RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy11609
(83 letters)
>d1weya_ d.58.7.1 (A:) Calcipressin-1 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 104
Score = 39.4 bits (91), Expect = 3e-06
Identities = 10/68 (14%), Positives = 23/68 (33%), Gaps = 2/68 (2%)
Query: 7 VVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGC 66
V S++ + ++ + K + + + F A A L H+ F G
Sbjct: 17 VFSESETRAKFESLFRTYDKDTTFQYFKSFK--RVRINFSNPLSAADARLRLHKTEFLGK 74
Query: 67 KIDVSPYH 74
++ +
Sbjct: 75 EMKLYFAQ 82
>d2f9da1 d.58.7.1 (A:12-125) Pre-mRNA branch site protein p14
{Human (Homo sapiens) [TaxId: 9606]}
Length = 114
Score = 38.8 bits (90), Expect = 5e-06
Identities = 12/72 (16%), Positives = 27/72 (37%), Gaps = 1/72 (1%)
Query: 3 LFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDR-YGLVCFKKADDAEKAILGSHEK 61
L+I + + +Y + K+G + +++ R V ++ DA+ A
Sbjct: 10 LYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNACDHLSGF 69
Query: 62 HFFGCKIDVSPY 73
+ + V Y
Sbjct: 70 NVCNRYLVVLYY 81
>d1wf2a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoproteins
C1/C2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 98
Score = 36.8 bits (85), Expect = 3e-05
Identities = 10/58 (17%), Positives = 23/58 (39%), Gaps = 4/58 (6%)
Query: 14 KDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVS 71
K + + K+GK+ + + V + +A A+ G + G +D++
Sbjct: 30 KSDVEAIFSKYGKIVGCSVH----KGFAFVQYVNERNARAAVAGEDGRMIAGQVLDIN 83
>d2adba1 d.58.7.1 (A:177-284) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 108
Score = 35.4 bits (81), Expect = 1e-04
Identities = 10/59 (16%), Positives = 20/59 (33%), Gaps = 2/59 (3%)
Query: 15 DGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAI--LGSHEKHFFGCKIDVS 71
D L+ + K G V + + L+ + A+ A L + C + +
Sbjct: 22 DVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRID 80
>d2dita1 d.58.7.1 (A:8-106) HIV Tat-specific factor 1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 99
Score = 35.3 bits (81), Expect = 1e-04
Identities = 12/64 (18%), Positives = 27/64 (42%)
Query: 13 LKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSP 72
+++ L E K G++ + + + D V F+ ++A+ I + F G +I
Sbjct: 32 IREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFGGRQITAQA 91
Query: 73 YHDV 76
+
Sbjct: 92 WDGT 95
>d2cpja1 d.58.7.1 (A:65-150) Non-POU domain-containing
octamer-binding protein, NonO {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 86
Score = 34.9 bits (80), Expect = 1e-04
Identities = 13/69 (18%), Positives = 27/69 (39%), Gaps = 2/69 (2%)
Query: 3 LFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKH 62
LF+ + ++ + ++K+GK V I +G + + AE A +
Sbjct: 11 LFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD--KGFGFIRLETRTLAEIAKVELDNMP 68
Query: 63 FFGCKIDVS 71
G ++ V
Sbjct: 69 LRGKQLRVR 77
>d1cvja2 d.58.7.1 (A:91-179) Poly(A)-binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 89
Score = 33.5 bits (76), Expect = 4e-04
Identities = 17/72 (23%), Positives = 29/72 (40%), Gaps = 2/72 (2%)
Query: 3 LFIYVVSDTSLKDGLYHEYKKHGKVSWVKII--GQGGDRYGLVCFKKADDAEKAILGSHE 60
+FI + + LY + G + K++ G YG V F+ + AE+AI +
Sbjct: 11 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNG 70
Query: 61 KHFFGCKIDVSP 72
K+ V
Sbjct: 71 MLLNDRKVFVGR 82
>d1p1ta_ d.58.7.1 (A:) Cleavage stimulation factor, 64 kda subunit
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 33.6 bits (76), Expect = 5e-04
Identities = 12/74 (16%), Positives = 23/74 (31%), Gaps = 4/74 (5%)
Query: 3 LFI----YVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGS 58
+F+ Y ++ LKD YG ++ + A A+
Sbjct: 11 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 70
Query: 59 HEKHFFGCKIDVSP 72
