Query psy11615
Match_columns 224
No_of_seqs 64 out of 66
Neff 3.6
Searched_HMMs 46136
Date Fri Aug 16 23:08:57 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11615.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11615hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4403|consensus 100.0 5.4E-67 1.2E-71 492.8 19.0 177 37-222 195-377 (575)
2 KOG4403|consensus 99.6 4E-16 8.7E-21 148.9 -0.0 55 6-60 358-429 (575)
3 PRK10920 putative uroporphyrin 95.5 0.25 5.3E-06 47.4 12.0 77 52-128 38-124 (390)
4 PF04880 NUDE_C: NUDE protein, 95.2 0.027 5.7E-07 48.5 4.4 58 97-169 1-58 (166)
5 PRK11637 AmiB activator; Provi 95.1 1.4 3E-05 41.5 15.9 73 45-128 14-86 (428)
6 PRK06975 bifunctional uroporph 94.1 0.82 1.8E-05 46.0 12.3 78 51-128 324-410 (656)
7 PF10828 DUF2570: Protein of u 94.0 2.4 5.2E-05 33.4 15.0 105 50-190 3-109 (110)
8 TIGR03495 phage_LysB phage lys 93.8 2.2 4.7E-05 35.7 12.4 34 55-88 2-35 (135)
9 PF10805 DUF2730: Protein of u 93.5 2.3 5E-05 33.5 11.4 69 66-173 22-90 (106)
10 PRK09039 hypothetical protein; 93.2 3 6.6E-05 38.9 13.6 25 149-173 138-162 (343)
11 CHL00019 atpF ATP synthase CF0 92.9 4.8 0.0001 33.9 13.3 116 58-173 33-158 (184)
12 PRK13461 F0F1 ATP synthase sub 92.8 4.6 0.0001 33.1 14.5 123 49-173 4-139 (159)
13 PF00769 ERM: Ezrin/radixin/mo 92.8 0.58 1.3E-05 41.8 8.0 52 117-171 75-126 (246)
14 PF04375 HemX: HemX; InterPro 92.5 3.8 8.2E-05 38.5 13.3 32 62-93 43-74 (372)
15 PRK10780 periplasmic chaperone 92.4 4.5 9.8E-05 33.6 12.4 49 51-99 1-49 (165)
16 TIGR01144 ATP_synt_b ATP synth 92.0 5.4 0.00012 32.0 13.3 82 57-140 4-93 (147)
17 PF12072 DUF3552: Domain of un 91.6 7.5 0.00016 33.5 13.1 17 55-71 5-21 (201)
18 PRK08475 F0F1 ATP synthase sub 91.2 6 0.00013 33.2 11.9 64 78-141 55-121 (167)
19 PRK06231 F0F1 ATP synthase sub 90.8 5 0.00011 34.9 11.4 41 78-118 81-122 (205)
20 PF14197 Cep57_CLD_2: Centroso 90.3 1.3 2.8E-05 33.0 6.4 55 152-222 2-56 (69)
21 PRK14472 F0F1 ATP synthase sub 90.2 9.9 0.00021 31.7 14.5 64 78-141 51-117 (175)
22 PRK14474 F0F1 ATP synthase sub 89.6 14 0.0003 33.1 13.5 96 78-173 38-139 (250)
23 PF10883 DUF2681: Protein of u 89.2 3.2 6.8E-05 32.6 8.0 24 105-128 32-55 (87)
24 PRK11637 AmiB activator; Provi 88.4 7.7 0.00017 36.6 11.5 35 94-128 45-79 (428)
25 PF14584 DUF4446: Protein of u 88.1 4.2 9.2E-05 34.3 8.7 74 54-128 5-78 (151)
26 PRK07352 F0F1 ATP synthase sub 88.1 14 0.00031 30.8 14.3 95 79-173 53-153 (174)
27 PRK10884 SH3 domain-containing 87.9 3.8 8.2E-05 36.1 8.6 72 89-173 93-164 (206)
28 PRK13729 conjugal transfer pil 87.5 4.5 9.8E-05 40.2 9.7 40 89-128 69-108 (475)
29 PF08317 Spc7: Spc7 kinetochor 87.5 5.6 0.00012 36.5 9.8 22 151-172 247-268 (325)
30 TIGR03321 alt_F1F0_F0_B altern 86.9 21 0.00046 31.5 14.4 96 78-173 38-139 (246)
31 PRK13455 F0F1 ATP synthase sub 86.8 18 0.00038 30.5 13.7 41 78-118 60-101 (184)
32 PF06210 DUF1003: Protein of u 86.7 7.8 0.00017 31.1 9.1 65 54-118 38-102 (108)
33 TIGR02680 conserved hypothetic 86.3 44 0.00095 36.8 17.1 145 49-201 237-382 (1353)
34 PF06120 Phage_HK97_TLTM: Tail 86.2 25 0.00055 33.0 13.4 70 59-128 27-113 (301)
35 PF04156 IncA: IncA protein; 86.2 18 0.00039 30.0 12.9 7 64-70 54-60 (191)
36 PRK09173 F0F1 ATP synthase sub 86.1 16 0.00035 29.9 10.9 41 78-118 35-76 (159)
37 PRK14475 F0F1 ATP synthase sub 86.0 19 0.00041 30.0 14.4 97 44-141 6-109 (167)
38 PF06295 DUF1043: Protein of u 85.6 3.1 6.7E-05 33.8 6.3 48 56-107 3-50 (128)
39 PRK13453 F0F1 ATP synthase sub 85.0 22 0.00047 29.8 14.5 63 78-140 51-116 (173)
40 PF15619 Lebercilin: Ciliary p 84.1 28 0.00061 30.4 13.3 65 150-222 120-187 (194)
41 PRK07353 F0F1 ATP synthase sub 83.5 20 0.00044 28.4 11.7 38 78-115 38-76 (140)
42 PRK12704 phosphodiesterase; Pr 83.3 32 0.00069 34.2 13.4 16 207-222 178-193 (520)
43 PRK13460 F0F1 ATP synthase sub 83.0 26 0.00057 29.2 14.2 64 78-141 49-115 (173)
44 PF04156 IncA: IncA protein; 82.8 26 0.00057 29.1 11.5 27 91-117 83-109 (191)
45 PF05701 WEMBL: Weak chloropla 81.8 56 0.0012 32.2 16.3 156 59-220 249-407 (522)
46 PF05266 DUF724: Protein of un 81.7 19 0.00041 31.4 10.0 42 132-173 143-184 (190)
47 PRK14471 F0F1 ATP synthase sub 81.6 28 0.00061 28.6 13.7 63 79-141 42-107 (164)
48 PF00430 ATP-synt_B: ATP synth 81.6 22 0.00047 27.4 11.3 40 79-118 33-73 (132)
49 KOG0161|consensus 81.5 24 0.00052 40.6 12.9 59 151-221 1522-1580(1930)
50 PF05010 TACC: Transforming ac 81.3 36 0.00077 30.3 11.7 105 50-163 45-158 (207)
51 PRK11677 hypothetical protein; 81.3 17 0.00038 30.3 9.2 50 54-107 5-54 (134)
52 PRK00409 recombination and DNA 80.4 13 0.00027 38.6 9.8 61 77-137 514-576 (782)
53 COG1422 Predicted membrane pro 80.2 5.3 0.00012 35.7 6.2 57 54-119 46-102 (201)
54 PF04111 APG6: Autophagy prote 79.9 25 0.00055 32.6 10.7 33 188-220 102-134 (314)
55 PRK05759 F0F1 ATP synthase sub 79.8 30 0.00065 27.8 11.7 37 79-115 38-75 (156)
56 PF04999 FtsL: Cell division p 79.6 16 0.00034 27.6 7.8 15 104-118 50-64 (97)
57 PF08317 Spc7: Spc7 kinetochor 79.0 53 0.0012 30.2 16.2 105 94-220 161-272 (325)
58 PRK04863 mukB cell division pr 78.7 89 0.0019 35.2 16.0 42 179-221 437-478 (1486)
59 PF05278 PEARLI-4: Arabidopsis 78.2 14 0.00031 34.3 8.5 55 74-128 144-204 (269)
60 TIGR02209 ftsL_broad cell divi 77.7 17 0.00037 26.4 7.3 7 104-110 39-45 (85)
61 PRK13428 F0F1 ATP synthase sub 77.5 38 0.00083 32.8 11.6 63 79-141 35-100 (445)
62 TIGR01069 mutS2 MutS2 family p 77.2 25 0.00053 36.5 10.7 60 78-137 510-571 (771)
63 CHL00118 atpG ATP synthase CF0 76.7 41 0.00088 27.7 11.7 37 79-115 56-93 (156)
64 PF10146 zf-C4H2: Zinc finger- 76.1 27 0.00058 31.4 9.5 87 77-163 6-103 (230)
65 PF06305 DUF1049: Protein of u 75.7 9.2 0.0002 26.8 5.2 34 58-91 27-60 (68)
66 TIGR03319 YmdA_YtgF conserved 75.5 69 0.0015 31.8 12.9 15 208-222 173-187 (514)
67 PF03672 UPF0154: Uncharacteri 75.2 6.1 0.00013 29.5 4.3 19 55-73 3-21 (64)
68 COG1842 PspA Phage shock prote 75.1 26 0.00057 31.3 9.1 34 95-128 30-63 (225)
69 KOG0980|consensus 75.1 26 0.00057 37.7 10.3 74 97-173 446-519 (980)
70 PF14991 MLANA: Protein melan- 74.2 1 2.2E-05 37.3 0.0 24 53-76 30-53 (118)
71 PF02403 Seryl_tRNA_N: Seryl-t 74.2 37 0.00079 25.9 8.8 80 86-179 26-105 (108)
72 PF12128 DUF3584: Protein of u 73.4 17 0.00038 39.1 8.8 40 144-187 507-546 (1201)
73 PF07926 TPR_MLP1_2: TPR/MLP1/ 73.3 30 0.00064 27.9 8.3 24 149-172 67-90 (132)
74 smart00787 Spc7 Spc7 kinetocho 73.0 29 0.00064 32.3 9.2 32 149-180 240-272 (312)
75 TIGR02209 ftsL_broad cell divi 73.0 29 0.00062 25.3 7.5 14 97-110 39-52 (85)
76 PRK12705 hypothetical protein; 72.8 1.1E+02 0.0024 30.8 17.3 14 209-222 168-181 (508)
77 PF03962 Mnd1: Mnd1 family; I 72.7 36 0.00077 29.4 9.1 30 78-110 68-97 (188)
78 PF07888 CALCOCO1: Calcium bin 72.5 1.2E+02 0.0025 31.0 15.0 64 154-222 331-401 (546)
79 PRK14473 F0F1 ATP synthase sub 72.3 53 0.0012 27.0 13.9 64 78-141 41-107 (164)
80 TIGR00606 rad50 rad50. This fa 72.0 1.3E+02 0.0028 32.9 14.9 25 149-173 889-913 (1311)
81 PRK10884 SH3 domain-containing 72.0 29 0.00063 30.6 8.5 22 149-170 133-154 (206)
82 PF10473 CENP-F_leu_zip: Leuci 71.9 60 0.0013 27.4 10.6 18 75-92 20-37 (140)
83 PF14235 DUF4337: Domain of un 71.9 18 0.0004 30.6 7.0 58 69-128 41-98 (157)
84 KOG0933|consensus 70.9 1.2E+02 0.0025 33.6 13.9 37 180-220 814-850 (1174)
85 PRK04863 mukB cell division pr 70.6 1E+02 0.0022 34.8 13.9 45 79-123 918-962 (1486)
86 KOG2629|consensus 70.5 83 0.0018 29.9 11.5 50 31-85 63-112 (300)
87 PRK00523 hypothetical protein; 70.4 11 0.00024 28.8 4.8 23 51-73 7-29 (72)
88 PF10498 IFT57: Intra-flagella 70.2 1E+02 0.0022 29.4 13.7 34 75-111 216-249 (359)
89 KOG0996|consensus 70.1 1.2E+02 0.0027 33.8 14.1 96 78-173 408-511 (1293)
90 PF09730 BicD: Microtubule-ass 69.9 69 0.0015 33.6 11.8 19 149-167 129-147 (717)
91 PF11559 ADIP: Afadin- and alp 69.7 58 0.0013 26.4 9.3 45 81-128 61-105 (151)
92 PRK11281 hypothetical protein; 69.7 81 0.0018 34.5 12.7 40 79-118 63-102 (1113)
93 PRK01844 hypothetical protein; 69.5 13 0.00028 28.4 5.0 20 54-73 9-28 (72)
94 PF09726 Macoilin: Transmembra 69.3 1.5E+02 0.0032 30.9 14.2 20 153-172 550-569 (697)
95 PF15619 Lebercilin: Ciliary p 69.3 34 0.00073 29.9 8.2 73 99-171 121-194 (194)
96 PF10473 CENP-F_leu_zip: Leuci 69.0 40 0.00087 28.4 8.3 14 149-162 67-80 (140)
97 COG3763 Uncharacterized protei 68.9 11 0.00024 28.8 4.5 15 59-73 14-28 (71)
98 COG1579 Zn-ribbon protein, pos 68.7 95 0.0021 28.4 13.1 38 91-128 33-70 (239)
99 PF08139 LPAM_1: Prokaryotic m 68.4 4.4 9.5E-05 25.3 1.9 22 46-67 2-23 (25)
100 TIGR01010 BexC_CtrB_KpsE polys 68.4 43 0.00093 30.7 9.1 102 90-194 178-289 (362)
101 KOG0996|consensus 68.1 1.7E+02 0.0037 32.8 14.5 23 194-216 551-573 (1293)
102 PRK10361 DNA recombination pro 68.0 1.4E+02 0.003 30.0 13.6 14 57-70 9-22 (475)
103 PRK12705 hypothetical protein; 67.9 1.2E+02 0.0027 30.4 12.8 15 56-70 8-22 (508)
104 PHA02047 phage lambda Rz1-like 66.8 69 0.0015 26.1 10.9 37 54-90 5-45 (101)
105 KOG0161|consensus 66.6 1.1E+02 0.0025 35.5 13.5 119 4-128 1560-1699(1930)
106 TIGR02168 SMC_prok_B chromosom 66.3 1.6E+02 0.0035 30.1 13.4 8 81-88 679-686 (1179)
107 PF13268 DUF4059: Protein of u 66.1 8.4 0.00018 29.5 3.4 28 50-77 9-36 (72)
108 PRK03918 chromosome segregatio 63.8 1.7E+02 0.0038 29.7 14.9 18 151-168 662-679 (880)
109 KOG0250|consensus 62.9 1.2E+02 0.0025 33.5 12.1 60 154-219 796-856 (1074)
110 PRK10803 tol-pal system protei 62.6 55 0.0012 29.5 8.5 22 53-74 7-28 (263)
111 PF04849 HAP1_N: HAP1 N-termin 62.4 1.4E+02 0.0031 28.3 11.8 122 98-221 162-305 (306)
112 PHA02562 46 endonuclease subun 61.8 1.3E+02 0.0028 28.8 11.3 98 73-173 307-404 (562)
113 TIGR01386 cztS_silS_copS heavy 61.7 79 0.0017 28.2 9.3 23 90-112 219-241 (457)
114 PF12777 MT: Microtubule-bindi 61.3 40 0.00086 31.2 7.6 38 91-128 237-274 (344)
115 PRK06531 yajC preprotein trans 61.2 11 0.00025 30.6 3.6 32 54-86 3-35 (113)
116 PF04111 APG6: Autophagy prote 61.0 63 0.0014 30.0 8.8 88 79-172 43-130 (314)
117 PF12777 MT: Microtubule-bindi 60.4 1.1E+02 0.0025 28.3 10.4 30 154-183 81-120 (344)
118 PF05545 FixQ: Cbb3-type cytoc 59.9 18 0.00039 24.6 3.9 25 50-74 9-33 (49)
119 PF05701 WEMBL: Weak chloropla 59.3 1.9E+02 0.0041 28.6 14.7 63 104-170 138-201 (522)
120 PRK12704 phosphodiesterase; Pr 59.2 2E+02 0.0042 28.8 15.2 7 65-71 16-22 (520)
121 KOG0804|consensus 59.0 1.2E+02 0.0025 30.7 10.6 55 73-129 333-387 (493)
122 PRK03918 chromosome segregatio 58.8 2.1E+02 0.0046 29.0 16.4 15 26-40 124-138 (880)
123 PF07047 OPA3: Optic atrophy 3 58.5 51 0.0011 26.9 7.0 32 61-92 87-118 (134)
124 PF04375 HemX: HemX; InterPro 58.4 1.7E+02 0.0036 27.7 12.9 24 49-72 27-50 (372)
125 COG2959 HemX Uncharacterized e 57.8 1E+02 0.0022 30.3 9.8 41 54-94 38-78 (391)
126 PF13801 Metal_resist: Heavy-m 56.9 74 0.0016 23.2 9.2 36 56-91 5-42 (125)
127 PF06298 PsbY: Photosystem II 56.8 20 0.00043 24.2 3.5 32 55-86 5-36 (36)
128 PF11932 DUF3450: Protein of u 56.5 1.4E+02 0.003 26.2 10.3 8 103-110 42-49 (251)
129 PRK02224 chromosome segregatio 56.4 90 0.0019 31.9 9.7 49 77-128 347-395 (880)
130 PF07888 CALCOCO1: Calcium bin 56.3 1.3E+02 0.0029 30.7 10.7 45 79-123 143-191 (546)
131 PF11460 DUF3007: Protein of u 55.6 32 0.00069 28.0 5.2 57 43-108 29-90 (104)
132 PF13851 GAS: Growth-arrest sp 55.3 1.4E+02 0.0031 26.0 11.1 32 153-184 148-182 (201)
133 PF06667 PspB: Phage shock pro 54.7 25 0.00055 26.8 4.3 25 55-79 10-34 (75)
134 COG4372 Uncharacterized protei 54.3 77 0.0017 31.6 8.5 68 59-128 53-127 (499)
135 PRK04654 sec-independent trans 54.3 1.1E+02 0.0023 27.9 8.8 13 98-110 56-68 (214)
136 KOG2991|consensus 54.1 1.2E+02 0.0026 28.9 9.4 121 83-206 105-255 (330)
137 COG1862 YajC Preprotein transl 53.3 24 0.00052 28.1 4.1 35 53-87 8-43 (97)
138 PF11770 GAPT: GRB2-binding ad 53.0 5.4 0.00012 34.5 0.5 18 55-72 18-35 (158)
139 TIGR03185 DNA_S_dndD DNA sulfu 52.8 2.6E+02 0.0055 28.2 17.4 34 149-182 263-297 (650)
140 PF10186 Atg14: UV radiation r 52.6 1.5E+02 0.0033 25.5 12.2 17 92-108 30-46 (302)
141 COG3879 Uncharacterized protei 51.4 1.9E+02 0.0041 26.8 10.1 63 54-128 20-82 (247)
142 TIGR01843 type_I_hlyD type I s 51.4 1.9E+02 0.0041 26.2 12.8 11 203-213 250-260 (423)
143 PF06305 DUF1049: Protein of u 51.3 28 0.00061 24.3 3.9 38 54-91 26-67 (68)
144 PF11119 DUF2633: Protein of u 51.3 22 0.00048 26.3 3.4 20 46-65 4-23 (59)
145 KOG4674|consensus 50.7 4.8E+02 0.01 30.7 15.8 174 32-221 617-820 (1822)
146 PRK09835 sensor kinase CusS; P 49.7 1.5E+02 0.0032 26.9 9.2 22 91-112 241-262 (482)
147 PF09755 DUF2046: Uncharacteri 49.3 2.1E+02 0.0047 27.2 10.3 25 148-172 229-253 (310)
148 TIGR01069 mutS2 MutS2 family p 49.1 1.8E+02 0.0038 30.5 10.6 53 76-128 501-554 (771)
149 TIGR00606 rad50 rad50. This fa 48.5 4.1E+02 0.0088 29.2 16.5 128 86-221 207-341 (1311)
150 PF10481 CENP-F_N: Cenp-F N-te 48.2 2.5E+02 0.0055 26.8 12.0 60 151-212 112-191 (307)
151 TIGR03185 DNA_S_dndD DNA sulfu 48.0 1.2E+02 0.0025 30.5 8.9 6 181-186 348-353 (650)
152 PF10234 Cluap1: Clusterin-ass 47.9 1.1E+02 0.0025 28.3 8.2 81 48-128 116-201 (267)
153 PRK15396 murein lipoprotein; P 47.9 1.1E+02 0.0023 23.5 6.8 24 61-92 15-38 (78)
154 PF13807 GNVR: G-rich domain o 47.5 66 0.0014 23.6 5.5 69 4-72 6-79 (82)
155 TIGR02338 gimC_beta prefoldin, 47.1 1.4E+02 0.0029 23.3 9.1 32 98-129 5-36 (110)
156 CHL00196 psbY photosystem II p 46.8 40 0.00086 22.8 3.8 31 55-85 5-35 (36)
157 PRK13455 F0F1 ATP synthase sub 46.7 1.7E+02 0.0038 24.5 12.9 37 89-125 65-101 (184)
158 PF06637 PV-1: PV-1 protein (P 46.6 1.6E+02 0.0034 29.3 9.2 72 101-172 311-387 (442)
159 PRK00409 recombination and DNA 46.4 1.3E+02 0.0029 31.3 9.3 70 59-128 479-559 (782)
160 PF02936 COX4: Cytochrome c ox 46.0 19 0.00042 30.0 2.7 42 30-72 54-95 (142)
161 COG3883 Uncharacterized protei 45.9 2.6E+02 0.0055 26.1 11.3 24 149-172 81-104 (265)
162 PF13949 ALIX_LYPXL_bnd: ALIX 45.8 2.1E+02 0.0045 25.1 10.3 75 76-168 22-97 (296)
163 PF04977 DivIC: Septum formati 45.7 43 0.00093 23.6 4.1 15 101-115 29-43 (80)
164 PF12430 ABA_GPCR: Abscisic ac 45.6 18 0.00039 31.2 2.6 34 41-74 163-196 (196)
165 TIGR02230 ATPase_gene1 F0F1-AT 45.6 21 0.00046 28.5 2.8 19 54-72 76-94 (100)
166 PRK13240 pbsY photosystem II p 45.3 53 0.0011 22.6 4.2 33 55-87 5-37 (40)
167 PF10168 Nup88: Nuclear pore c 45.2 3.2E+02 0.0069 28.6 11.7 51 78-128 564-618 (717)
168 PF14283 DUF4366: Domain of un 45.1 6.1 0.00013 35.2 -0.4 8 64-71 172-179 (218)
169 PF04012 PspA_IM30: PspA/IM30 45.0 2E+02 0.0042 24.6 11.8 50 79-128 12-62 (221)
170 KOG4606|consensus 44.9 23 0.00049 29.6 2.9 32 45-76 25-56 (126)
171 KOG2391|consensus 44.7 1E+02 0.0022 30.0 7.6 46 73-128 219-264 (365)
172 KOG1853|consensus 44.7 2.3E+02 0.0049 27.0 9.6 56 96-172 133-188 (333)
173 COG4741 Predicted secreted end 44.6 2.2E+02 0.0048 25.1 9.5 28 101-128 47-74 (175)
174 KOG0977|consensus 44.5 85 0.0018 32.0 7.3 76 95-173 119-194 (546)
175 PF08826 DMPK_coil: DMPK coile 44.2 1.3E+02 0.0027 22.2 8.4 14 149-162 47-60 (61)
176 KOG0999|consensus 44.2 1.5E+02 0.0032 31.1 9.0 57 91-149 116-176 (772)
177 KOG4657|consensus 44.1 2.7E+02 0.0058 25.9 12.2 112 51-167 21-133 (246)
178 PF07106 TBPIP: Tat binding pr 43.7 1E+02 0.0022 25.5 6.6 29 100-128 76-104 (169)
179 PF12718 Tropomyosin_1: Tropom 43.4 1.9E+02 0.0041 24.0 9.2 24 149-172 81-104 (143)
180 PRK02224 chromosome segregatio 43.3 1.5E+02 0.0033 30.3 9.0 17 98-114 208-224 (880)
181 PRK06568 F0F1 ATP synthase sub 43.3 2.1E+02 0.0045 24.3 11.6 49 92-140 52-102 (154)
182 KOG0933|consensus 42.9 4.9E+02 0.011 29.1 12.8 53 153-221 411-463 (1174)
183 PRK11556 multidrug efflux syst 42.8 23 0.0005 33.5 3.0 24 50-73 5-28 (415)
184 PF07798 DUF1640: Protein of u 42.2 2.1E+02 0.0045 24.1 10.5 16 154-169 137-152 (177)
185 PF09755 DUF2046: Uncharacteri 42.0 2.9E+02 0.0064 26.3 10.1 40 82-128 80-131 (310)
186 PF08826 DMPK_coil: DMPK coile 41.6 1.4E+02 0.003 21.9 6.5 14 153-166 44-57 (61)
187 PF10368 YkyA: Putative cell-w 41.5 1.7E+02 0.0038 25.6 8.0 45 58-110 2-46 (204)
188 PF12729 4HB_MCP_1: Four helix 41.0 1.6E+02 0.0034 22.3 13.3 49 57-105 13-65 (181)
189 COG4026 Uncharacterized protei 40.9 1.9E+02 0.0041 27.1 8.4 21 98-118 137-157 (290)
190 PF14915 CCDC144C: CCDC144C pr 40.7 2.6E+02 0.0056 26.7 9.4 37 92-128 87-123 (305)
191 PF06160 EzrA: Septation ring 40.7 3.8E+02 0.0083 26.7 13.0 43 154-196 135-177 (560)
192 PF03203 MerC: MerC mercury re 40.4 37 0.00081 26.7 3.4 31 48-78 36-66 (116)
193 PLN02678 seryl-tRNA synthetase 40.4 1.5E+02 0.0033 29.2 8.2 74 87-174 31-104 (448)
194 PF05667 DUF812: Protein of un 40.3 1.8E+02 0.0039 29.7 9.0 38 91-128 389-426 (594)
195 PF13172 PepSY_TM_1: PepSY-ass 40.2 32 0.0007 21.8 2.5 18 54-71 15-32 (34)
196 TIGR02976 phageshock_pspB phag 39.8 56 0.0012 24.8 4.2 21 56-76 11-31 (75)
197 PF00038 Filament: Intermediat 39.7 2.7E+02 0.0059 24.7 15.6 83 84-172 204-286 (312)
198 PF12329 TMF_DNA_bd: TATA elem 39.4 1.6E+02 0.0035 21.9 8.4 33 79-111 12-44 (74)
199 TIGR01843 type_I_hlyD type I s 39.1 3E+02 0.0064 24.9 9.6 24 150-173 248-271 (423)
200 KOG4593|consensus 38.9 1.5E+02 0.0033 31.2 8.3 51 78-128 239-293 (716)
201 PRK10856 cytoskeletal protein 38.8 38 0.00083 31.7 3.7 19 54-72 117-135 (331)
202 PRK10772 cell division protein 38.5 1.1E+02 0.0024 24.8 5.9 32 59-93 28-59 (108)
203 PRK11578 macrolide transporter 38.1 1.6E+02 0.0034 27.0 7.6 20 154-173 164-183 (370)
204 COG5393 Predicted membrane pro 38.1 74 0.0016 26.9 4.9 33 46-78 77-111 (131)
205 KOG0976|consensus 37.9 4.7E+02 0.01 28.9 11.6 29 144-172 413-441 (1265)
206 PF15556 Zwint: ZW10 interacto 37.8 3.3E+02 0.0072 25.1 9.8 88 97-195 106-194 (252)
207 PRK09973 putative outer membra 37.7 1.8E+02 0.004 22.8 6.8 23 62-92 15-37 (85)
208 PF04011 LemA: LemA family; I 37.7 2.5E+02 0.0053 23.6 10.4 38 54-91 3-42 (186)
209 PF00769 ERM: Ezrin/radixin/mo 37.6 3E+02 0.0066 24.6 11.4 19 154-172 102-120 (246)
210 COG4736 CcoQ Cbb3-type cytochr 37.6 46 0.00099 24.6 3.2 27 52-78 11-37 (60)
211 TIGR01730 RND_mfp RND family e 37.4 2.5E+02 0.0054 24.2 8.4 27 153-179 114-140 (322)
212 PF14316 DUF4381: Domain of un 36.8 1.4E+02 0.003 24.3 6.3 38 54-92 25-62 (146)
213 KOG1853|consensus 36.7 3.8E+02 0.0083 25.6 10.2 24 150-173 75-98 (333)
214 PF06295 DUF1043: Protein of u 36.7 1.4E+02 0.003 24.2 6.3 39 54-92 4-45 (128)
215 COG4942 Membrane-bound metallo 36.7 4.4E+02 0.0095 26.2 11.9 40 89-128 38-77 (420)
216 PF14197 Cep57_CLD_2: Centroso 36.3 1.8E+02 0.0039 21.6 7.3 18 149-166 48-65 (69)
217 PF04201 TPD52: Tumour protein 36.0 57 0.0012 28.4 4.1 24 149-172 37-60 (162)
218 PRK07021 fliL flagellar basal 35.4 36 0.00078 28.3 2.8 11 63-73 32-42 (162)
219 PF12553 DUF3742: Protein of u 35.0 27 0.00059 25.1 1.7 16 56-71 1-16 (54)
220 PRK10549 signal transduction h 34.9 2.9E+02 0.0064 24.9 8.7 16 93-108 221-236 (466)
221 PRK01156 chromosome segregatio 34.9 5.3E+02 0.012 26.7 13.3 151 71-222 338-499 (895)
222 PF15456 Uds1: Up-regulated Du 34.7 2.6E+02 0.0056 23.0 8.6 76 86-172 22-105 (124)
223 TIGR00998 8a0101 efflux pump m 34.3 3.3E+02 0.0072 24.1 18.0 22 50-71 3-24 (334)
224 PRK01919 tatB sec-independent 34.2 3.3E+02 0.0071 24.0 9.1 8 66-73 33-40 (169)
225 PF12279 DUF3619: Protein of u 34.1 2E+02 0.0042 23.9 6.8 60 10-69 28-89 (131)
226 PRK09458 pspB phage shock prot 33.9 73 0.0016 24.6 3.9 49 55-105 10-58 (75)
227 PF03962 Mnd1: Mnd1 family; I 33.9 3.1E+02 0.0067 23.7 8.6 31 98-128 64-94 (188)
228 TIGR02956 TMAO_torS TMAO reduc 33.8 5.2E+02 0.011 26.2 13.0 13 93-105 389-401 (968)
229 PRK13454 F0F1 ATP synthase sub 33.6 3E+02 0.0064 23.4 13.0 39 79-117 65-104 (181)
230 PF05529 Bap31: B-cell recepto 33.3 2.9E+02 0.0064 23.2 8.3 19 154-172 160-178 (192)
231 PF07047 OPA3: Optic atrophy 3 33.3 2.5E+02 0.0054 22.9 7.3 58 46-110 64-126 (134)
232 PF03938 OmpH: Outer membrane 33.1 2.5E+02 0.0054 22.3 7.8 34 72-105 14-48 (158)
233 PF10174 Cast: RIM-binding pro 33.0 5.3E+02 0.012 27.4 11.2 73 100-172 462-538 (775)
234 PF05911 DUF869: Plant protein 32.8 6.1E+02 0.013 27.0 11.6 40 154-193 672-711 (769)
235 PF11068 YlqD: YlqD protein; 32.5 2.9E+02 0.0063 22.9 10.4 60 149-212 28-87 (131)
236 TIGR02977 phageshock_pspA phag 32.4 3.4E+02 0.0073 23.6 11.8 49 80-128 14-63 (219)
237 TIGR02887 spore_ger_x_C germin 32.3 21 0.00045 32.6 0.9 15 54-68 5-19 (371)
238 PF11381 DUF3185: Protein of u 32.2 52 0.0011 24.1 2.8 29 57-85 5-33 (59)
239 PF00038 Filament: Intermediat 32.1 3.6E+02 0.0079 23.9 10.9 35 94-128 80-114 (312)
240 PF00672 HAMP: HAMP domain; I 32.0 48 0.001 22.5 2.5 15 58-72 7-21 (70)
241 COG1907 Predicted archaeal sug 31.9 74 0.0016 30.4 4.4 41 51-91 216-256 (312)
242 COG5547 Small integral membran 31.8 62 0.0013 24.2 3.1 23 49-71 28-50 (62)
243 KOG0971|consensus 31.8 1.5E+02 0.0032 32.7 7.0 17 153-169 495-511 (1243)
244 PF14143 YrhC: YrhC-like prote 31.7 88 0.0019 23.8 4.1 39 44-82 31-69 (72)
245 KOG2129|consensus 31.7 4.3E+02 0.0093 26.9 9.7 41 151-191 256-306 (552)
246 PRK10755 sensor protein BasS/P 31.7 3.4E+02 0.0074 23.8 8.4 16 75-90 83-98 (356)
247 PF09771 Tmemb_18A: Transmembr 31.7 57 0.0012 27.2 3.3 33 45-78 24-56 (125)
248 PF08496 Peptidase_S49_N: Pept 31.6 2.7E+02 0.0059 23.7 7.4 26 51-76 11-36 (155)
249 PF05010 TACC: Transforming ac 31.5 3.8E+02 0.0082 23.9 15.3 122 94-221 21-158 (207)
250 PF11293 DUF3094: Protein of u 31.3 85 0.0018 23.1 3.7 30 38-67 18-47 (55)
251 TIGR01710 typeII_sec_gspG gene 31.3 1.9E+02 0.0042 23.1 6.3 20 73-92 27-46 (134)
252 PF11559 ADIP: Afadin- and alp 31.2 2.8E+02 0.0061 22.4 15.1 15 96-110 66-80 (151)
253 PF10168 Nup88: Nuclear pore c 30.9 4.5E+02 0.0098 27.5 10.2 25 104-128 580-604 (717)
254 TIGR01730 RND_mfp RND family e 30.9 2.3E+02 0.005 24.5 7.1 27 146-172 100-126 (322)
255 PF15294 Leu_zip: Leucine zipp 30.6 4.6E+02 0.01 24.6 12.9 71 101-172 144-214 (278)
256 PF02656 DUF202: Domain of unk 30.2 97 0.0021 22.0 3.9 42 36-77 29-70 (73)
257 KOG4484|consensus 30.2 4.1E+02 0.0088 23.9 9.9 50 79-128 27-97 (199)
258 PHA01750 hypothetical protein 30.1 2.6E+02 0.0056 21.6 9.0 56 52-112 2-58 (75)
259 TIGR02680 conserved hypothetic 30.0 8.2E+02 0.018 27.3 15.3 35 76-110 217-251 (1353)
260 PF14257 DUF4349: Domain of un 29.6 1.2E+02 0.0025 26.8 5.1 22 150-171 164-185 (262)
261 cd00922 Cyt_c_Oxidase_IV Cytoc 29.2 94 0.002 25.8 4.2 43 31-75 55-97 (136)
262 TIGR03789 pdsO proteobacterial 29.0 4E+02 0.0088 24.1 8.5 39 79-117 84-122 (239)
263 PF01576 Myosin_tail_1: Myosin 28.8 19 0.0004 37.8 0.0 126 92-220 211-349 (859)
264 PRK08455 fliL flagellar basal 28.8 53 0.0011 28.4 2.7 16 56-71 26-41 (182)
265 PF13042 DUF3902: Protein of u 28.8 47 0.001 28.9 2.4 18 57-74 8-26 (161)
266 KOG3653|consensus 28.2 67 0.0015 32.6 3.7 23 57-79 164-186 (534)
267 TIGR00414 serS seryl-tRNA synt 27.9 3.2E+02 0.0069 26.3 8.1 32 87-118 28-59 (418)
268 PF09933 DUF2165: Predicted sm 27.8 38 0.00082 29.1 1.7 14 62-75 121-134 (160)
269 KOG0994|consensus 27.6 9.2E+02 0.02 27.9 12.0 13 29-41 1480-1492(1758)
270 PRK10557 hypothetical protein; 27.5 3.3E+02 0.0071 23.5 7.4 11 97-107 55-65 (192)
271 KOG1029|consensus 27.5 5.1E+02 0.011 28.5 9.9 29 100-128 490-518 (1118)
272 PRK12757 cell division protein 27.4 30 0.00065 31.9 1.1 21 55-76 3-24 (256)
273 COG1196 Smc Chromosome segrega 27.4 8.3E+02 0.018 26.6 15.4 14 155-168 793-806 (1163)
274 PRK00708 sec-independent trans 27.2 3.8E+02 0.0082 24.2 7.9 21 66-86 33-55 (209)
275 PRK14475 F0F1 ATP synthase sub 27.2 3.6E+02 0.0079 22.3 12.4 44 75-118 29-77 (167)
276 COG1196 Smc Chromosome segrega 27.1 8.4E+02 0.018 26.5 14.1 23 13-35 553-578 (1163)
277 KOG0804|consensus 27.0 2.9E+02 0.0064 28.0 7.8 17 144-160 431-447 (493)
278 PF06388 DUF1075: Protein of u 27.0 43 0.00093 28.6 1.8 40 38-77 70-117 (146)
279 PF12911 OppC_N: N-terminal TM 26.9 58 0.0013 21.9 2.2 36 15-72 6-41 (56)
280 COG0682 Lgt Prolipoprotein dia 26.9 67 0.0015 30.0 3.2 56 21-76 214-279 (287)
281 KOG0483|consensus 26.7 1.2E+02 0.0026 26.9 4.7 25 66-93 95-119 (198)
282 COG4792 EscU Type III secretor 26.7 1.3E+02 0.0029 29.0 5.2 101 6-107 126-247 (349)
283 PLN02715 lipid phosphate phosp 26.7 50 0.0011 31.3 2.4 43 28-77 229-271 (327)
284 KOG0288|consensus 26.6 3E+02 0.0064 27.7 7.7 38 92-129 51-89 (459)
285 PRK01770 sec-independent trans 26.6 4.4E+02 0.0095 23.1 8.2 29 80-108 38-66 (171)
286 PF07139 DUF1387: Protein of u 26.5 3E+02 0.0065 26.2 7.4 92 90-194 183-277 (302)
287 PRK15030 multidrug efflux syst 26.4 4.2E+02 0.009 24.7 8.4 20 154-173 154-173 (397)
288 PF12325 TMF_TATA_bd: TATA ele 26.3 3.6E+02 0.0079 22.0 7.3 43 73-115 45-87 (120)
289 PF12273 RCR: Chitin synthesis 26.1 70 0.0015 25.5 2.9 9 62-70 15-23 (130)
290 PF11743 DUF3301: Protein of u 26.0 1.1E+02 0.0024 23.8 3.8 17 72-88 20-36 (97)
291 PHA00350 putative assembly pro 25.9 47 0.001 32.2 2.1 52 20-72 192-245 (399)
292 PF05791 Bacillus_HBL: Bacillu 25.8 4.2E+02 0.009 22.6 9.7 119 45-165 61-180 (184)
293 KOG0243|consensus 25.8 8.7E+02 0.019 27.0 11.4 35 94-128 460-494 (1041)
294 PF07006 DUF1310: Protein of u 25.7 57 0.0012 26.8 2.3 18 58-75 11-28 (122)
