Query psy11609
Match_columns 83
No_of_seqs 115 out of 146
Neff 5.4
Searched_HMMs 29240
Date Fri Aug 16 23:01:26 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11609.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11609hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fxv_A ELAV-like protein 1; RN 99.9 7E-23 2.4E-27 129.2 8.8 73 2-74 21-97 (99)
2 3s8s_A Histone-lysine N-methyl 99.9 1.5E-22 5.1E-27 130.2 9.1 74 2-75 8-85 (110)
3 4f25_A Polyadenylate-binding p 99.9 1.9E-22 6.4E-27 129.3 9.3 74 2-75 7-82 (115)
4 3md1_A Nuclear and cytoplasmic 99.9 4.3E-22 1.5E-26 119.2 9.1 76 1-76 2-81 (83)
5 4a8x_A RNA-binding protein wit 99.9 1.2E-21 4.2E-26 118.0 8.1 75 2-76 6-85 (88)
6 2lkz_A RNA-binding protein 5; 99.9 4.6E-22 1.6E-26 125.8 6.5 73 2-74 11-93 (95)
7 3p5t_L Cleavage and polyadenyl 99.9 2.1E-22 7.2E-27 123.6 4.3 77 1-77 2-84 (90)
8 3bs9_A Nucleolysin TIA-1 isofo 99.9 2.8E-21 9.7E-26 116.5 8.6 75 2-76 8-86 (87)
9 3mdf_A Peptidyl-prolyl CIS-tra 99.9 2.1E-21 7.3E-26 116.6 7.9 73 2-74 9-85 (85)
10 3ns6_A Eukaryotic translation 99.9 9.8E-22 3.3E-26 123.3 6.6 73 2-74 8-91 (100)
11 2lxi_A RNA-binding protein 10; 99.9 5.9E-22 2E-26 122.9 5.2 75 2-76 3-83 (91)
12 2cpi_A CCR4-NOT transcription 99.8 5.9E-21 2E-25 121.4 9.4 76 2-77 17-102 (111)
13 2jvr_A Nucleolar protein 3; RN 99.8 2.1E-21 7.2E-26 126.2 7.4 76 2-77 30-106 (111)
14 2dgx_A KIAA0430 protein; RRM d 99.8 5.4E-21 1.9E-25 118.7 8.8 75 2-76 11-90 (96)
15 2cqi_A Nucleolysin TIAR; RNA r 99.8 7E-21 2.4E-25 118.6 9.3 77 2-78 17-95 (103)
16 1whw_A Hypothetical protein ri 99.8 7.2E-21 2.4E-25 117.5 9.0 76 2-77 10-89 (99)
17 2cq3_A RNA-binding protein 9; 99.8 1.7E-20 5.7E-25 116.8 10.3 76 2-77 17-94 (103)
18 2pe8_A Splicing factor 45; RRM 99.8 9E-21 3.1E-25 121.7 9.3 74 2-75 10-93 (105)
19 2e5h_A Zinc finger CCHC-type a 99.8 1E-20 3.4E-25 115.7 9.0 73 2-74 18-94 (94)
20 2ywk_A Putative RNA-binding pr 99.8 9.1E-21 3.1E-25 116.1 8.7 73 2-74 18-93 (95)
21 2x1f_A MRNA 3'-END-processing 99.8 8.9E-21 3E-25 117.0 8.7 76 2-77 4-83 (96)
22 3ucg_A Polyadenylate-binding p 99.8 1.8E-20 6.3E-25 113.3 9.8 73 2-75 8-84 (89)
23 2nlw_A Eukaryotic translation 99.8 8.5E-21 2.9E-25 119.6 8.6 75 2-76 17-100 (105)
24 2dnz_A Probable RNA-binding pr 99.8 1.2E-20 4.2E-25 115.5 9.0 75 2-76 7-85 (95)
25 2cq0_A Eukaryotic translation 99.8 1.2E-20 4.2E-25 117.4 9.0 76 2-77 17-96 (103)
26 1x5t_A Splicing factor 3B subu 99.8 7.1E-21 2.4E-25 116.7 7.7 76 2-77 7-87 (96)
27 2cqc_A Arginine/serine-rich sp 99.8 1.2E-20 4.2E-25 115.2 8.7 73 2-74 17-93 (95)
28 2hvz_A Splicing factor, argini 99.8 3.1E-21 1.1E-25 119.8 6.1 76 1-77 1-76 (101)
29 2krb_A Eukaryotic translation 99.8 4.1E-21 1.4E-25 115.6 6.2 69 2-70 3-80 (81)
30 2d9p_A Polyadenylate-binding p 99.8 1.1E-20 3.8E-25 117.6 8.3 76 2-77 17-94 (103)
31 1sjq_A Polypyrimidine tract-bi 99.8 4.9E-21 1.7E-25 124.5 6.9 75 1-77 17-93 (105)
32 2cpf_A RNA binding motif prote 99.8 2.2E-20 7.5E-25 115.1 9.4 76 2-77 7-89 (98)
33 2do4_A Squamous cell carcinoma 99.8 1.9E-20 6.5E-25 116.0 9.1 76 2-77 19-97 (100)
34 2wbr_A GW182, gawky, LD47780P; 99.8 8.4E-21 2.9E-25 121.4 7.6 70 2-73 9-78 (89)
35 1x4a_A Splicing factor, argini 99.8 1.8E-20 6.3E-25 117.9 9.0 75 2-76 24-99 (109)
36 2dgo_A Cytotoxic granule-assoc 99.8 2.4E-20 8.3E-25 118.0 9.4 75 2-76 17-95 (115)
37 2cqb_A Peptidyl-prolyl CIS-tra 99.8 1.1E-20 3.8E-25 117.2 7.7 76 2-77 14-93 (102)
38 2err_A Ataxin-2-binding protei 99.8 1.6E-20 5.4E-25 119.3 8.4 75 2-76 31-107 (109)
39 2la6_A RNA-binding protein FUS 99.8 1.4E-20 4.8E-25 116.7 7.9 73 2-74 15-99 (99)
40 1x5u_A Splicing factor 3B subu 99.8 1.4E-20 4.9E-25 117.2 7.9 77 2-78 17-97 (105)
41 1s79_A Lupus LA protein; RRM, 99.8 8.4E-21 2.9E-25 120.9 7.0 72 2-74 13-87 (103)
42 1x5s_A Cold-inducible RNA-bind 99.8 8.7E-21 3E-25 117.7 6.6 76 2-77 14-93 (102)
43 2dgv_A HnRNP M, heterogeneous 99.8 1.8E-20 6.3E-25 114.1 7.9 77 2-78 10-88 (92)
44 1x4c_A Splicing factor, argini 99.8 4.2E-20 1.4E-24 116.7 9.9 74 1-77 16-94 (108)
45 2dgs_A DAZ-associated protein 99.8 3.6E-20 1.2E-24 114.6 9.3 75 2-77 12-90 (99)
46 3ulh_A THO complex subunit 4; 99.8 2.7E-20 9.1E-25 116.3 8.7 73 2-74 31-106 (107)
47 2cpz_A CUG triplet repeat RNA- 99.8 2.2E-20 7.4E-25 118.5 8.4 76 2-77 27-106 (115)
48 2khc_A Testis-specific RNP-typ 99.8 2.7E-20 9.3E-25 118.3 8.9 73 2-74 42-118 (118)
49 2dnh_A Bruno-like 5, RNA bindi 99.8 2.5E-20 8.4E-25 116.2 8.4 76 2-77 17-98 (105)
50 2cqp_A RNA-binding protein 12; 99.8 1.1E-20 3.7E-25 116.5 6.7 76 2-77 17-96 (98)
51 2fy1_A RNA-binding motif prote 99.8 2.9E-20 9.9E-25 119.6 9.0 77 2-78 9-88 (116)
52 2dnm_A SRP46 splicing factor; 99.8 1.7E-20 5.9E-25 116.8 7.6 75 2-76 15-93 (103)
53 1p1t_A Cleavage stimulation fa 99.8 1.8E-20 6.1E-25 116.4 7.7 76 2-77 10-89 (104)
54 2e5j_A Methenyltetrahydrofolat 99.8 1.2E-20 4E-25 116.9 6.5 75 1-76 20-94 (97)
55 3lqv_A PRE-mRNA branch site pr 99.8 2.5E-20 8.6E-25 118.0 8.1 74 2-75 10-84 (115)
56 1p27_B RNA-binding protein 8A; 99.8 3.2E-20 1.1E-24 115.8 8.2 74 2-75 25-102 (106)
57 1x4d_A Matrin 3; structural ge 99.8 1.3E-20 4.5E-25 121.1 6.7 74 1-76 16-92 (102)
58 2cq1_A PTB-like protein L; RRM 99.8 5.7E-20 1.9E-24 117.4 9.3 74 2-77 17-92 (101)
59 2i2y_A Fusion protein consists 99.8 1.9E-20 6.5E-25 123.7 7.3 75 2-77 75-149 (150)
60 2do0_A HnRNP M, heterogeneous 99.8 8.2E-20 2.8E-24 115.2 9.8 74 2-75 17-93 (114)
61 2cph_A RNA binding motif prote 99.8 3.9E-20 1.3E-24 115.3 8.3 76 2-77 17-98 (107)
62 2a3j_A U1 small nuclear ribonu 99.8 2.2E-20 7.6E-25 123.6 7.5 76 2-77 31-111 (127)
63 1oo0_B CG8781-PA, drosophila Y 99.8 3.3E-20 1.1E-24 116.6 7.8 74 2-75 28-105 (110)
64 3r27_A HnRNP L, heterogeneous 99.8 3.6E-20 1.2E-24 119.6 8.1 74 2-77 23-98 (100)
65 1uaw_A Mouse-musashi-1; RNP-ty 99.8 2.3E-20 7.8E-25 110.2 6.5 72 2-74 2-77 (77)
66 1why_A Hypothetical protein ri 99.8 4.6E-20 1.6E-24 114.0 8.2 74 2-77 19-94 (97)
67 2cpj_A Non-POU domain-containi 99.8 5.7E-20 2E-24 113.9 8.5 74 2-77 17-90 (99)
68 2jrs_A RNA-binding protein 39; 99.8 4.8E-20 1.6E-24 117.3 8.3 75 2-76 28-106 (108)
69 2div_A TRNA selenocysteine ass 99.8 3.8E-20 1.3E-24 114.2 7.6 75 2-76 11-94 (99)
70 2cq2_A Hypothetical protein LO 99.8 1.8E-20 6.1E-25 123.5 6.4 74 2-77 27-107 (114)
71 2ytc_A PRE-mRNA-splicing facto 99.8 7.3E-20 2.5E-24 110.1 8.5 71 2-74 14-85 (85)
72 1nu4_A U1A RNA binding domain; 99.8 2.7E-20 9.2E-25 114.3 6.8 75 2-76 10-89 (97)
73 2dnq_A RNA-binding protein 4B; 99.8 7.5E-20 2.6E-24 111.7 8.7 72 2-77 10-81 (90)
74 1x4h_A RNA-binding protein 28; 99.8 5E-20 1.7E-24 115.5 8.1 75 2-76 17-101 (111)
75 2dgp_A Bruno-like 4, RNA bindi 99.8 2.6E-20 9E-25 116.2 6.8 76 2-77 15-97 (106)
76 2ek1_A RNA-binding protein 12; 99.8 2.1E-20 7.2E-25 114.4 6.2 73 2-74 17-93 (95)
77 1whx_A Hypothetical protein ri 99.8 2.4E-20 8.3E-25 119.2 6.7 72 2-75 12-83 (111)
78 2mss_A Protein (musashi1); RNA 99.8 2.1E-20 7.2E-25 110.4 5.8 71 2-73 1-75 (75)
79 2xnq_A Nuclear polyadenylated 99.8 1E-19 3.5E-24 113.6 9.3 71 2-76 24-95 (97)
80 2ki2_A SS-DNA binding protein 99.8 1.7E-20 5.7E-25 114.2 5.4 75 2-77 3-81 (90)
81 3n9u_C Cleavage and polyadenyl 99.8 6.1E-20 2.1E-24 124.4 8.7 74 2-75 57-136 (156)
82 3s7r_A Heterogeneous nuclear r 99.8 1.8E-19 6E-24 109.0 9.8 71 2-73 13-87 (87)
83 2cq4_A RNA binding motif prote 99.8 8.6E-20 2.9E-24 115.6 8.8 72 2-74 27-102 (114)
84 2jwn_A Embryonic polyadenylate 99.8 1.4E-19 4.7E-24 115.9 9.8 73 2-75 38-114 (124)
85 2ad9_A Polypyrimidine tract-bi 99.8 4.5E-20 1.6E-24 121.9 7.7 74 2-77 33-108 (119)
86 2dng_A Eukaryotic translation 99.8 1.3E-19 4.5E-24 113.0 9.4 74 2-77 17-94 (103)
87 1x4g_A Nucleolysin TIAR; struc 99.8 7.2E-20 2.5E-24 115.4 8.2 74 1-76 26-99 (109)
88 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.8 6.7E-20 2.3E-24 118.4 8.1 72 2-73 65-140 (140)
89 2dhg_A TRNA selenocysteine ass 99.8 4.1E-20 1.4E-24 115.0 6.8 76 1-76 10-90 (104)
90 1u6f_A Tcubp1, RNA-binding pro 99.8 1.1E-19 3.7E-24 118.3 8.9 75 2-76 44-122 (139)
91 1wex_A Hypothetical protein (r 99.8 5.2E-20 1.8E-24 117.9 7.3 74 2-77 17-92 (104)
92 2dgt_A RNA-binding protein 30; 99.8 1.7E-19 5.7E-24 110.5 9.2 72 2-77 12-83 (92)
93 3v4m_A Splicing factor U2AF 65 99.8 3.6E-20 1.2E-24 118.7 6.4 64 12-75 27-96 (105)
94 2j76_E EIF-4B, EIF4B, eukaryot 99.8 4.5E-20 1.5E-24 115.2 6.6 74 1-76 20-98 (100)
95 2cqd_A RNA-binding region cont 99.8 2.1E-19 7.3E-24 114.0 9.9 73 2-75 19-95 (116)
96 3ex7_B RNA-binding protein 8A; 99.8 4.7E-20 1.6E-24 118.3 6.8 73 2-74 24-100 (126)
97 2e44_A Insulin-like growth fac 99.8 1.1E-19 3.6E-24 111.7 8.1 76 2-77 17-93 (96)
98 3s6e_A RNA-binding protein 39; 99.8 2.9E-20 9.9E-25 121.6 5.9 65 10-74 27-91 (114)
99 2kt5_A RNA and export factor-b 99.8 1.3E-19 4.6E-24 116.3 8.9 75 2-76 37-114 (124)
100 3tyt_A Heterogeneous nuclear r 99.8 1.1E-19 3.8E-24 126.9 9.1 73 2-75 6-79 (205)
101 2cpe_A RNA-binding protein EWS 99.8 7.4E-20 2.5E-24 115.5 7.4 76 2-77 17-104 (113)
102 2dh8_A DAZ-associated protein 99.8 9.4E-20 3.2E-24 113.7 7.8 74 2-76 18-95 (105)
103 1wi8_A EIF-4B, eukaryotic tran 99.8 1.6E-19 5.6E-24 112.7 8.9 74 2-77 17-95 (104)
104 2dnp_A RNA-binding protein 14; 99.8 1.2E-19 4.2E-24 110.7 8.1 72 2-77 11-82 (90)
105 1wf1_A RNA-binding protein RAL 99.8 9.7E-20 3.3E-24 114.9 7.8 72 2-77 29-101 (110)
106 3ue2_A Poly(U)-binding-splicin 99.8 1.3E-19 4.4E-24 118.9 8.6 66 10-75 35-108 (118)
107 1x5p_A Negative elongation fac 99.8 3.2E-19 1.1E-23 110.4 9.9 72 2-77 17-88 (97)
108 2kn4_A Immunoglobulin G-bindin 99.8 8.1E-20 2.8E-24 120.8 7.6 75 2-76 72-150 (158)
109 2la4_A Nuclear and cytoplasmic 99.8 7.9E-20 2.7E-24 113.4 7.0 71 2-74 29-99 (101)
110 2kvi_A Nuclear polyadenylated 99.8 7.9E-20 2.7E-24 113.2 6.9 71 2-76 12-83 (96)
111 2kxn_B Transformer-2 protein h 99.8 1E-19 3.5E-24 119.4 7.5 75 2-76 48-126 (129)
112 2jvo_A Nucleolar protein 3; nu 99.8 1.8E-19 6E-24 114.9 8.3 71 2-76 33-103 (108)
113 1h2v_Z 20 kDa nuclear CAP bind 99.8 2.4E-19 8.3E-24 119.0 9.2 76 2-77 41-120 (156)
114 1x4b_A Heterogeneous nuclear r 99.8 2.9E-19 9.9E-24 113.4 9.0 74 2-76 29-106 (116)
115 1x4f_A Matrin 3; structural ge 99.8 1E-19 3.5E-24 119.1 6.9 73 2-76 27-102 (112)
116 2dgu_A Heterogeneous nuclear r 99.8 2.2E-19 7.4E-24 112.2 7.9 72 2-77 13-84 (103)
117 2dgw_A Probable RNA-binding pr 99.8 4.2E-19 1.4E-23 108.3 9.0 74 1-76 11-87 (91)
118 4f02_A Polyadenylate-binding p 99.8 2.5E-19 8.6E-24 123.8 8.8 74 2-75 105-180 (213)
119 1sjr_A Polypyrimidine tract-bi 99.8 2E-19 6.9E-24 125.0 8.3 77 1-77 47-125 (164)
120 3d2w_A TAR DNA-binding protein 99.8 3.6E-19 1.2E-23 110.0 8.4 70 1-75 12-83 (89)
121 2m2b_A RNA-binding protein 10; 99.8 3.7E-20 1.3E-24 120.6 4.0 75 2-77 25-109 (131)
122 2dit_A HIV TAT specific factor 99.8 5.9E-19 2E-23 112.4 9.6 75 2-76 17-102 (112)
123 2db1_A Heterogeneous nuclear r 99.8 2.1E-19 7.1E-24 115.9 7.5 74 1-75 18-97 (118)
124 2cpd_A Apobec-1 stimulating pr 99.8 6.7E-19 2.3E-23 109.0 9.5 72 2-77 17-90 (99)
125 2dis_A Unnamed protein product 99.8 2.7E-19 9.3E-24 112.0 7.8 76 2-77 10-93 (109)
126 3md3_A Nuclear and cytoplasmic 99.8 6.4E-19 2.2E-23 114.1 9.8 76 2-77 2-80 (166)
127 1x5o_A RNA binding motif, sing 99.8 4E-19 1.4E-23 112.2 8.3 75 1-75 26-111 (114)
128 1x4e_A RNA binding motif, sing 99.8 5.3E-20 1.8E-24 110.9 4.1 73 1-73 6-82 (85)
129 3zzy_A Polypyrimidine tract-bi 99.8 7.6E-19 2.6E-23 118.0 10.1 75 1-76 29-106 (130)
130 3q2s_C Cleavage and polyadenyl 99.8 2.7E-19 9.2E-24 127.4 8.3 75 1-75 69-149 (229)
131 3md3_A Nuclear and cytoplasmic 99.8 5.9E-19 2E-23 114.3 9.2 73 2-74 89-165 (166)
132 1iqt_A AUF1, heterogeneous nuc 99.8 7.2E-20 2.5E-24 107.8 4.4 71 2-73 1-75 (75)
133 2rs2_A Musashi-1, RNA-binding 99.8 6.4E-19 2.2E-23 112.0 9.1 74 2-76 27-104 (109)
134 1jmt_A Splicing factor U2AF 35 99.8 2.3E-19 7.8E-24 114.6 6.8 62 12-73 38-103 (104)
135 2cpy_A RNA-binding protein 12; 99.8 2.9E-19 1E-23 114.0 7.2 74 1-75 16-93 (114)
136 1wg1_A KIAA1579 protein, homol 99.8 3.4E-19 1.2E-23 108.8 7.2 72 1-75 6-77 (88)
137 4f02_A Polyadenylate-binding p 99.8 6.2E-19 2.1E-23 121.8 9.2 75 2-76 17-95 (213)
138 1wez_A HnRNP H', FTP-3, hetero 99.8 4.1E-19 1.4E-23 112.3 7.4 77 1-79 16-95 (102)
139 2cqh_A IGF-II mRNA-binding pro 99.8 1.6E-19 5.4E-24 110.6 5.2 72 2-76 10-83 (93)
140 1rk8_A CG8781-PA, CG8781-PA pr 99.8 5.6E-19 1.9E-23 118.8 8.3 73 2-74 74-150 (165)
141 3beg_B Splicing factor, argini 99.8 4.3E-19 1.5E-23 113.8 7.4 70 2-74 18-92 (115)
142 2lea_A Serine/arginine-rich sp 99.8 2.4E-19 8.3E-24 118.2 6.3 75 2-76 49-127 (135)
143 1wg5_A Heterogeneous nuclear r 99.8 6.2E-19 2.1E-23 110.9 7.8 76 1-77 16-95 (104)
144 1wel_A RNA-binding protein 12; 99.8 1.5E-19 5E-24 116.6 5.0 75 1-76 26-104 (124)
145 2cpx_A Hypothetical protein FL 99.8 4.8E-19 1.6E-23 111.8 7.1 76 2-77 27-106 (115)
146 1fjc_A Nucleolin RBD2, protein 99.8 6.5E-19 2.2E-23 108.1 7.5 74 2-76 18-91 (96)
147 2cqg_A TDP-43, TAR DNA-binding 99.8 1.6E-18 5.6E-23 107.7 9.4 74 2-77 17-94 (103)
148 2g4b_A Splicing factor U2AF 65 99.8 8.7E-19 3E-23 114.9 8.5 72 2-73 96-171 (172)
149 2fc9_A NCL protein; structure 99.8 1.1E-18 3.8E-23 108.2 8.5 73 2-77 17-92 (101)
150 3egn_A RNA-binding protein 40; 99.8 9.2E-19 3.1E-23 114.8 8.2 74 2-75 47-129 (143)
151 2e5g_A U6 snRNA-specific termi 99.8 1.4E-18 4.7E-23 107.0 8.4 72 2-75 10-81 (94)
152 2qfj_A FBP-interacting repress 99.8 1.1E-18 3.9E-23 117.9 8.8 76 2-77 127-206 (216)
153 2dnn_A RNA-binding protein 12; 99.8 1.5E-18 5.1E-23 112.0 8.9 71 2-74 18-91 (109)
154 2hgl_A HNRPF protein, heteroge 99.8 4.4E-19 1.5E-23 118.7 6.4 73 2-75 46-124 (136)
155 1fj7_A Nucleolin RBD1, protein 99.8 1.1E-19 3.8E-24 112.7 2.8 73 2-76 19-95 (101)
156 2hzc_A Splicing factor U2AF 65 99.8 1.3E-18 4.5E-23 104.6 7.5 68 2-72 8-86 (87)
157 1fxl_A Paraneoplastic encephal 99.8 2.5E-18 8.4E-23 111.5 9.3 75 2-76 4-82 (167)
158 2cjk_A Nuclear polyadenylated 99.8 1.1E-18 3.8E-23 113.9 7.6 74 2-76 89-166 (167)
159 3nmr_A Cugbp ELAV-like family 99.8 1.4E-18 4.7E-23 113.7 7.9 73 2-74 97-175 (175)
160 2e5i_A Heterogeneous nuclear r 99.8 2.3E-18 7.9E-23 114.3 8.9 73 2-76 27-102 (124)
161 2lmi_A GRSF-1, G-rich sequence 99.8 4E-19 1.4E-23 112.2 5.0 74 1-75 12-91 (107)
162 1b7f_A Protein (SXL-lethal pro 99.8 2.3E-18 8E-23 112.2 8.3 74 2-75 5-82 (168)
163 2xs2_A Deleted in azoospermia- 99.8 2.2E-18 7.4E-23 107.0 7.3 72 2-75 11-85 (102)
164 2yh0_A Splicing factor U2AF 65 99.8 4.2E-18 1.4E-22 113.8 9.0 75 2-76 116-194 (198)
165 2bz2_A Negative elongation fac 99.8 2.3E-18 7.9E-23 112.1 7.5 72 2-77 41-112 (121)
166 3pgw_S U1-70K; protein-RNA com 99.8 2.9E-18 9.8E-23 132.1 9.0 75 2-76 104-182 (437)
167 2lcw_A RNA-binding protein FUS 99.6 7.7E-20 2.6E-24 116.3 0.0 75 2-76 9-95 (116)
168 1b7f_A Protein (SXL-lethal pro 99.7 4.1E-18 1.4E-22 111.1 8.0 72 2-73 91-168 (168)
169 2f3j_A RNA and export factor b 99.7 3.8E-18 1.3E-22 117.4 7.5 74 2-75 90-166 (177)
170 2hgn_A Heterogeneous nuclear r 99.7 9.3E-19 3.2E-23 117.6 4.2 75 2-78 48-125 (139)
171 1l3k_A Heterogeneous nuclear r 99.7 1E-17 3.4E-22 111.8 9.0 74 2-76 15-92 (196)
172 1l3k_A Heterogeneous nuclear r 99.7 1.1E-17 3.8E-22 111.6 9.0 75 2-77 106-184 (196)
173 2qfj_A FBP-interacting repress 99.7 6.7E-18 2.3E-22 114.1 8.0 75 2-76 30-108 (216)
174 2dnl_A Cytoplasmic polyadenyla 99.7 5.3E-18 1.8E-22 108.1 7.0 75 2-77 10-102 (114)
175 2fc8_A NCL protein; structure 99.7 8.5E-18 2.9E-22 104.1 7.8 72 2-76 17-92 (102)
176 3nmr_A Cugbp ELAV-like family 99.7 6.7E-18 2.3E-22 110.4 7.5 75 2-76 5-88 (175)
177 1qm9_A Polypyrimidine tract-bi 99.7 3.7E-18 1.3E-22 115.2 6.4 73 2-75 5-78 (198)
178 3pgw_A U1-A; protein-RNA compl 99.7 1.5E-17 5.1E-22 117.7 9.1 74 2-75 11-89 (282)
179 2adc_A Polypyrimidine tract-bi 99.7 7.8E-18 2.7E-22 117.4 7.2 73 2-75 36-109 (229)
180 2ghp_A U4/U6 snRNA-associated 99.7 2.4E-17 8.3E-22 117.1 9.5 74 2-76 212-291 (292)
181 1fje_B Nucleolin RBD12, protei 99.7 1.8E-17 6.1E-22 109.4 8.1 73 2-76 101-174 (175)
182 1wf0_A TDP-43, TAR DNA-binding 99.7 8.2E-18 2.8E-22 102.2 6.0 73 2-77 7-79 (88)
183 3u1l_A PRE-mRNA-splicing facto 99.7 1.2E-17 4.1E-22 121.5 7.9 71 2-74 136-227 (240)
184 1fxl_A Paraneoplastic encephal 99.7 2E-17 6.7E-22 107.2 7.7 72 2-73 90-167 (167)
185 3smz_A Protein raver-1, ribonu 99.7 2.9E-17 9.9E-22 116.3 8.8 76 2-77 186-265 (284)
186 3pgw_A U1-A; protein-RNA compl 99.7 3E-17 1E-21 116.1 8.8 72 2-74 209-281 (282)
187 2dha_A FLJ20171 protein; RRM d 99.7 8.1E-18 2.8E-22 110.9 5.3 73 1-74 24-103 (123)
188 2voo_A Lupus LA protein; RNA-b 99.7 4.8E-17 1.7E-21 113.0 9.0 73 2-75 111-186 (193)
189 2hgm_A HNRPF protein, heteroge 99.7 2.4E-17 8.2E-22 109.4 6.8 72 2-75 44-120 (126)
190 2diu_A KIAA0430 protein; struc 99.7 3.2E-17 1.1E-21 106.1 6.5 68 2-75 10-83 (96)
191 2ghp_A U4/U6 snRNA-associated 99.7 1.3E-16 4.5E-21 113.2 9.5 73 2-75 43-117 (292)
192 2cjk_A Nuclear polyadenylated 99.7 7.5E-17 2.6E-21 105.2 7.5 72 2-75 5-80 (167)
193 1qm9_A Polypyrimidine tract-bi 99.7 3.9E-17 1.3E-21 110.1 6.1 73 2-75 122-196 (198)
194 3sde_A Paraspeckle component 1 99.7 1.2E-16 4E-21 113.5 8.3 71 2-74 24-94 (261)
195 2j8a_A Histone-lysine N-methyl 99.7 1.2E-16 4E-21 109.0 7.9 74 1-74 3-94 (136)
196 3smz_A Protein raver-1, ribonu 99.7 2.1E-16 7.1E-21 111.9 8.5 76 2-77 97-176 (284)
197 2adc_A Polypyrimidine tract-bi 99.7 2E-16 6.9E-21 110.2 8.0 73 2-75 153-227 (229)
198 3dxb_A Thioredoxin N-terminall 99.7 1.3E-16 4.3E-21 110.8 6.9 70 6-75 135-212 (222)
199 2g4b_A Splicing factor U2AF 65 99.7 3.3E-16 1.1E-20 102.5 8.1 72 2-76 6-88 (172)
200 3sde_A Paraspeckle component 1 99.7 2.5E-16 8.4E-21 111.8 7.7 76 2-77 98-180 (261)
201 2yh0_A Splicing factor U2AF 65 99.6 5.6E-16 1.9E-20 103.4 8.6 71 2-75 6-87 (198)
202 3tyt_A Heterogeneous nuclear r 99.6 3E-16 1E-20 109.5 6.8 72 2-73 125-204 (205)
203 2d9o_A DNAJ (HSP40) homolog, s 99.6 8.3E-16 2.9E-20 98.3 7.8 65 10-77 27-91 (100)
204 3tht_A Alkylated DNA repair pr 99.6 5.5E-16 1.9E-20 117.6 7.8 71 2-74 20-97 (345)
205 1fje_B Nucleolin RBD12, protei 99.6 1E-16 3.5E-21 105.8 3.3 74 2-76 15-91 (175)
206 2dnr_A Synaptojanin-1; RRM dom 99.5 8.4E-14 2.9E-18 89.2 8.0 69 2-75 9-85 (91)
207 1owx_A Lupus LA protein, SS-B, 99.4 1.6E-12 5.5E-17 86.4 7.1 73 2-76 20-96 (121)
208 1ufw_A Synaptojanin 2; RNP dom 99.4 1.4E-12 4.9E-17 84.1 6.1 67 2-73 17-92 (95)
209 1wey_A Calcipressin 1; structu 98.4 2.7E-06 9.2E-11 55.4 8.9 77 2-80 7-88 (104)
210 2l9w_A U4/U6 snRNA-associated- 98.0 2E-05 6.8E-10 52.3 6.8 69 2-72 23-96 (117)
211 2kn4_A Immunoglobulin G-bindin 97.7 2.7E-05 9.2E-10 50.6 3.4 33 29-61 2-36 (158)
212 1wwh_A Nucleoporin 35, nucleop 97.6 0.00027 9.1E-09 46.8 7.7 57 14-73 37-94 (119)
213 2i2y_A Fusion protein consists 97.4 6E-05 2.1E-09 48.9 2.3 44 31-75 4-50 (150)
214 3p3d_A Nucleoporin 53; structu 97.4 0.00016 5.5E-09 48.7 4.4 63 11-74 17-97 (132)
215 3ctr_A Poly(A)-specific ribonu 96.8 0.0023 7.9E-08 41.4 5.1 53 3-59 8-60 (101)
216 2dhx_A Poly (ADP-ribose) polym 96.7 0.011 3.9E-07 38.2 7.8 69 1-74 9-82 (104)
217 1whv_A Poly(A)-specific ribonu 96.7 0.0034 1.2E-07 40.5 5.0 53 3-59 18-70 (100)
218 3pq1_A Poly(A) RNA polymerase; 95.5 0.01 3.5E-07 46.6 3.6 54 2-57 55-108 (464)
219 3d45_A Poly(A)-specific ribonu 93.5 0.15 5E-06 40.0 5.9 53 4-60 443-495 (507)
220 1uw4_A UPF3X; nonsense mediate 93.0 0.95 3.3E-05 28.0 8.2 62 4-65 5-72 (91)
221 2g0c_A ATP-dependent RNA helic 90.9 0.21 7.1E-06 29.0 3.1 44 26-74 32-75 (76)
222 2l08_A Regulator of nonsense t 83.0 1.4 4.7E-05 27.9 3.6 63 3-65 12-80 (97)
223 1gcc_A Ethylene responsive ele 67.5 10 0.00035 21.6 4.2 22 37-58 25-46 (63)
224 3swz_A Steroid 17-alpha-hydrox 62.6 12 0.00041 27.1 4.8 50 14-69 32-81 (494)
225 2dyi_A Probable 16S rRNA-proce 62.3 13 0.00044 24.7 4.5 47 26-82 42-89 (162)
226 3h9n_A Ribosome maturation fac 55.5 20 0.00068 24.0 4.6 39 38-82 56-95 (177)
227 3ts2_A Protein LIN-28 homolog 54.6 2.9 9.9E-05 27.7 0.2 28 16-47 3-30 (148)
228 3tbg_A Cytochrome P450 2D6; mo 54.5 11 0.00037 26.9 3.3 47 15-67 34-80 (479)
229 4e8u_A Putative uncharacterize 53.6 14 0.00046 25.5 3.5 34 15-49 36-73 (172)
230 2f1l_A 16S rRNA processing pro 52.0 20 0.00067 24.4 4.2 39 38-82 74-113 (187)
231 3e6i_A CYPIIE1, P450-J, cytoch 50.6 17 0.00059 25.9 3.8 40 13-57 32-71 (476)
232 1wvf_A 4-cresol dehydrogenase 50.2 19 0.00065 27.6 4.2 39 17-55 218-261 (520)
233 2lfv_A Protein DAMX; cell divi 55.6 3.4 0.00012 26.1 0.0 63 4-67 26-93 (106)
234 2e7g_A Putative ribosome-bindi 50.0 16 0.00055 23.4 3.3 37 24-60 43-83 (129)
235 3ld6_A Lanosterol 14-alpha dem 49.7 18 0.00061 26.0 3.8 45 16-66 36-80 (461)
236 4bby_A Alkyldihydroxyacetoneph 48.7 18 0.00062 28.7 4.0 43 16-58 359-408 (658)
237 3n9y_A Cholesterol SIDE-chain 48.1 20 0.00069 25.7 3.9 38 15-57 36-73 (487)
238 2qgg_A 16S rRNA-processing pro 47.1 21 0.00073 24.0 3.7 39 38-82 65-104 (182)
239 1jos_A RBFA, ribosome-binding 45.8 28 0.00096 22.2 4.0 33 24-56 34-69 (128)
240 3mdm_A Cholesterol 24-hydroxyl 45.6 29 0.00098 24.7 4.4 40 12-56 11-50 (456)
241 3lpe_A Putative transcription 44.6 48 0.0017 19.7 4.9 50 11-61 23-73 (92)
242 3nxu_A Cytochrome P450 3A4; al 44.0 25 0.00087 25.1 3.9 45 17-66 39-83 (485)
243 2kkc_A Sequestosome-1; P62, PB 44.0 36 0.0012 21.3 4.2 57 10-71 44-100 (102)
244 3h7h_B Transcription elongatio 42.6 30 0.001 21.6 3.6 35 26-61 40-74 (106)
245 2kzf_A RBFA, ribosome-binding 41.9 24 0.00083 21.7 3.1 34 24-57 35-69 (106)
246 3k9v_A 1,25-dihydroxyvitamin D 39.8 36 0.0012 24.2 4.1 39 14-57 51-89 (482)
247 1e8g_A Vanillyl-alcohol oxidas 39.3 28 0.00096 27.0 3.7 34 23-56 258-294 (560)
248 3ejb_B Biotin biosynthesis cyt 39.0 34 0.0012 24.2 3.9 44 17-67 18-61 (404)
249 2ktr_A Sequestosome-1; autopha 38.8 47 0.0016 21.4 4.2 57 10-71 59-115 (117)
250 2dyj_A Ribosome-binding factor 38.3 32 0.0011 20.8 3.2 37 24-60 30-67 (95)
251 3i3k_A Lanosterol 14-alpha dem 36.9 37 0.0013 24.2 3.8 36 17-57 37-72 (461)
252 3pgw_S U1-70K; protein-RNA com 36.8 3.7 0.00013 31.2 -1.6 41 15-55 7-58 (437)
253 3pm0_A Cypib1, cytochrome P450 36.4 36 0.0012 24.4 3.7 48 14-67 31-78 (507)
254 2k5n_A Putative cold-shock pro 35.9 15 0.00052 21.5 1.3 42 35-77 11-55 (74)
255 2kcm_A Cold shock domain famil 35.4 14 0.00047 21.7 1.1 43 35-77 9-56 (74)
256 3cam_A Cold-shock domain famil 34.9 16 0.00056 20.8 1.3 42 35-76 10-56 (67)
257 3b6h_A Prostacyclin synthase; 34.5 40 0.0014 24.3 3.7 38 15-57 42-79 (498)
258 1c9o_A CSPB, cold-shock protei 34.5 17 0.00057 20.5 1.3 41 35-76 10-55 (66)
259 1g6p_A Cold shock protein TMCS 33.6 13 0.00043 21.1 0.7 42 35-77 9-55 (66)
260 2hfs_A Mevalonate kinase, puta 33.1 56 0.0019 22.7 4.2 42 17-59 269-310 (332)
261 3a0j_A Cold shock protein; OB- 32.8 18 0.00062 20.9 1.3 41 35-76 10-55 (73)
262 2oi2_A Mevalonate kinase; enzy 32.2 94 0.0032 20.9 5.1 43 16-59 238-280 (292)
263 1po5_A Cytochrome P450 2B4; ox 30.7 57 0.0019 23.4 3.9 37 15-56 34-70 (476)
264 3pm9_A Putative oxidoreductase 30.6 56 0.0019 24.9 4.1 44 16-59 202-252 (476)
265 3a4g_A Vitamin D hydroxylase; 29.6 53 0.0018 23.5 3.7 36 17-57 25-60 (411)
266 3abb_A CYP105D6, cytochrome P4 29.4 69 0.0024 22.7 4.2 36 18-57 30-65 (408)
267 2hi4_A Cytochrome P450 1A2; CY 29.4 54 0.0019 23.7 3.7 38 15-57 39-76 (495)
268 2exu_A Transcription initiatio 29.2 68 0.0023 22.3 4.0 37 27-64 139-175 (200)
269 3hul_A HSK, HK, homoserine kin 28.5 1.2E+02 0.0043 21.2 5.4 41 17-61 230-270 (298)
270 3czh_A Cytochrome P450 2R1; vi 27.8 53 0.0018 23.8 3.4 38 15-57 38-75 (481)
271 3fhk_A UPF0403 protein YPHP; d 27.6 26 0.00087 23.7 1.5 25 39-63 25-49 (147)
272 3qz1_A Steroid 21-hydroxylase; 27.5 39 0.0013 24.2 2.6 50 12-67 44-93 (496)
273 2cqy_A Propionyl-COA carboxyla 27.4 68 0.0023 18.1 3.3 55 17-74 37-96 (108)
274 2qhp_A Fructokinase; NP_810670 27.4 92 0.0032 21.0 4.4 41 2-43 41-81 (296)
275 1gwi_A CYP154C1, cytochrome P4 26.8 87 0.003 22.3 4.4 36 18-57 23-58 (411)
276 2yty_A Cold shock domain-conta 26.6 29 0.00098 20.9 1.5 47 24-76 20-70 (88)
277 3v8d_A Cholesterol 7-alpha-mon 26.1 65 0.0022 23.2 3.6 36 17-57 39-74 (491)
278 1odo_A Putative cytochrome P45 25.7 89 0.003 22.1 4.2 35 18-57 21-55 (408)
279 3p8b_B Transcription antitermi 25.7 56 0.0019 20.9 2.9 54 13-67 18-73 (152)
280 4f3q_A Transcriptional regulat 25.4 1.1E+02 0.0037 21.9 4.6 42 2-47 99-147 (247)
281 3dax_A Cytochrome P450 7A1; ch 25.4 63 0.0021 23.1 3.4 38 15-57 37-74 (491)
282 3bsu_A Ribonuclease H1, RNAse 25.2 33 0.0011 18.8 1.4 22 38-59 31-52 (53)
283 3s79_A Cytochrome P450 19A1; o 25.1 63 0.0021 23.2 3.3 36 17-57 74-109 (503)
284 4hac_A Mevalonate kinase; GHMP 24.8 1E+02 0.0035 21.7 4.4 41 17-59 262-302 (321)
285 3b98_A Prostaglandin I2 syntha 24.7 66 0.0022 22.9 3.4 37 16-57 43-79 (475)
286 1wfq_A UNR protein; beta-barre 24.7 33 0.0011 20.7 1.5 18 24-47 20-37 (89)
287 2ytv_A Cold shock domain-conta 24.6 28 0.00096 20.5 1.2 18 24-47 10-27 (79)
288 2kp5_A Putative uncharacterize 24.2 38 0.0013 19.8 1.7 22 24-49 38-59 (92)
289 2cd8_A Cytochrome P450 monooxy 24.1 94 0.0032 22.4 4.1 37 17-57 51-87 (436)
290 3q2o_A Phosphoribosylaminoimid 23.9 89 0.0031 22.3 4.0 58 16-74 138-203 (389)
291 2ytx_A Cold shock domain-conta 23.7 23 0.00078 21.7 0.6 38 37-74 27-68 (97)
292 1kon_A Protein YEBC, YEBC; alp 23.6 1.9E+02 0.0065 20.7 5.6 42 2-47 99-147 (249)
293 1w2w_A 5-methylthioribose-1-ph 23.2 73 0.0025 22.2 3.3 31 29-59 17-49 (211)
294 2fdv_A Cytochrome P450 2A6; CY 22.5 88 0.003 22.4 3.7 37 15-56 34-70 (476)
295 2uuu_A Alkyldihydroxyacetoneph 22.5 91 0.0031 24.5 4.0 45 15-59 288-339 (584)
296 2zbx_A Cytochrome P450-SU1; be 22.4 87 0.003 22.3 3.6 37 17-57 29-66 (412)
297 1r9o_A Cytochrome P450 2C9; mo 21.9 66 0.0023 23.0 2.9 37 16-57 36-72 (477)
298 2lss_A Cold shock-like protein 27.4 19 0.00066 20.6 0.0 40 35-75 13-58 (70)
299 3gw9_A Sterol 14alpha-demethyl 21.6 74 0.0025 22.3 3.1 46 16-67 28-74 (450)
300 1pa4_A Probable ribosome-bindi 21.5 19 0.00066 22.6 -0.0 36 25-60 33-71 (116)
301 2ij2_A Cytochrome P450 BM3; mo 21.4 94 0.0032 22.4 3.7 36 16-56 28-63 (470)
302 1d4b_A CIDE B, human cell deat 21.4 1.4E+02 0.0047 19.4 4.1 49 28-80 36-86 (122)
303 1h95_A CSD, Y-box binding prot 21.3 81 0.0028 18.3 2.8 42 35-76 17-67 (79)
304 2pg9_A Phosphomevalonate kinas 21.3 1.7E+02 0.0057 20.8 5.0 56 15-74 277-332 (337)
305 3oo3_A OXY protein; cytochrome 21.0 42 0.0014 23.5 1.7 48 17-67 17-64 (384)
306 3i2z_B RNA chaperone, negative 21.0 86 0.0029 17.8 2.8 41 35-76 14-60 (71)
307 2od0_A Hypothetical protein VP 20.7 1.2E+02 0.004 18.1 3.5 48 12-59 4-61 (105)
308 3k17_A LIN0012 protein; protei 20.6 46 0.0016 24.3 1.8 42 16-59 299-340 (365)
309 2eel_A Cell death activator CI 20.5 1.4E+02 0.0047 18.3 3.8 48 30-80 12-61 (91)
310 1vm7_A Ribokinase; TM0960, str 20.3 2.2E+02 0.0074 19.5 5.4 42 2-45 69-110 (311)
311 3aqq_A Calcium-regulated heat 20.2 40 0.0014 22.4 1.3 37 35-72 71-111 (147)
No 1
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.89 E-value=7e-23 Score=129.20 Aligned_cols=73 Identities=26% Similarity=0.302 Sum_probs=70.0
Q ss_pred eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecC
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYH 74 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~ 74 (83)
+|||++|+.+..+++|++.|++||+|.+|+|+.|. ++|||||+|.++++|++|++.|||..|.|++|.|+.|+
T Consensus 21 ~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~Ak 97 (99)
T 4fxv_A 21 NLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR 97 (99)
T ss_dssp EEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence 79999999999999999999999999999999875 48999999999999999999999999999999999985
No 2
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.88 E-value=1.5e-22 Score=130.16 Aligned_cols=74 Identities=18% Similarity=0.118 Sum_probs=71.1
Q ss_pred eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCC
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHD 75 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g 75 (83)
||||++|+.+..+++|++.|++||+|.+|+|+.|. ++|||||+|.++++|++|++.|||..|.|++|.|+++..