+ + F G + V
Sbjct: 71 NGREFSGRALRVDN 84
>d1u6fa1 d.58.7.1 (A:1-139) RNA-binding protein UBP1 {Trypanosoma
cruzi [TaxId: 5693]}
Length = 139
Score = 34.1 bits (77), Expect = 5e-04
Identities = 12/73 (16%), Positives = 24/73 (32%), Gaps = 4/73 (5%)
Query: 3 LFI----YVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGS 58
L + V + L+ + YG V F+ A++AI G
Sbjct: 45 LMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGL 104
Query: 59 HEKHFFGCKIDVS 71
+ + ++ V+
Sbjct: 105 NGFNILNKRLKVA 117
>d1x4ga1 d.58.7.1 (A:8-103) Nucleolysin TIAR {Human (Homo sapiens)
[TaxId: 9606]}
Length = 96
Score = 33.4 bits (76), Expect = 5e-04
Identities = 8/69 (11%), Positives = 24/69 (34%), Gaps = 2/69 (2%)
Query: 3 LFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKH 62
++ ++ + + G++ +++ + Y V F + A AI+ +
Sbjct: 21 VYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE--KGYSFVRFSTHESAAHAIVSVNGTT 78
Query: 63 FFGCKIDVS 71
G +
Sbjct: 79 IEGHVVKCY 87
>d1whwa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 99
Score = 33.5 bits (76), Expect = 6e-04
Identities = 14/74 (18%), Positives = 24/74 (32%), Gaps = 4/74 (5%)
Query: 3 LFI----YVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGS 58
LF+ Y S+ L+ + + + + V F + A KA
Sbjct: 11 LFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEV 70
Query: 59 HEKHFFGCKIDVSP 72
+ F G + V P
Sbjct: 71 DGQVFQGRMLHVLP 84
>d2cqba1 d.58.7.1 (A:1-89) Peptidyl-prolyl cis-trans isomerase E,
N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 89
Score = 32.7 bits (74), Expect = 8e-04
Identities = 15/73 (20%), Positives = 30/73 (41%), Gaps = 4/73 (5%)
Query: 3 LFIYVVSDTSLKDGLYHEYKKHGKV----SWVKIIGQGGDRYGLVCFKKADDAEKAILGS 58
L++ +++ L+ + G + + + + V F+ A+DA AI
Sbjct: 8 LYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM 67
Query: 59 HEKHFFGCKIDVS 71
+E FG I V+
Sbjct: 68 NESELFGRTIRVN 80
>d1no8a_ d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 78
Score = 32.2 bits (73), Expect = 0.001
Identities = 14/73 (19%), Positives = 29/73 (39%), Gaps = 5/73 (6%)
Query: 3 LFI----YVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGS 58
L + + VSD +++ L+ E+ K + V F++ DA KA+
Sbjct: 3 LLVSNLDFGVSDADIQE-LFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQY 61
Query: 59 HEKHFFGCKIDVS 71
+ G +++
Sbjct: 62 NGVPLDGRPMNIQ 74
>d1fxla1 d.58.7.1 (A:37-118) Hu antigen D (Hud) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 82
Score = 32.0 bits (72), Expect = 0.001
Identities = 14/73 (19%), Positives = 21/73 (28%), Gaps = 4/73 (5%)
Query: 3 LFI----YVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGS 58
L + ++ + + I YG V + DAEKAI
Sbjct: 5 LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 64
Query: 59 HEKHFFGCKIDVS 71
+ I VS
Sbjct: 65 NGLRLQTKTIKVS 77
>d2cpza1 d.58.7.1 (A:383-484) CUG triplet repeat RNA-binding
protein 1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 32.0 bits (72), Expect = 0.002
Identities = 11/73 (15%), Positives = 19/73 (26%), Gaps = 4/73 (5%)
Query: 3 LFI----YVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGS 58
LFI D L ++ +G V + A+ AI
Sbjct: 21 LFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSM 80
Query: 59 HEKHFFGCKIDVS 71
+ ++ V
Sbjct: 81 NGFQIGMKRLKVQ 93
>d1cvja1 d.58.7.1 (A:11-90) Poly(A)-binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 80
Score = 31.4 bits (71), Expect = 0.002
Identities = 12/74 (16%), Positives = 30/74 (40%), Gaps = 4/74 (5%)
Query: 3 LFIYVVSDTSLKDGLYHEYKKHGKVSWVKII----GQGGDRYGLVCFKKADDAEKAILGS 58
L++ + + LY ++ G + +++ + Y V F++ DAE+A+
Sbjct: 3 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 62
Query: 59 HEKHFFGCKIDVSP 72
+ G + +