295 PF02529 PetG: Cytochrome B6-F 25.7 85 0.0018 21.4 2.7 27 52-78 7-33 (37)
296 PF07989 Microtub_assoc: Micro 25.7 2.9E+02 0.0063 20.7 6.9 20 153-172 55-74 (75)
297 TIGR01241 FtsH_fam ATP-depende 25.6 70 0.0015 30.8 3.2 22 51-72 2-24 (495)
298 PF12297 EVC2_like: Ellis van 25.5 89 0.0019 31.0 3.9 46 27-72 40-90 (429)
299 PRK10927 essential cell divisi 25.5 34 0.00075 32.6 1.1 23 54-76 37-59 (319)
300 PRK05585 yajC preprotein trans 25.4 1.3E+02 0.0028 24.0 4.2 20 68-88 33-53 (106)
301 PRK15136 multidrug efflux syst 25.3 97 0.0021 29.1 4.1 26 146-171 156-181 (390)
302 PF03528 Rabaptin: Rabaptin; 25.1 2.3E+02 0.0049 23.1 5.6 34 97-141 64-97 (106)
303 PF15062 ARL6IP6: Haemopoietic 25.0 60 0.0013 25.7 2.2 27 46-72 12-42 (85)
304 cd01324 cbb3_Oxidase_CcoQ Cyto 25.0 1.2E+02 0.0026 21.0 3.5 25 53-77 13-37 (48)
305 PF03148 Tektin: Tektin family 25.0 4.9E+02 0.011 24.7 8.6 65 101-182 249-313 (384)
306 PRK14472 F0F1 ATP synthase sub 24.8 4.1E+02 0.0088 22.1 12.0 40 80-119 42-86 (175)
307 PRK04778 septation ring format 24.7 7.1E+02 0.015 24.8 14.7 159 54-222 4-207 (569)
308 PF12597 DUF3767: Protein of u 24.6 2.4E+02 0.0053 22.9 5.7 40 52-91 69-108 (118)
309 PF05269 Phage_CII: Bacterioph 24.5 60 0.0013 25.6 2.1 25 42-66 34-59 (91)
310 PRK04098 sec-independent trans 24.4 4.5E+02 0.0098 22.8 7.6 29 81-109 39-67 (158)
311 smart00787 Spc7 Spc7 kinetocho 24.4 5.9E+02 0.013 23.8 13.4 26 194-219 241-266 (312)
312 KOG3433|consensus 24.4 2.4E+02 0.0052 25.5 6.0 14 79-92 81-94 (203)
313 PF06008 Laminin_I: Laminin Do 24.3 5E+02 0.011 22.9 10.9 74 75-168 126-205 (264)
314 PRK08476 F0F1 ATP synthase sub 24.3 3.9E+02 0.0085 21.7 12.6 32 80-111 42-74 (141)
315 PRK05696 fliL flagellar basal 24.1 68 0.0015 26.9 2.6 12 63-74 34-45 (170)
316 PF08883 DOPA_dioxygen: Dopa 4 24.0 49 0.0011 26.6 1.6 31 3-34 5-37 (104)
317 PF01576 Myosin_tail_1: Myosin 24.0 26 0.00056 36.8 0.0 58 71-128 573-641 (859)
318 CHL00176 ftsH cell division pr 24.0 1.2E+02 0.0027 30.9 4.8 66 41-106 117-203 (638)
319 COG4726 PilX Tfp pilus assembl 23.9 2.6E+02 0.0057 25.1 6.2 49 55-107 23-71 (196)
320 KOG1029|consensus 23.8 3.7E+02 0.008 29.4 8.1 45 175-220 366-410 (1118)
321 TIGR03521 GldG gliding-associa 23.7 67 0.0014 31.8 2.8 22 55-76 530-551 (552)
322 PF11176 DUF2962: Protein of u 23.6 1.9E+02 0.0042 24.3 5.1 36 154-198 83-118 (155)
323 TIGR03321 alt_F1F0_F0_B altern 23.3 5.2E+02 0.011 22.8 11.6 40 81-120 30-74 (246)
324 PF10721 DUF2514: Protein of u 23.2 4.7E+02 0.01 22.3 11.6 16 145-160 83-98 (162)
325 PF11172 DUF2959: Protein of u 23.2 5.6E+02 0.012 23.1 8.3 70 142-218 113-196 (201)
326 PF13703 PepSY_TM_2: PepSY-ass 23.0 83 0.0018 23.4 2.6 19 54-72 70-88 (88)
327 PF12128 DUF3584: Protein of u 22.7 1E+03 0.022 26.1 14.8 35 93-127 625-659 (1201)
328 PF11346 DUF3149: Protein of u 22.6 1.2E+02 0.0027 20.8 3.1 8 80-87 33-40 (42)
329 KOG2792|consensus 22.6 1E+02 0.0023 29.0 3.6 31 45-75 68-98 (280)
330 PRK09731 putative general secr 22.5 5.3E+02 0.011 22.6 7.8 26 52-77 37-62 (178)
331 PRK05431 seryl-tRNA synthetase 22.5 3.3E+02 0.0071 26.3 7.1 32 87-118 26-57 (425)
332 PF12963 DUF3852: Protein of u 22.4 95 0.0021 25.6 2.9 23 52-74 58-80 (111)
333 PF13747 DUF4164: Domain of un 22.2 3.7E+02 0.008 20.7 7.1 9 153-161 51-59 (89)
334 PF11466 Doppel: Prion-like pr 22.0 31 0.00066 22.5 0.0 9 64-72 5-13 (30)
335 PF03814 KdpA: Potassium-trans 22.0 1.8E+02 0.0038 29.9 5.3 36 46-81 158-200 (552)
336 PF13706 PepSY_TM_3: PepSY-ass 22.0 1.1E+02 0.0024 19.8 2.7 25 48-72 7-32 (37)
337 PF13805 Pil1: Eisosome compon 22.0 6.6E+02 0.014 23.5 9.3 54 49-107 96-149 (271)
338 PF13747 DUF4164: Domain of un 22.0 3.8E+02 0.0081 20.7 7.3 16 149-164 71-87 (89)
339 PF10211 Ax_dynein_light: Axon 21.9 5.2E+02 0.011 22.3 9.3 69 95-165 119-187 (189)
340 PRK09174 F0F1 ATP synthase sub 21.9 5.4E+02 0.012 22.5 13.8 35 81-115 89-124 (204)
341 PF08912 Rho_Binding: Rho Bind 21.9 3.6E+02 0.0079 20.5 6.2 32 98-129 19-50 (69)
342 PF10458 Val_tRNA-synt_C: Valy 21.9 3E+02 0.0066 19.6 5.9 29 100-128 1-29 (66)
343 PF13974 YebO: YebO-like prote 21.9 49 0.0011 25.8 1.1 22 57-78 2-23 (80)
344 COG1382 GimC Prefoldin, chaper 21.8 4.7E+02 0.01 21.7 8.1 41 101-141 11-51 (119)
345 KOG0977|consensus 21.8 8.6E+02 0.019 25.0 10.0 55 144-202 109-163 (546)
346 PF11169 DUF2956: Protein of u 21.8 1.8E+02 0.0039 23.8 4.4 60 10-69 42-102 (103)
347 PRK13922 rod shape-determining 21.6 5.5E+02 0.012 22.7 7.9 22 87-108 67-88 (276)
348 PRK09343 prefoldin subunit bet 21.5 4.3E+02 0.0093 21.2 9.3 32 97-128 8-39 (121)
349 PF10267 Tmemb_cc2: Predicted 21.4 5.5E+02 0.012 25.2 8.4 13 14-26 124-136 (395)
350 PRK15136 multidrug efflux syst 21.4 6.8E+02 0.015 23.5 9.7 18 155-172 158-175 (390)
351 KOG4593|consensus 21.3 1E+03 0.022 25.4 10.9 114 52-169 152-296 (716)
352 PF07271 Cytadhesin_P30: Cytad 21.2 2.8E+02 0.0061 26.2 6.1 27 52-81 77-103 (279)
353 PRK07718 fliL flagellar basal 21.2 70 0.0015 26.2 2.0 12 64-75 20-31 (142)
354 PRK11546 zraP zinc resistance 21.1 4E+02 0.0086 22.7 6.5 17 55-71 11-27 (143)
355 PRK13883 conjugal transfer pro 21.1 95 0.0021 26.6 2.8 34 52-89 2-41 (151)
356 TIGR00847 ccoS cytochrome oxid 20.9 1.1E+02 0.0024 21.8 2.7 14 56-69 8-21 (51)
357 PF12761 End3: Actin cytoskele 20.7 2.1E+02 0.0046 25.6 5.0 32 143-174 91-122 (195)
358 PLN02320 seryl-tRNA synthetase 20.6 4.5E+02 0.0098 26.5 7.8 32 87-118 91-122 (502)
359 PRK09578 periplasmic multidrug 20.6 6.8E+02 0.015 23.1 8.5 21 153-173 151-171 (385)
360 TIGR03752 conj_TIGR03752 integ 20.6 7.3E+02 0.016 25.1 9.1 70 98-172 68-140 (472)
361 PRK00226 greA transcription el 20.6 3E+02 0.0064 22.7 5.6 60 97-169 11-75 (157)
362 PF10112 Halogen_Hydrol: 5-bro 20.5 4E+02 0.0086 22.5 6.5 16 57-72 34-49 (199)
363 PRK05886 yajC preprotein trans 20.5 1.9E+02 0.0041 23.5 4.3 34 54-88 4-39 (109)
364 PF09320 DUF1977: Domain of un 20.3 1.6E+02 0.0035 22.8 3.8 27 184-210 47-73 (107)
365 PF14276 DUF4363: Domain of un 20.2 4.2E+02 0.0091 20.5 7.0 13 56-68 4-16 (121)
366 PF12592 DUF3763: Protein of u 20.2 1.5E+02 0.0033 21.4 3.3 30 80-109 26-55 (57)
367 PF10562 CaM_bdg_C0: Calmoduli 20.1 1.4E+02 0.003 19.4 2.8 26 197-222 3-28 (29)
368 PHA02975 hypothetical protein; 20.1 1.3E+02 0.0028 23.0 3.0 9 28-36 8-16 (69)
369 PF14163 SieB: Superinfection 20.0 2.5E+02 0.0054 22.8 5.0 15 175-189 130-144 (151)
No 1
>KOG4403|consensus
Probab=100.00 E-value=5.4e-67 Score=492.84 Aligned_cols=177 Identities=47% Similarity=0.699 Sum_probs=170.1
Q ss_pred ccccccCC-----CCCCchhHHHHHHHHHHHHHHHHHHhhhhhhchHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHH
Q psy11615 37 GKSIDDVD-----RNSTSHVKDYILGTLILIALTICWYVYRQKESSQQHLRRMMKDMEGLQRAELDLANLQKELERARQE 111 (224)
Q Consensus 37 ~~s~D~VD-----Rer~~~wKDi~Lv~slviavgGcWfAy~Qnr~Sk~hl~~Mmkdle~Lq~AE~sl~dlQ~~Le~aqee 111 (224)
++++|.|- ++++||+|||+|+||||||||||||||+||++||.|+++||+|||+||+|||+|+|||++|++||+|
T Consensus 195 LkalDvVLFGpp~~~~~n~~KD~iLv~lili~v~gcw~ay~Qnk~akehv~km~kdle~Lq~aEqsl~dlQk~Lekar~e 274 (575)
T KOG4403|consen 195 LKALDVVLFGPPYKTNHNWTKDFILVVLILIGVGGCWFAYRQNKKAKEHVNKMMKDLEGLQRAEQSLEDLQKRLEKAREE 274 (575)
T ss_pred hhhcceEEecCCcCCCcchhhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46667543 6888888999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHHHHHHHHHHHHhhhhhc-CCCCChhhHHHHhhHH
Q psy11615 112 QENAASEKIKLERRLQEHQALQGDASDLKSSSAFSDLEVCQLKQEIELLRNELQRAEGELEDR-CWAPPPGLQHWLQLTH 190 (224)
Q Consensus 112 ~~~v~~EK~~LE~kl~~~~~ak~ea~rl~~~r~~sd~Els~l~eELe~vR~aL~~AE~eLe~~-~ws~P~~LQ~wLQlT~ 190 (224)
|++|++||++||++|++ |+||+++|+|.+|+.++ .||||||.+|++||++|+++ ||+||++||+|||+||
T Consensus 275 ~rnvavek~~lerkl~e-------a~rl~elreg~e~e~~r--kelE~lR~~L~kAEkele~nS~wsaP~aLQ~wLq~T~ 345 (575)
T KOG4403|consen 275 QRNVAVEKLDLERKLDE-------APRLSELREGVENETSR--KELEQLRVALEKAEKELEANSSWSAPLALQKWLQLTH 345 (575)
T ss_pred hhchhhhhhhHHHHHhh-------hhhhhhhhcchhHHHHH--HHHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHH
Confidence 99999999999999997 99999999999999999 69999999999999999999 8999999999999999
Q ss_pred HHHHHHHHHhHhhHHHHHHHHHHHHHhhcccc
Q psy11615 191 EIENKAYVKKKLMAEKQLQQAREARFDRGKCI 222 (224)
Q Consensus 191 EvE~q~y~~Kk~~AekQL~~AkE~~EKikK~~ 222 (224)
|+||+|||+|||+|||||..|||+|||||||-
T Consensus 346 E~E~q~~~kkrqnaekql~~Ake~~eklkKKr 377 (575)
T KOG4403|consen 346 EVEVQYYNKKRQNAEKQLKEAKEMAEKLKKKR 377 (575)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999984
No 2
>KOG4403|consensus
Probab=99.56 E-value=4e-16 Score=148.92 Aligned_cols=55 Identities=44% Similarity=0.539 Sum_probs=52.4
Q ss_pred chHHHHHHHHHHHHHHhcccccccchhhhhcccccccCC-----------------CCCCchhHHHHHHHHH
Q psy11615 6 MAEKQLQQAREACEKLRKKRSSLVGAFVSTHGKSIDDVD-----------------RNSTSHVKDYILGTLI 60 (224)
Q Consensus 6 ~a~~ql~~a~e~~eki~kKr~s~~gsf~~aH~~s~D~VD-----------------Rer~~~wKDi~Lv~sl 60 (224)
+|||||.+|||+|||||||||||||+||+|||+++|||| |++++||++|+-++.+
T Consensus 358 naekql~~Ake~~eklkKKrssv~gtl~vahgsslDdVD~kIleak~al~evtt~lrErl~RWqQIE~lcGf 429 (575)
T KOG4403|consen 358 NAEKQLKEAKEMAEKLKKKRSSVFGTLHVAHGSSLDDVDHKILEAKSALSEVTTLLRERLHRWQQIESLCGF 429 (575)
T ss_pred hHHHHHHHHHHHHHHHHHhhcchheeeeeccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 799999999999999999999999999999999999999 6999999999987654
No 3
>PRK10920 putative uroporphyrinogen III C-methyltransferase; Provisional
Probab=95.45 E-value=0.25 Score=47.41 Aligned_cols=77 Identities=17% Similarity=0.173 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhc--hHHHHHHHHHhhHhH--------HHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy11615 52 KDYILGTLILIALTICWYVYRQKES--SQQHLRRMMKDMEGL--------QRAELDLANLQKELERARQEQENAASEKIK 121 (224)
Q Consensus 52 KDi~Lv~slviavgGcWfAy~Qnr~--Sk~hl~~Mmkdle~L--------q~AE~sl~dlQ~~Le~aqee~~~v~~EK~~ 121 (224)
.=..++++|++|+||++|+|.|-.. -...+..+...++.+ +..+..+..+...+..++..+......-+.
T Consensus 38 ~l~~~aili~la~g~g~y~~~~qq~~~~~~~~~~L~~ql~~~~~~~~~~~~~l~~~~~~~~~~l~~~e~~~~~l~~q~~~ 117 (390)
T PRK10920 38 VLSAVAIAIALAAGAGLYYHGKQQAQNQTATNDALANQLTALQKAQESQKQELEGILKQQAKALDQANRQQAALAKQLDE 117 (390)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566667788888887754333 222333344444443 222223333334444444444444444444
Q ss_pred HHHHHHH
Q psy11615 122 LERRLQE 128 (224)
Q Consensus 122 LE~kl~~ 128 (224)
|+.++.+
T Consensus 118 Lq~~~~~ 124 (390)
T PRK10920 118 LQQKVAT 124 (390)
T ss_pred HHHHHHH
Confidence 5555543
No 4
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=95.24 E-value=0.027 Score=48.48 Aligned_cols=58 Identities=29% Similarity=0.522 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHHHHHHHHHHHHh
Q psy11615 97 DLANLQKELERARQEQENAASEKIKLERRLQEHQALQGDASDLKSSSAFSDLEVCQLKQEIELLRNELQRAEG 169 (224)
Q Consensus 97 sl~dlQ~~Le~aqee~~~v~~EK~~LE~kl~~~~~ak~ea~rl~~~r~~sd~Els~l~eELe~vR~aL~~AE~ 169 (224)
||+||..+|..|=| ...=||.+|++....+.+.+||++ |++.|++|| .||..+..+++
T Consensus 1 SLeD~EsklN~AIE-------RnalLE~ELdEKE~L~~~~QRLkD-------E~RDLKqEl-~V~ek~~~~~~ 58 (166)
T PF04880_consen 1 SLEDFESKLNQAIE-------RNALLESELDEKENLREEVQRLKD-------ELRDLKQEL-IVQEKLRKANR 58 (166)
T ss_dssp HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHCH---------------------------------
T ss_pred CHHHHHHHHHHHHH-------HhHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHH-HHHHHhhhhhc
Confidence 68999999999877 334567777554567778889988 788889999 88887766543
No 5
>PRK11637 AmiB activator; Provisional
Probab=95.13 E-value=1.4 Score=41.52 Aligned_cols=73 Identities=11% Similarity=0.316 Sum_probs=33.7
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHhhhhhhchHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy11615 45 RNSTSHVKDYILGTLILIALTICWYVYRQKESSQQHLRRMMKDMEGLQRAELDLANLQKELERARQEQENAASEKIKLER 124 (224)
Q Consensus 45 Rer~~~wKDi~Lv~slviavgGcWfAy~Qnr~Sk~hl~~Mmkdle~Lq~AE~sl~dlQ~~Le~aqee~~~v~~EK~~LE~ 124 (224)
+|+.....-++++++|++++.++-| +-..-..+..+.+.-+ .+..+++++...+.+...+..+..+|++
T Consensus 14 ~~~~~~~~~~~~~~ll~~~~~~~~~-~~~~~~~~~~l~~l~~----------qi~~~~~~i~~~~~~~~~~~~~l~~l~~ 82 (428)
T PRK11637 14 KPRRFAIRPILYASVLSAGVLLCAF-SAHASDNRDQLKSIQQ----------DIAAKEKSVRQQQQQRASLLAQLKKQEE 82 (428)
T ss_pred cchhhhhhhHHHHHHHHHHHHHhhh-cccchhhHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555556667777666655555422 2222222333333322 3344444444444444444444445554
Q ss_pred HHHH
Q psy11615 125 RLQE 128 (224)
Q Consensus 125 kl~~ 128 (224)
++.+
T Consensus 83 qi~~ 86 (428)
T PRK11637 83 AISQ 86 (428)
T ss_pred HHHH
Confidence 4444
No 6
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=94.09 E-value=0.82 Score=46.05 Aligned_cols=78 Identities=14% Similarity=0.223 Sum_probs=48.9
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhh-hhchHHHHHHHHHhhHhH--------HHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy11615 51 VKDYILGTLILIALTICWYVYRQ-KESSQQHLRRMMKDMEGL--------QRAELDLANLQKELERARQEQENAASEKIK 121 (224)
Q Consensus 51 wKDi~Lv~slviavgGcWfAy~Q-nr~Sk~hl~~Mmkdle~L--------q~AE~sl~dlQ~~Le~aqee~~~v~~EK~~ 121 (224)
+.=..++++|++|+||.||..+| +..-+..|.+...+.+.+ ..++....+++.++.....+.......-+.
T Consensus 324 ~~~~~~~l~~~~~~g~~~~~~~q~~~~~~~~l~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~l~~le~~l~~~~~~~~~ 403 (656)
T PRK06975 324 AALWFVVVVLACAAAVGGYALNRKVDRLDQELVQRQQANDAQTAELRVKTEQAQASVHQLDSQFAQLDGKLADAQSAQQA 403 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33345566777777777664333 555555666655554333 235556777888888777777676666677
Q ss_pred HHHHHHH
Q psy11615 122 LERRLQE 128 (224)
Q Consensus 122 LE~kl~~ 128 (224)
|++.+.+
T Consensus 404 L~~~~~~ 410 (656)
T PRK06975 404 LEQQYQD 410 (656)
T ss_pred HHHHHHH
Confidence 7777765
No 7
>PF10828 DUF2570: Protein of unknown function (DUF2570); InterPro: IPR022538 This entry is represented by Bacteriophage IME08, pseT.3. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of proteins with unknown function.
Probab=94.02 E-value=2.4 Score=33.43 Aligned_cols=105 Identities=22% Similarity=0.292 Sum_probs=55.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhhhchHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy11615 50 HVKDYILGTLILIALTICWYVYRQKESSQQHLRRMMKDMEGLQRAELDLANLQKELERARQEQENAASEKIKLERRLQEH 129 (224)
Q Consensus 50 ~wKDi~Lv~slviavgGcWfAy~Qnr~Sk~hl~~Mmkdle~Lq~AE~sl~dlQ~~Le~aqee~~~v~~EK~~LE~kl~~~ 129 (224)
.|.-+.+++++|+..|.+|+.+.+ |.++-.+.+.+...=....+.-++|..+-.+++.+..+=+..|++++.
T Consensus 3 ~~~~~~l~~lvl~L~~~l~~qs~~-------i~~L~a~n~~q~~tI~qq~~~~~~L~~~~~~~r~~~~~~~~~~qq~r~- 74 (110)
T PF10828_consen 3 KYIYIALAVLVLGLGGWLWYQSQR-------IDRLRAENKAQAQTIQQQEDANQELKAQLQQNRQAVEEQQKREQQLRQ- 74 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 566777777766666667755432 455555555544444444444555555444455554443333333332
Q ss_pred hhhhcccccccccccchhHHHHHHHHHHHHHHHHHHHHHhhhhhcC--CCCChhhHHHHhhHH
Q psy11615 130 QALQGDASDLKSSSAFSDLEVCQLKQEIELLRNELQRAEGELEDRC--WAPPPGLQHWLQLTH 190 (224)
Q Consensus 130 ~~ak~ea~rl~~~r~~sd~Els~l~eELe~vR~aL~~AE~eLe~~~--ws~P~~LQ~wLQlT~ 190 (224)
+.+..|..++.|.. .+.| -.+|.+.---|+.-|
T Consensus 75 --------------------------~~e~~~e~ik~~lk--~d~Ca~~~~P~~V~d~L~~~~ 109 (110)
T PF10828_consen 75 --------------------------QSEERRESIKTALK--DDPCANTAVPDAVIDSLRRLH 109 (110)
T ss_pred --------------------------HHHHHHHHHHHHHc--cCccccCCCCHHHHHHHHHhh
Confidence 33444445555544 3445 446777666565544
No 8
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=93.83 E-value=2.2 Score=35.75 Aligned_cols=34 Identities=12% Similarity=0.131 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHhhhhhhchHHHHHHHHHhh
Q psy11615 55 ILGTLILIALTICWYVYRQKESSQQHLRRMMKDM 88 (224)
Q Consensus 55 ~Lv~slviavgGcWfAy~Qnr~Sk~hl~~Mmkdl 88 (224)
.+++++++||+|.||...++++.+.-+...-+.+
T Consensus 2 ~~i~l~~~a~~~~~~~~~~~~~l~~~~~~a~~~~ 35 (135)
T TIGR03495 2 LLIVLLGLLVAGLGWQSQRLRNARADLERANRVL 35 (135)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788888888888888887777666666555
No 9
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=93.46 E-value=2.3 Score=33.54 Aligned_cols=69 Identities=25% Similarity=0.479 Sum_probs=41.0
Q ss_pred HHHHhhhhhhchHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhcccccccccccc
Q psy11615 66 ICWYVYRQKESSQQHLRRMMKDMEGLQRAELDLANLQKELERARQEQENAASEKIKLERRLQEHQALQGDASDLKSSSAF 145 (224)
Q Consensus 66 GcWfAy~Qnr~Sk~hl~~Mmkdle~Lq~AE~sl~dlQ~~Le~aqee~~~v~~EK~~LE~kl~~~~~ak~ea~rl~~~r~~ 145 (224)
..|+...-.+.++..+..+..+++...+ |+.. +|.+++. + ++
T Consensus 22 ~~~~~l~~~~a~~~~~~~l~~~~~~~~~----------Rl~~--------------lE~~l~~-------------L-Pt 63 (106)
T PF10805_consen 22 IFWLWLRRTYAKREDIEKLEERLDEHDR----------RLQA--------------LETKLEH-------------L-PT 63 (106)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHHHH----------HHHH--------------HHHHHHh-------------C-CC
Confidence 3344344445556777776666654432 4443 4555544 2 33
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy11615 146 SDLEVCQLKQEIELLRNELQRAEGELED 173 (224)
Q Consensus 146 sd~Els~l~eELe~vR~aL~~AE~eLe~ 173 (224)
.+ ++.+|+-+|..+|+.++.-+..+..
T Consensus 64 ~~-dv~~L~l~l~el~G~~~~l~~~l~~ 90 (106)
T PF10805_consen 64 RD-DVHDLQLELAELRGELKELSARLQG 90 (106)
T ss_pred HH-HHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 44 6777878888888877777776653
No 10
>PRK09039 hypothetical protein; Validated
Probab=93.16 E-value=3 Score=38.93 Aligned_cols=25 Identities=36% Similarity=0.477 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhh
Q psy11615 149 EVCQLKQEIELLRNELQRAEGELED 173 (224)
Q Consensus 149 Els~l~eELe~vR~aL~~AE~eLe~ 173 (224)
.|.+|++||+.+|.+|...+.+|.+
T Consensus 138 ~V~~L~~qI~aLr~Qla~le~~L~~ 162 (343)
T PRK09039 138 QVELLNQQIAALRRQLAALEAALDA 162 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677889999999988888877754
No 11
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=92.92 E-value=4.8 Score=33.94 Aligned_cols=116 Identities=16% Similarity=0.208 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHhhhhh----hchHHHHHHHHHhhHhH-HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh--
Q psy11615 58 TLILIALTICWYVYRQK----ESSQQHLRRMMKDMEGL-QRAELDLANLQKELERARQEQENAASEKIKLERRLQEHQ-- 130 (224)
Q Consensus 58 ~slviavgGcWfAy~Qn----r~Sk~hl~~Mmkdle~L-q~AE~sl~dlQ~~Le~aqee~~~v~~EK~~LE~kl~~~~-- 130 (224)
-.+|+.++..||+|.== ..-+..|..-+.+.+.. ..|+..+.+.+++|+.|+.+......+-+.-=+++++.+
T Consensus 33 nflill~lL~~fl~kPI~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~L~~A~~ea~~ii~~A~~~ae~~~~~il~ 112 (184)
T CHL00019 33 NLSVVLGVLIYFGKGVLSDLLDNRKQTILNTIRNSEERREEAIEKLEKARARLRQAELEADEIRVNGYSEIEREKENLIN 112 (184)
T ss_pred HHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444455555211 11234566666666665 667777888888888888877776655544444444432
Q ss_pred hhhcccccccc-cccchhHHHHHHHHHH--HHHHHHHHHHHhhhhh
Q psy11615 131 ALQGDASDLKS-SSAFSDLEVCQLKQEI--ELLRNELQRAEGELED 173 (224)
Q Consensus 131 ~ak~ea~rl~~-~r~~sd~Els~l~eEL--e~vR~aL~~AE~eLe~ 173 (224)
.|+.++.++.. .+..-+.|..+...+| +....+...|++-|..
T Consensus 113 ~A~~ea~~~~~~a~~~ie~Ek~~a~~~l~~ei~~lav~~A~kil~~ 158 (184)
T CHL00019 113 QAKEDLERLENYKNETIRFEQQRAINQVRQQVFQLALQRALGTLNS 158 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 57777776664 3333333333333333 2334466677776654
No 12
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=92.81 E-value=4.6 Score=33.05 Aligned_cols=123 Identities=14% Similarity=0.110 Sum_probs=61.5
Q ss_pred chhHHHHHHHHHHHHHHHH-HHhh------hhhhchHHHHHHHHHhhHhH-HHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q psy11615 49 SHVKDYILGTLILIALTIC-WYVY------RQKESSQQHLRRMMKDMEGL-QRAELDLANLQKELERARQEQENAASEKI 120 (224)
Q Consensus 49 ~~wKDi~Lv~slviavgGc-WfAy------~Qnr~Sk~hl~~Mmkdle~L-q~AE~sl~dlQ~~Le~aqee~~~v~~EK~ 120 (224)
++|-=+.-++.++|.++.+ +|+| ...| +..|...+.+.+.. ..|+..+.+.+.+|+.|+.+-.....+-.
T Consensus 4 ~~~~~~~~~inF~il~~iL~~f~~kpi~~~l~~R--~~~I~~~l~~A~~~~~eA~~~~~e~~~~l~~a~~ea~~ii~~a~ 81 (159)
T PRK13461 4 NIPTIIATIINFIILLLILKHFFFDKIKAVIDSR--QSEIDNKIEKADEDQKKARELKLKNERELKNAKEEGKKIVEEYK 81 (159)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444445555555555 3333 2222 34556666666555 56777788888888888877555544322
Q ss_pred HHHHHHHHH-h-hhhcccccccc-cccchhHHHHHHHHHH--HHHHHHHHHHHhhhhh
Q psy11615 121 KLERRLQEH-Q-ALQGDASDLKS-SSAFSDLEVCQLKQEI--ELLRNELQRAEGELED 173 (224)
Q Consensus 121 ~LE~kl~~~-~-~ak~ea~rl~~-~r~~sd~Els~l~eEL--e~vR~aL~~AE~eLe~ 173 (224)
.-=++.+++ + .|+.++.++.. .+..-+.|..+...+| +.+.-++.-|++-|..
T Consensus 82 ~~a~~~~~~i~~~A~~ea~~~~~~a~~~i~~e~~~a~~~l~~ei~~lA~~~a~kil~~ 139 (159)
T PRK13461 82 SKAENVYEEIVKEAHEEADLIIERAKLEAQREKEKAEYEIKNQAVDLAVLLSSKALEE 139 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 222233332 2 46777776664 2222222222222222 2233356666665543
No 13
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=92.77 E-value=0.58 Score=41.79 Aligned_cols=52 Identities=31% Similarity=0.426 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHHHHHHHHHHHHhhh
Q psy11615 117 SEKIKLERRLQEHQALQGDASDLKSSSAFSDLEVCQLKQEIELLRNELQRAEGEL 171 (224)
Q Consensus 117 ~EK~~LE~kl~~~~~ak~ea~rl~~~r~~sd~Els~l~eELe~vR~aL~~AE~eL 171 (224)
.||..|+.++.+ +..++.+|..-..-.+-|..+|..++..+|.++.+|..+|
T Consensus 75 eEk~~Le~e~~e---~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~~~~~ak~~L 126 (246)
T PF00769_consen 75 EEKEQLEQELRE---AEAEIARLEEESERKEEEAEELQEELEEAREDEEEAKEEL 126 (246)
T ss_dssp ------HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444 5555566665445556677778888999999999887776
No 14
>PF04375 HemX: HemX; InterPro: IPR007470 The majority of proteins in this family are annotated as uroporphyrin-III C-methyltransferase (2.1.1.107 from EC) []; however, there is no direct evidence to support this annotation for these proteins, which come from mainly pathogenic Gram-negative organisms. There is some evidence to suggest that the proteins are membrane anchored as they have a predicted N-terminal signal peptide and transmembrane domain and may be involved in haem transport [].
Probab=92.47 E-value=3.8 Score=38.50 Aligned_cols=32 Identities=19% Similarity=0.312 Sum_probs=18.0
Q ss_pred HHHHHHHHhhhhhhchHHHHHHHHHhhHhHHH
Q psy11615 62 IALTICWYVYRQKESSQQHLRRMMKDMEGLQR 93 (224)
Q Consensus 62 iavgGcWfAy~Qnr~Sk~hl~~Mmkdle~Lq~ 93 (224)
+|+||.||...|....+..+..+...+..+..
T Consensus 43 lg~~~~~~~~~q~~~~~~~~~~L~~ql~~~~~ 74 (372)
T PF04375_consen 43 LGAGGWYWQQQQLQQLQQQLQALQQQLQQLQQ 74 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445445555556666677666666643
No 15
>PRK10780 periplasmic chaperone; Provisional
Probab=92.40 E-value=4.5 Score=33.59 Aligned_cols=49 Identities=10% Similarity=0.121 Sum_probs=38.0
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhhchHHHHHHHHHhhHhHHHHHHHHH
Q psy11615 51 VKDYILGTLILIALTICWYVYRQKESSQQHLRRMMKDMEGLQRAELDLA 99 (224)
Q Consensus 51 wKDi~Lv~slviavgGcWfAy~Qnr~Sk~hl~~Mmkdle~Lq~AE~sl~ 99 (224)
||-|++++++.+++.|.+.|..+.|-.-..+.+.+..+..-+.+...|+
T Consensus 1 Mkk~~~~~~l~l~~~~~~~a~a~~KIg~Vd~q~il~~~p~~k~~~~~le 49 (165)
T PRK10780 1 MKKWLLAAGLGLALATSAGAQAADKIAIVNMGSIFQQVPQRTGVSKQLE 49 (165)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHhcCeEEeeHHHHHHHCHHHHHHHHHHH
Confidence 4567777777777778888888889999999999998888777655443
No 16
>TIGR01144 ATP_synt_b ATP synthase, F0 subunit b. This model describes the F1/F0 ATP synthase b subunit in bacteria only. Scoring just below the trusted cutoff are the N-terminal domains of Mycobacterial b/delta fusion proteins and a subunit from an archaeon, Methanosarcina barkeri, in which the ATP synthase homolog differs in architecture and is not experimentally confirmed. This model helps resolve b from the related b' subunit. Within the family is an example from a sodium-translocating rather than proton-translocating ATP synthase.
Probab=92.01 E-value=5.4 Score=31.95 Aligned_cols=82 Identities=15% Similarity=0.184 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHh-----hhhhhchHHHHHHHHHhhHhH-HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Q psy11615 57 GTLILIALTICWYV-----YRQKESSQQHLRRMMKDMEGL-QRAELDLANLQKELERARQEQENAASEKIKLERRLQEHQ 130 (224)
Q Consensus 57 v~slviavgGcWfA-----y~Qnr~Sk~hl~~Mmkdle~L-q~AE~sl~dlQ~~Le~aqee~~~v~~EK~~LE~kl~~~~ 130 (224)
.|+|+++|.+.|++ +..+| +..|...+.+.+.. ..|+..+.+.+++|+.|+.+-..-..+-..-=.++.+++
T Consensus 4 ~Flil~~il~~~~~~pi~~~l~~R--~~~I~~~l~~A~~~~~ea~~~~~e~~~~l~~A~~ea~~i~~~a~~~a~~~~~~~ 81 (147)
T TIGR01144 4 SFILLVWFCMKYVWPPLAKAIETR--QKKIADGLASAERAKKEAALAQKKAQVILKEAKDEAQEIIENANKRGSEILEEA 81 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555543 22222 44566667776666 667777888888888888765554433322223333322
Q ss_pred --hhhccccccc
Q psy11615 131 --ALQGDASDLK 140 (224)
Q Consensus 131 --~ak~ea~rl~ 140 (224)
.++.++.++-
T Consensus 82 ~~~a~~e~~~~~ 93 (147)
T TIGR01144 82 KAEAREEREKIK 93 (147)
T ss_pred HHHHHHHHHHHH
Confidence 3555555444
No 17
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=91.57 E-value=7.5 Score=33.49 Aligned_cols=17 Identities=18% Similarity=0.309 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHhh
Q psy11615 55 ILGTLILIALTICWYVY 71 (224)
Q Consensus 55 ~Lv~slviavgGcWfAy 71 (224)
..++++++|+|++||..
