Query psy11611
Match_columns 60
No_of_seqs 39 out of 41
Neff 3.1
Searched_HMMs 29240
Date Fri Aug 16 23:04:13 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11611.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11611hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2k60_A Protein (stromal intera 99.9 1.1E-22 3.8E-27 137.0 2.1 50 2-53 39-88 (150)
2 2l5y_A Stromal interaction mol 99.8 9.5E-22 3.3E-26 132.3 1.4 50 2-53 39-88 (150)
3 1h8b_A ACT-EF34, alpha-actinin 41.8 13 0.00044 21.0 1.6 18 18-36 16-33 (75)
4 1uqv_A STE50 protein; SAM, ste 35.8 3.6 0.00012 25.4 -1.5 14 40-53 6-19 (85)
5 1pk1_B Sex COMB on midleg CG94 34.9 4.2 0.00014 24.1 -1.3 15 38-52 9-23 (89)
6 1q7l_B Aminoacylase-1; catalys 33.4 26 0.00088 19.2 2.0 17 20-37 51-67 (88)
7 2quo_A Heat-labIle enterotoxin 32.2 11 0.00039 24.4 0.4 24 37-60 32-55 (126)
8 3bs7_A Protein aveugle; sterIl 29.4 7.9 0.00027 21.4 -0.7 11 42-52 2-12 (78)
9 1kw4_A Polyhomeotic; SAM domai 25.4 9.8 0.00033 22.3 -0.8 13 40-52 11-23 (89)
10 2gle_A Neurabin-1; SAM domain, 25.0 20 0.00069 19.5 0.5 12 41-52 2-13 (74)
11 3bs5_A Protein aveugle; sterIl 22.8 12 0.0004 22.5 -0.8 15 38-52 18-32 (106)
12 2khv_A Phage integrase; soluti 22.7 51 0.0018 17.7 1.9 18 29-46 1-18 (106)
13 3bq7_A Diacylglycerol kinase d 20.2 15 0.00053 20.6 -0.6 15 38-52 2-16 (81)
No 1
>2k60_A Protein (stromal interaction molecule 1); EF-hand, SAM domain, EF-SAM, STIM1, store operated calcium entry regulator, SOCE; NMR {Homo sapiens}
Probab=99.85 E-value=1.1e-22 Score=137.03 Aligned_cols=50 Identities=34% Similarity=0.670 Sum_probs=47.4
Q ss_pred chhhhhccCCchHHHHHhhhhcCCCcceeHHHHHHHHhhccceecCccceee
Q psy11611 2 SFLREELKYDDGAEKRQKAFHKNDDMHVSVKELWDVWIKSECCREDAGGQQH 53 (60)
Q Consensus 2 eFLREdl~y~d~~~~r~~~fH~~D~~~ISVedLW~~Wk~Sev~NWT~~~~~~ 53 (60)
+||||||+|+++. .||++||++|+ +|||+|||++|+.|+|||||+++|++
T Consensus 39 ~flredl~~~d~~-~~~~~fh~~D~-~Isv~eLw~~W~~s~V~nWTvedV~~ 88 (150)
T 2k60_A 39 EFLREDLNYHDPT-VKHSTFHGEDK-LISVEDLWKAWKSSEVYNWTVDEVVQ 88 (150)
T ss_dssp THHHHHTTSSCTH-HHHHHHTSSSC-CEEHHHHHHHHHHSHHHHCCHHHHHH
T ss_pred HHHHHHhccccch-hhhhcccCCCC-eeeHHHHHHHhccCccccCCHHHHHH
Confidence 7999999999999 69999999888 99999999999999999999999874
No 2
>2l5y_A Stromal interaction molecule 2; EF-hand, SAM domain, store OPE calcium entry, signaling protein; NMR {Homo sapiens}
Probab=99.82 E-value=9.5e-22 Score=132.31 Aligned_cols=50 Identities=28% Similarity=0.711 Sum_probs=47.4
Q ss_pred chhhhhccCCchHHHHHhhhhcCCCcceeHHHHHHHHhhccceecCccceee
Q psy11611 2 SFLREELKYDDGAEKRQKAFHKNDDMHVSVKELWDVWIKSECCREDAGGQQH 53 (60)
Q Consensus 2 eFLREdl~y~d~~~~r~~~fH~~D~~~ISVedLW~~Wk~Sev~NWT~~~~~~ 53 (60)
+||||+|+|++++ .||+.||++|+ +|||+|||++|+.|+|+|||+++|++
T Consensus 39 ~Flre~~~~~d~~-~k~~~~h~~D~-~Isv~eLw~~W~~s~V~nWTvedV~~ 88 (150)
T 2l5y_A 39 EFIREDMKYKDAT-NKHSHLHREDK-HITIEDLWKRWKTSEVHNWTLEDTLQ 88 (150)
T ss_dssp HHHHHHTTTTCSH-HHHHHHTTTCC-CBCHHHHHHHHHTSHHHHCCHHHHHH
T ss_pred HHHHHHhcccCch-hHHhhhcCCCC-eeeHHHHHHHHccCcchhCCHHHHHH
Confidence 6999999999999 69999999997 99999999999999999999999864
No 3
>1h8b_A ACT-EF34, alpha-actinin 2, skeletal muscle isoform; structural protein, Z-DISK structural complex; NMR {Homo sapiens} SCOP: a.39.1.7
Probab=41.80 E-value=13 Score=20.95 Aligned_cols=18 Identities=17% Similarity=0.195 Sum_probs=15.4
Q ss_pred HhhhhcCCCcceeHHHHHH
Q psy11611 18 QKAFHKNDDMHVSVKELWD 36 (60)
Q Consensus 18 ~~~fH~~D~~~ISVedLW~ 36 (60)
=+.| .+.+.+||.++|-.