Sbjct: 63 NFDVIKGKPVRIMW 76
>d2cpfa1 d.58.7.1 (A:362-446) Probable RNA-binding protein 19,
Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 85
Score = 31.5 bits (71), Expect = 0.003
Identities = 17/76 (22%), Positives = 33/76 (43%), Gaps = 7/76 (9%)
Query: 3 LFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGD-------RYGLVCFKKADDAEKAI 55
LFI ++ ++ ++ L + K G + I + +G V +KK + A+KA+
Sbjct: 1 LFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKAL 60
Query: 56 LGSHEKHFFGCKIDVS 71
G K++V
Sbjct: 61 KQLQGHTVDGHKLEVR 76
>d2cqga1 d.58.7.1 (A:96-185) TAR DNA-binding protein 43, TDP-43
{Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 31.1 bits (70), Expect = 0.004
Identities = 10/74 (13%), Positives = 21/74 (28%), Gaps = 6/74 (8%)
Query: 3 LFI----YVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGS 58
L + + ++ LK+ + + +G V F + + K +
Sbjct: 11 LIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQR 70
Query: 59 HEKHFFGCKIDVSP 72
H G D
Sbjct: 71 HM--IDGRWCDCKL 82
>d2u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 85
Score = 31.1 bits (70), Expect = 0.004
Identities = 11/73 (15%), Positives = 23/73 (31%), Gaps = 4/73 (5%)
Query: 3 LFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDR----YGLVCFKKADDAEKAILGS 58
LFI + + D + G + ++ Y + + ++AI G
Sbjct: 4 LFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGL 63
Query: 59 HEKHFFGCKIDVS 71
+ K+ V
Sbjct: 64 NGMQLGDKKLLVQ 76
>d2cpha1 d.58.7.1 (A:454-547) Probable RNA-binding protein 19,
Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 94
Score = 31.1 bits (70), Expect = 0.005
Identities = 12/75 (16%), Positives = 29/75 (38%), Gaps = 6/75 (8%)
Query: 3 LFIYVVSDTSLKDGLYHEYKKHGKVSWVKII-----GQGGDRYGLVCFKKADDAEKAILG 57
+ + + + + + + G++ V++ +G V F DA+KA
Sbjct: 11 ILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNA 70
Query: 58 -SHEKHFFGCKIDVS 71
H H +G ++ +
Sbjct: 71 LCHSTHLYGRRLVLE 85
>d1nu4a_ d.58.7.1 (A:) Splicesomal U1A protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 91
Score = 30.8 bits (69), Expect = 0.005
Identities = 11/65 (16%), Positives = 24/65 (36%), Gaps = 1/65 (1%)
Query: 8 VSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDR-YGLVCFKKADDAEKAILGSHEKHFFGC 66
+ LK L+ + + G++ + + R V FK+ A A+ F+
Sbjct: 15 IKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDK 74
Query: 67 KIDVS 71
+ +
Sbjct: 75 PMRIQ 79
>d1b7fa2 d.58.7.1 (A:205-289) Sex-lethal protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 85
Score = 30.7 bits (69), Expect = 0.005
Identities = 13/69 (18%), Positives = 26/69 (37%), Gaps = 4/69 (5%)
Query: 3 LFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGS 58
L++ + T D L + K+G + I+ V + K ++A++AI
Sbjct: 9 LYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISAL 68
Query: 59 HEKHFFGCK 67
+ G
Sbjct: 69 NNVIPEGGS 77
>d1wf0a_ d.58.7.1 (A:) TAR DNA-binding protein 43, TDP-43 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 30.8 bits (69), Expect = 0.006
Identities = 12/70 (17%), Positives = 23/70 (32%), Gaps = 3/70 (4%)
Query: 3 LFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKH 62
+F+ + +D L + ++G V V I + V F A+
Sbjct: 8 VFVGRCTGDMTEDELREFFSQYGDVMDVFIPKPF-RAFAFVTFADDQIAQSLCGEDLI-- 64
Query: 63 FFGCKIDVSP 72
G + +S
Sbjct: 65 IKGISVHISN 74
>d2cpea1 d.58.7.1 (A:353-453) RNA-binding protein EWS {Human (Homo
sapiens) [TaxId: 9606]}
Length = 101
Score = 30.9 bits (69), Expect = 0.006
Identities = 17/82 (20%), Positives = 30/82 (36%), Gaps = 12/82 (14%)
Query: 3 LFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIG------------QGGDRYGLVCFKKADD 50
+++ ++D+ D L +K+ G V K G V ++
Sbjct: 11 IYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPT 70