T Consensus 5 ~~i~~~~vG~~~G~~~~ 21 (201)
T PF12072_consen 5 IAIVALIVGIGIGYLVR 21 (201)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34455555555555553
No 18
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=91.24 E-value=6 Score=33.19 Aligned_cols=64 Identities=14% Similarity=0.194 Sum_probs=39.8
Q ss_pred HHHHHHHHHhhHhH-HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh--hhhcccccccc
Q psy11615 78 QQHLRRMMKDMEGL-QRAELDLANLQKELERARQEQENAASEKIKLERRLQEHQ--ALQGDASDLKS 141 (224)
Q Consensus 78 k~hl~~Mmkdle~L-q~AE~sl~dlQ~~Le~aqee~~~v~~EK~~LE~kl~~~~--~ak~ea~rl~~ 141 (224)
+..|..-+.+.+.. ..|+..+.+.++.|..|+.+-.....+-..-=++.++.+ .++.++.++..
T Consensus 55 ~~~I~~~l~~Ae~~~~ea~~~~~e~e~~L~~Ar~eA~~Ii~~A~~eAe~~~~~ii~~A~~ea~~~~~ 121 (167)
T PRK08475 55 INKISKRLEEIQEKLKESKEKKEDALKKLEEAKEKAELIVETAKKEAYILTQKIEKQTKDDIENLIK 121 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666665 667777777788888887776666555444444444432 46666666554
No 19
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=90.79 E-value=5 Score=34.93 Aligned_cols=41 Identities=17% Similarity=0.233 Sum_probs=28.4
Q ss_pred HHHHHHHHHhhHhH-HHHHHHHHHHHHHHHHHHHHhHHHHHH
Q psy11615 78 QQHLRRMMKDMEGL-QRAELDLANLQKELERARQEQENAASE 118 (224)
Q Consensus 78 k~hl~~Mmkdle~L-q~AE~sl~dlQ~~Le~aqee~~~v~~E 118 (224)
+..|...+.+.+.. ..|+..+.+.+++|++|+.+-.....+
T Consensus 81 ~~~I~~~L~~Ae~~~~eA~~~l~e~e~~L~~A~~eA~~Ii~~ 122 (205)
T PRK06231 81 KELIEAEINQANELKQQAQQLLENAKQRHENALAQAKEIIDQ 122 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666676666 667777888888888888766555443
No 20
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=90.35 E-value=1.3 Score=33.00 Aligned_cols=55 Identities=35% Similarity=0.339 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhcCCCCChhhHHHHhhHHHHHHHHHHHhHhhHHHHHHHHHHHHHhhcccc
Q psy11615 152 QLKQEIELLRNELQRAEGELEDRCWAPPPGLQHWLQLTHEIENKAYVKKKLMAEKQLQQAREARFDRGKCI 222 (224)
Q Consensus 152 ~l~eELe~vR~aL~~AE~eLe~~~ws~P~~LQ~wLQlT~EvE~q~y~~Kk~~AekQL~~AkE~~EKikK~~ 222 (224)
+|+.++..+|.-|..|.+.++. |+.+++..+.-|-.+..+|..|.+.|.+|+-.+
T Consensus 2 ~Lea~~~~Lr~rLd~~~rk~~~----------------~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~ 56 (69)
T PF14197_consen 2 KLEAEIATLRNRLDSLTRKNSV----------------HEIENKRLRRERDSAERQLGDAYEENNKLKEEN 56 (69)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4778999999999999998875 789999999999999999999999999987543
No 21
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=90.20 E-value=9.9 Score=31.74 Aligned_cols=64 Identities=14% Similarity=0.209 Sum_probs=36.1
Q ss_pred HHHHHHHHHhhHhH-HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH-h-hhhcccccccc
Q psy11615 78 QQHLRRMMKDMEGL-QRAELDLANLQKELERARQEQENAASEKIKLERRLQEH-Q-ALQGDASDLKS 141 (224)
Q Consensus 78 k~hl~~Mmkdle~L-q~AE~sl~dlQ~~Le~aqee~~~v~~EK~~LE~kl~~~-~-~ak~ea~rl~~ 141 (224)
+..|...+.+.+.. ..|+..+.+.+.+|+.|+.+-.....+-..-=++.+++ + .|+.++.++..
T Consensus 51 ~~~I~~~l~~Ae~~~~eA~~~~~e~e~~L~~a~~ea~~ii~~A~~~a~~~~~~~~~~A~~ea~~~~~ 117 (175)
T PRK14472 51 EKGIQSSIDRAHSAKDEAEAILRKNRELLAKADAEADKIIREGKEYAEKLRAEITEKAHTEAKKMIA 117 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666665 56666777777777777776655544332222333332 2 46666665553
No 22
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=89.62 E-value=14 Score=33.09 Aligned_cols=96 Identities=13% Similarity=0.135 Sum_probs=50.4
Q ss_pred HHHHHHHHHhhHhH-HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH-h-hhhcccccccc-cccchhHHHHHH
Q psy11615 78 QQHLRRMMKDMEGL-QRAELDLANLQKELERARQEQENAASEKIKLERRLQEH-Q-ALQGDASDLKS-SSAFSDLEVCQL 153 (224)
Q Consensus 78 k~hl~~Mmkdle~L-q~AE~sl~dlQ~~Le~aqee~~~v~~EK~~LE~kl~~~-~-~ak~ea~rl~~-~r~~sd~Els~l 153 (224)
+..|...+.+-+.. ..|++.+.+.+++++.++.+......+-..-=++.+++ + .|+.++.+++. .+..-+.|..+.
T Consensus 38 ~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~ii~~A~~eA~~~~~~il~~A~~ea~~~~~~a~~~ie~Ek~~a 117 (250)
T PRK14474 38 QQRIANRWQDAEQRQQEAGQEAERYRQKQQSLEQQRASFMAQAQEAADEQRQHLLNEAREDVATARDEWLEQLEREKQEF 117 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666655 56667777777777777766555433322222333332 2 57777777775 323333333333
Q ss_pred HHHH--HHHHHHHHHHHhhhhh
Q psy11615 154 KQEI--ELLRNELQRAEGELED 173 (224)
Q Consensus 154 ~eEL--e~vR~aL~~AE~eLe~ 173 (224)
..+| +....++.-|++-|.+
T Consensus 118 ~~~L~~~v~~la~~~A~kiL~~ 139 (250)
T PRK14474 118 FKALQQQTGQQMVKIIRAALAD 139 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 2333 2233466666665543
No 23
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=89.18 E-value=3.2 Score=32.57 Aligned_cols=24 Identities=21% Similarity=0.310 Sum_probs=14.7
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHH
Q psy11615 105 LERARQEQENAASEKIKLERRLQE 128 (224)
Q Consensus 105 Le~aqee~~~v~~EK~~LE~kl~~ 128 (224)
.++.++|++...+||.--|.+++.
T Consensus 32 ~~kL~~en~qlk~Ek~~~~~qvkn 55 (87)
T PF10883_consen 32 NAKLQKENEQLKTEKAVAETQVKN 55 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555666666666666666665
No 24
>PRK11637 AmiB activator; Provisional
Probab=88.36 E-value=7.7 Score=36.62 Aligned_cols=35 Identities=11% Similarity=0.259 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy11615 94 AELDLANLQKELERARQEQENAASEKIKLERRLQE 128 (224)
Q Consensus 94 AE~sl~dlQ~~Le~aqee~~~v~~EK~~LE~kl~~ 128 (224)
.++.+.+++++++..+.+...+..+..+++.++.+
T Consensus 45 ~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~ 79 (428)
T PRK11637 45 NRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKK 79 (428)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555555555544
No 25
>PF14584 DUF4446: Protein of unknown function (DUF4446)
Probab=88.11 E-value=4.2 Score=34.29 Aligned_cols=74 Identities=19% Similarity=0.250 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhchHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy11615 54 YILGTLILIALTICWYVYRQKESSQQHLRRMMKDMEGLQRAELDLANLQKELERARQEQENAASEKIKLERRLQE 128 (224)
Q Consensus 54 i~Lv~slviavgGcWfAy~Qnr~Sk~hl~~Mmkdle~Lq~AE~sl~dlQ~~Le~aqee~~~v~~EK~~LE~kl~~ 128 (224)
+.+++++|++++.+.+.+..-++-+..-..+|+..++- .-|.-|.+...+++..+++......+=..++.+++.
T Consensus 5 i~l~~l~iilli~~~~~~~kl~kl~r~Y~~lm~g~~~~-~lE~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 78 (151)
T PF14584_consen 5 IGLLVLVIILLILIIILNIKLRKLKRRYDALMRGKDGK-NLEDLLNELFDQIDELKEELEELEKRIEELEEKLRN 78 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44556667777777777777777888888898877664 557778888888888888777777777777777765
No 26
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=88.10 E-value=14 Score=30.77 Aligned_cols=95 Identities=21% Similarity=0.263 Sum_probs=49.6
Q ss_pred HHHHHHHHhhHhH-HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH-h-hhhcccccccc-cccchhHHHHHHH
Q psy11615 79 QHLRRMMKDMEGL-QRAELDLANLQKELERARQEQENAASEKIKLERRLQEH-Q-ALQGDASDLKS-SSAFSDLEVCQLK 154 (224)
Q Consensus 79 ~hl~~Mmkdle~L-q~AE~sl~dlQ~~Le~aqee~~~v~~EK~~LE~kl~~~-~-~ak~ea~rl~~-~r~~sd~Els~l~ 154 (224)
..|...+.+.+.+ ..|+..+.+.+++|+.|+.+-..-..+-..-=++++++ . .++.++.++.. .+..-+.|..+..
T Consensus 53 ~~I~~~l~~A~~~~~ea~~~~~~~~~~L~~a~~ea~~ii~~a~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e~~~a~ 132 (174)
T PRK07352 53 EAILQALKEAEERLRQAAQALAEAQQKLAQAQQEAERIRADAKARAEAIRAEIEKQAIEDMARLKQTAAADLSAEQERVI 132 (174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555 56677778888888888776655544333222333332 2 46666666554 2222222333322
Q ss_pred HHH--HHHHHHHHHHHhhhhh
Q psy11615 155 QEI--ELLRNELQRAEGELED 173 (224)
Q Consensus 155 eEL--e~vR~aL~~AE~eLe~ 173 (224)
.+| +.+..++..|++-|..
T Consensus 133 ~~l~~qi~~la~~~A~kil~~ 153 (174)
T PRK07352 133 AQLRREAAELAIAKAESQLPG 153 (174)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 333 2233466677776654
No 27
>PRK10884 SH3 domain-containing protein; Provisional
Probab=87.90 E-value=3.8 Score=36.13 Aligned_cols=72 Identities=14% Similarity=0.237 Sum_probs=39.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHHHHHHHHHHHH
Q psy11615 89 EGLQRAELDLANLQKELERARQEQENAASEKIKLERRLQEHQALQGDASDLKSSSAFSDLEVCQLKQEIELLRNELQRAE 168 (224)
Q Consensus 89 e~Lq~AE~sl~dlQ~~Le~aqee~~~v~~EK~~LE~kl~~~~~ak~ea~rl~~~r~~sd~Els~l~eELe~vR~aL~~AE 168 (224)
+.|...|+.+.+++.+|..++.+.. .++..+.+++.+ +......| +.+.++|++||..++..+..++
T Consensus 93 ~rlp~le~el~~l~~~l~~~~~~~~---~~~~~l~~~~~~---~~~~~~~L-------~~~n~~L~~~l~~~~~~~~~l~ 159 (206)
T PRK10884 93 TRVPDLENQVKTLTDKLNNIDNTWN---QRTAEMQQKVAQ---SDSVINGL-------KEENQKLKNQLIVAQKKVDAAN 159 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHH---HHHHHHHHHHHH---HHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666777777777777665433 222333333332 11111112 2355666777777777777776
Q ss_pred hhhhh
Q psy11615 169 GELED 173 (224)
Q Consensus 169 ~eLe~ 173 (224)
.++.+
T Consensus 160 ~~~~~ 164 (206)
T PRK10884 160 LQLDD 164 (206)
T ss_pred HHHHH
Confidence 66654
No 28
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=87.54 E-value=4.5 Score=40.16 Aligned_cols=40 Identities=20% Similarity=0.325 Sum_probs=23.5
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy11615 89 EGLQRAELDLANLQKELERARQEQENAASEKIKLERRLQE 128 (224)
Q Consensus 89 e~Lq~AE~sl~dlQ~~Le~aqee~~~v~~EK~~LE~kl~~ 128 (224)
..|.-++....+|+++|+..+.|-+......+++|+++++
T Consensus 69 SALteqQ~kasELEKqLaaLrqElq~~saq~~dle~KIke 108 (475)
T PRK13729 69 HATTEMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEK 108 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHH
Confidence 3445555567777777777765555444555555555543
No 29
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=87.45 E-value=5.6 Score=36.55 Aligned_cols=22 Identities=27% Similarity=0.241 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhh
Q psy11615 151 CQLKQEIELLRNELQRAEGELE 172 (224)
Q Consensus 151 s~l~eELe~vR~aL~~AE~eLe 172 (224)
..++++...+..++..|++-++
T Consensus 247 ~~~~~~k~~l~~eI~e~~~~~~ 268 (325)
T PF08317_consen 247 EELEEQKQELLAEIAEAEKIRE 268 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334455555555555555554
No 30
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=86.92 E-value=21 Score=31.49 Aligned_cols=96 Identities=14% Similarity=0.147 Sum_probs=51.6
Q ss_pred HHHHHHHHHhhHhH-HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH-h-hhhcccccccc-cccchhHHHHHH
Q psy11615 78 QQHLRRMMKDMEGL-QRAELDLANLQKELERARQEQENAASEKIKLERRLQEH-Q-ALQGDASDLKS-SSAFSDLEVCQL 153 (224)
Q Consensus 78 k~hl~~Mmkdle~L-q~AE~sl~dlQ~~Le~aqee~~~v~~EK~~LE~kl~~~-~-~ak~ea~rl~~-~r~~sd~Els~l 153 (224)
+..|...+.+-+.. +.|+..+.+.+.+|+.|+.+...-..+-..-=++.++. + .|+.++.++.. .+..-+.|..+.
T Consensus 38 ~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~i~~~A~~eA~~~~~~i~~~A~~ea~~~~~~a~~~ie~E~~~a 117 (246)
T TIGR03321 38 EKKIAGELADADTKKREAEQERREYEEKNEELDQQREVLLTKAKEEAQAERQRLLDEAREEADEIREKWQEALRREQAAL 117 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666 45777777777788877776655544322222333332 2 57777777664 333333333333
Q ss_pred HHHH--HHHHHHHHHHHhhhhh
Q psy11615 154 KQEI--ELLRNELQRAEGELED 173 (224)
Q Consensus 154 ~eEL--e~vR~aL~~AE~eLe~ 173 (224)
.++| +.+..++..|++-|..
T Consensus 118 ~~~l~~ei~~la~~~A~kil~~ 139 (246)
T TIGR03321 118 SDELRRRTGAEVFAIARKVLTD 139 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 2222 2233466667765543
No 31
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=86.80 E-value=18 Score=30.47 Aligned_cols=41 Identities=12% Similarity=0.306 Sum_probs=30.1
Q ss_pred HHHHHHHHHhhHhH-HHHHHHHHHHHHHHHHHHHHhHHHHHH
Q psy11615 78 QQHLRRMMKDMEGL-QRAELDLANLQKELERARQEQENAASE 118 (224)
Q Consensus 78 k~hl~~Mmkdle~L-q~AE~sl~dlQ~~Le~aqee~~~v~~E 118 (224)
+..|...+.|-+.+ ..|+..+.+.+++|+.|+.+-+....+
T Consensus 60 ~~~I~~~l~~Ae~~~~eA~~~l~e~e~~L~~A~~ea~~Ii~~ 101 (184)
T PRK13455 60 AEGIRSELEEARALREEAQTLLASYERKQREVQEQADRIVAA 101 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777 778888888888888888776655443
No 32
>PF06210 DUF1003: Protein of unknown function (DUF1003); InterPro: IPR010406 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=86.74 E-value=7.8 Score=31.10 Aligned_cols=65 Identities=15% Similarity=0.120 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhchHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q psy11615 54 YILGTLILIALTICWYVYRQKESSQQHLRRMMKDMEGLQRAELDLANLQKELERARQEQENAASE 118 (224)
Q Consensus 54 i~Lv~slviavgGcWfAy~Qnr~Sk~hl~~Mmkdle~Lq~AE~sl~dlQ~~Le~aqee~~~v~~E 118 (224)
+-+++|++-++-.-..-..|||-+...=.+.-.|.+--.+||...+++..++..-.+.......+
T Consensus 38 Lnl~lS~~Aa~~ap~IlmsQNRq~~~dr~ra~~D~~inl~ae~ei~~l~~~l~~l~~~~~~~~~~ 102 (108)
T PF06210_consen 38 LNLVLSLEAAYQAPLILMSQNRQAARDRLRAELDYQINLKAEQEIERLHRKLDALREKLGELLER 102 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 44677777788888888999999999999999999999999999999999999988877666654
No 33
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=86.32 E-value=44 Score=36.80 Aligned_cols=145 Identities=17% Similarity=0.185 Sum_probs=67.1
Q ss_pred chhHHHHHHHHHHHHHHHHHHhhhhhhchHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy11615 49 SHVKDYILGTLILIALTICWYVYRQKESSQQHLRRMMKDMEGLQRAELDLANLQKELERARQEQENAASEKIKLERRLQE 128 (224)
Q Consensus 49 ~~wKDi~Lv~slviavgGcWfAy~Qnr~Sk~hl~~Mmkdle~Lq~AE~sl~dlQ~~Le~aqee~~~v~~EK~~LE~kl~~ 128 (224)
....++.-.+-.+-.|.++|=.|.+.. .......+...-..+..+...+.++..+++.++++......+...||+++..
T Consensus 237 ~~le~l~~~~~~l~~i~~~y~~y~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~ 315 (1353)
T TIGR02680 237 DELERLEALERALRNFLQRYRRYARTM-LRRRATRLRSAQTQYDQLSRDLGRARDELETAREEERELDARTEALEREADA 315 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666677777888888888887632 2333344444434444444444444444444444444444444444443333
Q ss_pred Hhhhhcccccccccccch-hHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCChhhHHHHhhHHHHHHHHHHHhH
Q psy11615 129 HQALQGDASDLKSSSAFS-DLEVCQLKQEIELLRNELQRAEGELEDRCWAPPPGLQHWLQLTHEIENKAYVKKK 201 (224)
Q Consensus 129 ~~~ak~ea~rl~~~r~~s-d~Els~l~eELe~vR~aL~~AE~eLe~~~ws~P~~LQ~wLQlT~EvE~q~y~~Kk 201 (224)
.+.+...|+.+..+. -.++.++++++.++...+..++..+... ...+.+.-+-..+.+-..|...+
T Consensus 316 ---l~~~~~~l~~~~a~~~~~eL~el~~ql~~~~~~a~~~~~~~~~a----~~~~e~~~~~~~~~~~r~~~~~~ 382 (1353)
T TIGR02680 316 ---LRTRLEALQGSPAYQDAEELERARADAEALQAAAADARQAIREA----ESRLEEERRRLDEEAGRLDDAER 382 (1353)
T ss_pred ---HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 222223333322211 1133344455555555555555444321 33344444444444444444433
No 34
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=86.25 E-value=25 Score=32.99 Aligned_cols=70 Identities=20% Similarity=0.374 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHhhhhhhc-----------hHHHHHHHHHhhHhHH------HHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy11615 59 LILIALTICWYVYRQKES-----------SQQHLRRMMKDMEGLQ------RAELDLANLQKELERARQEQENAASEKIK 121 (224)
Q Consensus 59 slviavgGcWfAy~Qnr~-----------Sk~hl~~Mmkdle~Lq------~AE~sl~dlQ~~Le~aqee~~~v~~EK~~ 121 (224)
.+|+..+|.||++.||-- +=..|+.=|++|...+ +++.|+.+.++.+++.+.+-.++..+-.+
T Consensus 27 Gl~ml~AgA~Y~~yQ~~EQAr~~A~~fA~~ld~~~~kl~~Ms~~ql~~~~~k~~~si~~q~~~i~~l~~~i~~l~~~i~~ 106 (301)
T PF06120_consen 27 GLVMLGAGAWYYFYQNAEQARQEAIEFADSLDELKEKLKEMSSTQLRANIAKAEESIAAQKRAIEDLQKKIDSLKDQIKN 106 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555788999988742 1223445566665543 56777888888888888877777666666
Q ss_pred HHHHHHH
Q psy11615 122 LERRLQE 128 (224)
Q Consensus 122 LE~kl~~ 128 (224)
++..+.+
T Consensus 107 y~~~~~~ 113 (301)
T PF06120_consen 107 YQQQLAE 113 (301)
T ss_pred HHHHHhc
Confidence 6665554
No 35
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=86.23 E-value=18 Score=30.02 Aligned_cols=7 Identities=0% Similarity=-0.415 Sum_probs=2.6
Q ss_pred HHHHHHh
Q psy11615 64 LTICWYV 70 (224)
Q Consensus 64 vgGcWfA 70 (224)
++|.-+.
T Consensus 54 ~~g~~~~ 60 (191)
T PF04156_consen 54 SLGLLCL 60 (191)
T ss_pred HHHHHHH
Confidence 3333333
No 36
>PRK09173 F0F1 ATP synthase subunit B; Validated
Probab=86.13 E-value=16 Score=29.87 Aligned_cols=41 Identities=17% Similarity=0.303 Sum_probs=30.3
Q ss_pred HHHHHHHHHhhHhH-HHHHHHHHHHHHHHHHHHHHhHHHHHH
Q psy11615 78 QQHLRRMMKDMEGL-QRAELDLANLQKELERARQEQENAASE 118 (224)
Q Consensus 78 k~hl~~Mmkdle~L-q~AE~sl~dlQ~~Le~aqee~~~v~~E 118 (224)
+..|...+.+-+.+ ..|+..+.+.+.+|+.|+.+-.....+
T Consensus 35 ~~~I~~~l~~Ae~~~~eA~~~~~~~e~~L~~A~~ea~~ii~~ 76 (159)
T PRK09173 35 ADRIKNELAEARRLREEAQQLLAEYQRKRKEAEKEAADIVAA 76 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777 778888888888888888776665443
No 37
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=85.99 E-value=19 Score=29.99 Aligned_cols=97 Identities=12% Similarity=0.135 Sum_probs=56.4
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHHhhh--hh--hchHHHHHHHHHhhHhH-HHHHHHHHHHHHHHHHHHHHhHHHHHH
Q psy11615 44 DRNSTSHVKDYILGTLILIALTICWYVYR--QK--ESSQQHLRRMMKDMEGL-QRAELDLANLQKELERARQEQENAASE 118 (224)
Q Consensus 44 DRer~~~wKDi~Lv~slviavgGcWfAy~--Qn--r~Sk~hl~~Mmkdle~L-q~AE~sl~dlQ~~Le~aqee~~~v~~E 118 (224)
|.+...+|.=+.+++++++.+.. .|+|. .+ ..-+..|...+.+-+.. ..|+..+.+.+++|+.|+.+-..-..+
T Consensus 6 ~~~~~~~w~~i~f~il~~iL~~~-k~l~~pi~~~le~R~~~I~~~l~~Ae~~k~eAe~~~~~~e~~L~~A~~ea~~Ii~~ 84 (167)
T PRK14475 6 NLSNPEFWVGAGLLIFFGILIAL-KVLPKALAGALDAYAAKIQAELDEAQRLREEAQALLADVKAEREEAERQAAAMLAA 84 (167)
T ss_pred CCCchHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44456789766666665554422 33331 11 12245677778888777 778888899999999988876665443
Q ss_pred HHHHHHHHHHHh--hhhcccccccc
Q psy11615 119 KIKLERRLQEHQ--ALQGDASDLKS 141 (224)
Q Consensus 119 K~~LE~kl~~~~--~ak~ea~rl~~ 141 (224)
-..-=++..+++ .++.++.++..
T Consensus 85 A~~~a~~~~~~~~~~A~~ea~~~~~ 109 (167)
T PRK14475 85 AKADARRMEAEAKEKLEEQIKRRAE 109 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222233322 35556665553
No 38
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=85.57 E-value=3.1 Score=33.80 Aligned_cols=48 Identities=13% Similarity=0.176 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHhhhhhhchHHHHHHHHHhhHhHHHHHHHHHHHHHHHHH
Q psy11615 56 LGTLILIALTICWYVYRQKESSQQHLRRMMKDMEGLQRAELDLANLQKELER 107 (224)
Q Consensus 56 Lv~slviavgGcWfAy~Qnr~Sk~hl~~Mmkdle~Lq~AE~sl~dlQ~~Le~ 107 (224)
++.+||++|+|+++...=+++. .+..++-+.|+ .++..|.+-+.++..
T Consensus 3 ~i~lvvG~iiG~~~~r~~~~~~-~~q~~l~~eL~---~~k~el~~yk~~V~~ 50 (128)
T PF06295_consen 3 IIGLVVGLIIGFLIGRLTSSNQ-QKQAKLEQELE---QAKQELEQYKQEVND 50 (128)
T ss_pred HHHHHHHHHHHHHHHHHhccch-hhHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 4444444445555444433333 33344444443 455556655555554
No 39
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=84.96 E-value=22 Score=29.83 Aligned_cols=63 Identities=16% Similarity=0.172 Sum_probs=34.9
Q ss_pred HHHHHHHHHhhHhH-HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH-h-hhhccccccc
Q psy11615 78 QQHLRRMMKDMEGL-QRAELDLANLQKELERARQEQENAASEKIKLERRLQEH-Q-ALQGDASDLK 140 (224)
Q Consensus 78 k~hl~~Mmkdle~L-q~AE~sl~dlQ~~Le~aqee~~~v~~EK~~LE~kl~~~-~-~ak~ea~rl~ 140 (224)
+..|...+.+.+.. ..|+..+.+.+++|..|+.+-.....+-..-=+++++. + .++.++.++.
T Consensus 51 ~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~ii~~a~~~a~~~~~~~~~~A~~ea~~~~ 116 (173)
T PRK13453 51 ERDINRDIDDAEQAKLNAQKLEEENKQKLKETQEEVQKILEDAKVQARQQQEQIIHEANVRANGMI 116 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666555 56677777777778777776655544322222223332 2 4666666554
No 40
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=84.09 E-value=28 Score=30.40 Aligned_cols=65 Identities=17% Similarity=0.220 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcCCCCChhhHHHH---hhHHHHHHHHHHHhHhhHHHHHHHHHHHHHhhcccc
Q psy11615 150 VCQLKQEIELLRNELQRAEGELEDRCWAPPPGLQHWL---QLTHEIENKAYVKKKLMAEKQLQQAREARFDRGKCI 222 (224)
Q Consensus 150 ls~l~eELe~vR~aL~~AE~eLe~~~ws~P~~LQ~wL---QlT~EvE~q~y~~Kk~~AekQL~~AkE~~EKikK~~ 222 (224)
...|..+|+.+...+..+++.+.. |.+=| .-+|--++...+.|-..|...+..+.+.++.+..+|
T Consensus 120 ReeL~~kL~~~~~~l~~~~~ki~~--------Lek~leL~~k~~~rql~~e~kK~~~~~~~~~~l~~ei~~L~~kl 187 (194)
T PF15619_consen 120 REELQRKLSQLEQKLQEKEKKIQE--------LEKQLELENKSFRRQLASEKKKHKEAQEEVKSLQEEIQRLNQKL 187 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344567888888888888876654 33323 335667777888899999999999999999988765
No 41
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=83.51 E-value=20 Score=28.37 Aligned_cols=38 Identities=18% Similarity=0.215 Sum_probs=25.7
Q ss_pred HHHHHHHHHhhHhH-HHHHHHHHHHHHHHHHHHHHhHHH
Q psy11615 78 QQHLRRMMKDMEGL-QRAELDLANLQKELERARQEQENA 115 (224)
Q Consensus 78 k~hl~~Mmkdle~L-q~AE~sl~dlQ~~Le~aqee~~~v 115 (224)
+..|...+.+-+.+ ..|+..+.+.+++|+.|+.+-..-
T Consensus 38 ~~~I~~~l~~Ae~~~~ea~~~~~~~e~~L~~a~~ea~~i 76 (140)
T PRK07353 38 EDYIRTNRAEAKERLAEAEKLEAQYEQQLASARKQAQAV 76 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666 667777777777777777765444
No 42
>PRK12704 phosphodiesterase; Provisional
Probab=83.30 E-value=32 Score=34.17 Aligned_cols=16 Identities=25% Similarity=0.214 Sum_probs=8.5
Q ss_pred HHHHHHHHHHhhcccc
Q psy11615 207 QLQQAREARFDRGKCI 222 (224)
Q Consensus 207 QL~~AkE~~EKikK~~ 222 (224)
....|++.|++.-+.|
T Consensus 178 ~~~~~~~~a~~~a~~i 193 (520)
T PRK12704 178 IEEEAKEEADKKAKEI 193 (520)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3445666666654443
No 43
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=82.99 E-value=26 Score=29.22 Aligned_cols=64 Identities=16% Similarity=0.187 Sum_probs=37.6
Q ss_pred HHHHHHHHHhhHhH-HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh--hhhcccccccc
Q psy11615 78 QQHLRRMMKDMEGL-QRAELDLANLQKELERARQEQENAASEKIKLERRLQEHQ--ALQGDASDLKS 141 (224)
Q Consensus 78 k~hl~~Mmkdle~L-q~AE~sl~dlQ~~Le~aqee~~~v~~EK~~LE~kl~~~~--~ak~ea~rl~~ 141 (224)
+..|..-+.+.+.+ ..|+..+.+.+++|+.|+.+-.....+-..-=+++++++ .++.++.++..
T Consensus 49 ~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~ii~~A~~ea~~~~~~~~~~A~~ea~~~~~ 115 (173)
T PRK13460 49 ASGVQNDINKASELRLEAEALLKDYEARLNSAKDEANAIVAEAKSDALKLKNKLLEETNNEVKAQKD 115 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666 567777888888888887766655443222223333332 46666665554
No 44
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=82.80 E-value=26 Score=29.07 Aligned_cols=27 Identities=26% Similarity=0.405 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHH
Q psy11615 91 LQRAELDLANLQKELERARQEQENAAS 117 (224)
Q Consensus 91 Lq~AE~sl~dlQ~~Le~aqee~~~v~~ 117 (224)
+...++-+..+++++..-++...+...
T Consensus 83 ~~~~~~~l~~l~~el~~l~~~~~~~~~ 109 (191)
T PF04156_consen 83 LSELQQQLQQLQEELDQLQERIQELES 109 (191)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444433333
No 45
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=81.79 E-value=56 Score=32.22 Aligned_cols=156 Identities=22% Similarity=0.259 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHhhhhhhchHH-HHHHHHHhh-HhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhccc
Q psy11615 59 LILIALTICWYVYRQKESSQQ-HLRRMMKDM-EGLQRAELDLANLQKELERARQEQENAASEKIKLERRLQEHQALQGDA 136 (224)
Q Consensus 59 slviavgGcWfAy~Qnr~Sk~-hl~~Mmkdl-e~Lq~AE~sl~dlQ~~Le~aqee~~~v~~EK~~LE~kl~~~~~ak~ea 136 (224)
..+-.+-+=|+.|..++.... ..++.+.++ ..|.++...|.+....|+++..+-.+...-=..|..+|.. .+.+-
T Consensus 249 ~~l~~Lq~El~~~~~~~l~~~~~~~~~~~~~~~~l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~---~K~el 325 (522)
T PF05701_consen 249 AELESLQAELEAAKESKLEEEAEAKEKSSELQSSLASAKKELEEAKKELEKAKEEASSLRASVESLRSELEK---EKEEL 325 (522)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH
Confidence 334444455666665332221 112222222 2357777777777777877777766665544445444444 56666
Q ss_pred ccccccccchhHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCChhhHHHH-hhHHHHHHHHHHHhHhhHHHHHHHHHHHH
Q psy11615 137 SDLKSSSAFSDLEVCQLKQEIELLRNELQRAEGELEDRCWAPPPGLQHWL-QLTHEIENKAYVKKKLMAEKQLQQAREAR 215 (224)
Q Consensus 137 ~rl~~~r~~sd~Els~l~eELe~vR~aL~~AE~eLe~~~ws~P~~LQ~wL-QlT~EvE~q~y~~Kk~~AekQL~~AkE~~ 215 (224)
.+++.....+...++.|+.||..+|..|.-+...-.. .-..|..|..=| |++-|.|. .......+...+..++..+
T Consensus 326 ~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~~~e~~-~k~~~~~l~~~Lqql~~Eae~--Ak~ea~~~~~E~~~~k~E~ 402 (522)
T PF05701_consen 326 ERLKEREKEASSEVSSLEAELNKTRSELEAAKAEEEK-AKEAMSELPKALQQLSSEAEE--AKKEAEEAKEEVEKAKEEA 402 (522)
T ss_pred HHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhhcc-hhhhHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
Confidence 6666655566778888999999999988776543332 223333333333 23444332 2344444444555555555
Q ss_pred Hhhcc
Q psy11615 216 FDRGK 220 (224)
Q Consensus 216 EKikK 220 (224)
+..+-
T Consensus 403 e~~ka 407 (522)
T PF05701_consen 403 EQTKA 407 (522)
T ss_pred HHHHH
Confidence 55443
No 46
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=81.75 E-value=19 Score=31.43 Aligned_cols=42 Identities=38% Similarity=0.516 Sum_probs=30.2
Q ss_pred hhcccccccccccchhHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy11615 132 LQGDASDLKSSSAFSDLEVCQLKQEIELLRNELQRAEGELED 173 (224)
Q Consensus 132 ak~ea~rl~~~r~~sd~Els~l~eELe~vR~aL~~AE~eLe~ 173 (224)
.+..+.-+....+..|-|+++++.+...+-.++..+|-++++
T Consensus 143 l~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~e~~F~~ 184 (190)
T PF05266_consen 143 LQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENAELEFQS 184 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444566778889888888888888888888876
No 47
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=81.63 E-value=28 Score=28.61 Aligned_cols=63 Identities=13% Similarity=0.207 Sum_probs=37.7
Q ss_pred HHHHHHHHhhHhH-HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh--hhhcccccccc
Q psy11615 79 QHLRRMMKDMEGL-QRAELDLANLQKELERARQEQENAASEKIKLERRLQEHQ--ALQGDASDLKS 141 (224)
Q Consensus 79 ~hl~~Mmkdle~L-q~AE~sl~dlQ~~Le~aqee~~~v~~EK~~LE~kl~~~~--~ak~ea~rl~~ 141 (224)
..|...+.+.+.. ..|+..+.+.+++|..|+.+......+-+.-=+++.+++ .|+.++.++..
T Consensus 42 ~~I~~~l~~A~~~~~ea~~~~~e~e~~l~~A~~ea~~ii~~A~~~a~~~~~~~~~~A~~ea~~~~~ 107 (164)
T PRK14471 42 DSIKNALASAEEARKEMQNLQADNERLLKEARAERDAILKEAREIKEKMIADAKEEAQVEGDKMIE 107 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555566555 566777788888888888876666554333333333332 46666665553
No 48
>PF00430 ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR002146 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunits B and B' from the F0 complex in F-ATPases found in chloroplasts and in bacterial plasma membranes. The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In bacterial and chloroplast F-ATPases, the peripheral stalk is composed of one copy of the delta subunit (homologous to OSCP in mitochondria), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o); PDB: 1L2P_A 2KHK_A 1B9U_A.
Probab=81.62 E-value=22 Score=27.38 Aligned_cols=40 Identities=28% Similarity=0.423 Sum_probs=27.7
Q ss_pred HHHHHHHHhhHhH-HHHHHHHHHHHHHHHHHHHHhHHHHHH
Q psy11615 79 QHLRRMMKDMEGL-QRAELDLANLQKELERARQEQENAASE 118 (224)
Q Consensus 79 ~hl~~Mmkdle~L-q~AE~sl~dlQ~~Le~aqee~~~v~~E 118 (224)
..|...+.+.+.+ ..|+.-+.+..++|..|+.+-.....+
T Consensus 33 ~~I~~~~~~a~~~~~ea~~~~~e~~~~l~~a~~ea~~i~~~ 73 (132)
T PF00430_consen 33 AKIQSELEEAEELKEEAEQLLAEYEEKLAEAREEAQEIIEE 73 (132)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777776 667777888888888887766555443
No 49
>KOG0161|consensus
Probab=81.53 E-value=24 Score=40.62 Aligned_cols=59 Identities=27% Similarity=0.283 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhcCCCCChhhHHHHhhHHHHHHHHHHHhHhhHHHHHHHHHHHHHhhccc
Q psy11615 151 CQLKQEIELLRNELQRAEGELEDRCWAPPPGLQHWLQLTHEIENKAYVKKKLMAEKQLQQAREARFDRGKC 221 (224)
Q Consensus 151 s~l~eELe~vR~aL~~AE~eLe~~~ws~P~~LQ~wLQlT~EvE~q~y~~Kk~~AekQL~~AkE~~EKikK~ 221 (224)
.+++.|++.++.+|..||.+|+.- +.-. +..+++ .+..|..++..+...-|+.|..||.