T Consensus 16 Fr~f-~dg~G~It~~eLr~ 33 (75)
T 1h8b_A 16 FRIL-ASDKPYILAEELRR 33 (75)
T ss_dssp HHHH-TTSCSSBCHHHHHH
T ss_pred HHHH-hcCCCCcCHHHHHh
Confidence 3578 88888999999987
No 4
>1uqv_A STE50 protein; SAM, sterIle alpha motif, helical, protein-protein interaction domain, growth arrest, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.60.1.2 PDB: 1z1v_A
Probab=35.76 E-value=3.6 Score=25.37 Aligned_cols=14 Identities=0% Similarity=-0.061 Sum_probs=11.2
Q ss_pred hccceecCccceee
Q psy11611 40 KSECCREDAGGQQH 53 (60)
Q Consensus 40 ~Sev~NWT~~~~~~ 53 (60)
.++|.+||+++|++
T Consensus 6 ~~~v~~Wt~~~V~~ 19 (85)
T 1uqv_A 6 NEDFSQWSVDDVIT 19 (85)
T ss_dssp CCCTTTCCHHHHHH
T ss_pred ccccccCCHHHHHH
Confidence 46889999998864
No 5
>1pk1_B Sex COMB on midleg CG9495-PA; hetero SAM domain, polymers, transcriptional repression, transcription repression; 1.80A {Drosophila melanogaster} SCOP: a.60.1.2 PDB: 1pk3_A
Probab=34.89 E-value=4.2 Score=24.12 Aligned_cols=15 Identities=7% Similarity=-0.130 Sum_probs=10.7
Q ss_pred HhhccceecCcccee
Q psy11611 38 WIKSECCREDAGGQQ 52 (60)
Q Consensus 38 Wk~Sev~NWT~~~~~ 52 (60)
...+++.+||+++|.
T Consensus 9 ~~~~~v~~WsvedV~ 23 (89)
T 1pk1_B 9 HLRSQPIDWTIEEVI 23 (89)
T ss_dssp --CCCGGGCCHHHHH
T ss_pred CCCCCchhCCHHHHH
Confidence 346788899998874
No 6
>1q7l_B Aminoacylase-1; catalysis, enzyme dimerization, site- directed mutagenesis, structure comparison, zinc, hydrolase; 1.40A {Homo sapiens} SCOP: c.56.5.4
Probab=33.36 E-value=26 Score=19.24 Aligned_cols=17 Identities=12% Similarity=0.229 Sum_probs=14.3
Q ss_pred hhhcCCCcceeHHHHHHH
Q psy11611 20 AFHKNDDMHVSVKELWDV 37 (60)
Q Consensus 20 ~fH~~D~~~ISVedLW~~ 37 (60)
..|..|. +|+|++|-++
T Consensus 51 ~~H~~dE-~v~i~~l~~~ 67 (88)
T 1q7l_B 51 LLHDHDE-RLHEAVFLRG 67 (88)
T ss_dssp CTTSTTC-EEEHHHHHHH
T ss_pred cccCCCC-eeEHHHHHHH
Confidence 5798888 9999999754
No 7
>2quo_A Heat-labIle enterotoxin B chain; beta sandwich, claudin-4 binding domain, therapeutic agent; 1.75A {Clostridium perfringens}
Probab=32.21 E-value=11 Score=24.40 Aligned_cols=24 Identities=25% Similarity=0.205 Sum_probs=20.2
Q ss_pred HHhhccceecCccceeecccccCC
Q psy11611 37 VWIKSECCREDAGGQQHGGITSQG 60 (60)
Q Consensus 37 ~Wk~Sev~NWT~~~~~~~~~~~~~ 60 (60)
.|..|+.|.||.+-..|-.||..|
T Consensus 32 dwrssnsypwtqklnlhltitatg 55 (126)
T 2quo_A 32 DWRSSNSYPWTQKLNLHLTITATG 55 (126)
T ss_dssp EEECSSCBCTTCCEEEEEEECSSS
T ss_pred eccccCCCcchheeeeEEEEEecC
Confidence 499999999999988888877654
No 8
>3bs7_A Protein aveugle; sterIle alpha motif (SAM) domain, cytoplasm, membrane, sensory transduction, vision, signaling protein; 1.90A {Drosophila melanogaster}
Probab=29.40 E-value=7.9 Score=21.40 Aligned_cols=11 Identities=0% Similarity=-0.284 Sum_probs=7.2
Q ss_pred cceecCcccee
Q psy11611 42 ECCREDAGGQQ 52 (60)
Q Consensus 42 ev~NWT~~~~~ 52 (60)
+|.+||+++|.