Query: 51 AEKAILGSHEKHFFGCKIDVSP 72
A+ A+ K F G K+ VS
Sbjct: 71 AKAAVEWFDGKDFQGSKLKVSL 92
>d1b7fa1 d.58.7.1 (A:123-204) Sex-lethal protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 82
Score = 30.4 bits (68), Expect = 0.006
Identities = 13/73 (17%), Positives = 27/73 (36%), Gaps = 4/73 (5%)
Query: 3 LFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGS 58
L + + LY ++ G ++ +I+ Y V F D+++AI
Sbjct: 5 LIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVL 64
Query: 59 HEKHFFGCKIDVS 71
+ ++ VS
Sbjct: 65 NGITVRNKRLKVS 77
>d2cq0a1 d.58.7.1 (A:231-320) Eukaryotic translation initiation
factor 3 subunit 4 {Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 30.4 bits (68), Expect = 0.008
Identities = 11/73 (15%), Positives = 22/73 (30%), Gaps = 6/73 (8%)
Query: 5 IYV------VSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGS 58
I V +T L++ + + F + +DA +AI G
Sbjct: 11 IRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGV 70
Query: 59 HEKHFFGCKIDVS 71
+ ++V
Sbjct: 71 SGFGYDHLILNVE 83
>d2cqca1 d.58.7.1 (A:109-191) Arginine/serine-rich splicing factor
10 {Human (Homo sapiens) [TaxId: 9606]}
Length = 83
Score = 29.7 bits (66), Expect = 0.011
Identities = 10/65 (15%), Positives = 22/65 (33%)
Query: 6 YVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFG 65
++ L++ + + V F+ DDA++A ++ G
Sbjct: 19 LYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDG 78
Query: 66 CKIDV 70
+I V
Sbjct: 79 RRIRV 83
>d1fjca_ d.58.7.1 (A:) Nucleolin {Golden hamster (Mesocricetus
auratus) [TaxId: 10036]}
Length = 96
Score = 29.6 bits (66), Expect = 0.014
Identities = 13/69 (18%), Positives = 24/69 (34%), Gaps = 1/69 (1%)
Query: 3 LFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKH 62
L +S +D L ++ ++ V G+ + FK DAEK +
Sbjct: 19 LLAKNLSFNITEDELKEVFEDALEIRLVSQDGKS-KGIAYIEFKSEADAEKNLEEKQGAE 77
Query: 63 FFGCKIDVS 71
G + +
Sbjct: 78 IDGRSVSLY 86
>d1rk8a_ d.58.7.1 (A:) RNA-binding protein 8 {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 88
Score = 29.7 bits (66), Expect = 0.014
Identities = 10/73 (13%), Positives = 20/73 (27%), Gaps = 4/73 (5%)
Query: 3 LFI----YVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGS 58
LF+ + +++ + + Y LV ++ A A
Sbjct: 10 LFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEAL 69
Query: 59 HEKHFFGCKIDVS 71
+ G I V
Sbjct: 70 NGAEIMGQTIQVD 82
>d1x5sa1 d.58.7.1 (A:8-97) Cold-inducible RNA-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 29.3 bits (65), Expect = 0.016
Identities = 17/73 (23%), Positives = 30/73 (41%), Gaps = 4/73 (5%)
Query: 3 LFI----YVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGS 58
LF+ + ++ SL+ + V Q +G V F+ DDA+ A++
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 59 HEKHFFGCKIDVS 71
+ K G +I V
Sbjct: 68 NGKSVDGRQIRVD 80
>d1x5ua1 d.58.7.1 (A:7-99) Splicing factor 3B subunit 4 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 93
Score = 28.8 bits (64), Expect = 0.027
Identities = 14/73 (19%), Positives = 24/73 (32%), Gaps = 4/73 (5%)
Query: 3 LFI----YVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGS 58
+++ VS+ L + + YG V F +DA+ AI
Sbjct: 12 VYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIM 71
Query: 59 HEKHFFGCKIDVS 71
+G I V+
Sbjct: 72 DMIKLYGKPIRVN 84
>d2cqia1 d.58.7.1 (A:1-90) Nucleolysin TIAR {Human (Homo sapiens)
[TaxId: 9606]}
Length = 90
Score = 28.9 bits (64), Expect = 0.027
Identities = 12/71 (16%), Positives = 28/71 (39%), Gaps = 2/71 (2%)
Query: 3 LFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRY--GLVCFKKADDAEKAILGSHE 60
L++ +S + + + + G K+I + V F + DA A+ +
Sbjct: 11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNG 70