T Consensus 1522 r~le~e~~elQ~aLeElE~~le~e-----E~~~----lr~~~~---~~~~r~e~er~l~ek~Ee~E~~rk~ 1580 (1930)
T KOG0161|consen 1522 RRLEQEKEELQAALEELEAALEAE-----EDKK----LRLQLE---LQQLRSEIERRLQEKDEEIEELRKN 1580 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhh-----hhHH----HHHHHH---HHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 345788999999999999887652 1111 112333 4566778888888888888877764
No 50
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=81.30 E-value=36 Score=30.29 Aligned_cols=105 Identities=21% Similarity=0.334 Sum_probs=62.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhhhchHHHHHHHHHhhHh----HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy11615 50 HVKDYILGTLILIALTICWYVYRQKESSQQHLRRMMKDMEG----LQRAELDLANLQKELERARQEQENAASEKIKLERR 125 (224)
Q Consensus 50 ~wKDi~Lv~slviavgGcWfAy~Qnr~Sk~hl~~Mmkdle~----Lq~AE~sl~dlQ~~Le~aqee~~~v~~EK~~LE~k 125 (224)
-+..++.+++=+|+- .-.+...+..-+.++.++-+. |.++|.||.||.++.++..+.-..- | .-|..
T Consensus 45 i~~e~Ek~i~~~i~e-----~~~~~~~~~~~i~~~~~erdq~~~dL~s~E~sfsdl~~ryek~K~vi~~~---k-~NEE~ 115 (207)
T PF05010_consen 45 IMEEYEKTIAQMIEE-----KQKQKELSEAEIQKLLKERDQAYADLNSLEKSFSDLHKRYEKQKEVIEGY---K-KNEET 115 (207)
T ss_pred HHHHHHHHHHHHHHH-----HHhhHHhHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH---H-HhHHH
Confidence 344555655555544 334455666777788777665 4789999999999999988752222 1 12333
Q ss_pred HHHH----h-hhhcccccccccccchhHHHHHHHHHHHHHHHH
Q psy11615 126 LQEH----Q-ALQGDASDLKSSSAFSDLEVCQLKQEIELLRNE 163 (224)
Q Consensus 126 l~~~----~-~ak~ea~rl~~~r~~sd~Els~l~eELe~vR~a 163 (224)
|+.. . .-..+..|...+...++..+....+|+++||..
T Consensus 116 Lkk~~~ey~~~l~~~eqry~aLK~hAeekL~~ANeei~~v~~~ 158 (207)
T PF05010_consen 116 LKKCIEEYEERLKKEEQRYQALKAHAEEKLEKANEEIAQVRSK 158 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3321 1 123334555555556666666666777776654
No 51
>PRK11677 hypothetical protein; Provisional
Probab=81.28 E-value=17 Score=30.33 Aligned_cols=50 Identities=12% Similarity=0.166 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhchHHHHHHHHHhhHhHHHHHHHHHHHHHHHHH
Q psy11615 54 YILGTLILIALTICWYVYRQKESSQQHLRRMMKDMEGLQRAELDLANLQKELER 107 (224)
Q Consensus 54 i~Lv~slviavgGcWfAy~Qnr~Sk~hl~~Mmkdle~Lq~AE~sl~dlQ~~Le~ 107 (224)
+.++.+||++|+|++++..=+++.+ +-.++-++| ..++..|++-+.++..
T Consensus 5 ~a~i~livG~iiG~~~~R~~~~~~~-~q~~le~eL---e~~k~ele~YkqeV~~ 54 (134)
T PRK11677 5 YALIGLVVGIIIGAVAMRFGNRKLR-QQQALQYEL---EKNKAELEEYRQELVS 54 (134)
T ss_pred HHHHHHHHHHHHHHHHHhhccchhh-HHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 3344444444455544444344433 334444433 3444455555555444
No 52
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=80.36 E-value=13 Score=38.63 Aligned_cols=61 Identities=18% Similarity=0.265 Sum_probs=42.3
Q ss_pred hHHHHHHHHHhhHhH-HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh-hhhcccc
Q psy11615 77 SQQHLRRMMKDMEGL-QRAELDLANLQKELERARQEQENAASEKIKLERRLQEHQ-ALQGDAS 137 (224)
Q Consensus 77 Sk~hl~~Mmkdle~L-q~AE~sl~dlQ~~Le~aqee~~~v~~EK~~LE~kl~~~~-~ak~ea~ 137 (224)
....+.+|+.+|+.. ...|+...++.+.+.++++.++....++..|+++.+..+ .++.+|.
T Consensus 514 ~~~~~~~li~~l~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~~~~~~~~a~ 576 (782)
T PRK00409 514 DKEKLNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEAQ 576 (782)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445788888888887 556777777777777777777777777777776666543 3444443
No 53
>COG1422 Predicted membrane protein [Function unknown]
Probab=80.22 E-value=5.3 Score=35.70 Aligned_cols=57 Identities=19% Similarity=0.232 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhchHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q psy11615 54 YILGTLILIALTICWYVYRQKESSQQHLRRMMKDMEGLQRAELDLANLQKELERARQEQENAASEK 119 (224)
Q Consensus 54 i~Lv~slviavgGcWfAy~Qnr~Sk~hl~~Mmkdle~Lq~AE~sl~dlQ~~Le~aqee~~~v~~EK 119 (224)
..+++++...+.|..+-+.| +..-|-|.+++...-..++|++.++|++.+..-..+|
T Consensus 46 p~lvilV~avi~gl~~~i~~---------~~liD~ekm~~~qk~m~efq~e~~eA~~~~d~~~lkk 102 (201)
T COG1422 46 PHLVILVAAVITGLYITILQ---------KLLIDQEKMKELQKMMKEFQKEFREAQESGDMKKLKK 102 (201)
T ss_pred cHHHHHHHHHHHHHHHHHHH---------HHhccHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 35677777778888887766 4567888888888899999999999998666555543
No 54
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=79.85 E-value=25 Score=32.57 Aligned_cols=33 Identities=12% Similarity=0.010 Sum_probs=27.6
Q ss_pred hHHHHHHHHHHHhHhhHHHHHHHHHHHHHhhcc
Q psy11615 188 LTHEIENKAYVKKKLMAEKQLQQAREARFDRGK 220 (224)
Q Consensus 188 lT~EvE~q~y~~Kk~~AekQL~~AkE~~EKikK 220 (224)
..+..+...+...+++...|+..+.+..++|+|
T Consensus 102 n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~k 134 (314)
T PF04111_consen 102 NELQLELIEFQEERDSLKNQYEYASNQLDRLRK 134 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356677777888889999999999999999987
No 55
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=79.82 E-value=30 Score=27.84 Aligned_cols=37 Identities=22% Similarity=0.278 Sum_probs=23.3
Q ss_pred HHHHHHHHhhHhH-HHHHHHHHHHHHHHHHHHHHhHHH
Q psy11615 79 QHLRRMMKDMEGL-QRAELDLANLQKELERARQEQENA 115 (224)
Q Consensus 79 ~hl~~Mmkdle~L-q~AE~sl~dlQ~~Le~aqee~~~v 115 (224)
..|...+.+.+.+ ..|+..+.+.+.+|+.|+.+-...
T Consensus 38 ~~I~~~l~~a~~~~~~a~~~~~e~~~~l~~a~~ea~~i 75 (156)
T PRK05759 38 KKIADGLAAAERAKKELELAQAKYEAQLAEARAEAAEI 75 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555565555 566666777777777776655444
No 56
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=79.55 E-value=16 Score=27.57 Aligned_cols=15 Identities=27% Similarity=0.457 Sum_probs=6.6
Q ss_pred HHHHHHHHhHHHHHH
Q psy11615 104 ELERARQEQENAASE 118 (224)
Q Consensus 104 ~Le~aqee~~~v~~E 118 (224)
+..+.+.|++.-..|
T Consensus 50 ~~~~l~~e~~~L~lE 64 (97)
T PF04999_consen 50 EIDQLQEENERLRLE 64 (97)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444444333
No 57
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=79.04 E-value=53 Score=30.24 Aligned_cols=105 Identities=24% Similarity=0.276 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhcccccccccccchhHHHHHHH-------HHHHHHHHHHHH
Q psy11615 94 AELDLANLQKELERARQEQENAASEKIKLERRLQEHQALQGDASDLKSSSAFSDLEVCQLK-------QEIELLRNELQR 166 (224)
Q Consensus 94 AE~sl~dlQ~~Le~aqee~~~v~~EK~~LE~kl~~~~~ak~ea~rl~~~r~~sd~Els~l~-------eELe~vR~aL~~ 166 (224)
+..+...|.+.++...+-.......+..|+.++........+.. ...-.+|..++ .+|+..|..|..
T Consensus 161 L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e~~------~~D~~eL~~lr~eL~~~~~~i~~~k~~l~e 234 (325)
T PF08317_consen 161 LQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLVEEIE------SCDQEELEALRQELAEQKEEIEAKKKELAE 234 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh------hcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555555556666666666665322222211 01111333333 333333334444
Q ss_pred HHhhhhhcCCCCChhhHHHHhhHHHHHHHHHHHhHhhHHHHHHHHHHHHHhhcc
Q psy11615 167 AEGELEDRCWAPPPGLQHWLQLTHEIENKAYVKKKLMAEKQLQQAREARFDRGK 220 (224)
Q Consensus 167 AE~eLe~~~ws~P~~LQ~wLQlT~EvE~q~y~~Kk~~AekQL~~AkE~~EKikK 220 (224)
.+.+++. -..++.-.+.++..+..++..|..-+++.|.
T Consensus 235 l~~el~~----------------l~~~i~~~~~~k~~l~~eI~e~~~~~~~~r~ 272 (325)
T PF08317_consen 235 LQEELEE----------------LEEKIEELEEQKQELLAEIAEAEKIREECRG 272 (325)
T ss_pred HHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4444432 1334566777888888888888776665543
No 58
>PRK04863 mukB cell division protein MukB; Provisional
Probab=78.75 E-value=89 Score=35.23 Aligned_cols=42 Identities=17% Similarity=0.294 Sum_probs=29.9
Q ss_pred ChhhHHHHhhHHHHHHHHHHHhHhhHHHHHHHHHHHHHhhccc
Q psy11615 179 PPGLQHWLQLTHEIENKAYVKKKLMAEKQLQQAREARFDRGKC 221 (224)
Q Consensus 179 P~~LQ~wLQlT~EvE~q~y~~Kk~~AekQL~~AkE~~EKikK~ 221 (224)
++.|+.||. .|+-.+.-+..+-...+.++..++...+.+++.
T Consensus 437 dEeLe~~Le-nF~aklee~e~qL~elE~kL~~lea~leql~~~ 478 (1486)
T PRK04863 437 ADNAEDWLE-EFQAKEQEATEELLSLEQKLSVAQAAHSQFEQA 478 (1486)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366777775 456666777777888888888888777766553
No 59
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=78.19 E-value=14 Score=34.30 Aligned_cols=55 Identities=27% Similarity=0.430 Sum_probs=45.7
Q ss_pred hhchHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHH------hHHHHHHHHHHHHHHHH
Q psy11615 74 KESSQQHLRRMMKDMEGLQRAELDLANLQKELERARQE------QENAASEKIKLERRLQE 128 (224)
Q Consensus 74 nr~Sk~hl~~Mmkdle~Lq~AE~sl~dlQ~~Le~aqee------~~~v~~EK~~LE~kl~~ 128 (224)
+.-|+..++.|...+..|.+|.-.+.=|..+|++..+. +++...||.+.++++..
T Consensus 144 ~~LS~~dl~e~~~~l~DLesa~vkV~WLR~~L~Ei~Ea~e~~~~~~~~e~eke~~~r~l~~ 204 (269)
T PF05278_consen 144 KELSESDLKEMIATLKDLESAKVKVDWLRSKLEEILEAKEIYDQHETREEEKEEKDRKLEL 204 (269)
T ss_pred hhhhHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45688899999999999999999999999899888777 55677788777777765
No 60
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=77.67 E-value=17 Score=26.45 Aligned_cols=7 Identities=14% Similarity=0.648 Sum_probs=2.8
Q ss_pred HHHHHHH
Q psy11615 104 ELERARQ 110 (224)
Q Consensus 104 ~Le~aqe 110 (224)
++++.+.
T Consensus 39 ~~~~l~~ 45 (85)
T TIGR02209 39 EIDKLQK 45 (85)
T ss_pred HHHHHHH
Confidence 4444333
No 61
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=77.51 E-value=38 Score=32.78 Aligned_cols=63 Identities=17% Similarity=0.214 Sum_probs=33.0
Q ss_pred HHHHHHHHhhHhH-HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh--hhhcccccccc
Q psy11615 79 QHLRRMMKDMEGL-QRAELDLANLQKELERARQEQENAASEKIKLERRLQEHQ--ALQGDASDLKS 141 (224)
Q Consensus 79 ~hl~~Mmkdle~L-q~AE~sl~dlQ~~Le~aqee~~~v~~EK~~LE~kl~~~~--~ak~ea~rl~~ 141 (224)
..|.+.+.+-+.. ..++....+.++.|+.|+.+-.....+-..-=+++++++ .++.|+.++..
T Consensus 35 ~~I~~~L~eAe~a~~ea~~~~~~~e~~L~~Ak~ea~~Ii~~A~~~A~~~~~~~~~~A~~ea~~i~~ 100 (445)
T PRK13428 35 DTVRQQLAESATAADRLAEADQAHTKAVEDAKAEAARVVEEAREDAERIAEQLRAQADAEAERIKV 100 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555443 334444444555677777766665444333333444432 46677776654
No 62
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=77.20 E-value=25 Score=36.53 Aligned_cols=60 Identities=17% Similarity=0.315 Sum_probs=37.6
Q ss_pred HHHHHHHHHhhHhH-HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh-hhhcccc
Q psy11615 78 QQHLRRMMKDMEGL-QRAELDLANLQKELERARQEQENAASEKIKLERRLQEHQ-ALQGDAS 137 (224)
Q Consensus 78 k~hl~~Mmkdle~L-q~AE~sl~dlQ~~Le~aqee~~~v~~EK~~LE~kl~~~~-~ak~ea~ 137 (224)
...+.+|+.+|+.. ...|+...++.+.++++.+.++....+...|+++-+... .++.+|.
T Consensus 510 ~~~~~~li~~L~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~~~~a~~ea~ 571 (771)
T TIGR01069 510 KEEINVLIEKLSALEKELEQKNEHLEKLLKEQEKLKKELEQEMEELKERERNKKLELEKEAQ 571 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44577888888776 456666666666666666666666666666666555533 3444443
No 63
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=76.73 E-value=41 Score=27.67 Aligned_cols=37 Identities=19% Similarity=0.315 Sum_probs=20.2
Q ss_pred HHHHHHHHhhHhH-HHHHHHHHHHHHHHHHHHHHhHHH
Q psy11615 79 QHLRRMMKDMEGL-QRAELDLANLQKELERARQEQENA 115 (224)
Q Consensus 79 ~hl~~Mmkdle~L-q~AE~sl~dlQ~~Le~aqee~~~v 115 (224)
..|...+.+-+.+ +.|+.-+.+.+++|..|+.+-..-
T Consensus 56 ~~I~~~l~~Ae~~~~ea~~~~~e~e~~L~~A~~ea~~i 93 (156)
T CHL00118 56 EYIRKNLTKASEILAKANELTKQYEQELSKARKEAQLE 93 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555544 455555666666666666554443
No 64
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=76.15 E-value=27 Score=31.43 Aligned_cols=87 Identities=22% Similarity=0.173 Sum_probs=52.5
Q ss_pred hHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH----------h-hhhcccccccccccc
Q psy11615 77 SQQHLRRMMKDMEGLQRAELDLANLQKELERARQEQENAASEKIKLERRLQEH----------Q-ALQGDASDLKSSSAF 145 (224)
Q Consensus 77 Sk~hl~~Mmkdle~Lq~AE~sl~dlQ~~Le~aqee~~~v~~EK~~LE~kl~~~----------~-~ak~ea~rl~~~r~~ 145 (224)
.+.++..|-+-...|.....++++-..-|++...|...-..||....++|+++ | .++.+-.+..+.-.-
T Consensus 6 ir~K~~~lek~k~~i~~e~~~~e~ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r 85 (230)
T PF10146_consen 6 IRNKTLELEKLKNEILQEVESLENEEKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQR 85 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556666666666666666677777777777777777777888888888763 1 234333333321111
Q ss_pred hhHHHHHHHHHHHHHHHH
Q psy11615 146 SDLEVCQLKQEIELLRNE 163 (224)
Q Consensus 146 sd~Els~l~eELe~vR~a 163 (224)
...|+..|+.++..+|..
T Consensus 86 ~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 86 LYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 112566667777777776
No 65
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=75.70 E-value=9.2 Score=26.80 Aligned_cols=34 Identities=21% Similarity=0.290 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHhhhhhhchHHHHHHHHHhhHhH
Q psy11615 58 TLILIALTICWYVYRQKESSQQHLRRMMKDMEGL 91 (224)
Q Consensus 58 ~slviavgGcWfAy~Qnr~Sk~hl~~Mmkdle~L 91 (224)
+.+++++.|+.+...-.-+-+..++++-++++.+
T Consensus 27 ~f~~G~llg~l~~~~~~~~~r~~~~~~~k~l~~l 60 (68)
T PF06305_consen 27 AFLLGALLGWLLSLPSRLRLRRRIRRLRKELKKL 60 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444433334444444444444443
No 66
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=75.48 E-value=69 Score=31.83 Aligned_cols=15 Identities=27% Similarity=0.271 Sum_probs=8.1
Q ss_pred HHHHHHHHHhhcccc
Q psy11615 208 LQQAREARFDRGKCI 222 (224)
Q Consensus 208 L~~AkE~~EKikK~~ 222 (224)
...|++.|++.-+.|
T Consensus 173 ~~~~~~~a~~~a~~i 187 (514)
T TIGR03319 173 EEEAKEEADKKAKEI 187 (514)
T ss_pred HHHHHHHHHHHHHHH
Confidence 345666666654443
No 67
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=75.16 E-value=6.1 Score=29.54 Aligned_cols=19 Identities=21% Similarity=0.156 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHhhhh
Q psy11615 55 ILGTLILIALTICWYVYRQ 73 (224)
Q Consensus 55 ~Lv~slviavgGcWfAy~Q 73 (224)
+.+++|+++++|.|+|-.+
T Consensus 3 iilali~G~~~Gff~ar~~ 21 (64)
T PF03672_consen 3 IILALIVGAVIGFFIARKY 21 (64)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4456666677777777543
No 68
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=75.13 E-value=26 Score=31.35 Aligned_cols=34 Identities=35% Similarity=0.571 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy11615 95 ELDLANLQKELERARQEQENAASEKIKLERRLQE 128 (224)
Q Consensus 95 E~sl~dlQ~~Le~aqee~~~v~~EK~~LE~kl~~ 128 (224)
++.+.|++..|.++...--.+...+.-+|+++.+
T Consensus 30 ~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~ 63 (225)
T COG1842 30 EQAIRDMESELAKARQALAQAIARQKQLERKLEE 63 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777777888888777788888888887776
No 69
>KOG0980|consensus
Probab=75.13 E-value=26 Score=37.65 Aligned_cols=74 Identities=28% Similarity=0.400 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy11615 97 DLANLQKELERARQEQENAASEKIKLERRLQEHQALQGDASDLKSSSAFSDLEVCQLKQEIELLRNELQRAEGELED 173 (224)
Q Consensus 97 sl~dlQ~~Le~aqee~~~v~~EK~~LE~kl~~~~~ak~ea~rl~~~r~~sd~Els~l~eELe~vR~aL~~AE~eLe~ 173 (224)
-+.|.|+.++-+++....+..++.||...+.. .+.++.++-+.-++-..-+..+++|+..+-..+.+.++.+..
T Consensus 446 K~~di~kQle~~~~s~~~~~~~~~~L~d~le~---~~~~~~~~~~K~e~~~~~le~l~~El~~l~~e~~~lq~~~~~ 519 (980)
T KOG0980|consen 446 KYDDIQKQLESAEQSIDDVEEENTNLNDQLEE---LQRAAGRAETKTESQAKALESLRQELALLLIELEELQRTLSN 519 (980)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH---HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 38999999999999999999999999999887 333344433322333336677888998888888888887654
No 70
>PF14991 MLANA: Protein melan-A; PDB: 2GTZ_F 2GT9_F 3MRO_P 2GUO_C 3MRQ_P 2GTW_C 3L6F_C 3MRP_P.
Probab=74.24 E-value=1 Score=37.27 Aligned_cols=24 Identities=25% Similarity=0.541 Sum_probs=0.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhc
Q psy11615 53 DYILGTLILIALTICWYVYRQKES 76 (224)
Q Consensus 53 Di~Lv~slviavgGcWfAy~Qnr~ 76 (224)
.|..+|+-++.+.||||.-+.+-+
T Consensus 30 GiL~VILgiLLliGCWYckRRSGY 53 (118)
T PF14991_consen 30 GILIVILGILLLIGCWYCKRRSGY 53 (118)
T ss_dssp S-----------------------
T ss_pred eeHHHHHHHHHHHhheeeeecchh
Confidence 366777788889999998765543
No 71
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=74.19 E-value=37 Score=25.93 Aligned_cols=80 Identities=31% Similarity=0.462 Sum_probs=48.6
Q ss_pred HhhHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHHHHHHHHH
Q psy11615 86 KDMEGLQRAELDLANLQKELERARQEQENAASEKIKLERRLQEHQALQGDASDLKSSSAFSDLEVCQLKQEIELLRNELQ 165 (224)
Q Consensus 86 kdle~Lq~AE~sl~dlQ~~Le~aqee~~~v~~EK~~LE~kl~~~~~ak~ea~rl~~~r~~sd~Els~l~eELe~vR~aL~ 165 (224)
-|++.+-..-+....++.+++..+.++-.+..+ +..-..+..++..|.. ++..+++++..+-..+.
T Consensus 26 ~~vd~i~~ld~~~r~l~~~~e~lr~~rN~~sk~-------I~~~~~~~~~~~~l~~-------e~~~lk~~i~~le~~~~ 91 (108)
T PF02403_consen 26 EDVDEIIELDQERRELQQELEELRAERNELSKE-------IGKLKKAGEDAEELKA-------EVKELKEEIKELEEQLK 91 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHCHTTCCTHHHHH-------HHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-------HHHHhhCcccHHHHHH-------HHHHHHHHHHHHHHHHH
Confidence 356666666666777777777777754444432 2221112223333332 56667888888888888
Q ss_pred HHHhhhhhcCCCCC
Q psy11615 166 RAEGELEDRCWAPP 179 (224)
Q Consensus 166 ~AE~eLe~~~ws~P 179 (224)
.++.++..-.++-|
T Consensus 92 ~~e~~l~~~l~~iP 105 (108)
T PF02403_consen 92 ELEEELNELLLSIP 105 (108)
T ss_dssp HHHHHHHHHHCTS-
T ss_pred HHHHHHHHHHHcCC
Confidence 88888876555555
No 72
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=73.41 E-value=17 Score=39.08 Aligned_cols=40 Identities=23% Similarity=0.371 Sum_probs=29.5
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCChhhHHHHh
Q psy11615 144 AFSDLEVCQLKQEIELLRNELQRAEGELEDRCWAPPPGLQHWLQ 187 (224)
Q Consensus 144 ~~sd~Els~l~eELe~vR~aL~~AE~eLe~~~ws~P~~LQ~wLQ 187 (224)
..++.++..++.++..++.++....+.|.. .|..|..||.
T Consensus 507 ~~a~~~l~~~~~~~~~~~~~~~~l~~~L~p----~~gSL~~fL~ 546 (1201)
T PF12128_consen 507 DQAEEELRQARRELEELRAQIAELQRQLDP----QKGSLLEFLR 546 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCC----CCCcHHHHHH
Confidence 444556667777888888888877777764 3888999994
No 73
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=73.25 E-value=30 Score=27.90 Aligned_cols=24 Identities=46% Similarity=0.614 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhh
Q psy11615 149 EVCQLKQEIELLRNELQRAEGELE 172 (224)
Q Consensus 149 Els~l~eELe~vR~aL~~AE~eLe 172 (224)
+++.++.++..++.....|...|+
T Consensus 67 e~~~~~~~~~~l~~~~~~a~~~l~ 90 (132)
T PF07926_consen 67 ELQELQQEINELKAEAESAKAELE 90 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555666666666666666554
No 74
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=73.00 E-value=29 Score=32.35 Aligned_cols=32 Identities=22% Similarity=0.258 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhc-CCCCCh
Q psy11615 149 EVCQLKQEIELLRNELQRAEGELEDR-CWAPPP 180 (224)
Q Consensus 149 Els~l~eELe~vR~aL~~AE~eLe~~-~ws~P~ 180 (224)
.+....++...++.++..||+-++.. .|++-+
T Consensus 240 ~I~~~~~~k~e~~~~I~~ae~~~~~~r~~t~~E 272 (312)
T smart00787 240 KIEDLTNKKSELNTEIAEAEKKLEQCRGFTFKE 272 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHH
Confidence 34444567777778888888777643 576654
No 75
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=72.97 E-value=29 Score=25.26 Aligned_cols=14 Identities=29% Similarity=0.420 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHH
Q psy11615 97 DLANLQKELERARQ 110 (224)
Q Consensus 97 sl~dlQ~~Le~aqe 110 (224)
.+.+++.+-...+.
T Consensus 39 ~~~~l~~en~~L~~ 52 (85)
T TIGR02209 39 EIDKLQKEWRDLQL 52 (85)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333444444333
No 76
>PRK12705 hypothetical protein; Provisional
Probab=72.84 E-value=1.1e+02 Score=30.76 Aligned_cols=14 Identities=14% Similarity=0.116 Sum_probs=7.9
Q ss_pred HHHHHHHHhhcccc
Q psy11615 209 QQAREARFDRGKCI 222 (224)
Q Consensus 209 ~~AkE~~EKikK~~ 222 (224)
..|++.+++.-+.|
T Consensus 168 ~~~~~~a~~~A~~i 181 (508)
T PRK12705 168 EEADLEAERKAQNI 181 (508)
T ss_pred HHHHHHHHHHHHHH
Confidence 45666666655444
No 77
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=72.67 E-value=36 Score=29.43 Aligned_cols=30 Identities=30% Similarity=0.615 Sum_probs=14.3
Q ss_pred HHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHH
Q psy11615 78 QQHLRRMMKDMEGLQRAELDLANLQKELERARQ 110 (224)
Q Consensus 78 k~hl~~Mmkdle~Lq~AE~sl~dlQ~~Le~aqe 110 (224)
+.-+.++.++++.+ +..+.+++.+++.+..
T Consensus 68 ~~~~~~l~~~~~~~---~~~i~~l~~~i~~~~~ 97 (188)
T PF03962_consen 68 QNKLEKLQKEIEEL---EKKIEELEEKIEEAKK 97 (188)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHh
Confidence 33444444444433 3345555555555543
No 78
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=72.53 E-value=1.2e+02 Score=31.02 Aligned_cols=64 Identities=31% Similarity=0.382 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHhhhhh-c-CCCCChhhHHHHhhHHHHH-----HHHHHHhHhhHHHHHHHHHHHHHhhcccc
Q psy11615 154 KQEIELLRNELQRAEGELED-R-CWAPPPGLQHWLQLTHEIE-----NKAYVKKKLMAEKQLQQAREARFDRGKCI 222 (224)
Q Consensus 154 ~eELe~vR~aL~~AE~eLe~-~-~ws~P~~LQ~wLQlT~EvE-----~q~y~~Kk~~AekQL~~AkE~~EKikK~~ 222 (224)
+-|.++|+..|..|.-+|.. + .|.-- -+ .|.|..| +.-.+.-.+.+++-|+.-+..|.||.+.|
T Consensus 331 RLe~aql~~qLad~~l~lke~~~q~~qE--k~---~l~~~~e~~k~~ie~L~~el~~~e~~lqEer~E~qkL~~ql 401 (546)
T PF07888_consen 331 RLEAAQLKLQLADASLELKEGRSQWAQE--KQ---ALQHSAEADKDEIEKLSRELQMLEEHLQEERMERQKLEKQL 401 (546)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHH--HH---HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888888887766632 1 12211 01 1224444 44445555566667788888999998765
No 79
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=72.31 E-value=53 Score=26.96 Aligned_cols=64 Identities=17% Similarity=0.286 Sum_probs=36.7
Q ss_pred HHHHHHHHHhhHhH-HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH-h-hhhcccccccc
Q psy11615 78 QQHLRRMMKDMEGL-QRAELDLANLQKELERARQEQENAASEKIKLERRLQEH-Q-ALQGDASDLKS 141 (224)
Q Consensus 78 k~hl~~Mmkdle~L-q~AE~sl~dlQ~~Le~aqee~~~v~~EK~~LE~kl~~~-~-~ak~ea~rl~~ 141 (224)
+..|...+.+-+.. ..|+..+.+.+..|..|+.+-.....+-..-=++.+++ + .|+.++.++.+
T Consensus 41 ~~~I~~~l~~Ae~~~~ea~~~~~e~e~~l~~A~~ea~~ii~~A~~~a~~~~~~~l~~A~~ea~~~~~ 107 (164)
T PRK14473 41 TRRIEESLRDAEKVREQLANAKRDYEAELAKARQEAAKIVAQAQERARAQEAEIIAQARREAEKIKE 107 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666 56677777788888888776665544332222233332 2 46666665543
No 80
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=72.00 E-value=1.3e+02 Score=32.88 Aligned_cols=25 Identities=20% Similarity=0.336 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhh
Q psy11615 149 EVCQLKQEIELLRNELQRAEGELED 173 (224)
Q Consensus 149 Els~l~eELe~vR~aL~~AE~eLe~ 173 (224)
++..|.+++++++.++..++.+++.
T Consensus 889 ~L~el~~el~~l~~~~~~~~~~~~~ 913 (1311)
T TIGR00606 889 QLVELSTEVQSLIREIKDAKEQDSP 913 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4444567777777777777766653
No 81
>PRK10884 SH3 domain-containing protein; Provisional
Probab=71.98 E-value=29 Score=30.63 Aligned_cols=22 Identities=32% Similarity=0.368 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q psy11615 149 EVCQLKQEIELLRNELQRAEGE 170 (224)
Q Consensus 149 Els~l~eELe~vR~aL~~AE~e 170 (224)
.++.|++|..+++.+|..+..+
T Consensus 133 ~~~~L~~~n~~L~~~l~~~~~~ 154 (206)
T PRK10884 133 VINGLKEENQKLKNQLIVAQKK 154 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444333
No 82
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=71.92 E-value=60 Score=27.36 Aligned_cols=18 Identities=22% Similarity=0.429 Sum_probs=12.1
Q ss_pred hchHHHHHHHHHhhHhHH
Q psy11615 75 ESSQQHLRRMMKDMEGLQ 92 (224)
Q Consensus 75 r~Sk~hl~~Mmkdle~Lq 92 (224)
-+-++||..|=+||+..+
T Consensus 20 dsle~~v~~LEreLe~~q 37 (140)
T PF10473_consen 20 DSLEDHVESLERELEMSQ 37 (140)
T ss_pred hhHHHHHHHHHHHHHHHH
Confidence 345677888877776553
No 83
>PF14235 DUF4337: Domain of unknown function (DUF4337)
Probab=71.88 E-value=18 Score=30.60 Aligned_cols=58 Identities=33% Similarity=0.440 Sum_probs=47.6
Q ss_pred HhhhhhhchHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy11615 69 YVYRQKESSQQHLRRMMKDMEGLQRAELDLANLQKELERARQEQENAASEKIKLERRLQE 128 (224)
Q Consensus 69 fAy~Qnr~Sk~hl~~Mmkdle~Lq~AE~sl~dlQ~~Le~aqee~~~v~~EK~~LE~kl~~ 128 (224)
++|-|-|+-|.|+-++..|+-.+.... -..+++++++-+.+......|+..||++-++
T Consensus 41 Wa~YQAKsiK~~l~e~~~~~l~~~~~~--~~~~~~~i~~Y~~~~~~~~~e~~~l~~~A~~ 98 (157)
T PF14235_consen 41 WAYYQAKSIKQHLAELAADLLELELAA--RAAYQKKIARYKKEKARYKSEAEELEAKAKE 98 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccc--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578899999999999999998887543 5678888888888888888888888877655
No 84
>KOG0933|consensus
Probab=70.91 E-value=1.2e+02 Score=33.59 Aligned_cols=37 Identities=24% Similarity=0.124 Sum_probs=21.6
Q ss_pred hhhHHHHhhHHHHHHHHHHHhHhhHHHHHHHHHHHHHhhcc
Q psy11615 180 PGLQHWLQLTHEIENKAYVKKKLMAEKQLQQAREARFDRGK 220 (224)
Q Consensus 180 ~~LQ~wLQlT~EvE~q~y~~Kk~~AekQL~~AkE~~EKikK 220 (224)
.-.-.-|+++||...+ -..+.+.+|.+-...|+.|+-
T Consensus 814 ~~e~e~l~lE~e~l~~----e~~~~k~~l~~~~~~~~~l~~ 850 (1174)
T KOG0933|consen 814 ENEYERLQLEHEELEK----EISSLKQQLEQLEKQISSLKS 850 (1174)
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 3344457777776543 344556666666666665543
No 85
>PRK04863 mukB cell division protein MukB; Provisional
Probab=70.57 E-value=1e+02 Score=34.82 Aligned_cols=45 Identities=20% Similarity=0.290 Sum_probs=27.9
Q ss_pred HHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q psy11615 79 QHLRRMMKDMEGLQRAELDLANLQKELERARQEQENAASEKIKLE 123 (224)
Q Consensus 79 ~hl~~Mmkdle~Lq~AE~sl~dlQ~~Le~aqee~~~v~~EK~~LE 123 (224)
.+|.++...+..|..=++++..++.+.+.|...++++....-.|.
T Consensus 918 ~~L~qLE~~l~~L~~Dp~~~e~lr~e~~~~~~~~~~~~~~~~~l~ 962 (1486)
T PRK04863 918 NALAQLEPIVSVLQSDPEQFEQLKQDYQQAQQTQRDAKQQAFALT 962 (1486)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666666677777666666666666544444443
No 86
>KOG2629|consensus
Probab=70.48 E-value=83 Score=29.89 Aligned_cols=50 Identities=12% Similarity=0.042 Sum_probs=27.6
Q ss_pred hhhhhcccccccCCCCCCchhHHHHHHHHHHHHHHHHHHhhhhhhchHHHHHHHH
Q psy11615 31 AFVSTHGKSIDDVDRNSTSHVKDYILGTLILIALTICWYVYRQKESSQQHLRRMM 85 (224)
Q Consensus 31 sf~~aH~~s~D~VDRer~~~wKDi~Lv~slviavgGcWfAy~Qnr~Sk~hl~~Mm 85 (224)
.+...|---+-.++...+.+|+|+ .++.+++-| |+|-=.+.-|..|-.||
T Consensus 63 ~~~~~p~~~~~~P~~~~~~rwrdy--~vmAvi~aG---i~y~~y~~~K~YV~P~~ 112 (300)
T KOG2629|consen 63 VVSGGPPLLIIQPQQNVLRRWRDY--FVMAVILAG---IAYAAYRFVKSYVLPRF 112 (300)
T ss_pred ccCCCchhhhcCCCccchhhHHHH--HHHHHHHhh---HHHHHHHHHHHHHHHHh
Confidence 444445444556667889999999 333333333 33333344455555554
No 87
>PRK00523 hypothetical protein; Provisional
Probab=70.35 E-value=11 Score=28.80 Aligned_cols=23 Identities=9% Similarity=-0.032 Sum_probs=15.4
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhh
Q psy11615 51 VKDYILGTLILIALTICWYVYRQ 73 (224)
Q Consensus 51 wKDi~Lv~slviavgGcWfAy~Q 73 (224)
|=-+..+.+|+.++||.|+|-.+
T Consensus 7 ~I~l~i~~li~G~~~Gffiark~ 29 (72)
T PRK00523 7 ALGLGIPLLIVGGIIGYFVSKKM 29 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445566777888888887554
No 88
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=70.20 E-value=1e+02 Score=29.42 Aligned_cols=34 Identities=18% Similarity=0.426 Sum_probs=21.0
Q ss_pred hchHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHH
Q psy11615 75 ESSQQHLRRMMKDMEGLQRAELDLANLQKELERARQE 111 (224)
Q Consensus 75 r~Sk~hl~~Mmkdle~Lq~AE~sl~dlQ~~Le~aqee 111 (224)
+.=+.|+.+|..-..++.. .+.+....|.+...+
T Consensus 216 kDWR~hleqm~~~~~~I~~---~~~~~~~~L~kl~~~ 249 (359)
T PF10498_consen 216 KDWRSHLEQMKQHKKSIES---ALPETKSQLDKLQQD 249 (359)
T ss_pred chHHHHHHHHHHHHHHHHH---hhhHHHHHHHHHHHH
Confidence 5667899999888877654 334444444444443
No 89
>KOG0996|consensus
Probab=70.14 E-value=1.2e+02 Score=33.76 Aligned_cols=96 Identities=25% Similarity=0.328 Sum_probs=53.1
Q ss_pred HHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-------HHHHHHh-hhhcccccccccccchhHH
Q psy11615 78 QQHLRRMMKDMEGLQRAELDLANLQKELERARQEQENAASEKIKLE-------RRLQEHQ-ALQGDASDLKSSSAFSDLE 149 (224)
Q Consensus 78 k~hl~~Mmkdle~Lq~AE~sl~dlQ~~Le~aqee~~~v~~EK~~LE-------~kl~~~~-~ak~ea~rl~~~r~~sd~E 149 (224)
++|.+++=|....+..+.....++.+-.++++.+.+.-..|.-.|+ +++.+.. ..+.+..-++.-..--+-+
T Consensus 408 K~~~~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~~~~~~l~e~~~~l~~~t~~~~~e~~~~eke 487 (1293)
T KOG0996|consen 408 KRLTSKIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEELLEKEERELDEILDSLKQETEGIREEIEKLEKE 487 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHH
Confidence 3444455555555666666666776666766666666655555554 4444432 3455554444411112224
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhh
Q psy11615 150 VCQLKQEIELLRNELQRAEGELED 173 (224)
Q Consensus 150 ls~l~eELe~vR~aL~~AE~eLe~ 173 (224)
+..+..++-.+|+.++-||-+|++
T Consensus 488 l~~~~~~~n~~~~e~~vaesel~~ 511 (1293)
T KOG0996|consen 488 LMPLLKQVNEARSELDVAESELDI 511 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444456666677777777777665
No 90
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=69.95 E-value=69 Score=33.59 Aligned_cols=19 Identities=47% Similarity=0.753 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy11615 149 EVCQLKQEIELLRNELQRA 167 (224)
Q Consensus 149 Els~l~eELe~vR~aL~~A 167 (224)
|+.||++|++.++++|..|
T Consensus 129 ei~rl~Ee~~~l~~qlee~ 147 (717)
T PF09730_consen 129 EIKRLEEEIELLNSQLEEA 147 (717)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444455556665555554
No 91
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=69.72 E-value=58 Score=26.36 Aligned_cols=45 Identities=33% Similarity=0.553 Sum_probs=23.1
Q ss_pred HHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy11615 81 LRRMMKDMEGLQRAELDLANLQKELERARQEQENAASEKIKLERRLQE 128 (224)
Q Consensus 81 l~~Mmkdle~Lq~AE~sl~dlQ~~Le~aqee~~~v~~EK~~LE~kl~~ 128 (224)
+.++..|++.|+ .....|+.+++.++.+-..+...-..++.+++.