T Consensus 8 ~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a~~ 85 (110)
T 3s8s_A 8 EVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLDIK 85 (110)
T ss_dssp EEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECST
T ss_pred EEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 79999999999999999999999999999999876 589999999999999999999999999999999999974
No 3
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.88 E-value=1.9e-22 Score=129.29 Aligned_cols=74 Identities=22% Similarity=0.372 Sum_probs=71.0
Q ss_pred eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC--CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCC
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG--GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHD 75 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~--~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g 75 (83)
+|||++|+.+..+++|++.|++||+|.+|+|+.+. ++|||||.|.++|+|++|++.|||..|.|++|.|..|..
T Consensus 7 ~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~ 82 (115)
T 4f25_A 7 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 82 (115)
T ss_dssp EEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSC
T ss_pred EEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 79999999999999999999999999999999986 589999999999999999999999999999999999874
No 4
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.87 E-value=4.3e-22 Score=119.20 Aligned_cols=76 Identities=17% Similarity=0.231 Sum_probs=72.0
Q ss_pred CeEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCC
Q psy11609 1 MALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDV 76 (83)
Q Consensus 1 ~~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~ 76 (83)
+||||++++.+..+++|++.|++||+|.+|+++.+. ++|||||.|.++++|++|++.|||..+.|++|.|..++..
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKL 81 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcC
Confidence 489999999999999999999999999999999875 4899999999999999999999999999999999999854
No 5
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.86 E-value=1.2e-21 Score=118.03 Aligned_cols=75 Identities=20% Similarity=0.271 Sum_probs=71.7
Q ss_pred eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC-----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCC
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG-----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDV 76 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~-----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~ 76 (83)
||||++++.+..+++|++.|++||+|.+|+++.+. ++|||||.|.++++|++|+..|||..+.|++|.|+.+..+
T Consensus 6 ~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 85 (88)
T 4a8x_A 6 KVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAVLAP 85 (88)
T ss_dssp EEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEECCC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEECCCC
Confidence 79999999999999999999999999999999886 6889999999999999999999999999999999999754
No 6
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.86 E-value=4.6e-22 Score=125.75 Aligned_cols=73 Identities=14% Similarity=0.183 Sum_probs=68.6
Q ss_pred eEeeeecCCcchhhHHHHHhccCCc--eeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCc----eecCeeeEEE
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGK--VSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEK----HFFGCKIDVS 71 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~--Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~----~~~g~~i~V~ 71 (83)
||||++|+.++.+++|++.|++||. |.+|+|++|. ++|||||+|.++++|++|++.|||. .++||+|.|+
T Consensus 11 tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i~V~ 90 (95)
T 2lkz_A 11 TIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTIGVD 90 (95)
T ss_dssp EEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEEEEE
T ss_pred EEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEEEEE
Confidence 8999999999999999999999995 6789999986 6899999999999999999999997 6999999999
Q ss_pred ecC
Q psy11609 72 PYH 74 (83)
Q Consensus 72 ~a~ 74 (83)
.|+
T Consensus 91 ~Ak 93 (95)
T 2lkz_A 91 FAK 93 (95)
T ss_dssp ECC
T ss_pred Ecc
Confidence 986
No 7
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.86 E-value=2.1e-22 Score=123.61 Aligned_cols=77 Identities=16% Similarity=0.214 Sum_probs=67.8
Q ss_pred CeEeeeecCCcchhhHHHHHhccCC--ceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecC
Q psy11609 1 MALFIYVVSDTSLKDGLYHEYKKHG--KVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYH 74 (83)
Q Consensus 1 ~~lfv~k~~d~~~~d~L~~eF~kfG--~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~ 74 (83)
+||||++|+.+..+++|++.|++|| +|.+|+|+.+. ++|||||+|.++++|++|++.|||..+.|++|.|..+.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4899999999999999999999999 99999999985 58999999999999999999999999999999999998
Q ss_pred CCC
Q psy11609 75 DVD 77 (83)
Q Consensus 75 g~~ 77 (83)
.+.
T Consensus 82 ~~~ 84 (90)
T 3p5t_L 82 KLE 84 (90)
T ss_dssp ---
T ss_pred CCc
Confidence 543
No 8
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.85 E-value=2.8e-21 Score=116.47 Aligned_cols=75 Identities=20% Similarity=0.233 Sum_probs=70.2
Q ss_pred eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCC
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDV 76 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~ 76 (83)
+|||++++.+..+++|++.|++||+|.+|+++.+. ++|||||.|.++++|++|++.|||..+.|++|.|..+..+
T Consensus 8 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~k 86 (87)
T 3bs9_A 8 HVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRK 86 (87)
T ss_dssp EEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC--
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecCCC
Confidence 79999999999999999999999999999999875 4899999999999999999999999999999999998753
No 9
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.85 E-value=2.1e-21 Score=116.57 Aligned_cols=73 Identities=22% Similarity=0.271 Sum_probs=69.5
Q ss_pred eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecC
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYH 74 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~ 74 (83)
+|||++++.+..+++|++.|++||+|.+|+++.+. ++|||||.|.++++|++|++.|||..+.|++|.|+.|.
T Consensus 9 ~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ak 85 (85)
T 3mdf_A 9 VLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAK 85 (85)
T ss_dssp EEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred EEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 79999999999999999999999999999998874 58999999999999999999999999999999999874
No 10
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.85 E-value=9.8e-22 Score=123.28 Aligned_cols=73 Identities=19% Similarity=0.138 Sum_probs=70.0
Q ss_pred eEeeeecCC------cchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecC-eeeEE
Q psy11609 2 ALFIYVVSD------TSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFG-CKIDV 70 (83)
Q Consensus 2 ~lfv~k~~d------~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g-~~i~V 70 (83)
||||++|+. +..+++|++.|++||+|.+|+|+.+. ++|||||+|.++++|++|++.|||..|.| ++|.|
T Consensus 8 ~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~l~V 87 (100)
T 3ns6_A 8 YIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHRLFL 87 (100)
T ss_dssp EEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCBCEE
T ss_pred EEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeEEEE
Confidence 799999999 99999999999999999999999886 58999999999999999999999999999 99999
Q ss_pred EecC
Q psy11609 71 SPYH 74 (83)
Q Consensus 71 ~~a~ 74 (83)
..|.
T Consensus 88 ~~a~ 91 (100)
T 3ns6_A 88 YTMK 91 (100)
T ss_dssp EESH
T ss_pred EECc
Confidence 9986
No 11
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.85 E-value=5.9e-22 Score=122.89 Aligned_cols=75 Identities=13% Similarity=0.303 Sum_probs=69.3
Q ss_pred eEeeeecCCcchhhHHHHHhccCC-ceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcC-CceecCeeeEEEecCC
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHG-KVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSH-EKHFFGCKIDVSPYHD 75 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG-~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~n-g~~~~g~~i~V~~a~g 75 (83)
+|||.+|+.+..+++|++.|++|| +|.+|+|++|. ++|||||+|.++|+|++|++.++ +..+.|++|.|+.|..
T Consensus 3 ~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a~~ 82 (91)
T 2lxi_A 3 IVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYSDP 82 (91)
T ss_dssp EEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECCCS
T ss_pred EEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEcCC
Confidence 799999999999999999999999 89999999875 68999999999999999999885 5679999999999984
Q ss_pred C
Q psy11609 76 V 76 (83)
Q Consensus 76 ~ 76 (83)
+
T Consensus 83 ~ 83 (91)
T 2lxi_A 83 K 83 (91)
T ss_dssp C
T ss_pred C
Confidence 3
No 12
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=5.9e-21 Score=121.42 Aligned_cols=76 Identities=18% Similarity=0.160 Sum_probs=71.5
Q ss_pred eEeeeecCCcchhhHHH---HHhccCCceeEEEEeccC-------CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEE
Q psy11609 2 ALFIYVVSDTSLKDGLY---HEYKKHGKVSWVKIIGQG-------GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVS 71 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~---~eF~kfG~Itsv~V~~d~-------~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~ 71 (83)
+|||++|+.+..+++|. +.|++||+|.+|+|+.+. ++|||||+|.++++|++|+..|||..|.|++|.|.
T Consensus 17 ~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~ 96 (111)
T 2cpi_A 17 LVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTLKAS 96 (111)
T ss_dssp CEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred EEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEEEEEE
Confidence 79999999999999999 999999999999999875 35899999999999999999999999999999999
Q ss_pred ecCCCC
Q psy11609 72 PYHDVD 77 (83)
Q Consensus 72 ~a~g~~ 77 (83)
.|+...
T Consensus 97 ~a~~k~ 102 (111)
T 2cpi_A 97 LGTTKY 102 (111)
T ss_dssp SCCCCS
T ss_pred eccccc
Confidence 998654
No 13
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.85 E-value=2.1e-21 Score=126.18 Aligned_cols=76 Identities=12% Similarity=0.104 Sum_probs=71.4
Q ss_pred eEeeeecCCcchhhHHHHHhccCC-ceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCCC
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHG-KVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDVD 77 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG-~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~~ 77 (83)
+|||++|+.++.+++|++.|++|| +|+.|+|+.+.++|||||+|.++|+|++|++.|||..|.|++|.|+.+.++.
T Consensus 30 ~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~~~p 106 (111)
T 2jvr_A 30 RITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDDNPP 106 (111)
T ss_dssp EEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESCC--
T ss_pred EEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCCC
Confidence 799999999999999999999999 9999999877799999999999999999999999999999999999998664
No 14
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=5.4e-21 Score=118.67 Aligned_cols=75 Identities=20% Similarity=0.166 Sum_probs=71.0
Q ss_pred eEeeeecCCcchhhHHH----HHhccCCceeEEEEeccCC-ceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCC
Q psy11609 2 ALFIYVVSDTSLKDGLY----HEYKKHGKVSWVKIIGQGG-DRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDV 76 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~----~eF~kfG~Itsv~V~~d~~-~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~ 76 (83)
+|||++++.+..+++|+ +.|++||+|.+|+|+.+.. +|||||+|.++++|++|++.|||..|.|++|.|+.|...
T Consensus 11 ~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~~a~~~ 90 (96)
T 2dgx_A 11 DVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVSLATGA 90 (96)
T ss_dssp EEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCS
T ss_pred EEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 79999999999999999 9999999999999998753 899999999999999999999999999999999999854
No 15
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=7e-21 Score=118.55 Aligned_cols=77 Identities=18% Similarity=0.238 Sum_probs=72.6
Q ss_pred eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC--CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCCCc
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG--GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDVDF 78 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~--~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~~~ 78 (83)
+|||++|+.+..+++|++.|++||+|.+|+|+.+. ++|||||.|.++++|++|+..|||..|.|++|.|..+..+..
T Consensus 17 ~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~ 95 (103)
T 2cqi_A 17 TLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSS 95 (103)
T ss_dssp EEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCTTC
T ss_pred EEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEECCCCcc
Confidence 79999999999999999999999999999999976 589999999999999999999999999999999999986543
No 16
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=7.2e-21 Score=117.53 Aligned_cols=76 Identities=22% Similarity=0.215 Sum_probs=72.1
Q ss_pred eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCCC
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDVD 77 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~~ 77 (83)
||||++++.+..+++|++.|++||+|.+|+|+.+. ++|||||.|.++++|++|+..|||..|.|++|.|..+...+
T Consensus 10 ~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 89 (99)
T 1whw_A 10 RLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPSTIKK 89 (99)
T ss_dssp EEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEECCCCS
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCCc
Confidence 79999999999999999999999999999999876 58999999999999999999999999999999999998554
No 17
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.7e-20 Score=116.83 Aligned_cols=76 Identities=24% Similarity=0.256 Sum_probs=72.0
Q ss_pred eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC--CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCCC
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG--GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDVD 77 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~--~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~~ 77 (83)
+|||++++.+..+++|++.|++||+|.+|+|+.+. ++|||||+|.++++|++|+..|||..|.|++|.|..+....
T Consensus 17 ~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 94 (103)
T 2cq3_A 17 RLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARV 94 (103)
T ss_dssp EEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCSSC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEcccCC
Confidence 79999999999999999999999999999999876 59999999999999999999999999999999999998544
No 18
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.84 E-value=9e-21 Score=121.65 Aligned_cols=74 Identities=20% Similarity=0.207 Sum_probs=64.0
Q ss_pred eEeeeecC-----CcchhhHHHHHhccCCceeEEEEeccC-----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEE
Q psy11609 2 ALFIYVVS-----DTSLKDGLYHEYKKHGKVSWVKIIGQG-----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVS 71 (83)
Q Consensus 2 ~lfv~k~~-----d~~~~d~L~~eF~kfG~Itsv~V~~d~-----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~ 71 (83)
+|++.++. ++.++++|+++|++||+|.+|+|+.++ ++|||||.|.++++|.+|+++|||++|.||+|.|.
T Consensus 10 ~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~i~v~ 89 (105)
T 2pe8_A 10 VVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRVVKAC 89 (105)
T ss_dssp EEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred EEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcEEEEE
Confidence 45666554 356889999999999999999999863 58999999999999999999999999999999999
Q ss_pred ecCC
Q psy11609 72 PYHD 75 (83)
Q Consensus 72 ~a~g 75 (83)
.|+.
T Consensus 90 ~a~~ 93 (105)
T 2pe8_A 90 FYNL 93 (105)
T ss_dssp ECCH
T ss_pred EcCH
Confidence 9974
No 19
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=1e-20 Score=115.69 Aligned_cols=73 Identities=22% Similarity=0.326 Sum_probs=69.5
Q ss_pred eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecC
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYH 74 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~ 74 (83)
+|||++++.+..+++|++.|++||+|.+|+++.+. ++|||||.|.++++|++|++.|||..|.|++|.|+.|.
T Consensus 18 ~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ak 94 (94)
T 2e5h_A 18 TVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASIAI 94 (94)
T ss_dssp SEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEECC
T ss_pred EEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEecC
Confidence 79999999999999999999999999999999975 48899999999999999999999999999999999874
No 20
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.84 E-value=9.1e-21 Score=116.06 Aligned_cols=73 Identities=23% Similarity=0.382 Sum_probs=69.9
Q ss_pred eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC---CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecC
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG---GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYH 74 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~---~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~ 74 (83)
+|||++++.+..+++|++.|++||+|.+|+|+.+. ++|||||.|.++++|++|++.|||..|.|++|.|..+.
T Consensus 18 ~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 93 (95)
T 2ywk_A 18 TVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGPS 93 (95)
T ss_dssp EEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred EEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEcC
Confidence 79999999999999999999999999999999875 48999999999999999999999999999999999886
No 21
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.84 E-value=8.9e-21 Score=117.02 Aligned_cols=76 Identities=9% Similarity=0.156 Sum_probs=72.1
Q ss_pred eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCCC
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDVD 77 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~~ 77 (83)
+|||++++.+..+++|++.|++||+|.+|+|+.+. ++|||||.|.++++|++|+..|||..+.|++|.|..+..+.
T Consensus 4 ~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 83 (96)
T 2x1f_A 4 VVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSNSD 83 (96)
T ss_dssp EEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCSS
T ss_pred EEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCCCC
Confidence 79999999999999999999999999999999875 48999999999999999999999999999999999998654
No 22
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.84 E-value=1.8e-20 Score=113.28 Aligned_cols=73 Identities=18% Similarity=0.321 Sum_probs=69.7
Q ss_pred eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCC
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHD 75 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g 75 (83)
||||++++.+..+++|++.|++||+|.+|+++.+. ++|||||.|.++++|++|+ .|||..+.|++|.|..+..
T Consensus 8 ~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 8 SIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp EEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETTT
T ss_pred EEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEccC
Confidence 79999999999999999999999999999999874 5899999999999999999 9999999999999999874
No 23
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.84 E-value=8.5e-21 Score=119.64 Aligned_cols=75 Identities=15% Similarity=0.177 Sum_probs=69.5
Q ss_pred eEeeeecCCcc------hhhHHHHHhccCCceeEEEEeccC--CceEEEEEeCCchHHHHHHhhcCCceecCe-eeEEEe
Q psy11609 2 ALFIYVVSDTS------LKDGLYHEYKKHGKVSWVKIIGQG--GDRYGLVCFKKADDAEKAILGSHEKHFFGC-KIDVSP 72 (83)
Q Consensus 2 ~lfv~k~~d~~------~~d~L~~eF~kfG~Itsv~V~~d~--~~g~afV~F~~pEdA~~A~~~~ng~~~~g~-~i~V~~ 72 (83)
+|||++++.++ ++++|++.|++||+|.+|+|++.. ++|||||+|.++++|++|+..|||..|.|+ +|.|..
T Consensus 17 ~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l~V~~ 96 (105)
T 2nlw_A 17 VIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRVNL 96 (105)
T ss_dssp EEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCEEEEEC
T ss_pred EEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCceEEEEE
Confidence 79999999988 789999999999999999998543 689999999999999999999999999999 999999
Q ss_pred cCCC
Q psy11609 73 YHDV 76 (83)
Q Consensus 73 a~g~ 76 (83)
|...
T Consensus 97 a~~~ 100 (105)
T 2nlw_A 97 FTDF 100 (105)
T ss_dssp SCCC
T ss_pred cchH
Confidence 9754
No 24
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=1.2e-20 Score=115.49 Aligned_cols=75 Identities=16% Similarity=0.278 Sum_probs=71.3
Q ss_pred eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCC
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDV 76 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~ 76 (83)
+|||++++.+..+++|++.|++||+|.+|+|+.+. ++|||||.|.++++|++|++.|||..+.|++|+|+.+...
T Consensus 7 ~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 85 (95)
T 2dnz_A 7 GLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVTER 85 (95)
T ss_dssp EEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEESSCC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEcccc
Confidence 79999999999999999999999999999999975 5899999999999999999999999999999999999843
No 25
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.2e-20 Score=117.44 Aligned_cols=76 Identities=14% Similarity=0.263 Sum_probs=71.6
Q ss_pred eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCCC
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDVD 77 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~~ 77 (83)
+|||++++.+..+++|++.|++||+|.+|+|+.+. ++|||||.|.++++|++|+..|||..|.|++|.|..++...
T Consensus 17 ~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 96 (103)
T 2cq0_A 17 TIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWAKPST 96 (103)
T ss_dssp EEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEESSCCC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEECCCCC
Confidence 79999999999999999999999999999999875 48999999999999999999999999999999999998543
No 26
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=7.1e-21 Score=116.74 Aligned_cols=76 Identities=21% Similarity=0.272 Sum_probs=71.7
Q ss_pred eEeeeecCCcchhhHHHHHhccCCceeEE-EEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCC
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWV-KIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDV 76 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv-~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~ 76 (83)
+|||++++.+..+++|++.|++||+|.+| +|+.+. ++|||||.|.++++|++|+..|||..|.|++|.|..+..+
T Consensus 7 ~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 86 (96)
T 1x5t_A 7 GIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKK 86 (96)
T ss_dssp EEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEESCCC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEeccc
Confidence 79999999999999999999999999999 999874 5899999999999999999999999999999999999854
Q ss_pred C
Q psy11609 77 D 77 (83)
Q Consensus 77 ~ 77 (83)
+
T Consensus 87 ~ 87 (96)
T 1x5t_A 87 D 87 (96)
T ss_dssp C
T ss_pred C
Confidence 4
No 27
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.2e-20 Score=115.25 Aligned_cols=73 Identities=23% Similarity=0.279 Sum_probs=69.7
Q ss_pred eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecC
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYH 74 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~ 74 (83)
+|||++++.+..+++|++.|++||+|.+|+++.+. ++|||||.|.++++|++|+..|||..+.|++|.|+.+.
T Consensus 17 ~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 93 (95)
T 2cqc_A 17 CLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSGPS 93 (95)
T ss_dssp CEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCS
T ss_pred EEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEecC
Confidence 79999999999999999999999999999999875 48999999999999999999999999999999999886
No 28
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.84 E-value=3.1e-21 Score=119.80 Aligned_cols=76 Identities=21% Similarity=0.280 Sum_probs=72.7
Q ss_pred CeEeeeecCCcchhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCCC
Q psy11609 1 MALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDVD 77 (83)
Q Consensus 1 ~~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~~ 77 (83)
.||||++++.+..+++|++.|++||+|.+|+++.+ ++|||||.|.++++|++|+..|||..+.|++|.|..+..+.
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 76 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMP 76 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCC
Confidence 58999999999999999999999999999999998 89999999999999999999999999999999999998554
No 29
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.84 E-value=4.1e-21 Score=115.60 Aligned_cols=69 Identities=14% Similarity=0.153 Sum_probs=64.4
Q ss_pred eEeeeecCCcc------hhhHHHHHhccCCceeEEEEeccC--CceEEEEEeCCchHHHHHHhhcCCceecCe-eeEE
Q psy11609 2 ALFIYVVSDTS------LKDGLYHEYKKHGKVSWVKIIGQG--GDRYGLVCFKKADDAEKAILGSHEKHFFGC-KIDV 70 (83)
Q Consensus 2 ~lfv~k~~d~~------~~d~L~~eF~kfG~Itsv~V~~d~--~~g~afV~F~~pEdA~~A~~~~ng~~~~g~-~i~V 70 (83)
||||++++.+. ++++|++.|++||+|.+|+++++. ++|||||.|.++++|++|+..|||..|.|+ +|.|
T Consensus 3 ~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 3 VIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp EEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEe
Confidence 79999999888 779999999999999999998543 689999999999999999999999999999 9987
No 30
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=1.1e-20 Score=117.64 Aligned_cols=76 Identities=17% Similarity=0.336 Sum_probs=71.8
Q ss_pred eEeeeecCCcchhhHHHHHhccCCceeEEEEecc--CCceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCCC
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQ--GGDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDVD 77 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d--~~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~~ 77 (83)
+|||++++.+..+++|++.|++||+|.+|+|+.+ .++|||||.|.++++|++|+..|||..|.|++|.|..+...+
T Consensus 17 ~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~ 94 (103)
T 2d9p_A 17 NLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKE 94 (103)
T ss_dssp CEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECSSCC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEecccc
Confidence 7999999999999999999999999999999987 468999999999999999999999999999999999998543
No 31
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=4.9e-21 Score=124.48 Aligned_cols=75 Identities=9% Similarity=0.037 Sum_probs=69.4
Q ss_pred CeEeeeecCCcchhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcC--CceecCeeeEEEecCCCC
Q psy11609 1 MALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSH--EKHFFGCKIDVSPYHDVD 77 (83)
Q Consensus 1 ~~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~n--g~~~~g~~i~V~~a~g~~ 77 (83)
.+|||++|+++..+++|++.|++||+|++|+|+.+ +|||||+|.++++|++|++.++ |..|.|++|+|+.+...+
T Consensus 17 ~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~--kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A~~~~ 93 (105)
T 1sjq_A 17 RVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG--KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHKE 93 (105)
T ss_dssp CEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT--TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCCSSSS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcCCCC
Confidence 37999999999999999999999999999999985 8999999999999999999886 479999999999998544
No 32
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=2.2e-20 Score=115.15 Aligned_cols=76 Identities=22% Similarity=0.304 Sum_probs=71.1
Q ss_pred eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC-------CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecC
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG-------GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYH 74 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~-------~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~ 74 (83)
+|||++|+.+..+++|++.|++||+|.+|+|+.+. ++|||||.|.++++|++|+..|||..|.|++|.|..+.
T Consensus 7 ~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 86 (98)
T 2cpf_A 7 GLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVRISE 86 (98)
T ss_dssp CEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEECSS
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEcc
Confidence 79999999999999999999999999999999864 37899999999999999999999999999999999998
Q ss_pred CCC
Q psy11609 75 DVD 77 (83)
Q Consensus 75 g~~ 77 (83)
...
T Consensus 87 ~~~ 89 (98)
T 2cpf_A 87 RAT 89 (98)
T ss_dssp CSS
T ss_pred CCC
Confidence 543
No 33
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=1.9e-20 Score=116.03 Aligned_cols=76 Identities=18% Similarity=0.195 Sum_probs=71.8
Q ss_pred eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC---CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCCC
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG---GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDVD 77 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~---~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~~ 77 (83)
+|||++++.+..+++|++.|++||+|.+|+|+.+. ++|||||.|.++++|++|+..|||..+.|++|.|..+..+.
T Consensus 19 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 97 (100)
T 2do4_A 19 KLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAISNSGP 97 (100)
T ss_dssp CEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEECCCCS
T ss_pred EEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCCCC
Confidence 79999999999999999999999999999999976 47999999999999999999999999999999999998543
No 34
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.83 E-value=8.4e-21 Score=121.36 Aligned_cols=70 Identities=13% Similarity=0.050 Sum_probs=67.8
Q ss_pred eEeeeecCCcchhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEec
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPY 73 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a 73 (83)
-|||++|+.++.+++|++.|++||+|.++++.. ++|||||.|.+++||++|+++|||..++|++|.|..|
T Consensus 9 wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~--~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A 78 (89)
T 2wbr_A 9 WLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL--NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESP 78 (89)
T ss_dssp EEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET--TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred eEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC--CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEEC
Confidence 489999999999999999999999999999977 8999999999999999999999999999999999998
No 35
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=1.8e-20 Score=117.88 Aligned_cols=75 Identities=16% Similarity=0.282 Sum_probs=71.3
Q ss_pred eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC-CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCC
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG-GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDV 76 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~-~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~ 76 (83)
+|||++|+.+..+++|++.|++||+|.+|+|+.+. ++|||||.|.++++|++|++.|||..|.|++|.|+.+...
T Consensus 24 ~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~ 99 (109)
T 1x4a_A 24 RIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSG 99 (109)
T ss_dssp EEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCCCC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcccC
Confidence 79999999999999999999999999999998876 5899999999999999999999999999999999999854
No 36
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.83 E-value=2.4e-20 Score=118.04 Aligned_cols=75 Identities=20% Similarity=0.245 Sum_probs=71.2
Q ss_pred eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCC
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDV 76 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~ 76 (83)
||||+++..+..+++|++.|++||.|.+|+|+.+. ++|||||+|.++++|++|++.|||..|.|++|.|..+...
T Consensus 17 ~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 95 (115)
T 2dgo_A 17 HVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRK 95 (115)
T ss_dssp EEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEESSCC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEccCC
Confidence 79999999999999999999999999999999875 4899999999999999999999999999999999999844
No 37
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=1.1e-20 Score=117.21 Aligned_cols=76 Identities=21% Similarity=0.263 Sum_probs=71.8
Q ss_pred eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCCC
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDVD 77 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~~ 77 (83)
+|||++++.+..+++|++.|++||+|.+|+|+.+. ++|||||.|.++++|++|++.|||..|.|++|.|..+..+.
T Consensus 14 ~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~ 93 (102)
T 2cqb_A 14 VLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAKPMR 93 (102)
T ss_dssp CEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEECCCCC
T ss_pred EEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeCCCCC
Confidence 79999999999999999999999999999999874 58999999999999999999999999999999999998554
No 38
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=1.6e-20 Score=119.31 Aligned_cols=75 Identities=24% Similarity=0.272 Sum_probs=71.4
Q ss_pred eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC--CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCC
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG--GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDV 76 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~--~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~ 76 (83)
+|||++++.+..+++|++.|++||+|.+|+++.+. ++|||||.|.++++|++|+..|||..|.|++|.|+.+...
T Consensus 31 ~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 107 (109)
T 2err_A 31 RLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATAR 107 (109)
T ss_dssp EEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEECCCS
T ss_pred EEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCC
Confidence 79999999999999999999999999999999875 5899999999999999999999999999999999999754
No 39
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.83 E-value=1.4e-20 Score=116.68 Aligned_cols=73 Identities=19% Similarity=0.202 Sum_probs=69.6
Q ss_pred eEeeeecCCcchhhHHHHHhccCCceeE--------EEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeE
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGKVSW--------VKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKID 69 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~Its--------v~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~ 69 (83)
+|||++++.+..+++|++.|++||.|.+ |+|+.+. ++|||||.|.++++|++|++.|||..+.|++|.
T Consensus 15 ~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~ 94 (99)
T 2la6_A 15 TIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNPIK 94 (99)
T ss_dssp EEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSSSSBCE
T ss_pred EEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCcEEE
Confidence 7999999999999999999999999999 9999875 489999999999999999999999999999999
Q ss_pred EEecC
Q psy11609 70 VSPYH 74 (83)
Q Consensus 70 V~~a~ 74 (83)
|+.|+
T Consensus 95 V~~A~ 99 (99)
T 2la6_A 95 VSFAT 99 (99)
T ss_dssp EEECC
T ss_pred EEecC
Confidence 99874
No 40
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=1.4e-20 Score=117.21 Aligned_cols=77 Identities=18% Similarity=0.230 Sum_probs=72.4
Q ss_pred eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCCC
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDVD 77 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~~ 77 (83)
+|||++++.+..+++|++.|++||+|.+|+|+.+. ++|||||.|.++++|++|+..|||..|.|++|.|..+..+.
T Consensus 17 ~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 96 (105)
T 1x5u_A 17 TVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNKASAHN 96 (105)
T ss_dssp EEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEETTTTS
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCCC
Confidence 79999999999999999999999999999999976 58899999999999999999999999999999999998654
Q ss_pred c
Q psy11609 78 F 78 (83)
Q Consensus 78 ~ 78 (83)
.
T Consensus 97 ~ 97 (105)
T 1x5u_A 97 K 97 (105)
T ss_dssp C
T ss_pred c
Confidence 3
No 41
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=8.4e-21 Score=120.91 Aligned_cols=72 Identities=11% Similarity=0.090 Sum_probs=68.7
Q ss_pred eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC---CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecC
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG---GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYH 74 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~---~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~ 74 (83)
||||++++.++.+++|++.|++||+|.+|.|+.+. ++|||||+|.++++|++|+. +||..|.|++|.|..++
T Consensus 13 ~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~~ 87 (103)
T 1s79_A 13 SVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFKD 87 (103)
T ss_dssp CEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEHH
T ss_pred EEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEch
Confidence 79999999999999999999999999999999976 69999999999999999998 99999999999998765
No 42
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=8.7e-21 Score=117.69 Aligned_cols=76 Identities=25% Similarity=0.363 Sum_probs=72.0
Q ss_pred eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCCC
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDVD 77 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~~ 77 (83)
+|||++|+.+..+++|++.|++||+|.+|+|+.+. ++|||||.|.++++|++|++.|||..|.|++|.|+.+..+.
T Consensus 14 ~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 93 (102)
T 1x5s_A 14 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAGKSS 93 (102)
T ss_dssp EEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEEECCC
T ss_pred EEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCC
Confidence 79999999999999999999999999999999975 58899999999999999999999999999999999998554
No 43
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.83 E-value=1.8e-20 Score=114.12 Aligned_cols=77 Identities=19% Similarity=0.208 Sum_probs=72.3
Q ss_pred eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC--CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCCCc
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG--GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDVDF 78 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~--~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~~~ 78 (83)
+|||++++.+..+++|++.|++||+|.+|+|+.+. ++|||||.|.++++|++|+..|||..+.|++|.|..+..+..
T Consensus 10 ~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~~ 88 (92)
T 2dgv_A 10 QIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDRNASG 88 (92)
T ss_dssp EEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECSCCSS
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCCCC
Confidence 79999999999999999999999999999999865 589999999999999999999999999999999999986543
No 44
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=4.2e-20 Score=116.72 Aligned_cols=74 Identities=15% Similarity=0.185 Sum_probs=70.3
Q ss_pred CeEeeeecCCcchhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCceecC-----eeeEEEecCC
Q psy11609 1 MALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFG-----CKIDVSPYHD 75 (83)
Q Consensus 1 ~~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~g-----~~i~V~~a~g 75 (83)
.+|||++|+.+..+++|++.|++||+|.+|+|+.+ |||||+|.++++|++|++.|||..|.| ++|.|+.++.
T Consensus 16 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~---g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~~a~~ 92 (108)
T 1x4c_A 16 NRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD---GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDGP 92 (108)
T ss_dssp CEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT---TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEEESSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC---CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEEeCCC
Confidence 37999999999999999999999999999999987 999999999999999999999999999 9999999985
Q ss_pred CC
Q psy11609 76 VD 77 (83)
Q Consensus 76 ~~ 77 (83)
..
T Consensus 93 ~~ 94 (108)
T 1x4c_A 93 RS 94 (108)
T ss_dssp CS
T ss_pred CC
Confidence 43
No 45
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=3.6e-20 Score=114.59 Aligned_cols=75 Identities=21% Similarity=0.349 Sum_probs=70.8
Q ss_pred eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCCC
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDVD 77 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~~ 77 (83)
+|||++++.+..+++|++.|++||+|.+|+|+.+. ++|||||.|.++++|++|++ |||..|.|++|.|..+..+.
T Consensus 12 ~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~a~~~~ 90 (99)
T 2dgs_A 12 KIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKRAEPRD 90 (99)
T ss_dssp EEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEECCCCC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEECCCCc
Confidence 79999999999999999999999999999999875 58999999999999999998 99999999999999998544
No 46
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.83 E-value=2.7e-20 Score=116.34 Aligned_cols=73 Identities=12% Similarity=0.082 Sum_probs=69.8
Q ss_pred eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC---CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecC
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG---GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYH 74 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~---~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~ 74 (83)
+|||++++.+..+++|++.|++||+|.+|+|+.+. ++|||||+|.++++|++|+..|||..|.|++|.|+++.
T Consensus 31 ~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 106 (107)
T 3ulh_A 31 KLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVT 106 (107)
T ss_dssp EEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEeC
Confidence 79999999999999999999999999999999875 58999999999999999999999999999999999875
No 47
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.83 E-value=2.2e-20 Score=118.51 Aligned_cols=76 Identities=18% Similarity=0.245 Sum_probs=71.6
Q ss_pred eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCCC
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDVD 77 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~~ 77 (83)
+|||++|+.+..+++|++.|++||+|.+|+|+.+. ++|||||.|.++++|++|++.|||..|.|++|.|+.+....
T Consensus 27 ~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 106 (115)
T 2cpz_A 27 NLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRSKN 106 (115)
T ss_dssp CEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECCCCSC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEcCCCC
Confidence 79999999999999999999999999999999876 47899999999999999999999999999999999997543
No 48
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.83 E-value=2.7e-20 Score=118.27 Aligned_cols=73 Identities=22% Similarity=0.288 Sum_probs=69.0
Q ss_pred eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecC
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYH 74 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~ 74 (83)
||||++++.+..+++|++.|++||+|.+|+|+.+. ++|||||+|.++++|++|++.|||..|.|++|+|+.+.
T Consensus 42 ~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ak 118 (118)
T 2khc_A 42 NLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQLKK 118 (118)
T ss_dssp EEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEEC-
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecC
Confidence 79999999999999999999999999999999874 58999999999999999999999999999999999873
No 49
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.83 E-value=2.5e-20 Score=116.16 Aligned_cols=76 Identities=13% Similarity=0.207 Sum_probs=71.6
Q ss_pred eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC---CceEEEEEeCCchHHHHHHhhcCCceecC---eeeEEEecCC
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG---GDRYGLVCFKKADDAEKAILGSHEKHFFG---CKIDVSPYHD 75 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~---~~g~afV~F~~pEdA~~A~~~~ng~~~~g---~~i~V~~a~g 75 (83)
+|||++|+.+..+++|++.|++||+|.+|+|+.+. ++|||||.|.++++|++|++.|||..+.| ++|.|..++.
T Consensus 17 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~~a~~ 96 (105)
T 2dnh_A 17 KLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFADT 96 (105)
T ss_dssp EEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEEESCS
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEEECcc
Confidence 79999999999999999999999999999999986 48999999999999999999999999998 9999999985
Q ss_pred CC
Q psy11609 76 VD 77 (83)
Q Consensus 76 ~~ 77 (83)
..
T Consensus 97 ~~ 98 (105)
T 2dnh_A 97 DK 98 (105)
T ss_dssp SC
T ss_pred Cc
Confidence 43
No 50
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=1.1e-20 Score=116.53 Aligned_cols=76 Identities=11% Similarity=0.062 Sum_probs=71.5
Q ss_pred eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCCC
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDVD 77 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~~ 77 (83)
+|||++|+.+..+++|++.|++||+|.+++++.+. ++|||||.|.++++|++|++.|||..|.|++|.|+.+.++.
T Consensus 17 ~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~~ 96 (98)
T 2cqp_A 17 IIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLGSGPS 96 (98)
T ss_dssp EEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEESSCSS
T ss_pred EEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEcCCCC
Confidence 79999999999999999999999999988888764 48999999999999999999999999999999999998765
No 51
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.83 E-value=2.9e-20 Score=119.61 Aligned_cols=77 Identities=25% Similarity=0.345 Sum_probs=72.7
Q ss_pred eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC---CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCCCc
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG---GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDVDF 78 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~---~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~~~ 78 (83)
||||++++.+..+++|++.|++||+|.+|+|+.+. ++|||||.|.++++|++|+..|||..|.|++|.|+.++.+..
T Consensus 9 ~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 88 (116)
T 2fy1_A 9 KLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAKKPSF 88 (116)
T ss_dssp EEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECCCSSC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCCCCC
Confidence 79999999999999999999999999999999976 689999999999999999999999999999999999986543
No 52
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=1.7e-20 Score=116.77 Aligned_cols=75 Identities=20% Similarity=0.183 Sum_probs=71.2
Q ss_pred eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCC
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDV 76 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~ 76 (83)
||||++|+.+..+++|++.|++||+|.+|+|+.+. ++|||||.|.++++|++|+..|||..|.|++|.|..+...
T Consensus 15 ~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~ 93 (103)
T 2dnm_A 15 TLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVARYG 93 (103)
T ss_dssp EEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEECSSC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEECCcC
Confidence 79999999999999999999999999999999875 4899999999999999999999999999999999999843
No 53
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=1.8e-20 Score=116.39 Aligned_cols=76 Identities=14% Similarity=0.259 Sum_probs=71.9
Q ss_pred eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCCC
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDVD 77 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~~ 77 (83)
||||++++.+..+++|++.|++||+|.+|+++.+. ++|||||.|.++++|++|++.|||..+.|++|.|..+....
T Consensus 10 ~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 89 (104)
T 1p1t_A 10 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAASEK 89 (104)
T ss_dssp CEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETTCTT
T ss_pred EEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCCCcc
Confidence 79999999999999999999999999999999875 48999999999999999999999999999999999998654
No 54
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=1.2e-20 Score=116.89 Aligned_cols=75 Identities=12% Similarity=0.170 Sum_probs=71.1
Q ss_pred CeEeeeecCCcchhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCC
Q psy11609 1 MALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDV 76 (83)
Q Consensus 1 ~~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~ 76 (83)
.+|||++|+.+..+++|++.|++||+|. +.++.+.++|||||.|.++++|++|+..|||..|.|++|.|+.+..+
T Consensus 20 ~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 94 (97)
T 2e5j_A 20 ADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQQ 94 (97)
T ss_dssp CEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCCC
T ss_pred CEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCC
Confidence 3899999999999999999999999998 88888889999999999999999999999999999999999999864
No 55
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.82 E-value=2.5e-20 Score=117.96 Aligned_cols=74 Identities=15% Similarity=0.156 Sum_probs=71.0
Q ss_pred eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC-CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCC
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG-GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHD 75 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~-~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g 75 (83)
||||++++.+..+++|++.|++||.|.+|.++.++ ++|||||.|.++++|.+|+..|||..+.|++|.|..++.