Query: 61 KHFFGCKIDVS 71
+ G ++ V+
Sbjct: 71 RKILGKEVKVN 81
>d1o0pa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 28.8 bits (64), Expect = 0.032
Identities = 13/73 (17%), Positives = 24/73 (32%), Gaps = 6/73 (8%)
Query: 13 LKDGLYHEYKKHGKVSWVKII------GQGGDRYGLVCFKKADDAEKAILGSHEKHFFGC 66
+ + + E K+G V ++I G V F D +KA+ G + F
Sbjct: 27 IVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKFANR 86
Query: 67 KIDVSPYHDVDFE 79
+ +
Sbjct: 87 VVVTKYCDPDSYH 99
>d1x4ea1 d.58.7.1 (A:8-79) RNA-binding motif,
single-stranded-interacting protein 2, RBMS2 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 72
Score = 28.6 bits (63), Expect = 0.032
Identities = 10/61 (16%), Positives = 15/61 (24%)
Query: 8 VSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCK 67
+D L K + + YG V F A+KA+
Sbjct: 10 TTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQM 69
Query: 68 I 68
Sbjct: 70 A 70
>d2disa1 d.58.7.1 (A:8-103) Hypothetical protein FLJ20273 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 96
Score = 28.5 bits (63), Expect = 0.039
Identities = 14/77 (18%), Positives = 26/77 (33%), Gaps = 8/77 (10%)
Query: 3 LFIYVVSDTSLKDGLYHEYKKHGKV-SWVKIIGQGGDR-----YGLVCFKKADDAEKAI- 55
LFI + ++ + E K + V + D+ + V ++ A A
Sbjct: 4 LFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARR 63
Query: 56 -LGSHEKHFFGCKIDVS 71
L +G +I V
Sbjct: 64 KLMPGRIQLWGHQIAVD 80
>d2cq3a1 d.58.7.1 (A:110-202) RNA-binding protein 9 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 93
Score = 28.5 bits (63), Expect = 0.043
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 43 VCFKKADDAEKAILGSHEKHFFGCKIDVSP 72
V F+ + DA++A H G KI+V+
Sbjct: 56 VTFENSADADRAREKLHGTVVEGRKIEVNN 85
>d2cpda1 d.58.7.1 (A:223-308) APOBEC1 stimulating protein {Human
(Homo sapiens) [TaxId: 9606]}
Length = 86
Score = 28.1 bits (62), Expect = 0.049
Identities = 12/69 (17%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
Query: 3 LFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKH 62
L++ + ++ ++ + E+ + ++ + Y V F +DA +A+ + K
Sbjct: 11 LYVRNLMLSTSEEMIEKEFNNIKPGAVERV--KKIRDYAFVHFSNREDAVEAMKALNGKV 68
Query: 63 FFGCKIDVS 71
G I+V+
Sbjct: 69 LDGSPIEVT 77
>d1wg5a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H'
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 28.3 bits (62), Expect = 0.051
Identities = 10/67 (14%), Positives = 19/67 (28%), Gaps = 1/67 (1%)
Query: 6 YVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFG 65
+ S + ++ V F + AEKA L H++
Sbjct: 25 FGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKA-LKKHKERIGH 83
Query: 66 CKIDVSP 72
I++
Sbjct: 84 RYIEIFK 90
>d1x5ta1 d.58.7.1 (A:8-90) Splicing factor 3B subunit 4 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 83
Score = 27.8 bits (61), Expect = 0.058
Identities = 14/74 (18%), Positives = 25/74 (33%), Gaps = 5/74 (6%)
Query: 3 LFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIG-----QGGDRYGLVCFKKADDAEKAILG 57
+FI + + LY + G + I Y + F D ++ AI
Sbjct: 1 IFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEA 60
Query: 58 SHEKHFFGCKIDVS 71
+ ++ I VS
Sbjct: 61 MNGQYLCNRPITVS 74
>d2adca1 d.58.7.1 (A:335-443) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 109
Score = 28.2 bits (62), Expect = 0.065
Identities = 8/70 (11%), Positives = 18/70 (25%)
Query: 3 LFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKH 62
L + ++ + I LV + A+ A+ +
Sbjct: 5 LLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHK 64
Query: 63 FFGCKIDVSP 72
G I ++
Sbjct: 65 LHGKPIRITL 74
>d1h2vz_ d.58.7.1 (Z:) CBP20, 20KDa nuclear cap-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 93
Score = 27.6 bits (61), Expect = 0.081