T Consensus 61 ~~~l~~d~~~l~---~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~ 105 (151)
T PF11559_consen 61 LRRLRSDIERLQ---NDVERLKEQLEELERELASAEEKERQLQKQLKS 105 (151)
T ss_pred HHHHHhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444443 344455555555555555555555555555554
No 92
>PRK11281 hypothetical protein; Provisional
Probab=69.66 E-value=81 Score=34.54 Aligned_cols=40 Identities=20% Similarity=0.360 Sum_probs=23.3
Q ss_pred HHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q psy11615 79 QHLRRMMKDMEGLQRAELDLANLQKELERARQEQENAASE 118 (224)
Q Consensus 79 ~hl~~Mmkdle~Lq~AE~sl~dlQ~~Le~aqee~~~v~~E 118 (224)
.++.+-...++...+.++...+++++++.|.++-+++..+
T Consensus 63 ~~l~~tL~~L~qi~~~~~~~~~L~k~l~~Ap~~l~~a~~~ 102 (1113)
T PRK11281 63 QDLEQTLALLDKIDRQKEETEQLKQQLAQAPAKLRQAQAE 102 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 4444445555555555566666777777766665555543
No 93
>PRK01844 hypothetical protein; Provisional
Probab=69.53 E-value=13 Score=28.44 Aligned_cols=20 Identities=5% Similarity=-0.174 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHhhhh
Q psy11615 54 YILGTLILIALTICWYVYRQ 73 (224)
Q Consensus 54 i~Lv~slviavgGcWfAy~Q 73 (224)
+..+.+|++++||.|+|-.+
T Consensus 9 l~I~~li~G~~~Gff~ark~ 28 (72)
T PRK01844 9 VGVVALVAGVALGFFIARKY 28 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44566777888888887554
No 94
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=69.27 E-value=1.5e+02 Score=30.87 Aligned_cols=20 Identities=35% Similarity=0.630 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHhhhh
Q psy11615 153 LKQEIELLRNELQRAEGELE 172 (224)
Q Consensus 153 l~eELe~vR~aL~~AE~eLe 172 (224)
|+.|+.++|.+|+..|.++.
T Consensus 550 lE~E~~~lr~elk~kee~~~ 569 (697)
T PF09726_consen 550 LESELKKLRRELKQKEEQIR 569 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 68899999999998886543
No 95
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=69.26 E-value=34 Score=29.92 Aligned_cols=73 Identities=25% Similarity=0.348 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh-hhhcccccccccccchhHHHHHHHHHHHHHHHHHHHHHhhh
Q psy11615 99 ANLQKELERARQEQENAASEKIKLERRLQEHQ-ALQGDASDLKSSSAFSDLEVCQLKQEIELLRNELQRAEGEL 171 (224)
Q Consensus 99 ~dlQ~~Le~aqee~~~v~~EK~~LE~kl~~~~-~ak~ea~rl~~~r~~sd~Els~l~eELe~vR~aL~~AE~eL 171 (224)
.+|+.+|+.+...-......=++||++++-.. ..+............+..+++.|..|+..+...|+.-|++|
T Consensus 121 eeL~~kL~~~~~~l~~~~~ki~~Lek~leL~~k~~~rql~~e~kK~~~~~~~~~~l~~ei~~L~~klkEKer~L 194 (194)
T PF15619_consen 121 EELQRKLSQLEQKLQEKEKKIQELEKQLELENKSFRRQLASEKKKHKEAQEEVKSLQEEIQRLNQKLKEKEREL 194 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 45666666666666666666667777776532 11111111111112233467777888999988888888765
No 96
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=68.99 E-value=40 Score=28.37 Aligned_cols=14 Identities=43% Similarity=0.650 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHH
Q psy11615 149 EVCQLKQEIELLRN 162 (224)
Q Consensus 149 Els~l~eELe~vR~ 162 (224)
++++|+.||..+|.
T Consensus 67 el~~L~~EL~~l~s 80 (140)
T PF10473_consen 67 ELNQLELELDTLRS 80 (140)
T ss_pred HHHHHHHHHHHHHH
Confidence 44445555555554
No 97
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=68.93 E-value=11 Score=28.85 Aligned_cols=15 Identities=13% Similarity=0.067 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHhhhh
Q psy11615 59 LILIALTICWYVYRQ 73 (224)
Q Consensus 59 slviavgGcWfAy~Q 73 (224)
++++.+||.|++-.|
T Consensus 14 ll~G~~~G~fiark~ 28 (71)
T COG3763 14 LLAGLIGGFFIARKQ 28 (71)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444556777777655
No 98
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=68.65 E-value=95 Score=28.37 Aligned_cols=38 Identities=34% Similarity=0.469 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy11615 91 LQRAELDLANLQKELERARQEQENAASEKIKLERRLQE 128 (224)
Q Consensus 91 Lq~AE~sl~dlQ~~Le~aqee~~~v~~EK~~LE~kl~~ 128 (224)
|.+|+..++.+-+.++..+.+-..+..+.-.+|..+++
T Consensus 33 l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~ 70 (239)
T COG1579 33 LKKAKAELEALNKALEALEIELEDLENQVSQLESEIQE 70 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444455555555555444444444444444444
No 99
>PF08139 LPAM_1: Prokaryotic membrane lipoprotein lipid attachment site; InterPro: IPR012640 In prokaryotes, membrane lipoproteins are synthesized with a precursor signal peptide, which is cleaved by a specific lipoprotein signal peptidase (signal peptidase II). The peptidase recognises a conserved sequence and cuts upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached [,]. This lipid attachment site is found in homologues of the VirB proteins of type IV secretion systems (T4SS). Conjugal transfer across the cell envelope of Gram-negative bacteria is mediated by a supramolecular structure termed mating pair formation (Mpf) complex. Collectively, secretion pathways ancestrally related to bacterial conjugation systems are now known as T4SS. T4SS are involved in the delivery of effector molecules to eukaryotic target cells; each of these systems exports distinct DNA or protein substrates to effect a myriad of changes in host cell physiology during infection [].
Probab=68.45 E-value=4.4 Score=25.27 Aligned_cols=22 Identities=32% Similarity=0.402 Sum_probs=19.5
Q ss_pred CCCchhHHHHHHHHHHHHHHHH
Q psy11615 46 NSTSHVKDYILGTLILIALTIC 67 (224)
Q Consensus 46 er~~~wKDi~Lv~slviavgGc 67 (224)
+.++-||-|.+.+..+..+.||
T Consensus 2 ~~~~mmKkil~~l~a~~~LagC 23 (25)
T PF08139_consen 2 PSLSMMKKILFPLLALFMLAGC 23 (25)
T ss_pred chHHHHHHHHHHHHHHHHHhhc
Confidence 3467899999999999999999
No 100
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=68.38 E-value=43 Score=30.69 Aligned_cols=102 Identities=19% Similarity=0.197 Sum_probs=57.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH---------HHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHHHH
Q psy11615 90 GLQRAELDLANLQKELERARQEQENAASEKI---------KLERRLQEHQALQGDASDLKSSSAFSDLEVCQLKQEIELL 160 (224)
Q Consensus 90 ~Lq~AE~sl~dlQ~~Le~aqee~~~v~~EK~---------~LE~kl~~~~~ak~ea~rl~~~r~~sd~Els~l~eELe~v 160 (224)
.|..++..|.+.+.+|..-+.++..+..+.+ +|+.++.+ ++.+-..++..-+..--.+..++.++..+
T Consensus 178 ql~~~~~~l~~ae~~l~~fr~~~~~~d~~~~~~~~~~~i~~L~~~l~~---~~~~l~~l~~~~~~~~P~v~~l~~~i~~l 254 (362)
T TIGR01010 178 EVKEAEQRLNATKAELLKYQIKNKVFDPKAQSSAQLSLISTLEGELIR---VQAQLAQLRSITPEQNPQVPSLQARIKSL 254 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhCCCCCCchHHHHHHHHHH
Confidence 3456666666666666666666655433321 22222222 22221122221111122677788899999
Q ss_pred HHHHHHHHhhhhhc-CCCCChhhHHHHhhHHHHHH
Q psy11615 161 RNELQRAEGELEDR-CWAPPPGLQHWLQLTHEIEN 194 (224)
Q Consensus 161 R~aL~~AE~eLe~~-~ws~P~~LQ~wLQlT~EvE~ 194 (224)
+..+..-.+.+.+. .-.-|......-.|..++|+
T Consensus 255 ~~~i~~e~~~i~~~~~~~l~~~~~~~~~L~re~~~ 289 (362)
T TIGR01010 255 RKQIDEQRNQLSGGLGDSLNEQTADYQRLVLQNEL 289 (362)
T ss_pred HHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHH
Confidence 99888877766543 23457777777778777776
No 101
>KOG0996|consensus
Probab=68.07 E-value=1.7e+02 Score=32.82 Aligned_cols=23 Identities=17% Similarity=0.112 Sum_probs=10.5
Q ss_pred HHHHHHhHhhHHHHHHHHHHHHH
Q psy11615 194 NKAYVKKKLMAEKQLQQAREARF 216 (224)
Q Consensus 194 ~q~y~~Kk~~AekQL~~AkE~~E 216 (224)
....+.+...+++.|...+....
T Consensus 551 l~~~k~e~~~~~k~l~~~~~e~~ 573 (1293)
T KOG0996|consen 551 LPSLKQELKEKEKELPKLRKEER 573 (1293)
T ss_pred hhhHHHHHHHHHHhHHHHHHHHH
Confidence 33344444445555544444443
No 102
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=68.04 E-value=1.4e+02 Score=29.97 Aligned_cols=14 Identities=21% Similarity=0.686 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHh
Q psy11615 57 GTLILIALTICWYV 70 (224)
Q Consensus 57 v~slviavgGcWfA 70 (224)
+++.++|++..||+
T Consensus 9 ~~~~~~~~~~~~~~ 22 (475)
T PRK10361 9 AVIALVGVAIGWLF 22 (475)
T ss_pred HHHHHHHHHHHHHH
Confidence 33334555555777
No 103
>PRK12705 hypothetical protein; Provisional
Probab=67.87 E-value=1.2e+02 Score=30.38 Aligned_cols=15 Identities=33% Similarity=0.348 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHh
Q psy11615 56 LGTLILIALTICWYV 70 (224)
Q Consensus 56 Lv~slviavgGcWfA 70 (224)
.+++++||+.-|||+
T Consensus 8 ~~~~~~~~~~~~~~~ 22 (508)
T PRK12705 8 VILLLLIGLLLGVLV 22 (508)
T ss_pred HHHHHHHHHHHHHHH
Confidence 345555565555554
No 104
>PHA02047 phage lambda Rz1-like protein
Probab=66.78 E-value=69 Score=26.06 Aligned_cols=37 Identities=11% Similarity=0.163 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhch----HHHHHHHHHhhHh
Q psy11615 54 YILGTLILIALTICWYVYRQKESS----QQHLRRMMKDMEG 90 (224)
Q Consensus 54 i~Lv~slviavgGcWfAy~Qnr~S----k~hl~~Mmkdle~ 90 (224)
|+.+.+||...+|.-|+|.|.-.. ....+++..+||.
T Consensus 5 ~~~~~~~v~~~~g~~y~~~~~~r~~g~~h~~a~~la~qLE~ 45 (101)
T PHA02047 5 IVAILVLVVVALGASYGFVQSYRALGIAHEEAKRQTARLEA 45 (101)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555556666777773333 3344444444443
No 105
>KOG0161|consensus
Probab=66.64 E-value=1.1e+02 Score=35.48 Aligned_cols=119 Identities=23% Similarity=0.271 Sum_probs=64.8
Q ss_pred hhchHHHHHHHHHHHHHHhcccccccchhhhhcccccc----------cCCCCCCchhHHHHHHHHHHHHHHHHHHhhhh
Q psy11615 4 YFMAEKQLQQAREACEKLRKKRSSLVGAFVSTHGKSID----------DVDRNSTSHVKDYILGTLILIALTICWYVYRQ 73 (224)
Q Consensus 4 ~~~a~~ql~~a~e~~eki~kKr~s~~gsf~~aH~~s~D----------~VDRer~~~wKDi~Lv~slviavgGcWfAy~Q 73 (224)
+..++..+...-|+.|..+|.=...+-++-. ++| .+++.-..-..+++..+... .-..==+..|
T Consensus 1560 r~e~er~l~ek~Ee~E~~rk~~~~~i~~~q~----~Le~E~r~k~e~~r~KKkle~di~elE~~ld~a--nk~~~d~~K~ 1633 (1930)
T KOG0161|consen 1560 RSEIERRLQEKDEEIEELRKNLQRQLESLQA----ELEAETRSKSEALRSKKKLEGDINELEIQLDHA--NKANEDAQKQ 1633 (1930)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH----hhhHHHHHHHHHHhhhhhhhcchHHHHHHHHHH--HHhhHHHHHH
Confidence 4556777788888888877764444333322 122 12222223344555444332 2222223344
Q ss_pred hhchHHHHHHHHHhhHhHHHHHHH-----------HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy11615 74 KESSQQHLRRMMKDMEGLQRAELD-----------LANLQKELERARQEQENAASEKIKLERRLQE 128 (224)
Q Consensus 74 nr~Sk~hl~~Mmkdle~Lq~AE~s-----------l~dlQ~~Le~aqee~~~v~~EK~~LE~kl~~ 128 (224)
.+.-+..++-+..+++..+++.+. +.-++.+++..+....++...|.++|.++.+
T Consensus 1634 lkk~q~~~k~lq~~~e~~~~~~~e~~~q~~~aerr~~~l~~E~eeL~~~l~~~~Rarr~aE~e~~E 1699 (1930)
T KOG0161|consen 1634 LKKLQAQLKELQRELEDAQRAREELLEQLAEAERRLAALQAELEELREKLEALERARRQAELELEE 1699 (1930)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 444444444455555555555444 4456667777777777778888888888776
No 106
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=66.26 E-value=1.6e+02 Score=30.14 Aligned_cols=8 Identities=0% Similarity=0.360 Sum_probs=2.8
Q ss_pred HHHHHHhh
Q psy11615 81 LRRMMKDM 88 (224)
Q Consensus 81 l~~Mmkdl 88 (224)
+..+-+.+
T Consensus 679 ~~~l~~~~ 686 (1179)
T TIGR02168 679 IEELEEKI 686 (1179)
T ss_pred HHHHHHHH
Confidence 33333333
No 107
>PF13268 DUF4059: Protein of unknown function (DUF4059)
Probab=66.09 E-value=8.4 Score=29.52 Aligned_cols=28 Identities=11% Similarity=0.465 Sum_probs=24.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhhhch
Q psy11615 50 HVKDYILGTLILIALTICWYVYRQKESS 77 (224)
Q Consensus 50 ~wKDi~Lv~slviavgGcWfAy~Qnr~S 77 (224)
|.+.+.+.+..|+.++|.|+.++-.++-
T Consensus 9 YlqgL~ls~i~V~~~~~~wi~~Ra~~~~ 36 (72)
T PF13268_consen 9 YLQGLLLSSILVLLVSGIWILWRALRKK 36 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 6788999999999999999999876553
No 108
>PRK03918 chromosome segregation protein; Provisional
Probab=63.78 E-value=1.7e+02 Score=29.66 Aligned_cols=18 Identities=28% Similarity=0.263 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy11615 151 CQLKQEIELLRNELQRAE 168 (224)
Q Consensus 151 s~l~eELe~vR~aL~~AE 168 (224)
..++.+++.++..+...+
T Consensus 662 ~~l~~~~~~l~~~l~~l~ 679 (880)
T PRK03918 662 EELREEYLELSRELAGLR 679 (880)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 109
>KOG0250|consensus
Probab=62.94 E-value=1.2e+02 Score=33.49 Aligned_cols=60 Identities=25% Similarity=0.220 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHhhhhhcCCCCChhhHH-HHhhHHHHHHHHHHHhHhhHHHHHHHHHHHHHhhc
Q psy11615 154 KQEIELLRNELQRAEGELEDRCWAPPPGLQH-WLQLTHEIENKAYVKKKLMAEKQLQQAREARFDRG 219 (224)
Q Consensus 154 ~eELe~vR~aL~~AE~eLe~~~ws~P~~LQ~-wLQlT~EvE~q~y~~Kk~~AekQL~~AkE~~EKik 219 (224)
++||--.=..++.+|.+.-. -+.-.+ .|.-++.+|+.+++.++--++ +..-|...|.+.+
T Consensus 796 ~~el~~r~dk~~s~e~~~~H-----yE~~~K~~l~~l~~~E~~~~~~e~~~~e-~~~ka~~~cp~~~ 856 (1074)
T KOG0250|consen 796 KEELKLREDKLRSAEDEKRH-----YEDKLKSRLEELKQKEVEKVNLEEPRAE-EDQKARTECPEEG 856 (1074)
T ss_pred HHHHHHHHHHHhhhhhhhhh-----HHHHHHHhhHHHHHHHHHHHhhhcchhh-hCchhhhhCcccc
Confidence 45555444455555554322 233344 888999999999998776554 3555666665554
No 110
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=62.59 E-value=55 Score=29.47 Aligned_cols=22 Identities=18% Similarity=0.452 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhh
Q psy11615 53 DYILGTLILIALTICWYVYRQK 74 (224)
Q Consensus 53 Di~Lv~slviavgGcWfAy~Qn 74 (224)
-.++.+++++|+++-|++.-|=
T Consensus 7 ~~~~~~~~l~~~~~~~~~~a~a 28 (263)
T PRK10803 7 HHLLSLSLLVGVAAPWAAFAQA 28 (263)
T ss_pred HHHHHHHHHHHHhhhHHHhcCC
Confidence 3445556666666667666543
No 111
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=62.45 E-value=1.4e+02 Score=28.27 Aligned_cols=122 Identities=23% Similarity=0.204 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHH-------HHH---HHHH-----hhhhcccccccc-cccchhHHHHHHHHHHHHHH
Q psy11615 98 LANLQKELERARQEQENAASEKIKL-------ERR---LQEH-----QALQGDASDLKS-SSAFSDLEVCQLKQEIELLR 161 (224)
Q Consensus 98 l~dlQ~~Le~aqee~~~v~~EK~~L-------E~k---l~~~-----~~ak~ea~rl~~-~r~~sd~Els~l~eELe~vR 161 (224)
+..||+++-...+|+..--.|-.+| |++ |-.. ..|......|.+ +..-.+ +..+..+||.++.
T Consensus 162 le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~dcv~QL~~An~qia~LseELa~k~E-e~~rQQEEIt~Ll 240 (306)
T PF04849_consen 162 LEALQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQLVLDCVKQLSEANQQIASLSEELARKTE-ENRRQQEEITSLL 240 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 5677777777776666554443333 322 2211 123333333333 111011 2222348888888
Q ss_pred HHHHHHHhhhhhcCCCCChhhHHHHhhHHH------HHHHHHHHhHhhHHHHHHHHHHHHHhhccc
Q psy11615 162 NELQRAEGELEDRCWAPPPGLQHWLQLTHE------IENKAYVKKKLMAEKQLQQAREARFDRGKC 221 (224)
Q Consensus 162 ~aL~~AE~eLe~~~ws~P~~LQ~wLQlT~E------vE~q~y~~Kk~~AekQL~~AkE~~EKikK~ 221 (224)
+.+-..+..+.. .-+--+.|++-|+.+.+ .|++-+.-|=..+..=|..|.|..-++|++
T Consensus 241 sqivdlQ~r~k~-~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~~~mL~EaQEElk~lR~~ 305 (306)
T PF04849_consen 241 SQIVDLQQRCKQ-LAAENEELQQHLQASKESQRQLQAELQELQDKYAECMAMLHEAQEELKTLRKR 305 (306)
T ss_pred HHHHHHHHHHHH-HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 888777766643 34446788888888776 577777778888888899999999999886
No 112
>PHA02562 46 endonuclease subunit; Provisional
Probab=61.78 E-value=1.3e+02 Score=28.83 Aligned_cols=98 Identities=12% Similarity=0.177 Sum_probs=46.1
Q ss_pred hhhchHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhcccccccccccchhHHHHH
Q psy11615 73 QKESSQQHLRRMMKDMEGLQRAELDLANLQKELERARQEQENAASEKIKLERRLQEHQALQGDASDLKSSSAFSDLEVCQ 152 (224)
Q Consensus 73 Qnr~Sk~hl~~Mmkdle~Lq~AE~sl~dlQ~~Le~aqee~~~v~~EK~~LE~kl~~~~~ak~ea~rl~~~r~~sd~Els~ 152 (224)
+...-+..++.+...+..++.....+.+++.++++.+..-.+....-..+.++... .+.+-..|.+.....+.++.+
T Consensus 307 ~i~~l~~~l~~l~~~i~~~~~~~~~~~~~~~~i~el~~~i~~~~~~i~~~~~~~~~---l~~ei~~l~~~~~~~~~~l~~ 383 (562)
T PHA02562 307 KLKELQHSLEKLDTAIDELEEIMDEFNEQSKKLLELKNKISTNKQSLITLVDKAKK---VKAAIEELQAEFVDNAEELAK 383 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhhhchHHHHHH
Confidence 33344555555555555555555555555555555544333322221111111111 222222232222223346666
Q ss_pred HHHHHHHHHHHHHHHHhhhhh
Q psy11615 153 LKQEIELLRNELQRAEGELED 173 (224)
Q Consensus 153 l~eELe~vR~aL~~AE~eLe~ 173 (224)
+.++|..++.....-+++...
T Consensus 384 l~~~l~~~~~~~~~~~ke~~~ 404 (562)
T PHA02562 384 LQDELDKIVKTKSELVKEKYH 404 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777666666544
No 113
>TIGR01386 cztS_silS_copS heavy metal sensor kinase. Members of this family contain a sensor histidine kinase domain (Pfam:PF00512) and a domain found in bacterial signal proteins (Pfam:PF00672). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc.
Probab=61.73 E-value=79 Score=28.18 Aligned_cols=23 Identities=22% Similarity=0.186 Sum_probs=13.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHh
Q psy11615 90 GLQRAELDLANLQKELERARQEQ 112 (224)
Q Consensus 90 ~Lq~AE~sl~dlQ~~Le~aqee~ 112 (224)
.+...-.+|..|..+|.....+.
T Consensus 219 Ei~~l~~~~n~m~~~l~~~~~~~ 241 (457)
T TIGR01386 219 ELRELAQSFNAMLGRLEDAFQRL 241 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666666666655443
No 114
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=61.30 E-value=40 Score=31.24 Aligned_cols=38 Identities=34% Similarity=0.518 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy11615 91 LQRAELDLANLQKELERARQEQENAASEKIKLERRLQE 128 (224)
Q Consensus 91 Lq~AE~sl~dlQ~~Le~aqee~~~v~~EK~~LE~kl~~ 128 (224)
|...+..|.+++.+|...+.+......+|+.|+.++..
T Consensus 237 L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~ 274 (344)
T PF12777_consen 237 LAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEE 274 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556666666666666666666666666665544
No 115
>PRK06531 yajC preprotein translocase subunit YajC; Validated
Probab=61.20 E-value=11 Score=30.59 Aligned_cols=32 Identities=16% Similarity=0.355 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHhhh-hhhchHHHHHHHHH
Q psy11615 54 YILGTLILIALTICWYVYR-QKESSQQHLRRMMK 86 (224)
Q Consensus 54 i~Lv~slviavgGcWfAy~-Qnr~Sk~hl~~Mmk 86 (224)
+.+++.+++-++..||.++ |+|..|.| ..|+.
T Consensus 3 ~~~il~~vv~~~i~yf~iRPQkKr~Ke~-~em~~ 35 (113)
T PRK06531 3 IPTIIMFVVMLGLIFFMQRQQKKQAQER-QNQLN 35 (113)
T ss_pred hHHHHHHHHHHHHHHheechHHHHHHHH-HHHHH
Confidence 4555555566666777664 44444444 44443
No 116
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=61.00 E-value=63 Score=29.99 Aligned_cols=88 Identities=24% Similarity=0.399 Sum_probs=41.4
Q ss_pred HHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHH
Q psy11615 79 QHLRRMMKDMEGLQRAELDLANLQKELERARQEQENAASEKIKLERRLQEHQALQGDASDLKSSSAFSDLEVCQLKQEIE 158 (224)
Q Consensus 79 ~hl~~Mmkdle~Lq~AE~sl~dlQ~~Le~aqee~~~v~~EK~~LE~kl~~~~~ak~ea~rl~~~r~~sd~Els~l~eELe 158 (224)
..+....+.++.|...| .++.++|++++.+...+..|-..||.+..+.. +.|..-.+ ....-..++.+..+|..
T Consensus 43 ~~~~~~~~el~~le~Ee---~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~--~eE~~~~~-~~n~~~~~l~~~~~e~~ 116 (314)
T PF04111_consen 43 EDIEELEEELEKLEQEE---EELLQELEELEKEREELDQELEELEEELEELD--EEEEEYWR-EYNELQLELIEFQEERD 116 (314)
T ss_dssp H--HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 33444455444444433 34444555555555555555555555544411 11111111 11122334444567777
Q ss_pred HHHHHHHHHHhhhh
Q psy11615 159 LLRNELQRAEGELE 172 (224)
Q Consensus 159 ~vR~aL~~AE~eLe 172 (224)
.+...+.-+...|+
T Consensus 117 sl~~q~~~~~~~L~ 130 (314)
T PF04111_consen 117 SLKNQYEYASNQLD 130 (314)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 77777777766554
No 117
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=60.36 E-value=1.1e+02 Score=28.26 Aligned_cols=30 Identities=20% Similarity=0.368 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHhhhh---------hcC-CCCChhhH
Q psy11615 154 KQEIELLRNELQRAEGELE---------DRC-WAPPPGLQ 183 (224)
Q Consensus 154 ~eELe~vR~aL~~AE~eLe---------~~~-ws~P~~LQ 183 (224)
+++|..+..+|..|+..|. -++ -.||++..
T Consensus 81 ~~~L~~a~P~L~~A~~al~~l~k~di~Eiks~~~PP~~V~ 120 (344)
T PF12777_consen 81 EEELAEAEPALEEAQEALKSLDKSDISEIKSYANPPEAVK 120 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHCS-HHHHHHHHHSSS--HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhCCCcHHHH
Confidence 4889999999999987663 233 56666554
No 118
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=59.93 E-value=18 Score=24.61 Aligned_cols=25 Identities=12% Similarity=0.251 Sum_probs=18.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhh
Q psy11615 50 HVKDYILGTLILIALTICWYVYRQK 74 (224)
Q Consensus 50 ~wKDi~Lv~slviavgGcWfAy~Qn 74 (224)
..+-+.++++.++-+|.+|++|.-+
T Consensus 9 ~~~~~~~v~~~~~F~gi~~w~~~~~ 33 (49)
T PF05545_consen 9 FARSIGTVLFFVFFIGIVIWAYRPR 33 (49)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccc
Confidence 4455677777788888899999644
No 119
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=59.27 E-value=1.9e+02 Score=28.62 Aligned_cols=63 Identities=27% Similarity=0.287 Sum_probs=35.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHh-hhhcccccccccccchhHHHHHHHHHHHHHHHHHHHHHhh
Q psy11615 104 ELERARQEQENAASEKIKLERRLQEHQ-ALQGDASDLKSSSAFSDLEVCQLKQEIELLRNELQRAEGE 170 (224)
Q Consensus 104 ~Le~aqee~~~v~~EK~~LE~kl~~~~-~ak~ea~rl~~~r~~sd~Els~l~eELe~vR~aL~~AE~e 170 (224)
+|++.+.+..++..+|..-..+-.+-. .++..+.+..++ -.||.++++.|+.++.+-..|+.+
T Consensus 138 EL~~lr~e~~~~~~~k~~A~~~aeea~~~a~~~~~kve~L----~~Ei~~lke~l~~~~~a~~eAeee 201 (522)
T PF05701_consen 138 ELEKLRQELASALDAKNAALKQAEEAVSAAEENEEKVEEL----SKEIIALKESLESAKLAHIEAEEE 201 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444555555555554444422 233333333322 227888889999998888888754
No 120
>PRK12704 phosphodiesterase; Provisional
Probab=59.20 E-value=2e+02 Score=28.76 Aligned_cols=7 Identities=14% Similarity=-0.130 Sum_probs=3.0
Q ss_pred HHHHHhh
Q psy11615 65 TICWYVY 71 (224)
Q Consensus 65 gGcWfAy 71 (224)
+|++++|
T Consensus 16 iG~~ig~ 22 (520)
T PRK12704 16 VGAVIGY 22 (520)
T ss_pred HHHHHHH
Confidence 4444444
No 121
>KOG0804|consensus
Probab=59.04 E-value=1.2e+02 Score=30.70 Aligned_cols=55 Identities=24% Similarity=0.277 Sum_probs=45.4
Q ss_pred hhhchHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy11615 73 QKESSQQHLRRMMKDMEGLQRAELDLANLQKELERARQEQENAASEKIKLERRLQEH 129 (224)
Q Consensus 73 Qnr~Sk~hl~~Mmkdle~Lq~AE~sl~dlQ~~Le~aqee~~~v~~EK~~LE~kl~~~ 129 (224)
|+++--.++.+|-+ ..|....+-|.++-.+.-....++..+..+|+.+|+++...
T Consensus 333 qr~y~e~~~~e~~q--sqlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~ 387 (493)
T KOG0804|consen 333 QRKYYEQIMSEYEQ--SQLENQKQYYELLITEADSLKQESSDLEAEKKIVERKLQQL 387 (493)
T ss_pred HHHHHHHHHHHHHH--HHHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHH
Confidence 55555688888887 77888888888888888888888999999999999998874
No 122
>PRK03918 chromosome segregation protein; Provisional
Probab=58.80 E-value=2.1e+02 Score=29.05 Aligned_cols=15 Identities=13% Similarity=0.151 Sum_probs=7.5
Q ss_pred ccccchhhhhccccc
Q psy11615 26 SSLVGAFVSTHGKSI 40 (224)
Q Consensus 26 ~s~~gsf~~aH~~s~ 40 (224)
+.|++++.+.+|.+-
T Consensus 124 ~~f~~~~~~~Qg~~~ 138 (880)
T PRK03918 124 HVFLNAIYIRQGEID 138 (880)
T ss_pred HHhceeEEEeccchH
Confidence 344455555666443
No 123
>PF07047 OPA3: Optic atrophy 3 protein (OPA3); InterPro: IPR010754 OPA3 deficiency causes type III 3-methylglutaconic aciduria (MGA) in humans. This disease manifests with early bilateral optic atrophy, spasticity, extrapyramidal dysfunction, ataxia, and cognitive deficits, but normal longevity []. This family consists of several optic atrophy 3 (OPA3) proteins and related proteins from other eukaryotic species, the function is unknown.
Probab=58.45 E-value=51 Score=26.92 Aligned_cols=32 Identities=16% Similarity=0.253 Sum_probs=18.1
Q ss_pred HHHHHHHHHhhhhhhchHHHHHHHHHhhHhHH
Q psy11615 61 LIALTICWYVYRQKESSQQHLRRMMKDMEGLQ 92 (224)
Q Consensus 61 viavgGcWfAy~Qnr~Sk~hl~~Mmkdle~Lq 92 (224)
|.+...+|-++++.++++..-...-.+++.|+
T Consensus 87 Va~~li~~E~~Rs~~ke~~Ke~~~~~~l~~L~ 118 (134)
T PF07047_consen 87 VAAGLIIYEYWRSARKEAKKEEELQERLEELE 118 (134)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 33444456666676666666555555555553
No 124
>PF04375 HemX: HemX; InterPro: IPR007470 The majority of proteins in this family are annotated as uroporphyrin-III C-methyltransferase (2.1.1.107 from EC) []; however, there is no direct evidence to support this annotation for these proteins, which come from mainly pathogenic Gram-negative organisms. There is some evidence to suggest that the proteins are membrane anchored as they have a predicted N-terminal signal peptide and transmembrane domain and may be involved in haem transport [].
Probab=58.38 E-value=1.7e+02 Score=27.67 Aligned_cols=24 Identities=21% Similarity=-0.067 Sum_probs=13.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHhhh
Q psy11615 49 SHVKDYILGTLILIALTICWYVYR 72 (224)
Q Consensus 49 ~~wKDi~Lv~slviavgGcWfAy~ 72 (224)
+.+.-+.++.++|++..|.=|+|.
T Consensus 27 ~~~~~l~~lalll~~alg~~~~~~ 50 (372)
T PF04375_consen 27 SGGSGLALLALLLALALGAGGWYW 50 (372)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHH
Confidence 333345555555555666667777
No 125
>COG2959 HemX Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=57.81 E-value=1e+02 Score=30.32 Aligned_cols=41 Identities=17% Similarity=0.144 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhchHHHHHHHHHhhHhHHHH
Q psy11615 54 YILGTLILIALTICWYVYRQKESSQQHLRRMMKDMEGLQRA 94 (224)
Q Consensus 54 i~Lv~slviavgGcWfAy~Qnr~Sk~hl~~Mmkdle~Lq~A 94 (224)
+.+++-|.+|.||..|...|+-.-...+.-.-.-+..++.|
T Consensus 38 ~all~aLgLGagg~~f~QqQ~~~~~~~l~a~~~q~~~~~~a 78 (391)
T COG2959 38 AALLLALGLGAGGYYFGQQQNVLQTQELQALQQQLKALQLA 78 (391)
T ss_pred HHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 34444455566666666667666666665555555544333
No 126
>PF13801 Metal_resist: Heavy-metal resistance; PDB: 3EPV_C 2Y3D_A 2Y3H_D 2Y3G_B 2Y3B_A 2Y39_A 3LAY_H.
Probab=56.93 E-value=74 Score=23.18 Aligned_cols=36 Identities=22% Similarity=0.064 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHHHHhhhhhhchHHHH--HHHHHhhHhH
Q psy11615 56 LGTLILIALTICWYVYRQKESSQQHL--RRMMKDMEGL 91 (224)
Q Consensus 56 Lv~slviavgGcWfAy~Qnr~Sk~hl--~~Mmkdle~L 91 (224)
+.+.++++++|-|+.+.-...-..+. ..++.+.-+|
T Consensus 5 l~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~L 42 (125)
T PF13801_consen 5 LNLLLAGALAGAAAAGPGPGGPGGPRRRHPMLADMLNL 42 (125)
T ss_dssp ----------------------TTHHHHHHHHHHHS-T
T ss_pred HHHHHHHHHHHHHhccCCCCCCCCCcccchhhhhhcCC
Confidence 44555555566666555444333322 3344444444
No 127
>PF06298 PsbY: Photosystem II protein Y (PsbY); InterPro: IPR009388 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbY found in PSII. In higher plants, two related PsbY proteins exist, PsbY-1 and PsbY-2, which appear to function as a heterodimer. In spinach and Arabidopsis, these two proteins arise from a single-copy nuclear gene that is processed in the chloroplast. By contrast, prokaryotic and organellar chromosomes encode a single PsbY protein, as found in cyanobacteria and red algae, indicating a duplication event in the evolution of higher plants []. PsbY has two low manganese-dependent activities: a catalase-like activity and an L-arginine metabolising activity that converts L-arginine into ornithine and urea []. In addition, a redox-active group is thought to be present in the protein. In cyanobacteria, PsbY deletion mutants have a slightly impaired PSII that is less capable of coping with low levels of calcium ions than the wild-type.; GO: 0030145 manganese ion binding, 0015979 photosynthesis, 0009523 photosystem II, 0016021 integral to membrane
Probab=56.77 E-value=20 Score=24.18 Aligned_cols=32 Identities=22% Similarity=0.442 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHhhhhhhchHHHHHHHHH
Q psy11615 55 ILGTLILIALTICWYVYRQKESSQQHLRRMMK 86 (224)
Q Consensus 55 ~Lv~slviavgGcWfAy~Qnr~Sk~hl~~Mmk 86 (224)
.+++++.+.+.+.|..|.=-+-+-.++.+|.+
T Consensus 5 ~liVl~Pil~A~gWa~fNIg~~Al~Q~~~~~~ 36 (36)
T PF06298_consen 5 LLIVLLPILPAAGWALFNIGRAALNQLQRMLN 36 (36)
T ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhC
Confidence 36777788888999999998988888888763
No 128
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=56.48 E-value=1.4e+02 Score=26.25 Aligned_cols=8 Identities=13% Similarity=0.318 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q psy11615 103 KELERARQ 110 (224)
Q Consensus 103 ~~Le~aqe 110 (224)
++..+...