T Consensus 10 ~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 84 (115)
T 3lqv_A 10 ILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYNA 84 (115)
T ss_dssp EEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECCH
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecC
Confidence 79999999999999999999999999999999876 689999999999999999999999999999999999974
No 56
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=3.2e-20 Score=115.81 Aligned_cols=74 Identities=18% Similarity=0.288 Sum_probs=70.4
Q ss_pred eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCC
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHD 75 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g 75 (83)
||||++++.+..+++|++.|++||+|.+|+|+.+. ++|||||.|.++++|++|+..|||..|.|++|.|..|..
T Consensus 25 ~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 102 (106)
T 1p27_B 25 ILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCFV 102 (106)
T ss_dssp EEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEESEE
T ss_pred EEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEeecC
Confidence 69999999999999999999999999999999875 389999999999999999999999999999999999873
No 57
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=1.3e-20 Score=121.12 Aligned_cols=74 Identities=16% Similarity=0.152 Sum_probs=68.2
Q ss_pred CeEeeeecCC-cchhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCc--eecCeeeEEEecCCC
Q psy11609 1 MALFIYVVSD-TSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEK--HFFGCKIDVSPYHDV 76 (83)
Q Consensus 1 ~~lfv~k~~d-~~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~--~~~g~~i~V~~a~g~ 76 (83)
.+|||++|+. +..+++|++.|++||+|++|+|+.+ +|||||+|.++++|++|++.|||. .|.|++|+|+.|+..
T Consensus 16 ~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~--kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~~ 92 (102)
T 1x4d_A 16 RVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK--INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQKY 92 (102)
T ss_dssp CEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS--SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEECCC
T ss_pred CEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC--CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEECCCC
Confidence 3799999999 9999999999999999999999874 689999999999999999998864 699999999999853
No 58
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=5.7e-20 Score=117.37 Aligned_cols=74 Identities=11% Similarity=0.048 Sum_probs=68.9
Q ss_pred eEeeeecCCcchhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhc--CCceecCeeeEEEecCCCC
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGS--HEKHFFGCKIDVSPYHDVD 77 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~--ng~~~~g~~i~V~~a~g~~ 77 (83)
+|||++|+.+..+++|++.|++||+|.+|.|+.+ +|||||+|.++++|++|++.+ ++..+.|++|+|+.+...+
T Consensus 17 ~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~--kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~~~ 92 (101)
T 2cq1_A 17 VLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG--KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSNHKE 92 (101)
T ss_dssp EEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT--TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEECSCSS
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC--CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEcCccc
Confidence 7999999999999999999999999999999875 899999999999999999976 5789999999999998544
No 59
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.82 E-value=1.9e-20 Score=123.69 Aligned_cols=75 Identities=16% Similarity=0.283 Sum_probs=71.8
Q ss_pred eEeeeecCCcchhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCCC
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDVD 77 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~~ 77 (83)
+|||++++.+..+++|++.|++||+|.+|+|+.+ ++|||||.|.++++|++|+..|||..|.|++|.|+.+..+.
T Consensus 75 ~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 149 (150)
T 2i2y_A 75 KVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGEK 149 (150)
T ss_dssp EEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS-SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCCC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC-CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCCC
Confidence 7999999999999999999999999999999987 79999999999999999999999999999999999998653
No 60
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=8.2e-20 Score=115.20 Aligned_cols=74 Identities=18% Similarity=0.171 Sum_probs=70.6
Q ss_pred eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC---CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCC
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG---GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHD 75 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~---~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g 75 (83)
||||++|+.+..+++|++.|++||+|.+|+|+.+. ++|||||.|.++++|++|+..|||..|.|++|.|..+..
T Consensus 17 ~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 93 (114)
T 2do0_A 17 TVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMDER 93 (114)
T ss_dssp CEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEccc
Confidence 79999999999999999999999999999999876 489999999999999999999999999999999999874
No 61
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=3.9e-20 Score=115.33 Aligned_cols=76 Identities=16% Similarity=0.269 Sum_probs=71.4
Q ss_pred eEeeeecCCcchhhHHHHHhccCCceeEEEEecc-C----CceEEEEEeCCchHHHHHHhhc-CCceecCeeeEEEecCC
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQ-G----GDRYGLVCFKKADDAEKAILGS-HEKHFFGCKIDVSPYHD 75 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d-~----~~g~afV~F~~pEdA~~A~~~~-ng~~~~g~~i~V~~a~g 75 (83)
+|||++++.+..+++|++.|++||+|.+|+|+.+ . ++|||||.|.++++|++|+..| ||..|.|++|.|..+..
T Consensus 17 ~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v~~a~~ 96 (107)
T 2cph_A 17 KILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVLEWADS 96 (107)
T ss_dssp CEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEEEECCC
T ss_pred EEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEEEeCCC
Confidence 7999999999999999999999999999999988 2 5899999999999999999999 99999999999999985
Q ss_pred CC
Q psy11609 76 VD 77 (83)
Q Consensus 76 ~~ 77 (83)
.+
T Consensus 97 ~~ 98 (107)
T 2cph_A 97 EV 98 (107)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 62
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.82 E-value=2.2e-20 Score=123.59 Aligned_cols=76 Identities=11% Similarity=0.092 Sum_probs=69.2
Q ss_pred eEeeeecCCcchhhHHH----HHhccCCceeEEEEeccC-CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCC
Q psy11609 2 ALFIYVVSDTSLKDGLY----HEYKKHGKVSWVKIIGQG-GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDV 76 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~----~eF~kfG~Itsv~V~~d~-~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~ 76 (83)
||||++|+.+..+++|+ +.|++||+|.+|.++.+. ++|||||.|.++++|++|+..|||..|.|++|.|..|...
T Consensus 31 ~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~~a~~~ 110 (127)
T 2a3j_A 31 VVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVITFSETP 110 (127)
T ss_dssp EEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEEECCCC
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEEEccCc
Confidence 79999999988887765 689999999999998764 7999999999999999999999999999999999999864
Q ss_pred C
Q psy11609 77 D 77 (83)
Q Consensus 77 ~ 77 (83)
.
T Consensus 111 ~ 111 (127)
T 2a3j_A 111 Q 111 (127)
T ss_dssp C
T ss_pred c
Confidence 3
No 63
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.82 E-value=3.3e-20 Score=116.64 Aligned_cols=74 Identities=16% Similarity=0.239 Sum_probs=70.3
Q ss_pred eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCC
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHD 75 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g 75 (83)
||||++++.+..+++|++.|++||+|.+|+|+.+. ++|||||.|.++++|++|+..|||..|.|++|.|..+..
T Consensus 28 ~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 105 (110)
T 1oo0_B 28 ILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFV 105 (110)
T ss_dssp EEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEE
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEccc
Confidence 79999999999999999999999999999999875 489999999999999999999999999999999999873
No 64
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.82 E-value=3.6e-20 Score=119.57 Aligned_cols=74 Identities=19% Similarity=0.207 Sum_probs=69.2
Q ss_pred eEeeeecCCcchhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCce--ecCeeeEEEecCCCC
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKH--FFGCKIDVSPYHDVD 77 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~--~~g~~i~V~~a~g~~ 77 (83)
+|||++|+++..+++|+..|++||+|++|++++ ++|||||+|.++++|++|++.|||.. +.|++|+|+.++..+
T Consensus 23 ~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~--~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S~~k~ 98 (100)
T 3r27_A 23 VVHIRGLIDGVVEADLVEALQEFGPISYVVVMP--KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYSTSQK 98 (100)
T ss_dssp EEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET--TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEECSCSC
T ss_pred EEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc--CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEeccccc
Confidence 799999999999999999999999999999986 68999999999999999999999874 789999999998654
No 65
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=2.3e-20 Score=110.25 Aligned_cols=72 Identities=19% Similarity=0.279 Sum_probs=68.5
Q ss_pred eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecC
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYH 74 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~ 74 (83)
||||++++.+..+++|++.|++||+|.+|.++.+. ++|||||.|.++++|++|+..+| ..+.|++|.|..|.
T Consensus 2 ~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a~ 77 (77)
T 1uaw_A 2 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVAF 77 (77)
T ss_dssp CEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEECC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEecC
Confidence 79999999999999999999999999999999875 48999999999999999999999 99999999999874
No 66
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=4.6e-20 Score=113.96 Aligned_cols=74 Identities=12% Similarity=0.169 Sum_probs=69.9
Q ss_pred eEeeeecCCcchhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCceec--CeeeEEEecCCCC
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFF--GCKIDVSPYHDVD 77 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~--g~~i~V~~a~g~~ 77 (83)
+|||++++.+..+++|++.|++||+|.+|+++.+ +|||||.|.++++|++|++.|||..+. |++|.|+.+..+.
T Consensus 19 ~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~--~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a~~~~ 94 (97)
T 1why_A 19 RLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG--DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAKSGP 94 (97)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS--SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEECCCCC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC--CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEECCCCC
Confidence 7999999999999999999999999999999875 889999999999999999999999999 9999999998543
No 67
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=5.7e-20 Score=113.91 Aligned_cols=74 Identities=18% Similarity=0.174 Sum_probs=70.2
Q ss_pred eEeeeecCCcchhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCCC
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDVD 77 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~~ 77 (83)
+|||++++.+..+++|++.|++||+|.+|+++. ++|||||.|.++++|++|++.|||..|.|++|.|..+..+.
T Consensus 17 ~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~--~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~ 90 (99)
T 2cpj_A 17 RLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHK--DKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHSA 90 (99)
T ss_dssp EEEEESCCTTCCHHHHHHHTSTTCCCSEEEEET--TTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSCCS
T ss_pred EEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEec--CCCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCCCC
Confidence 799999999999999999999999999999986 48999999999999999999999999999999999998544
No 68
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.82 E-value=4.8e-20 Score=117.32 Aligned_cols=75 Identities=16% Similarity=0.283 Sum_probs=71.0
Q ss_pred eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCC
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDV 76 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~ 76 (83)
+|||++++.+..+++|++.|++||+|.+|+|+.+. ++|||||.|.++++|++|++.+||..|.|++|.|..+...
T Consensus 28 ~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~k 106 (108)
T 2jrs_A 28 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTER 106 (108)
T ss_dssp EEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEECSCSS
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEcccC
Confidence 79999999999999999999999999999999875 4899999999999999999999999999999999998753
No 69
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=3.8e-20 Score=114.23 Aligned_cols=75 Identities=19% Similarity=0.178 Sum_probs=70.9
Q ss_pred eEeeeecCCcchhhHHHHHhccCCcee-EEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCee----eEEEe
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGKVS-WVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCK----IDVSP 72 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~It-sv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~----i~V~~ 72 (83)
+|||++++.+..+++|++.|++||+|. +|+|+.+. ++|||||.|.++++|++|++.|||..+.|++ |.|+.
T Consensus 11 ~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l~v~~ 90 (99)
T 2div_A 11 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNY 90 (99)
T ss_dssp EEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEECCEEE
T ss_pred EEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeEEEee
Confidence 899999999999999999999999999 99999885 4799999999999999999999999999999 99999
Q ss_pred cCCC
Q psy11609 73 YHDV 76 (83)
Q Consensus 73 a~g~ 76 (83)
|...
T Consensus 91 a~~~ 94 (99)
T 2div_A 91 ATYS 94 (99)
T ss_dssp TTCC
T ss_pred cCCC
Confidence 9843
No 70
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=1.8e-20 Score=123.46 Aligned_cols=74 Identities=12% Similarity=0.190 Sum_probs=68.3
Q ss_pred eEee--eecCCcchhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCcee-----cCeeeEEEecC
Q psy11609 2 ALFI--YVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHF-----FGCKIDVSPYH 74 (83)
Q Consensus 2 ~lfv--~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~-----~g~~i~V~~a~ 74 (83)
+||| ++|+.++.+++|++.|++||+|.+|+|+. ++|||||+|.+++||++|+++|||+.+ .|++|+|..++
T Consensus 27 ~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~--~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~v~~a~ 104 (114)
T 2cq2_A 27 SLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP--NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLNFVE 104 (114)
T ss_dssp EEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT--TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEEEES
T ss_pred EEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC--CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEEEEecc
Confidence 6999 88999999999999999999999998865 589999999999999999999999998 79999999998
Q ss_pred CCC
Q psy11609 75 DVD 77 (83)
Q Consensus 75 g~~ 77 (83)
..+
T Consensus 105 ~~p 107 (114)
T 2cq2_A 105 KVQ 107 (114)
T ss_dssp CCC
T ss_pred cCc
Confidence 543
No 71
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=7.3e-20 Score=110.05 Aligned_cols=71 Identities=17% Similarity=0.256 Sum_probs=67.9
Q ss_pred eEeeeecCCcchhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhc-CCceecCeeeEEEecC
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGS-HEKHFFGCKIDVSPYH 74 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~-ng~~~~g~~i~V~~a~ 74 (83)
+|||++++.+..+++|++.|++||+|.+|+++. ++|||||.|.++++|++|+..| ||..+.|++|.|+.|.
T Consensus 14 ~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~--~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ak 85 (85)
T 2ytc_A 14 TLYVGGLGDTITETDLRNHFYQFGEIRTITVVQ--RQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWGR 85 (85)
T ss_dssp CEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEG--GGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEECC
T ss_pred EEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEEC--CCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEecC
Confidence 799999999999999999999999999999997 5899999999999999999999 9999999999999874
No 72
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.82 E-value=2.7e-20 Score=114.32 Aligned_cols=75 Identities=15% Similarity=0.195 Sum_probs=70.4
Q ss_pred eEeeeecCCcchhhHHH----HHhccCCceeEEEEeccC-CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCC
Q psy11609 2 ALFIYVVSDTSLKDGLY----HEYKKHGKVSWVKIIGQG-GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDV 76 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~----~eF~kfG~Itsv~V~~d~-~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~ 76 (83)
+|||++++.+..+++|+ +.|++||+|.+|+++..+ ++|||||.|.++++|++|+..|||..+.|++|.|..+..+
T Consensus 10 ~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 89 (97)
T 1nu4_A 10 TIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYAKTD 89 (97)
T ss_dssp EEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSSC
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEEEEccCC
Confidence 79999999999999999 999999999999998654 6899999999999999999999999999999999999854
No 73
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=7.5e-20 Score=111.67 Aligned_cols=72 Identities=26% Similarity=0.392 Sum_probs=68.6
Q ss_pred eEeeeecCCcchhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCCC
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDVD 77 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~~ 77 (83)
||||++++.+..+++|++.|++||+|.+|+++ +|||||.|.++++|++|++.|||..+.|++|.|+.+..+.
T Consensus 10 ~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 81 (90)
T 2dnq_A 10 KLFIGNLPREATEQEIRSLFEQYGKVLECDII----KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKNKS 81 (90)
T ss_dssp EEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE----TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSCCC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE----CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCCCC
Confidence 79999999999999999999999999999998 6899999999999999999999999999999999998543
No 74
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=5e-20 Score=115.47 Aligned_cols=75 Identities=16% Similarity=0.236 Sum_probs=71.2
Q ss_pred eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcC------CceecCeeeEEE
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSH------EKHFFGCKIDVS 71 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~n------g~~~~g~~i~V~ 71 (83)
+|||++|+.+..+++|++.|++||+|.+|+|+.+. ++|||||.|.++++|++|+..|| |..|.|++|.|.
T Consensus 17 ~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~~l~v~ 96 (111)
T 1x4h_A 17 TVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQLKVD 96 (111)
T ss_dssp CEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCEEEEE
T ss_pred EEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCEEEEEE
Confidence 79999999999999999999999999999999874 58999999999999999999999 999999999999
Q ss_pred ecCCC
Q psy11609 72 PYHDV 76 (83)
Q Consensus 72 ~a~g~ 76 (83)
.+...
T Consensus 97 ~a~~~ 101 (111)
T 1x4h_A 97 LAVTR 101 (111)
T ss_dssp CCCCC
T ss_pred ECCCC
Confidence 99844
No 75
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.82 E-value=2.6e-20 Score=116.19 Aligned_cols=76 Identities=18% Similarity=0.249 Sum_probs=71.3
Q ss_pred eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCcee---cCeeeEEEecC
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHF---FGCKIDVSPYH 74 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~---~g~~i~V~~a~ 74 (83)
+|||++++.+..+++|++.|++||+|.+|+|+.+. ++|||||.|.++++|++|+..|||..+ .|++|.|..+.
T Consensus 15 ~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~ 94 (106)
T 2dgp_A 15 KLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPAD 94 (106)
T ss_dssp EEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEEEECC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEEEEECC
Confidence 79999999999999999999999999999999975 589999999999999999999999988 89999999998
Q ss_pred CCC
Q psy11609 75 DVD 77 (83)
Q Consensus 75 g~~ 77 (83)
...
T Consensus 95 ~~~ 97 (106)
T 2dgp_A 95 SES 97 (106)
T ss_dssp CCS
T ss_pred ccc
Confidence 543
No 76
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.82 E-value=2.1e-20 Score=114.43 Aligned_cols=73 Identities=12% Similarity=0.096 Sum_probs=69.1
Q ss_pred eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecC
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYH 74 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~ 74 (83)
+|||++++.+..+++|++.|++||+|.+++++.+. ++|||||.|.++++|++|++.|||..|.|++|.|+.+.
T Consensus 17 ~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~ 93 (95)
T 2ek1_A 17 VIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPS 93 (95)
T ss_dssp EEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEecc
Confidence 79999999999999999999999999999998865 47999999999999999999999999999999999875
No 77
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=2.4e-20 Score=119.16 Aligned_cols=72 Identities=14% Similarity=0.135 Sum_probs=68.7
Q ss_pred eEeeeecCCcchhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCC
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHD 75 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g 75 (83)
+|||++|+.+..+++|++.|++||+|.+|.|+. ++|||||.|.++++|++|++.|||..|.|++|+|+.+..
T Consensus 12 ~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~--~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 83 (111)
T 1whx_A 12 VILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE--GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPI 83 (111)
T ss_dssp EEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS--SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEET
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC--CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 799999999999999999999999999999875 789999999999999999999999999999999998864
No 78
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.81 E-value=2.1e-20 Score=110.39 Aligned_cols=71 Identities=18% Similarity=0.239 Sum_probs=66.9
Q ss_pred eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEec
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPY 73 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a 73 (83)
+|||++++.+..+++|++.|++||+|.+|+++.+. ++|||||.|.++++|++|++ |||..+.|++|.|..|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 58999999999999999999999999999999875 58999999999999999997 9999999999999865
No 79
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.81 E-value=1e-19 Score=113.65 Aligned_cols=71 Identities=20% Similarity=0.330 Sum_probs=67.8
Q ss_pred eEeeeecCC-cchhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCC
Q psy11609 2 ALFIYVVSD-TSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDV 76 (83)
Q Consensus 2 ~lfv~k~~d-~~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~ 76 (83)
+|||++++. +..+++|++.|++||.|.+|++ ++|||||.|.++++|++|+..|||..+.|++|.|+.+...
T Consensus 24 ~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 95 (97)
T 2xnq_A 24 RLFIGNLPLKNVSKEDLFRIFSPYGHIMQINI----KNAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVSSSN 95 (97)
T ss_dssp EEEEESCCSSCCCHHHHHHHHGGGSCEEEEEE----CSSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEECCCC
T ss_pred EEEEeCCCcccCCHHHHHHHHHhcCCEEEEEE----eCCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecCCC
Confidence 799999998 9999999999999999999999 4899999999999999999999999999999999999864
No 80
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.81 E-value=1.7e-20 Score=114.16 Aligned_cols=75 Identities=19% Similarity=0.295 Sum_probs=68.5
Q ss_pred eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCCC
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDVD 77 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~~ 77 (83)
+|||++++.+..+++|++.|++||+|.+|+|+.+. ++|||||.|.+++ |.+|+..|||..+.|++|.|..|..+.
T Consensus 3 ~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~~ 81 (90)
T 2ki2_A 3 NIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPKK 81 (90)
T ss_dssp EEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC----
T ss_pred EEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCCC
Confidence 79999999999999999999999999999999875 5899999999999 999999999999999999999998543
No 81
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.81 E-value=6.1e-20 Score=124.38 Aligned_cols=74 Identities=20% Similarity=0.189 Sum_probs=70.7
Q ss_pred eEeeeecCCcchhhHHHHHhccCC--ceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCC
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHG--KVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHD 75 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG--~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g 75 (83)
+|||++|+.++.+++|++.|++|| +|.+|+|+.|. ++|||||+|.++++|++|+..|||..|.|++|.|..+..
T Consensus 57 ~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~a~~ 136 (156)
T 3n9u_C 57 AVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRPATR 136 (156)
T ss_dssp EEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEECCH
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEEcCC
Confidence 799999999999999999999999 99999999885 589999999999999999999999999999999999864
No 82
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.81 E-value=1.8e-19 Score=108.98 Aligned_cols=71 Identities=25% Similarity=0.290 Sum_probs=66.3
Q ss_pred eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEec
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPY 73 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a 73 (83)
+|||++++.+..+++|++.|++||+|.+|+++.+. ++|||||+|.++++|++|+. ++|..|.|++|.|..|
T Consensus 13 ~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~~A 87 (87)
T 3s7r_A 13 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPKKA 87 (87)
T ss_dssp EEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEEEC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEEeC
Confidence 79999999999999999999999999999999875 48999999999999999995 5888999999999875
No 83
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=8.6e-20 Score=115.57 Aligned_cols=72 Identities=22% Similarity=0.260 Sum_probs=68.8
Q ss_pred eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecC
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYH 74 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~ 74 (83)
||||++++.+..+++|++.|++||+|.+|+|+.+. ++|||||.|.++++|++|+ .|||..|.|++|.|..+.
T Consensus 27 ~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 102 (114)
T 2cq4_A 27 TVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQ 102 (114)
T ss_dssp EEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHH
T ss_pred EEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecC
Confidence 79999999999999999999999999999999865 5899999999999999999 999999999999999876
No 84
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.81 E-value=1.4e-19 Score=115.85 Aligned_cols=73 Identities=19% Similarity=0.338 Sum_probs=69.6
Q ss_pred eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCC
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHD 75 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g 75 (83)
||||++++.+..+++|++.|++||+|.+|+|+.+. ++|||||.|.++++|++|+ +|||..|.|++|.|..+..
T Consensus 38 ~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~ 114 (124)
T 2jwn_A 38 SVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKRT 114 (124)
T ss_dssp EEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESSC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCC
Confidence 79999999999999999999999999999999874 5899999999999999999 8999999999999999974
No 85
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=4.5e-20 Score=121.92 Aligned_cols=74 Identities=9% Similarity=0.046 Sum_probs=69.3
Q ss_pred eEeeeecCCcchhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCC--ceecCeeeEEEecCCCC
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHE--KHFFGCKIDVSPYHDVD 77 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng--~~~~g~~i~V~~a~g~~ 77 (83)
+|||++|+.+..+++|++.|++||+|++|+|+.+ +|||||+|.++++|++|+..+|+ ..|.|++|+|+.++..+
T Consensus 33 ~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~--kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~k~ 108 (119)
T 2ad9_A 33 VIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG--KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHKE 108 (119)
T ss_dssp EEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG--GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEECSSSS
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC--CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEccCCC
Confidence 7999999999999999999999999999999986 89999999999999999999885 68999999999998544
No 86
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.81 E-value=1.3e-19 Score=112.96 Aligned_cols=74 Identities=9% Similarity=0.122 Sum_probs=69.5
Q ss_pred eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCCC
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDVD 77 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~~ 77 (83)
+|||++|+.+..+++|++.|++|| |.+|+|+.+. ++|||||.|.++++|++|+ .|||..|.|++|.|..+....
T Consensus 17 ~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~~~ 94 (103)
T 2dng_A 17 TAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDIAEGRK 94 (103)
T ss_dssp EEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEECCCCC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEEecCCC
Confidence 799999999999999999999998 9999999886 4899999999999999999 999999999999999998543
No 87
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=7.2e-20 Score=115.36 Aligned_cols=74 Identities=11% Similarity=0.202 Sum_probs=70.4
Q ss_pred CeEeeeecCCcchhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCC
Q psy11609 1 MALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDV 76 (83)
Q Consensus 1 ~~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~ 76 (83)
.||||++++.+..+++|++.|++||+|.+|+++.+ +|||||.|.++++|++|+..|||..|.|++|.|..+...
T Consensus 26 ~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 99 (109)
T 1x4g_A 26 CTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE--KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKES 99 (109)
T ss_dssp CEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT--TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCCC
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC--CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCCC
Confidence 38999999999999999999999999999999986 899999999999999999999999999999999999843
No 88
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.81 E-value=6.7e-20 Score=118.42 Aligned_cols=72 Identities=22% Similarity=0.272 Sum_probs=68.3
Q ss_pred eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEec
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPY 73 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a 73 (83)
+|||++++.+..+++|++.|++||+|.+|+|+.+. ++|||||.|.++++|++|++.|||..|.|++|.|+.|
T Consensus 65 ~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~A 140 (140)
T 2ku7_A 65 VLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 140 (140)
T ss_dssp EEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC-
T ss_pred EEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEeC
Confidence 79999999999999999999999999999999874 5899999999999999999999999999999999875
No 89
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=4.1e-20 Score=114.99 Aligned_cols=76 Identities=16% Similarity=0.140 Sum_probs=71.4
Q ss_pred CeEeeeecCCcchhhHHHHHhcc-CCceeEEEEeccC---CceEEEEEeCCchHHHHHHhhcCCce-ecCeeeEEEecCC
Q psy11609 1 MALFIYVVSDTSLKDGLYHEYKK-HGKVSWVKIIGQG---GDRYGLVCFKKADDAEKAILGSHEKH-FFGCKIDVSPYHD 75 (83)
Q Consensus 1 ~~lfv~k~~d~~~~d~L~~eF~k-fG~Itsv~V~~d~---~~g~afV~F~~pEdA~~A~~~~ng~~-~~g~~i~V~~a~g 75 (83)
.+|||++|+.+..+++|++.|++ ||+|.+|+|+.+. ++|||||.|.++++|++|+..|||.. |.|++|.|..+..
T Consensus 10 ~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~~a~~ 89 (104)
T 2dhg_A 10 YSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAIP 89 (104)
T ss_dssp CCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCCBCCC
T ss_pred cEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEEEccC
Confidence 37999999999999999999999 9999999999875 58999999999999999999999999 9999999999974
Q ss_pred C
Q psy11609 76 V 76 (83)
Q Consensus 76 ~ 76 (83)
.
T Consensus 90 ~ 90 (104)
T 2dhg_A 90 K 90 (104)
T ss_dssp C
T ss_pred C
Confidence 3
No 90
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.81 E-value=1.1e-19 Score=118.30 Aligned_cols=75 Identities=21% Similarity=0.321 Sum_probs=71.3
Q ss_pred eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCC
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDV 76 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~ 76 (83)
+|||++++.+..+++|++.|++||+|.+|+|+.+. ++|||||.|.++++|++|+..|||..|.|++|.|..+...
T Consensus 44 ~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 122 (139)
T 1u6f_A 44 NLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALAASG 122 (139)
T ss_dssp EEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEESSCC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence 79999999999999999999999999999999885 4899999999999999999999999999999999999844
No 91
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=5.2e-20 Score=117.91 Aligned_cols=74 Identities=15% Similarity=0.207 Sum_probs=68.2
Q ss_pred eEeeeecCCcchhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCc--eecCeeeEEEecCCCC
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEK--HFFGCKIDVSPYHDVD 77 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~--~~~g~~i~V~~a~g~~ 77 (83)
+|||++|+.+..+++|++.|++||+|.+|.|+. ++|||||+|.++++|++|++.|||. .+.|++|+|+.+....
T Consensus 17 ~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~--~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a~~~~ 92 (104)
T 1wex_A 17 VVHVRGLCESVVEADLVEALEKFGTICYVMMMP--FKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYSTSKR 92 (104)
T ss_dssp EEEEESCCSSCCHHHHHHHHTTTSCEEEEEEET--TTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEECSSSS
T ss_pred EEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEC--CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEccCcc
Confidence 799999999999999999999999999999987 4899999999999999999988764 6999999999998543
No 92
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=1.7e-19 Score=110.53 Aligned_cols=72 Identities=25% Similarity=0.340 Sum_probs=68.0
Q ss_pred eEeeeecCCcchhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCCC
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDVD 77 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~~ 77 (83)
+|||++++.+..+++|++.|++||+|.+|+|+++ ||||.|.++++|++|+..|||..|.|++|.|..+....
T Consensus 12 ~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~~----~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 83 (92)
T 2dgt_A 12 KLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD----YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRL 83 (92)
T ss_dssp EEEEESCCSSCCHHHHHHHHHTTSCCCEEEECSS----EEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESSCCC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEECC----EEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccCCC
Confidence 7999999999999999999999999999999754 99999999999999999999999999999999998543
No 93
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.81 E-value=3.6e-20 Score=118.67 Aligned_cols=64 Identities=20% Similarity=0.175 Sum_probs=59.5
Q ss_pred chhhHHHHHhccCCceeEEEEeccC------CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCC
Q psy11609 12 SLKDGLYHEYKKHGKVSWVKIIGQG------GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHD 75 (83)
Q Consensus 12 ~~~d~L~~eF~kfG~Itsv~V~~d~------~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g 75 (83)
.++++|+++|++||+|.+|+|+.+. ++|+|||.|+++++|++|+++|||++|.||+|.|+.++.
T Consensus 27 ~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 27 EIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKFANRVVVTKYCDP 96 (105)
T ss_dssp HHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEECH
T ss_pred HHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEeCH
Confidence 4678899999999999999999874 589999999999999999999999999999999999864
No 94
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.81 E-value=4.5e-20 Score=115.24 Aligned_cols=74 Identities=14% Similarity=0.175 Sum_probs=69.6
Q ss_pred CeEeeeecCCcchhhHHHHHhccCCceeEEEEeccC-----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCC
Q psy11609 1 MALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG-----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHD 75 (83)
Q Consensus 1 ~~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~-----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g 75 (83)
.||||++++.+..+++|++.|++|| |.+|+|+.+. ++|||||.|.++++|++|+ .|||..|.|++|.|..+..
T Consensus 20 ~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~~a~~ 97 (100)
T 2j76_E 20 YTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVDVADQ 97 (100)
T ss_dssp CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCEECCC
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEEeccC
Confidence 3899999999999999999999999 9999999875 5899999999999999999 9999999999999999975
Q ss_pred C
Q psy11609 76 V 76 (83)
Q Consensus 76 ~ 76 (83)
.
T Consensus 98 ~ 98 (100)
T 2j76_E 98 A 98 (100)
T ss_dssp S
T ss_pred C
Confidence 4
No 95
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=2.1e-19 Score=114.03 Aligned_cols=73 Identities=18% Similarity=0.210 Sum_probs=69.5
Q ss_pred eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCC
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHD 75 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g 75 (83)
||||++|+.+..+++|++.|++||+|.+|+|+.+. ++|||||.|.++++|++|+..+|+ .|.|++|.|..+..
T Consensus 19 ~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~a~~ 95 (116)
T 2cqd_A 19 KIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNLAYL 95 (116)
T ss_dssp EEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEESTT
T ss_pred EEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEEccc
Confidence 79999999999999999999999999999999975 589999999999999999999999 89999999999964
No 96
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.81 E-value=4.7e-20 Score=118.32 Aligned_cols=73 Identities=18% Similarity=0.305 Sum_probs=70.1
Q ss_pred eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecC
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYH 74 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~ 74 (83)
||||++|+.+..+++|++.|++||+|.+|+|+.+. ++|||||+|.++++|++|+..|||..|.|++|.|+.+.
T Consensus 24 ~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 100 (126)
T 3ex7_B 24 ILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCF 100 (126)
T ss_dssp EEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEESE
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEec
Confidence 79999999999999999999999999999999875 48999999999999999999999999999999999997
No 97
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=1.1e-19 Score=111.71 Aligned_cols=76 Identities=14% Similarity=0.022 Sum_probs=71.6
Q ss_pred eEeeeecCCcchhhHHHHHhccCCceeEE-EEeccCCceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCCC
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWV-KIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDVD 77 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv-~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~~ 77 (83)
+|||++++.+..+++|++.|++||+|.+| .|+.+...+.|||.|.++++|++|+..|||..|.|++|.|..|+..+
T Consensus 17 ~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~~ 93 (96)
T 2e44_A 17 KLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPDEM 93 (96)
T ss_dssp CEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCCCC
T ss_pred EEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCccc
Confidence 79999999999999999999999999999 58888877779999999999999999999999999999999998654
No 98
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.81 E-value=2.9e-20 Score=121.55 Aligned_cols=65 Identities=25% Similarity=0.244 Sum_probs=61.3
Q ss_pred CcchhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecC
Q psy11609 10 DTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYH 74 (83)
Q Consensus 10 d~~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~ 74 (83)
++.++++|+++|++||+|.+|+|.++.++|+|||.|.++++|++|+++|||++|.||+|.|+.+.
T Consensus 27 ~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR~i~v~~~~ 91 (114)
T 3s6e_A 27 DTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGKMITAAYVP 91 (114)
T ss_dssp HHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred HHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEEc
Confidence 35678889999999999999999998889999999999999999999999999999999999985
No 99
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.81 E-value=1.3e-19 Score=116.34 Aligned_cols=75 Identities=13% Similarity=0.074 Sum_probs=71.5
Q ss_pred eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC---CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCC
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG---GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDV 76 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~---~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~ 76 (83)
+|||++++.+..+++|++.|++||+|.+|+|+.+. ++|||||.|.++++|++|+..|||..+.|++|.|+.|..+
T Consensus 37 ~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 114 (124)
T 2kt5_A 37 KLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVASQ 114 (124)
T ss_dssp EEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEECCT
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeCCC
Confidence 79999999999999999999999999999999976 6899999999999999999999999999999999998754
No 100
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.81 E-value=1.1e-19 Score=126.92 Aligned_cols=73 Identities=19% Similarity=0.291 Sum_probs=69.3
Q ss_pred eEeeeecC-CcchhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCC
Q psy11609 2 ALFIYVVS-DTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHD 75 (83)
Q Consensus 2 ~lfv~k~~-d~~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g 75 (83)
||||++|+ .+..+++|+..|++||+|.+|+|+.+ ++|||||.|.++++|++|++.|||..+.|++|+|..+..
T Consensus 6 ~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~-~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~ 79 (205)
T 3tyt_A 6 VLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS-KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQ 79 (205)
T ss_dssp EEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT-STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred EEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC-CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccC
Confidence 89999999 78999999999999999999999986 589999999999999999999999999999999998863
No 101
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=7.4e-20 Score=115.50 Aligned_cols=76 Identities=22% Similarity=0.257 Sum_probs=71.1
Q ss_pred eEeeeecCCcchhhHHHHHhccCCcee--------EEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeE
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGKVS--------WVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKID 69 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~It--------sv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~ 69 (83)
||||++|+.+..+++|++.|++||.|. .|+|+.+. ++|||||.|.++++|++|+..|||..|.|++|.
T Consensus 17 ~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 96 (113)
T 2cpe_A 17 AIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQGSKLK 96 (113)
T ss_dssp EEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEETTEECE
T ss_pred EEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccCCCEEE
Confidence 799999999999999999999999999 59999874 489999999999999999999999999999999
Q ss_pred EEecCCCC
Q psy11609 70 VSPYHDVD 77 (83)
Q Consensus 70 V~~a~g~~ 77 (83)
|..+....
T Consensus 97 V~~a~~~~ 104 (113)
T 2cpe_A 97 VSLARKKP 104 (113)
T ss_dssp EECSSCCC
T ss_pred EEECCCCC
Confidence 99998543
No 102
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=9.4e-20 Score=113.73 Aligned_cols=74 Identities=19% Similarity=0.271 Sum_probs=69.9
Q ss_pred eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCC
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDV 76 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~ 76 (83)
+|||++|+.+..+++|++.|++||+|.+|+|+.+. ++|||||+|.++++|++|+.. ||..|.|++|.|..+...
T Consensus 18 ~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~a~~~ 95 (105)
T 2dh8_A 18 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKPCTPR 95 (105)
T ss_dssp EECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCCSCCS
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEccCC
Confidence 79999999999999999999999999999999985 479999999999999999999 999999999999999743
No 103
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.6e-19 Score=112.68 Aligned_cols=74 Identities=14% Similarity=0.177 Sum_probs=69.6
Q ss_pred eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC-----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCC
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG-----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDV 76 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~-----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~ 76 (83)
||||++++.+..+++|++.|++|| |.+|+|+.+. ++|||||.|.++++|++|+ .|||..|.|++|.|..+..+
T Consensus 17 ~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~~ 94 (104)
T 1wi8_A 17 TAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVDVADQA 94 (104)
T ss_dssp EEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEEECCCC
T ss_pred EEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEEEccCC
Confidence 799999999999999999999999 9999999874 3899999999999999999 99999999999999999854
Q ss_pred C
Q psy11609 77 D 77 (83)
Q Consensus 77 ~ 77 (83)
.
T Consensus 95 ~ 95 (104)
T 1wi8_A 95 Q 95 (104)
T ss_dssp C
T ss_pred C
Confidence 3
No 104
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=1.2e-19 Score=110.73 Aligned_cols=72 Identities=24% Similarity=0.334 Sum_probs=68.2
Q ss_pred eEeeeecCCcchhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCCC
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDVD 77 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~~ 77 (83)
+|||++++.+..+++|++.|++||+|.+|+++++ ||||.|.++++|++|+..|||..+.|++|.|..++...
T Consensus 11 ~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~----~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 82 (90)
T 2dnp_A 11 KIFVGNVSAACTSQELRSLFERRGRVIECDVVKD----YAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTKGQ 82 (90)
T ss_dssp CEEEESCCTTCCHHHHHHHHHHHSCEEEEEECSS----CEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCCCC
T ss_pred EEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEECC----EEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCCCC
Confidence 7999999999999999999999999999999854 99999999999999999999999999999999998543
No 105
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.80 E-value=9.7e-20 Score=114.93 Aligned_cols=72 Identities=19% Similarity=0.332 Sum_probs=68.5
Q ss_pred eEeeeecCCc-chhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCCC
Q psy11609 2 ALFIYVVSDT-SLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDVD 77 (83)
Q Consensus 2 ~lfv~k~~d~-~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~~ 77 (83)
+|||++++.+ ..+++|++.|++||+|.+|+| ++|||||+|.++++|++|++.|||..|.|++|.|+.+..+.
T Consensus 29 ~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i----~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~ 101 (110)
T 1wf1_A 29 RVFIGNLNTALVKKSDVETIFSKYGRVAGCSV----HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAGEPK 101 (110)
T ss_dssp EEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE----ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESCCCC
T ss_pred EEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE----eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCCC
Confidence 7999999999 999999999999999999999 68999999999999999999999999999999999998544
No 106
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.80 E-value=1.3e-19 Score=118.95 Aligned_cols=66 Identities=27% Similarity=0.275 Sum_probs=61.0
Q ss_pred CcchhhHHHHHhccCCceeEEEEeccC--------CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCC
Q psy11609 10 DTSLKDGLYHEYKKHGKVSWVKIIGQG--------GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHD 75 (83)
Q Consensus 10 d~~~~d~L~~eF~kfG~Itsv~V~~d~--------~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g 75 (83)
++.++++|+++|++||+|.+|+|+.+. ++|+|||.|.++++|.+|+++|||++|.||+|.|+.++.
T Consensus 35 ~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~GR~i~v~~~~~ 108 (118)
T 3ue2_A 35 DDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQ 108 (118)
T ss_dssp CTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEECH
T ss_pred HHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECCcEEEEEEcCh
Confidence 456899999999999999999999874 259999999999999999999999999999999999874
No 107
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=3.2e-19 Score=110.40 Aligned_cols=72 Identities=13% Similarity=0.188 Sum_probs=66.5
Q ss_pred eEeeeecCCcchhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCCC
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDVD 77 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~~ 77 (83)
+|||+++ +..+++|++.|++||+|.+|+|. .++|||||.|.++++|++|+..|||..|.|++|.|..+..+.
T Consensus 17 ~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~--~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~~ 88 (97)
T 1x5p_A 17 TLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD--PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQP 88 (97)
T ss_dssp EEEEECS--SCCHHHHHHHHTTTSCEEEEEEE--TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSSCC
T ss_pred EEEEcCC--CCCHHHHHHHHhhCCCEEEEEec--CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCCC
Confidence 7999984 78888999999999999999995 589999999999999999999999999999999999998543
No 108
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.80 E-value=8.1e-20 Score=120.82 Aligned_cols=75 Identities=21% Similarity=0.193 Sum_probs=71.6
Q ss_pred eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCC
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDV 76 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~ 76 (83)
+|||++|+.+..+++|++.|++||+|.+|+|+.|. ++|||||.|.++++|++|+..|||..|.|++|.|..+..+
T Consensus 72 ~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 150 (158)
T 2kn4_A 72 SLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYG 150 (158)
T ss_dssp EEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECCS
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence 79999999999999999999999999999999875 6899999999999999999999999999999999999843
No 109
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.80 E-value=7.9e-20 Score=113.39 Aligned_cols=71 Identities=11% Similarity=0.104 Sum_probs=68.2
Q ss_pred eEeeeecCCcchhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecC
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYH 74 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~ 74 (83)
||||++++.+..+++|++.|++||+|.+|+++ .++|||||.|.++++|++|+..|||..+.|++|.|..+.
