp domain represented by this entry is found primarily in succinyl-CoA synthetases (6.2.1.5 from EC).; PDB: 3PFF_A 3MWD_A 3MWE_A 1CQI_E 1SCU_B 2NU9_G 2NU6_E 1CQJ_E 2NU7_B 1JLL_E ....
Probab=26.00 E-value=99 Score=22.18 Aligned_cols=50 Identities=18% Similarity=0.174 Sum_probs=29.4
Q ss_pred hHHHHHhccCCc---eeEEEEecc-CCceEEEEEeCCchHHHHHHhhcCCceec
Q psy11609 15 DGLYHEYKKHGK---VSWVKIIGQ-GGDRYGLVCFKKADDAEKAILGSHEKHFF 64 (83)
Q Consensus 15 d~L~~eF~kfG~---Itsv~V~~d-~~~g~afV~F~~pEdA~~A~~~~ng~~~~ 64 (83)
+++....++.|. |.+..|.-- +.++=|.-.=.+|++|..+...|-|+.+-
T Consensus 28 eea~~~~~~l~~~~~VvKaQvl~GgRGK~GgVk~~~s~~ea~~~a~~mlg~~l~ 81 (202)
T PF08442_consen 28 EEAREAAKELGGKPLVVKAQVLAGGRGKAGGVKIAKSPEEAKEAAKEMLGKTLK 81 (202)
T ss_dssp HHHHHHHHHHTTSSEEEEE-SSSSTTTTTTCEEEESSHHHHHHHHHTTTTSEEE
T ss_pred HHHHHHHHHhCCCcEEEEEeEeecCcccCCceeecCCHHHHHHHHHHHhCCceE
Confidence 344454555553 333333221 13443333456899999999999999887
No 239
>PRK00521 rbfA ribosome-binding factor A; Validated
Probab=25.99 E-value=1.4e+02 Score=19.48 Aligned_cols=37 Identities=14% Similarity=-0.026 Sum_probs=20.2
Q ss_pred CCceeEEEEeccCCceEEEEEeCC-c---hHHHHHHhhcCC
Q psy11609 24 HGKVSWVKIIGQGGDRYGLVCFKK-A---DDAEKAILGSHE 60 (83)
Q Consensus 24 fG~Itsv~V~~d~~~g~afV~F~~-p---EdA~~A~~~~ng 60 (83)
.-+||.|.|..|-+.-.-||..-. + +++-+|++...|
T Consensus 34 ~vtIt~V~vS~Dl~~AkVyvs~~~~~~~~~~~~~~L~~~~~ 74 (120)
T PRK00521 34 MVTVTDVEVSPDLAHAKVYVTVLGDEEDKEEALAALKKAAG 74 (120)
T ss_pred eeEEEEEEECCCCCEEEEEEEECCCchhHHHHHHHHHHhHH
Confidence 467888888776654444444422 2 344445544444
No 240
>PF13773 DUF4170: Domain of unknown function (DUF4170)
Probab=25.36 E-value=53 Score=20.34 Aligned_cols=26 Identities=12% Similarity=0.063 Sum_probs=22.6
Q ss_pred EeCCchHHHHHHhhcCCceecCeeeE
Q psy11609 44 CFKKADDAEKAILGSHEKHFFGCKID 69 (83)
Q Consensus 44 ~F~~pEdA~~A~~~~ng~~~~g~~i~ 69 (83)
-|.+-++|.+|+++.-++.++.-.++
T Consensus 31 ~fp~y~~A~~aWrakAq~TVDnA~mR 56 (69)
T PF13773_consen 31 IFPDYASAYAAWRAKAQRTVDNAHMR 56 (69)
T ss_pred cCCChHHHHHHHHHHHhCchhcceee
Confidence 58899999999999999999886665
No 241
>PRK09890 cold shock protein CspG; Provisional
Probab=24.93 E-value=81 Score=18.77 Aligned_cols=43 Identities=14% Similarity=0.090 Sum_probs=25.3
Q ss_pred ccCCceEEEEEeCCc-hHH---HHHHhhcCCc-eecCeeeEEEecCCC
Q psy11609 34 GQGGDRYGLVCFKKA-DDA---EKAILGSHEK-HFFGCKIDVSPYHDV 76 (83)
Q Consensus 34 ~d~~~g~afV~F~~p-EdA---~~A~~~~ng~-~~~g~~i~V~~a~g~ 76 (83)
-+..+|||||+=.+- +|. -.|+....-+ .--|..+..+..+++
T Consensus 12 f~~~kGfGFI~~~~g~~dvFvH~s~l~~~~~~~l~~G~~V~f~~~~~~ 59 (70)
T PRK09890 12 FNADKGFGFITPDDGSKDVFVHFTAIQSNEFRTLNENQKVEFSIEQGQ 59 (70)
T ss_pred EECCCCcEEEecCCCCceEEEEEeeeccCCCCCCCCCCEEEEEEEECC
Confidence 355799999975543 233 3444433323 347777777776654
No 242
>PF13065 DUF3928: Protein of unknown function (DUF3928)
Probab=24.59 E-value=79 Score=20.28 Aligned_cols=21 Identities=24% Similarity=0.460 Sum_probs=16.0
Q ss_pred ceEEEEEeCCchHHHHHHhhcC
Q psy11609 38 DRYGLVCFKKADDAEKAILGSH 59 (83)
Q Consensus 38 ~g~afV~F~~pEdA~~A~~~~n 59 (83)
.||.+|.|+|.| .++|.++..