T Consensus 42 ~~id~~~~ 49 (251)
T PF11932_consen 42 KRIDQWDD 49 (251)
T ss_pred HHHHHHHH
Confidence 33333333
No 129
>PRK02224 chromosome segregation protein; Provisional
Probab=56.41 E-value=90 Score=31.87 Aligned_cols=49 Identities=29% Similarity=0.389 Sum_probs=21.9
Q ss_pred hHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy11615 77 SQQHLRRMMKDMEGLQRAELDLANLQKELERARQEQENAASEKIKLERRLQE 128 (224)
Q Consensus 77 Sk~hl~~Mmkdle~Lq~AE~sl~dlQ~~Le~aqee~~~v~~EK~~LE~kl~~ 128 (224)
....+..+-+++..|+ ....++.+.++.+...-.+...+...++.++.+
T Consensus 347 ~~~~~~~le~~~~~l~---~~~~~l~~~~~~~~~~l~~~~~~l~~l~~el~e 395 (880)
T PRK02224 347 LREDADDLEERAEELR---EEAAELESELEEAREAVEDRREEIEELEEEIEE 395 (880)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444544443 233344444444444444444444445554444
No 130
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=56.25 E-value=1.3e+02 Score=30.67 Aligned_cols=45 Identities=29% Similarity=0.411 Sum_probs=18.9
Q ss_pred HHHHHHHHhhHhHHHH----HHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q psy11615 79 QHLRRMMKDMEGLQRA----ELDLANLQKELERARQEQENAASEKIKLE 123 (224)
Q Consensus 79 ~hl~~Mmkdle~Lq~A----E~sl~dlQ~~Le~aqee~~~v~~EK~~LE 123 (224)
..+..+++..+.|.++ +.....|+++++..+.+-.....+-..|+
T Consensus 143 ~qlE~~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~ 191 (546)
T PF07888_consen 143 NQLEECQKEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLK 191 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555332 23334444444444444433333333333
No 131
>PF11460 DUF3007: Protein of unknown function (DUF3007); InterPro: IPR021562 This is a family of uncharacterised proteins found in bacteria and eukaryotes.
Probab=55.60 E-value=32 Score=28.00 Aligned_cols=57 Identities=19% Similarity=0.096 Sum_probs=30.5
Q ss_pred CCCCCCchhHHHHHHHHHHHHHHHHHHhhhhhhchHHHHHHHHHhhHhHHHHHHHH-----HHHHHHHHHH
Q psy11615 43 VDRNSTSHVKDYILGTLILIALTICWYVYRQKESSQQHLRRMMKDMEGLQRAELDL-----ANLQKELERA 108 (224)
Q Consensus 43 VDRer~~~wKDi~Lv~slviavgGcWfAy~Qnr~Sk~hl~~Mmkdle~Lq~AE~sl-----~dlQ~~Le~a 108 (224)
+|.-.---|-+.++++.+|+=++..-| -+- ++=|.=++.+++=|.+. +++|+||+..
T Consensus 29 ~d~~~AGi~sq~~lv~glvgW~~sYlf-RV~--------t~~MTy~~Q~k~Ye~a~~~~~~~~lqkRle~l 90 (104)
T PF11460_consen 29 LDSLSAGIWSQALLVLGLVGWVSSYLF-RVV--------TGKMTYMQQRKDYEEAVDQLTNEELQKRLEEL 90 (104)
T ss_pred CCchhhhHHHHHHHHHHHHHHHhHHHh-hhc--------cCCCcHHHHHHHHHHHHHHHhHHHHHHHHHhC
Confidence 344444567777666665444444444 222 22255566666666665 4566666553
No 132
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=55.26 E-value=1.4e+02 Score=25.96 Aligned_cols=32 Identities=22% Similarity=0.478 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhhc---CCCCChhhHH
Q psy11615 153 LKQEIELLRNELQRAEGELEDR---CWAPPPGLQH 184 (224)
Q Consensus 153 l~eELe~vR~aL~~AE~eLe~~---~ws~P~~LQ~ 184 (224)
|+.-|..+...|...+.+|..- +-..|.++..
T Consensus 148 LEkKl~~l~~~lE~keaqL~evl~~~nldp~~~~~ 182 (201)
T PF13851_consen 148 LEKKLQALSEQLEKKEAQLNEVLAAANLDPAALSQ 182 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 4788888888888888888632 5566666553
No 133
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=54.69 E-value=25 Score=26.78 Aligned_cols=25 Identities=28% Similarity=0.284 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHhhhhhhchHH
Q psy11615 55 ILGTLILIALTICWYVYRQKESSQQ 79 (224)
Q Consensus 55 ~Lv~slviavgGcWfAy~Qnr~Sk~ 79 (224)
.-++.|++|....|+-|+.++.+-.
T Consensus 10 livf~ifVap~WL~lHY~sk~~~~~ 34 (75)
T PF06667_consen 10 LIVFMIFVAPIWLILHYRSKWKSSQ 34 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCC
Confidence 3456777888888999987766543
No 134
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=54.30 E-value=77 Score=31.64 Aligned_cols=68 Identities=21% Similarity=0.256 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHhhhhhhchHH---HHHHHHHhhHhH----HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy11615 59 LILIALTICWYVYRQKESSQQ---HLRRMMKDMEGL----QRAELDLANLQKELERARQEQENAASEKIKLERRLQE 128 (224)
Q Consensus 59 slviavgGcWfAy~Qnr~Sk~---hl~~Mmkdle~L----q~AE~sl~dlQ~~Le~aqee~~~v~~EK~~LE~kl~~ 128 (224)
+|--+.-|+.|.+. ++... .+..+.+||+.+ .-|+.......-+-+++..|-+++-.|++..++++..
T Consensus 53 liSA~tLailf~~~--~~lr~gVfqlddi~~qlr~~rtel~~a~~~k~~~e~er~~~~~El~~~r~e~~~v~~~~~~ 127 (499)
T COG4372 53 LISAATLAILFLLN--RNLRSGVFQLDDIRPQLRALRTELGTAQGEKRAAETEREAARSELQKARQEREAVRQELAA 127 (499)
T ss_pred hhhHHHHHHHHHhh--hhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344556666654 33333 344455555433 4455555555555555555555666666666555554
No 135
>PRK04654 sec-independent translocase; Provisional
Probab=54.28 E-value=1.1e+02 Score=27.89 Aligned_cols=13 Identities=15% Similarity=0.383 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHH
Q psy11615 98 LANLQKELERARQ 110 (224)
Q Consensus 98 l~dlQ~~Le~aqe 110 (224)
+.+|++.|++.+.
T Consensus 56 ~~ELrk~l~~~~~ 68 (214)
T PRK04654 56 AEELKRSLQDVQA 68 (214)
T ss_pred HHHHHHHHHHHHH
Confidence 4455555555444
No 136
>KOG2991|consensus
Probab=54.08 E-value=1.2e+02 Score=28.87 Aligned_cols=121 Identities=21% Similarity=0.229 Sum_probs=80.2
Q ss_pred HHHHhhHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH---h-h----hhcccccccc--cccchhHHHHH
Q psy11615 83 RMMKDMEGLQRAELDLANLQKELERARQEQENAASEKIKLERRLQEH---Q-A----LQGDASDLKS--SSAFSDLEVCQ 152 (224)
Q Consensus 83 ~Mmkdle~Lq~AE~sl~dlQ~~Le~aqee~~~v~~EK~~LE~kl~~~---~-~----ak~ea~rl~~--~r~~sd~Els~ 152 (224)
-+..|.++|+.-|.+|..- ++.|+..--.....-.+-|++|.+- | + .+-.+-.||+ +.+.-.++.+|
T Consensus 105 ll~d~i~nLk~se~~lkqQ---~~~a~RrE~ilv~rlA~kEQEmqe~~sqi~~lK~qq~Ps~~qlR~~llDPAinl~F~r 181 (330)
T KOG2991|consen 105 LLSDDITNLKESEEKLKQQ---QQEAARRENILVMRLATKEQEMQECTSQIQYLKQQQQPSVAQLRSTLLDPAINLFFLR 181 (330)
T ss_pred hhHHHHHhhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHhhChHHHHHHHH
Confidence 4567889998888877653 3444433334444556678888873 2 1 2223344554 66778888999
Q ss_pred HHHHHHHHHHHHHHHHhhhhhcCCCCChhhHHHH--------------------hhHHHHHHHHHHHhHhhHHH
Q psy11615 153 LKQEIELLRNELQRAEGELEDRCWAPPPGLQHWL--------------------QLTHEIENKAYVKKKLMAEK 206 (224)
Q Consensus 153 l~eELe~vR~aL~~AE~eLe~~~ws~P~~LQ~wL--------------------QlT~EvE~q~y~~Kk~~Aek 206 (224)
|+-||++-...|..|.-+|...-++|-.--.+-| ..-|++|...-..|.+++|.
T Consensus 182 lK~ele~tk~Klee~QnelsAwkFTPdS~tGK~LMAKCR~L~qENeElG~q~s~Gria~Le~eLAmQKs~seEl 255 (330)
T KOG2991|consen 182 LKGELEQTKDKLEEAQNELSAWKFTPDSKTGKMLMAKCRTLQQENEELGHQASEGRIAELEIELAMQKSQSEEL 255 (330)
T ss_pred HHHHHHHHHHHHHHHHhhhheeeecCCCcchHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHHhhHHHH
Confidence 9999999999999999999876666653322222 23466777777777777764
No 137
>COG1862 YajC Preprotein translocase subunit YajC [Intracellular trafficking and secretion]
Probab=53.30 E-value=24 Score=28.07 Aligned_cols=35 Identities=9% Similarity=0.356 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHH-hhhhhhchHHHHHHHHHh
Q psy11615 53 DYILGTLILIALTICWY-VYRQKESSQQHLRRMMKD 87 (224)
Q Consensus 53 Di~Lv~slviavgGcWf-Ay~Qnr~Sk~hl~~Mmkd 87 (224)
.+.+++.+|+.++..|| .++..+.......+|+..
T Consensus 8 ~~~~ll~~vl~~~ifyFli~RPQrKr~K~~~~ml~s 43 (97)
T COG1862 8 GLVLLLPLVLIFAIFYFLIIRPQRKRMKEHQELLNS 43 (97)
T ss_pred cHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHh
Confidence 35666777777777777 555444444444455443
No 138
>PF11770 GAPT: GRB2-binding adapter (GAPT); InterPro: IPR021082 This entry represents a family of transmembrane proteins which bind the growth factor receptor-bound protein 2 (GRB2) in B cells []. In contrast to other transmembrane adaptor proteins, GAPT, which this entry represents, is not phosphorylated upon BCR ligation. It associates with GRB2 constitutively through its proline-rich region [].
Probab=52.98 E-value=5.4 Score=34.53 Aligned_cols=18 Identities=22% Similarity=0.368 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHhhh
Q psy11615 55 ILGTLILIALTICWYVYR 72 (224)
Q Consensus 55 ~Lv~slviavgGcWfAy~ 72 (224)
.|+++++.|||-.|+.-+
T Consensus 18 Ll~lLl~cgiGcvwhwkh 35 (158)
T PF11770_consen 18 LLLLLLLCGIGCVWHWKH 35 (158)
T ss_pred HHHHHHHHhcceEEEeec
Confidence 345556666666677444
No 139
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=52.84 E-value=2.6e+02 Score=28.15 Aligned_cols=34 Identities=18% Similarity=0.178 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhc-CCCCChhh
Q psy11615 149 EVCQLKQEIELLRNELQRAEGELEDR-CWAPPPGL 182 (224)
Q Consensus 149 Els~l~eELe~vR~aL~~AE~eLe~~-~ws~P~~L 182 (224)
+..+|+.++..++..+.+++..+..- +-..|.+|
T Consensus 263 ~r~~Le~ei~~le~e~~e~~~~l~~l~~~~~p~~l 297 (650)
T TIGR03185 263 EREQLERQLKEIEAARKANRAQLRELAADPLPLLL 297 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHhh
Confidence 34567889999999998888888544 33445443
No 140
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=52.57 E-value=1.5e+02 Score=25.52 Aligned_cols=17 Identities=18% Similarity=0.327 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy11615 92 QRAELDLANLQKELERA 108 (224)
Q Consensus 92 q~AE~sl~dlQ~~Le~a 108 (224)
+++-.+.+.|+.+++.+
T Consensus 30 ~~~~~~~~~l~~~i~~~ 46 (302)
T PF10186_consen 30 QQLKEENEELRRRIEEI 46 (302)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333444444443
No 141
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=51.41 E-value=1.9e+02 Score=26.78 Aligned_cols=63 Identities=22% Similarity=0.241 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhchHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy11615 54 YILGTLILIALTICWYVYRQKESSQQHLRRMMKDMEGLQRAELDLANLQKELERARQEQENAASEKIKLERRLQE 128 (224)
Q Consensus 54 i~Lv~slviavgGcWfAy~Qnr~Sk~hl~~Mmkdle~Lq~AE~sl~dlQ~~Le~aqee~~~v~~EK~~LE~kl~~ 128 (224)
+.+.+++++-++|.-++..=.. ...++..+++.. +|.+.+-..|+...+-..|-.++|.++.+
T Consensus 20 ~~~s~~~~~~l~~~~~a~~~q~----------~k~~~~~~~r~~--~L~~e~~s~Q~~~~~L~~ev~~~~~~~~s 82 (247)
T COG3879 20 WMLSISLAMLLAGVMLAAVFQT----------SKGESVRRARDL--DLVKELRSLQKKVNTLAAEVEDLENKLDS 82 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh----------ccCcchhhhhhh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777776643221 123445555544 66666666666666666677777777766
No 142
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=51.35 E-value=1.9e+02 Score=26.17 Aligned_cols=11 Identities=36% Similarity=0.480 Sum_probs=4.4
Q ss_pred hHHHHHHHHHH
Q psy11615 203 MAEKQLQQARE 213 (224)
Q Consensus 203 ~AekQL~~AkE 213 (224)
.+..++..++.
T Consensus 250 ~~~~~l~~~~~ 260 (423)
T TIGR01843 250 EAQARLAELRE 260 (423)
T ss_pred HHHHHHHHHHH
Confidence 33444444443
No 143
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=51.34 E-value=28 Score=24.30 Aligned_cols=38 Identities=16% Similarity=0.197 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHhh----hhhhchHHHHHHHHHhhHhH
Q psy11615 54 YILGTLILIALTICWYVY----RQKESSQQHLRRMMKDMEGL 91 (224)
Q Consensus 54 i~Lv~slviavgGcWfAy----~Qnr~Sk~hl~~Mmkdle~L 91 (224)
+.+++.+++|....|+.+ .+.++.+..++++-++++.|
T Consensus 26 ~~f~~G~llg~l~~~~~~~~~r~~~~~~~k~l~~le~e~~~l 67 (68)
T PF06305_consen 26 IAFLLGALLGWLLSLPSRLRLRRRIRRLRKELKKLEKELEQL 67 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344444444444444444 34444555555555555543
No 144
>PF11119 DUF2633: Protein of unknown function (DUF2633); InterPro: IPR022576 This family is conserved largely in Proteobacteria. Several members are named as YfgG. The function is not known.
Probab=51.34 E-value=22 Score=26.29 Aligned_cols=20 Identities=15% Similarity=0.208 Sum_probs=16.3
Q ss_pred CCCchhHHHHHHHHHHHHHH
Q psy11615 46 NSTSHVKDYILGTLILIALT 65 (224)
Q Consensus 46 er~~~wKDi~Lv~slviavg 65 (224)
....++--|+|++|.+|.+|
T Consensus 4 k~~~~mtriVLLISfiIlfg 23 (59)
T PF11119_consen 4 KKNSRMTRIVLLISFIILFG 23 (59)
T ss_pred cccchHHHHHHHHHHHHHHH
Confidence 34567788999999999888
No 145
>KOG4674|consensus
Probab=50.71 E-value=4.8e+02 Score=30.66 Aligned_cols=174 Identities=20% Similarity=0.243 Sum_probs=98.3
Q ss_pred hhhhcccccccCCCCC--CchhHHHHHHHHHHHHHHHHHHhhhhhhchHHHHHHHHHhhHhHHH----------------
Q psy11615 32 FVSTHGKSIDDVDRNS--TSHVKDYILGTLILIALTICWYVYRQKESSQQHLRRMMKDMEGLQR---------------- 93 (224)
Q Consensus 32 f~~aH~~s~D~VDRer--~~~wKDi~Lv~slviavgGcWfAy~Qnr~Sk~hl~~Mmkdle~Lq~---------------- 93 (224)
++..-++.+|..|.|+ .++..|+.=.+. +.. +-+..-+..+-+|+++|+.
T Consensus 617 ~~k~nss~~~~t~~~~~~e~~l~qLe~~le-----------~~~-~E~~~~~~~l~e~~~~l~~ev~~ir~~l~k~~~~~ 684 (1822)
T KOG4674|consen 617 QLKPNSSALDQTEAPRAKEKRLRQLENELE-----------SYK-KEKRENLKKLQEDFDSLQKEVTAIRSQLEKLKNEL 684 (1822)
T ss_pred cCCCCchhhcccccchhHHHHHHHHHHHHH-----------HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 5566667788777777 788888888777 222 2233445555556555544
Q ss_pred --HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhcccccccc-c------ccchhHHHHHHHHHHHHHHHHH
Q psy11615 94 --AELDLANLQKELERARQEQENAASEKIKLERRLQEHQALQGDASDLKS-S------SAFSDLEVCQLKQEIELLRNEL 164 (224)
Q Consensus 94 --AE~sl~dlQ~~Le~aqee~~~v~~EK~~LE~kl~~~~~ak~ea~rl~~-~------r~~sd~Els~l~eELe~vR~aL 164 (224)
|..-|.+|.+-++-.++++.+...-.++|..-+-+ .+...+.+.+ + -.-.+.|++.|++|=..++..-
T Consensus 685 ~fA~ekle~L~~~ie~~K~e~~tL~er~~~l~~~i~~---~~q~~~~~s~eL~~a~~k~~~le~ev~~LKqE~~ll~~t~ 761 (1822)
T KOG4674|consen 685 NLAKEKLENLEKNLELTKEEVETLEERNKNLQSTISK---QEQTVHTLSQELLSANEKLEKLEAELSNLKQEKLLLKETE 761 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33335666666666666666666666666554444 3443444433 1 1223334444444444444444
Q ss_pred HHHHhhhhhcCCCCChhhH---HHHhhHHHHHHHHHHHhHhhHHHHHHHHHHHHHhhccc
Q psy11615 165 QRAEGELEDRCWAPPPGLQ---HWLQLTHEIENKAYVKKKLMAEKQLQQAREARFDRGKC 221 (224)
Q Consensus 165 ~~AE~eLe~~~ws~P~~LQ---~wLQlT~EvE~q~y~~Kk~~AekQL~~AkE~~EKikK~ 221 (224)
.+.-.+++. +-.--..|| .=||.+++.=-.-|...|+.++.+...-.....++|++
T Consensus 762 ~rL~~e~~~-l~~e~~~L~~~l~~lQt~~~~~e~s~~~~k~~~e~~i~eL~~el~~lk~k 820 (1822)
T KOG4674|consen 762 ERLSQELEK-LSAEQESLQLLLDNLQTQKNELEESEMATKDKCESRIKELERELQKLKKK 820 (1822)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444433 111122222 23455666666677888888888888877777777765
No 146
>PRK09835 sensor kinase CusS; Provisional
Probab=49.70 E-value=1.5e+02 Score=26.90 Aligned_cols=22 Identities=18% Similarity=0.306 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q psy11615 91 LQRAELDLANLQKELERARQEQ 112 (224)
Q Consensus 91 Lq~AE~sl~dlQ~~Le~aqee~ 112 (224)
+...-.+|.+|..+|+..-+.+
T Consensus 241 l~~l~~~~n~m~~~l~~~~~~~ 262 (482)
T PRK09835 241 LEQLVLSFNHMIERIEDVFTRQ 262 (482)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455666777776655443
No 147
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=49.29 E-value=2.1e+02 Score=27.24 Aligned_cols=25 Identities=28% Similarity=0.421 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhh
Q psy11615 148 LEVCQLKQEIELLRNELQRAEGELE 172 (224)
Q Consensus 148 ~Els~l~eELe~vR~aL~~AE~eLe 172 (224)
.-+..|..|+..+|..|..++.+-.
T Consensus 229 shI~~Lr~EV~RLR~qL~~sq~e~~ 253 (310)
T PF09755_consen 229 SHIRSLRQEVSRLRQQLAASQQEHS 253 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455678999999999999887543
No 148
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=49.06 E-value=1.8e+02 Score=30.48 Aligned_cols=53 Identities=13% Similarity=0.198 Sum_probs=38.7
Q ss_pred chHHHHHHHHHhhHhH-HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy11615 76 SSQQHLRRMMKDMEGL-QRAELDLANLQKELERARQEQENAASEKIKLERRLQE 128 (224)
Q Consensus 76 ~Sk~hl~~Mmkdle~L-q~AE~sl~dlQ~~Le~aqee~~~v~~EK~~LE~kl~~ 128 (224)
.++..+...-.+++.| .+-+..-.+++++.+.+....+.+...+..||++..+
T Consensus 501 ~A~~~~~~~~~~~~~li~~L~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~ 554 (771)
T TIGR01069 501 QAKTFYGEFKEEINVLIEKLSALEKELEQKNEHLEKLLKEQEKLKKELEQEMEE 554 (771)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666667766777766 6666677777777777777777777788888877766
No 149
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=48.50 E-value=4.1e+02 Score=29.23 Aligned_cols=128 Identities=13% Similarity=0.203 Sum_probs=59.5
Q ss_pred HhhHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHHHHHH---
Q psy11615 86 KDMEGLQRAELDLANLQKELERARQEQENAASEKIKLERRLQEHQALQGDASDLKSSSAFSDLEVCQLKQEIELLRN--- 162 (224)
Q Consensus 86 kdle~Lq~AE~sl~dlQ~~Le~aqee~~~v~~EK~~LE~kl~~~~~ak~ea~rl~~~r~~sd~Els~l~eELe~vR~--- 162 (224)
.+++.|..-......+..+|...+..-.....+-..++.++++ .+..+.++.. ....+.++..+++.++.
T Consensus 207 ~~~~~~~~~~~~~~~ir~~l~~~q~kie~~~~~~~~le~ei~~---l~~~~~~l~~----~~~~~~~l~~ql~~l~~~~~ 279 (1311)
T TIGR00606 207 MELKYLKQYKEKACEIRDQITSKEAQLESSREIVKSYENELDP---LKNRLKEIEH----NLSKIMKLDNEIKALKSRKK 279 (1311)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Confidence 3344444433334445555555555555555555555555554 2222222221 11233334344444433
Q ss_pred HHHHHHhhhhhc-CCCCC---hhhHHHHhhHHHHHHHHHHHhHhhHHHHHHHHHHHHHhhccc
Q psy11615 163 ELQRAEGELEDR-CWAPP---PGLQHWLQLTHEIENKAYVKKKLMAEKQLQQAREARFDRGKC 221 (224)
Q Consensus 163 aL~~AE~eLe~~-~ws~P---~~LQ~wLQlT~EvE~q~y~~Kk~~AekQL~~AkE~~EKikK~ 221 (224)
.....-..|+.. .=.-| +.|+.|+. .|+-.+..|.......+.++..+....+.+++.
T Consensus 280 ~~~~~~~rL~~~i~~~l~~s~eEL~~ll~-~f~~~~~e~~~~~~~le~e~~~l~~el~~l~~~ 341 (1311)
T TIGR00606 280 QMEKDNSELELKMEKVFQGTDEQLNDLYH-NHQRTVREKERELVDCQRELEKLNKERRLLNQE 341 (1311)
T ss_pred HHHHHHHHHHHhhcccCCCCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333331 10112 33444443 344445667777777777777777776666543
No 150
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=48.21 E-value=2.5e+02 Score=26.77 Aligned_cols=60 Identities=27% Similarity=0.258 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhc-----CCC-------CChhhH--------HHHhhHHHHHHHHHHHhHhhHHHHHHH
Q psy11615 151 CQLKQEIELLRNELQRAEGELEDR-----CWA-------PPPGLQ--------HWLQLTHEIENKAYVKKKLMAEKQLQQ 210 (224)
Q Consensus 151 s~l~eELe~vR~aL~~AE~eLe~~-----~ws-------~P~~LQ--------~wLQlT~EvE~q~y~~Kk~~AekQL~~ 210 (224)
.+|++||-..+.+|.++.....+- .++ +|..=. .=|+--|..||. ..||..||....+
T Consensus 112 e~Leqelkr~KsELErsQ~~~~~~~~sl~~~stpqk~f~~p~tp~q~~~~sk~e~L~ekynkeve--erkrle~e~k~lq 189 (307)
T PF10481_consen 112 EKLEQELKRCKSELERSQQAASSGDVSLNPCSTPQKSFATPLTPSQYYSDSKYEELQEKYNKEVE--ERKRLEAEVKALQ 189 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCCccccccCCchhhccCCCChhhhhhhhhHHHHHHHHHHHHH--HHhhHHHHHHHHh
Confidence 335677777777777776655411 122 232222 224455555554 3688888877776
Q ss_pred HH
Q psy11615 211 AR 212 (224)
Q Consensus 211 Ak 212 (224)
|+
T Consensus 190 ~k 191 (307)
T PF10481_consen 190 AK 191 (307)
T ss_pred cc
Confidence 64
No 151
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=47.98 E-value=1.2e+02 Score=30.51 Aligned_cols=6 Identities=17% Similarity=0.042 Sum_probs=3.1
Q ss_pred hhHHHH
Q psy11615 181 GLQHWL 186 (224)
Q Consensus 181 ~LQ~wL 186 (224)
.|..||
T Consensus 348 ~l~~~l 353 (650)
T TIGR03185 348 EIAAEL 353 (650)
T ss_pred HHHHHH
Confidence 455555
No 152
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=47.93 E-value=1.1e+02 Score=28.27 Aligned_cols=81 Identities=14% Similarity=0.211 Sum_probs=43.2
Q ss_pred CchhHHHHHHHHHHHHHHHHHHhhhhh-hchHHHHH-HHHH--hhHhH-HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q psy11615 48 TSHVKDYILGTLILIALTICWYVYRQK-ESSQQHLR-RMMK--DMEGL-QRAELDLANLQKELERARQEQENAASEKIKL 122 (224)
Q Consensus 48 ~~~wKDi~Lv~slviavgGcWfAy~Qn-r~Sk~hl~-~Mmk--dle~L-q~AE~sl~dlQ~~Le~aqee~~~v~~EK~~L 122 (224)
..-.|..--+.|=++..|-.-|..-.+ -.-+.+-. .+.+ |+++. +....++..++.+++..+....++..+-.+|
T Consensus 116 ~~dlk~~R~Laseit~~GA~LydlL~kE~~lr~~R~~a~~r~~e~~~iE~~l~~ai~~~~~~~~~~~~~l~~l~~de~~L 195 (267)
T PF10234_consen 116 IQDLKAARQLASEITQRGASLYDLLGKEVELREERQRALARPLELNEIEKALKEAIKAVQQQLQQTQQQLNNLASDEANL 195 (267)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhchHhHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444555555555544443322 11222211 1222 33343 3334456777778888888788888887888
Q ss_pred HHHHHH
Q psy11615 123 ERRLQE 128 (224)
Q Consensus 123 E~kl~~ 128 (224)
+.|++.
T Consensus 196 e~KIek 201 (267)
T PF10234_consen 196 EAKIEK 201 (267)
T ss_pred HHHHHH
Confidence 777755
No 153
>PRK15396 murein lipoprotein; Provisional
Probab=47.89 E-value=1.1e+02 Score=23.55 Aligned_cols=24 Identities=17% Similarity=0.289 Sum_probs=14.7
Q ss_pred HHHHHHHHHhhhhhhchHHHHHHHHHhhHhHH
Q psy11615 61 LIALTICWYVYRQKESSQQHLRRMMKDMEGLQ 92 (224)
Q Consensus 61 viavgGcWfAy~Qnr~Sk~hl~~Mmkdle~Lq 92 (224)
+..++||-= ...+.++-.|++.|.
T Consensus 15 ~~LLaGCAs--------~~kvd~LssqV~~L~ 38 (78)
T PRK15396 15 STLLAGCSS--------NAKIDQLSSDVQTLN 38 (78)
T ss_pred HHHHHHcCC--------chhHHHHHHHHHHHH
Confidence 346799952 235666666666663
No 154
>PF13807 GNVR: G-rich domain on putative tyrosine kinase
Probab=47.54 E-value=66 Score=23.61 Aligned_cols=69 Identities=17% Similarity=0.150 Sum_probs=33.6
Q ss_pred hhchHHHHHHHHHHHHHHh--cccccccchhhhhcccccc--cCCCCCCchhHHHHHHHHHH-HHHHHHHHhhh
Q psy11615 4 YFMAEKQLQQAREACEKLR--KKRSSLVGAFVSTHGKSID--DVDRNSTSHVKDYILGTLIL-IALTICWYVYR 72 (224)
Q Consensus 4 ~~~a~~ql~~a~e~~eki~--kKr~s~~gsf~~aH~~s~D--~VDRer~~~wKDi~Lv~slv-iavgGcWfAy~ 72 (224)
|+.-..+...+++.-+.+- ....++..+....--+++| .+|..+.+.-+-+.+++.++ +.++|+-+++.
T Consensus 6 ~l~L~R~~~~~~~~Y~~Ll~r~~e~~~~~~~~~~~~~ivd~A~~P~~P~~P~~~lil~l~~~~Gl~lgi~~~~~ 79 (82)
T PF13807_consen 6 YLRLQRDVEIKRELYETLLQRYEEARLSKASNVSNVRIVDPAIVPDKPVSPKRALILALGLFLGLILGIGLAFL 79 (82)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCceeccccccCCCCCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556666666666662 2233333334444445666 34433444444455544444 44455555554
No 155
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=47.09 E-value=1.4e+02 Score=23.32 Aligned_cols=32 Identities=25% Similarity=0.400 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy11615 98 LANLQKELERARQEQENAASEKIKLERRLQEH 129 (224)
Q Consensus 98 l~dlQ~~Le~aqee~~~v~~EK~~LE~kl~~~ 129 (224)
+.++..+++..+++.+....+.+.||..+++.
T Consensus 5 ~q~~~~~~q~~q~~~~~l~~q~~~le~~~~E~ 36 (110)
T TIGR02338 5 VQNQLAQLQQLQQQLQAVATQKQQVEAQLKEA 36 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566677777777777777777777777763
No 156
>CHL00196 psbY photosystem II protein Y; Provisional
Probab=46.81 E-value=40 Score=22.79 Aligned_cols=31 Identities=13% Similarity=0.294 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHhhhhhhchHHHHHHHH
Q psy11615 55 ILGTLILIALTICWYVYRQKESSQQHLRRMM 85 (224)
Q Consensus 55 ~Lv~slviavgGcWfAy~Qnr~Sk~hl~~Mm 85 (224)
.+++++-|.+.+.|-.|.=-+-+-.++.+|-
T Consensus 5 lliVl~Pil~A~~Wa~fNIg~~Al~Q~q~~~ 35 (36)
T CHL00196 5 LLVIAAPVLAAASWALFNIGRLAIQQIQRLS 35 (36)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHhc
Confidence 4678888899999999998888888877763
No 157
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=46.71 E-value=1.7e+02 Score=24.48 Aligned_cols=37 Identities=14% Similarity=0.086 Sum_probs=26.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy11615 89 EGLQRAELDLANLQKELERARQEQENAASEKIKLERR 125 (224)
Q Consensus 89 e~Lq~AE~sl~dlQ~~Le~aqee~~~v~~EK~~LE~k 125 (224)
++|..|+....+.++.+++++........|.+.+=..
T Consensus 65 ~~l~~Ae~~~~eA~~~l~e~e~~L~~A~~ea~~Ii~~ 101 (184)
T PRK13455 65 SELEEARALREEAQTLLASYERKQREVQEQADRIVAA 101 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788888888888888888777777766555433
No 158
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=46.57 E-value=1.6e+02 Score=29.33 Aligned_cols=72 Identities=21% Similarity=0.260 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHh-----hhhcccccccccccchhHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy11615 101 LQKELERARQEQENAASEKIKLERRLQEHQ-----ALQGDASDLKSSSAFSDLEVCQLKQEIELLRNELQRAEGELE 172 (224)
Q Consensus 101 lQ~~Le~aqee~~~v~~EK~~LE~kl~~~~-----~ak~ea~rl~~~r~~sd~Els~l~eELe~vR~aL~~AE~eLe 172 (224)
+..-|...++..+.|..|-+.-|.+++.+- .|-+|-..||.-+.+-.-|+...+.|++|+++++.---..|+
T Consensus 311 ~e~~l~a~qeakek~~KEAqareaklqaec~rQ~qlaLEEKaaLrkerd~L~keLeekkreleql~~q~~v~~saLd 387 (442)
T PF06637_consen 311 AEQGLQASQEAKEKAGKEAQAREAKLQAECARQTQLALEEKAALRKERDSLAKELEEKKRELEQLKMQLAVKTSALD 387 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 334455558888899999999999999762 366666777764444444666667899999998876555543
No 159
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=46.42 E-value=1.3e+02 Score=31.31 Aligned_cols=70 Identities=17% Similarity=0.158 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHhhhhh----------hchHHHHHHHHHhhHhH-HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy11615 59 LILIALTICWYVYRQK----------ESSQQHLRRMMKDMEGL-QRAELDLANLQKELERARQEQENAASEKIKLERRLQ 127 (224)
Q Consensus 59 slviavgGcWfAy~Qn----------r~Sk~hl~~Mmkdle~L-q~AE~sl~dlQ~~Le~aqee~~~v~~EK~~LE~kl~ 127 (224)
-|+.|+.|--||+.== ..++..+..--.+++.| .+-+..-.+++++.+++....+.+...+..||++..
T Consensus 479 kl~~G~~g~S~a~~iA~~~Glp~~ii~~A~~~~~~~~~~~~~li~~l~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~ 558 (782)
T PRK00409 479 RLLIGIPGKSNAFEIAKRLGLPENIIEEAKKLIGEDKEKLNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKE 558 (782)
T ss_pred EEeeCCCCCcHHHHHHHHhCcCHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777777665422 24555665555566655 555555566666666666666666666666666665
Q ss_pred H
Q psy11615 128 E 128 (224)
Q Consensus 128 ~ 128 (224)
+
T Consensus 559 ~ 559 (782)
T PRK00409 559 K 559 (782)
T ss_pred H
Confidence 5
No 160
>PF02936 COX4: Cytochrome c oxidase subunit IV; InterPro: IPR004203 Cytochrome c oxidase, a 13 sub-unit complex (1.9.3.1 from EC) is the terminal oxidase in the mitochondrial electron transport chain. This family is composed of cytochrome c oxidase subunit IV. The Dictyostelium discoideum (Slime mould) member of this family is called COX VI. The Saccharomyces cerevisiae protein YGX6_YEAST appears to be the yeast COX IV subunit.; GO: 0004129 cytochrome-c oxidase activity; PDB: 3ABK_Q 3AG1_Q 3ASN_Q 1OCZ_D 2EIN_Q 2OCC_D 2YBB_O 3AG3_D 1OCO_Q 1V55_Q ....
Probab=46.05 E-value=19 Score=30.04 Aligned_cols=42 Identities=14% Similarity=0.343 Sum_probs=30.2
Q ss_pred chhhhhcccccccCCCCCCchhHHHHHHHHHHHHHHHHHHhhh
Q psy11615 30 GAFVSTHGKSIDDVDRNSTSHVKDYILGTLILIALTICWYVYR 72 (224)
Q Consensus 30 gsf~~aH~~s~D~VDRer~~~wKDi~Lv~slviavgGcWfAy~ 72 (224)
..|+++-|.+.-+ +......||-|...+.++|+++++.|+..