T Consensus 29 ~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~--~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 99 (101)
T 2la4_A 29 TAYIGNIPHFATEADLIPLFQNFGFILDFKHY--PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGK 99 (101)
T ss_dssp EEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE--TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCC
T ss_pred EEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe--cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEecc
Confidence 79999999999999999999999999999998 479999999999999999999999999999999998875
No 110
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.80 E-value=7.9e-20 Score=113.18 Aligned_cols=71 Identities=20% Similarity=0.319 Sum_probs=67.3
Q ss_pred eEeeeecCC-cchhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCC
Q psy11609 2 ALFIYVVSD-TSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDV 76 (83)
Q Consensus 2 ~lfv~k~~d-~~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~ 76 (83)
+|||++++. +..+++|++.|++||+|.+|+|. +|||||+|.++++|++|+..|||..+.|++|.|+.+...
T Consensus 12 ~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~ 83 (96)
T 2kvi_A 12 RLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK----NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSSSN 83 (96)
T ss_dssp EEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE----TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEECC
T ss_pred EEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe----CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcCcC
Confidence 799999998 99999999999999999999994 799999999999999999999999999999999999743
No 111
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.80 E-value=1e-19 Score=119.44 Aligned_cols=75 Identities=21% Similarity=0.243 Sum_probs=71.1
Q ss_pred eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCC
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDV 76 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~ 76 (83)
+|||++|+.+..+++|++.|++||+|.+|+|+.+. ++|||||+|.++++|++|+..|||..|.|++|.|..+..+
T Consensus 48 ~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~a~~~ 126 (129)
T 2kxn_B 48 CLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFSITK 126 (129)
T ss_dssp CBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESCCSSS
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCC
Confidence 79999999999999999999999999999999874 6899999999999999999999999999999999998754
No 112
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.80 E-value=1.8e-19 Score=114.87 Aligned_cols=71 Identities=25% Similarity=0.305 Sum_probs=68.4
Q ss_pred eEeeeecCCcchhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCC
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDV 76 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~ 76 (83)
+|||++++.+..+++|++.|++||+|.+|+++ +|||||.|.++++|++|+..|||..+.|++|.|+.+..+
T Consensus 33 ~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~----kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 103 (108)
T 2jvo_A 33 RLFVRPFPLDVQESELNEIFGPFGPMKEVKIL----NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSKLP 103 (108)
T ss_dssp EEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE----TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCSCC
T ss_pred EEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE----CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCC
Confidence 79999999999999999999999999999998 899999999999999999999999999999999999854
No 113
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.80 E-value=2.4e-19 Score=119.02 Aligned_cols=76 Identities=14% Similarity=0.125 Sum_probs=71.8
Q ss_pred eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCCC
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDVD 77 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~~ 77 (83)
+|||++|+.++.+++|++.|++||+|.+|+|+.+. ++|||||+|.++++|++|+..|||..|.|++|.|+.+..+.
T Consensus 41 ~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 120 (156)
T 1h2v_Z 41 TLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWDAGFK 120 (156)
T ss_dssp EEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEESCCC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCC
Confidence 79999999999999999999999999999999875 47999999999999999999999999999999999998544
No 114
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=2.9e-19 Score=113.42 Aligned_cols=74 Identities=18% Similarity=0.269 Sum_probs=70.1
Q ss_pred eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCC
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDV 76 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~ 76 (83)
+|||++|+.+..+++|++.|++||+|.+|+|+.+. ++|||||.|.++++|++|+.. ||..|.|++|.|..+...
T Consensus 29 ~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~~~ 106 (116)
T 1x4b_A 29 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAVAR 106 (116)
T ss_dssp EEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCSSC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECCCC
Confidence 79999999999999999999999999999999975 589999999999999999998 999999999999999844
No 115
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=1e-19 Score=119.14 Aligned_cols=73 Identities=10% Similarity=0.085 Sum_probs=67.7
Q ss_pred eEeeeecCCc-chhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcC--CceecCeeeEEEecCCC
Q psy11609 2 ALFIYVVSDT-SLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSH--EKHFFGCKIDVSPYHDV 76 (83)
Q Consensus 2 ~lfv~k~~d~-~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~n--g~~~~g~~i~V~~a~g~ 76 (83)
+|||++|+++ +.+++|++.|++||+|++|+|++ ++|||||+|.++++|++|++.|| +..|.|++|+|+.++..
T Consensus 27 ~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~--~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~~ 102 (112)
T 1x4f_A 27 VIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR--MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLSEKY 102 (112)
T ss_dssp EEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET--TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEECSC
T ss_pred EEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec--CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEECccc
Confidence 7999999998 99999999999999999999986 68999999999999999999885 46799999999999854
No 116
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.80 E-value=2.2e-19 Score=112.19 Aligned_cols=72 Identities=25% Similarity=0.380 Sum_probs=68.0
Q ss_pred eEeeeecCCcchhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCCC
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDVD 77 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~~ 77 (83)
+|||++++.+..+++|++.|++||+|.+|+|+ ++||||+|.++++|++|++.|||..|.|++|.|..+..+.
T Consensus 13 ~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~----~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 84 (103)
T 2dgu_A 13 VLFVRNLANTVTEEILEKAFSQFGKLERVKKL----KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPD 84 (103)
T ss_dssp CEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC----SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCCC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE----CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCCCc
Confidence 79999999999999999999999999999997 4599999999999999999999999999999999998544
No 117
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=4.2e-19 Score=108.31 Aligned_cols=74 Identities=12% Similarity=0.094 Sum_probs=69.5
Q ss_pred CeEeeeecCCcchhhHHHHHhccCCceeEEEEeccC---CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCC
Q psy11609 1 MALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG---GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDV 76 (83)
Q Consensus 1 ~~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~---~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~ 76 (83)
.+|||++++.+..+++|++.|++| .|.+|+|+.+. ++|||||.|.++++|++|+. |||..|.|++|.|..++..
T Consensus 11 ~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a~~~ 87 (91)
T 2dgw_A 11 HTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFREKSG 87 (91)
T ss_dssp CEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEESSC
T ss_pred cEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEECCcC
Confidence 379999999999999999999999 99999999874 48999999999999999999 9999999999999999854
No 118
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.79 E-value=2.5e-19 Score=123.83 Aligned_cols=74 Identities=22% Similarity=0.372 Sum_probs=70.8
Q ss_pred eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC--CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCC
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG--GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHD 75 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~--~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g 75 (83)
+|||+++..+..+++|++.|++||+|.+|+|+.|. ++|||||+|.++|+|++|++.|||..|.|++|.|..|+.
T Consensus 105 ~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~~ 180 (213)
T 4f02_A 105 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 180 (213)
T ss_dssp EEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceECCcccccHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcCC
Confidence 69999999999999999999999999999999876 589999999999999999999999999999999999874
No 119
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.79 E-value=2e-19 Score=125.04 Aligned_cols=77 Identities=13% Similarity=0.181 Sum_probs=71.4
Q ss_pred CeEeeeecCCcchhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCceecC--eeeEEEecCCCC
Q psy11609 1 MALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFG--CKIDVSPYHDVD 77 (83)
Q Consensus 1 ~~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~g--~~i~V~~a~g~~ 77 (83)
++|||++|+.+..+++|++.|++||+|.+|+|+.+.++|||||.|.++++|++|+++|||..|+| |+|.|+.+...+
T Consensus 47 l~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~~~ 125 (164)
T 1sjr_A 47 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTS 125 (164)
T ss_dssp EEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECSSSS
T ss_pred EEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEecCCc
Confidence 36899999999999999999999999999999877788999999999999999999999999976 999999998543
No 120
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.79 E-value=3.6e-19 Score=110.05 Aligned_cols=70 Identities=16% Similarity=0.162 Sum_probs=62.8
Q ss_pred CeEeeeecCCcchhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCcee--cCeeeEEEecCC
Q psy11609 1 MALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHF--FGCKIDVSPYHD 75 (83)
Q Consensus 1 ~~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~--~g~~i~V~~a~g 75 (83)
+||||++|+.++.+++|++.|++||+|.+|+|+.+ ++|||||+|.++++|++ ++|..+ .|++|.|..|..
T Consensus 12 ~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~~a~~ 83 (89)
T 3d2w_A 12 SKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-FRAFAFVTFADDKVAQS----LCGEDLIIKGISVHISNAEP 83 (89)
T ss_dssp CEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-CCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEEECC-
T ss_pred CEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-CCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEEEcCC
Confidence 58999999999999999999999999999999986 89999999999999984 466554 599999999874
No 121
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.79 E-value=3.7e-20 Score=120.64 Aligned_cols=75 Identities=12% Similarity=0.140 Sum_probs=70.8
Q ss_pred eEeeeecCCcchhhHHHHHhccCCceeE--EEEeccC----CceEEEEEeCCchHHHHHHhhcCCc----eecCeeeEEE
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGKVSW--VKIIGQG----GDRYGLVCFKKADDAEKAILGSHEK----HFFGCKIDVS 71 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~Its--v~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~----~~~g~~i~V~ 71 (83)
+|||++|+.+..+++|++.|++||.|.+ |+|+.|. ++|||||+|.++ +|.+|+..|||. .+.|++|.|.
T Consensus 25 ~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~l~V~ 103 (131)
T 2m2b_A 25 TIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKTINVE 103 (131)
T ss_dssp EEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCCCCCE
T ss_pred EEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEEEEEE
Confidence 7999999999999999999999999977 9999987 589999999999 999999999999 9999999999
Q ss_pred ecCCCC
Q psy11609 72 PYHDVD 77 (83)
Q Consensus 72 ~a~g~~ 77 (83)
.+...+
T Consensus 104 ~a~~~~ 109 (131)
T 2m2b_A 104 FAKGSK 109 (131)
T ss_dssp ECCCSC
T ss_pred ECCCCC
Confidence 998543
No 122
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=5.9e-19 Score=112.44 Aligned_cols=75 Identities=17% Similarity=0.297 Sum_probs=64.7
Q ss_pred eEeeeecCCcc-----------hhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCceecCeeeEE
Q psy11609 2 ALFIYVVSDTS-----------LKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDV 70 (83)
Q Consensus 2 ~lfv~k~~d~~-----------~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V 70 (83)
||++.++.+.. ++++|+++|++||+|.+|.|....++|||||.|.++++|++|+..|||+.|.|++|.|
T Consensus 17 ~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l~v 96 (112)
T 2dit_A 17 VVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFGGRQITA 96 (112)
T ss_dssp EEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEETTEECEE
T ss_pred EEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 56776663322 4678999999999999997755558999999999999999999999999999999999
Q ss_pred EecCCC
Q psy11609 71 SPYHDV 76 (83)
Q Consensus 71 ~~a~g~ 76 (83)
..|+..
T Consensus 97 ~~a~~~ 102 (112)
T 2dit_A 97 QAWDGT 102 (112)
T ss_dssp EECCSC
T ss_pred EEeCCC
Confidence 999864
No 123
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.79 E-value=2.1e-19 Score=115.86 Aligned_cols=74 Identities=14% Similarity=0.039 Sum_probs=69.5
Q ss_pred CeEeeeecCCcchhhHHHHHhccCCc---eeEEEEeccC---CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecC
Q psy11609 1 MALFIYVVSDTSLKDGLYHEYKKHGK---VSWVKIIGQG---GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYH 74 (83)
Q Consensus 1 ~~lfv~k~~d~~~~d~L~~eF~kfG~---Itsv~V~~d~---~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~ 74 (83)
.||||++|+.++.+++|++.|++||. |.+|+|+.+. ++|||||+|+++++|++|+. +||..|.|++|.|..++
T Consensus 18 ~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a~ 96 (118)
T 2db1_A 18 YVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEVFKSH 96 (118)
T ss_dssp CEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEEEEEC
T ss_pred cEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEEEECC
Confidence 37999999999999999999999999 8999999875 58999999999999999999 99999999999999886
Q ss_pred C
Q psy11609 75 D 75 (83)
Q Consensus 75 g 75 (83)
.
T Consensus 97 ~ 97 (118)
T 2db1_A 97 R 97 (118)
T ss_dssp H
T ss_pred H
Confidence 4
No 124
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=6.7e-19 Score=109.05 Aligned_cols=72 Identities=26% Similarity=0.373 Sum_probs=67.8
Q ss_pred eEeeeecCCcchhhHHHHHhccC--CceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCCC
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKH--GKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDVD 77 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kf--G~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~~ 77 (83)
+|||++|+.+..+++|++.|++| |.|.+|+++ +|||||.|.++++|++|+..|||..|.|++|.|..+....
T Consensus 17 ~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 90 (99)
T 2cpd_A 17 ILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI----RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKPVD 90 (99)
T ss_dssp EEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC----SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECCCCCC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe----CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECCCCC
Confidence 79999999999999999999999 999999884 6799999999999999999999999999999999998544
No 125
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=2.7e-19 Score=112.02 Aligned_cols=76 Identities=17% Similarity=0.148 Sum_probs=69.7
Q ss_pred eEeeeecCCcchhhHHHHHhccCCc-eeEEEEe-ccC----CceEEEEEeCCchHHHHHHhhcC--CceecCeeeEEEec
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGK-VSWVKII-GQG----GDRYGLVCFKKADDAEKAILGSH--EKHFFGCKIDVSPY 73 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~-Itsv~V~-~d~----~~g~afV~F~~pEdA~~A~~~~n--g~~~~g~~i~V~~a 73 (83)
||||++|+.+..+++|++.|++||+ |.+|.++ .+. ++|||||+|.++++|++|+..|| +..+.|++|.|..|
T Consensus 10 ~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~V~~a 89 (109)
T 2dis_A 10 RLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWA 89 (109)
T ss_dssp EEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEEEES
T ss_pred EEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEEEEEc
Confidence 7999999999999999999999999 9999998 443 68999999999999999999996 58999999999999
Q ss_pred CCCC
Q psy11609 74 HDVD 77 (83)
Q Consensus 74 ~g~~ 77 (83)
....
T Consensus 90 ~~~~ 93 (109)
T 2dis_A 90 EPEI 93 (109)
T ss_dssp CSSC
T ss_pred CCCC
Confidence 8443
No 126
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.79 E-value=6.4e-19 Score=114.14 Aligned_cols=76 Identities=16% Similarity=0.218 Sum_probs=71.6
Q ss_pred eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC---CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCCC
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG---GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDVD 77 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~---~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~~ 77 (83)
||||++++.+..+++|++.|++||+|.+|+++.+. ++|||||.|.++++|++|++.+||..+.|++|.|..+....
T Consensus 2 ~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~ 80 (166)
T 3md3_A 2 VLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQ 80 (166)
T ss_dssp EEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCC
T ss_pred EEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCC
Confidence 79999999999999999999999999999999876 58999999999999999999999999999999999987443
No 127
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=4e-19 Score=112.24 Aligned_cols=75 Identities=15% Similarity=0.093 Sum_probs=70.1
Q ss_pred CeEeeeecCCcchhhHHHHHhccCCceeEEEEeccC---CceEEEEEeCCchHHHHHHhhcCCcee--------cCeeeE
Q psy11609 1 MALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG---GDRYGLVCFKKADDAEKAILGSHEKHF--------FGCKID 69 (83)
Q Consensus 1 ~~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~---~~g~afV~F~~pEdA~~A~~~~ng~~~--------~g~~i~ 69 (83)
.+|||++++.+..+++|++.|++||+|.+|+|+.+. ++|||||.|.++++|++|+..|||..+ .|+||.
T Consensus 26 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~~~l~ 105 (114)
T 1x5o_A 26 TNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLL 105 (114)
T ss_dssp TEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCSSCBE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCCCcee
Confidence 379999999999999999999999999999999985 489999999999999999999999999 688899
Q ss_pred EEecCC
Q psy11609 70 VSPYHD 75 (83)
Q Consensus 70 V~~a~g 75 (83)
|..|.-
T Consensus 106 v~~a~p 111 (114)
T 1x5o_A 106 CKFSGP 111 (114)
T ss_dssp EEECCC
T ss_pred EEccCC
Confidence 999873
No 128
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=5.3e-20 Score=110.88 Aligned_cols=73 Identities=21% Similarity=0.183 Sum_probs=68.2
Q ss_pred CeEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEec
Q psy11609 1 MALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPY 73 (83)
Q Consensus 1 ~~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a 73 (83)
.+|||++++.+..+++|++.|++||+|.+|+|+.+. ++|||||.|.++++|++|++.|||..+.|+.|+|..+
T Consensus 6 ~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 6 SGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 389999999999999999999999999999999875 4899999999999999999999999999999988643
No 129
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.79 E-value=7.6e-19 Score=117.99 Aligned_cols=75 Identities=13% Similarity=0.239 Sum_probs=69.2
Q ss_pred CeEeeeecCCcchhhHHHHHhccCCceeEEEEeccCCceE-EEEEeCCchHHHHHHhhcCCceecC--eeeEEEecCCC
Q psy11609 1 MALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRY-GLVCFKKADDAEKAILGSHEKHFFG--CKIDVSPYHDV 76 (83)
Q Consensus 1 ~~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~~~g~-afV~F~~pEdA~~A~~~~ng~~~~g--~~i~V~~a~g~ 76 (83)
+.|||++|+....+++|++.|++||+|.+|+|+.+ ++|| |||+|.++++|++|+++|||..|+| |+|+|+.+.-.
T Consensus 29 L~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~-~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~~ 106 (130)
T 3zzy_A 29 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLT 106 (130)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE-TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECSCS
T ss_pred EEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC-CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecCCC
Confidence 35899999999999999999999999999998875 4687 9999999999999999999999999 99999999754
No 130
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.79 E-value=2.7e-19 Score=127.35 Aligned_cols=75 Identities=16% Similarity=0.203 Sum_probs=71.0
Q ss_pred CeEeeeecCCcchhhHHHHHhccCC--ceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecC
Q psy11609 1 MALFIYVVSDTSLKDGLYHEYKKHG--KVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYH 74 (83)
Q Consensus 1 ~~lfv~k~~d~~~~d~L~~eF~kfG--~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~ 74 (83)
.+|||++|+.++.+++|++.|++|| +|.+|+|+.|. ++|||||+|.++++|++|+..|||..|.|++|.|..|.
T Consensus 69 ~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~a~ 148 (229)
T 3q2s_C 69 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPVN 148 (229)
T ss_dssp CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEECC
T ss_pred cEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEECC
Confidence 3799999999999999999999999 99999999985 58999999999999999999999999999999999886
Q ss_pred C
Q psy11609 75 D 75 (83)
Q Consensus 75 g 75 (83)
.
T Consensus 149 ~ 149 (229)
T 3q2s_C 149 K 149 (229)
T ss_dssp H
T ss_pred C
Confidence 3
No 131
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.79 E-value=5.9e-19 Score=114.33 Aligned_cols=73 Identities=18% Similarity=0.223 Sum_probs=69.7
Q ss_pred eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecC
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYH 74 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~ 74 (83)
+|||++++.+..+++|++.|++||.|.+|.++.+. ++|||||.|.++++|.+|+..|||..+.|++|.|..|+
T Consensus 89 ~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~ 165 (166)
T 3md3_A 89 NLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAA 165 (166)
T ss_dssp EEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESC
T ss_pred eEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEecC
Confidence 79999999999999999999999999999999874 58999999999999999999999999999999999986
No 132
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.79 E-value=7.2e-20 Score=107.85 Aligned_cols=71 Identities=11% Similarity=0.179 Sum_probs=66.5
Q ss_pred eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEec
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPY 73 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a 73 (83)
||||++++.+..+++|++.|++||+|.+|.++.+. ++|||||.|.++++|++|+.. +|..+.|++|.|..|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEC
Confidence 79999999999999999999999999999999874 589999999999999999985 899999999999875
No 133
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.79 E-value=6.4e-19 Score=112.01 Aligned_cols=74 Identities=19% Similarity=0.259 Sum_probs=69.1
Q ss_pred eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCC
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDV 76 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~ 76 (83)
||||++++.+..+++|++.|++||+|.+|+|+.+. ++|||||.|.++++|++|+..+ |..|.|++|.|..+...
T Consensus 27 ~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~~a~~~ 104 (109)
T 2rs2_A 27 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPKVAFPR 104 (109)
T ss_dssp CEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEEECCCC
T ss_pred EEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEEEccCC
Confidence 79999999999999999999999999999999975 5899999999999999999987 59999999999999743
No 134
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.79 E-value=2.3e-19 Score=114.59 Aligned_cols=62 Identities=23% Similarity=0.302 Sum_probs=56.8
Q ss_pred chhhHHHHHh-ccCCceeEEEEeccC---CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEec
Q psy11609 12 SLKDGLYHEY-KKHGKVSWVKIIGQG---GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPY 73 (83)
Q Consensus 12 ~~~d~L~~eF-~kfG~Itsv~V~~d~---~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a 73 (83)
.+.++|+++| ++||+|.+|+|+.+. ++|||||.|.++++|++|+++|||+.|.||+|.|+.+
T Consensus 38 ~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~v~~s 103 (104)
T 1jmt_A 38 EFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHAELS 103 (104)
T ss_dssp HHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECCEEEC
T ss_pred HHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEEEEEc
Confidence 4556777888 999999999999875 6999999999999999999999999999999999876
No 135
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=2.9e-19 Score=113.98 Aligned_cols=74 Identities=22% Similarity=0.108 Sum_probs=69.6
Q ss_pred CeEeeeecCCcchhhHHHHHhccCCce-eEEEEeccC---CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCC
Q psy11609 1 MALFIYVVSDTSLKDGLYHEYKKHGKV-SWVKIIGQG---GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHD 75 (83)
Q Consensus 1 ~~lfv~k~~d~~~~d~L~~eF~kfG~I-tsv~V~~d~---~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g 75 (83)
.+|||++|+.++.+++|++.|++||.| .+|+|+.|. ++|||||+|.++++|++|+.. ||..|.|++|.|..+..
T Consensus 16 ~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~~a~~ 93 (114)
T 2cpy_A 16 VCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVHVVTL 93 (114)
T ss_dssp CEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEEEECH
T ss_pred cEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEEECCH
Confidence 389999999999999999999999999 999999876 689999999999999999988 99999999999998863
No 136
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.78 E-value=3.4e-19 Score=108.78 Aligned_cols=72 Identities=15% Similarity=0.150 Sum_probs=68.3
Q ss_pred CeEeeeecCCcchhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCC
Q psy11609 1 MALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHD 75 (83)
Q Consensus 1 ~~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g 75 (83)
.+|||++++.+..+++|++.|++| +|.+|+|. .++|||||.|.++++|++|++.|||..+.|++|.|+.+..
T Consensus 6 ~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~--~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 77 (88)
T 1wg1_A 6 SGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD--RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPT 77 (88)
T ss_dssp CCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE--GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe--CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCC
Confidence 379999999999999999999999 99999995 6899999999999999999999999999999999999874
No 137
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.78 E-value=6.2e-19 Score=121.83 Aligned_cols=75 Identities=16% Similarity=0.212 Sum_probs=71.1
Q ss_pred eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCC
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDV 76 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~ 76 (83)
||||++|+.+..+++|++.|++||+|.+|+|+.|. ++|||||.|.++++|++|++.+||..+.|++|.|..+...
T Consensus 17 tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~~~~ 95 (213)
T 4f02_A 17 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRD 95 (213)
T ss_dssp EEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccccccc
Confidence 89999999999999999999999999999999875 5899999999999999999999999999999999988754
No 138
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=4.1e-19 Score=112.33 Aligned_cols=77 Identities=10% Similarity=0.059 Sum_probs=69.9
Q ss_pred CeEeeeecCCcchhhHHHHHhccCCceeEEEEeccC---CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCCC
Q psy11609 1 MALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG---GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDVD 77 (83)
Q Consensus 1 ~~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~---~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~~ 77 (83)
.+|||++|+.++.+++|++.|++||.| +|+|+.+. ++|||||+|.++++|++|+ .+||..|.|++|.|..+..++
T Consensus 16 ~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~~~~~~ 93 (102)
T 1wez_A 16 HCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAM-AKDKANMQHRYVELFLNSTAG 93 (102)
T ss_dssp CEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHH-TTSSCCSSSSCCEEEEECCCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHH-HhCCCeECCcEEEEEECCCCC
Confidence 379999999999999999999999955 89999876 5899999999999999999 589999999999999988665
Q ss_pred cc
Q psy11609 78 FE 79 (83)
Q Consensus 78 ~e 79 (83)
..
T Consensus 94 ~~ 95 (102)
T 1wez_A 94 TS 95 (102)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 139
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.6e-19 Score=110.59 Aligned_cols=72 Identities=17% Similarity=0.150 Sum_probs=66.9
Q ss_pred eEeeeecCCcchhhHHHHHhccCCc-eeEEEEeccCCceEEEEEeCCchHHHHHHhhcCC-ceecCeeeEEEecCCC
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGK-VSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHE-KHFFGCKIDVSPYHDV 76 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~-Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng-~~~~g~~i~V~~a~g~ 76 (83)
+|||++|+.+..+++|++.|++||+ |..+.+. ++|||||.|.++++|++|++.||| ..+.|++|.|..+...
T Consensus 10 ~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~---~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 83 (93)
T 2cqh_A 10 KLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL---KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSVSK 83 (93)
T ss_dssp CEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE---ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECCCC
T ss_pred EEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc---CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEccCc
Confidence 7999999999999999999999999 7777763 589999999999999999999999 9999999999999853
No 140
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.78 E-value=5.6e-19 Score=118.83 Aligned_cols=73 Identities=16% Similarity=0.256 Sum_probs=70.1
Q ss_pred eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecC
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYH 74 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~ 74 (83)
||||++|+.+..+++|+..|++||+|.+|.|+.+. ++|||||+|.++++|++|+..|||..|.|++|.|..+.
T Consensus 74 ~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 150 (165)
T 1rk8_A 74 ILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCF 150 (165)
T ss_dssp EEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESE
T ss_pred EEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEec
Confidence 79999999999999999999999999999999875 48999999999999999999999999999999999987
No 141
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.78 E-value=4.3e-19 Score=113.75 Aligned_cols=70 Identities=16% Similarity=0.224 Sum_probs=66.6
Q ss_pred eEeeeecCCcchhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCceecCee-----eEEEecC
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCK-----IDVSPYH 74 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~-----i~V~~a~ 74 (83)
+|||++|+.++.+++|++.|++||+|.+|+|+.+ |||||+|.++++|++|++.|||..|.|++ |.|..+.
T Consensus 18 ~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~~~~ 92 (115)
T 3beg_B 18 RVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD---GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDG 92 (115)
T ss_dssp CEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT---SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEEECC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC---CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEeccCC
Confidence 7999999999999999999999999999999987 99999999999999999999999999999 7777765
No 142
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.78 E-value=2.4e-19 Score=118.25 Aligned_cols=75 Identities=21% Similarity=0.193 Sum_probs=71.1
Q ss_pred eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCC
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDV 76 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~ 76 (83)
||||++|+.+..+++|++.|++||+|.+|+|+.+. ++|||||.|.++++|++|+..|||..|.|++|.|..+...
T Consensus 49 ~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~ 127 (135)
T 2lea_A 49 SLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYG 127 (135)
T ss_dssp CEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCCC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCC
Confidence 79999999999999999999999999999999874 5899999999999999999999999999999999999843
No 143
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=6.2e-19 Score=110.88 Aligned_cols=76 Identities=13% Similarity=0.027 Sum_probs=69.6
Q ss_pred CeEeeeecCCcchhhHHHHHhccCCceeE-EEEeccC---CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCC
Q psy11609 1 MALFIYVVSDTSLKDGLYHEYKKHGKVSW-VKIIGQG---GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDV 76 (83)
Q Consensus 1 ~~lfv~k~~d~~~~d~L~~eF~kfG~Its-v~V~~d~---~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~ 76 (83)
.+|||++|+.++.+++|++.|++||.|.+ |.|+.+. ++|||||.|.++++|++|+.. ||..+.|++|.|..+...
T Consensus 16 ~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~~~~~ 94 (104)
T 1wg5_A 16 GFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFKSSRA 94 (104)
T ss_dssp CEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEEECTT
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEECCHH
Confidence 37999999999999999999999999997 8888764 589999999999999999998 999999999999998754
Q ss_pred C
Q psy11609 77 D 77 (83)
Q Consensus 77 ~ 77 (83)
+
T Consensus 95 ~ 95 (104)
T 1wg5_A 95 E 95 (104)
T ss_dssp T
T ss_pred H
Confidence 4
No 144
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.5e-19 Score=116.60 Aligned_cols=75 Identities=19% Similarity=0.204 Sum_probs=67.8
Q ss_pred CeEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCC
Q psy11609 1 MALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDV 76 (83)
Q Consensus 1 ~~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~ 76 (83)
.+|||++|+.++.+++|++.|++||.|.++.++.+. ++|||||+|.++++|++|+. |||..|.|++|.|..+...
T Consensus 26 ~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a~~~ 104 (124)
T 1wel_A 26 FCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPITKK 104 (124)
T ss_dssp CEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEEECHH
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEECCHH
Confidence 389999999999999999999999999985555543 58999999999999999999 9999999999999998743
No 145
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=4.8e-19 Score=111.81 Aligned_cols=76 Identities=9% Similarity=0.098 Sum_probs=69.5
Q ss_pred eEeeeecCCcchhhHHHHHhccCCce----eEEEEeccCCceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCCC
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGKV----SWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDVD 77 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~I----tsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~~ 77 (83)
+|||++++.+..+++|++.|++||.| ..++++...++|||||.|.++++|++|+..|||..|.|++|.|..+....
T Consensus 27 ~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~~ 106 (115)
T 2cpx_A 27 VLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFGKNKK 106 (115)
T ss_dssp EEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEECCCCS
T ss_pred EEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEccCCC
Confidence 79999999999999999999999999 56777655579999999999999999999999999999999999998543
No 146
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.78 E-value=6.5e-19 Score=108.14 Aligned_cols=74 Identities=16% Similarity=0.132 Sum_probs=66.8
Q ss_pred eEeeeecCCcchhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCC
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDV 76 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~ 76 (83)
||||++++.+..+++|++.|++||+|..+ -....++|||||.|.++++|++|+..|||..+.|++|.|..+...
T Consensus 18 ~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 91 (96)
T 1fjc_A 18 TLLAKNLSFNITEDELKEVFEDALEIRLV-SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEK 91 (96)
T ss_dssp EEEEESCCSSCCHHHHHHHHCSEEEECCE-EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECSSS
T ss_pred EEEEeCCCCCCCHHHHHHHHhhCCcEEEe-CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 79999999999999999999999999877 222236999999999999999999999999999999999999744
No 147
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.6e-18 Score=107.73 Aligned_cols=74 Identities=15% Similarity=0.186 Sum_probs=68.5
Q ss_pred eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCCC
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDVD 77 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~~ 77 (83)
+|||++|+.+..+++|++.|++||+|.+|+|+.+. ++|||||.|.++++|++|+. ++..|.|++|.|..+...+
T Consensus 17 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~~a~~~~ 94 (103)
T 2cqg_A 17 DLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCKLPNSKQ 94 (103)
T ss_dssp CEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEECCCTTC
T ss_pred EEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEEecCCCC
Confidence 79999999999999999999999999999999975 48999999999999999998 4789999999999998544
No 148
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.78 E-value=8.7e-19 Score=114.93 Aligned_cols=72 Identities=15% Similarity=0.180 Sum_probs=68.9
Q ss_pred eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEec
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPY 73 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a 73 (83)
+|||++++.+..+++|++.|++||+|.+|.++.+. ++|||||.|.++++|.+|++.|||..+.|++|.|..|
T Consensus 96 ~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 96 KLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp CEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred EEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 79999999999999999999999999999999985 4899999999999999999999999999999999987
No 149
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=1.1e-18 Score=108.19 Aligned_cols=73 Identities=16% Similarity=0.245 Sum_probs=66.4
Q ss_pred eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC---CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCCC
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG---GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDVD 77 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~---~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~~ 77 (83)
+|||++|+.+..+++|++.|++||+| +++.+. ++|||||.|.++++|++|+..|||..|.|++|.|+.+..+.
T Consensus 17 ~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 92 (101)
T 2fc9_A 17 TLVLSNLSYSATEETLQEVFEKATFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRG 92 (101)
T ss_dssp EEEEESCCTTCCHHHHHHHCSSCSEE---ECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEECSSCC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhCCEE---EEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEcCCCC
Confidence 79999999999999999999999988 455542 58999999999999999999999999999999999998543
No 150
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.77 E-value=9.2e-19 Score=114.78 Aligned_cols=74 Identities=12% Similarity=0.162 Sum_probs=67.4
Q ss_pred eEeeeecCCcchhhHHHHHhccCCceeEE--------EEeccC-CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEe
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWV--------KIIGQG-GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSP 72 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv--------~V~~d~-~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~ 72 (83)
+|||++|+.+..+++|+..|++||.|.+| ++.... ++|||||+|.++++|++|+..|||..|.|++|.|..
T Consensus 47 ~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~ 126 (143)
T 3egn_A 47 RIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMVVQF 126 (143)
T ss_dssp EEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEECEEEE
T ss_pred EEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 79999999999999999999999999874 334433 799999999999999999999999999999999999
Q ss_pred cCC
Q psy11609 73 YHD 75 (83)
Q Consensus 73 a~g 75 (83)
|..
T Consensus 127 a~~ 129 (143)
T 3egn_A 127 ARS 129 (143)
T ss_dssp CCC
T ss_pred CCC
Confidence 974
No 151
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=1.4e-18 Score=106.97 Aligned_cols=72 Identities=14% Similarity=0.236 Sum_probs=64.2
Q ss_pred eEeeeecCCcchhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCC
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHD 75 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g 75 (83)
+|||++++.+..+++|+..|++||+|.+| ++.....+||||+|.++++|++|+. |||..|.|++|.|..+..
T Consensus 10 ~l~V~nl~~~~t~~~l~~~F~~~G~v~~v-~~~~~~g~~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~~ 81 (94)
T 2e5g_A 10 SVFVSGFPRGVDSAQLSEYFLAFGPVASV-VMDKDKGVFAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPREQ 81 (94)
T ss_dssp EEEEECCCTTCCHHHHHHHGGGTSCEEEE-EECSSSCCEEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSCC
T ss_pred EEEEECCCCCCCHHHHHHHHHhcCCeEEE-EEcCCCCcEEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECCc
Confidence 89999999999999999999999999988 3332222299999999999999999 999999999999998873
No 152
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.77 E-value=1.1e-18 Score=117.94 Aligned_cols=76 Identities=14% Similarity=0.239 Sum_probs=72.0
Q ss_pred eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCCC
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDVD 77 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~~ 77 (83)
+|||+++..+..+++|++.|++||+|.+|+|+.+. ++|||||.|.++++|.+|+..|||..|.|++|.|..+..+.
T Consensus 127 ~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a~~~~ 206 (216)
T 2qfj_A 127 RIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPP 206 (216)
T ss_dssp EEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEECSSCS
T ss_pred EEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEecCCC
Confidence 79999999999999999999999999999999884 48999999999999999999999999999999999998654
No 153
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=1.5e-18 Score=112.03 Aligned_cols=71 Identities=15% Similarity=0.223 Sum_probs=67.5
Q ss_pred eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC---CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecC
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG---GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYH 74 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~---~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~ 74 (83)
+|||++|+.++.+++|++.|+.| .|.+|.|+.|. ++|||||+|.+++||++|+ .|||..|.||+|.|..+.
T Consensus 18 ~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~ 91 (109)
T 2dnn_A 18 YVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPAT 91 (109)
T ss_dssp EEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECC
T ss_pred EEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 79999999999999999999999 89999999876 6899999999999999999 799999999999999886
No 154
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.77 E-value=4.4e-19 Score=118.67 Aligned_cols=73 Identities=12% Similarity=0.020 Sum_probs=69.3
Q ss_pred eEeeeecCCcchhhHHHHHhccCCc---eeEEEEeccC---CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCC
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGK---VSWVKIIGQG---GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHD 75 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~---Itsv~V~~d~---~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g 75 (83)
+|||++|+.++.+++|++.|++||. |.+|+|+.|. ++|||||+|.++++|++|+. +||..|.|++|.|..+..
T Consensus 46 ~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V~~a~~ 124 (136)
T 2hgl_A 46 VVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEVFKSHR 124 (136)
T ss_dssp EEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEEEECCH
T ss_pred EEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEEEECCh
Confidence 7999999999999999999999999 8999999875 58999999999999999999 999999999999999864
No 155
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.77 E-value=1.1e-19 Score=112.73 Aligned_cols=73 Identities=21% Similarity=0.177 Sum_probs=67.5
Q ss_pred eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCC
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDV 76 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~ 76 (83)
+|||++|+.+..+++|++.|++||.|.+ .++.+. ++|||||.|.++++|++|++ |||..|.|++|.|..+...
T Consensus 19 ~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a~~~ 95 (101)
T 1fj7_A 19 NLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPKGR 95 (101)
T ss_dssp EEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECCSCC
T ss_pred EEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEcCCC
Confidence 7999999999999999999999999998 666653 68999999999999999998 9999999999999999854
No 156
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.77 E-value=1.3e-18 Score=104.64 Aligned_cols=68 Identities=15% Similarity=0.288 Sum_probs=64.9
Q ss_pred eEeeeecCCcchhhHHHHHhccC----C-------ceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCceecCeeeEE
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKH----G-------KVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDV 70 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kf----G-------~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V 70 (83)
||||++++.+..+++|++.|++| | +|.+++++.+ +|||||.|.++++|++|+ .|||..+.|++|.|
T Consensus 8 ~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~--kg~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V 84 (87)
T 2hzc_A 8 RLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD--KNFAFLEFRSVDETTQAM-AFDGIIFQGQSLKI 84 (87)
T ss_dssp EEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS--SSEEEEEESSHHHHHHHG-GGTTCEETTEECEE
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC--CcEEEEEcCCHHHHHHHH-hcCCCEECCeEEEE
Confidence 79999999999999999999999 8 9999999874 899999999999999999 99999999999999
Q ss_pred Ee
Q psy11609 71 SP 72 (83)
Q Consensus 71 ~~ 72 (83)
+.
T Consensus 85 ~r 86 (87)
T 2hzc_A 85 RR 86 (87)
T ss_dssp EC
T ss_pred eC
Confidence 74
No 157
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.77 E-value=2.5e-18 Score=111.48 Aligned_cols=75 Identities=20% Similarity=0.244 Sum_probs=70.8
Q ss_pred eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCC
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDV 76 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~ 76 (83)
||||++++.+..+++|++.|++||+|.+|+++.+. ++|||||.|.++++|++|++.+||..+.|++|.|..+...
T Consensus 4 ~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~ 82 (167)
T 1fxl_A 4 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPS 82 (167)
T ss_dssp EEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred eEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCCC
Confidence 79999999999999999999999999999999976 4699999999999999999999999999999999998743
No 158
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.77 E-value=1.1e-18 Score=113.95 Aligned_cols=74 Identities=12% Similarity=0.214 Sum_probs=69.7
Q ss_pred eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCC
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDV 76 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~ 76 (83)
+|||++++.+..+++|++.|++||+|.+|+|+.+. ++|||||.|.++++|++|++ +||..+.|++|.|..|+..
T Consensus 89 ~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~pk 166 (167)
T 2cjk_A 89 KIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAEPR 166 (167)
T ss_dssp EEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECCCC
T ss_pred eEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecCCC
Confidence 79999999999999999999999999999999874 58999999999999999997 8999999999999998753
No 159
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.76 E-value=1.4e-18 Score=113.70 Aligned_cols=73 Identities=18% Similarity=0.256 Sum_probs=68.1
Q ss_pred eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC---CceEEEEEeCCchHHHHHHhhcCCceec---CeeeEEEecC
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG---GDRYGLVCFKKADDAEKAILGSHEKHFF---GCKIDVSPYH 74 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~---~~g~afV~F~~pEdA~~A~~~~ng~~~~---g~~i~V~~a~ 74 (83)
+|||++++.+..+++|++.|++||+|.+|+++.+. ++|||||+|.++++|.+|++.|||..+. |++|.|..|+
T Consensus 97 ~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 97 KLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFAD 175 (175)
T ss_dssp EEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEEECC
T ss_pred eEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEEecC
Confidence 79999999999999999999999999999999985 4899999999999999999999998776 4999999875
No 160
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.76 E-value=2.3e-18 Score=114.28 Aligned_cols=73 Identities=21% Similarity=0.212 Sum_probs=67.0
Q ss_pred eEeeeecCCcchhhHHHHHhccCCceeEEEEeccCCceE-EEEEeCCchHHHHHHhhcCCceecC--eeeEEEecCCC
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRY-GLVCFKKADDAEKAILGSHEKHFFG--CKIDVSPYHDV 76 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~~~g~-afV~F~~pEdA~~A~~~~ng~~~~g--~~i~V~~a~g~ 76 (83)
.|||++|+....+++|++.|++||.|.+|+|+.. .|| |||.|.++++|++|+++|||..|+| ++|.|+.|..+
T Consensus 27 ~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~--~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~~ 102 (124)
T 2e5i_A 27 LLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR--NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPT 102 (124)
T ss_dssp EEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES--SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCSCS
T ss_pred EEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC--CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEecCC
Confidence 3789999999999999999999999999999764 486 9999999999999999999999988 79999999754
No 161
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.76 E-value=4e-19 Score=112.23 Aligned_cols=74 Identities=8% Similarity=0.047 Sum_probs=69.4
Q ss_pred CeEeeeecCCcchhhHHHHHhccCCc---eeEEEEeccC---CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecC
Q psy11609 1 MALFIYVVSDTSLKDGLYHEYKKHGK---VSWVKIIGQG---GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYH 74 (83)
Q Consensus 1 ~~lfv~k~~d~~~~d~L~~eF~kfG~---Itsv~V~~d~---~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~ 74 (83)
.+|||++|+.++.+++|++.|++||. |.+|+|+.+. ++|||||+|.++++|++|+. +||..+.|++|.|..+.