T Consensus 71 grftyvhyrn~e-ie~afeavk 91 (95)
T PF13065_consen 71 GRFTYVHYRNEE-IEKAFEAVK 91 (95)
T ss_pred cceeEEEeccHH-HHHHHHHHh
Confidence 679999999865 677776543
No 243
>KOG4410|consensus
Probab=24.11 E-value=1.9e+02 Score=23.02 Aligned_cols=45 Identities=16% Similarity=0.084 Sum_probs=37.5
Q ss_pred EeeeecCCcchhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCc
Q psy11609 3 LFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKA 48 (83)
Q Consensus 3 lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~p 48 (83)
+++++|+-|..-.+|..+..+-|-+- ..+.-.+..|-+|.+|-+.
T Consensus 333 i~~~nl~rd~rv~dlk~~lr~~~~~p-m~iswkg~~~k~flh~~~~ 377 (396)
T KOG4410|consen 333 IKLTNLSRDIRVKDLKSELRKRECTP-MSISWKGHFGKCFLHFGNR 377 (396)
T ss_pred eeeccCccccchHHHHHHHHhcCCCc-eeEeeecCCcceeEecCCc
Confidence 67889999998899999999988665 6676777899999999653
No 244
>PLN02500 cytochrome P450 90B1
Probab=23.76 E-value=80 Score=24.50 Aligned_cols=43 Identities=12% Similarity=0.134 Sum_probs=30.9
Q ss_pred hHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCcee
Q psy11609 15 DGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHF 63 (83)
Q Consensus 15 d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~ 63 (83)
+-+.+.+++||+|..+++.. .-.|...+||.++.++.. ++..+
T Consensus 66 ~~~~~~~~~yG~v~~~~~g~-----~~~vvv~~p~~~~~vl~~-~~~~f 108 (490)
T PLN02500 66 EFMEQHISRYGKIYRSNLFG-----EPTIVSADAGLNRFILQN-EGRLF 108 (490)
T ss_pred HHHHHHHHHhcccccccccC-----CCeEEecCHHHHHHHHhC-CCCeE
Confidence 34666788999998777532 357888999999999853 44444
No 245
>TIGR00512 salvage_mtnA S-methyl-5-thioribose-1-phosphate isomerase. The delineation of this family was based in part on a discussion and neighbor-joining phylogenetic study, by Kyrpides and Woese, of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. This clade is now recognized to include the methionine salvage pathway enzyme MtnA.
Probab=23.70 E-value=1.6e+02 Score=22.92 Aligned_cols=31 Identities=13% Similarity=0.170 Sum_probs=27.0
Q ss_pred EEEEeccC--CceEEEEEeCCchHHHHHHhhcC
Q psy11609 29 WVKIIGQG--GDRYGLVCFKKADDAEKAILGSH 59 (83)
Q Consensus 29 sv~V~~d~--~~g~afV~F~~pEdA~~A~~~~n 59 (83)
++.+..+. |..+-||..++.+|+-+|++.|.