T Consensus 54 alY~isFg~~g~r-~~~~~gewk~v~~~~~~~i~~s~~l~~~~ 95 (142)
T PF02936_consen 54 ALYRISFGQTGPR-MKAPTGEWKKVFGGVFIFIGFSVLLFIWQ 95 (142)
T ss_dssp HHHHHH-SS-HHH-HT---SHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhcCcccc-cccCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777777666 45566899999999999999999888765
No 161
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=45.86 E-value=2.6e+02 Score=26.13 Aligned_cols=24 Identities=25% Similarity=0.419 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhh
Q psy11615 149 EVCQLKQEIELLRNELQRAEGELE 172 (224)
Q Consensus 149 Els~l~eELe~vR~aL~~AE~eLe 172 (224)
++.+|+.+|+.++.-+..=..-|.
T Consensus 81 eik~l~~eI~~~~~~I~~r~~~l~ 104 (265)
T COG3883 81 EIKKLQKEIAELKENIVERQELLK 104 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555444443333333
No 162
>PF13949 ALIX_LYPXL_bnd: ALIX V-shaped domain binding to HIV ; PDB: 2XS1_A 2XS8_A 2R03_A 2R02_A 2OEX_B 2OEV_A 2OJQ_A 2R05_A.
Probab=45.77 E-value=2.1e+02 Score=25.09 Aligned_cols=75 Identities=17% Similarity=0.274 Sum_probs=46.3
Q ss_pred chHHHHHHHHHhhHhH-HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhcccccccccccchhHHHHHHH
Q psy11615 76 SSQQHLRRMMKDMEGL-QRAELDLANLQKELERARQEQENAASEKIKLERRLQEHQALQGDASDLKSSSAFSDLEVCQLK 154 (224)
Q Consensus 76 ~Sk~hl~~Mmkdle~L-q~AE~sl~dlQ~~Le~aqee~~~v~~EK~~LE~kl~~~~~ak~ea~rl~~~r~~sd~Els~l~ 154 (224)
..-..|..+|.+|..+ +.++..|.+....|.....+. ..++. +-.+ +=.|+.++.-.+.+.
T Consensus 22 ~g~~~l~~~l~~l~~~~~~~~~~L~e~~~~L~~E~~ed-----------~~~r~----~~g~---~W~r~~S~~~~~~l~ 83 (296)
T PF13949_consen 22 GGIEKLEESLQELPELSQEVRSILDEIEEMLDEEERED-----------EQLRA----KYGE---RWTRPPSSELNASLR 83 (296)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHH----HSTT---TCGSS-HHHHCHHHH
T ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHH----HhcC---CCcCCCcHhhHHHHH
Confidence 3367899999999999 888889999998888755432 22332 1111 012233332233456
Q ss_pred HHHHHHHHHHHHHH
Q psy11615 155 QEIELLRNELQRAE 168 (224)
Q Consensus 155 eELe~vR~aL~~AE 168 (224)
.+|...|..|..|.
T Consensus 84 ~~l~~~~~~L~~A~ 97 (296)
T PF13949_consen 84 KELQKYREYLEQAS 97 (296)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 77777777777774
No 163
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=45.68 E-value=43 Score=23.61 Aligned_cols=15 Identities=47% Similarity=0.687 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHhHHH
Q psy11615 101 LQKELERARQEQENA 115 (224)
Q Consensus 101 lQ~~Le~aqee~~~v 115 (224)
+++++++.+.++...
T Consensus 29 l~~~i~~l~~e~~~L 43 (80)
T PF04977_consen 29 LQKEIEELKKENEEL 43 (80)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444444443333
No 164
>PF12430 ABA_GPCR: Abscisic acid G-protein coupled receptor
Probab=45.62 E-value=18 Score=31.24 Aligned_cols=34 Identities=9% Similarity=-0.000 Sum_probs=30.1
Q ss_pred ccCCCCCCchhHHHHHHHHHHHHHHHHHHhhhhh
Q psy11615 41 DDVDRNSTSHVKDYILGTLILIALTICWYVYRQK 74 (224)
Q Consensus 41 D~VDRer~~~wKDi~Lv~slviavgGcWfAy~Qn 74 (224)
+.+|-.-.++|=|.+.++|.++-++|.|++..++
T Consensus 163 ~~~~~~~~~~wFD~iFl~S~~~T~~~i~~~~~~~ 196 (196)
T PF12430_consen 163 SLLEFNFYDRWFDKIFLISAILTAVGIYVAHKHR 196 (196)
T ss_pred cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4677788999999999999999999999998753
No 165
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=45.59 E-value=21 Score=28.53 Aligned_cols=19 Identities=21% Similarity=0.389 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q psy11615 54 YILGTLILIALTICWYVYR 72 (224)
Q Consensus 54 i~Lv~slviavgGcWfAy~ 72 (224)
+.++++++..++|||.+|+
T Consensus 76 ~tl~~lllGv~~G~~n~w~ 94 (100)
T TIGR02230 76 WTLTMLIVGVVIGCLNAWH 94 (100)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4666777777889998874
No 166
>PRK13240 pbsY photosystem II protein Y; Reviewed
Probab=45.28 E-value=53 Score=22.59 Aligned_cols=33 Identities=18% Similarity=0.418 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHhhhhhhchHHHHHHHHHh
Q psy11615 55 ILGTLILIALTICWYVYRQKESSQQHLRRMMKD 87 (224)
Q Consensus 55 ~Lv~slviavgGcWfAy~Qnr~Sk~hl~~Mmkd 87 (224)
.+++++-|.+.+.|-.|.=-+-+-.++.+|.+.
T Consensus 5 lliVl~Pil~A~~Wa~fNIg~~Al~Q~q~~~~~ 37 (40)
T PRK13240 5 LLIVLAPILAAAGWAVFNIGKAAREQFQRFLNR 37 (40)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhh
Confidence 467788889999999999888888888888653
No 167
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=45.17 E-value=3.2e+02 Score=28.57 Aligned_cols=51 Identities=22% Similarity=0.337 Sum_probs=26.4
Q ss_pred HHHHHHHHHhhH----hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy11615 78 QQHLRRMMKDME----GLQRAELDLANLQKELERARQEQENAASEKIKLERRLQE 128 (224)
Q Consensus 78 k~hl~~Mmkdle----~Lq~AE~sl~dlQ~~Le~aqee~~~v~~EK~~LE~kl~~ 128 (224)
+.|+..++..++ .|..++....+++..-++..+..+.+..--..|.+++..
T Consensus 564 ~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~ 618 (717)
T PF10168_consen 564 QRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDR 618 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444443333 455555555555555555555444554444556666665
No 168
>PF14283 DUF4366: Domain of unknown function (DUF4366)
Probab=45.06 E-value=6.1 Score=35.23 Aligned_cols=8 Identities=25% Similarity=0.256 Sum_probs=2.9
Q ss_pred HHHHHHhh
Q psy11615 64 LTICWYVY 71 (224)
Q Consensus 64 vgGcWfAy 71 (224)
+||.-|+|
T Consensus 172 ~gGGa~yY 179 (218)
T PF14283_consen 172 IGGGAYYY 179 (218)
T ss_pred hhcceEEE
Confidence 33333333
No 169
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=45.02 E-value=2e+02 Score=24.56 Aligned_cols=50 Identities=22% Similarity=0.444 Sum_probs=37.4
Q ss_pred HHHHHHHHhhHhH-HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy11615 79 QHLRRMMKDMEGL-QRAELDLANLQKELERARQEQENAASEKIKLERRLQE 128 (224)
Q Consensus 79 ~hl~~Mmkdle~L-q~AE~sl~dlQ~~Le~aqee~~~v~~EK~~LE~kl~~ 128 (224)
.+++.+...+|.= .-.++.+.|++..|.+++..-..+...+..|++++.+
T Consensus 12 a~~~~~ld~~EDP~~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~ 62 (221)
T PF04012_consen 12 ANINELLDKAEDPEKMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDE 62 (221)
T ss_pred HHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444454444332 4567888888899999999999999999999988887
No 170
>KOG4606|consensus
Probab=44.94 E-value=23 Score=29.56 Aligned_cols=32 Identities=16% Similarity=0.125 Sum_probs=27.1
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHhhhhhhc
Q psy11615 45 RNSTSHVKDYILGTLILIALTICWYVYRQKES 76 (224)
Q Consensus 45 Rer~~~wKDi~Lv~slviavgGcWfAy~Qnr~ 76 (224)
+|...+|.=...++|++.|.+|.||..+--..
T Consensus 25 ~Pst~RWRi~lvi~svc~gaigawywl~dpet 56 (126)
T KOG4606|consen 25 GPSTGRWRIALVIFSVCTGAIGAWYWLIDPET 56 (126)
T ss_pred CCCccchhhHHHHHHHHHHhhhhhhhhcCcce
Confidence 57778999999999999999999998765443
No 171
>KOG2391|consensus
Probab=44.72 E-value=1e+02 Score=30.00 Aligned_cols=46 Identities=26% Similarity=0.382 Sum_probs=35.4
Q ss_pred hhhchHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy11615 73 QKESSQQHLRRMMKDMEGLQRAELDLANLQKELERARQEQENAASEKIKLERRLQE 128 (224)
Q Consensus 73 Qnr~Sk~hl~~Mmkdle~Lq~AE~sl~dlQ~~Le~aqee~~~v~~EK~~LE~kl~~ 128 (224)
=++.++.-|.+...-+++|.|-+++|..-+++|+. +++-||+++.+
T Consensus 219 lR~r~eeeme~~~aeq~slkRt~EeL~~G~~kL~~----------~~etLEqq~~~ 264 (365)
T KOG2391|consen 219 LRRRREEEMERLQAEQESLKRTEEELNIGKQKLVA----------MKETLEQQLQS 264 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHH----------HHHHHHHHHHH
Confidence 46778888999999999999988888888888776 44456666554
No 172
>KOG1853|consensus
Probab=44.65 E-value=2.3e+02 Score=27.04 Aligned_cols=56 Identities=29% Similarity=0.386 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy11615 96 LDLANLQKELERARQEQENAASEKIKLERRLQEHQALQGDASDLKSSSAFSDLEVCQLKQEIELLRNELQRAEGELE 172 (224)
Q Consensus 96 ~sl~dlQ~~Le~aqee~~~v~~EK~~LE~kl~~~~~ak~ea~rl~~~r~~sd~Els~l~eELe~vR~aL~~AE~eLe 172 (224)
-+|.||-.+|..|=+.+-. ||-+|.+ .....+ +++||++|-..+|.+|.--++.-|
T Consensus 133 ~sleDfeqrLnqAIErnAf-------LESELdE-------------ke~lle-svqRLkdEardlrqelavr~kq~E 188 (333)
T KOG1853|consen 133 YSLEDFEQRLNQAIERNAF-------LESELDE-------------KEVLLE-SVQRLKDEARDLRQELAVRTKQTE 188 (333)
T ss_pred hhHHHHHHHHHHHHHHHHH-------HHHHhhH-------------HHHHHH-HHHHHHHHHHHHHHHHHHHHhhcc
Confidence 4588888888887764432 2333333 111112 677777777777777765554433
No 173
>COG4741 Predicted secreted endonuclease distantly related to archaeal Holliday junction resolvase [Nucleotide transport and metabolism]
Probab=44.60 E-value=2.2e+02 Score=25.10 Aligned_cols=28 Identities=18% Similarity=0.278 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy11615 101 LQKELERARQEQENAASEKIKLERRLQE 128 (224)
Q Consensus 101 lQ~~Le~aqee~~~v~~EK~~LE~kl~~ 128 (224)
++..+.+|+.-.......|..+|++.++
T Consensus 47 ~~r~v~ea~~~ke~~~Kl~E~iekkiee 74 (175)
T COG4741 47 RERLVNEAQARKEEEWKLKEWIEKKIEE 74 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444455555555544
No 174
>KOG0977|consensus
Probab=44.55 E-value=85 Score=31.98 Aligned_cols=76 Identities=34% Similarity=0.426 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy11615 95 ELDLANLQKELERARQEQENAASEKIKLERRLQEHQALQGDASDLKSSSAFSDLEVCQLKQEIELLRNELQRAEGELED 173 (224)
Q Consensus 95 E~sl~dlQ~~Le~aqee~~~v~~EK~~LE~kl~~~~~ak~ea~rl~~~r~~sd~Els~l~eELe~vR~aL~~AE~eLe~ 173 (224)
+-.+.++-.++++++.+...+-...-..+..+-+ .+.+-.-+......-+.|+.+|+.|...++..|.+|-.+|++
T Consensus 119 ~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~---leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~ 194 (546)
T KOG0977|consen 119 REELKELRKKLEKAEKERRGAREKLDDYLSRLSE---LEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLDD 194 (546)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhh---hhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 3345555556666655544444433333333322 111111111111222446777778888888888777765543
No 175
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=44.24 E-value=1.3e+02 Score=22.16 Aligned_cols=14 Identities=50% Similarity=0.724 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHH
Q psy11615 149 EVCQLKQEIELLRN 162 (224)
Q Consensus 149 Els~l~eELe~vR~ 162 (224)
++.+|+.+++.+|+
T Consensus 47 ei~~L~~e~ee~r~ 60 (61)
T PF08826_consen 47 EIERLKKEMEELRS 60 (61)
T ss_dssp HHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHhhc
Confidence 56666666666654
No 176
>KOG0999|consensus
Probab=44.17 E-value=1.5e+02 Score=31.06 Aligned_cols=57 Identities=28% Similarity=0.419 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH---HHHHHHh-hhhcccccccccccchhHH
Q psy11615 91 LQRAELDLANLQKELERARQEQENAASEKIKLE---RRLQEHQ-ALQGDASDLKSSSAFSDLE 149 (224)
Q Consensus 91 Lq~AE~sl~dlQ~~Le~aqee~~~v~~EK~~LE---~kl~~~~-~ak~ea~rl~~~r~~sd~E 149 (224)
|+.-++.|.+.|.+.+....++..-..-+.++| .+|++++ +-|+-..||=+ +++++|
T Consensus 116 LKq~r~el~~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe~KfRE~Rlls--eYSELE 176 (772)
T KOG0999|consen 116 LKQLRQELTNVQEENERLEKVHSDLKESNAAVEDQRRRLRDELKEYKFREARLLS--EYSELE 176 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHHHHH--HHHHHH
Confidence 455567888888888888888777766677777 4566665 55555554432 455544
No 177
>KOG4657|consensus
Probab=44.07 E-value=2.7e+02 Score=25.88 Aligned_cols=112 Identities=19% Similarity=0.133 Sum_probs=59.3
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhhchHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Q psy11615 51 VKDYILGTLILIALTICWYVYRQKESSQQHLRRMMKDMEGLQRAELDLANLQKELERARQEQENAASEKIKLERRLQEHQ 130 (224)
Q Consensus 51 wKDi~Lv~slviavgGcWfAy~Qnr~Sk~hl~~Mmkdle~Lq~AE~sl~dlQ~~Le~aqee~~~v~~EK~~LE~kl~~~~ 130 (224)
-+||.-..|++=++.|--|- .=-++-..-+.++..+...+.+++++|.+-+.++.+--+ +..||-.+.-.+.+++
T Consensus 21 ~~~i~n~~s~~D~f~q~~r~-~~~nS~~efar~lS~~~~e~e~l~~~l~etene~~~~ne----L~~ek~~~q~~ieqei 95 (246)
T KOG4657|consen 21 EKDIHNQRSKIDSFIQSPRR-RSMNSLVEFARALSQSQVELENLKADLRETENELVKVNE----LKTEKEARQMGIEQEI 95 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 34555555555555554411 111222234556667777777777777776666655332 5555555555566655
Q ss_pred -hhhcccccccccccchhHHHHHHHHHHHHHHHHHHHH
Q psy11615 131 -ALQGDASDLKSSSAFSDLEVCQLKQEIELLRNELQRA 167 (224)
Q Consensus 131 -~ak~ea~rl~~~r~~sd~Els~l~eELe~vR~aL~~A 167 (224)
+.+.+-++++---..-..|..++++=|-+-|.+|.+|
T Consensus 96 k~~q~elEvl~~n~Q~lkeE~dd~keiIs~kr~~~~Ka 133 (246)
T KOG4657|consen 96 KATQSELEVLRRNLQLLKEEKDDSKEIISQKRQALSKA 133 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 4444444443211222335555666667777766666
No 178
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=43.69 E-value=1e+02 Score=25.50 Aligned_cols=29 Identities=28% Similarity=0.361 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy11615 100 NLQKELERARQEQENAASEKIKLERRLQE 128 (224)
Q Consensus 100 dlQ~~Le~aqee~~~v~~EK~~LE~kl~~ 128 (224)
+|..++...+++......+-..|+.++..
T Consensus 76 ~ld~ei~~L~~el~~l~~~~k~l~~eL~~ 104 (169)
T PF07106_consen 76 ELDAEIKELREELAELKKEVKSLEAELAS 104 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333344444444444443
No 179
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=43.45 E-value=1.9e+02 Score=23.96 Aligned_cols=24 Identities=21% Similarity=0.363 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhh
Q psy11615 149 EVCQLKQEIELLRNELQRAEGELE 172 (224)
Q Consensus 149 Els~l~eELe~vR~aL~~AE~eLe 172 (224)
-++.|++||+..-..|..+...|.
T Consensus 81 riq~LEeele~ae~~L~e~~ekl~ 104 (143)
T PF12718_consen 81 RIQLLEEELEEAEKKLKETTEKLR 104 (143)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445568888888888877765554
No 180
>PRK02224 chromosome segregation protein; Provisional
Probab=43.29 E-value=1.5e+02 Score=30.26 Aligned_cols=17 Identities=35% Similarity=0.466 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHhHH
Q psy11615 98 LANLQKELERARQEQEN 114 (224)
Q Consensus 98 l~dlQ~~Le~aqee~~~ 114 (224)
|..++.++...+.+...
T Consensus 208 l~~~~~~l~el~~~i~~ 224 (880)
T PRK02224 208 LNGLESELAELDEEIER 224 (880)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 181
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=43.28 E-value=2.1e+02 Score=24.34 Aligned_cols=49 Identities=8% Similarity=0.171 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh--hhhccccccc
Q psy11615 92 QRAELDLANLQKELERARQEQENAASEKIKLERRLQEHQ--ALQGDASDLK 140 (224)
Q Consensus 92 q~AE~sl~dlQ~~Le~aqee~~~v~~EK~~LE~kl~~~~--~ak~ea~rl~ 140 (224)
+.|+.-+.+.+..|.+|+.+-+....+-..--+++.+++ .++.++.++.
T Consensus 52 ~eA~~l~~e~e~~L~~Ar~EA~~Ii~~A~~~a~~~~~ea~~eA~~ea~r~~ 102 (154)
T PRK06568 52 EDAALLFEQTNAQIKKLETLRSQMIEESNEVTKKIIQEKTKEIEEFLEHKK 102 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555667777777777766665554443334444432 3555555444
No 182
>KOG0933|consensus
Probab=42.88 E-value=4.9e+02 Score=29.10 Aligned_cols=53 Identities=19% Similarity=0.088 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhhcCCCCChhhHHHHhhHHHHHHHHHHHhHhhHHHHHHHHHHHHHhhccc
Q psy11615 153 LKQEIELLRNELQRAEGELEDRCWAPPPGLQHWLQLTHEIENKAYVKKKLMAEKQLQQAREARFDRGKC 221 (224)
Q Consensus 153 l~eELe~vR~aL~~AE~eLe~~~ws~P~~LQ~wLQlT~EvE~q~y~~Kk~~AekQL~~AkE~~EKikK~ 221 (224)
+..++.+.+..+.....+|.-+ +.|..-.......-...+.+-.+.||+|+|.
T Consensus 411 ~~t~~k~a~~k~e~~~~elk~~----------------e~e~~t~~~~~~~~~~~ld~~q~eve~l~~~ 463 (1174)
T KOG0933|consen 411 ASTEIKQAKLKLEHLRKELKLR----------------EGELATASAEYVKDIEELDALQNEVEKLKKR 463 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh----------------hhHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555433 2333333333334445555556666666653
No 183
>PRK11556 multidrug efflux system subunit MdtA; Provisional
Probab=42.76 E-value=23 Score=33.46 Aligned_cols=24 Identities=8% Similarity=0.393 Sum_probs=15.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhh
Q psy11615 50 HVKDYILGTLILIALTICWYVYRQ 73 (224)
Q Consensus 50 ~wKDi~Lv~slviavgGcWfAy~Q 73 (224)
+++-+.+++.+++.++|+||+|+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~ 28 (415)
T PRK11556 5 RKSRWVIVIVVVIAAIAAFWFWQG 28 (415)
T ss_pred cchhHHHHHHHHHHHHHHHHhhhh
Confidence 455556666666667777776644
No 184
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=42.17 E-value=2.1e+02 Score=24.08 Aligned_cols=16 Identities=31% Similarity=0.380 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHh
Q psy11615 154 KQEIELLRNELQRAEG 169 (224)
Q Consensus 154 ~eELe~vR~aL~~AE~ 169 (224)
..|+..+|.++..+.-
T Consensus 137 ~~ei~~lr~~iE~~K~ 152 (177)
T PF07798_consen 137 DTEIANLRTEIESLKW 152 (177)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4667777777665443
No 185
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=41.99 E-value=2.9e+02 Score=26.35 Aligned_cols=40 Identities=30% Similarity=0.617 Sum_probs=25.7
Q ss_pred HHHHHhhHhHHHHHHHH------------HHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy11615 82 RRMMKDMEGLQRAELDL------------ANLQKELERARQEQENAASEKIKLERRLQE 128 (224)
Q Consensus 82 ~~Mmkdle~Lq~AE~sl------------~dlQ~~Le~aqee~~~v~~EK~~LE~kl~~ 128 (224)
+.+||.+++|++=...| .+|+++|.+.+. ||..||..|..
T Consensus 80 N~LlKkl~~l~keKe~L~~~~e~EEE~ltn~L~rkl~qLr~-------EK~~lE~~Le~ 131 (310)
T PF09755_consen 80 NTLLKKLQQLKKEKETLALKYEQEEEFLTNDLSRKLNQLRQ-------EKVELENQLEQ 131 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
Confidence 46788888876655544 356666666554 66677766665
No 186
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=41.64 E-value=1.4e+02 Score=21.93 Aligned_cols=14 Identities=50% Similarity=0.783 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHH
Q psy11615 153 LKQEIELLRNELQR 166 (224)
Q Consensus 153 l~eELe~vR~aL~~ 166 (224)
|.+||..++..+..
T Consensus 44 L~~ei~~L~~e~ee 57 (61)
T PF08826_consen 44 LEQEIERLKKEMEE 57 (61)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 56677777766654
No 187
>PF10368 YkyA: Putative cell-wall binding lipoprotein; InterPro: IPR019454 The YkyA family of proteins contain a lipoprotein signal and a hydrolase domain. They are similar to cell wall binding proteins and might also be recognisable by a host immune defence system. It is thus likely that they function in pathways important for pathogenicity []. ; PDB: 2AP3_A.
Probab=41.50 E-value=1.7e+02 Score=25.57 Aligned_cols=45 Identities=16% Similarity=0.210 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHhhhhhhchHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHH
Q psy11615 58 TLILIALTICWYVYRQKESSQQHLRRMMKDMEGLQRAELDLANLQKELERARQ 110 (224)
Q Consensus 58 ~slviavgGcWfAy~Qnr~Sk~hl~~Mmkdle~Lq~AE~sl~dlQ~~Le~aqe 110 (224)
+..++.++|| +. ...+..+-..|+.-...|..+.+-|+.|+...+
T Consensus 2 ~~~~~lLagC-~~-------~~~~e~~~~~le~a~~~Ek~~~~~~k~L~~lE~ 46 (204)
T PF10368_consen 2 IASALLLAGC-TG-------KKPEEQLYDQLEKAVKQEKPFKEQQKKLNELEK 46 (204)
T ss_dssp -----------HH-------HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhc-CC-------CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556778999 53 445566666777777777888888888877544
No 188
>PF12729 4HB_MCP_1: Four helix bundle sensory module for signal transduction; InterPro: IPR024478 This entry represents a four-helix bundle that operates as a ubiquitous sensory module in prokaryotic signal-transduction, which is known as four-helix bundles methyl-accepting chemotaxis protein (4HB_MCP) domain. The 4HB_MCP is always found between two predicted transmembrane helices indicating that it detects only extracellular signals. In many cases the domain is associated with a cytoplasmic HAMP domain suggesting that most proteins carrying the bundle might share the mechanism of transmembrane signalling which is well-characterised in E coli chemoreceptors [].
Probab=41.05 E-value=1.6e+02 Score=22.31 Aligned_cols=49 Identities=18% Similarity=0.306 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHhhhhhhchHHHHHHHHHh----hHhHHHHHHHHHHHHHHH
Q psy11615 57 GTLILIALTICWYVYRQKESSQQHLRRMMKD----MEGLQRAELDLANLQKEL 105 (224)
Q Consensus 57 v~slviavgGcWfAy~Qnr~Sk~hl~~Mmkd----le~Lq~AE~sl~dlQ~~L 105 (224)
++++++.++..+|++.+=+.....+..+..+ +..+..+...+.+++..+
T Consensus 13 ~~~~~l~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (181)
T PF12729_consen 13 GLIILLLLIVGIVGLYSLSQINQNVEEIYENNLPSIELLNDIRSNLQRIRRAL 65 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444567777777777777766554 444455555555555444
No 189
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=40.91 E-value=1.9e+02 Score=27.10 Aligned_cols=21 Identities=29% Similarity=0.469 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHhHHHHHH
Q psy11615 98 LANLQKELERARQEQENAASE 118 (224)
Q Consensus 98 l~dlQ~~Le~aqee~~~v~~E 118 (224)
+.++..+|+..++|+.....|
T Consensus 137 ~ee~kekl~E~~~EkeeL~~e 157 (290)
T COG4026 137 YEELKEKLEELQKEKEELLKE 157 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444443333
No 190
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=40.74 E-value=2.6e+02 Score=26.74 Aligned_cols=37 Identities=24% Similarity=0.390 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy11615 92 QRAELDLANLQKELERARQEQENAASEKIKLERRLQE 128 (224)
Q Consensus 92 q~AE~sl~dlQ~~Le~aqee~~~v~~EK~~LE~kl~~ 128 (224)
.+-|...+-...+|.-|-.++.-..+-|.+||--++.
T Consensus 87 erLEtEiES~rsRLaaAi~d~dqsq~skrdlelafqr 123 (305)
T PF14915_consen 87 ERLETEIESYRSRLAAAIQDHDQSQTSKRDLELAFQR 123 (305)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHH
Confidence 4455556666668988888888888888888865554
No 191
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=40.69 E-value=3.8e+02 Score=26.71 Aligned_cols=43 Identities=21% Similarity=0.339 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhcCCCCChhhHHHHhhHHHHHHHH
Q psy11615 154 KQEIELLRNELQRAEGELEDRCWAPPPGLQHWLQLTHEIENKA 196 (224)
Q Consensus 154 ~eELe~vR~aL~~AE~eLe~~~ws~P~~LQ~wLQlT~EvE~q~ 196 (224)
+.++..++.-.+...+.|.+++-+=-+++-.+-..=-++|-.+
T Consensus 135 r~~i~~l~~~y~~lrk~ll~~~~~~G~a~~~Le~~L~~ie~~F 177 (560)
T PF06160_consen 135 REEIEELKEKYRELRKELLAHSFSYGPAIEELEKQLENIEEEF 177 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhchhHHHHHHHHHHHHHHH
Confidence 3677777777777777776664333333444333333444333
No 192
>PF03203 MerC: MerC mercury resistance protein
Probab=40.42 E-value=37 Score=26.72 Aligned_cols=31 Identities=19% Similarity=0.159 Sum_probs=26.1
Q ss_pred CchhHHHHHHHHHHHHHHHHHHhhhhhhchH
Q psy11615 48 TSHVKDYILGTLILIALTICWYVYRQKESSQ 78 (224)
Q Consensus 48 ~~~wKDi~Lv~slviavgGcWfAy~Qnr~Sk 78 (224)
..+|..+.+.+.+++++.+.|+.|+++|+..
T Consensus 36 ~~~~h~~ll~~~~~i~~~al~~g~r~h~~~~ 66 (116)
T PF03203_consen 36 NEWFHWLLLYLFLPIALLALFRGYRRHRRWL 66 (116)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhhccchH
Confidence 4567778899999999999999999998543
No 193
>PLN02678 seryl-tRNA synthetase
Probab=40.37 E-value=1.5e+02 Score=29.17 Aligned_cols=74 Identities=27% Similarity=0.296 Sum_probs=46.0
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHHHHHHHHHH
Q psy11615 87 DMEGLQRAELDLANLQKELERARQEQENAASEKIKLERRLQEHQALQGDASDLKSSSAFSDLEVCQLKQEIELLRNELQR 166 (224)
Q Consensus 87 dle~Lq~AE~sl~dlQ~~Le~aqee~~~v~~EK~~LE~kl~~~~~ak~ea~rl~~~r~~sd~Els~l~eELe~vR~aL~~ 166 (224)
.++.+-........++.+++..+.++-.+..+=..+ ++ ...++..|. -+++.|++|+..+...+..
T Consensus 31 ~id~il~ld~~~r~l~~~~e~lr~erN~~sk~I~~~---k~----~~~~~~~l~-------~~~~~Lk~ei~~le~~~~~ 96 (448)
T PLN02678 31 LVDEVIALDKEWRQRQFELDSLRKEFNKLNKEVAKL---KI----AKEDATELI-------AETKELKKEITEKEAEVQE 96 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hh----CCCcHHHHH-------HHHHHHHHHHHHHHHHHHH
Confidence 367777888888888888888888777666643221 11 111111111 1556677888888888888
Q ss_pred HHhhhhhc
Q psy11615 167 AEGELEDR 174 (224)
Q Consensus 167 AE~eLe~~ 174 (224)
.+.++..-
T Consensus 97 ~~~~l~~~ 104 (448)
T PLN02678 97 AKAALDAK 104 (448)
T ss_pred HHHHHHHH
Confidence 77766543
No 194
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=40.27 E-value=1.8e+02 Score=29.71 Aligned_cols=38 Identities=32% Similarity=0.247 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy11615 91 LQRAELDLANLQKELERARQEQENAASEKIKLERRLQE 128 (224)
Q Consensus 91 Lq~AE~sl~dlQ~~Le~aqee~~~v~~EK~~LE~kl~~ 128 (224)
|..++.++..||.-++...+.-.+...++......|-+
T Consensus 389 L~d~e~ni~kL~~~v~~s~~rl~~L~~qWe~~R~pL~~ 426 (594)
T PF05667_consen 389 LPDAEENIAKLQALVEASEQRLVELAQQWEKHRAPLIE 426 (594)
T ss_pred hcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 44556666666666666666666666666555555544
No 195
>PF13172 PepSY_TM_1: PepSY-associated TM helix
Probab=40.23 E-value=32 Score=21.76 Aligned_cols=18 Identities=28% Similarity=0.211 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHhh
Q psy11615 54 YILGTLILIALTICWYVY 71 (224)
Q Consensus 54 i~Lv~slviavgGcWfAy 71 (224)
+..++++++++.|+++.|
T Consensus 15 ~~~~~ll~~~lTG~~l~~ 32 (34)
T PF13172_consen 15 IAAIFLLLLALTGALLNF 32 (34)
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 345667788899998876
No 196
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=39.82 E-value=56 Score=24.84 Aligned_cols=21 Identities=24% Similarity=0.241 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHhhhhhhc
Q psy11615 56 LGTLILIALTICWYVYRQKES 76 (224)
Q Consensus 56 Lv~slviavgGcWfAy~Qnr~ 76 (224)
.++.|++|....|+-|+-++.
T Consensus 11 iif~ifVap~wl~lHY~~k~~ 31 (75)
T TIGR02976 11 IIFVIFVAPLWLILHYRSKRK 31 (75)
T ss_pred HHHHHHHHHHHHHHHHHhhhc
Confidence 344556677778888885443
No 197
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=39.69 E-value=2.7e+02 Score=24.69 Aligned_cols=83 Identities=27% Similarity=0.397 Sum_probs=55.8
Q ss_pred HHHhhHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHHHHHHH
Q psy11615 84 MMKDMEGLQRAELDLANLQKELERARQEQENAASEKIKLERRLQEHQALQGDASDLKSSSAFSDLEVCQLKQEIELLRNE 163 (224)
Q Consensus 84 Mmkdle~Lq~AE~sl~dlQ~~Le~aqee~~~v~~EK~~LE~kl~~~~~ak~ea~rl~~~r~~sd~Els~l~eELe~vR~a 163 (224)
..++-+.+.++...+.++...+...+.+-.+....+..||..+.+-.. ++..-...-+..+..++.||..+|..
T Consensus 204 ~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~------~~~~~~~~~~~~i~~le~el~~l~~~ 277 (312)
T PF00038_consen 204 SEKSSEELESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQ------RLDEEREEYQAEIAELEEELAELREE 277 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHH------HHHHHHHHHHHhhhccchhHHHHHHH
Confidence 334566677777778888888888888888888888888888887210 01111122234667778888888888
Q ss_pred HHHHHhhhh
Q psy11615 164 LQRAEGELE 172 (224)
Q Consensus 164 L~~AE~eLe 172 (224)
+..-.++.+
T Consensus 278 ~~~~~~ey~ 286 (312)
T PF00038_consen 278 MARQLREYQ 286 (312)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777666554
No 198
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=39.41 E-value=1.6e+02 Score=21.93 Aligned_cols=33 Identities=30% Similarity=0.466 Sum_probs=27.1
Q ss_pred HHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHH
Q psy11615 79 QHLRRMMKDMEGLQRAELDLANLQKELERARQE 111 (224)
Q Consensus 79 ~hl~~Mmkdle~Lq~AE~sl~dlQ~~Le~aqee 111 (224)
..|.++|...+.|.+.|..+...-++|-..-.+
T Consensus 12 e~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e 44 (74)
T PF12329_consen 12 EQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKE 44 (74)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 578999999999999999988888888764443
No 199
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=39.05 E-value=3e+02 Score=24.91 Aligned_cols=24 Identities=21% Similarity=0.412 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhh
Q psy11615 150 VCQLKQEIELLRNELQRAEGELED 173 (224)
Q Consensus 150 ls~l~eELe~vR~aL~~AE~eLe~ 173 (224)
+..+++++..++..+..++..++.
T Consensus 248 l~~~~~~l~~~~~~l~~~~~~l~~ 271 (423)
T TIGR01843 248 LTEAQARLAELRERLNKARDRLQR 271 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344456666666666666655554
No 200
>KOG4593|consensus
Probab=38.88 E-value=1.5e+02 Score=31.21 Aligned_cols=51 Identities=27% Similarity=0.431 Sum_probs=38.3
Q ss_pred HHHHHHHHHh-hHhHHHHHHHHHHHHHHHHHHHHHhHHH---HHHHHHHHHHHHH
Q psy11615 78 QQHLRRMMKD-MEGLQRAELDLANLQKELERARQEQENA---ASEKIKLERRLQE 128 (224)
Q Consensus 78 k~hl~~Mmkd-le~Lq~AE~sl~dlQ~~Le~aqee~~~v---~~EK~~LE~kl~~ 128 (224)
..||+.||+| +-.|..-+.++.++-+++...++-+.+| ..|+-.|+.++..
T Consensus 239 le~i~~~~~dqlqel~~l~~a~~q~~ee~~~~re~~~tv~~LqeE~e~Lqskl~~ 293 (716)
T KOG4593|consen 239 LEAINKNMKDQLQELEELERALSQLREELATLRENRETVGLLQEELEGLQSKLGR 293 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 5688999985 3344566778888888888888888888 4677777777766
No 201
>PRK10856 cytoskeletal protein RodZ; Provisional
Probab=38.77 E-value=38 Score=31.72 Aligned_cols=19 Identities=26% Similarity=0.420 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q psy11615 54 YILGTLILIALTICWYVYR 72 (224)
Q Consensus 54 i~Lv~slviavgGcWfAy~ 72 (224)
+.+++++|+|++|.||.+.
T Consensus 117 ~~lv~~vvl~l~~~wwwq~ 135 (331)
T PRK10856 117 TWLVLFVVIGLTGAWWWQN 135 (331)
T ss_pred HHHHHHHHHHHHHHHHhhc
Confidence 4566677788888887643
No 202
>PRK10772 cell division protein FtsL; Provisional
Probab=38.49 E-value=1.1e+02 Score=24.79 Aligned_cols=32 Identities=19% Similarity=0.243 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHhhhhhhchHHHHHHHHHhhHhHHH
Q psy11615 59 LILIALTICWYVYRQKESSQQHLRRMMKDMEGLQR 93 (224)
Q Consensus 59 slviavgGcWfAy~Qnr~Sk~hl~~Mmkdle~Lq~ 93 (224)
.|+++|.+|-|+.+ +++++-+++.-.++.|+.
T Consensus 28 ~Ll~~vv~SAl~VV---~~~h~tR~l~~ele~l~~ 59 (108)
T PRK10772 28 CLFIAVIVSAVTVV---TTAHHTRLLTAEREQLVL 59 (108)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 34455555555544 234444455555554443
No 203
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=38.14 E-value=1.6e+02 Score=26.98 Aligned_cols=20 Identities=20% Similarity=0.258 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHhhhhh
Q psy11615 154 KQEIELLRNELQRAEGELED 173 (224)
Q Consensus 154 ~eELe~vR~aL~~AE~eLe~ 173 (224)
+.++...+..|..+...+++
T Consensus 164 ~~~l~~~~~~l~~~~~~l~~ 183 (370)
T PRK11578 164 DAQIKRNQASLDTAKTNLDY 183 (370)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 34444445555555554443
No 204
>COG5393 Predicted membrane protein [Function unknown]
Probab=38.11 E-value=74 Score=26.88 Aligned_cols=33 Identities=21% Similarity=0.405 Sum_probs=24.0
Q ss_pred CCCchhHHH--HHHHHHHHHHHHHHHhhhhhhchH
Q psy11615 46 NSTSHVKDY--ILGTLILIALTICWYVYRQKESSQ 78 (224)
Q Consensus 46 er~~~wKDi--~Lv~slviavgGcWfAy~Qnr~Sk 78 (224)
...|||-.. ..++++++|.+||-+-.+|.++|.