T Consensus 12 ~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~a~ 90 (107)
T 2lmi_A 12 FLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVEVYEIN 90 (107)
T ss_dssp CEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCCCEECC
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEEEEECC
Confidence 37999999999999999999999998 8999999876 68999999999999999999 99999999999999886
Q ss_pred C
Q psy11609 75 D 75 (83)
Q Consensus 75 g 75 (83)
.
T Consensus 91 ~ 91 (107)
T 2lmi_A 91 N 91 (107)
T ss_dssp H
T ss_pred H
Confidence 4
No 162
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.76 E-value=2.3e-18 Score=112.23 Aligned_cols=74 Identities=18% Similarity=0.223 Sum_probs=70.4
Q ss_pred eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCC
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHD 75 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g 75 (83)
||||++++.+..+++|++.|++||+|.+|+++.+. ++|||||.|.++++|++|++.+||..+.|++|.|..+..
T Consensus 5 ~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 82 (168)
T 1b7f_A 5 NLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARP 82 (168)
T ss_dssp EEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecCC
Confidence 79999999999999999999999999999999875 478999999999999999999999999999999998874
No 163
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.76 E-value=2.2e-18 Score=107.01 Aligned_cols=72 Identities=24% Similarity=0.356 Sum_probs=67.9
Q ss_pred eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC---CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCC
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG---GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHD 75 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~---~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g 75 (83)
||||++++.+..+++|++.|++||+|.+|+|+.+. ++|||||.|.++++|++|+. ||..+.|++|.|..+..
T Consensus 11 ~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~~ 85 (102)
T 2xs2_A 11 TVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPAIR 85 (102)
T ss_dssp EEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEEEE
T ss_pred EEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEECCc
Confidence 79999999999999999999999999999999976 58999999999999999998 99999999999988873
No 164
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.75 E-value=4.2e-18 Score=113.82 Aligned_cols=75 Identities=15% Similarity=0.145 Sum_probs=71.1
Q ss_pred eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCC
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDV 76 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~ 76 (83)
+|||++++.+..+++|++.|++||+|.+|+|+.+. ++|||||.|.++++|.+|+..|||..|.|++|.|..+..+
T Consensus 116 ~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 194 (198)
T 2yh0_A 116 KLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVG 194 (198)
T ss_dssp EEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEESCCC
T ss_pred EEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCC
Confidence 79999999999999999999999999999999875 4899999999999999999999999999999999999754
No 165
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.75 E-value=2.3e-18 Score=112.09 Aligned_cols=72 Identities=13% Similarity=0.188 Sum_probs=66.6
Q ss_pred eEeeeecCCcchhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCCC
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDVD 77 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~~ 77 (83)
||||+++ +..+++|++.|++||+|.+|+|. .++|||||.|.++++|++|+..|||..|.|++|.|..++...
T Consensus 41 ~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~--~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~~ 112 (121)
T 2bz2_A 41 TLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD--PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQP 112 (121)
T ss_dssp EEEEECS--SCCHHHHHHHHSTTCCCSCEEEE--TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCSSC
T ss_pred EEEEcCC--CCCHHHHHHHHHccCCEEEEEEe--CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCCCC
Confidence 7999984 68888999999999999999997 589999999999999999999999999999999999998543
No 166
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.75 E-value=2.9e-18 Score=132.15 Aligned_cols=75 Identities=16% Similarity=0.249 Sum_probs=71.6
Q ss_pred eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCC
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDV 76 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~ 76 (83)
||||++|+.++.+++|...|++||+|.+|+|+.+. ++|||||+|.++++|.+|+..|||..|.|++|.|+++++.
T Consensus 104 ~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a~~~ 182 (437)
T 3pgw_S 104 TLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERGR 182 (437)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEeCCC
Confidence 89999999999999999999999999999999874 5999999999999999999999999999999999999854
No 167
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.61 E-value=7.7e-20 Score=116.31 Aligned_cols=75 Identities=19% Similarity=0.187 Sum_probs=70.6
Q ss_pred eEeeeecCCcchhhHHHHHhccCCceeE--------EEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeE
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGKVSW--------VKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKID 69 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~Its--------v~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~ 69 (83)
+|||++++.+..+++|++.|++||+|.+ |+|+.+. ++|||||.|.++++|++|+..|||..|.|++|.
T Consensus 9 ~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 88 (116)
T 2lcw_A 9 TIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNPIK 88 (116)
Confidence 7999999999999999999999999999 8999874 589999999999999999999999999999999
Q ss_pred EEecCCC
Q psy11609 70 VSPYHDV 76 (83)
Q Consensus 70 V~~a~g~ 76 (83)
|..++..
T Consensus 89 V~~a~~~ 95 (116)
T 2lcw_A 89 VSFATRR 95 (116)
Confidence 9999844
No 168
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.75 E-value=4.1e-18 Score=111.06 Aligned_cols=72 Identities=19% Similarity=0.210 Sum_probs=68.1
Q ss_pred eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecC--eeeEEEec
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFG--CKIDVSPY 73 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g--~~i~V~~a 73 (83)
+|||.+++.+..+++|++.|++||+|.+++++.+. ++|||||.|.++++|.+|++.|||..+.| ++|.|..|
T Consensus 91 ~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 91 NLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp EEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred CEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEEeC
Confidence 79999999999999999999999999999999876 37999999999999999999999999988 99999875
No 169
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.74 E-value=3.8e-18 Score=117.39 Aligned_cols=74 Identities=14% Similarity=0.082 Sum_probs=70.8
Q ss_pred eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC---CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCC
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG---GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHD 75 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~---~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g 75 (83)
||||++|+.+..+++|++.|++||+|.+|.|+.+. ++|||||.|.++++|++|+..+||..|.|++|.|+.|..
T Consensus 90 ~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a~~ 166 (177)
T 2f3j_A 90 KLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVAS 166 (177)
T ss_dssp EEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEESS
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEecC
Confidence 79999999999999999999999999999999875 689999999999999999999999999999999999874
No 170
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.74 E-value=9.3e-19 Score=117.56 Aligned_cols=75 Identities=11% Similarity=0.040 Sum_probs=69.9
Q ss_pred eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC---CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCCCc
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG---GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDVDF 78 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~---~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~~~ 78 (83)
+|||++|+.++.+++|++.|++|| |.+|+|+.|. ++|||||+|.++++|++|+ .+|+..|.|++|.|..++.++.
T Consensus 48 ~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a~~~~~ 125 (139)
T 2hgn_A 48 CVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLNSTTGA 125 (139)
T ss_dssp CEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEECCCSCC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEECCCCCC
Confidence 799999999999999999999999 6789999876 6899999999999999999 8999999999999999986654
No 171
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.74 E-value=1e-17 Score=111.82 Aligned_cols=74 Identities=14% Similarity=0.249 Sum_probs=68.9
Q ss_pred eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCC
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDV 76 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~ 76 (83)
+|||++|+.+..+++|++.|++||+|.+|+|+.+. ++|||||.|.++++|++|+.. +|..+.|++|.|..+...
T Consensus 15 ~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~~~~~~ 92 (196)
T 1l3k_A 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKRAVSR 92 (196)
T ss_dssp EEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEEECCC-
T ss_pred EEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeeecccCc
Confidence 79999999999999999999999999999999975 488999999999999999976 999999999999998743
No 172
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.74 E-value=1.1e-17 Score=111.63 Aligned_cols=75 Identities=15% Similarity=0.301 Sum_probs=68.5
Q ss_pred eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCCC
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDVD 77 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~~ 77 (83)
+|||++++.+..+++|++.|++||+|.+|+|+.+. ++|||||.|.++++|.+|+.. +|..|.|++|.|..|...+
T Consensus 106 ~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a~~k~ 184 (196)
T 1l3k_A 106 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKALSKQ 184 (196)
T ss_dssp EEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEECC---
T ss_pred eEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEecCChh
Confidence 79999999999999999999999999999999875 489999999999999999976 8999999999999998543
No 173
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.74 E-value=6.7e-18 Score=114.14 Aligned_cols=75 Identities=11% Similarity=0.179 Sum_probs=69.3
Q ss_pred eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCC
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDV 76 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~ 76 (83)
||||++++.+..+++|++.|++||+|.+|+|+.+. ++|||||.|.++++|++|++.+||..|.|++|.|..+...
T Consensus 30 ~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~~~ 108 (216)
T 2qfj_A 30 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNI 108 (216)
T ss_dssp EEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCSCC
T ss_pred EEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCCCc
Confidence 79999999999999999999999999999999875 6999999999999999999999999999999999887644
No 174
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=5.3e-18 Score=108.10 Aligned_cols=75 Identities=13% Similarity=0.264 Sum_probs=66.0
Q ss_pred eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC-------CceEEEEEeCCchHHHHHHhhc---CCc--------ee
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG-------GDRYGLVCFKKADDAEKAILGS---HEK--------HF 63 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~-------~~g~afV~F~~pEdA~~A~~~~---ng~--------~~ 63 (83)
+|||++|+.+..+++|++.|++||+|. +.++.+. ++|||||+|.++++|++|+++| ||+ .+
T Consensus 10 ~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~~~G~~~~~~~~~~~ 88 (114)
T 2dnl_A 10 KVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLEEDGKLYLCVSSPTI 88 (114)
T ss_dssp CEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEEETTEEEEEECCSSS
T ss_pred EEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhhcCCcEEEeccCCCc
Confidence 799999999999999999999999999 8887753 5899999999999999999999 887 45
Q ss_pred cCeeeEEEecCCCC
Q psy11609 64 FGCKIDVSPYHDVD 77 (83)
Q Consensus 64 ~g~~i~V~~a~g~~ 77 (83)
.++++.|.+|.-.+
T Consensus 89 ~~~~~~v~p~~~~d 102 (114)
T 2dnl_A 89 KDKPVQIRPWNLSD 102 (114)
T ss_dssp CSEEEEEECCCCCC
T ss_pred CCCeeeccCCcccC
Confidence 67888888887433
No 175
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=8.5e-18 Score=104.10 Aligned_cols=72 Identities=18% Similarity=0.288 Sum_probs=65.2
Q ss_pred eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCC
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDV 76 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~ 76 (83)
||||++|+.+..+++|++.|++|+ +|+++.+. ++|||||+|.++++|++|++.|||..|.|++|.|..+...
T Consensus 17 ~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~ 92 (102)
T 2fc8_A 17 TLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPK 92 (102)
T ss_dssp SEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred EEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecCC
Confidence 799999999999999999999886 46666654 4799999999999999999999999999999999999853
No 176
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.73 E-value=6.7e-18 Score=110.40 Aligned_cols=75 Identities=17% Similarity=0.208 Sum_probs=69.2
Q ss_pred eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC------CceEEEEEeCCchHHHHHHhhcCCceec---CeeeEEEe
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG------GDRYGLVCFKKADDAEKAILGSHEKHFF---GCKIDVSP 72 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~------~~g~afV~F~~pEdA~~A~~~~ng~~~~---g~~i~V~~ 72 (83)
||||++|+.+..+++|++.|++||+|.+|+|+.+. ++|||||.|.++++|++|++.+||..+. ++++.|..
T Consensus 5 ~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~~~~ 84 (175)
T 3nmr_A 5 KMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQMKP 84 (175)
T ss_dssp EEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEEEE
T ss_pred EEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceEEcc
Confidence 79999999999999999999999999999999984 5789999999999999999999998876 78999988
Q ss_pred cCCC
Q psy11609 73 YHDV 76 (83)
Q Consensus 73 a~g~ 76 (83)
++..
T Consensus 85 ~~~~ 88 (175)
T 3nmr_A 85 ADSE 88 (175)
T ss_dssp CGGG
T ss_pred cccc
Confidence 7743
No 177
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.73 E-value=3.7e-18 Score=115.15 Aligned_cols=73 Identities=18% Similarity=0.229 Sum_probs=69.7
Q ss_pred eEeeeecCC-cchhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCC
Q psy11609 2 ALFIYVVSD-TSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHD 75 (83)
Q Consensus 2 ~lfv~k~~d-~~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g 75 (83)
+|||++++. +..+++|++.|++||+|.+|+|+.+. +|||||.|.++++|++|++.+||..+.|++|.|..+..
T Consensus 5 ~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~ 78 (198)
T 1qm9_A 5 VLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKH 78 (198)
T ss_dssp EEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCC
T ss_pred EEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecC
Confidence 799999999 89999999999999999999999876 89999999999999999999999999999999998874
No 178
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.73 E-value=1.5e-17 Score=117.66 Aligned_cols=74 Identities=15% Similarity=0.205 Sum_probs=69.6
Q ss_pred eEeeeecCCcchhhHHH----HHhccCCceeEEEEeccC-CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCC
Q psy11609 2 ALFIYVVSDTSLKDGLY----HEYKKHGKVSWVKIIGQG-GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHD 75 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~----~eF~kfG~Itsv~V~~d~-~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g 75 (83)
||||++|+.+..+++|+ +.|++||+|.+|+|+++. ++|||||+|.++++|++|++.|||..|.|++|.|..+..
T Consensus 11 ~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 89 (282)
T 3pgw_A 11 TIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYAKT 89 (282)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEEecc
Confidence 79999999999999965 899999999999999865 689999999999999999999999999999999999864
No 179
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.72 E-value=7.8e-18 Score=117.42 Aligned_cols=73 Identities=18% Similarity=0.229 Sum_probs=69.8
Q ss_pred eEeeeecCC-cchhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCC
Q psy11609 2 ALFIYVVSD-TSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHD 75 (83)
Q Consensus 2 ~lfv~k~~d-~~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g 75 (83)
||||++++. +..+++|++.|++||+|.+|+|+.+. +|||||.|.++++|++|++.+||..+.|++|.|..+..
T Consensus 36 ~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~ 109 (229)
T 2adc_A 36 VLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKH 109 (229)
T ss_dssp EEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECCSC
T ss_pred EEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecC
Confidence 799999999 89999999999999999999999976 89999999999999999999999999999999998874
No 180
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.72 E-value=2.4e-17 Score=117.05 Aligned_cols=74 Identities=18% Similarity=0.225 Sum_probs=69.9
Q ss_pred eEeeeecCCc-chhhHHHHHhccCCceeEEEEeccC-----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCC
Q psy11609 2 ALFIYVVSDT-SLKDGLYHEYKKHGKVSWVKIIGQG-----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHD 75 (83)
Q Consensus 2 ~lfv~k~~d~-~~~d~L~~eF~kfG~Itsv~V~~d~-----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g 75 (83)
+|||.+++.+ ..+++|++.|++||.|.+|+|+.+. ++|||||.|.++++|.+|+ .|||..|.|++|.|..++.
T Consensus 212 ~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~V~~a~~ 290 (292)
T 2ghp_A 212 EIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREISVSLADK 290 (292)
T ss_dssp EEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEEEEECCC
T ss_pred eEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEEEEEecC
Confidence 7999999999 9999999999999999999999864 4899999999999999999 9999999999999999985
Q ss_pred C
Q psy11609 76 V 76 (83)
Q Consensus 76 ~ 76 (83)
.
T Consensus 291 k 291 (292)
T 2ghp_A 291 K 291 (292)
T ss_dssp C
T ss_pred C
Confidence 4
No 181
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.72 E-value=1.8e-17 Score=109.40 Aligned_cols=73 Identities=16% Similarity=0.146 Sum_probs=66.5
Q ss_pred eEeeeecCCcchhhHHHHHhccCCceeEEEEecc-CCceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCC
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQ-GGDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDV 76 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d-~~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~ 76 (83)
+|||++++.+..+++|++.|++||.|..+ ..+ .++|||||+|.++++|.+|+..|||..|.|++|.|..|...
T Consensus 101 ~l~v~nlp~~~t~~~l~~~F~~~g~v~~~--~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 101 TLLAKNLSFNITEDELKEVFEDALEIRLV--SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEK 174 (175)
T ss_dssp EEEEESCCSSCCHHHHHHHCTTCSEEEEE--CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECSSC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCeEEEe--cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecCCC
Confidence 79999999999999999999999999876 222 37999999999999999999999999999999999999743
No 182
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=8.2e-18 Score=102.19 Aligned_cols=73 Identities=16% Similarity=0.132 Sum_probs=63.5
Q ss_pred eEeeeecCCcchhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCCC
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDVD 77 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~~ 77 (83)
||||++++.+..+++|++.|++||+|.+|+|+.+ ++|||||+|.++++|++|... +..+.|++|.|..+....
T Consensus 7 ~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~a~~~~ 79 (88)
T 1wf0_A 7 GVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-FRAFAFVTFADDQIAQSLCGE--DLIIKGISVHISNAEPKH 79 (88)
T ss_dssp EEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-CCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEECCCCCC
T ss_pred EEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-CCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEecCCCC
Confidence 7999999999999999999999999999999886 899999999999999865322 345599999999887543
No 183
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.72 E-value=1.2e-17 Score=121.51 Aligned_cols=71 Identities=15% Similarity=0.251 Sum_probs=67.8
Q ss_pred eEeeeecCCcc---------hhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCcee---------
Q psy11609 2 ALFIYVVSDTS---------LKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHF--------- 63 (83)
Q Consensus 2 ~lfv~k~~d~~---------~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~--------- 63 (83)
||||++|+.+. ++++|+..|++||+|.+|+|+. ++|||||+|.+.++|+.|+++|||+.|
T Consensus 136 tLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~--~kG~AFV~F~~~~~Ae~A~~am~g~~l~~~~~~e~~ 213 (240)
T 3u1l_A 136 TLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE--SKNCGFVKFKYQANAEFAKEAMSNQTLLLPSDKEWD 213 (240)
T ss_dssp EEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG--GGTEEEEEESSHHHHHHHHHHHTTCCCCCTTSTTGG
T ss_pred eeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC--CCCEEEEEeCCHHHHHHHHHHhCCCEEecccccccc
Confidence 89999999887 7899999999999999999996 689999999999999999999999999
Q ss_pred ---cCeeeEEEecC
Q psy11609 64 ---FGCKIDVSPYH 74 (83)
Q Consensus 64 ---~g~~i~V~~a~ 74 (83)
.|++|.|..|.
T Consensus 214 ~~~~gr~L~V~wA~ 227 (240)
T 3u1l_A 214 DRREGTGLLVKWAN 227 (240)
T ss_dssp GGGGSCCCEEEECC
T ss_pred ccCCCCEEEEEEcc
Confidence 89999999987
No 184
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.72 E-value=2e-17 Score=107.20 Aligned_cols=72 Identities=22% Similarity=0.297 Sum_probs=66.7
Q ss_pred eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCee--eEEEec
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCK--IDVSPY 73 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~--i~V~~a 73 (83)
+|||++++.+..+++|++.|++||+|.+++++.+. ++|||||.|.++++|.+|++.|||..+.|++ |.|..|
T Consensus 90 ~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 90 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFA 167 (167)
T ss_dssp EEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred cEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEEeC
Confidence 69999999999999999999999999999999876 4899999999999999999999999999964 888765
No 185
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.71 E-value=2.9e-17 Score=116.26 Aligned_cols=76 Identities=13% Similarity=0.098 Sum_probs=70.8
Q ss_pred eEeeeecCCc-chhhHHHHHhccCCceeEEEEeccC---CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCCC
Q psy11609 2 ALFIYVVSDT-SLKDGLYHEYKKHGKVSWVKIIGQG---GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDVD 77 (83)
Q Consensus 2 ~lfv~k~~d~-~~~d~L~~eF~kfG~Itsv~V~~d~---~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~~ 77 (83)
+|||.+++.+ +.+++|++.|++||.|.+|+|+.+. ++|||||.|.++++|.+|+..|||..|.|++|.|..++..+
T Consensus 186 ~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 265 (284)
T 3smz_A 186 CLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSFCAPGP 265 (284)
T ss_dssp EEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECSSCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCSSS
T ss_pred EEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEEecCCC
Confidence 7999999999 5889999999999999999999975 58999999999999999999999999999999999998544
No 186
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.71 E-value=3e-17 Score=116.11 Aligned_cols=72 Identities=13% Similarity=0.070 Sum_probs=68.0
Q ss_pred eEeeeecCCcchhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCceec-CeeeEEEecC
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFF-GCKIDVSPYH 74 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~-g~~i~V~~a~ 74 (83)
+|||+++..+..+++|++.|++||.|.+|+|+.+. +|||||.|.++++|.+|+..|||..|. |++|.|+.+.
T Consensus 209 ~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~-~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 209 ILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR-HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred EEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC-CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 69999999999999999999999999999999654 689999999999999999999999999 9999999874
No 187
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=8.1e-18 Score=110.85 Aligned_cols=73 Identities=11% Similarity=0.059 Sum_probs=67.1
Q ss_pred CeEeeeecCCcchhhHHHHHhccCCce----eEEEEeccC---CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEec
Q psy11609 1 MALFIYVVSDTSLKDGLYHEYKKHGKV----SWVKIIGQG---GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPY 73 (83)
Q Consensus 1 ~~lfv~k~~d~~~~d~L~~eF~kfG~I----tsv~V~~d~---~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a 73 (83)
.+|||++|+.++.+++|++.|++||+| .+|.|+.+. ++|||||+|.++++|++|+.. ||+.|.||+|.|..+
T Consensus 24 ~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~V~~a 102 (123)
T 2dha_A 24 VIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIELFRS 102 (123)
T ss_dssp CEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEECCEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEEEC
Confidence 379999999999999999999999986 689999865 589999999999999999986 999999999999887
Q ss_pred C
Q psy11609 74 H 74 (83)
Q Consensus 74 ~ 74 (83)
.
T Consensus 103 ~ 103 (123)
T 2dha_A 103 T 103 (123)
T ss_dssp C
T ss_pred C
Confidence 5
No 188
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.70 E-value=4.8e-17 Score=112.96 Aligned_cols=73 Identities=12% Similarity=0.102 Sum_probs=67.4
Q ss_pred eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC---CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCC
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG---GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHD 75 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~---~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g 75 (83)
||||++++.++.+++|.+.|++||+|.+|.|+++. ++|||||+|.++++|++|+..++ ..+.|++|.|..++.
T Consensus 111 ~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~-~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 111 SVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPG-QKYKETDLLILFKDD 186 (193)
T ss_dssp EEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTT-CEETTEECEEEETTT
T ss_pred EEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCC-CeECCEEEEEEEhHH
Confidence 79999999999999999999999999999999865 58999999999999999997765 589999999998764
No 189
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.70 E-value=2.4e-17 Score=109.36 Aligned_cols=72 Identities=14% Similarity=0.032 Sum_probs=66.1
Q ss_pred eEeeeecCCcchhhHHHHHhccCCcee--EEEEeccC---CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCC
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGKVS--WVKIIGQG---GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHD 75 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~It--sv~V~~d~---~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g 75 (83)
+|||++|+.++.+++|++.|++|| |. +|+|+.|. ++|||||+|.++|+|++|+.. +++.|.||+|.|..+..
T Consensus 44 ~lfVgnLp~~~te~dL~~~F~~~~-i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~gR~I~V~~a~~ 120 (126)
T 2hgm_A 44 FVRLRGLPFGCTKEEIVQFFSGLE-IVPNGITLPVDPEGKITGEAFVQFASQELAEKALGK-HKERIGHRYIEVFKSSQ 120 (126)
T ss_dssp EEEEECCCTTCCHHHHHHHTTTSC-EEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTT-TTCCBTTBCCCCEEECH
T ss_pred EEEEeCCCCCCCHHHHHHHHhcCC-ceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHH-CCCEECCEEEEEEECCH
Confidence 799999999999999999999995 66 89999876 689999999999999999985 78999999999998863
No 190
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=3.2e-17 Score=106.10 Aligned_cols=68 Identities=24% Similarity=0.276 Sum_probs=61.2
Q ss_pred e-EeeeecCCcchhhH----HHHHhccC-CceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCC
Q psy11609 2 A-LFIYVVSDTSLKDG----LYHEYKKH-GKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHD 75 (83)
Q Consensus 2 ~-lfv~k~~d~~~~d~----L~~eF~kf-G~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g 75 (83)
| |||.+|+.+..++. |++.|++| |+|.+| ..|+|||.|.+.|+|++|+++|||..++||||+|+.|+.
T Consensus 10 T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V------tgG~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~A~~ 83 (96)
T 2diu_A 10 TLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI------TGCSAILRFINQDSAERAQKRMENEDVFGNRIIVSFTPK 83 (96)
T ss_dssp EEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC------CTTCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEESSCC
T ss_pred eEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE------ecCEEEEEECCHHHHHHHHHHhcCCccCCceEEEEecCC
Confidence 5 88999998887666 77899999 599988 239999999999999999999999999999999999984
No 191
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.69 E-value=1.3e-16 Score=113.24 Aligned_cols=73 Identities=19% Similarity=0.235 Sum_probs=68.8
Q ss_pred eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC--CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCC
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG--GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHD 75 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~--~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g 75 (83)
||||++|+.+..+++|++.|++||+|.+|+|+.+. ++|||||.|.++++|++|+ .+||..+.|++|.|..++.
T Consensus 43 ~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~A~~A~-~~~~~~~~g~~i~v~~~~~ 117 (292)
T 2ghp_A 43 TVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAI-TKTHKVVGQNEIIVSHLTE 117 (292)
T ss_dssp EEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTSSSEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEECCS
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEEECCHHHHHHHH-HhCCcEeCCcEEEEEECCC
Confidence 89999999999999999999999999999999976 5899999999999999999 5999999999999988753
No 192
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.68 E-value=7.5e-17 Score=105.21 Aligned_cols=72 Identities=21% Similarity=0.294 Sum_probs=66.6
Q ss_pred eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCC
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHD 75 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g 75 (83)
+|||++|+.+..+++|++.|++||+|.+|+|+.+. ++|||||.|.++++|++|+.. +..+.|++|.|..+..
T Consensus 5 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~~~ 80 (167)
T 2cjk_A 5 KMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRAIP 80 (167)
T ss_dssp EEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEECCC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEcccccccc
Confidence 79999999999999999999999999999999875 589999999999999999985 5799999999988753
No 193
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.68 E-value=3.9e-17 Score=110.12 Aligned_cols=73 Identities=15% Similarity=0.238 Sum_probs=68.7
Q ss_pred eEeeeecCCcchhhHHHHHhccCC-ceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCceec-CeeeEEEecCC
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHG-KVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFF-GCKIDVSPYHD 75 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG-~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~-g~~i~V~~a~g 75 (83)
+|||++++.+..+++|++.|++|| +|.+|+|+.+ ++|||||.|.++++|.+|+..|||..+. |++|.|..+..
T Consensus 122 ~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~-~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~ 196 (198)
T 1qm9_A 122 TLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKS 196 (198)
T ss_dssp EEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST-TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECC
T ss_pred EEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC-CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeecc
Confidence 699999999999999999999999 9999999775 4899999999999999999999999999 99999998864
No 194
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.68 E-value=1.2e-16 Score=113.49 Aligned_cols=71 Identities=14% Similarity=0.116 Sum_probs=68.2
Q ss_pred eEeeeecCCcchhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecC
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYH 74 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~ 74 (83)
||||++++.+..+++|++.|++||+|.+|++++ ++|||||.|.++++|++|+..+||..+.|++|.|..+.
T Consensus 24 ~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~--~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~ 94 (261)
T 3sde_A 24 RLFVGNLPTDITEEDFKRLFERYGEPSEVFINR--DRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFAT 94 (261)
T ss_dssp EEEEESCCTTCCHHHHHHHTGGGCCCSEEEEET--TTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred EEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeC--CCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeecc
Confidence 799999999999999999999999999999976 58999999999999999999999999999999999886
No 195
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.68 E-value=1.2e-16 Score=108.96 Aligned_cols=74 Identities=18% Similarity=0.214 Sum_probs=67.3
Q ss_pred CeEeeeec----CCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCC----chH----HHHHHh--hcCCce
Q psy11609 1 MALFIYVV----SDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKK----ADD----AEKAIL--GSHEKH 62 (83)
Q Consensus 1 ~~lfv~k~----~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~----pEd----A~~A~~--~~ng~~ 62 (83)
|.|||+++ +.++.++.|+..|+.||+|.+|+++.|+ |+|||||.|.+ |++ |.+|+. .+||..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 57999999 9999999999999999999999999998 69999999997 777 799988 889999
Q ss_pred ecCeeeEEEecC
Q psy11609 63 FFGCKIDVSPYH 74 (83)
Q Consensus 63 ~~g~~i~V~~a~ 74 (83)
|.|++|.|.+-.
T Consensus 83 I~Gr~irV~ln~ 94 (136)
T 2j8a_A 83 IMGFKFEVILNK 94 (136)
T ss_dssp ETTEEEEEEECC
T ss_pred ecCcEEEEEECc
Confidence 999999999865
No 196
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.67 E-value=2.1e-16 Score=111.86 Aligned_cols=76 Identities=13% Similarity=0.079 Sum_probs=71.4
Q ss_pred eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCCC
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDVD 77 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~~ 77 (83)
+|||++++.+..+++|++.|++||+|.+|+|+.+. ++|||||.|.++++|.+|+..+||..+.|++|.|..+....
T Consensus 97 ~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~~~~ 176 (284)
T 3smz_A 97 LLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTDAGQ 176 (284)
T ss_dssp EEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCGGG
T ss_pred EEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCC
Confidence 79999999999999999999999999999999876 48999999999999999999999999999999999988543
No 197
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.66 E-value=2e-16 Score=110.22 Aligned_cols=73 Identities=15% Similarity=0.238 Sum_probs=68.6
Q ss_pred eEeeeecCCcchhhHHHHHhccCC-ceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCceec-CeeeEEEecCC
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHG-KVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFF-GCKIDVSPYHD 75 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG-~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~-g~~i~V~~a~g 75 (83)
+|||++++.+..+++|++.|++|| +|.+|+|+.+ ++|||||+|.++++|.+|+..|||..+. |++|.|..+.-
T Consensus 153 ~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~-~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~ 227 (229)
T 2adc_A 153 TLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKS 227 (229)
T ss_dssp EEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS-STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSS
T ss_pred EEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC-CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecC
Confidence 699999999999999999999999 9999999764 5899999999999999999999999999 99999998864
No 198
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=99.66 E-value=1.3e-16 Score=110.80 Aligned_cols=70 Identities=26% Similarity=0.216 Sum_probs=62.7
Q ss_pred eecCCcchhhHHHHHhccCCceeEEEEecc--------CCceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCC
Q psy11609 6 YVVSDTSLKDGLYHEYKKHGKVSWVKIIGQ--------GGDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHD 75 (83)
Q Consensus 6 ~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d--------~~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g 75 (83)
....++.++++|+++|++||+|.+|+|+.+ .++|++||.|+++++|++|+++|||+++.||+|.|+.++.
T Consensus 135 ~~e~~~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~ 212 (222)
T 3dxb_A 135 PKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQ 212 (222)
T ss_dssp GGGCCTTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCH
T ss_pred HHHHHHHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCH
Confidence 345567788899999999999999999854 3579999999999999999999999999999999999873
No 199
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.66 E-value=3.3e-16 Score=102.52 Aligned_cols=72 Identities=17% Similarity=0.299 Sum_probs=66.7
Q ss_pred eEeeeecCCcchhhHHHHHhccC----C-------ceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCceecCeeeEE
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKH----G-------KVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDV 70 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kf----G-------~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V 70 (83)
+|||++++.+..+++|++.|++| | +|.++++.. ++|||||.|.++|+|++|+ .+||..+.|++|.|
T Consensus 6 ~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~--~~g~afV~f~~~~~A~~A~-~~~~~~~~g~~i~v 82 (172)
T 2g4b_A 6 RLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ--DKNFAFLEFRSVDETTQAM-AFDGIIFQGQSLKI 82 (172)
T ss_dssp EEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEET--TTTEEEEEESSHHHHHHHG-GGTTCEETTEECEE
T ss_pred EEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecC--CCCEEEEEeCCHHHHHHHH-HhCCcEecCceeee
Confidence 79999999999999999999999 6 888888865 6899999999999999999 99999999999999
Q ss_pred EecCCC
Q psy11609 71 SPYHDV 76 (83)
Q Consensus 71 ~~a~g~ 76 (83)
..+...
T Consensus 83 ~~~~~~ 88 (172)
T 2g4b_A 83 RRPHDY 88 (172)
T ss_dssp ECCSSC
T ss_pred cCCccc
Confidence 987743
No 200
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.65 E-value=2.5e-16 Score=111.84 Aligned_cols=76 Identities=20% Similarity=0.227 Sum_probs=69.2
Q ss_pred eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC---CceEEEEEeCCchHHHHHHhhcC-Cceec---CeeeEEEecC
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG---GDRYGLVCFKKADDAEKAILGSH-EKHFF---GCKIDVSPYH 74 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~---~~g~afV~F~~pEdA~~A~~~~n-g~~~~---g~~i~V~~a~ 74 (83)
+|||++++.+..+++|++.|++||+|.+|+|+.+. ++|||||.|.++++|.+|+..|| |..+. |++|.|.++.
T Consensus 98 ~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~~~~ 177 (261)
T 3sde_A 98 ALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPME 177 (261)
T ss_dssp EEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEEEECC
T ss_pred cccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEEeecc
Confidence 79999999999999999999999999999999985 58999999999999999999995 55555 9999999998
Q ss_pred CCC
Q psy11609 75 DVD 77 (83)
Q Consensus 75 g~~ 77 (83)
..+
T Consensus 178 ~~~ 180 (261)
T 3sde_A 178 QFD 180 (261)
T ss_dssp CEE
T ss_pred ccC
Confidence 654
No 201
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.65 E-value=5.6e-16 Score=103.44 Aligned_cols=71 Identities=17% Similarity=0.308 Sum_probs=65.1
Q ss_pred eEeeeecCCcchhhHHHHHhccC----C-------ceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCceecCeeeEE
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKH----G-------KVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDV 70 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kf----G-------~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V 70 (83)
||||++|+.+..+++|++.|++| | .|.++++.. ++|||||.|.++++|++|+ .+||..|.|++|.|
T Consensus 6 ~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~~--~~g~afV~F~~~~~A~~Al-~l~g~~~~g~~i~v 82 (198)
T 2yh0_A 6 RLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ--DKNFAFLEFRSVDETTQAM-AFDGIIFQGQSLKI 82 (198)
T ss_dssp EEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEET--TTTEEEEEESCSHHHHHHG-GGTTEEETTEEEEE
T ss_pred EEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEecC--CCCEEEEEeCCHHHHHHHH-HhcCCEEcCceEEE
Confidence 89999999999999999999999 5 677777654 6899999999999999999 89999999999999
Q ss_pred EecCC
Q psy11609 71 SPYHD 75 (83)
Q Consensus 71 ~~a~g 75 (83)
..+..
T Consensus 83 ~~~~~ 87 (198)
T 2yh0_A 83 RRPHD 87 (198)
T ss_dssp ECCCC
T ss_pred eCCCC
Confidence 98864
No 202
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.64 E-value=3e-16 Score=109.48 Aligned_cols=72 Identities=11% Similarity=0.110 Sum_probs=65.8
Q ss_pred eEeeeecCCcchhhHHHHHhccCCce--eEEEEeccC--CceEEEEEeCCchHHHHHHhhcCCceecCe----eeEEEec
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGKV--SWVKIIGQG--GDRYGLVCFKKADDAEKAILGSHEKHFFGC----KIDVSPY 73 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~I--tsv~V~~d~--~~g~afV~F~~pEdA~~A~~~~ng~~~~g~----~i~V~~a 73 (83)
||||.+|+++..+++|++.|++||.| ++|+|+.+. ++|||||+|.++|+|.+|+..|||..|.|+ |+.|-++
T Consensus 125 ~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 125 VLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGKSERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp EEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCCSSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEEE
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCCCCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEec
Confidence 69999999999999999999999999 899999875 469999999999999999999999999887 6776553
No 203
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=8.3e-16 Score=98.29 Aligned_cols=65 Identities=18% Similarity=0.116 Sum_probs=58.0
Q ss_pred CcchhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCCC
Q psy11609 10 DTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDVD 77 (83)
Q Consensus 10 d~~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~~ 77 (83)
++..+++|++.|++||+|.+|.|++ .++|||||+|.++++|++|++.++| +.|++|.|..+..+.
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~~-~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a~~~~ 91 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLSS-KKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWLEGQP 91 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEES-SSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECSSCCC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEcc-CCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEccCCC
Confidence 4567888999999999999999984 5899999999999999999999766 689999999988554
No 204
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.63 E-value=5.5e-16 Score=117.62 Aligned_cols=71 Identities=13% Similarity=0.231 Sum_probs=63.5
Q ss_pred eEeeee--cCCcchhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCceec---Ce--eeEEEecC
Q psy11609 2 ALFIYV--VSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFF---GC--KIDVSPYH 74 (83)
Q Consensus 2 ~lfv~k--~~d~~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~---g~--~i~V~~a~ 74 (83)
+|||++ ++.++.+++|++.|++||+|.+|++.. ++|||||+|+++|||++|+++|||+.+. |+ +|+|..++
T Consensus 20 ~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~--~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ly~~~~~ 97 (345)
T 3tht_A 20 SLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP--NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLNFVE 97 (345)
T ss_dssp EEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT--TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEEECS
T ss_pred EEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC--CCCEEEEEECCHHHHHHHHHHhCCCccccccCCceEEEEEEee
Confidence 799988 678999999999999999999987754 7999999999999999999999999884 44 79998875
No 205
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.63 E-value=1e-16 Score=105.76 Aligned_cols=74 Identities=20% Similarity=0.231 Sum_probs=65.0
Q ss_pred eEeeeecCCcchhhHHHHHhccCCceeEEEEecc---CCceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCC
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQ---GGDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDV 76 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d---~~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~ 76 (83)
+|||++|+.+..+++|++.|++||.|.++.|... .++|||||.|.++++|++|+ +|||..+.|++|.|..+...
T Consensus 15 ~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~v~~~~~~ 91 (175)
T 1fje_B 15 NLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKAL-ELTGLKVFGNEIKLEKPKGR 91 (175)
T ss_dssp EEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHH-HGGGEEETTEEEEEECCCCS
T ss_pred EEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHH-hcCCCEeCCeEEEEecCCCc
Confidence 7999999999999999999999999876333221 26899999999999999999 69999999999999998853
No 206
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.50 E-value=8.4e-14 Score=89.24 Aligned_cols=69 Identities=17% Similarity=0.314 Sum_probs=59.9
Q ss_pred eEeeeecC--------CcchhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEec
Q psy11609 2 ALFIYVVS--------DTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPY 73 (83)
Q Consensus 2 ~lfv~k~~--------d~~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a 73 (83)
|++|.-.+ |+.+-.+|.+.|+.||+|.+|+|+.|. +||+|++.+.|.+|++ |||..++||+|+|.++
T Consensus 9 tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~----~fVtF~d~~sAlaAi~-mnG~~v~Gr~LkV~lk 83 (91)
T 2dnr_A 9 TVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK----MWVTFLEGSSALNVLS-LNGKELLNRTITIALK 83 (91)
T ss_dssp EEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS----EEEEESSHHHHHHGGG-GTTCEETTEEEEEEEC
T ss_pred eEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC----EEEEECChHHHHHHHh-cCCeEeCCeEEEEEeC
Confidence 56665543 445557799999999999999999875 9999999999999998 9999999999999998
Q ss_pred CC
Q psy11609 74 HD 75 (83)
Q Consensus 74 ~g 75 (83)
..
T Consensus 84 t~ 85 (91)
T 2dnr_A 84 SP 85 (91)
T ss_dssp CC
T ss_pred CC
Confidence 63
No 207
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.36 E-value=1.6e-12 Score=86.43 Aligned_cols=73 Identities=15% Similarity=0.265 Sum_probs=66.7
Q ss_pred eEeeeecCCc-chhhHHHHHhccCCceeEEEEeccCCceEEEEEeCC-chHHHHHHhhcC--CceecCeeeEEEecCCC
Q psy11609 2 ALFIYVVSDT-SLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKK-ADDAEKAILGSH--EKHFFGCKIDVSPYHDV 76 (83)
Q Consensus 2 ~lfv~k~~d~-~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~-pEdA~~A~~~~n--g~~~~g~~i~V~~a~g~ 76 (83)
-|+|++++++ +.+++|+..|++||+|..|.++.+.. .|||.|.+ +++|.+|+..+| |..|.|..+.+++..|.
T Consensus 20 il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~--tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~evL~Ge 96 (121)
T 1owx_A 20 LLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK--EGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWEVLEGE 96 (121)
T ss_dssp EEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS--EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEEECCHH
T ss_pred EEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC--EEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEEECCCH
Confidence 4899999999 99999999999999999999998766 59999999 689999999995 78999999999998873
No 208
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.35 E-value=1.4e-12 Score=84.11 Aligned_cols=67 Identities=18% Similarity=0.202 Sum_probs=58.1
Q ss_pred eEeeeecC---------CcchhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEe
Q psy11609 2 ALFIYVVS---------DTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSP 72 (83)
Q Consensus 2 ~lfv~k~~---------d~~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~ 72 (83)
|++|.-++ |+.+-.+|.+.|+.||+|..|++..|. +||+|++.++|.+|+. |||..+.||+|+|.+
T Consensus 17 Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~----~fVtF~d~~sAl~AI~-ldG~~v~Gr~L~V~~ 91 (95)
T 1ufw_A 17 TVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ----MLVTFADSHSALSVLD-VDGMKVKGRAVKISG 91 (95)
T ss_dssp EEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE----EEEECSCSHHHHHHHH-GGGSEETTEEEEEEC
T ss_pred eEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc----EEEEEcChHHHHHHHh-cCCeeeCCeEEEEec
Confidence 66776543 444556799999999999999999986 9999999999999998 999999999999986
Q ss_pred c
Q psy11609 73 Y 73 (83)
Q Consensus 73 a 73 (83)
-
T Consensus 92 k 92 (95)
T 1ufw_A 92 P 92 (95)
T ss_dssp C
T ss_pred c
Confidence 3
No 209
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.40 E-value=2.7e-06 Score=55.44 Aligned_cols=77 Identities=14% Similarity=0.152 Sum_probs=62.6
Q ss_pred eEeeeecCCcc-----hhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCC
Q psy11609 2 ALFIYVVSDTS-----LKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDV 76 (83)
Q Consensus 2 ~lfv~k~~d~~-----~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~ 76 (83)
||++..+..+. ++..++..|..|+++.+-...+ |=|=..|.|.+||+|.+|...++|..|.|++|+|=.+|..