T Consensus 9 ~l~~ldq~~lP~~~~~~~~~~~~~~~~aI~~m~ 41 (331)
T TIGR00512 9 SLELLDQRLLPHESEYIEVTTVEDVADAIRDMR 41 (331)
T ss_pred EEEEEecCCCCCeeEEEEeCCHHHHHHHHHhCc
Confidence 46777766 78899999999999999999986
No 246
>COG0858 RbfA Ribosome-binding factor A [Translation, ribosomal structure and biogenesis]
Probab=23.61 E-value=1.6e+02 Score=19.45 Aligned_cols=48 Identities=10% Similarity=0.032 Sum_probs=29.0
Q ss_pred cCCceeEEEEeccCCceEEEEEeCC-ch----HHHHHHhhcCC--ceecCeeeEE
Q psy11609 23 KHGKVSWVKIIGQGGDRYGLVCFKK-AD----DAEKAILGSHE--KHFFGCKIDV 70 (83)
Q Consensus 23 kfG~Itsv~V~~d~~~g~afV~F~~-pE----dA~~A~~~~ng--~~~~g~~i~V 70 (83)
+.+.||.|.|.+|-+.--.||++=. .+ ++-+|+++..| +...|+.+.+
T Consensus 32 ~~~~Vt~V~vS~Dl~~A~Vyvt~l~~~~~~~~~~~~~L~~A~g~ir~~l~~~~~l 86 (118)
T COG0858 32 GLVTVTDVEVSKDLSHAKVYVTVLGDEESSKAEILAALNKAKGFIRSELGKRLRL 86 (118)
T ss_pred CceEEEEEEEcCCCceEEEEEEecCCchhhHHHHHHHHHHhHHHHHHHHHHhCCe
Confidence 4566999999888776666666422 22 33456666666 3445555543
No 247
>PF06754 PhnG: Phosphonate metabolism protein PhnG; InterPro: IPR009609 This family consists of several bacterial phosphonate metabolism protein PhnG sequences. In Escherichia coli, the phn operon encodes proteins responsible for the uptake and breakdown of phosphonates. The exact function of PhnG is unknown, however it is thought likely that along with six other proteins PhnG makes up the the C-P (carbon-phosphorus) lyase [].; GO: 0015716 phosphonate transport, 0019634 phosphonate metabolic process
Probab=23.61 E-value=1.5e+02 Score=20.34 Aligned_cols=29 Identities=28% Similarity=0.265 Sum_probs=23.1
Q ss_pred ceeEEEEecc-CCceEEEEEeCCchHHHHH
Q psy11609 26 KVSWVKIIGQ-GGDRYGLVCFKKADDAEKA 54 (83)
Q Consensus 26 ~Itsv~V~~d-~~~g~afV~F~~pEdA~~A 54 (83)
+||.|.|-.. +..|||+|-=++++-|.-|
T Consensus 63 ~VTr~~V~l~~g~~G~~~v~G~d~~~A~~~ 92 (146)
T PF06754_consen 63 TVTRCAVRLEDGTVGYGYVLGRDKRHAELA 92 (146)
T ss_pred EEEEEEEEeCCCCEEEEEEcCCCHHHHHHH
Confidence 4778888666 4799999999999988543
No 248
>cd01941 YeiC_kinase_like YeiC-like sugar kinase. Found in eukaryotes and bacteria, YeiC-like kinase is part of the ribokinase/pfkB sugar kinase superfamily. Its oligomerization state is unknown at this time.
Probab=23.53 E-value=1.9e+02 Score=20.32 Aligned_cols=24 Identities=25% Similarity=0.375 Sum_probs=20.9
Q ss_pred eEeeeecCCcchhhHHHHHhccCC
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHG 25 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG 25 (83)
+.|++++.+|..-+.+.+++++.|
T Consensus 52 ~~~~~~lG~D~~g~~i~~~L~~~g 75 (288)
T cd01941 52 VALLSAVGDDSEGESILEESEKAG 75 (288)
T ss_pred cEEEEEEecCccHHHHHHHHHHcC
Confidence 357889999998888999999998
No 249
>TIGR00405 L26e_arch ribosomal protein L24p/L26e, archaeal. This protein contains a KOW domain, shared by bacterial NusG and the L24p/L26e family of ribosomal proteins. Although called archaeal NusG in several publications, it is the only close homolog of eukaryotic L26e in archaeal genomes, shares an operon with L11 in many genomes, and has been sequenced from purified ribosomes. It is here designated as a ribosomal protein for these reasons.
Probab=23.52 E-value=97 Score=20.46 Aligned_cols=58 Identities=17% Similarity=0.111 Sum_probs=36.2
Q ss_pred EeeeecCCcchhhHHHHHhccCC-ceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCc
Q psy11609 3 LFIYVVSDTSLKDGLYHEYKKHG-KVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEK 61 (83)
Q Consensus 3 lfv~k~~d~~~~d~L~~eF~kfG-~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~ 61 (83)
|++.-.....+.+.|...-++-| +|-++.+.. .-+||-||....+++...++..+.|.
T Consensus 3 v~t~~g~E~~v~~~L~~~~~~~~~~~~~~~vp~-~fpGYvFV~~~~~~~~~~~i~~~~gv 61 (145)
T TIGR00405 3 VKTSVGQEKNVARLMARKARKSGLEVYSILAPE-SLKGYILVEAETKIDMRNPIIGVPHV 61 (145)
T ss_pred EEeeCChHHHHHHHHHHHHhhCCCcEEEEEccC-CCCcEEEEEEECcHHHHHHHhCCCCE
Confidence 33433344455556665443333 122333322 25999999999988899999999884
No 250
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=23.33 E-value=1.2e+02 Score=25.32 Aligned_cols=37 Identities=3% Similarity=-0.044 Sum_probs=31.3
Q ss_pred CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecC
Q psy11609 37 GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYH 74 (83)
Q Consensus 37 ~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~ 74 (83)
-+.|.||.-.... |.+.+++|++..+.|++|.|+.+.