Identities = 11/73 (15%), Positives = 27/73 (36%), Gaps = 4/73 (5%)
Query: 3 LFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIG----QGGDRYGLVCFKKADDAEKAILGS 58
L++ +S + ++ +Y + K G + + + + + V + DAE A+
Sbjct: 10 LYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYI 69
Query: 59 HEKHFFGCKIDVS 71
+ I
Sbjct: 70 NGTRLDDRIIRTD 82
>d1hd0a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein d0
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 27.3 bits (60), Expect = 0.082
Identities = 13/63 (20%), Positives = 22/63 (34%), Gaps = 1/63 (1%)
Query: 8 VSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCK 67
+ LKD + + I +G V FK+++ +K + E G
Sbjct: 11 TTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVM-DQKEHKLNGKV 69
Query: 68 IDV 70
ID
Sbjct: 70 IDP 72
>d1x4ha1 d.58.7.1 (A:8-105) RNA-binding protein 28 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 98
Score = 27.1 bits (59), Expect = 0.14
Identities = 9/80 (11%), Positives = 21/80 (26%), Gaps = 10/80 (12%)
Query: 3 LFI----YVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAI--- 55
+FI + + +L + L + + F + A+K +
Sbjct: 11 VFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAA 70
Query: 56 ---LGSHEKHFFGCKIDVSP 72
G ++ V
Sbjct: 71 SLEAEGGGLKLDGRQLKVDL 90
>d1wela1 d.58.7.1 (A:412-523) RNA-binding protein 12 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 112
Score = 27.2 bits (59), Expect = 0.18
Identities = 11/67 (16%), Positives = 20/67 (29%), Gaps = 1/67 (1%)
Query: 6 YVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFG 65
+ + + D + G V F+ D + A L H+++
Sbjct: 28 FEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAA-LCRHKQYMGN 86
Query: 66 CKIDVSP 72
I V P
Sbjct: 87 RFIQVHP 93
>d1x0fa1 d.58.7.1 (A:183-257) Nuclear ribonucleoprotein D0 (AUF1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 25.7 bits (56), Expect = 0.30
Identities = 8/72 (11%), Positives = 30/72 (41%), Gaps = 5/72 (6%)
Query: 3 LFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQ----GGDRYGLVCFKKADDAEKAILGS 58
+F+ +S + ++ + + G+V +++ + + FK+ + +K +
Sbjct: 2 IFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKK 61
Query: 59 HEKHFFGCKIDV 70
+ + K ++
Sbjct: 62 Y-HNVGLSKCEI 72
>d1jmta_ d.58.7.3 (A:) U2AF35
(35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 25.8 bits (56), Expect = 0.40
Identities = 17/75 (22%), Positives = 33/75 (44%), Gaps = 5/75 (6%)
Query: 3 LFIYVVSDTSLKDGLYHEYKKHGKVSWVKII---GQGGDRYGLVCFKKADDAEKAILGSH 59
+ + D ++ +K+G+V + + G V F++ +DAEKA++ +
Sbjct: 30 VEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLN 89
Query: 60 EKHFFGCKIDV--SP 72
+ F G I SP
Sbjct: 90 NRWFNGQPIHAELSP 104
>d1x5oa1 d.58.7.1 (A:8-108) RNA-binding motif,
single-stranded-interacting protein 1, RBMS1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 101
Score = 25.5 bits (55), Expect = 0.49
Identities = 8/74 (10%), Positives = 22/74 (29%), Gaps = 5/74 (6%)
Query: 3 LFI----YVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGS 58
L+I + + L++ + + + ++ G + + E I
Sbjct: 21 LYISNLPLSMDEQELEN-MLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHF 79
Query: 59 HEKHFFGCKIDVSP 72
+ K +P
Sbjct: 80 NGKFIKTPPGVSAP 93
>d2cpya1 d.58.7.1 (A:536-638) RNA-binding protein 12 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 103
Score = 25.6 bits (55), Expect = 0.51
Identities = 15/67 (22%), Positives = 22/67 (32%), Gaps = 1/67 (1%)
Query: 6 YVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFG 65
+ ++ + L V + G LV FK DDA K+ H K G
Sbjct: 18 FSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSE-RLHRKKLNG 76
Query: 66 CKIDVSP 72
+ V
Sbjct: 77 REAFVHV 83