T Consensus 7 tLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lk--SFRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YFgq~~ 84 (104)
T 1wey_A 7 GLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFK--SFKRVRINFSNPLSAADARLRLHKTEFLGKEMKLYFAQTL 84 (104)
T ss_dssp EEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEET--TTTEEEEECSSTTHHHHHHHTSTTSEETTEECEEECCCCS
T ss_pred eEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecC--cceEEEEEeCChHHHHHHHHHhccceecCceeEEEecCCC
Confidence 67777774433 3456788999999999866555 6555699999999999999999999999999999999965
Q ss_pred Cccc
Q psy11609 77 DFEL 80 (83)
Q Consensus 77 ~~e~ 80 (83)
+.++
T Consensus 85 ~~~~ 88 (104)
T 1wey_A 85 HIGS 88 (104)
T ss_dssp SCCS
T ss_pred CCcc
Confidence 5443
No 210
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.01 E-value=2e-05 Score=52.34 Aligned_cols=69 Identities=12% Similarity=0.179 Sum_probs=58.6
Q ss_pred eEeeeecCCcchhhHHHHHhccC-----CceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEe
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKH-----GKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSP 72 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kf-----G~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~ 72 (83)
||=+..++|+..+.-++...++| |+|+++.+.. ..+=|+|.|.+...|-+|.=++||..|.||+|+|..
T Consensus 23 tiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~p--DH~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~gT 96 (117)
T 2l9w_A 23 LICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVS--DFNGAIIIFRDSKFAAKMLMILNGSQFQGKVIRSGT 96 (117)
T ss_dssp CEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEET--TTTEEEEECSCHHHHHHHHHHHSSEEETTEEEEEEC
T ss_pred EEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEec--CCCceEEEEccchhhHHHHhhcCCeeecCeEEEecC
Confidence 34455677777777799999999 9999887766 466799999999999999999999999999999864
No 211
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=97.69 E-value=2.7e-05 Score=50.64 Aligned_cols=33 Identities=21% Similarity=0.009 Sum_probs=28.4
Q ss_pred EEEEeccC--CceEEEEEeCCchHHHHHHhhcCCc
Q psy11609 29 WVKIIGQG--GDRYGLVCFKKADDAEKAILGSHEK 61 (83)
Q Consensus 29 sv~V~~d~--~~g~afV~F~~pEdA~~A~~~~ng~ 61 (83)
+++|+.+. ++|||||+|.++++|++|+..+++.
T Consensus 2 ~~kl~ln~~~~~G~~fV~f~~~~~A~~al~~~~~~ 36 (158)
T 2kn4_A 2 QYKLILNGKTLKGETTTEAVDAATAEKVFKQYAND 36 (158)
T ss_dssp EEEEEEECSSCEEEEEEECSSHHHHHHHHHHHHHH
T ss_pred cEEEEecCccccchhHHHHHHHHhHHHHHHhhccc
Confidence 37787776 6999999999999999999887753
No 212
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.65 E-value=0.00027 Score=46.81 Aligned_cols=57 Identities=14% Similarity=0.180 Sum_probs=46.5
Q ss_pred hhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCceecC-eeeEEEec
Q psy11609 14 KDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFG-CKIDVSPY 73 (83)
Q Consensus 14 ~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~g-~~i~V~~a 73 (83)
...+-++|++||+|.+... ....-+-.|.|+++.+|++|+.. ||+.|.| .-|=|.+.
T Consensus 37 ~~~VL~~F~~~G~Iv~~~~--~~~~NWihI~Y~s~~~A~rAL~k-NG~ii~g~~mIGV~p~ 94 (119)
T 1wwh_A 37 ASYILLQFAQYGNILKHVM--SNTGNWMHIRYQSKLQARKALSK-DGRIFGESIMIGVKPC 94 (119)
T ss_dssp HHHHHHHHHTTSCEEEEEE--CSSSSEEEEEESSHHHHHHHHTT-TTCEETTTEECEEEEC
T ss_pred HHHHHHHHHhhCcEEEecc--CCCCCeEEEEeCCHHHHHHHHHh-CCeEecCCEEEEEEEC
Confidence 4557889999999997765 33567999999999999999966 9999975 66667664
No 213
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=97.43 E-value=6e-05 Score=48.88 Aligned_cols=44 Identities=18% Similarity=0.043 Sum_probs=38.1
Q ss_pred EEeccC--CceEEEEEeCCchHHHHHHhhc-CCceecCeeeEEEecCC
Q psy11609 31 KIIGQG--GDRYGLVCFKKADDAEKAILGS-HEKHFFGCKIDVSPYHD 75 (83)
Q Consensus 31 ~V~~d~--~~g~afV~F~~pEdA~~A~~~~-ng~~~~g~~i~V~~a~g 75 (83)
.+..+. -+|+++|.|.++++|++|+.+| ||..++| +|.|..+..
T Consensus 4 al~l~g~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~ 50 (150)
T 2i2y_A 4 KLILNGKTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATK 50 (150)
T ss_dssp EEEECCSSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTT
T ss_pred EeeeccccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccC
Confidence 344443 4899999999999999999999 9999999 999998775
No 214
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=97.42 E-value=0.00016 Score=48.74 Aligned_cols=63 Identities=16% Similarity=0.338 Sum_probs=46.7
Q ss_pred cchhhHHHHHhccCCceeEEE-Eec--------------cC---CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEe
Q psy11609 11 TSLKDGLYHEYKKHGKVSWVK-IIG--------------QG---GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSP 72 (83)
Q Consensus 11 ~~~~d~L~~eF~kfG~Itsv~-V~~--------------d~---~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~ 72 (83)
.+....+-.+|++||+|..-. +.+ -+ ...+--|+|.++.+|++|++. ||+.|.|.=|-|.+
T Consensus 17 ~~~~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~-NG~ii~G~mIGV~P 95 (132)
T 3p3d_A 17 ETMANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLE-NGAVFNGVLLGVIP 95 (132)
T ss_dssp GGGHHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTT-TTCEETTEECEEEE
T ss_pred HHHHHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHh-CCeEeCcEEEEEEE
Confidence 344455778999999997511 110 01 245779999999999999965 99999999888888
Q ss_pred cC
Q psy11609 73 YH 74 (83)
Q Consensus 73 a~ 74 (83)
..
T Consensus 96 y~ 97 (132)
T 3p3d_A 96 YT 97 (132)
T ss_dssp CC
T ss_pred CC
Confidence 74
No 215
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.80 E-value=0.0023 Score=41.38 Aligned_cols=53 Identities=15% Similarity=0.299 Sum_probs=42.8
Q ss_pred EeeeecCCcchhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcC
Q psy11609 3 LFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSH 59 (83)
Q Consensus 3 lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~n 59 (83)
+|+...+.+--..+|.+.|+.||-|. |+=+. +-.|||.|++|+.|..|+..++
T Consensus 8 V~~l~FP~ewKt~Di~~lFs~fggv~-I~Wid---DTsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 8 VLHVTFPKEWKTSDLYQLFSAFGNIQ-ISWID---DTSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEECCTTCCHHHHHHHTTTSEEEE-EEEEE---TTEEEEEEEEECHHHHHHHHHT
T ss_pred EEEEeCChhhhhHHHHHHHhccCCEE-EEEEc---CCeEEEEecCHHHHHHHHHhcc
Confidence 45666677777788999999999777 54444 4589999999999999998764
No 216
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.69 E-value=0.011 Score=38.23 Aligned_cols=69 Identities=17% Similarity=0.309 Sum_probs=56.0
Q ss_pred CeEeeeecCCcchhhHHHHHhccC-----CceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecC
Q psy11609 1 MALFIYVVSDTSLKDGLYHEYKKH-----GKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYH 74 (83)
Q Consensus 1 ~~lfv~k~~d~~~~d~L~~eF~kf-----G~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~ 74 (83)
+++-|.++.++.-++-|.=-|.+- |.|.+|+... +-|+|+|.+++.|++-+.. .--.|.|.+|.|.++-
T Consensus 9 ~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~----~~AvItF~d~~va~rVL~k-~~H~L~~~~LsV~P~~ 82 (104)
T 2dhx_A 9 VAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG----CGGVLTFREPADAERVLAQ-ADHELHGAQLSLRPAP 82 (104)
T ss_dssp CEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET----TEEEEEESSHHHHHHHHTC-SCCBSSSSBCEEEECC
T ss_pred cEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC----CcEEEEEcChHHHHHHhcC-CcceecCeEEEEEcCC
Confidence 478888888877777788888872 8999888754 7899999999999999865 2357788999998865
No 217
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=96.65 E-value=0.0034 Score=40.54 Aligned_cols=53 Identities=15% Similarity=0.302 Sum_probs=42.6
Q ss_pred EeeeecCCcchhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcC
Q psy11609 3 LFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSH 59 (83)
Q Consensus 3 lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~n 59 (83)
+|+...+.+--..+|.+.|+.||-|. |+=+. +-.|||.|++|+.|..|+..++
T Consensus 18 Vf~l~FP~ewKt~DI~~lFs~fggv~-I~Wid---DTsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 18 VLHVTFPKEWKTSDLYQLFSAFGNIQ-ISWID---DTSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp EEEEECCTTCCHHHHHHHHTTTCSCC-CEEEE---TTEEEEECSCHHHHHHHHHHHH
T ss_pred EEEEeCChhhhhHHHHHHhhccCCEE-EEEEc---CCeEEEEecCHHHHHHHHHhcc
Confidence 45566677777788999999999887 54444 4589999999999999998764
No 218
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=95.51 E-value=0.01 Score=46.61 Aligned_cols=54 Identities=11% Similarity=0.126 Sum_probs=36.7
Q ss_pred eEeeeecCCcchhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhh
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILG 57 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~ 57 (83)
++||. -..+.-+.+|.+.|+.||+|+++.- +....-||.|+|.+.+.++.++..
T Consensus 55 sv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~-~~~~g~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 55 TVLIH-CPEKISENKFLKYLSQFGPINNHFF-YESFGLYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp EEEEE-ECCC---CHHHHHHGGGSCCCCEEE-ECSSSEEEEEECC---CCHHHHSS
T ss_pred eEEEE-cCCCCCHHHHHHHHHhcCCcceEEE-EccCCeEEEEEeCCHHHHHHHHhc
Confidence 57887 4566777789999999999996543 322345999999999999977655
No 219
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=93.47 E-value=0.15 Score=39.96 Aligned_cols=53 Identities=15% Similarity=0.274 Sum_probs=40.8
Q ss_pred eeeecCCcchhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCC
Q psy11609 4 FIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHE 60 (83)
Q Consensus 4 fv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng 60 (83)
|+.+.+...-..+|.+.|+.||.|. |+-+ ++-.|||.|+++|.|..++++++.
T Consensus 443 l~v~f~~~~~~~~i~~~fs~fg~v~-V~wi---ddt~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 443 LHVTFPKEWKTSDLYQLFSAFGNIQ-ISWI---DDTSAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp EEEECCTTCCHHHHHHHGGGGCCCE-EEEC---SSSEEEEECSCHHHHHHHHHHHTT
T ss_pred EEEeCCCCCCHHHHHHHHHhcCCEE-EEEE---cCCeEEEEECCHHHHHHHHHHHHh
Confidence 4445555555677999999999766 5433 455799999999999999999863
No 220
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=93.05 E-value=0.95 Score=28.04 Aligned_cols=62 Identities=13% Similarity=0.067 Sum_probs=46.0
Q ss_pred eeeecCCcchhhHHHHHhccCCceeEEEEec-cC-----CceEEEEEeCCchHHHHHHhhcCCceecC
Q psy11609 4 FIYVVSDTSLKDGLYHEYKKHGKVSWVKIIG-QG-----GDRYGLVCFKKADDAEKAILGSHEKHFFG 65 (83)
Q Consensus 4 fv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~-d~-----~~g~afV~F~~pEdA~~A~~~~ng~~~~g 65 (83)
-|-+|...-.++.+.+..+....+....-+. +. .-.-|||.|+++|++..-.+..+|..|-+
T Consensus 5 VIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D 72 (91)
T 1uw4_A 5 VIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLD 72 (91)
T ss_dssp EEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEEC
T ss_pred EEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEc
Confidence 3445556666666999999888776544322 21 24679999999999999999999998854
No 221
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=90.92 E-value=0.21 Score=28.95 Aligned_cols=44 Identities=11% Similarity=0.126 Sum_probs=32.5
Q ss_pred ceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecC
Q psy11609 26 KVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYH 74 (83)
Q Consensus 26 ~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~ 74 (83)
.|-.+.| .+.|.||.-.... |++++..+++..+.|+++.|+.+.
T Consensus 32 ~IG~I~i----~d~~s~v~v~~~~-~~~~~~~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 32 DIGIITI----MDNASYVEILNGK-GPHVLKVMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp GEEEEEE----CSSCEEEEECTTC-HHHHHHHHTTCCC---CCCEEECC
T ss_pred hccEEEE----eCCcEEEEECHHH-HHHHHHHhccccCcCceEEEEECC
Confidence 3445555 4569999987765 999999999999999999998874
No 222
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=83.02 E-value=1.4 Score=27.87 Aligned_cols=63 Identities=11% Similarity=0.033 Sum_probs=41.2
Q ss_pred EeeeecCCcchhhHHHHHhccCCceeEEE-EeccC-----CceEEEEEeCCchHHHHHHhhcCCceecC
Q psy11609 3 LFIYVVSDTSLKDGLYHEYKKHGKVSWVK-IIGQG-----GDRYGLVCFKKADDAEKAILGSHEKHFFG 65 (83)
Q Consensus 3 lfv~k~~d~~~~d~L~~eF~kfG~Itsv~-V~~d~-----~~g~afV~F~~pEdA~~A~~~~ng~~~~g 65 (83)
|-|-+|...-.++.+.+..+..=.+.+-. +.++. .-.-|||.|+++||...-.+..+|..|-+
T Consensus 12 vVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D 80 (97)
T 2l08_A 12 VVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLD 80 (97)
T ss_dssp EEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEEC
T ss_pred EEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEe
Confidence 44556666666777777665443322111 00111 24578999999999999999999998854
No 223
>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A
Probab=67.45 E-value=10 Score=21.60 Aligned_cols=22 Identities=36% Similarity=0.339 Sum_probs=18.6
Q ss_pred CceEEEEEeCCchHHHHHHhhc
Q psy11609 37 GDRYGLVCFKKADDAEKAILGS 58 (83)
Q Consensus 37 ~~g~afV~F~~pEdA~~A~~~~ 58 (83)
.++.-+-+|.++|||-.|.+..
T Consensus 25 g~r~~LGtf~T~eeAA~AyD~A 46 (63)
T 1gcc_A 25 GARVWLGTFETAEDAALAYDRA 46 (63)
T ss_dssp SEEEEEEEESSHHHHHHHHHHH
T ss_pred CeEEEeeeCCCHHHHHHHHHHH
Confidence 4688899999999998887654
No 224
>3swz_A Steroid 17-alpha-hydroxylase/17,20 lyase; cytochrome P450, CYP17A1, P450C17, P450 17A1, monooxyg 17A-hydroxylase, heme protein; HET: HEM TOK; 2.40A {Homo sapiens} PDB: 3ruk_A*
Probab=62.64 E-value=12 Score=27.10 Aligned_cols=50 Identities=18% Similarity=0.181 Sum_probs=37.4
Q ss_pred hhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCceecCeeeE
Q psy11609 14 KDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKID 69 (83)
Q Consensus 14 ~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~ 69 (83)
-..+.+..++||+|-.+++.. --.|...+|+.+++++.. ++..+.++|..
T Consensus 32 ~~~~~~~~~kYG~i~~~~~g~-----~~~vvv~~p~~~k~il~~-~~~~f~~rp~~ 81 (494)
T 3swz_A 32 HNNFFKLQKKYGPIYSVRMGT-----KTTVIVGHHQLAKEVLIK-KGKDFSGRPQM 81 (494)
T ss_dssp HHHHHHTHHHHCSEEEEEETT-----EEEEEECSHHHHHHHHTT-TTTTTBBCCCC
T ss_pred hHHHHHHHHHcCCEEEEEeCC-----CCEEEECCHHHHHHHHHh-CcHhhCCCCCc
Confidence 345777788999999888743 457788999999999854 56666666653
No 225
>2dyi_A Probable 16S rRNA-processing protein RIMM; ribosomal protein S19, PRC-barrel, STRU genomics, NPPSFA; 2.00A {Thermus thermophilus} PDB: 3a1p_A 2dog_A
Probab=62.32 E-value=13 Score=24.67 Aligned_cols=47 Identities=11% Similarity=0.051 Sum_probs=33.3
Q ss_pred ceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCCCccc-cC
Q psy11609 26 KVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDVDFEL-EF 82 (83)
Q Consensus 26 ~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~~~e~-e~ 82 (83)
+|.+++.+ ++...|.|+.-++-+.|- + +-|+.|+|...+-|+.++ ||
T Consensus 42 ~v~~~r~~----~~~~ivkf~gi~~r~~Ae-~-----L~G~~l~v~~~~lp~l~e~e~ 89 (162)
T 2dyi_A 42 AIEDLYRV----GEELVVHLAGVTDRTLAE-A-----LVGLRVYAEVADLPPLEEGRY 89 (162)
T ss_dssp EEEEEEEE----TTEEEEEETTCCSHHHHH-T-----TTTCEEEEEGGGSCCCCTTCC
T ss_pred EEEEEEEE----CCEEEEEEcCCCCHHHHH-H-----hCCCEEEEEHHHCCCCCCCcE
Confidence 45555432 457889999998887772 3 557788999998776654 76
No 226
>3h9n_A Ribosome maturation factor RIMM; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.70A {Haemophilus influenzae}
Probab=55.48 E-value=20 Score=24.02 Aligned_cols=39 Identities=23% Similarity=0.184 Sum_probs=29.0
Q ss_pred ceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCCCccc-cC
Q psy11609 38 DRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDVDFEL-EF 82 (83)
Q Consensus 38 ~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~~~e~-e~ 82 (83)
++..+|.|+.-++-+.|- + +-|+.|+|...+-|+.++ ||
T Consensus 56 ~~~~lvkf~gi~dr~~Ae-~-----L~G~~l~v~~~~lp~l~edE~ 95 (177)
T 3h9n_A 56 NHEIIVKLKGVDDREAAQ-I-----LANVEIGVDLSVFPELEEGDY 95 (177)
T ss_dssp SSCEEEEESSCCSHHHHH-T-----TTTCEEEEECCCCCCCSSSCG
T ss_pred CCEEEEEEcCCCCHHHHH-H-----hcCCEEEEEHHHCCCCCCCCC
Confidence 455699999998888883 3 557888898888766544 76
No 227
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=54.63 E-value=2.9 Score=27.66 Aligned_cols=28 Identities=11% Similarity=0.235 Sum_probs=18.9
Q ss_pred HHHHHhccCCceeEEEEeccCCceEEEEEeCC
Q psy11609 16 GLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKK 47 (83)
Q Consensus 16 ~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~ 47 (83)
++.+.+...|+|.+-. ..+|||||.-.+
T Consensus 3 ~~~~l~~~~G~Vkwfn----~~kGfGFI~~~~ 30 (148)
T 3ts2_A 3 DEPQLLHGAGICKWFN----VRMGFGFLSMTA 30 (148)
T ss_dssp ---CCEEEEEEEEEEE----TTTTEEEEEEEE
T ss_pred cccccccceeEEEEEE----CCCCeeEEeeCc
Confidence 4556677788887544 379999999763
No 228
>3tbg_A Cytochrome P450 2D6; monooxygenase, thioridazine, oxidoreductase; HET: RTZ HEM; 2.10A {Homo sapiens} PDB: 3qm4_A* 2f9q_A*
Probab=54.49 E-value=11 Score=26.92 Aligned_cols=47 Identities=11% Similarity=0.079 Sum_probs=32.9
Q ss_pred hHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCceecCee
Q psy11609 15 DGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCK 67 (83)
Q Consensus 15 d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~ 67 (83)
..+.+..+|||+|-.+++.. -=.|...+|+.+++++.. ++..+.+++
T Consensus 34 ~~~~~~~~kYG~i~~~~~g~-----~~~vvv~~p~~i~~vl~~-~~~~f~~r~ 80 (479)
T 3tbg_A 34 YCFDQLRRRFGDVFSLQLAW-----TPVVVLNGLAAVREALVT-HGEDTADRP 80 (479)
T ss_dssp HHHHHHHHHHCSEEEEEETT-----EEEEEEEHHHHHHHHHTT-TGGGSCBCC
T ss_pred HHHHHHHHHhCCEEEEEECC-----eeEEEECCHHHHHHHHHh-CChhhcCCC
Confidence 34667788999998888733 235677899999888743 555555554
No 229
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=53.60 E-value=14 Score=25.50 Aligned_cols=34 Identities=21% Similarity=0.187 Sum_probs=26.5
Q ss_pred hHHHHHh--ccCCceeEEEEeccC--CceEEEEEeCCch
Q psy11609 15 DGLYHEY--KKHGKVSWVKIIGQG--GDRYGLVCFKKAD 49 (83)
Q Consensus 15 d~L~~eF--~kfG~Itsv~V~~d~--~~g~afV~F~~pE 49 (83)
..|.++| +.|.++. |+..... ..|+|.|.|.+.=
T Consensus 36 ~~l~~~~~~~~F~p~k-v~~l~~~~Gh~g~aIv~F~~dw 73 (172)
T 4e8u_A 36 SKLRDEYILRGFNPTR-VRPLWNYLGHSGTAIVEFNKDW 73 (172)
T ss_dssp HHHHHHHHHTTCCCSE-EEEEECSSBEEEEEEEECCSSH
T ss_pred HHHHHHHHhcCCCCce-eEecccCCCCceeEEEEecCCh
Confidence 3588988 9999988 6666644 5789999998753
No 230
>2f1l_A 16S rRNA processing protein; structural genomics, joint CENT structural genomics, JCSG, protein structure initiative, PS unknown function; HET: UNL; 2.46A {Pseudomonas aeruginosa} SCOP: b.41.1.4 b.43.3.4
Probab=51.95 E-value=20 Score=24.41 Aligned_cols=39 Identities=26% Similarity=0.250 Sum_probs=27.3
Q ss_pred ceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCCCccc-cC
Q psy11609 38 DRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDVDFEL-EF 82 (83)
Q Consensus 38 ~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~~~e~-e~ 82 (83)
++..+|.|+.-++-+.|- + +-|+.|+|...+-|+.++ ||
T Consensus 74 ~~~~ivkf~gi~dr~~Ae-~-----L~G~~l~v~r~~lp~l~edEf 113 (187)
T 2f1l_A 74 GKVLAAKLKGLDDREEAR-T-----FTGYEICIPRSELPSLEEGEY 113 (187)
T ss_dssp TTEEEEEETTCCSHHHHH-T-----TTTCEEEEEGGGSCC-----C
T ss_pred CCEEEEEEeCCCCHHHHH-H-----hCCCEEEEEHHHCCCCCCCCE
Confidence 457889999998888772 3 557788999888776654 76
No 231
>3e6i_A CYPIIE1, P450-J, cytochrome P450 2E1; CYP2E1, monooxygenase, acetaminophen, oxidoreductase, heme, endoplasmic reticulum, iron, membrane; HET: HEM; 2.20A {Homo sapiens} PDB: 3e4e_A* 3gph_A* 3koh_A* 3lc4_A* 3t3z_A*
Probab=50.57 E-value=17 Score=25.91 Aligned_cols=40 Identities=13% Similarity=0.161 Sum_probs=31.4
Q ss_pred hhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhh
Q psy11609 13 LKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILG 57 (83)
Q Consensus 13 ~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~ 57 (83)
.-..+.+..++||+|-.+++.. .-.|...+|+.+++.+..
T Consensus 32 ~~~~~~~~~~~yG~v~~~~~g~-----~~~vvv~~~~~v~~il~~ 71 (476)
T 3e6i_A 32 IPKSFTRLAQRFGPVFTLYVGS-----QRMVVMHGYKAVKEALLD 71 (476)
T ss_dssp HHHHHHHHHHHHCSEEEEEETT-----EEEEEECSHHHHHHHHHT
T ss_pred HhHHHHHHHHHhCCEEEEEECC-----ccEEEECCHHHHHHHHhc
Confidence 3345777889999998888733 567889999999999864
No 232
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A*
Probab=50.16 E-value=19 Score=27.56 Aligned_cols=39 Identities=13% Similarity=-0.015 Sum_probs=28.8
Q ss_pred HHHHh--ccCCceeEEEEeccC-C--ceEEEEEeCCchHHHHHH
Q psy11609 17 LYHEY--KKHGKVSWVKIIGQG-G--DRYGLVCFKKADDAEKAI 55 (83)
Q Consensus 17 L~~eF--~kfG~Itsv~V~~d~-~--~g~afV~F~~pEdA~~A~ 55 (83)
|.+.| +.+|-||++.+--.+ + ...+++.|.+.++|.+|+
T Consensus 218 l~~l~~g~~lGiVt~~~l~l~p~p~~~~~~~~~f~~~~~~~~~~ 261 (520)
T 1wvf_A 218 LDGMFTQANYGICTKMGFWLMPKPPVFKPFEVIFEDEADIVEIV 261 (520)
T ss_dssp CHHHHTTSSSCEEEEEEEECEECCSEEEEEEEEECCGGGHHHHH
T ss_pred hhhhccCCceEEEEEEEEEEEecCCeEEEEEEEeCCHHHHHHHH
Confidence 55555 479999999886654 2 346799999999987744
No 233
>2lfv_A Protein DAMX; cell division, peptidoglycan binding domain, murein binding bacterial cell division protein, RNP fold, RNP domain, cell; NMR {Escherichia coli}
Probab=55.57 E-value=3.4 Score=26.07 Aligned_cols=63 Identities=19% Similarity=0.132 Sum_probs=40.8
Q ss_pred eeeecCCcchhhHHHHHhccCCceeEEEEecc---CCceEEE--EEeCCchHHHHHHhhcCCceecCee
Q psy11609 4 FIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQ---GGDRYGL--VCFKKADDAEKAILGSHEKHFFGCK 67 (83)
Q Consensus 4 fv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d---~~~g~af--V~F~~pEdA~~A~~~~ng~~~~g~~ 67 (83)
|...+..-+-+++|..--++++ +..++|... +..+|-. -.|.+.++|++|+..+...+-.++|
T Consensus 26 YTLQL~a~~~~~~l~~f~~~~~-l~~~~v~~t~rnGk~WyvVlyG~Y~s~~~A~~A~~~LP~~l~~~~P 93 (106)
T 2lfv_A 26 YTLQLSSSSNYDNLNGWAKKEN-LKNYVVYETTRNGQPWYVLVSGVYASKEEAKKAVSTLPADVQAKNP 93 (106)
Confidence 3444555555566666666776 455666653 2455544 4699999999999998876554444
No 234
>2e7g_A Putative ribosome-binding factor A; RBFA, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.52.7.1
Probab=49.98 E-value=16 Score=23.37 Aligned_cols=37 Identities=14% Similarity=-0.028 Sum_probs=21.7
Q ss_pred CCceeEEEEeccCCceEEEEE-eCCchH---HHHHHhhcCC
Q psy11609 24 HGKVSWVKIIGQGGDRYGLVC-FKKADD---AEKAILGSHE 60 (83)
Q Consensus 24 fG~Itsv~V~~d~~~g~afV~-F~~pEd---A~~A~~~~ng 60 (83)
+=+||.|.|..|-+.--.||. |-+.++ +.+|++...|
T Consensus 43 ~vtVt~V~vS~Dl~~AkVyvs~~~~~~~~~~~~~~L~~a~g 83 (129)
T 2e7g_A 43 NVELSKVSLTPDFSACRAYWKTTLSAEQNAHMEAVLQRSAA 83 (129)
T ss_dssp TCCEEEEEECTTSCCEEEEECCCSCHHHHHHHHHHHHHTHH
T ss_pred eeEEEEEEECCCCcEEEEEEEecCChhhHHHHHHHHHHhHH
Confidence 458999999887665444554 333433 3345555444
No 235
>3ld6_A Lanosterol 14-alpha demethylase; cytochrome P450, ketoconazole, S genomics, structural genomics consortium, SGC; HET: HEM KKK BCD; 2.80A {Homo sapiens} PDB: 3juv_A* 3jus_A*
Probab=49.66 E-value=18 Score=26.05 Aligned_cols=45 Identities=18% Similarity=0.169 Sum_probs=32.0
Q ss_pred HHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCceecCe
Q psy11609 16 GLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGC 66 (83)
Q Consensus 16 ~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~g~ 66 (83)
-|.+..+|||+|-++++.. .-.|...+|+.++..+.. ++..+..+
T Consensus 36 ~~~~~~~kYG~i~~~~~~~-----~~~vvv~~~~~i~~il~~-~~~~~~~~ 80 (461)
T 3ld6_A 36 FLENAYEKYGPVFSFTMVG-----KTFTYLLGSDAAALLFNS-KNEDLNAE 80 (461)
T ss_dssp HHHHHHHHHCSEEEEEETT-----EEEEEECSHHHHHHHHHC-CTTTEESH
T ss_pred HHHHHHHHhCCEEEEEECC-----ccEEEEeCHHHHHHHHhC-CccccCCC
Confidence 3777889999998888743 446778899988888744 44444443
No 236
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*
Probab=48.69 E-value=18 Score=28.70 Aligned_cols=43 Identities=16% Similarity=0.179 Sum_probs=34.3
Q ss_pred HHHHHh----ccCCceeEEEEeccC---CceEEEEEeCCchHHHHHHhhc
Q psy11609 16 GLYHEY----KKHGKVSWVKIIGQG---GDRYGLVCFKKADDAEKAILGS 58 (83)
Q Consensus 16 ~L~~eF----~kfG~Itsv~V~~d~---~~g~afV~F~~pEdA~~A~~~~ 58 (83)
+|++.| .-+|-||++.+---+ ...++++.|.+.++|-+|+.++
T Consensus 359 DL~~L~iGSEGTLGIITeatLrL~P~P~~~~~~~~~f~d~~~a~~av~~i 408 (658)
T 4bby_A 359 DIHHFIMGSEGTLGVITEATIKIRPTPEYQKYGSVAFPNFEQGVACLREI 408 (658)
T ss_dssp CTHHHHTTCTTSSCEEEEEEEECEECCSEEEEEEEEESSHHHHHHHHHHH
T ss_pred CHHHHhccCCCcCcceeeeeeeeccCCccccccccccCCchhhhhhHHHH
Confidence 577766 388999998886654 3678999999999999988765
No 237
>3n9y_A Cholesterol SIDE-chain cleavage enzyme; cytochrome P450, cholesterol SIDE chain cleavage, structural genomics, structural genomics consortium, SGC; HET: HEM CLR; 2.10A {Homo sapiens} PDB: 3n9z_A* 3na1_A* 3na0_A* 3mzs_A*
Probab=48.09 E-value=20 Score=25.69 Aligned_cols=38 Identities=13% Similarity=0.073 Sum_probs=29.7
Q ss_pred hHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhh
Q psy11609 15 DGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILG 57 (83)
Q Consensus 15 d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~ 57 (83)
..+.+..+|||+|-.+++.. .-.|...+|+.++..+..
T Consensus 36 ~~~~~l~~kYG~i~~~~~g~-----~~~vvv~dp~~~~~il~~ 73 (487)
T 3n9y_A 36 LHHVQNFQKYGPIYREKLGN-----VESVYVIDPEDVALLFKS 73 (487)
T ss_dssp HHHHHHHHHHCSEEEEEETT-----EEEEEECCHHHHHHHHHT
T ss_pred HHHHHHHHHcCceeeccCCC-----CCEEEEcCHHHHHHHHHh
Confidence 44667789999999888732 347889999999998854
No 238
>2qgg_A 16S rRNA-processing protein RIMM; X-RAY, NESG, ASR73, structural genomics, PSI-2, protein structure initiative; 2.40A {Acinetobacter calcoaceticus}
Probab=47.08 E-value=21 Score=23.96 Aligned_cols=39 Identities=15% Similarity=0.158 Sum_probs=29.4
Q ss_pred ceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCCCccc-cC
Q psy11609 38 DRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDVDFEL-EF 82 (83)
Q Consensus 38 ~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~~~e~-e~ 82 (83)
++..+|.|+.-++-+.|- + +-|+.|+|...+-|+.++ ||
T Consensus 65 ~~~~ivkf~gi~dr~~Ae-~-----L~G~~l~v~~~~lp~l~ede~ 104 (182)
T 2qgg_A 65 GKGLVVSLKGVSDRTGAE-S-----LVASNIWIAKSQLPKADVDEY 104 (182)
T ss_dssp TTEEEEEETTCCSHHHHH-T-----TTTCEEEEETTCCCCCHHHHC
T ss_pred CCEEEEEECCCCCHHHHH-H-----hCCCEEEEEHHHCCCCCCCcE
Confidence 456788999998888772 3 457788999888876654 66
No 239
>1jos_A RBFA, ribosome-binding factor A; RNA binding protein, structure 2 function project, S2F, structural genomics; 1.70A {Haemophilus influenzae} SCOP: d.52.7.1 PDB: 1kkg_A
Probab=45.79 E-value=28 Score=22.19 Aligned_cols=33 Identities=18% Similarity=-0.023 Sum_probs=20.6
Q ss_pred CCceeEEEEeccCCceEEEEEeCC---chHHHHHHh
Q psy11609 24 HGKVSWVKIIGQGGDRYGLVCFKK---ADDAEKAIL 56 (83)
Q Consensus 24 fG~Itsv~V~~d~~~g~afV~F~~---pEdA~~A~~ 56 (83)
+=+||.|.|..|-+.--.||..-. +++.+.++.
T Consensus 34 ~vtVt~V~vS~Dl~~AkVyvs~~g~~~~~~~~~~~~ 69 (128)
T 1jos_A 34 MVTVSDVEVSSDLSYAKIFVTFLFDHDEMAIEQGMK 69 (128)
T ss_dssp CEEEEEEEECTTSCEEEEEEEESCCSCHHHHHHHHH
T ss_pred ceEEeEEEECCCCCEEEEEEEeCCCCchhhHHHHHH
Confidence 447889999887776666666553 444444433
No 240
>3mdm_A Cholesterol 24-hydroxylase; CYP46A1, P450 46A1, thioperamide, monooxygenase, metab enzyme, oxidoreductase, heme, cholesterol metabolism; HET: HEM FJZ; 1.60A {Homo sapiens} PDB: 2q9g_A* 2q9f_A* 3mdr_A* 3mdt_A* 3mdv_A* 4enh_A* 4fia_A*
Probab=45.60 E-value=29 Score=24.69 Aligned_cols=40 Identities=23% Similarity=0.238 Sum_probs=30.7
Q ss_pred chhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHh
Q psy11609 12 SLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAIL 56 (83)
Q Consensus 12 ~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~ 56 (83)
...+.+.+..++||+|-.+++.. .-.|...+|+.+++.+.
T Consensus 11 ~~~~~~~~~~~kyG~v~~~~~~~-----~~~vvv~~p~~~~~il~ 50 (456)
T 3mdm_A 11 VLQDVFLDWAKKYGPVVRVNVFH-----KTSVIVTSPESVKKFLM 50 (456)
T ss_dssp CHHHHHHHHHHHHCSEEEEEETT-----EEEEEECCHHHHHHHHT
T ss_pred hHHHHHHHHHHHhCCeEEEEeCC-----CCEEEECCHHHHHHHHh
Confidence 34455777888999998887632 45688999999999885
No 241
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=44.64 E-value=48 Score=19.74 Aligned_cols=50 Identities=18% Similarity=0.096 Sum_probs=35.6
Q ss_pred cchhhHHHHHhccCC-ceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCc
Q psy11609 11 TSLKDGLYHEYKKHG-KVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEK 61 (83)
Q Consensus 11 ~~~~d~L~~eF~kfG-~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~ 61 (83)
..+++.|....+.-| .|.++.|.. .=+||-||.+...++...+++...|-
T Consensus 23 ~~V~~~L~~~~~~~~l~i~~v~vP~-~fPGYVfVe~~~~~~~~~~I~~t~gV 73 (92)
T 3lpe_A 23 KNIAGLMASRAEKEQLDVYSILASE-SLKGYVLVEAETKGDVEELIKGMPRV 73 (92)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEECT-TSTTEEEEEESSHHHHHHHHTTCTTE
T ss_pred HHHHHHHHHHHHhcCCcEEEEEEec-ccCCEEEEEEecchhHHHHHHCCCCc
Confidence 344555666544433 266666643 24999999999999999999999984
No 242
>3nxu_A Cytochrome P450 3A4; alpha beta protein, cytochrome P450 fold, hemoprotein, monoo cytochrome P450 reductase, endoplasmic reticulum; HET: HEM RIT; 2.00A {Homo sapiens} SCOP: a.104.1.1 PDB: 1w0e_A* 1w0g_A* 2j0d_A* 2v0m_A* 1w0f_A* 1tqn_A* 3ua1_A* 3tjs_A*
Probab=44.04 E-value=25 Score=25.14 Aligned_cols=45 Identities=16% Similarity=-0.030 Sum_probs=31.6
Q ss_pred HHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCceecCe
Q psy11609 17 LYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGC 66 (83)
Q Consensus 17 L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~g~ 66 (83)
+.+..++||+|-.+++.. .-.|...+|+.++..+..-....+.++
T Consensus 39 ~~~~~~~yG~i~~~~~g~-----~~~vvv~dp~~i~~il~~~~~~~f~~r 83 (485)
T 3nxu_A 39 DMECHKKYGKVWGFYDGQ-----QPVLAITDPDMIKTVLVKECYSVFTNR 83 (485)
T ss_dssp HHHHHHHHCSEEEEEETT-----EEEEEECCHHHHHHHHTTTTTTTCCCC
T ss_pred HHHHHHHcCCeEEEEeCC-----CCEEEECCHHHHHHHHhccchhhccCC
Confidence 556778999998877622 347888999999999865323334443
No 243
>2kkc_A Sequestosome-1; P62, PB1, autophagy, ubiquitin-proteasome system, NF-KB signaling, alternative splicing, apoptosis, cytoplasm, differentiation; NMR {Rattus norvegicus} PDB: 2ktr_B
Probab=43.97 E-value=36 Score=21.27 Aligned_cols=57 Identities=12% Similarity=0.096 Sum_probs=35.7
Q ss_pred CcchhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCceecCeeeEEE
Q psy11609 10 DTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVS 71 (83)
Q Consensus 10 d~~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~ 71 (83)
.+.+.+-+...|....... +.|....++| =.|+|++.||...|+..++...| +|+|.
T Consensus 44 ~~~L~~~V~~lFp~l~~~~-f~l~Y~DedG-DlItiSsDeEL~~Al~~~~~~~l---RlyVk 100 (102)
T 2kkc_A 44 CERLLSRVAVLFPALRPGG-FQAHYRAERG-DLVAFSSDEELTMAMSYVKDDIF---RIYIK 100 (102)
T ss_dssp HHHHHHHHHHHCTTSCSSC-EEEEEECTTC-CEEEECSHHHHHHHHHHCCSSEE---EEEEE
T ss_pred HHHHHHHHHHHccccCCCc-EEEEEECCCC-CEEEecCHHHHHHHHHhcCCCeE---EEEEE
Confidence 4455566777776444322 4444433333 37999999999999999874333 55553
No 244
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=42.57 E-value=30 Score=21.61 Aligned_cols=35 Identities=20% Similarity=0.091 Sum_probs=28.6
Q ss_pred ceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCc
Q psy11609 26 KVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEK 61 (83)
Q Consensus 26 ~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~ 61 (83)
.|.|+-+ .++-+||-||+=.++.+..+|++.+.+.
T Consensus 40 ~I~Si~~-~~~lkGyIyVEA~~~~~V~~ai~gi~~v 74 (106)
T 3h7h_B 40 QIKSVVA-PEHVKGYIYVEAYKQTHVKQAIEGVGNL 74 (106)
T ss_dssp CCCEEEE-CTTCCSEEEEEESSHHHHHHHHTTCGGG
T ss_pred ceEEEEe-cCCCceEEEEEeCCHHHHHHHHhcccce
Confidence 4887766 4557999999999999999999877654
No 245
>2kzf_A RBFA, ribosome-binding factor A; JCSG, joint center structural genomics, PSI-biology, protein structure initiative; NMR {Thermotoga maritima}
Probab=41.90 E-value=24 Score=21.73 Aligned_cols=34 Identities=12% Similarity=0.038 Sum_probs=19.3
Q ss_pred CCceeEEEEeccCCceEEEEEeC-CchHHHHHHhh
Q psy11609 24 HGKVSWVKIIGQGGDRYGLVCFK-KADDAEKAILG 57 (83)
Q Consensus 24 fG~Itsv~V~~d~~~g~afV~F~-~pEdA~~A~~~ 57 (83)
+=+||.|.|..|-+.--.||..- +.++.+.++.+
T Consensus 35 ~vtVt~V~vs~Dl~~AkVyvs~~g~~~~~~~~~~~ 69 (106)
T 2kzf_A 35 FVTFSRVELSKDKRYADVYVSFLGTPEERKETVEI 69 (106)
T ss_dssp GCCEEEEEECTTSCEEEEEECCSSCHHHHHHHHHH
T ss_pred ceEEEEEEECCCCCEEEEEEEeCCChhhHHHHHHH
Confidence 34788999988766544455433 23444444433
No 246
>3k9v_A 1,25-dihydroxyvitamin D(3) 24-hydroxylase, mitochondrial; mitochondrial cytochrome P450, monotopic membrane protein, monooxygenase; HET: HEM CPS; 2.50A {Rattus norvegicus} PDB: 3k9y_A*
Probab=39.76 E-value=36 Score=24.19 Aligned_cols=39 Identities=21% Similarity=0.137 Sum_probs=30.2
Q ss_pred hhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhh
Q psy11609 14 KDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILG 57 (83)
Q Consensus 14 ~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~ 57 (83)
...+.+..++||+|-.+++.. .-.|...+|+.++..+..