T Consensus 525 ~~~~s~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 561 (629)
T PRK11634 525 FASHSTIELPKGM-PGEVLQHFTRTRILNKPMNMQLLG 561 (629)
T ss_pred eCCceEEEcChhh-HHHHHHHhccccccCCceEEEECC
Confidence 3668899876544 889999999999999999999874
No 251
>PF02017 CIDE-N: CIDE-N domain; InterPro: IPR003508 This domain consists of caspase-activated (CAD) nucleases, which induce DNA fragmentation and chromatin condensation during apoptosis, and the cell death activator proteins CIDE-A and CIDE-B, which are inhibitors of CAD nuclease. The two proteins interact through the region defined by the method signatures.; GO: 0006915 apoptosis, 0005622 intracellular; PDB: 1IBX_A 2EEL_A 1F2R_I 1C9F_A 1D4B_A.
Probab=23.12 E-value=1.9e+02 Score=18.05 Aligned_cols=47 Identities=11% Similarity=0.078 Sum_probs=30.0
Q ss_pred EEEec-cCCceEEEEEeCCchHH-HHHHhhcCCceecCeeeEEEe-cCCCCccc
Q psy11609 30 VKIIG-QGGDRYGLVCFKKADDA-EKAILGSHEKHFFGCKIDVSP-YHDVDFEL 80 (83)
Q Consensus 30 v~V~~-d~~~g~afV~F~~pEdA-~~A~~~~ng~~~~g~~i~V~~-a~g~~~e~ 80 (83)
++|.. +++.++|.++ ++-+|- .+|.+.++=-. .++.+-+ .+|..++|
T Consensus 5 ~kv~~~~r~~k~Gv~A-~sL~eL~~K~~~~l~~~~---~~~~lvL~eDGT~Vdd 54 (78)
T PF02017_consen 5 FKVRNHDRSVKKGVAA-SSLEELLEKACDKLQLPE---EPVRLVLEEDGTEVDD 54 (78)
T ss_dssp EEEEETTSSCEEEEEE-SSHHHHHHHHHHHHT-SS---STCEEEETTTTCBESS
T ss_pred EEEecCCCCceEeEEc-CCHHHHHHHHHHHhCCCC---cCcEEEEeCCCcEEcc
Confidence 44544 3478999999 666666 66666554222 4555555 46999987
No 252
>TIGR00264 alpha-NAC-related protein. This hypothetical protein is found so far only in the Archaea. Its C-terminal domain of about 40 amino acids is homologous to the C-termini of the nascent polypeptide-associated complex alpha chain (alpha-NAC) and its yeast ortholog Egd2p and to the huntingtin-interacting protein HYPK. It shows weaker similarity, possibly through shared structural constraints rather than through homology, with the amino-terminal domain of elongation factor Ts. Alpha-NAC plays a role in preventing nascent polypeptides from binding inappropriately to membrane-targeting apparatus during translation, but is also active as a transcription regulator.
