RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy11611
         (60 letters)



>d2c60a1 d.15.2.2 (A:43-122) Mitogen-activated protein kinase
          kinase kinase 3,  MEKK 3 {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 80

 Score = 23.6 bits (51), Expect = 1.3
 Identities = 9/27 (33%), Positives = 13/27 (48%)

Query: 8  LKYDDGAEKRQKAFHKNDDMHVSVKEL 34
          +KY+D   K    F +  D+H    EL
Sbjct: 22 VKYEDVEHKVTTVFGQPLDLHYMNNEL 48


>d2nptb1 d.15.2.2 (B:42-123) Mitogen-activated protein kinase
          kinase kinase 2,  MEKK 2 {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 82

 Score = 23.5 bits (51), Expect = 1.4
 Identities = 9/27 (33%), Positives = 16/27 (59%)

Query: 8  LKYDDGAEKRQKAFHKNDDMHVSVKEL 34
          +K +D   K + AF ++ D+H +  EL
Sbjct: 22 VKLEDLRSKAKIAFGQSMDLHYTNNEL 48


>d3er7a1 d.17.4.24 (A:5-122) Uncharacterized protein Exig0174
          {Exiguobacterium sibiricum 255-15 [TaxId: 262543]}
          Length = 118

 Score = 22.2 bits (47), Expect = 5.5
 Identities = 7/22 (31%), Positives = 11/22 (50%), Gaps = 4/22 (18%)

Query: 21 FHKNDDMHVSVKELWDVWIKSE 42
          F  N D    +K ++  W+ SE
Sbjct: 54 FTANQD----IKHMYAGWVPSE 71


>d2vk9a1 c.68.1.22 (A:2-541) Alpha-toxin {Clostridium novyi [TaxId:
           1542]}
          Length = 540

 Score = 22.2 bits (47), Expect = 6.2
 Identities = 9/24 (37%), Positives = 12/24 (50%)

Query: 1   MSFLREELKYDDGAEKRQKAFHKN 24
           ++FL    KYD G    QK  + N
Sbjct: 205 INFLSNYFKYDIGKLNNQKENNNN 228


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.133    0.421 

Gapped
Lambda     K      H
   0.267   0.0588    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 240,395
Number of extensions: 7756
Number of successful extensions: 21
Number of sequences better than 10.0: 1
Number of HSP's gapped: 21
Number of HSP's successfully gapped: 5
Length of query: 60
Length of database: 2,407,596
Length adjustment: 30
Effective length of query: 30
Effective length of database: 1,995,696
Effective search space: 59870880
Effective search space used: 59870880
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.2 bits)