T Consensus 51 ~~~~~~l~~~YG~i~~~~~g~-----~~~vvv~dp~~~~~il~~ 89 (482)
T 3k9v_A 51 HDTLAEYHKKYGQIFRMKLGS-----FDSVHLGSPSLLEALYRT 89 (482)
T ss_dssp HHHHHHHHHHHCSEEEEEETT-----EEEEEECSHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCEEEEccCC-----CCEEEEcCHHHHHHHHHh
Confidence 344677889999998888732 457888999999888865
No 247
>1e8g_A Vanillyl-alcohol oxidase; oxidoreductase, flavoenzyme, specificity; HET: FAD FCR; 2.1A {Penicillium simplicissimum} SCOP: d.58.32.1 d.145.1.1 PDB: 1e8f_A* 1e8h_A* 1qlt_A* 1qlu_A* 1vao_A* 1ahv_A* 1ahz_A* 1ahu_A* 2vao_A* 1w1j_A* 1dzn_A* 1w1l_A* 1e0y_A* 1w1k_A* 1w1m_A*
Probab=39.31 E-value=28 Score=26.98 Aligned_cols=34 Identities=24% Similarity=0.205 Sum_probs=26.9
Q ss_pred cCCceeEEEEeccC---CceEEEEEeCCchHHHHHHh
Q psy11609 23 KHGKVSWVKIIGQG---GDRYGLVCFKKADDAEKAIL 56 (83)
Q Consensus 23 kfG~Itsv~V~~d~---~~g~afV~F~~pEdA~~A~~ 56 (83)
.+|-||++.+--.+ ....+++.|.+.++|.+|+.
T Consensus 258 tlGiIt~~tl~l~p~p~~~~~~~~~f~~~~~a~~~~~ 294 (560)
T 1e8g_A 258 NMGIVTKIGIWLMPNPGGYQSYLITLPKDGDLKQAVD 294 (560)
T ss_dssp SSEEEEEEEEECEECCSCEEEEEEEECSTTHHHHHHH
T ss_pred cEEEEEEEEEEEEeCCCceEEEEEEcCCHHHHHHHHH
Confidence 48999998876654 25688999999999877764
No 248
>3ejb_B Biotin biosynthesis cytochrome P450-like enzyme; protein-protein complex, cytochrome P450 fold, carrier protein, 4-helix bundle, cytoplasm; HET: ZMP HTG HEM; 2.00A {Bacillus subtilis} SCOP: a.104.1.0 PDB: 3ejd_B* 3eje_B*
Probab=39.01 E-value=34 Score=24.18 Aligned_cols=44 Identities=5% Similarity=0.070 Sum_probs=32.2
Q ss_pred HHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCceecCee
Q psy11609 17 LYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCK 67 (83)
Q Consensus 17 L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~ 67 (83)
.+.+.++||+|-.+.+. +...|...+|++++.++..- ..+.+++
T Consensus 18 ~~~~~r~yGpv~~~~~~-----~~~~vvv~~~~~v~~vl~~~--~~~~~~~ 61 (404)
T 3ejb_B 18 FYDTLRAVHPIYKGSFL-----KYPGWYVTGYEETAAILKDA--RFKVRTP 61 (404)
T ss_dssp HHHHHHHHCSEEEEEET-----TEEEEEECCHHHHHHHHHCT--TEECCCS
T ss_pred HHHHHHhhCCEeeccCC-----CCCEEEEecHHHHHHHHhCc--ccccCcc
Confidence 45667899999877753 35788899999999999743 4554443
No 249
>2ktr_A Sequestosome-1; autophagy, NF-KB signaling, HOMO-oligomer, PB1 dimer, signaling protein, transport protein; NMR {Rattus norvegicus}
Probab=38.76 E-value=47 Score=21.37 Aligned_cols=57 Identities=12% Similarity=0.117 Sum_probs=35.8
Q ss_pred CcchhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCceecCeeeEEE
Q psy11609 10 DTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVS 71 (83)
Q Consensus 10 d~~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~ 71 (83)
.+.+.+-+...|..-.... +.|....++| =.|+|++.||...|+..++...| +|+|.
T Consensus 59 ~~~L~~kV~~lFp~L~~~~-f~l~YkDEdG-DlItISsDeEL~~Al~~~~~~~l---RlyVk 115 (117)
T 2ktr_A 59 SERLLSRVAVLFPALRPGG-FQAHYRAERG-DLVAFSSDEELTMAMSYVKDDIF---RIYIK 115 (117)
T ss_dssp HHHHHHHHHHHCTTSCSSC-EEEEEECTTC-CEEEECSHHHHHHHHHHCCSSEE---EEEEE
T ss_pred HHHHHHHHHHHccccCCCc-EEEEEECCCC-CEEEecCHHHHHHHHHhcCCCeE---EEEEE
Confidence 3446666777885444322 4444433333 37999999999999999874332 55553
No 250
>2dyj_A Ribosome-binding factor A; 16S rRNA processing, 17S RNA, KH domain; 1.84A {Thermus thermophilus} SCOP: d.52.7.1 PDB: 2r1c_A
Probab=38.26 E-value=32 Score=20.79 Aligned_cols=37 Identities=16% Similarity=0.038 Sum_probs=25.0
Q ss_pred CCceeEEEEeccCCceEEEEEeCC-chHHHHHHhhcCC
Q psy11609 24 HGKVSWVKIIGQGGDRYGLVCFKK-ADDAEKAILGSHE 60 (83)
Q Consensus 24 fG~Itsv~V~~d~~~g~afV~F~~-pEdA~~A~~~~ng 60 (83)
+=+||.|.|..|-+.--.||..-. .+++-+|++...|
T Consensus 30 ~vtVt~V~vs~Dl~~AkVyvs~~~~~~~~~~~L~~a~g 67 (95)
T 2dyj_A 30 LLTVEAVRLSKDGSVLSVYVEAFREEEGALRALSRAER 67 (95)
T ss_dssp TCEEEEEEECTTSSEEEEEEECSSCHHHHHHHHHHTHH
T ss_pred cEEEEEEEECCCCCEEEEEEEeCCCHHHHHHHHHHhHH
Confidence 458899999887665555555433 5666777777666
No 251
>3i3k_A Lanosterol 14-alpha demethylase; cytochrome P450, hemeprotein, alternative splicing, cholesterol biosynthesis, endoplasmic reticulum, heme, iron; HET: HEM KLN BCD; 2.80A {Homo sapiens} PDB: 3jus_A* 3juv_A* 3ld6_A*
Probab=36.90 E-value=37 Score=24.20 Aligned_cols=36 Identities=22% Similarity=0.264 Sum_probs=28.2
Q ss_pred HHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhh
Q psy11609 17 LYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILG 57 (83)
Q Consensus 17 L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~ 57 (83)
+.+..++||+|-++++.. --.|...+|+.++..+..
T Consensus 37 ~~~~~~~yG~v~~l~l~g-----~~~vvv~~~~~~~~il~~ 72 (461)
T 3i3k_A 37 LENAYEKYGPVFSFTMVG-----KTFTYLLGSDAAALLFNS 72 (461)
T ss_dssp HHHHHHHHCSEEEEEETT-----EEEEEECSHHHHHHHHHC
T ss_pred HHHHHHHhCCEEEEEecC-----ceEEEEeChHHHHHHHhc
Confidence 566778999999998744 456778899999888754
No 252
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=36.76 E-value=3.7 Score=31.16 Aligned_cols=41 Identities=12% Similarity=0.256 Sum_probs=27.8
Q ss_pred hHHHHHhccCCceeEEEEecc----C--CceEE-----EEEeCCchHHHHHH
Q psy11609 15 DGLYHEYKKHGKVSWVKIIGQ----G--GDRYG-----LVCFKKADDAEKAI 55 (83)
Q Consensus 15 d~L~~eF~kfG~Itsv~V~~d----~--~~g~a-----fV~F~~pEdA~~A~ 55 (83)
-.|...|..+|+|..|..+.. . ...|+ |+.|..+.++..++
T Consensus 7 p~L~~lF~p~pPl~~~~P~~~~p~~~~~~~~~~gia~~~~~f~~~~~~~~~~ 58 (437)
T 3pgw_S 7 PNLLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRDAPPPT 58 (437)
T ss_pred ccHHHhcCCCCCCcCCCCcccccccccCCCCcccHHHHHHhhcCcccccccc
Confidence 348899999999998854432 1 23344 88898877654444
No 253
>3pm0_A Cypib1, cytochrome P450 1B1; CYP1B1, monooxygenase, alpha-naphthoflavone, 17BETA-estradiol, oxidoreductase; HET: HEM BHF; 2.70A {Homo sapiens}
Probab=36.39 E-value=36 Score=24.39 Aligned_cols=48 Identities=10% Similarity=0.135 Sum_probs=33.8
Q ss_pred hhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCceecCee
Q psy11609 14 KDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCK 67 (83)
Q Consensus 14 ~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~ 67 (83)
...+.+..++||+|-.+++.. .-.|...+|+.++..+.. ++..+.+++
T Consensus 31 ~~~~~~~~~~yG~i~~~~~g~-----~~~vvv~dp~~i~~il~~-~~~~f~~r~ 78 (507)
T 3pm0_A 31 HLSFARLARRYGDVFQIRLGS-----CPIVVLNGERAIHQALVQ-QGSAFADRP 78 (507)
T ss_dssp HHHHHHHHHHHCSEEEEEETT-----EEEEEECSHHHHHHHHTT-TTTTSCBCC
T ss_pred HHHHHHHHHHhCCEEEEEECC-----ccEEEECCHHHHHHHHHh-CcHhhCCCC
Confidence 344777889999998888632 457888999999998843 334444444
No 254
>2k5n_A Putative cold-shock protein; GFT protein structure, PSI, nesgc, OB fold, cold shock structural genomics; NMR {Pectobacterium atrosepticum}
Probab=35.95 E-value=15 Score=21.49 Aligned_cols=42 Identities=7% Similarity=0.100 Sum_probs=21.4
Q ss_pred cCCceEEEEEeCCchHH---HHHHhhcCCceecCeeeEEEecCCCC
Q psy11609 35 QGGDRYGLVCFKKADDA---EKAILGSHEKHFFGCKIDVSPYHDVD 77 (83)
Q Consensus 35 d~~~g~afV~F~~pEdA---~~A~~~~ng~~~~g~~i~V~~a~g~~ 77 (83)
+..+|||||+=.+-.+- ..|+.. .|.+--|.++..++.+++.
T Consensus 11 n~~KGfGFI~~~dg~~dFvH~s~i~~-~g~l~~G~~V~F~~~~g~k 55 (74)
T 2k5n_A 11 FKDKGFGFIKDENGDNRYFHVIKVAN-PDLIKKDAAVTFEPTTNNK 55 (74)
T ss_dssp ETTTTEEEEEESSSCEEEEEGGGBSS-GGGCCTTCEEEEEEEECSS
T ss_pred ECCCCeEEEecCCCCceEEEHhHccc-CCCCCCCCEEEEEEEeCCC
Confidence 34688888875432110 122221 1245567777766666543
No 255
>2kcm_A Cold shock domain family protein; nucleic acid binding protein, beta barrel, structural genomi 2, protein structure initiative; NMR {Shewanella oneidensis}
Probab=35.36 E-value=14 Score=21.71 Aligned_cols=43 Identities=14% Similarity=0.268 Sum_probs=26.0
Q ss_pred cCCceEEEEEeCCchHH---HHHHhhcCC--ceecCeeeEEEecCCCC
Q psy11609 35 QGGDRYGLVCFKKADDA---EKAILGSHE--KHFFGCKIDVSPYHDVD 77 (83)
Q Consensus 35 d~~~g~afV~F~~pEdA---~~A~~~~ng--~~~~g~~i~V~~a~g~~ 77 (83)
+..+|||||+=.+-+|. ..|+....| .+--|.++..+..+++.
T Consensus 9 n~~KGfGFI~~~dG~DvFvH~s~i~~~~g~~~l~~G~~V~F~~~~g~k 56 (74)
T 2kcm_A 9 LAAKKYGFIQGDDGESYFLHFSELLDKKDEGKLVKGSMVHFDPTPTPK 56 (74)
T ss_dssp ETTTTEEEEEETTSCEECCCGGGSSCSGGGTTCCTTSEEEEEEECTTT
T ss_pred ECCCCEEEEecCCCceEEEEhhhcccCCCCCCCCCCCEEEEEEEECCC
Confidence 45799999986544333 334431233 45577888777766543
No 256
>3cam_A Cold-shock domain family protein; cold shock protein, chain SWAP, STRU genomics, oxford protein production facility, OPPF, gene RE; 2.60A {Neisseria meningitidis MC58}
Probab=34.91 E-value=16 Score=20.78 Aligned_cols=42 Identities=12% Similarity=0.115 Sum_probs=22.9
Q ss_pred cCCceEEEEEeCC-chHH---HHHHhhcC-CceecCeeeEEEecCCC
Q psy11609 35 QGGDRYGLVCFKK-ADDA---EKAILGSH-EKHFFGCKIDVSPYHDV 76 (83)
Q Consensus 35 d~~~g~afV~F~~-pEdA---~~A~~~~n-g~~~~g~~i~V~~a~g~ 76 (83)
+..+|||||+=.+ .+|. ..|+.... ..+--|.++..++.+++
T Consensus 10 n~~kGfGFI~~~~gg~dvFvH~s~i~~~g~~~l~~G~~V~f~~~~~~ 56 (67)
T 3cam_A 10 NDAKGFGFITPDEGGEDLFAHFSAINMEGFKTLKEGQRVSFDVTTGP 56 (67)
T ss_dssp ETTTTEEEEEETTSCCCEEEEGGGBCGGGGSSCCTTCEEEEEEEEET
T ss_pred ECCCCeEEEecCCCCccEEEEHHHccccCCCCCCCCCEEEEEEEECC
Confidence 4579999998554 2333 33443211 13446666666665543
No 257
>3b6h_A Prostacyclin synthase; enzyme-inhibitor complex, CYP8A1, cytochrome P450, endoplasmic reticulum, fatty acid biosynthesis, heme, iron, isomerase; HET: BOG MXD HEM; 1.62A {Homo sapiens} PDB: 2iag_A*
Probab=34.52 E-value=40 Score=24.27 Aligned_cols=38 Identities=13% Similarity=0.123 Sum_probs=28.2
Q ss_pred hHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhh
Q psy11609 15 DGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILG 57 (83)
Q Consensus 15 d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~ 57 (83)
..+.+..++||+|-++++.. .-.|...+|+.++..+..
T Consensus 42 ~~~~~l~~kYG~i~~v~lg~-----~~~vvv~~p~~~~~il~~ 79 (498)
T 3b6h_A 42 SFLTRMKEKHGDIFTILVGG-----RYVTVLLDPHSYDAVVWE 79 (498)
T ss_dssp HHHHHHHHHHCSEEEEEETT-----EEEEEECCGGGHHHHHTC
T ss_pred HHHHHHHHHcCCeEEEEECC-----eeEEEEcCHHHHHHHHhC
Confidence 34667789999998888743 345666899988888754
No 258
>1c9o_A CSPB, cold-shock protein; beta barrel, homodimer, transcription; 1.17A {Bacillus caldolyticus} SCOP: b.40.4.5 PDB: 2hax_A 1hz9_A 1hzb_A 1i5f_A 1hza_A 1hzc_A 3pf4_A 1csq_A 1nmf_A 1nmg_A 1csp_A 2f52_A 2es2_A 3pf5_A 2i5m_X 2i5l_X
Probab=34.50 E-value=17 Score=20.54 Aligned_cols=41 Identities=17% Similarity=0.202 Sum_probs=22.3
Q ss_pred cCCceEEEEEeCCchHH---HHHHhhcCC--ceecCeeeEEEecCCC
Q psy11609 35 QGGDRYGLVCFKKADDA---EKAILGSHE--KHFFGCKIDVSPYHDV 76 (83)
Q Consensus 35 d~~~g~afV~F~~pEdA---~~A~~~~ng--~~~~g~~i~V~~a~g~ 76 (83)
+..+|||||.=.+-+|. ..|+.. .| .+--|.++..+..+++
T Consensus 10 n~~kGfGFI~~~~g~dvFvH~s~i~~-~g~~~l~~G~~V~f~~~~~~ 55 (66)
T 1c9o_A 10 NNEKGYGFIEVEGGSDVFVHFTAIQG-EGFKTLEEGQEVSFEIVQGN 55 (66)
T ss_dssp ETTTTEEEEEETTEEEEEEEGGGBCS-SSCCCCCTTCEEEEEEEEET
T ss_pred ECCCCeEEEecCCCccEEEEHHHccc-cCCCCCCCCCEEEEEEEECC
Confidence 34789999985543333 233332 22 2346666666655543
No 259
>1g6p_A Cold shock protein TMCSP; greek-KEY, beta barrel, OB-fold, structural genomics; NMR {Thermotoga maritima} SCOP: b.40.4.5
Probab=33.57 E-value=13 Score=21.12 Aligned_cols=42 Identities=14% Similarity=0.102 Sum_probs=23.7
Q ss_pred cCCceEEEEEeCCchHH---HHHHhhcCC--ceecCeeeEEEecCCCC
Q psy11609 35 QGGDRYGLVCFKKADDA---EKAILGSHE--KHFFGCKIDVSPYHDVD 77 (83)
Q Consensus 35 d~~~g~afV~F~~pEdA---~~A~~~~ng--~~~~g~~i~V~~a~g~~ 77 (83)
+..+|||||.=.+.+|. ..|+.. .| .+--|.++..+..+++.
T Consensus 9 n~~kGfGFI~~~~g~dvFvH~s~i~~-~g~~~l~~G~~V~f~~~~~~~ 55 (66)
T 1g6p_A 9 DSKKGYGFITKDEGGDVFVHWSAIEM-EGFKTLKEGQVVEFEIQEGKK 55 (66)
T ss_dssp ETTTTEEEEEETTSCBCBBCSSSSCC-SSCCCCCSSSEEEEEEECSSS
T ss_pred ECCCCEEEEecCCCceEEEEhHHccc-cCCCCCCCCCEEEEEEEECCC
Confidence 45799999986544333 223322 22 23467777766666543
No 260
>2hfs_A Mevalonate kinase, putative; GHMP kinase, trypanosomatid parasite, transferase; 1.75A {Leishmania major} PDB: 2hfu_A*
Probab=33.14 E-value=56 Score=22.71 Aligned_cols=42 Identities=14% Similarity=0.305 Sum_probs=28.7
Q ss_pred HHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcC
Q psy11609 17 LYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSH 59 (83)
Q Consensus 17 L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~n 59 (83)
|.+...++|-+- +++.+.++.|..|.-+.+.+.|+++.+.+.
T Consensus 269 l~~~~~~~Ga~g-a~~sGaG~gg~v~~l~~~~~~a~~~~~~l~ 310 (332)
T 2hfs_A 269 IVQTCRTYGALG-AKLSGTGRGGIAVALAASSDQRDAIVKGLK 310 (332)
T ss_dssp HHHHHHHTTCSE-EEEESSCSSSEEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHcCCce-EEeccCCCCcEEEEEecCcccHHHHHHHHH
Confidence 455555678554 788888887788888887766665555443
No 261
>3a0j_A Cold shock protein; OB-fold, cytoplasm, transcription, structural genomics, NPPSFA; 1.65A {Thermus thermophilus}
Probab=32.85 E-value=18 Score=20.87 Aligned_cols=41 Identities=15% Similarity=0.064 Sum_probs=23.8
Q ss_pred cCCceEEEEEeCCchHH---HHHHhhcCC--ceecCeeeEEEecCCC
Q psy11609 35 QGGDRYGLVCFKKADDA---EKAILGSHE--KHFFGCKIDVSPYHDV 76 (83)
Q Consensus 35 d~~~g~afV~F~~pEdA---~~A~~~~ng--~~~~g~~i~V~~a~g~ 76 (83)
+..+|||||+=.+.+|. ..|+.. .| .+--|.++..++.+++
T Consensus 10 n~~kGfGFI~~~~g~dvFvH~s~i~~-~g~~~l~~G~~V~f~~~~~~ 55 (73)
T 3a0j_A 10 NAEKGYGFIEREGDTDVFVHYTAINA-KGFRTLNEGDIVTFDVEPGR 55 (73)
T ss_dssp ETTTTEEEEECTTSCCEEEEGGGBCS-SSCSSCCTTCEEEEEEECCS
T ss_pred ECCCCEEEEecCCCCcEEEEhhhccc-cCCCCCCCCCEEEEEEEECC
Confidence 44799999985544333 233332 22 3446777777776655
No 262
>2oi2_A Mevalonate kinase; enzyme-inhibitor complex, transferase; HET: DP6; 2.50A {Streptococcus pneumoniae}
Probab=32.23 E-value=94 Score=20.95 Aligned_cols=43 Identities=16% Similarity=0.150 Sum_probs=31.2
Q ss_pred HHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcC
Q psy11609 16 GLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSH 59 (83)
Q Consensus 16 ~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~n 59 (83)
.|.+...++|-.- +++.+.++.|..|.-++++++|+++.+.+.
T Consensus 238 ~l~~~~~~~Ga~g-a~~sGaG~Gg~v~~l~~~~~~~~~~~~~l~ 280 (292)
T 2oi2_A 238 SLVETALSHGALG-AKMSGGGLGGCIIALVTNLTHAQELAERLE 280 (292)
T ss_dssp HHHHHHHTTTCSE-EEEESSSSSSEEEEEESCHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCce-eeeccCCCCcEEEEEecCchHHHHHHHHHH
Confidence 3556666778554 889898888888888888777777666553
No 263
>1po5_A Cytochrome P450 2B4; oxidoreductase, membrane protein, CYP 2B4, CYP LM2, cytochro monooxygenase; HET: HEM; 1.60A {Oryctolagus cuniculus} SCOP: a.104.1.1 PDB: 3mvr_A* 2bdm_A* 3g5n_A* 3g93_A* 3kw4_A* 3me6_A* 1suo_A* 3r1a_A* 3r1b_A* 2q6n_A* 3tk3_A* 3ibd_A* 3qoa_A* 3qu8_A*
Probab=30.65 E-value=57 Score=23.44 Aligned_cols=37 Identities=19% Similarity=0.157 Sum_probs=28.3
Q ss_pred hHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHh
Q psy11609 15 DGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAIL 56 (83)
Q Consensus 15 d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~ 56 (83)
..+.+..++||+|-.+++.. .-.|...+|+.++..+.
T Consensus 34 ~~~~~l~~~yG~v~~~~~g~-----~~~v~v~~~~~i~~il~ 70 (476)
T 1po5_A 34 RSFLRLREKYGDVFTVYLGS-----RPVVVLCGTDAIREALV 70 (476)
T ss_dssp HHHHHHHHHHCSEEEEEETT-----EEEEEECSHHHHHHHHT
T ss_pred HHHHHHHHHhCCEEEEEECC-----ccEEEECCHHHHHHHHH
Confidence 44667778999998777622 34688999999999884
No 264
>3pm9_A Putative oxidoreductase; putative D-2-hydroxyglutarate dehydrogenase, putative D-LACT dehydrogenase; HET: FAD; 2.57A {Rhodopseudomonas palustris}
Probab=30.59 E-value=56 Score=24.92 Aligned_cols=44 Identities=16% Similarity=0.067 Sum_probs=32.9
Q ss_pred HHHHHhc----cCCceeEEEEeccC--C-ceEEEEEeCCchHHHHHHhhcC
Q psy11609 16 GLYHEYK----KHGKVSWVKIIGQG--G-DRYGLVCFKKADDAEKAILGSH 59 (83)
Q Consensus 16 ~L~~eF~----kfG~Itsv~V~~d~--~-~g~afV~F~~pEdA~~A~~~~n 59 (83)
+|++.|. -+|-||++.+--.+ + ...+++.|.+.++|-+|+.++.
T Consensus 202 dl~~l~~Gs~GtlGIIt~~tl~l~p~p~~~~~~~~~~~~~~~a~~~~~~~~ 252 (476)
T 3pm9_A 202 DLRDLFIGAEGTLGIITAATLKLFPKPRAVETAFVGLQSPDDALKLLGIAQ 252 (476)
T ss_dssp CCHHHHTTSTTSSCEEEEEEEECEECCSEEEEEEEEESCHHHHHHHHHHHH
T ss_pred CHHHHhccCCCCcEEEEEEEEEEeecCceeEEEEEEcCCHHHHHHHHHHHH
Confidence 5666553 67889998876544 2 5678999999999988887763
No 265
>3a4g_A Vitamin D hydroxylase; cytochrome P450, hemoprotein, monoox oxidoreductase; HET: HEM; 1.75A {Pseudonocardia autotrophica} PDB: 3a4h_A* 3a51_A* 3a4z_A* 3a50_A*
Probab=29.63 E-value=53 Score=23.54 Aligned_cols=36 Identities=11% Similarity=0.142 Sum_probs=27.7
Q ss_pred HHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhh
Q psy11609 17 LYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILG 57 (83)
Q Consensus 17 L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~ 57 (83)
.+++.++||+|-.+.+. +...|...+|++++.++..
T Consensus 25 ~~~~l~~yGpv~~~~~~-----~~~~vvv~~~~~v~~vl~~ 60 (411)
T 3a4g_A 25 AYAALRAEDPVRKLALP-----DGPVWLLTRYADVREAFVD 60 (411)
T ss_dssp HHHHHHHHCSEEEEEET-----TEEEEEECSHHHHHHHHTC
T ss_pred HHHHHHhcCCeeeccCC-----CCCEEEEecHHHHHHHHhC
Confidence 34445899999877763 3467889999999999865
No 266
>3abb_A CYP105D6, cytochrome P450 hydroxylase; oxidoreductase, heme, monooxygenase, macrolide, filipi metal-binding; HET: HEM; 2.30A {Streptomyces avermitilis}
Probab=29.42 E-value=69 Score=22.73 Aligned_cols=36 Identities=11% Similarity=0.190 Sum_probs=26.5
Q ss_pred HHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhh
Q psy11609 18 YHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILG 57 (83)
Q Consensus 18 ~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~ 57 (83)
+++.++||+|-.+++. .+.-.|...+|+.++.++..
T Consensus 30 ~~~l~~yGpv~~~~~~----g~~~~vvv~~~~~v~~vl~~ 65 (408)
T 3abb_A 30 YEERRGESPLTQVTLF----DGRPAWLITGHAEGRALLVD 65 (408)
T ss_dssp HHHHCCSSSEEEEECT----TSCEEEEECCHHHHHHHHTC
T ss_pred HHHHHhcCCeeeeecC----CCCcEEEEeCHHHHHHHHcC
Confidence 3444999999877651 23456778999999999864
No 267
>2hi4_A Cytochrome P450 1A2; CYP1A2, monooxygenase, drug metabolizing enzyme, alpha-naphthoflavone, benzo(H)flavone, 7,8- benzoflavone, oxidoreductase; HET: HEM BHF; 1.95A {Homo sapiens}
Probab=29.38 E-value=54 Score=23.73 Aligned_cols=38 Identities=16% Similarity=0.214 Sum_probs=28.8
Q ss_pred hHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhh
Q psy11609 15 DGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILG 57 (83)
Q Consensus 15 d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~ 57 (83)
..+.+..++||+|-.+++.. --+|...+|+.+++++..
T Consensus 39 ~~~~~l~~~yG~v~~~~~g~-----~~~vvv~~~~~i~~il~~ 76 (495)
T 2hi4_A 39 LALSRMSQRYGDVLQIRIGS-----TPVLVLSRLDTIRQALVR 76 (495)
T ss_dssp HHHHHHHHHHCSEEEEEETT-----EEEEEECSHHHHHHHHTT
T ss_pred HHHHHHHHHhCCEEEEEECC-----ccEEEECCHHHHHHHHHh
Confidence 34666778999998777632 346888999999999853
No 268
>2exu_A Transcription initiation protein SPT4/SPT5; helixs surrounding beta sheet; 2.23A {Saccharomyces cerevisiae}
Probab=29.22 E-value=68 Score=22.26 Aligned_cols=37 Identities=11% Similarity=-0.149 Sum_probs=30.2
Q ss_pred eeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCceec
Q psy11609 27 VSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFF 64 (83)
Q Consensus 27 Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~ 64 (83)
|.||-+ .+.=+||-||+=.++.+..+|++.+.+....
T Consensus 139 I~Si~~-~d~lkGYIyVEA~~~~~V~~ai~Gi~~vy~~ 175 (200)
T 2exu_A 139 ILSIFQ-RDNYTGRIYIEAPKQSVIEKFCNGVPDIYIS 175 (200)
T ss_dssp CCEEEC-CTTSTTEEEEECSCHHHHHHHHTTCTTEEEE
T ss_pred EEEEEe-cCCCcEEEEEEECCHHHHHHHHhhhhhhhcC
Confidence 776665 3446999999999999999999999986443
No 269
>3hul_A HSK, HK, homoserine kinase; structural genomics, putative homoserine kinase, THRB, amino-acid biosynthesis, ATP-binding, cytoplasm; 2.19A {Listeria monocytogenes}
Probab=28.50 E-value=1.2e+02 Score=21.17 Aligned_cols=41 Identities=15% Similarity=0.076 Sum_probs=27.5
Q ss_pred HHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCc
Q psy11609 17 LYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEK 61 (83)
Q Consensus 17 L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~ 61 (83)
|.+...+.|-.- +++.+.++-.||++. +++|+++.+.+...
T Consensus 230 l~~~~~~~Ga~g-a~~SGsGptv~al~~---~~~a~~v~~~l~~~ 270 (298)
T 3hul_A 230 IRDVAKNQGAYA-ACLSGAGPTVLVFAP---RNLANKLQTSLQTL 270 (298)
T ss_dssp HHHHHHTTTCCE-EEECTTSSCEEEEEC---GGGHHHHHHHHHTT
T ss_pred HHHHHHHCCCEE-EEEeccchheEEEEC---HHHHHHHHHHHHhc
Confidence 556667788444 888888877666644 67777766665543
No 270
>3czh_A Cytochrome P450 2R1; vitamin D, vitamin S 25-hydroxylase, drug metabolism, structural genomics, structural genomics consortium, SGC; HET: BCD HEM D2V; 2.30A {Homo sapiens} SCOP: a.104.1.1 PDB: 2ojd_A* 3c6g_A* 3dl9_A*
Probab=27.78 E-value=53 Score=23.75 Aligned_cols=38 Identities=11% Similarity=0.120 Sum_probs=28.5
Q ss_pred hHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhh
Q psy11609 15 DGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILG 57 (83)
Q Consensus 15 d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~ 57 (83)
..+.+..++||+|-.+++.. ...|...+|+.++.++..
T Consensus 38 ~~~~~l~~~yG~v~~~~~g~-----~~~v~v~~~~~~~~vl~~ 75 (481)
T 3czh_A 38 VYMRKQSQVYGEIFSLDLGG-----ISTVVLNGYDVVKECLVH 75 (481)
T ss_dssp HHHHHHHHHHCSEEEEEETT-----EEEEEEESHHHHHHHHTT
T ss_pred HHHHHHHHHhCCEEEEEECC-----ccEEEECCHHHHHHHHhh
Confidence 34666778999998777632 346778999999998854
No 271
>3fhk_A UPF0403 protein YPHP; disulfide isomerase, thioredoxin superfamily, CXC motif, structural genomics, surface entropy reduction, Ser, PSI-2; 2.30A {Bacillus subtilis}
Probab=27.56 E-value=26 Score=23.71 Aligned_cols=25 Identities=12% Similarity=0.186 Sum_probs=20.7
Q ss_pred eEEEEEeCCchHHHHHHhhcCCcee
Q psy11609 39 RYGLVCFKKADDAEKAILGSHEKHF 63 (83)
Q Consensus 39 g~afV~F~~pEdA~~A~~~~ng~~~ 63 (83)
..||-.++++|+.+.|+....|..|
T Consensus 25 ~~Gf~eL~T~e~Vd~a~~~~~GTtl 49 (147)
T 3fhk_A 25 GAGFEELTTAEEVENFMEKAEGTTL 49 (147)
T ss_dssp TTTCEECCSHHHHHHHHHHCCSEEE
T ss_pred HhCccccCCHHHHHHHHhcCCCcEE
Confidence 4578899999999999988777643
No 272
>3qz1_A Steroid 21-hydroxylase; P450 monooxygenase, oxidoreductase; HET: HEM 3QZ; 3.00A {Bos taurus}
Probab=27.50 E-value=39 Score=24.24 Aligned_cols=50 Identities=20% Similarity=0.179 Sum_probs=34.1
Q ss_pred chhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCceecCee
Q psy11609 12 SLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCK 67 (83)
Q Consensus 12 ~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~ 67 (83)
.....+.+..++||+|-.+++. +--.|...+|+.+++.+.. ++..+.+++
T Consensus 44 ~~~~~~~~l~~~yG~v~~~~~g-----~~~~vvv~~~~~~~~il~~-~~~~f~~r~ 93 (496)
T 3qz1_A 44 NLPIHLLSLTQKLGPVYRLRLG-----LQEVVVLNSKRTIEEAMIR-KWVDFAGRP 93 (496)
T ss_dssp CHHHHHHHGGGTSCSEEEECSS-----SSCEEEECSTTHHHHTTTT-SCSTTCBCC
T ss_pred cchHHHHHHHHHhCCEEEEEeC-----CcCEEEECCHHHHHHHHHh-CcHhhCCCC
Confidence 3445577888999999877652 2346788999999998854 344444444
No 273
>2cqy_A Propionyl-COA carboxylase alpha chain, mitochondrial; PCCA, B domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.45 E-value=68 Score=18.07 Aligned_cols=55 Identities=13% Similarity=0.167 Sum_probs=32.1
Q ss_pred HHHHhccCC-ceeEEEEeccC-CceEEEEEeCCchHHHHHHhhcCCc---eecCeeeEEEecC
Q psy11609 17 LYHEYKKHG-KVSWVKIIGQG-GDRYGLVCFKKADDAEKAILGSHEK---HFFGCKIDVSPYH 74 (83)
Q Consensus 17 L~~eF~kfG-~Itsv~V~~d~-~~g~afV~F~~pEdA~~A~~~~ng~---~~~g~~i~V~~a~ 74 (83)
+....+++| ++- +|..... +.|... ..+++|+..|++.+... .+.+.++.|+..-
T Consensus 37 ~~~~~~~~~~P~v-vKp~~~~~~~gv~~--v~~~~el~~~~~~~~~~~~~~~~~~~~lvee~i 96 (108)
T 2cqy_A 37 AVRIAREIGYPVM-IKASAGGGGKGMRI--AWDDEETRDGFRLSSQEAASSFGDDRLLIEKFI 96 (108)
T ss_dssp HHHHHHHHCSSEE-EEETTSCCTTTCEE--ESSHHHHHHHHHHHHHHHHHHTSSCCEEEEECC
T ss_pred HHHHHHhcCCCEE-EEECCCCCCccEEE--eCCHHHHHHHHHHHHHHHHhhcCCCcEEEeecc
Confidence 444444444 665 6655433 455544 48999999998765321 1124567777664
No 274
>2qhp_A Fructokinase; NP_810670.1, PFKB family carbohydrate kinase, structural genomics, joint center for structural genomics; HET: MSE; 1.80A {Bacteroides thetaiotaomicron vpi-5482}
Probab=27.38 E-value=92 Score=20.97 Aligned_cols=41 Identities=12% Similarity=-0.023 Sum_probs=27.9
Q ss_pred eEeeeecCCcchhhHHHHHhccCCceeEEEEeccCCceEEEE
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLV 43 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV 43 (83)
+.|++.+.+|..-+.|.+.+++.|- +.+.+..+.+.+.++|
T Consensus 41 ~~~~~~vG~D~~g~~~~~~l~~~gv-~~v~~~~~~~T~~~~v 81 (296)
T 2qhp_A 41 SRVVSAVGNDELGDEIMEVFKEKQL-KNQIERVDYPTGTVQV 81 (296)
T ss_dssp EEEEEEEESSHHHHHHHHHHHHTTC-CEEEEEESSCCEEEEE
T ss_pred eeEEEEeCCChHHHHHHHHHHHcCC-CEEeecCCCCceEEEE
Confidence 4688899999888889999999986 5454433333333333
No 275
>1gwi_A CYP154C1, cytochrome P450 154C1; oxidoreductase, macrolide antibiotics, 12- and 14- carbon macrolactone monooxygenase, heme; HET: HEM; 1.92A {Streptomyces coelicolor} SCOP: a.104.1.1
Probab=26.78 E-value=87 Score=22.34 Aligned_cols=36 Identities=8% Similarity=0.108 Sum_probs=26.9
Q ss_pred HHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhh
Q psy11609 18 YHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILG 57 (83)
Q Consensus 18 ~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~ 57 (83)
+++.++||+|-.+.+. .+.-.|...+|++++.++..
T Consensus 23 ~~~l~~yGpv~~~~~~----g~~~~vvv~~~~~v~~vl~~ 58 (411)
T 1gwi_A 23 SARLRAAGPLAAVELP----GGVPVWAVTHHAEAKALLTD 58 (411)
T ss_dssp HHHHHHTCSEEEEEET----TTEEEEEECSHHHHHHHHTC
T ss_pred HHHHHHhCCeeeeecC----CCccEEEEeCHHHHHHHHcC
Confidence 3344899999877651 23557889999999999864
No 276
>2yty_A Cold shock domain-containing protein E1; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold; NMR {Homo sapiens}
Probab=26.59 E-value=29 Score=20.88 Aligned_cols=47 Identities=17% Similarity=0.227 Sum_probs=24.9
Q ss_pred CCceeEEEEeccCCceEEEEEeCC-chHH---HHHHhhcCCceecCeeeEEEecCCC
Q psy11609 24 HGKVSWVKIIGQGGDRYGLVCFKK-ADDA---EKAILGSHEKHFFGCKIDVSPYHDV 76 (83)
Q Consensus 24 fG~Itsv~V~~d~~~g~afV~F~~-pEdA---~~A~~~~ng~~~~g~~i~V~~a~g~ 76 (83)
.|+|.+-. +|||||+=.+ .+|. -.|+......+--|.++..+..+++
T Consensus 20 ~G~Vk~f~------kGfGFI~~ddgg~DvFvH~S~i~~~~~~L~~G~~V~F~~~~g~ 70 (88)
T 2yty_A 20 LGYVATLK------DNFGFIETANHDKEIFFHYSEFSGDVDSLELGDMVEYSLSKGK 70 (88)
T ss_dssp EEEEEEEC------SSEEEEECSSSSCEEEEETTTCCSCTTTCCTTCEEEECCCCCS
T ss_pred eEEEEEEE------CCccEEecCCCCceEEEEEhhhccccCcCCCCCEEEEEEEECC
Confidence 46666442 7999998554 2332 2233222123346666666666554
No 277
>3v8d_A Cholesterol 7-alpha-monooxygenase; cytochrome, oxidoreductase; HET: HEM 0GV; 1.90A {Homo sapiens} PDB: 3sn5_A* 3dax_A*
Probab=26.09 E-value=65 Score=23.18 Aligned_cols=36 Identities=19% Similarity=0.162 Sum_probs=28.0
Q ss_pred HHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhh
Q psy11609 17 LYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILG 57 (83)
Q Consensus 17 L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~ 57 (83)
+.+..++||+|-.+.+. +.-.|...+|+.++.++..
T Consensus 39 ~~~l~~~yGpv~~~~lg-----~~~~vvv~~p~~v~~vl~~ 74 (491)
T 3v8d_A 39 LRANQRKHGHVFTCKLM-----GKYVHFITNPLSYHKVLCH 74 (491)
T ss_dssp HHHHHHHHCSEEEEEET-----TEEEEEECCGGGHHHHHSC
T ss_pred HHHHHHHcCCceEEEEC-----CEEEEEEcCHHHHHHHHhc
Confidence 56666789999888764 2457788899999999854
No 278
>1odo_A Putative cytochrome P450 154A1; P450 monooxygenase, oxidoreductase; HET: HEM PIM; 1.85A {Streptomyces coelicolor} SCOP: a.104.1.1
Probab=25.74 E-value=89 Score=22.14 Aligned_cols=35 Identities=9% Similarity=0.210 Sum_probs=26.5
Q ss_pred HHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhh
Q psy11609 18 YHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILG 57 (83)
Q Consensus 18 ~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~ 57 (83)
+.+.++||+|-.+.+. +.-.|...+|+.++.++..