>d2msta_ d.58.7.1 (A:) Neural RNA-binding protein Musashi-1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 75
Score = 25.1 bits (54), Expect = 0.67
Identities = 9/65 (13%), Positives = 16/65 (24%), Gaps = 1/65 (1%)
Query: 6 YVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFG 65
+ +K K + +G V F+ D EK H
Sbjct: 9 VNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVC-EIHFHEINN 67
Query: 66 CKIDV 70
++
Sbjct: 68 KMVEC 72
>d2cqda1 d.58.7.1 (A:1-103) RNA-binding region containing protein
1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 25.5 bits (55), Expect = 0.67
Identities = 15/73 (20%), Positives = 23/73 (31%), Gaps = 5/73 (6%)
Query: 3 LFI----YVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGS 58
+F+ Y +D SL+ V YG V AE+A
Sbjct: 13 IFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDP 72
Query: 59 HEKHFFGCKIDVS 71
+ G K +V+
Sbjct: 73 N-PIIDGRKANVN 84
>d1uawa_ d.58.7.1 (A:) Musashi-1 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 77
Score = 24.9 bits (54), Expect = 0.80
Identities = 13/73 (17%), Positives = 27/73 (36%), Gaps = 5/73 (6%)
Query: 3 LFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDR----YGLVCFKKADDAEKAILGS 58
+FI +S + ++GL + + G+V ++ + +G V F +K +
Sbjct: 3 MFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVL-AQ 61
Query: 59 HEKHFFGCKIDVS 71
ID
Sbjct: 62 SRHELDSKTIDPK 74
>d2j0wa3 d.58.18.10 (A:386-449) Aspartokinase {Escherichia coli
[TaxId: 562]}
Length = 64
Score = 23.5 bits (51), Expect = 1.7
Identities = 8/35 (22%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 30 VKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFF 64
+++I G + L +DAE+ + H + F
Sbjct: 30 IRMICYGASSHNLCFLVPGEDAEQVVQKLHS-NLF 63
>d1wexa_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein
L-like {Mouse (Mus musculus) [TaxId: 10090]}
Length = 104
Score = 24.0 bits (51), Expect = 2.0
Identities = 12/71 (16%), Positives = 31/71 (43%), Gaps = 6/71 (8%)
Query: 5 IYV--VSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAI--LGSHE 60
++V + ++ ++ L +K G + +V ++ R LV F+ D A++ +
Sbjct: 18 VHVRGLCESVVEADLVEALEKFGTICYVMMMPF--KRQALVEFENIDSAKECVTFAADVP 75
Query: 61 KHFFGCKIDVS 71
+ G + +
Sbjct: 76 VYIAGQQAFFN 86
>d1u1qa_ d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1, UP1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 183
Score = 24.2 bits (51), Expect = 2.2
Identities = 13/63 (20%), Positives = 28/63 (44%), Gaps = 5/63 (7%)
Query: 14 KDGLYHEYKKHGKVSWVKII---GQGGDR-YGLVCFKKADDAEKAILGSHEKHFFGCKID 69
+ L ++++GK+ ++I+ G G R + V F D +K ++ + G +
Sbjct: 111 EHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKY-HTVNGHNCE 169
Query: 70 VSP 72
V
Sbjct: 170 VRK 172
>d1whya_ d.58.7.1 (A:) Putative RNA-binding protein 15B, Rbm15b
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 97
Score = 23.5 bits (50), Expect = 2.9
Identities = 10/71 (14%), Positives = 26/71 (36%), Gaps = 4/71 (5%)
Query: 3 LFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKH 62
L++ + + L E+ + G + + + D + + ++ D A+ A
Sbjct: 20 LWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG--DSFAYIQYESLDAAQAACAKMRGFP 77
Query: 63 FFGC--KIDVS 71
G ++ V
Sbjct: 78 LGGPDRRLRVD 88
>d2cdqa3 d.58.18.10 (A:420-494) Aspartokinase {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 75
Score = 23.2 bits (50), Expect = 2.9
Identities = 9/35 (25%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 30 VKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFF 64
V++I QG + + +AE + H+ FF
Sbjct: 31 VQMISQGASKVNISFIVNEAEAEGCVQALHK-SFF 64
>d2ghpa3 d.58.7.1 (A:206-291) U4/U6 snRNA-associated-splicing
factor PRP24 {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 86