Probab=23.07 E-value=60 Score=21.92 Aligned_cols=16 Identities=13% Similarity=0.183 Sum_probs=12.4
Q ss_pred CchHHHHHHhhcCCce
Q psy11609 47 KADDAEKAILGSHEKH 62 (83)
Q Consensus 47 ~pEdA~~A~~~~ng~~ 62 (83)
+.++|.+|+.+.||-+
T Consensus 92 s~e~A~~AL~~~~gDl 107 (116)
T TIGR00264 92 SKEEARRALEECGGDL 107 (116)
T ss_pred CHHHHHHHHHHcCCCH
Confidence 4578899999988853
No 253
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=22.71 E-value=78 Score=18.63 Aligned_cols=25 Identities=28% Similarity=0.298 Sum_probs=19.2
Q ss_pred eEEEEEeCCchHHHHHHhhcCCcee
Q psy11609 39 RYGLVCFKKADDAEKAILGSHEKHF 63 (83)
Q Consensus 39 g~afV~F~~pEdA~~A~~~~ng~~~ 63 (83)
.+.+|.|.+.-+|-+|-+.++..-+
T Consensus 2 ~~~~i~F~st~~a~~~ek~lk~~gi 26 (73)
T PF11823_consen 2 KYYLITFPSTHDAMKAEKLLKKNGI 26 (73)
T ss_pred ceEEEEECCHHHHHHHHHHHHHCCC
Confidence 3689999999999888776665433
No 254
>KOG2318|consensus
Probab=22.49 E-value=1.3e+02 Score=25.71 Aligned_cols=34 Identities=12% Similarity=0.084 Sum_probs=29.3
Q ss_pred EEEEEeCCchHHHHHHhhcCCceecCeeeEEEec
Q psy11609 40 YGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPY 73 (83)
Q Consensus 40 ~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a 73 (83)
||.|.|.+++.|..-+.+..|..|-..-..+.+-
T Consensus 270 yAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLR 303 (650)
T KOG2318|consen 270 YAVVECDSIETAKAVYEECDGIEFESSANKLDLR 303 (650)
T ss_pred EEEEEecCchHHHHHHHhcCcceeccccceeeee
Confidence 8999999999999999999999887666665553
No 255
>PF11181 YflT: Heat induced stress protein YflT
Probab=22.42 E-value=66 Score=20.24 Aligned_cols=34 Identities=15% Similarity=0.083 Sum_probs=28.0
Q ss_pred EEeCCchHHHHHHhhcCCceecCeeeEEEecCCC
Q psy11609 43 VCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDV 76 (83)
Q Consensus 43 V~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~ 76 (83)
-.|.+.++|..|++.+..+=+....|+|-..+.-
T Consensus 4 gv~~~~~E~~~~I~~L~~~Gy~~ddI~Vva~d~~ 37 (103)
T PF11181_consen 4 GVYDNEEEALSAIEELKAQGYSEDDIYVVAKDKD 37 (103)
T ss_pred EEECCHHHHHHHHHHHHHcCCCcccEEEEEcCch
Confidence 3689999999999999988888888888765543
No 256
>COG0806 RimM RimM protein, required for 16S rRNA processing [Translation, ribosomal structure and biogenesis]
Probab=22.21 E-value=1.8e+02 Score=20.55 Aligned_cols=40 Identities=28% Similarity=0.247 Sum_probs=31.7
Q ss_pred CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCCCc-cccC
Q psy11609 37 GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDVDF-ELEF 82 (83)
Q Consensus 37 ~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~~~-e~e~ 82 (83)
.+..-+|.|+.-.+-+.|- .+.|+.|.|..++-|+. |+||
T Consensus 61 ~~~~~i~kf~gi~dr~~ae------~l~G~~i~v~~~~~p~l~EdEf 101 (174)
T COG0806 61 HKNLLILKFKGIDDRNAAE------ALKGYEIFVDRSELPELEEDEF 101 (174)
T ss_pred cCCEEEEEeCCCCCHHHHH------HhcCcEEEEEHHHCCCCCCCcE
Confidence 5778999999999887773 35678889999987775 5587
No 257
>PF01709 Transcrip_reg: Transcriptional regulator; InterPro: IPR002876 This entry represents the core region of several hypothetical proteins found in bacteria, plants, and yeast proteins. This core region can be subdivided into three domains: a 3-helical bundle domain, and two alpha+beta domains with different folds, where domain 3 (ferredoxin-like fold) is inserted within domain 2. This core region is found in the following hypothetical proteins: YebC from Escherichia coli, HP0162 from Helicobacter pylori (Campylobacter pylori) and aq1575 from Aquifex aeolicus []. The crystal structure of a conserved hypothetical protein, Aq1575, from Aquifex aeolicus has been determined. A structural homology search reveals that this protein has a new fold with no obvious similarity to those of other proteins of known three-dimensional structure. The protein reveals a monomer consisting of three domains arranged along a pseudo threefold symmetry axis. There is a large cleft with approximate dimensions of 10 A x 10 A x 20 A in the centre of the three domains along the symmetry axis. Two possible active sites are suggested based on the structure and multiple sequence alignment. There are several highly conserved residues in these putative active sites [].; PDB: 1LFP_A 1MW7_A 1KON_A.
Probab=22.08 E-value=2.9e+02 Score=20.23 Aligned_cols=45 Identities=20% Similarity=0.331 Sum_probs=25.5
Q ss_pred eeecCCcch--hhHHHHHhccCCceeEEEEeccCC-----ceEEEEEeC-CchHHHH
Q psy11609 5 IYVVSDTSL--KDGLYHEYKKHGKVSWVKIIGQGG-----DRYGLVCFK-KADDAEK 53 (83)
Q Consensus 5 v~k~~d~~~--~d~L~~eF~kfG~Itsv~V~~d~~-----~g~afV~F~-~pEdA~~ 53 (83)
|--++|... ..+|++.|+|+| ..+...++ ++.|+|.+. ...+.+.
