RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy11611
         (60 letters)



>2k60_A Protein (stromal interaction molecule 1); EF-hand, SAM domain,
          EF-SAM, STIM1, store operated calcium entry regulator,
          SOCE; NMR {Homo sapiens}
          Length = 150

 Score = 38.9 bits (90), Expect = 1e-05
 Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 2/41 (4%)

Query: 2  SFLREELKYDDGAEKRQKAFHKNDDMHVSVKELWDVWIKSE 42
           FLRE+L Y D    +   FH  +D  +SV++LW  W  SE
Sbjct: 39 EFLREDLNYHDPTV-KHSTFH-GEDKLISVEDLWKAWKSSE 77


>2l5y_A Stromal interaction molecule 2; EF-hand, SAM domain, store OPE
          calcium entry, signaling protein; NMR {Homo sapiens}
          Length = 150

 Score = 38.5 bits (89), Expect = 2e-05
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 2/41 (4%)

Query: 2  SFLREELKYDDGAEKRQKAFHKNDDMHVSVKELWDVWIKSE 42
           F+RE++KY D   K        +D H+++++LW  W  SE
Sbjct: 39 EFIREDMKYKDATNKHSH--LHREDKHITIEDLWKRWKTSE 77


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.316    0.133    0.421 

Gapped
Lambda     K      H
   0.267   0.0552    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 949,861
Number of extensions: 37438
Number of successful extensions: 54
Number of sequences better than 10.0: 1
Number of HSP's gapped: 52
Number of HSP's successfully gapped: 2
Length of query: 60
Length of database: 6,701,793
Length adjustment: 31
Effective length of query: 29
Effective length of database: 5,836,242
Effective search space: 169251018
Effective search space used: 169251018
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.8 bits)