T Consensus 21 ~~~l~~yGpv~~~~~~-----~~~~vvv~~~~~v~~vl~~ 55 (408)
T 1odo_A 21 HRTLREGGPATWVDVL-----GVQAWSVSDPVLLKQLLTS 55 (408)
T ss_dssp HHHHHTTCSEEEEEET-----TEEEEEECCHHHHHHHTTC
T ss_pred HHHHHHhCCeEEeccC-----CCCEEEECCHHHHHHHHcC
Confidence 3344999999877763 3457788999999999864
No 279
>3p8b_B Transcription antitermination protein NUSG; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus} PDB: 3qqc_D
Probab=25.66 E-value=56 Score=20.86 Aligned_cols=54 Identities=11% Similarity=0.054 Sum_probs=35.7
Q ss_pred hhhHHHHHhccCC-ceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCc-eecCee
Q psy11609 13 LKDGLYHEYKKHG-KVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEK-HFFGCK 67 (83)
Q Consensus 13 ~~d~L~~eF~kfG-~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~-~~~g~~ 67 (83)
+.+.|.......+ .|.+|.|.. .=+||-||.+..+++...+++...|- -|-|.|
T Consensus 18 v~~~L~~~~~~~~l~i~~v~vp~-~fPGYVfVe~~~~~~~~~~v~~t~gV~~fvg~~ 73 (152)
T 3p8b_B 18 TAKLIYSKVRTYNLPIYAILAPS-RVKGYIFVEAPNKGVVDEAIRGIRHARGVLPGE 73 (152)
T ss_dssp HHHHHHHHHHHHTCCCCEEEECT-TCCSEEEEEESSHHHHHHHHTTCTTEEEECSSC
T ss_pred HHHHHHHHHhhcCCcEEEEEeec-CCCcEEEEEEEchHHHHHHHhCCCCEEEeCCCC
Confidence 3444555443211 166676642 24999999999999999999999985 344433
No 280
>4f3q_A Transcriptional regulatory protein CBU_1566; YEBC family; 2.15A {Coxiella burnetii}
Probab=25.43 E-value=1.1e+02 Score=21.89 Aligned_cols=42 Identities=19% Similarity=0.393 Sum_probs=27.7
Q ss_pred eEeeeecCCcchhh--HHHHHhccCCceeEEEEeccCC-----ceEEEEEeCC
Q psy11609 2 ALFIYVVSDTSLKD--GLYHEYKKHGKVSWVKIIGQGG-----DRYGLVCFKK 47 (83)
Q Consensus 2 ~lfv~k~~d~~~~d--~L~~eF~kfG~Itsv~V~~d~~-----~g~afV~F~~ 47 (83)
++.|=-++|...+- ++++.|+|+| ..+...++ ++-|.|.|..
T Consensus 99 aviVe~lTDN~nRT~~~vR~~f~K~g----G~lg~~GsV~~~F~~kG~i~~~~ 147 (247)
T 4f3q_A 99 AVMVDCLTDNKNRTVAEVRHAFSKCD----GNLGTEGSVAYLFKQRGLITFPP 147 (247)
T ss_dssp EEEEEEEESCHHHHHHHHHHHHHHTT----CEECCTTSSGGGEEEEEEEEECT
T ss_pred EEEEEEeCCCHhHHHHHHHHHHHhcC----ceECCCCceeEEEeeeEEEEECC
Confidence 45566666666554 4999999998 33434333 6778888863
No 281
>3dax_A Cytochrome P450 7A1; cholesterol, cholesterol 7-alpha hydroxylase, structural genomics, structural genomics consortium, SGC, cholesterol metabolism; HET: HEM; 2.15A {Homo sapiens} PDB: 3sn5_A*
Probab=25.41 E-value=63 Score=23.08 Aligned_cols=38 Identities=21% Similarity=0.198 Sum_probs=28.0
Q ss_pred hHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhh
Q psy11609 15 DGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILG 57 (83)
Q Consensus 15 d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~ 57 (83)
..+.+..++||+|-.+++.. .-.|.-.+|+.++..+..
T Consensus 37 ~~~~~~~~kyG~i~~~~~g~-----~~~vvv~dp~~~~~il~~ 74 (491)
T 3dax_A 37 EFLRANQRKHGHVFTCKLMG-----KYVHFITNPLSYHKVLCH 74 (491)
T ss_dssp HHHHHHHHHHCSEEEEEETT-----EEEEEECCGGGTHHHHSC
T ss_pred HHHHHHHHhcCCeEEEEECC-----eEEEEEcChHHHHHHHcC
Confidence 44777889999998888743 345667789988877754
No 282
>3bsu_A Ribonuclease H1, RNAse H1; RNAse H, RNA/DNA hybrid; HET: DNA 5IU; 2.10A {Homo sapiens}
Probab=25.20 E-value=33 Score=18.84 Aligned_cols=22 Identities=18% Similarity=0.059 Sum_probs=16.6
Q ss_pred ceEEEEEeCCchHHHHHHhhcC
Q psy11609 38 DRYGLVCFKKADDAEKAILGSH 59 (83)
Q Consensus 38 ~g~afV~F~~pEdA~~A~~~~n 59 (83)
.+--|=-|.+.+||++.+...+
T Consensus 31 ~ga~yK~F~t~~eA~~~l~~~~ 52 (53)
T 3bsu_A 31 PAARFKKFATEDEAWAFVRKSA 52 (53)
T ss_dssp TTCEEEEESSHHHHHHHHHC--
T ss_pred CCCccCCCCCHHHHHHHHHhCC
Confidence 5567778999999999987643
No 283
>3s79_A Cytochrome P450 19A1; oxidoreductase; HET: HEM ASD; 2.75A {Homo sapiens} PDB: 3eqm_A* 3s7s_A* 4gl5_A* 4gl7_A*
Probab=25.09 E-value=63 Score=23.16 Aligned_cols=36 Identities=11% Similarity=-0.070 Sum_probs=27.4
Q ss_pred HHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhh
Q psy11609 17 LYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILG 57 (83)
Q Consensus 17 L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~ 57 (83)
+.+.-++||+|-.+++. +--.|...+|+.++.++..
T Consensus 74 ~~~~~~~yG~v~~~~~g-----~~~~vvv~~p~~~~~il~~ 109 (503)
T 3s79_A 74 CNYYNRVYGEFMRVWIS-----GEETLIISKSSSMFHIMKH 109 (503)
T ss_dssp HHHHHHHSCSEEEEESS-----SSEEEEECCHHHHHHHHHS
T ss_pred HHHHHHHhCCeEEEEeC-----CccEEEECCHHHHHHHHhc
Confidence 44556899999888763 2457888999999999853
No 284
>4hac_A Mevalonate kinase; GHMP, ATP binding, phosphorylation, transferase; 1.92A {Methanosarcina mazei}
Probab=24.82 E-value=1e+02 Score=21.71 Aligned_cols=41 Identities=17% Similarity=0.230 Sum_probs=27.5
Q ss_pred HHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcC
Q psy11609 17 LYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSH 59 (83)
Q Consensus 17 L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~n 59 (83)
|.+.-.+.|-.- +++.+.++.|..|.-+ ++++|+++.+.+.
T Consensus 262 l~~~a~~~Ga~g-a~~SGaG~GG~v~al~-~~~~a~~~~~~l~ 302 (321)
T 4hac_A 262 LIYSARAAGAFG-AKITGAGGGGCMVALT-APEKCNQVAEAVA 302 (321)
T ss_dssp HHHHHHHTTCSE-EEECSSCSSSEEEEEE-CSTTHHHHHHHHH
T ss_pred HHHHHHHCCCCE-EEECccCCCCEEEEEc-CHHHHHHHHHHHH
Confidence 555556677443 8888888766666556 6777776666554
No 285
>3b98_A Prostaglandin I2 synthase; prostacyclin synthase, cytochrome P450 8A1, CYP8A1, isomerase; HET: HEM; 2.08A {Danio rerio} PDB: 3b99_A*
Probab=24.74 E-value=66 Score=22.85 Aligned_cols=37 Identities=16% Similarity=0.174 Sum_probs=27.1
Q ss_pred HHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhh
Q psy11609 16 GLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILG 57 (83)
Q Consensus 16 ~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~ 57 (83)
.+.+..++||+|-.+++.. .-.|...+|+.++..+..
T Consensus 43 ~~~~l~~~yG~v~~~~~g~-----~~~vvv~~~~~~~~il~~ 79 (475)
T 3b98_A 43 FLTRMKEKHGDIFTVRAAG-----LYITVLLDSNCYDAVLSD 79 (475)
T ss_dssp HHHHHHHHHCSEEEEEETT-----EEEEEECCTTTHHHHHTC
T ss_pred HHHHHHHHhCCeEEEEECC-----ceEEEEeCHHHHHHHHcC
Confidence 3556677899998888732 345667889999888754
No 286
>1wfq_A UNR protein; beta-barrel, translational regulation, RNA chaperone, RNA/DN binding, QB fold, greek-KEY topology, structur genomics; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=24.66 E-value=33 Score=20.69 Aligned_cols=18 Identities=17% Similarity=0.357 Sum_probs=12.0
Q ss_pred CCceeEEEEeccCCceEEEEEeCC
Q psy11609 24 HGKVSWVKIIGQGGDRYGLVCFKK 47 (83)
Q Consensus 24 fG~Itsv~V~~d~~~g~afV~F~~ 47 (83)
.|+|.+. .+|||||.=.+
T Consensus 20 ~G~Vkwf------~KGfGFI~~dd 37 (89)
T 1wfq_A 20 TGVIEKL------LTSYGFIQCSE 37 (89)
T ss_dssp EEEEEEE------CSSEEEEEETT
T ss_pred ceEEEEE------eCCeeEEecCC
Confidence 4766644 28999997543
No 287
>2ytv_A Cold shock domain-containing protein E1; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold; NMR {Homo sapiens}
Probab=24.57 E-value=28 Score=20.49 Aligned_cols=18 Identities=22% Similarity=0.591 Sum_probs=12.2
Q ss_pred CCceeEEEEeccCCceEEEEEeCC
Q psy11609 24 HGKVSWVKIIGQGGDRYGLVCFKK 47 (83)
Q Consensus 24 fG~Itsv~V~~d~~~g~afV~F~~ 47 (83)
-|+|.++ .+|||||+-.+
T Consensus 10 ~G~V~~~------~KGfGFI~~dd 27 (79)
T 2ytv_A 10 RATVECV------KDQFGFINYEV 27 (79)
T ss_dssp CEEEEEC------CSSEEEESCCC
T ss_pred cEEEEEe------cccceeEeCCC
Confidence 4666643 58999997654
No 288
>2kp5_A Putative uncharacterized protein; beta-gamma crystallin, calcium-binding protein, bacterial, U function; NMR {Hahella chejuensis}
Probab=24.18 E-value=38 Score=19.79 Aligned_cols=22 Identities=14% Similarity=0.265 Sum_probs=17.3
Q ss_pred CCceeEEEEeccCCceEEEEEeCCch
Q psy11609 24 HGKVSWVKIIGQGGDRYGLVCFKKAD 49 (83)
Q Consensus 24 fG~Itsv~V~~d~~~g~afV~F~~pE 49 (83)
.-.|+||+|. .|+..+.|++|.
T Consensus 38 nd~isSirv~----~g~~~~~YE~~n 59 (92)
T 2kp5_A 38 NDDLSSARVP----SGLRLEVFQHNN 59 (92)
T ss_dssp TTTCCEEECC----TTCEEEEESSST
T ss_pred CCcEEEEEEC----CCCEEEEecCCC
Confidence 3689999994 478888888764
No 289
>2cd8_A Cytochrome P450 monooxygenase; oxidoreductase, PIKC, macrolide monooxygenase, antibiotic biosynthesis, heme, iron, metal-binding; HET: HEM PXI; 1.7A {Streptomyces venezuelae} PDB: 2c6h_A* 2bvj_A* 2ca0_A* 2c7x_A* 2vzm_A* 2vz7_A* 2vsj_A* 2wi9_A* 2whw_A*
Probab=24.08 E-value=94 Score=22.41 Aligned_cols=37 Identities=14% Similarity=0.142 Sum_probs=26.6
Q ss_pred HHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhh
Q psy11609 17 LYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILG 57 (83)
Q Consensus 17 L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~ 57 (83)
.+++.++||+|-.+++. .+.-.|...+|+.++.++..
T Consensus 51 ~~~~l~~yGpv~~~~~~----~~~~~vvv~~~~~v~~vl~~ 87 (436)
T 2cd8_A 51 TYARLRAEGPAHRVRTP----EGDEVWLVVGYDRARAVLAD 87 (436)
T ss_dssp HHHHHHTTCSEEEEECS----SCCEEEEECSHHHHHHHHHC
T ss_pred HHHHHHHhCCeeeeccC----CCCeEEEEcCHHHHHHHHcC
Confidence 34445899999877651 12336788999999999865
No 290
>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*
Probab=23.95 E-value=89 Score=22.29 Aligned_cols=58 Identities=17% Similarity=0.094 Sum_probs=34.0
Q ss_pred HHHHHhccCC-ceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCC------ceecC-eeeEEEecC
Q psy11609 16 GLYHEYKKHG-KVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHE------KHFFG-CKIDVSPYH 74 (83)
Q Consensus 16 ~L~~eF~kfG-~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng------~~~~g-~~i~V~~a~ 74 (83)
++....+++| ++- ||-..-.+.|.|..-.++++|+..|++.+.+ +.+.| +.+.|....
T Consensus 138 ~~~~~~~~~g~P~v-vKp~~~~~~g~Gv~~v~~~~el~~~~~~~~~~~~lvEe~i~g~~E~~v~~~~ 203 (389)
T 3q2o_A 138 QLTEAIAELSYPSV-LKTTTGGYDGKGQVVLRSEADVDEARKLANAAECILEKWVPFEKEVSVIVIR 203 (389)
T ss_dssp HHHHHHHHHCSSEE-EEESSCCSSSCCEEEESSGGGHHHHHHHHHHSCEEEEECCCCSEEEEEEEEE
T ss_pred HHHHHHHhcCCCEE-EEeCCCCCCCCCeEEECCHHHHHHHHHhcCCCCEEEEecccCceEEEEEEEE
Confidence 3444455555 554 5544332334555566899999999876532 34454 777766553
No 291
>2ytx_A Cold shock domain-containing protein E1; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold; NMR {Homo sapiens}
Probab=23.69 E-value=23 Score=21.67 Aligned_cols=38 Identities=11% Similarity=0.155 Sum_probs=18.5
Q ss_pred CceEEEEEeCCc-hHH---HHHHhhcCCceecCeeeEEEecC
Q psy11609 37 GDRYGLVCFKKA-DDA---EKAILGSHEKHFFGCKIDVSPYH 74 (83)
Q Consensus 37 ~~g~afV~F~~p-EdA---~~A~~~~ng~~~~g~~i~V~~a~ 74 (83)
.+|||||.=.+- +|. -.|+......+--|.++..+..+
T Consensus 27 ~KGfGFI~~ddg~~DvFvH~s~i~~~~~~L~~G~~V~F~v~~ 68 (97)
T 2ytx_A 27 KEAFGFIERGDVVKEIFFHYSEFKGDLETLQPGDDVEFTIKD 68 (97)
T ss_dssp CSSEEEEECSSSCCCEEEETTTCCSCTTSCCSCCEEEEEECC
T ss_pred eCCceEEecCCCCceEEEEehHhccccCCCCCCCEEEEEEEc
Confidence 689999975432 332 22332221223355555555544
No 292
>1kon_A Protein YEBC, YEBC; alpha/beta, two-domains, montreal-kingston bacterial structural genomics initiative, BSGI, structural genomics; 2.20A {Escherichia coli} SCOP: e.39.1.1
Probab=23.56 E-value=1.9e+02 Score=20.68 Aligned_cols=42 Identities=26% Similarity=0.514 Sum_probs=27.3
Q ss_pred eEeeeecCCcchhh--HHHHHhccCCceeEEEEeccCC-----ceEEEEEeCC
Q psy11609 2 ALFIYVVSDTSLKD--GLYHEYKKHGKVSWVKIIGQGG-----DRYGLVCFKK 47 (83)
Q Consensus 2 ~lfv~k~~d~~~~d--~L~~eF~kfG~Itsv~V~~d~~-----~g~afV~F~~ 47 (83)
++.|=-++|...+- ++++.|+|+|= .+-..++ ++-|.|.|..
T Consensus 99 aiiVe~lTDN~nRt~~~vR~~f~K~GG----~lg~~GsV~~~F~~kG~i~~~~ 147 (249)
T 1kon_A 99 AIMIECLSDNRNRTVAEVRHAFSKCGG----NLGTDGSVAYLFSKKGVISFEK 147 (249)
T ss_dssp EEEEEEEESCHHHHHHHHHHHHHTTTC----EECCTTSSGGGEEEEEEEEESS
T ss_pred EEEEEEecCCHHHHHHHHHHHHhhcCc----eecCCCchhhhhheeeEEEECC
Confidence 35566666665544 49999999962 3333333 6678888884
No 293
>1w2w_A 5-methylthioribose-1-phosphate isomerase; EIF2B, methionine salvage pathway, translation initiation, oxidoreductase; 1.75A {Saccharomyces cerevisiae} SCOP: c.124.1.5
Probab=23.19 E-value=73 Score=22.20 Aligned_cols=31 Identities=23% Similarity=0.117 Sum_probs=27.9
Q ss_pred EEEEeccC--CceEEEEEeCCchHHHHHHhhcC
Q psy11609 29 WVKIIGQG--GDRYGLVCFKKADDAEKAILGSH 59 (83)
Q Consensus 29 sv~V~~d~--~~g~afV~F~~pEdA~~A~~~~n 59 (83)
+|.|..+. |..+-||..++.+|+-+|++.|.
T Consensus 17 ~l~iLDQ~~LP~e~~~~~~~~~~~v~~AIk~M~ 49 (211)
T 1w2w_A 17 SVKVLDQLLLPYTTKYVPIHTIDDGYSVIKSMQ 49 (211)
T ss_dssp EEEEECTTTTTTCCCEEECCSHHHHHHHHHTTS
T ss_pred EEEEEecCCCCCcEEEEEeCCHHHHHHHHHCCc
Confidence 58888876 88999999999999999999986
No 294
>2fdv_A Cytochrome P450 2A6; CYP2A6, monooxygenase, drug metabolizing enzyme, coumarin 7-hydroxylase, nicotine oxidase, oxidoreductase; HET: HEM D2G; 1.65A {Homo sapiens} PDB: 1z11_A* 1z10_A* 2fdu_A* 2fdw_A* 2fdy_A* 3t3r_A* 2pg5_A* 2pg7_A* 2pg6_A* 3t3q_A* 3ebs_A* 2p85_A* 3t3s_A*
Probab=22.49 E-value=88 Score=22.41 Aligned_cols=37 Identities=16% Similarity=0.186 Sum_probs=27.5
Q ss_pred hHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHh
Q psy11609 15 DGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAIL 56 (83)
Q Consensus 15 d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~ 56 (83)
..+.+..++||+|-.+++.. --.|...+|+.++..+.
T Consensus 34 ~~~~~l~~~yG~v~~~~~~~-----~~~v~v~~~~~i~~il~ 70 (476)
T 2fdv_A 34 NSLMKISERYGPVFTIHLGP-----RRVVVLCGHDAVREALV 70 (476)
T ss_dssp HHHHHHHHHHCSEEEEEETT-----EEEEEECSHHHHHHHHT
T ss_pred HHHHHHHHHhCCEEEEEECC-----ccEEEECCHHHHHHHHh
Confidence 34666778999998777622 34677899999999884
No 295
>2uuu_A Alkyldihydroxyacetonephosphate synthase; transferase, lavoprotein, lipid synthesis, peroxisomal disor; HET: FAD PL3; 1.95A {Dictyostelium discoideum} PDB: 2uuv_A*
Probab=22.46 E-value=91 Score=24.46 Aligned_cols=45 Identities=13% Similarity=-0.027 Sum_probs=33.4
Q ss_pred hHHHHHhc----cCCceeEEEEeccC--C-ceEEEEEeCCchHHHHHHhhcC
Q psy11609 15 DGLYHEYK----KHGKVSWVKIIGQG--G-DRYGLVCFKKADDAEKAILGSH 59 (83)
Q Consensus 15 d~L~~eF~----kfG~Itsv~V~~d~--~-~g~afV~F~~pEdA~~A~~~~n 59 (83)
-+|++.|- -+|-||++.+--.+ + ...+.+.|.+.++|-+|+.++.
T Consensus 288 ~dl~~~~~GseGtlGIIT~~tlrl~p~p~~~~~~~~~f~~~~~a~~~~~~~~ 339 (584)
T 2uuu_A 288 INYKHIILGSEGTLGIITEAVMKVHAVPQAVEYYGFLFPTFAHAVSALQQIR 339 (584)
T ss_dssp CCTHHHHTTCTTSSCEEEEEEEECEECCSEEEEEEEEESSHHHHHHHHHHHH
T ss_pred cchhhhhccCCCCcEEEEEEEEEEEecccceEEEEEEcCCHHHHHHHHHHHH
Confidence 34666543 67889998876654 2 4688999999999998887653
No 296
>2zbx_A Cytochrome P450-SU1; beta prism, heme, iron, metal-binding, monooxygenase, oxidoreductase; HET: HEM; 1.50A {Streptomyces griseolus} PDB: 2zby_A* 2zbz_A* 3cv8_A* 3cv9_A*
Probab=22.43 E-value=87 Score=22.29 Aligned_cols=37 Identities=19% Similarity=0.220 Sum_probs=26.5
Q ss_pred HHHHhccC-CceeEEEEeccCCceEEEEEeCCchHHHHHHhh
Q psy11609 17 LYHEYKKH-GKVSWVKIIGQGGDRYGLVCFKKADDAEKAILG 57 (83)
Q Consensus 17 L~~eF~kf-G~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~ 57 (83)
.+.+.++| |+|-.+.+. .+.-.|...+|+.++.++..
T Consensus 29 ~~~~l~~~yGpv~~~~~~----g~~~~vvv~~~~~v~~vl~~ 66 (412)
T 2zbx_A 29 GYAQLRDTPGPLHRVTLY----DGRQAWVVTKHEAARKLLGD 66 (412)
T ss_dssp HHHHHHHSSSSEEEEECT----TSCEEEEECSHHHHHHHHTC
T ss_pred HHHHHHhcCCCeEeeccC----CCCcEEEEecHHHHHHHHcC
Confidence 34445888 999876641 23456778999999999864
No 297
>1r9o_A Cytochrome P450 2C9; monooxygenase, drug metabolizing enzyme, oxidoreductas; HET: HEM FLP; 2.00A {Homo sapiens} SCOP: a.104.1.1 PDB: 1og5_A* 1og2_A* 2nnj_A* 1pq2_A* 2nni_A* 2nnh_A* 2vn0_A* 1nr6_A* 1dt6_A* 1n6b_A*
Probab=21.92 E-value=66 Score=23.02 Aligned_cols=37 Identities=16% Similarity=0.074 Sum_probs=27.2
Q ss_pred HHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhh
Q psy11609 16 GLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILG 57 (83)
Q Consensus 16 ~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~ 57 (83)
.+.+..++||+|-.+++. + ...|...+|+.++..+..
T Consensus 36 ~~~~l~~~yG~v~~~~~g---~--~~~v~v~~~~~~~~il~~ 72 (477)
T 1r9o_A 36 SLTNLSKVYGPVFTLYFG---L--KPIVVLHGYEAVKEALID 72 (477)
T ss_dssp HHHHHHHHHCSEEEEESS---S--CEEEEECSHHHHHHHHTT
T ss_pred HHHHHHHHhCCEEEEEEC---C--CcEEEECCHHHHHHHHhc
Confidence 356677899999876642 1 246889999999998843
No 298
>2lss_A Cold shock-like protein; CSD, CSP, oligonucleotide binding F fold, RNA binding protein, DNA binding protein; NMR {Rickettsia rickettsii}
Probab=27.38 E-value=19 Score=20.60 Aligned_cols=40 Identities=10% Similarity=0.104 Sum_probs=20.5
Q ss_pred cCCceEEEEEeCC-chHH---HHHHhhcCC-c-eecCeeeEEEecCC
Q psy11609 35 QGGDRYGLVCFKK-ADDA---EKAILGSHE-K-HFFGCKIDVSPYHD 75 (83)
Q Consensus 35 d~~~g~afV~F~~-pEdA---~~A~~~~ng-~-~~~g~~i~V~~a~g 75 (83)
+..+|||||.=.+ .+|. ..|+.. .| + +--|.++..++.++
T Consensus 13 n~~kGfGFI~~~~gg~dvFvH~s~i~~-~g~~~l~~G~~V~f~~~~~ 58 (70)
T 2lss_A 13 NSTKNFGFIEQDNGGKDVFVHKSAVDA-AGLHSLEEGQDVIFDLEEK 58 (70)
Confidence 3479999998554 2443 333332 22 2 33555555555443
No 299
>3gw9_A Sterol 14alpha-demethylase; CYP51, cytochrome P450, heme, oxidoreductase, monooxygenase, sterol biosynthesis, lipids, endoplasmic reticulum; HET: HEM VNI; 1.87A {Trypanosoma brucei} PDB: 3tik_A* 3g1q_A* 3p99_A* 2wv2_A* 2x2n_A* 3khm_A* 3k1o_A* 3ksw_A* 2wx2_A* 2wuz_A* 3l4d_A*
Probab=21.57 E-value=74 Score=22.26 Aligned_cols=46 Identities=7% Similarity=0.051 Sum_probs=32.1
Q ss_pred HHHHHhccCC-ceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCceecCee
Q psy11609 16 GLYHEYKKHG-KVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCK 67 (83)
Q Consensus 16 ~L~~eF~kfG-~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~ 67 (83)
-+.+..++|| +|-.+++.. .-.|...+|+.++..+.. ++..+..++
T Consensus 28 ~~~~~~~~yG~~i~~~~~~~-----~~~vvv~~p~~~~~il~~-~~~~~~~~~ 74 (450)
T 3gw9_A 28 FMQECKRQLKSGIFTINIVG-----KRVTIVGDPHEHSRFFLP-RNEVLSPRE 74 (450)
T ss_dssp HHHHHHHHHTCSEEEEEETT-----EEEEEECCGGGTHHHHSS-CTTTEESTG
T ss_pred HHHHHHHHhCCCeEEEEECC-----EeEEEEeCHHHHHHHHhC-Chhhccchh
Confidence 3667788999 998888743 346778899999888754 444444443
No 300
>1pa4_A Probable ribosome-binding factor A; structural genomics, distant homology, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Mycoplasma pneumoniae} SCOP: d.52.7.1
Probab=21.51 E-value=19 Score=22.55 Aligned_cols=36 Identities=17% Similarity=0.019 Sum_probs=21.6
Q ss_pred CceeEEEEeccCCceEEEEEeCC---chHHHHHHhhcCC
Q psy11609 25 GKVSWVKIIGQGGDRYGLVCFKK---ADDAEKAILGSHE 60 (83)
Q Consensus 25 G~Itsv~V~~d~~~g~afV~F~~---pEdA~~A~~~~ng 60 (83)
=+||.|.|..|-+.--.||..-. .+++-+|++...|
T Consensus 33 vtVt~V~vs~Dl~~AkVyvs~~~~~~~~~~~~~L~~a~g 71 (116)
T 1pa4_A 33 GHVTHVKLSDDLLHVTVYLDCYNREQIDRVVGAFNQAKG 71 (116)
T ss_dssp HCCSCCEEETTTTEEEECCCCSSSSSHHHHHHHHHHTHH
T ss_pred eEEeEEEECCCCCEEEEEEEeCCchhHHHHHHHHHHhHH
Confidence 47889999887654444444322 2445556666555
No 301
>2ij2_A Cytochrome P450 BM3; monoxygenase, heme binding protein, atomic resolution, oxidoreductase; HET: HEM; 1.20A {Bacillus megaterium} SCOP: a.104.1.1 PDB: 2hpd_A* 1fag_A* 1jpz_A* 1zo9_A* 1zo4_A* 1zoa_A* 3m4v_A* 3ekb_A* 3ben_A* 1fah_A* 2nnb_A* 3kx3_A* 3ekd_A* 3ekf_A* 1smi_A* 1smj_A* 3kx4_A* 2ij3_A* 2ij4_A* 3hf2_A* ...
Probab=21.44 E-value=94 Score=22.38 Aligned_cols=36 Identities=8% Similarity=-0.099 Sum_probs=28.1
Q ss_pred HHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHh
Q psy11609 16 GLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAIL 56 (83)
Q Consensus 16 ~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~ 56 (83)
.+.+..++||+|-.+++. +-..|...+|+.++..+.
T Consensus 28 ~~~~~~~~yG~v~~~~~~-----~~~~v~v~~~~~~~~il~ 63 (470)
T 2ij2_A 28 ALMKIADELGEIFKFEAP-----GRVTRYLSSQRLIKEACD 63 (470)
T ss_dssp HHHHHHHHHCSEEEEEET-----TEEEEEECCHHHHHHHTC
T ss_pred HHHHHHHHhCCeEEEecC-----CccEEEECCHHHHHHHHh
Confidence 466677899999877763 346788999999999874
No 302
>1d4b_A CIDE B, human cell death-inducing effector B; alpha/beta roll, apoptosis; NMR {Homo sapiens} SCOP: d.15.2.1
Probab=21.37 E-value=1.4e+02 Score=19.35 Aligned_cols=49 Identities=10% Similarity=0.007 Sum_probs=35.1
Q ss_pred eEEEEec-cCCceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEec-CCCCccc
Q psy11609 28 SWVKIIG-QGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPY-HDVDFEL 80 (83)
Q Consensus 28 tsv~V~~-d~~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a-~g~~~e~ 80 (83)
.-++|.. +++.++|.++-+=.|=-.||.+.++= ..++.+-++ +|.+.||
T Consensus 36 kPfKV~~~~Rs~k~GV~A~SL~EL~~K~~~~l~l----~~~~~lvLeeDGT~Vdd 86 (122)
T 1d4b_A 36 RPFRVCDHKRTIRKGLTAATRQELLAKALETLLL----NGVLTLVLEEDGTAVDS 86 (122)
T ss_dssp EEEEEECSSSSCEEEEEECCSSTHHHHHHHHHSC----CSSCEEEETTTTEEECS
T ss_pred CCEEEecCCCCeEEeEEcCCHHHHHHHHHHHhcc----CCCcEEEEEeCCcEEec
Confidence 4466664 45899999998777777888776553 466677775 4988877
No 303
>1h95_A CSD, Y-box binding protein; translation factor, transcription factor, OB-fold, 5- stranded anti-parallel beta-barrel, single stranded DNA binding; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=21.35 E-value=81 Score=18.29 Aligned_cols=42 Identities=14% Similarity=0.154 Sum_probs=22.3
Q ss_pred cCCceEEEEEeCC-chHH---HHHHhhcC---C--ceecCeeeEEEecCCC
Q psy11609 35 QGGDRYGLVCFKK-ADDA---EKAILGSH---E--KHFFGCKIDVSPYHDV 76 (83)
Q Consensus 35 d~~~g~afV~F~~-pEdA---~~A~~~~n---g--~~~~g~~i~V~~a~g~ 76 (83)
+..+|||||+=.+ .+|. ..|+...+ | .+--|.++..++.+++
T Consensus 17 n~~kGfGFI~~~~gg~DvFvH~s~i~~~~~~~g~~~l~~G~~V~f~~~~~~ 67 (79)
T 1h95_A 17 NVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 67 (79)
T ss_dssp ETTTTEEEEEEGGGTEEEEEEGGGBCSCCCSCCSCSCCSSCEEEEEEEECS
T ss_pred ECCCCcEEEecCCCCccEEEEhHHccccccccccccCCCCCEEEEEEEECC
Confidence 4579999998543 2232 23443321 2 2335666666665543
No 304
>2pg9_A Phosphomevalonate kinase; GHMP kinase superfamily, transferase; HET: PMV ANP; 1.90A {Streptococcus pneumoniae} PDB: 1k47_A* 3gon_A*
Probab=21.25 E-value=1.7e+02 Score=20.81 Aligned_cols=56 Identities=14% Similarity=-0.009 Sum_probs=35.6
Q ss_pred hHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecC
Q psy11609 15 DGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYH 74 (83)
Q Consensus 15 d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~ 74 (83)
+.|.+...++|-+ +++.+.+..+..|.-+.++++|++..+++... .-.+++++.+.
T Consensus 277 ~~l~~~a~~~Ga~--ak~sGaGgGg~vial~~~~~~~~~~~~~l~~~--g~~~~~~~~~~ 332 (337)
T 2pg9_A 277 RQLKEASQDLQAV--AKSSGAGGGDCGIALSFDAQSTKTLKNRWADL--GIELLYQERIG 332 (337)
T ss_dssp HHHHHTTTTSSEE--EEECTTCSSSEEEEEECSHHHHHHHHHHHHHT--TCEEEEEEEC-
T ss_pred HHHHHHHHHCCCE--EEEeCCCCccEEEEEECCHHHHHHHHHHHHHC--CCEEEEEeecc
Confidence 3467777888965 78888776677777777777776665554322 12355655553
No 305
>3oo3_A OXY protein; cytochrome P450, monooxygenase, PCD-teicoplanin aglycone, oxidoreductase; HET: HEM; 2.20A {Actinoplanes teichomyceticus} SCOP: a.104.1.0 PDB: 3o1a_A*
Probab=21.05 E-value=42 Score=23.50 Aligned_cols=48 Identities=15% Similarity=0.151 Sum_probs=29.5
Q ss_pred HHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCceecCee
Q psy11609 17 LYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCK 67 (83)
Q Consensus 17 L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~ 67 (83)
.+.+..+||+|-.+.+.. ...|...|...+|+.++.++.. ...+..++
T Consensus 17 ~~~~lr~yGpv~~~~~~~-~~~g~~~vvv~~~~~v~~vl~~--~~~f~~~~ 64 (384)
T 3oo3_A 17 EFEELQKAGPLHEYDTEP-GMDGRKQWLVTGHDEVRAILAD--HERFSSMR 64 (384)
T ss_dssp HHHHHHHTCSEECCCCC-------CEEEECCHHHHHHHHHC--TTTEECSC
T ss_pred HHHHHHhcCCeeeccccc-ccCCCCEEEEcCHHHHHHHHhC--chhccCCc
Confidence 455567999987555311 0123457899999999999943 34454444
No 306
>3i2z_B RNA chaperone, negative regulator of CSPA transcription; beta barrel, DNA binding protein/transcription, cytoplasm, gene regulation; 1.10A {Salmonella typhimurium} SCOP: b.40.4.5 PDB: 2l15_A 1mjc_A 3mef_A
Probab=21.00 E-value=86 Score=17.76 Aligned_cols=41 Identities=12% Similarity=0.181 Sum_probs=23.4
Q ss_pred cCCceEEEEEeCCc-hHH---HHHHhhcCC--ceecCeeeEEEecCCC
Q psy11609 35 QGGDRYGLVCFKKA-DDA---EKAILGSHE--KHFFGCKIDVSPYHDV 76 (83)
Q Consensus 35 d~~~g~afV~F~~p-EdA---~~A~~~~ng--~~~~g~~i~V~~a~g~ 76 (83)
+..+|||||.=.+. +|. ..|+.. +| .+-.|.++..+..+++
T Consensus 14 n~~kGfGFI~~~~g~~dvFvH~s~i~~-~g~~~l~~G~~V~f~~~~~~ 60 (71)
T 3i2z_B 14 NESKGFGFITPEDGSKDVFVHFSAIQT-NGFKTLAEGQRVEFEITNGA 60 (71)
T ss_dssp ETTTTEEEEEETTCCCCEEEEGGGBCC-SSCCCCCTTCEEEEEEEEET
T ss_pred ECCCCcEEEecCCCCccEEEEhHHccc-ccCcCCCCCCEEEEEEEECC
Confidence 45799999986554 343 334432 22 2346666666665544
No 307
>2od0_A Hypothetical protein VP1028; structural genomics, unknown functi 2, protein structure initiative, midwest center for structu genomics; 1.95A {Vibrio parahaemolyticus} SCOP: d.198.5.2
Probab=20.65 E-value=1.2e+02 Score=18.11 Aligned_cols=48 Identities=8% Similarity=0.152 Sum_probs=33.1
Q ss_pred chhhHHHHHhccCCceeEEEEeccC-----CceEEEEE-----eCCchHHHHHHhhcC
Q psy11609 12 SLKDGLYHEYKKHGKVSWVKIIGQG-----GDRYGLVC-----FKKADDAEKAILGSH 59 (83)
Q Consensus 12 ~~~d~L~~eF~kfG~Itsv~V~~d~-----~~g~afV~-----F~~pEdA~~A~~~~n 59 (83)
+.++.+.+.++..|.|+.-+.++-- ..=||.|+ .|-.+++...+.+..
T Consensus 4 ~~~~~i~e~l~~lg~i~~r~MFGg~~l~~~g~mfalv~d~~L~lR~~~~~~~~~~~~g 61 (105)
T 2od0_A 4 PILKDSMKLFEALGTIKSRSMFGGFGLFADETMFALVVNNQLHIRADQQTSSDFETQG 61 (105)
T ss_dssp THHHHHHHHHGGGSCCEEEEETTEEEEEETTEEEEEEETTEEEEECCHHHHHHHHHTT
T ss_pred hHHHHHHHHHhccCCceEeeccCcEEEEECCEEEEEEECCEEEEEeCHHHHHHHHhcC
Confidence 4566788999999999977776632 34466654 555677777676653
No 308
>3k17_A LIN0012 protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics, NEW YORK SGX research center for structural genomics; HET: PGE; 2.10A {Listeria innocua}
Probab=20.55 E-value=46 Score=24.26 Aligned_cols=42 Identities=26% Similarity=0.265 Sum_probs=30.5
Q ss_pred HHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcC
Q psy11609 16 GLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSH 59 (83)
Q Consensus 16 ~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~n 59 (83)
.|.+.-.++|-+ .++.+.+..|+.+.-..++++|++..+++.
T Consensus 299 ~l~~~a~~~Ga~--ak~sGAGgGg~vial~~~~~~~~~l~~~l~ 340 (365)
T 3k17_A 299 ELADSAENMGGA--GKSSGSGGGDCGIAFSKTKELAEKLVNEWE 340 (365)
T ss_dssp HHHHHHHHTTSE--EEECTTCSSSEEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCE--EEecCCCCCCEEEEEECCHHHHHHHHHHHH
Confidence 466767788876 788888777888888888777766555443
No 309
>2eel_A Cell death activator CIDE-A; CIDE-N domain, cell death- inducing DFFA-like effector A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.47 E-value=1.4e+02 Score=18.33 Aligned_cols=48 Identities=6% Similarity=0.019 Sum_probs=33.1
Q ss_pred EEEec-cCCceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEec-CCCCccc
Q psy11609 30 VKIIG-QGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPY-HDVDFEL 80 (83)
Q Consensus 30 v~V~~-d~~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a-~g~~~e~ 80 (83)
++|.. +++.++|.++-+=.|=-.||...++ +...++.+-+. +|...+|
T Consensus 12 fkV~~~~Rs~k~GV~A~sL~EL~~K~~~~l~---l~~~~~~lvLeeDGT~Vdd 61 (91)
T 2eel_A 12 FRVSNHDRSSRRGVMASSLQELISKTLDALV---IATGLVTLVLEEDGTVVDT 61 (91)
T ss_dssp EEEECTTSCCCEEEEESSHHHHHHHHHHHTT---CSSSCEEEEETTTCCBCCC
T ss_pred EEEecCCCCeEEeEEcCCHHHHHHHHHHHhc---CCCCCcEEEEeeCCcEEec
Confidence 55553 3378999998776666677777655 23346777776 4998877
No 310
>1vm7_A Ribokinase; TM0960, structural genomics, JCSG, protein struc initiative, PSI, joint center for structural genomics, TRAN; 2.15A {Thermotoga maritima} SCOP: c.72.1.1
Probab=20.28 E-value=2.2e+02 Score=19.52 Aligned_cols=42 Identities=17% Similarity=0.129 Sum_probs=28.6
Q ss_pred eEeeeecCCcchhhHHHHHhccCCceeEEEEeccCCceEEEEEe
Q psy11609 2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCF 45 (83)
Q Consensus 2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F 45 (83)
+-|++.+.+|..-+.|.+.+++.|- .+.+....+-+..++..
T Consensus 69 ~~~i~~vG~D~~G~~l~~~L~~~gV--~v~~~~~~~T~~~~~~~ 110 (311)
T 1vm7_A 69 CRFVTCIGNDDYSDLLIENYEKLGI--TGYIRVSLPTGRAFIEV 110 (311)
T ss_dssp EEEEEEECSSHHHHHHHHHHHHTTE--EEEEECSSCCCEEEEEE
T ss_pred eEEEEEECCChHHHHHHHHHHHCCC--EEEEcCCCCCeEEEEEE
Confidence 5688999999888889999999984 44443333344444433
No 311
>3aqq_A Calcium-regulated heat stable protein 1; compact beta-barrel, cold shock domain, ssDNA binding, DNA B protein; 2.80A {Homo sapiens}
Probab=20.21 E-value=40 Score=22.36 Aligned_cols=37 Identities=8% Similarity=-0.009 Sum_probs=20.0
Q ss_pred cCCceEEEEEeCCc-hHH---HHHHhhcCCceecCeeeEEEe
Q psy11609 35 QGGDRYGLVCFKKA-DDA---EKAILGSHEKHFFGCKIDVSP 72 (83)
Q Consensus 35 d~~~g~afV~F~~p-EdA---~~A~~~~ng~~~~g~~i~V~~ 72 (83)
+..+|||||.-.+- +|. ..|+. ....+--|..+.-++
T Consensus 71 n~~KGfGFI~~ddGg~DVFVH~Sai~-~~~~L~eGq~V~Fev 111 (147)
T 3aqq_A 71 CRSKGHGFITPADGGPDIFLHISDVE-GEYVPVEGDEVTYKM 111 (147)
T ss_dssp ETTTTEEEEEESSSCSCEEEEGGGEE-SSBCCCTTCEEEEEE
T ss_pred eCCCCeEEeccCCCCccEEEEeeeec-CCCcCCCCCEEEEEE
Confidence 45799999987654 333 23332 122344555554444
Done!