RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy11611
         (60 letters)



>gnl|CDD|182912 PRK11028, PRK11028, 6-phosphogluconolactonase; Provisional.
          Length = 330

 Score = 25.3 bits (56), Expect = 1.7
 Identities = 13/37 (35%), Positives = 15/37 (40%), Gaps = 3/37 (8%)

Query: 5   REELKYDDGAEKRQKAFHKNDDMHVSVKEL---WDVW 38
             E+   +GA  R   FH N      V EL    DVW
Sbjct: 166 PAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVW 202


>gnl|CDD|235105 PRK03124, PRK03124, S-adenosylmethionine decarboxylase proenzyme;
          Provisional.
          Length = 127

 Score = 24.1 bits (53), Expect = 5.0
 Identities = 8/11 (72%), Positives = 9/11 (81%)

Query: 13 GAEKRQKAFHK 23
          GAE R+ AFHK
Sbjct: 38 GAEVREVAFHK 48


>gnl|CDD|227404 COG5072, ALK1, Serine/threonine kinase of the haspin family [Cell
           division and chromosome partitioning].
          Length = 488

 Score = 23.7 bits (51), Expect = 6.8
 Identities = 10/51 (19%), Positives = 18/51 (35%), Gaps = 1/51 (1%)

Query: 1   MSFLREELKYDDGAEKRQKAFHKN-DDMHVSVKELWDVWIKSECCREDAGG 50
           +SF    +   D  EK+    H+N    ++ + E     I  +  R     
Sbjct: 324 LSFFWSCISILDILEKKFPFEHRNLTLDNILIDEGNVTLIDFKLSRLSYSQ 374


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.316    0.133    0.421 

Gapped
Lambda     K      H
   0.267   0.0751    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 2,979,725
Number of extensions: 188418
Number of successful extensions: 109
Number of sequences better than 10.0: 1
Number of HSP's gapped: 109
Number of HSP's successfully gapped: 3
Length of query: 60
Length of database: 10,937,602
Length adjustment: 31
Effective length of query: 29
Effective length of database: 9,562,628
Effective search space: 277316212
Effective search space used: 277316212
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.1 bits)