T Consensus 95 ve~lTDN~nRt~~~ir~~~~K~g----g~l~~~gsv~~~F~~kG~i~~~~~~~~~d~ 147 (234)
T PF01709_consen 95 VECLTDNKNRTVSDIRSIFKKNG----GSLGPSGSVSFMFERKGVIEVSKKDLDEDE 147 (234)
T ss_dssp EEEEES-HHHHHHHHHHHHHTTT-----EEE-TTSSGGGEEEEEEEEEEHCCS-HHH
T ss_pred EEEeCCCHhHHHHHHHHHHHHcC----ceeCCCCcceeeeeeeEEEEEEeCCCChHH
Confidence 333444433 345999999997 44545443 778888887 4443433
No 258
>PRK14046 malate--CoA ligase subunit beta; Provisional
Probab=21.97 E-value=2.5e+02 Score=22.02 Aligned_cols=25 Identities=12% Similarity=0.112 Sum_probs=20.5
Q ss_pred CceEEEEEeCCchHHHHHHhhcCCcee
Q psy11609 37 GDRYGLVCFKKADDAEKAILGSHEKHF 63 (83)
Q Consensus 37 ~~g~afV~F~~pEdA~~A~~~~ng~~~ 63 (83)
..|+.+. .+++++..|.+.|-++.+
T Consensus 57 ~GGV~l~--~~~~e~~~a~~~ll~~~~ 81 (392)
T PRK14046 57 AGGIKLC--RTYNEVRDAAEDLLGKKL 81 (392)
T ss_pred CCeEEEE--CCHHHHHHHHHHHhcchh
Confidence 3667776 599999999999988865
No 259
>PRK13818 ribosome-binding factor A; Provisional
Probab=21.81 E-value=1.8e+02 Score=19.17 Aligned_cols=38 Identities=3% Similarity=-0.045 Sum_probs=23.9
Q ss_pred cCCceeEEEEeccCCceEEEEEeCC--ch---HHHHHHhhcCC
Q psy11609 23 KHGKVSWVKIIGQGGDRYGLVCFKK--AD---DAEKAILGSHE 60 (83)
Q Consensus 23 kfG~Itsv~V~~d~~~g~afV~F~~--pE---dA~~A~~~~ng 60 (83)
++-+||.|.|..|-+.--.||++-. ++ ++.++++.+.|
T Consensus 30 ~~vtVt~V~lS~Dl~~AkVyvs~~~~~~~~~~~~~~~L~~a~g 72 (121)
T PRK13818 30 SDVTITAVECTNDLSYATVYYSLLTEDEAKEKEVQEGLEKAKG 72 (121)
T ss_pred CceEEeEEEECCCCCEEEEEEEeCCCchhHHHHHHHHHHHhHH
Confidence 3678999999888765555555542 22 23455666555
No 260
>PF05036 SPOR: Sporulation related domain; InterPro: IPR007730 This 70 residue domain is composed of two 35 residue repeats that are found in bacterial proteins involved in sporulation and cell division, such as FtsN, CwlM and RlpA. This repeat might be involved in binding peptidoglycan. FtsN is an essential cell division protein with a simple bitopic topology: a short N-terminal cytoplasmic segment fused to a large carboxy periplasmic domain through a single transmembrane domain. The repeats lie at the periplasmic C terminus, which has an RNP-like fold []. FtsN localises to the septum ring complex. The CwlM protein is a cell wall hydrolase, where the C-terminal region, including the repeats, determines substrate specificity []. RlpA is a rare lipoprotein A protein that may be important for cell division. Its N-terminal cysteine may be attached to thioglyceride and N-fatty acyl residues [].; PDB: 1X60_A 1UTA_A.
Probab=21.74 E-value=1.6e+02 Score=16.28 Aligned_cols=22 Identities=23% Similarity=0.202 Sum_probs=17.8
Q ss_pred ceEEEEEeCCchHHHHHHhhcC
Q psy11609 38 DRYGLVCFKKADDAEKAILGSH 59 (83)
Q Consensus 38 ~g~afV~F~~pEdA~~A~~~~n 59 (83)
-++-.--|.+.++|++++..+.