T Consensus 2 ~v~~Wt~~~V~ 12 (78)
T 3bs7_A 2 AVYLWTVSDVL 12 (78)
T ss_dssp CGGGCCHHHHH
T ss_pred ChhhCCHHHHH
Confidence 46677777663
No 9
>1kw4_A Polyhomeotic; SAM domain, polycomb group, polymer, DNA binding protein; 1.75A {Drosophila melanogaster} SCOP: a.60.1.2 PDB: 1pk1_A
Probab=25.37 E-value=9.8 Score=22.31 Aligned_cols=13 Identities=0% Similarity=-0.084 Sum_probs=10.2
Q ss_pred hccceecCcccee
Q psy11611 40 KSECCREDAGGQQ 52 (60)
Q Consensus 40 ~Sev~NWT~~~~~ 52 (60)
.++|.+||+++|.
T Consensus 11 ~~~v~~Ws~edV~ 23 (89)
T 1kw4_A 11 RPPISSWSVDDVS 23 (89)
T ss_dssp CCCGGGCCHHHHH
T ss_pred CCCchhCCHHHHH
Confidence 4678889988875
No 10
>2gle_A Neurabin-1; SAM domain, scaffold, protein protein interaction, protein binding; NMR {Rattus norvegicus}
Probab=24.96 E-value=20 Score=19.46 Aligned_cols=12 Identities=0% Similarity=-0.277 Sum_probs=8.7
Q ss_pred ccceecCcccee
Q psy11611 41 SECCREDAGGQQ 52 (60)
Q Consensus 41 Sev~NWT~~~~~ 52 (60)
.+|.+||+++|.
T Consensus 2 ~~v~~Ws~~~V~ 13 (74)
T 2gle_A 2 HMVHEWSVQQVS 13 (74)
T ss_dssp CCGGGCCSGGGH
T ss_pred CCcccCCHHHHH
Confidence 357788888774
No 11
>3bs5_A Protein aveugle; sterIle alpha motif, SAM domain, SAM domain dimer, SAM domain complex, cytoplasm, membrane; 2.00A {Drosophila melanogaster}
Probab=22.82 E-value=12 Score=22.55 Aligned_cols=15 Identities=0% Similarity=-0.349 Sum_probs=9.6
Q ss_pred HhhccceecCcccee
Q psy11611 38 WIKSECCREDAGGQQ 52 (60)
Q Consensus 38 Wk~Sev~NWT~~~~~ 52 (60)
+...+|.+||+++|.
T Consensus 18 ~~~~~v~~Wt~~~V~ 32 (106)
T 3bs5_A 18 TRPKAVYLWTVSDVL 32 (106)
T ss_dssp --CCCGGGCCHHHHH
T ss_pred CCCCCcccCCHHHHH
Confidence 445678888888764
No 12
>2khv_A Phage integrase; solution structure, GFT, NESG, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Nitrosospira multiformis atcc 25196}
Probab=22.73 E-value=51 Score=17.73 Aligned_cols=18 Identities=17% Similarity=0.178 Sum_probs=13.1
Q ss_pred eeHHHHHHHHhhccceec
Q psy11611 29 VSVKELWDVWIKSECCRE 46 (60)
Q Consensus 29 ISVedLW~~Wk~Sev~NW 46 (60)
+|++++++.|...-..+|
T Consensus 1 ~Tf~~~~~~wl~~~~~~~ 18 (106)
T 2khv_A 1 MTFSECAALYIKAHRSSW 18 (106)
T ss_dssp CBHHHHHHHHHHTTGGGG
T ss_pred CCHHHHHHHHHHHHhhcc
Confidence 589999999987543333
No 13
>3bq7_A Diacylglycerol kinase delta; SAM domain, polymerization domain, alternative splicing, cytoplasm, membrane, metal-binding, phorbol-ester binding; 2.90A {Homo sapiens}
Probab=20.23 E-value=15 Score=20.61 Aligned_cols=15 Identities=0% Similarity=-0.382 Sum_probs=9.1
Q ss_pred HhhccceecCcccee
Q psy11611 38 WIKSECCREDAGGQQ 52 (60)
Q Consensus 38 Wk~Sev~NWT~~~~~ 52 (60)
++..+|.+||++++.
T Consensus 2 ~~~~~v~~Ws~~~V~ 16 (81)
T 3bq7_A 2 EKTRPVHLWGTEEVA 16 (81)
T ss_dssp ---CCGGGCCHHHHH
T ss_pred CCCCChhhCCHHHHH
Confidence 345678888887764
Done!