Score = 23.6 bits (50), Expect = 3.0
Identities = 8/32 (25%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 40 YGLVCFKKADDAEKAILGSHEKHFFGCKIDVS 71
+ F+ D AE+A+ + +I VS
Sbjct: 50 CAFMVFENKDSAERAL-QMNRSLLGNREISVS 80
>d1x4ba1 d.58.7.1 (A:8-110) Heterogeneous nuclear
ribonucleoproteins A2/B1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 103
Score = 23.5 bits (50), Expect = 3.0
Identities = 13/74 (17%), Positives = 32/74 (43%), Gaps = 5/74 (6%)
Query: 3 LFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDR----YGLVCFKKADDAEKAILGS 58
LFI +S + ++ L + Y++ GK++ ++ + +G V F + + A+ +
Sbjct: 23 LFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAM-AA 81
Query: 59 HEKHFFGCKIDVSP 72
G ++
Sbjct: 82 RPHSIDGRVVEPKR 95
>d1fxla2 d.58.7.1 (A:119-203) Hu antigen D (Hud) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 85
Score = 23.1 bits (49), Expect = 3.5
Identities = 16/75 (21%), Positives = 31/75 (41%), Gaps = 6/75 (8%)
Query: 3 LFIYVVSDTSLKDGLYHEYKKHGKV----SWVKIIGQGGDRYGLVCFKKADDAEKAILGS 58
L++ + T + L + ++G++ V + G + F K +AE+AI G
Sbjct: 9 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 68
Query: 59 HEKHFFGC--KIDVS 71
+ + G I V
Sbjct: 69 NGQKPSGATEPITVK 83
>d1l3ka1 d.58.7.1 (A:8-91) Nuclear ribonucleoprotein A1 (RNP A1,
UP1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 84
Score = 23.1 bits (49), Expect = 3.9
Identities = 11/73 (15%), Positives = 28/73 (38%), Gaps = 7/73 (9%)
Query: 3 LFI----YVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDR-YGLVCFKKADDAEKAILG 57
LFI + +D SL+ + ++ ++ R +G V + ++ + A+
Sbjct: 9 LFIGGLSFETTDESLRS-HFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAM-N 66
Query: 58 SHEKHFFGCKIDV 70
+ G ++
Sbjct: 67 ARPHKVDGRVVEP 79
>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 159
Score = 23.4 bits (50), Expect = 4.1
Identities = 14/65 (21%), Positives = 26/65 (40%), Gaps = 4/65 (6%)
Query: 11 TSLKDGLYHEYKKHGKVSWVKI--IGQG--GDRYGLVCFKKADDAEKAILGSHEKHFFGC 66
+++K+ L K+S KI +G G G + K E A++ + G
Sbjct: 1 STVKEQLIQNLVPEDKLSRCKITVVGVGDVGMACAISILLKGLADELALVDADTDKLRGE 60
Query: 67 KIDVS 71
+D+
Sbjct: 61 ALDLQ 65
>d1zh5a2 d.58.7.1 (A:105-189) Lupus LA protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 85
Score = 22.4 bits (47), Expect = 6.1
Identities = 6/68 (8%), Positives = 23/68 (33%), Gaps = 2/68 (2%)
Query: 8 VSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCK 67
+ +K+ + + + + + + V F + A+K + + + +
Sbjct: 18 ATLDDIKE-WLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFV-ETPGQKYKETD 75
Query: 68 IDVSPYHD 75
+ + D
Sbjct: 76 LLILFKDD 83
>d2cq2a1 d.58.7.1 (A:25-125) Alkylation repair AlkB homolog 8,
ALKBH8 {Human (Homo sapiens) [TaxId: 9606]}
Length = 101
Score = 22.0 bits (46), Expect = 9.4
Identities = 7/67 (10%), Positives = 21/67 (31%), Gaps = 7/67 (10%)
Query: 8 VSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFF-GC 66
VS L + + + Y ++ +++++A + + K
Sbjct: 32 VSRNQLLP-VLEKCGLVDALLMPPN-----KPYSFARYRTTEESKRAYVTLNGKEVVDDL 85
Query: 67 KIDVSPY 73
++ Y
Sbjct: 86 GQKITLY 92
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.324 0.143 0.451
Gapped
Lambda K H
0.267 0.0553 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 343,273
Number of extensions: 14066
Number of successful extensions: 82
Number of sequences better than 10.0: 1
Number of HSP's gapped: 82
Number of HSP's successfully gapped: 67
Length of query: 83
Length of database: 2,407,596
Length adjustment: 49
Effective length of query: 34
Effective length of database: 1,734,826
Effective search space: 58984084
Effective search space used: 58984084
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.3 bits)