T Consensus 44 yrV~~G~f~~~~~A~~~~~~l~ 65 (76)
T PF05036_consen 44 YRVRVGPFSSREEAEAALRKLK 65 (76)
T ss_dssp EEEEECCECTCCHHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHHHh
Confidence 4556667999999999998876
No 261
>PLN03141 3-epi-6-deoxocathasterone 23-monooxygenase; Provisional
Probab=21.62 E-value=83 Score=24.12 Aligned_cols=41 Identities=17% Similarity=0.156 Sum_probs=30.1
Q ss_pred HHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCcee
Q psy11609 17 LYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHF 63 (83)
Q Consensus 17 L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~ 63 (83)
+...+++||+|-.+++.. .-+|...+||.++..+.. ++..+
T Consensus 37 ~~~~~~~yG~i~~~~lg~-----~~~vvv~~p~~~~~vl~~-~~~~~ 77 (452)
T PLN03141 37 MDKRRSLYGKVFKSHIFG-----TPTIVSTDAEVNKVVLQS-DGNAF 77 (452)
T ss_pred HHHHHHHhhheeeeccCC-----CCEEEEeCHHHhhHHHhC-CCCee
Confidence 667889999999887743 467778899999888754 44433
No 262
>PF08796 DUF1797: Protein of unknown function (DUF1797); InterPro: IPR014904 The function of this protein is unknown. It forms a central anti-parallel beta sheet with flanking alpha helical regions. ; PDB: 2FFG_B.
Probab=21.56 E-value=1.4e+02 Score=18.26 Aligned_cols=30 Identities=10% Similarity=0.268 Sum_probs=22.0
Q ss_pred HHHhccCCceeEEEEeccC-CceEEEEEeCCc
Q psy11609 18 YHEYKKHGKVSWVKIIGQG-GDRYGLVCFKKA 48 (83)
Q Consensus 18 ~~eF~kfG~Itsv~V~~d~-~~g~afV~F~~p 48 (83)
.+.|+++|... |.|..++ ++-|.+-.++.-
T Consensus 18 ~R~FE~~G~~~-c~V~y~~~t~~F~l~~~~~~ 48 (67)
T PF08796_consen 18 VRRFEKEGVEV-CTVTYDQETETFELEEYRQK 48 (67)
T ss_dssp EEEEEETTEEE-EEEEEETTTTEEEEEEEETT
T ss_pred EEEeecCCEEE-EEEEEECCCCeEEEEEecCC
Confidence 34799999665 9999988 455777766543
No 263
>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa
Probab=21.55 E-value=1.1e+02 Score=16.49 Aligned_cols=44 Identities=27% Similarity=0.386 Sum_probs=24.2
Q ss_pred hhHHHHHhccCCceeEEEEecc--CCceEEEEEeCCchHHHHHHhhcCCc
Q psy11609 14 KDGLYHEYKKHGKVSWVKIIGQ--GGDRYGLVCFKKADDAEKAILGSHEK 61 (83)
Q Consensus 14 ~d~L~~eF~kfG~Itsv~V~~d--~~~g~afV~F~~pEdA~~A~~~~ng~ 61 (83)
-..++..+++.| |. +..+-. .+..+.|+.-+ +++.+|++.++..
T Consensus 18 ~~~i~~~l~~~~-I~-v~~i~~~~s~~~is~~v~~--~~~~~~~~~lh~~ 63 (66)
T cd04922 18 AATFFSALAKAN-VN-IRAIAQGSSERNISAVIDE--DDATKALRAVHER 63 (66)
T ss_pred HHHHHHHHHHCC-CC-EEEEEecCcccEEEEEEeH--HHHHHHHHHHHHH
Confidence 334777778887 44 433332 23445555443 5667777766544
No 264
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=21.40 E-value=39 Score=25.88 Aligned_cols=18 Identities=28% Similarity=0.346 Sum_probs=14.2
Q ss_pred chhhHHHHHhccCCceeE
Q psy11609 12 SLKDGLYHEYKKHGKVSW 29 (83)
Q Consensus 12 ~~~d~L~~eF~kfG~Its 29 (83)
+....|...|.|||+|++
T Consensus 97 S~~silq~If~KHGDIAs 114 (269)
T PF05278_consen 97 SQVSILQKIFEKHGDIAS 114 (269)
T ss_pred hHHHHHHHHHHhCccHhh
Confidence 344558999999999983
No 265
>PRK10905 cell division protein DamX; Validated
Probab=21.38 E-value=3.2e+02 Score=21.60 Aligned_cols=58 Identities=21% Similarity=0.231 Sum_probs=37.8
Q ss_pred eeeecCCcchhhHHHHHhccCCceeEEEEec---cCCceEEEE--EeCCchHHHHHHhhcCCce
Q psy11609 4 FIYVVSDTSLKDGLYHEYKKHGKVSWVKIIG---QGGDRYGLV--CFKKADDAEKAILGSHEKH 62 (83)
Q Consensus 4 fv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~---d~~~g~afV--~F~~pEdA~~A~~~~ng~~ 62 (83)
|+..++.-+-.+.|...=+|+| +..-.|.. ++..||-.+ .|.+.++|++|+..+....
T Consensus 248 YTLQL~A~Ss~~~l~~fakKlg-L~~y~vy~TtRnGkpWYVV~yG~YaSraeAk~AiakLPa~v 310 (328)
T PRK10905 248 YTLQLSSSSNYDNLNGWAKKEN-LKNYVVYETTRNGQPWYVLVSGVYASKEEAKRAVSTLPADV 310 (328)
T ss_pred eEEEEEecCCHHHHHHHHHHcC-CCceEEEEeccCCceEEEEEecCCCCHHHHHHHHHHCCHHH
Confidence 5556666666667776666665 34333333 234577665 5999999999999886543
No 266
>COG1308 EGD2 Transcription factor homologous to NACalpha-BTF3 [Transcription]
Probab=21.22 E-value=67 Score=21.90 Aligned_cols=16 Identities=19% Similarity=0.146 Sum_probs=12.5
Q ss_pred CchHHHHHHhhcCCce
Q psy11609 47 KADDAEKAILGSHEKH 62 (83)
Q Consensus 47 ~pEdA~~A~~~~ng~~ 62 (83)
+.|+|.+|+.+.+|-+
T Consensus 98 sreeA~kAL~e~~GDl 113 (122)
T COG1308 98 SREEAIKALEEAGGDL 113 (122)
T ss_pred CHHHHHHHHHHcCCcH
Confidence 4578999999988843
No 267
>PRK06369 nac nascent polypeptide-associated complex protein; Reviewed
Probab=21.18 E-value=69 Score=21.52 Aligned_cols=16 Identities=19% Similarity=0.277 Sum_probs=12.1
Q ss_pred CchHHHHHHhhcCCce
Q psy11609 47 KADDAEKAILGSHEKH 62 (83)
Q Consensus 47 ~pEdA~~A~~~~ng~~ 62 (83)
+.++|.+|+.+.||-+
T Consensus 90 s~~~A~~AL~~~~gDl 105 (115)
T PRK06369 90 SEEEARKALEEANGDL 105 (115)
T ss_pred CHHHHHHHHHHcCCcH
Confidence 4577889998888843
No 268
>COG0150 PurM Phosphoribosylaminoimidazole (AIR) synthetase [Nucleotide transport and metabolism]
Probab=21.11 E-value=26 Score=27.77 Aligned_cols=47 Identities=23% Similarity=0.251 Sum_probs=38.3
Q ss_pred hHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCc
Q psy11609 15 DGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEK 61 (83)
Q Consensus 15 d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~ 61 (83)
..+|+...+.|.|..=...+.-+=|.|||-.-.+|+++++++.+++.
T Consensus 276 p~iF~~i~~~G~v~~~EM~rtFNmGvG~v~iv~~e~~~~~~~~l~~~ 322 (345)
T COG0150 276 PPIFKWLQKAGNVEREEMYRTFNMGVGMVLIVPEEDAEKALALLKEQ 322 (345)
T ss_pred cHHHHHHHHhcCCCHHHHHHHhcCccceEEEEcHHHHHHHHHHHHhc
Confidence 45788888999887444444457899999999999999999999875
No 269
>KOG4676|consensus
Probab=20.11 E-value=22 Score=29.09 Aligned_cols=62 Identities=11% Similarity=0.175 Sum_probs=45.4
Q ss_pred eEeeeecCCcchhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCceec
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFF 64 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~ 64 (83)
|++|..+..+.+.+++-+.|.++|.|.-..+.--...-+.-|.|+..-....|++. +|..+.
T Consensus 153 t~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~ask~~s~~c~~sf~~qts~~halr~-~gre~k 214 (479)
T KOG4676|consen 153 TREVQSLISAAILPESGESFERKGEVSYAHTASKSRSSSCSHSFRKQTSSKHALRS-HGRERK 214 (479)
T ss_pred hhhhhcchhhhcchhhhhhhhhcchhhhhhhhccCCCcchhhhHhhhhhHHHHHHh-cchhhh
Confidence 67888888899999999999999998733322211344677999998888889855 555543
No 270
>PLN02323 probable fructokinase
Probab=20.09 E-value=2.1e+02 Score=20.88 Aligned_cols=25 Identities=32% Similarity=0.317 Sum_probs=21.5
Q ss_pred eEeeeecCCcchhhHHHHHhccCCc
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGK 26 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~ 26 (83)
+.+++...+|..-+.+.+++++.|-
T Consensus 60 ~~~i~~vG~D~~g~~i~~~L~~~GI 84 (330)
T PLN02323 60 SAFIGKVGDDEFGHMLADILKKNGV 84 (330)
T ss_pred eeEEEEecCChhHHHHHHHHHHcCC
Confidence 4678899999999999999999983
Done!