T Consensus 77 ~~tyRl~a~~a~~~vl~vl~~i~ciW~lrks~~s~ 111 (131)
T COG5393 77 DPTYRLNAMIATTAVLLVLALIGCIWTLRKSRKST 111 (131)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Confidence 345888444 456677888888888888888875
No 205
>KOG0976|consensus
Probab=37.87 E-value=4.7e+02 Score=28.87 Aligned_cols=29 Identities=17% Similarity=0.258 Sum_probs=18.6
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy11615 144 AFSDLEVCQLKQEIELLRNELQRAEGELE 172 (224)
Q Consensus 144 ~~sd~Els~l~eELe~vR~aL~~AE~eLe 172 (224)
+.+-+||++..+-+..+-..|.-|+..++
T Consensus 413 e~~kneL~~a~ekld~mgthl~mad~Q~s 441 (1265)
T KOG0976|consen 413 EAAKNELQEALEKLDLMGTHLSMADYQLS 441 (1265)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Confidence 45666777766666666666666665554
No 206
>PF15556 Zwint: ZW10 interactor
Probab=37.80 E-value=3.3e+02 Score=25.15 Aligned_cols=88 Identities=20% Similarity=0.223 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHH-HHHHhhhhcccccccccccchhHHHHHHHHHHHHHHHHHHHHHhhhhhcC
Q psy11615 97 DLANLQKELERARQEQENAASEKIKLERR-LQEHQALQGDASDLKSSSAFSDLEVCQLKQEIELLRNELQRAEGELEDRC 175 (224)
Q Consensus 97 sl~dlQ~~Le~aqee~~~v~~EK~~LE~k-l~~~~~ak~ea~rl~~~r~~sd~Els~l~eELe~vR~aL~~AE~eLe~~~ 175 (224)
+|+.||.+-+.|-+..+.+...++--.+| |+. -++..|+ +++...|+-.||.+|.+||+.++..--.-.-.
T Consensus 106 A~eqlqaKKqva~eK~r~AQkqwqlqQeK~LQ~--Lae~sAE-vrerq~~~qqeLe~l~qeL~~lkqQa~qeqdK----- 177 (252)
T PF15556_consen 106 ALEQLQAKKQVAMEKLRAAQKQWQLQQEKHLQH--LAEVSAE-VRERQTGTQQELERLYQELGTLKQQAGQEQDK----- 177 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence 35555555555555555555544432212 211 1222232 22222455557777777777776643222222
Q ss_pred CCCChhhHHHHhhHHHHHHH
Q psy11615 176 WAPPPGLQHWLQLTHEIENK 195 (224)
Q Consensus 176 ws~P~~LQ~wLQlT~EvE~q 195 (224)
+..-|..|||-|.+-.+
T Consensus 178 ---LQR~qtfLqLl~tLq~k 194 (252)
T PF15556_consen 178 ---LQRHQTFLQLLYTLQGK 194 (252)
T ss_pred ---HHHHHHHHHHHHHHcCC
Confidence 33457889998876443
No 207
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=37.74 E-value=1.8e+02 Score=22.83 Aligned_cols=23 Identities=17% Similarity=0.380 Sum_probs=15.6
Q ss_pred HHHHHHHHhhhhhhchHHHHHHHHHhhHhHH
Q psy11615 62 IALTICWYVYRQKESSQQHLRRMMKDMEGLQ 92 (224)
Q Consensus 62 iavgGcWfAy~Qnr~Sk~hl~~Mmkdle~Lq 92 (224)
..++||-= ...+.++-.|..+|+
T Consensus 15 ~LLaGCAs--------~~kvdqLss~V~~L~ 37 (85)
T PRK09973 15 CLLSGCVN--------EQKVNQLASNVQTLN 37 (85)
T ss_pred HHHHHcCC--------chhHHHHHHHHHHHH
Confidence 45799953 247777777777773
No 208
>PF04011 LemA: LemA family; InterPro: IPR007156 The members of this family are related to the LemA protein P71452 from SWISSPROT. The exact molecular function of this protein is uncertain. It is predicted to be a transmembrane protein with an extracellular N terminus [].; PDB: 2ETD_A.
Probab=37.67 E-value=2.5e+02 Score=23.58 Aligned_cols=38 Identities=11% Similarity=0.413 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHh--hhhhhchHHHHHHHHHhhHhH
Q psy11615 54 YILGTLILIALTICWYV--YRQKESSQQHLRRMMKDMEGL 91 (224)
Q Consensus 54 i~Lv~slviavgGcWfA--y~Qnr~Sk~hl~~Mmkdle~L 91 (224)
+.+++++++.+.++|+. |..=...+..+..-..+++..
T Consensus 3 ~~ii~~i~~i~l~~~~~~~yN~L~~~~~~v~~a~s~I~~~ 42 (186)
T PF04011_consen 3 ILIILIIIVIILIVWFIMSYNSLVRLRNAVQEAWSNIDVQ 42 (186)
T ss_dssp ----------------------HHHHHHHHHHHHHHHHHH
T ss_pred eehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666777877 666667778888888777765
No 209
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=37.63 E-value=3e+02 Score=24.64 Aligned_cols=19 Identities=37% Similarity=0.494 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHhhhh
Q psy11615 154 KQEIELLRNELQRAEGELE 172 (224)
Q Consensus 154 ~eELe~vR~aL~~AE~eLe 172 (224)
..|...++..|..|...++
T Consensus 102 e~Ea~~lq~el~~ar~~~~ 120 (246)
T PF00769_consen 102 EEEAEELQEELEEAREDEE 120 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3677778888888877665
No 210
>COG4736 CcoQ Cbb3-type cytochrome oxidase, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=37.55 E-value=46 Score=24.57 Aligned_cols=27 Identities=11% Similarity=0.347 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhchH
Q psy11615 52 KDYILGTLILIALTICWYVYRQKESSQ 78 (224)
Q Consensus 52 KDi~Lv~slviavgGcWfAy~Qnr~Sk 78 (224)
.-+-+++..+.-+++.||||+=.++..
T Consensus 11 ~a~~t~~~~l~fiavi~~ayr~~~K~~ 37 (60)
T COG4736 11 DAWGTIAFTLFFIAVIYFAYRPGKKGE 37 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccchhh
Confidence 445677788888999999998666543
No 211
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=37.40 E-value=2.5e+02 Score=24.24 Aligned_cols=27 Identities=19% Similarity=0.218 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhhcCCCCC
Q psy11615 153 LKQEIELLRNELQRAEGELEDRCWAPP 179 (224)
Q Consensus 153 l~eELe~vR~aL~~AE~eLe~~~ws~P 179 (224)
++.++...+.+|..++..++.-...+|
T Consensus 114 ~~~~l~~~~~~l~~~~~~~~~~~i~AP 140 (322)
T TIGR01730 114 AQADLEAAKASLASAQLNLRYTEIRAP 140 (322)
T ss_pred HHHHHHHHHHHHHHHHHhhccCEEECC
Confidence 344555555555555555443333333
No 212
>PF14316 DUF4381: Domain of unknown function (DUF4381)
Probab=36.83 E-value=1.4e+02 Score=24.30 Aligned_cols=38 Identities=18% Similarity=0.530 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhchHHHHHHHHHhhHhHH
Q psy11615 54 YILGTLILIALTICWYVYRQKESSQQHLRRMMKDMEGLQ 92 (224)
Q Consensus 54 i~Lv~slviavgGcWfAy~Qnr~Sk~hl~~Mmkdle~Lq 92 (224)
++++++|++.++++||.|+..+. ..--+.-.+.|.+|.
T Consensus 25 ll~~lll~~~~~~~~~~~r~~~~-~~yrr~Al~~L~~l~ 62 (146)
T PF14316_consen 25 LLLALLLLLLILLLWRLWRRWRR-NRYRREALRELAQLE 62 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc-cHHHHHHHHHHHHcc
Confidence 33444444444555555544433 112223344455553
No 213
>KOG1853|consensus
Probab=36.72 E-value=3.8e+02 Score=25.57 Aligned_cols=24 Identities=29% Similarity=0.279 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhh
Q psy11615 150 VCQLKQEIELLRNELQRAEGELED 173 (224)
Q Consensus 150 ls~l~eELe~vR~aL~~AE~eLe~ 173 (224)
+-++++-++.-|.+.-+-+-.|++
T Consensus 75 ~e~~Kek~e~q~~q~y~q~s~Led 98 (333)
T KOG1853|consen 75 QERNKEKQEDQRVQFYQQESQLED 98 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444443
No 214
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=36.70 E-value=1.4e+02 Score=24.20 Aligned_cols=39 Identities=15% Similarity=0.188 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhhh---chHHHHHHHHHhhHhHH
Q psy11615 54 YILGTLILIALTICWYVYRQKE---SSQQHLRRMMKDMEGLQ 92 (224)
Q Consensus 54 i~Lv~slviavgGcWfAy~Qnr---~Sk~hl~~Mmkdle~Lq 92 (224)
|-+++.+|||+.+++|.....+ .-+..|.+....|+.-+
T Consensus 4 i~lvvG~iiG~~~~r~~~~~~~~q~~l~~eL~~~k~el~~yk 45 (128)
T PF06295_consen 4 IGLVVGLIIGFLIGRLTSSNQQKQAKLEQELEQAKQELEQYK 45 (128)
T ss_pred HHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHH
Confidence 4567777777777777665533 33455555555555543
No 215
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=36.69 E-value=4.4e+02 Score=26.20 Aligned_cols=40 Identities=15% Similarity=0.340 Sum_probs=20.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy11615 89 EGLQRAELDLANLQKELERARQEQENAASEKIKLERRLQE 128 (224)
Q Consensus 89 e~Lq~AE~sl~dlQ~~Le~aqee~~~v~~EK~~LE~kl~~ 128 (224)
+.|......+..+.+++...+.+......+=.++|.++..
T Consensus 38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~ 77 (420)
T COG4942 38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIAS 77 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555555555555444444455544443
No 216
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=36.27 E-value=1.8e+02 Score=21.60 Aligned_cols=18 Identities=50% Similarity=0.601 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy11615 149 EVCQLKQEIELLRNELQR 166 (224)
Q Consensus 149 Els~l~eELe~vR~aL~~ 166 (224)
+..+|++|++.++.+|..
T Consensus 48 e~~~Lk~E~e~L~~el~~ 65 (69)
T PF14197_consen 48 ENNKLKEENEALRKELEE 65 (69)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 555677788887777653
No 217
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=35.99 E-value=57 Score=28.41 Aligned_cols=24 Identities=29% Similarity=0.444 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhh
Q psy11615 149 EVCQLKQEIELLRNELQRAEGELE 172 (224)
Q Consensus 149 Els~l~eELe~vR~aL~~AE~eLe 172 (224)
||.++++||..+|..|..=|++..
T Consensus 37 EL~KvEeEI~TLrqvL~aKer~~~ 60 (162)
T PF04201_consen 37 ELAKVEEEIQTLRQVLAAKERHCA 60 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHH
Confidence 677789999999999988787553
No 218
>PRK07021 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=35.43 E-value=36 Score=28.33 Aligned_cols=11 Identities=9% Similarity=-0.206 Sum_probs=5.9
Q ss_pred HHHHHHHhhhh
Q psy11615 63 ALTICWYVYRQ 73 (224)
Q Consensus 63 avgGcWfAy~Q 73 (224)
|.||.||...+
T Consensus 32 g~gg~~~~~~~ 42 (162)
T PRK07021 32 AGAGYSWWLSK 42 (162)
T ss_pred HHHHHHHHhhc
Confidence 34556665543
No 219
>PF12553 DUF3742: Protein of unknown function (DUF3742); InterPro: IPR022213 This domain family is found in bacteria, and is approximately 50 amino acids in length. There is a single completely conserved residue Y that may be functionally important.
Probab=35.05 E-value=27 Score=25.08 Aligned_cols=16 Identities=25% Similarity=0.530 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHhh
Q psy11615 56 LGTLILIALTICWYVY 71 (224)
Q Consensus 56 Lv~slviavgGcWfAy 71 (224)
|++++++++++.|++-
T Consensus 1 laLll~f~~iaaw~~~ 16 (54)
T PF12553_consen 1 LALLLVFAAIAAWMAR 16 (54)
T ss_pred CHHHHHHHHHHHHHHh
Confidence 3566889999999974
No 220
>PRK10549 signal transduction histidine-protein kinase BaeS; Provisional
Probab=34.90 E-value=2.9e+02 Score=24.95 Aligned_cols=16 Identities=31% Similarity=0.476 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHH
Q psy11615 93 RAELDLANLQKELERA 108 (224)
Q Consensus 93 ~AE~sl~dlQ~~Le~a 108 (224)
..-.+|..|..+|++.
T Consensus 221 ~l~~~~n~m~~~l~~~ 236 (466)
T PRK10549 221 RLAQDFNQLASTLEKN 236 (466)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444555566665543
No 221
>PRK01156 chromosome segregation protein; Provisional
Probab=34.90 E-value=5.3e+02 Score=26.65 Aligned_cols=151 Identities=17% Similarity=0.158 Sum_probs=0.0
Q ss_pred hhhhhchHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-Hhh-------hhccccccccc
Q psy11615 71 YRQKESSQQHLRRMMKDMEGLQRAELDLANLQKELERARQEQENAASEKIKLERRLQE-HQA-------LQGDASDLKSS 142 (224)
Q Consensus 71 y~Qnr~Sk~hl~~Mmkdle~Lq~AE~sl~dlQ~~Le~aqee~~~v~~EK~~LE~kl~~-~~~-------ak~ea~rl~~~ 142 (224)
+.+-.....-+..+.+.++.|....+.+..+-++++....+......+..+++.++.. ... -..+-..++..
T Consensus 338 ~~e~~~~~~~~~~l~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~e~~~~ 417 (895)
T PRK01156 338 YNDYIKKKSRYDDLNNQILELEGYEMDYNSYLKSIESLKKKIEEYSKNIERMSAFISEILKIQEIDPDAIKKELNEINVK 417 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcccccchHHHHHHHHHHHHH
Q ss_pred ccchhHHHHHHHHHHHHHHH---HHHHHHhhhhhcCCCCChhhHHHHhhHHHHHHHHHHHhHhhHHHHHHHHHHHHHhhc
Q psy11615 143 SAFSDLEVCQLKQEIELLRN---ELQRAEGELEDRCWAPPPGLQHWLQLTHEIENKAYVKKKLMAEKQLQQAREARFDRG 219 (224)
Q Consensus 143 r~~sd~Els~l~eELe~vR~---aL~~AE~eLe~~~ws~P~~LQ~wLQlT~EvE~q~y~~Kk~~AekQL~~AkE~~EKik 219 (224)
-..-..++..|+.++..++. .|+.|..+|+ .|-.-|.++.+-=+---.-=...|+..-..-++++....+..++|+
T Consensus 418 ~~~l~~~i~~l~~~i~~l~~~~~el~~~~~~l~-~~~~Cp~c~~~~~~e~~~e~i~~~~~~i~~l~~~i~~l~~~~~~l~ 496 (895)
T PRK01156 418 LQDISSKVSSLNQRIRALRENLDELSRNMEMLN-GQSVCPVCGTTLGEEKSNHIINHYNEKKSRLEEKIREIEIEVKDID 496 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cCCCCCCCCCcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred ccc
Q psy11615 220 KCI 222 (224)
Q Consensus 220 K~~ 222 (224)
+.+
T Consensus 497 ~~~ 499 (895)
T PRK01156 497 EKI 499 (895)
T ss_pred HHH
No 222
>PF15456 Uds1: Up-regulated During Septation
Probab=34.65 E-value=2.6e+02 Score=22.96 Aligned_cols=76 Identities=28% Similarity=0.416 Sum_probs=39.7
Q ss_pred HhhHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH---h-hhhccccc----ccccccchhHHHHHHHHHH
Q psy11615 86 KDMEGLQRAELDLANLQKELERARQEQENAASEKIKLERRLQEH---Q-ALQGDASD----LKSSSAFSDLEVCQLKQEI 157 (224)
Q Consensus 86 kdle~Lq~AE~sl~dlQ~~Le~aqee~~~v~~EK~~LE~kl~~~---~-~ak~ea~r----l~~~r~~sd~Els~l~eEL 157 (224)
.++|+|++ .+.-|..+++-++. |-+||.++||- + ..-....+ -++..-.+|.++..+..-+
T Consensus 22 eEVe~LKk---El~~L~~R~~~lr~--------kl~le~k~RdAa~sl~~l~~~~~~~~~~~~~~~~~~eeel~~~~rk~ 90 (124)
T PF15456_consen 22 EEVEELKK---ELRSLDSRLEYLRR--------KLALESKIRDAAHSLSRLYSSSSRRARFSRESSLKAEEELAESDRKC 90 (124)
T ss_pred HHHHHHHH---HHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHhcCCCccccCCCcchHHHHHHHHHHHHhhH
Confidence 35555555 34445556665544 78899999992 1 11111110 0111123344555555666
Q ss_pred HHHHHHHHHHHhhhh
Q psy11615 158 ELLRNELQRAEGELE 172 (224)
Q Consensus 158 e~vR~aL~~AE~eLe 172 (224)
+.+-..|-++|..+.
T Consensus 91 ee~~~eL~~le~R~~ 105 (124)
T PF15456_consen 91 EELAQELWKLENRLA 105 (124)
T ss_pred HHHHHHHHHHHHHHH
Confidence 666677777776553
No 223
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=34.25 E-value=3.3e+02 Score=24.09 Aligned_cols=22 Identities=18% Similarity=0.178 Sum_probs=14.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHhh
Q psy11615 50 HVKDYILGTLILIALTICWYVY 71 (224)
Q Consensus 50 ~wKDi~Lv~slviavgGcWfAy 71 (224)
+|+=+.++++++++++++||.+
T Consensus 3 ~~~~~~~~l~~~~~~~~~~~~~ 24 (334)
T TIGR00998 3 YFLLLLVVLLIVVAGAYAIYWF 24 (334)
T ss_pred chHHHHHHHHHHHHHHHHHHHH
Confidence 5666666677777666666664
No 224
>PRK01919 tatB sec-independent translocase; Provisional
Probab=34.16 E-value=3.3e+02 Score=23.97 Aligned_cols=8 Identities=13% Similarity=-0.105 Sum_probs=4.5
Q ss_pred HHHHhhhh
Q psy11615 66 ICWYVYRQ 73 (224)
Q Consensus 66 GcWfAy~Q 73 (224)
|-|+...+
T Consensus 33 Gk~i~k~R 40 (169)
T PRK01919 33 GALFGRAQ 40 (169)
T ss_pred HHHHHHHH
Confidence 66665543
No 225
>PF12279 DUF3619: Protein of unknown function (DUF3619); InterPro: IPR022064 This protein is found in bacteria. Proteins in this family are about 140 amino acids in length. This protein has two conserved sequence motifs: AAR and DDLP.
Probab=34.07 E-value=2e+02 Score=23.93 Aligned_cols=60 Identities=15% Similarity=-0.045 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHhccccccc--chhhhhcccccccCCCCCCchhHHHHHHHHHHHHHHHHHH
Q psy11615 10 QLQQAREACEKLRKKRSSLV--GAFVSTHGKSIDDVDRNSTSHVKDYILGTLILIALTICWY 69 (224)
Q Consensus 10 ql~~a~e~~eki~kKr~s~~--gsf~~aH~~s~D~VDRer~~~wKDi~Lv~slviavgGcWf 69 (224)
.|..|+..|=--+|....+. ...-.++....--+-.+.++||--+-+++.++..|.|...
T Consensus 28 RL~aAR~~ALa~~k~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~pl~aLv~gL~~ 89 (131)
T PF12279_consen 28 RLAAARRQALARKKPEAPVATVQAPGLALAGSGGALFGRGGSWWRRLGLALPLLALVAGLAG 89 (131)
T ss_pred HHHHHHHHHHHhccchhhhhhhhccchhccccCcccccCCccHHHHHHHHHHHHHHHHHHHH
Confidence 47778877755555444421 1111111111111226678888888777666665555443
No 226
>PRK09458 pspB phage shock protein B; Provisional
Probab=33.95 E-value=73 Score=24.58 Aligned_cols=49 Identities=16% Similarity=0.339 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhhchHHHHHHHHHhhHhHHHHHHHHHHHHHHH
Q psy11615 55 ILGTLILIALTICWYVYRQKESSQQHLRRMMKDMEGLQRAELDLANLQKEL 105 (224)
Q Consensus 55 ~Lv~slviavgGcWfAy~Qnr~Sk~hl~~Mmkdle~Lq~AE~sl~dlQ~~L 105 (224)
..++.|++|-.=.|+-|+-++++..-++. .|...|+..-..-+-|++|+
T Consensus 10 liiF~ifVaPiWL~LHY~sk~~~~~~Ls~--~d~~~L~~L~~~A~rm~~RI 58 (75)
T PRK09458 10 LTIFVLFVAPIWLWLHYRSKRQGSQGLSQ--EEQQRLAQLTEKAERMRERI 58 (75)
T ss_pred HHHHHHHHHHHHHHHhhcccccCCCCCCH--HHHHHHHHHHHHHHHHHHHH
Confidence 34566777777788889887665544432 24444443333333344443
No 227
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=33.92 E-value=3.1e+02 Score=23.67 Aligned_cols=31 Identities=26% Similarity=0.373 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy11615 98 LANLQKELERARQEQENAASEKIKLERRLQE 128 (224)
Q Consensus 98 l~dlQ~~Le~aqee~~~v~~EK~~LE~kl~~ 128 (224)
...++.++++.+.+......+...|+.++.+
T Consensus 64 ~~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~ 94 (188)
T PF03962_consen 64 KQKRQNKLEKLQKEIEELEKKIEELEEKIEE 94 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556666666666666677777777766
No 228
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072).
Probab=33.83 E-value=5.2e+02 Score=26.21 Aligned_cols=13 Identities=0% Similarity=0.049 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHH
Q psy11615 93 RAELDLANLQKEL 105 (224)
Q Consensus 93 ~AE~sl~dlQ~~L 105 (224)
..-.+|..|+..+
T Consensus 389 ~l~~~~~~~~~~l 401 (968)
T TIGR02956 389 HMGRAIEAFRDTA 401 (968)
T ss_pred HHHHHHHHHHHHH
Confidence 3444566666665
No 229
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=33.63 E-value=3e+02 Score=23.35 Aligned_cols=39 Identities=23% Similarity=0.227 Sum_probs=24.7
Q ss_pred HHHHHHHHhhHhH-HHHHHHHHHHHHHHHHHHHHhHHHHH
Q psy11615 79 QHLRRMMKDMEGL-QRAELDLANLQKELERARQEQENAAS 117 (224)
Q Consensus 79 ~hl~~Mmkdle~L-q~AE~sl~dlQ~~Le~aqee~~~v~~ 117 (224)
..|...+.+.+.+ ..|+..+.+.+..|.+|+.|-.....
T Consensus 65 ~~I~~~l~~Ae~~~~eA~~~~~eye~~L~~Ar~EA~~ii~ 104 (181)
T PRK13454 65 GTITNDLAAAEELKQKAVEAEKAYNKALADARAEAQRIVA 104 (181)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555 56677777777778777776655544
No 230
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=33.29 E-value=2.9e+02 Score=23.18 Aligned_cols=19 Identities=47% Similarity=0.746 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHhhhh
Q psy11615 154 KQEIELLRNELQRAEGELE 172 (224)
Q Consensus 154 ~eELe~vR~aL~~AE~eLe 172 (224)
++|++.++.+|..++.+++
T Consensus 160 ~~ei~~lk~el~~~~~~~~ 178 (192)
T PF05529_consen 160 SEEIEKLKKELEKKEKEIE 178 (192)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3455555555555554443
No 231
>PF07047 OPA3: Optic atrophy 3 protein (OPA3); InterPro: IPR010754 OPA3 deficiency causes type III 3-methylglutaconic aciduria (MGA) in humans. This disease manifests with early bilateral optic atrophy, spasticity, extrapyramidal dysfunction, ataxia, and cognitive deficits, but normal longevity []. This family consists of several optic atrophy 3 (OPA3) proteins and related proteins from other eukaryotic species, the function is unknown.
Probab=33.27 E-value=2.5e+02 Score=22.89 Aligned_cols=58 Identities=14% Similarity=0.252 Sum_probs=36.5
Q ss_pred CCCchhHHHHHHH-----HHHHHHHHHHHhhhhhhchHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHH
Q psy11615 46 NSTSHVKDYILGT-----LILIALTICWYVYRQKESSQQHLRRMMKDMEGLQRAELDLANLQKELERARQ 110 (224)
Q Consensus 46 er~~~wKDi~Lv~-----slviavgGcWfAy~Qnr~Sk~hl~~Mmkdle~Lq~AE~sl~dlQ~~Le~aqe 110 (224)
+++|-=+=|++.. .+|.+|||....|=..|+++.--.+-- .-++.+.+|+.+++..+.
T Consensus 64 ~pL~e~~Aie~Gaell~E~fiF~Va~~li~~E~~Rs~~ke~~Ke~-------~~~~~l~~L~~~i~~L~~ 126 (134)
T PF07047_consen 64 RPLNEEKAIELGAELLGEAFIFSVAAGLIIYEYWRSARKEAKKEE-------ELQERLEELEERIEELEE 126 (134)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH-------HHHHHHHHHHHHHHHHHH
Confidence 4556656665544 577899999999999999987433322 223445555555544433
No 232
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=33.11 E-value=2.5e+02 Score=22.35 Aligned_cols=34 Identities=15% Similarity=0.169 Sum_probs=21.5
Q ss_pred hh-hhchHHHHHHHHHhhHhHHHHHHHHHHHHHHH
Q psy11615 72 RQ-KESSQQHLRRMMKDMEGLQRAELDLANLQKEL 105 (224)
Q Consensus 72 ~Q-nr~Sk~hl~~Mmkdle~Lq~AE~sl~dlQ~~L 105 (224)
-| .+-.-..+.+.|.....-+.+...|....+.+
T Consensus 14 Aq~~kIa~Vd~~~v~~~~~~~k~~~~~l~~~~~~~ 48 (158)
T PF03938_consen 14 AQSPKIAVVDVDKVFQESPAGKDAQAKLQEKFKAL 48 (158)
T ss_dssp CC--CEEEE-HHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred cccCcEEEeeHHHHHHhCHHHHHHHHHHHHHHHHH
Confidence 44 56666778888888877777776665554433
No 233
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=32.95 E-value=5.3e+02 Score=27.45 Aligned_cols=73 Identities=30% Similarity=0.377 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHH----hhhhcccccccccccchhHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy11615 100 NLQKELERARQEQENAASEKIKLERRLQEH----QALQGDASDLKSSSAFSDLEVCQLKQEIELLRNELQRAEGELE 172 (224)
Q Consensus 100 dlQ~~Le~aqee~~~v~~EK~~LE~kl~~~----~~ak~ea~rl~~~r~~sd~Els~l~eELe~vR~aL~~AE~eLe 172 (224)
+.+++++..+.+......+..+|+.+|-+- ..++.++..|.+...-.++++.+|.=++++.|...-..+..+.
T Consensus 462 e~~Eele~~~~e~~~lk~~~~~LQ~eLsEk~~~l~~~kee~s~l~s~~~K~~s~i~~l~I~lEk~rek~~kl~~ql~ 538 (775)
T PF10174_consen 462 ERQEELETYQKELKELKAKLESLQKELSEKELQLEDAKEEASKLASSQEKKDSEIERLEIELEKKREKHEKLEKQLE 538 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHhhccchhhhHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 445566666666666666777777777762 2688999988887777888899987666666666666655554
No 234
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=32.76 E-value=6.1e+02 Score=27.01 Aligned_cols=40 Identities=25% Similarity=0.228 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHhhhhhcCCCCChhhHHHHhhHHHHH
Q psy11615 154 KQEIELLRNELQRAEGELEDRCWAPPPGLQHWLQLTHEIE 193 (224)
Q Consensus 154 ~eELe~vR~aL~~AE~eLe~~~ws~P~~LQ~wLQlT~EvE 193 (224)
+.|+..++.....=|.+|+...-.--+.++++.-|-++++
T Consensus 672 e~E~~~l~~Ki~~Le~Ele~er~~~~e~~~kc~~Le~el~ 711 (769)
T PF05911_consen 672 EAEAEELQSKISSLEEELEKERALSEELEAKCRELEEELE 711 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHH
Confidence 4566666666655566655432223445555554444443
No 235
>PF11068 YlqD: YlqD protein; InterPro: IPR021297 This bacterial family of proteins has no known function. ; PDB: 4DCI_C.
Probab=32.46 E-value=2.9e+02 Score=22.91 Aligned_cols=60 Identities=23% Similarity=0.247 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhcCCCCChhhHHHHhhHHHHHHHHHHHhHhhHHHHHHHHH
Q psy11615 149 EVCQLKQEIELLRNELQRAEGELEDRCWAPPPGLQHWLQLTHEIENKAYVKKKLMAEKQLQQAR 212 (224)
Q Consensus 149 Els~l~eELe~vR~aL~~AE~eLe~~~ws~P~~LQ~wLQlT~EvE~q~y~~Kk~~AekQL~~Ak 212 (224)
.+++++.||.|+....+++..+....+ | .=..=++-.++-|-.-..-+|.....|+.+..
T Consensus 28 ~i~~~d~el~QLefq~kr~~~e~~~~~---~-~~~~~i~~q~~~e~~~r~e~k~~l~~ql~qv~ 87 (131)
T PF11068_consen 28 QIQQLDQELQQLEFQGKRMIKEIKKQN---A-QQIQSIQQQFEQEKQERLEQKNQLLQQLEQVQ 87 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTS---S-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcc---h-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 566778899999999999999876432 2 22233555677777766666666666666553
No 236
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=32.38 E-value=3.4e+02 Score=23.59 Aligned_cols=49 Identities=20% Similarity=0.365 Sum_probs=34.8
Q ss_pred HHHHHHHhhHhHH-HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy11615 80 HLRRMMKDMEGLQ-RAELDLANLQKELERARQEQENAASEKIKLERRLQE 128 (224)
Q Consensus 80 hl~~Mmkdle~Lq-~AE~sl~dlQ~~Le~aqee~~~v~~EK~~LE~kl~~ 128 (224)
.++.+...+|.=. -.++.+.|+...|.+++..--.+...+..+|+++.+
T Consensus 14 ~~n~~~dk~EDP~~~l~q~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~ 63 (219)
T TIGR02977 14 NLNALLDKAEDPEKMIRLIIQEMEDTLVEVRTTSARTIADKKELERRVSR 63 (219)
T ss_pred HHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444432 456677788888888888888888888888888877
No 237
>TIGR02887 spore_ger_x_C germination protein, Ger(x)C family. Members of this protein family are restricted to endospore-forming members of the Firmicutes lineage of bacteria, including the genera Bacillus, Clostridium, Thermoanaerobacter, Carboxydothermus, etc. Members are nearly all predicted lipoproteins and belong to probable transport operons, some of which have been characterized as crucial to germination in response to alanine. Members typically have been gene symbols gerKC, gerAC, gerYC, etc.
Probab=32.31 E-value=21 Score=32.62 Aligned_cols=15 Identities=47% Similarity=0.820 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHH
Q psy11615 54 YILGTLILIALTICW 68 (224)
Q Consensus 54 i~Lv~slviavgGcW 68 (224)
+++++++++.++|||
T Consensus 5 ~l~ll~~~~lLtGCw 19 (371)
T TIGR02887 5 ILLLLLALLLLTGCW 19 (371)
T ss_pred hHHHHHHHHHHCCcC
Confidence 455666667789999
No 238
>PF11381 DUF3185: Protein of unknown function (DUF3185); InterPro: IPR021521 Some members in this bacterial family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.
Probab=32.24 E-value=52 Score=24.13 Aligned_cols=29 Identities=14% Similarity=0.350 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHhhhhhhchHHHHHHHH
Q psy11615 57 GTLILIALTICWYVYRQKESSQQHLRRMM 85 (224)
Q Consensus 57 v~slviavgGcWfAy~Qnr~Sk~hl~~Mm 85 (224)
++++|.|++-+||.|....+.-+.++++.
T Consensus 5 i~Llv~GivLl~~G~~~~~S~~s~~s~~~ 33 (59)
T PF11381_consen 5 IALLVGGIVLLYFGYQASDSLGSQVSRAF 33 (59)
T ss_pred ehHHHHHHHHHHhhhhhhhhHHHHHHHHh
Confidence 57889999999999988888888877765
No 239
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=32.15 E-value=3.6e+02 Score=23.90 Aligned_cols=35 Identities=23% Similarity=0.371 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy11615 94 AELDLANLQKELERARQEQENAASEKIKLERRLQE 128 (224)
Q Consensus 94 AE~sl~dlQ~~Le~aqee~~~v~~EK~~LE~kl~~ 128 (224)
+...+.|+..+++.....+..+..+-..|-..+.+
T Consensus 80 l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~ 114 (312)
T PF00038_consen 80 LKEELEDLRRKYEEELAERKDLEEELESLRKDLDE 114 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Confidence 33445566666666666555555555555555554
No 240
>PF00672 HAMP: HAMP domain; InterPro: IPR003660 The HAMP linker domain (present in Histidine kinases, Adenyl cyclases, Methyl-accepting proteins and Phosphatases) is an approximately 50-amino acid alpha-helical region. It is found in bacterial sensor and chemotaxis proteins and in eukaryotic histidine kinases. The bacterial proteins are usually integral membrane proteins and part of a two-component signal transduction pathway. One or several copies of the HAMP domain can be found in association with other domains, such as the histidine kinase domain, the bacterial chemotaxis sensory transducer domain, the PAS repeat, the EAL domain, the GGDEF domain, the protein phosphatase 2C-like domain, the guanylate cyclase domain, or the response regulatory domain. It has been suggested that the HAMP domain possesses a role of regulating the phosphorylation or methylation of homodimeric receptors by transmitting the conformational changes in periplasmic ligand-binding domains to cytoplasmic signalling kinase and methyl-acceptor domains.; GO: 0004871 signal transducer activity, 0007165 signal transduction, 0016021 integral to membrane; PDB: 3PJX_A 3PJW_A 3ZX6_B 2Y20_B 2Y0Q_D 2Y21_H 3ZRW_C 2L7H_B 2LFS_B 2L7I_B ....
Probab=32.01 E-value=48 Score=22.46 Aligned_cols=15 Identities=27% Similarity=0.831 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHhhh
Q psy11615 58 TLILIALTICWYVYR 72 (224)
Q Consensus 58 ~slviavgGcWfAy~ 72 (224)
+.+++++..+|+..+
T Consensus 7 ~~~~~~~~~~~~~~~ 21 (70)
T PF00672_consen 7 IILLLSLLLAWLLAR 21 (70)
T ss_dssp HHHHHHHHHHHH--H
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444444444433
No 241
>COG1907 Predicted archaeal sugar kinases [General function prediction only]
Probab=31.93 E-value=74 Score=30.37 Aligned_cols=41 Identities=7% Similarity=0.166 Sum_probs=33.1
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhhchHHHHHHHHHhhHhH
Q psy11615 51 VKDYILGTLILIALTICWYVYRQKESSQQHLRRMMKDMEGL 91 (224)
Q Consensus 51 wKDi~Lv~slviavgGcWfAy~Qnr~Sk~hl~~Mmkdle~L 91 (224)
|.++-..++-+=.+||-||.++|.-.-..-++.+|+.|.+.
T Consensus 216 ie~fg~~l~~iQ~l~g~~f~~~e~~~~~~~V~~iv~~m~~~ 256 (312)
T COG1907 216 IESFGEALNEIQELGGKWFKKVEGGLQREDVKEIVDEMVEA 256 (312)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhceeccHHHHHHHHHHHHh
Confidence 34444555556678999999999999999999999999754
No 242
>COG5547 Small integral membrane protein [Function unknown]
Probab=31.84 E-value=62 Score=24.20 Aligned_cols=23 Identities=26% Similarity=0.294 Sum_probs=20.1
Q ss_pred chhHHHHHHHHHHHHHHHHHHhh
Q psy11615 49 SHVKDYILGTLILIALTICWYVY 71 (224)
Q Consensus 49 ~~wKDi~Lv~slviavgGcWfAy 71 (224)
-+||-+..++++++||++..|.-
T Consensus 28 GfwKtilviil~~lGv~iGl~~~ 50 (62)
T COG5547 28 GFWKTILVIILILLGVYIGLYKK 50 (62)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 48999999999999999988764
No 243
>KOG0971|consensus
Probab=31.77 E-value=1.5e+02 Score=32.73 Aligned_cols=17 Identities=12% Similarity=0.419 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHh
Q psy11615 153 LKQEIELLRNELQRAEG 169 (224)
Q Consensus 153 l~eELe~vR~aL~~AE~ 169 (224)
|.+||+++..+-+.+++
T Consensus 495 LreEld~~~g~~kel~~ 511 (1243)
T KOG0971|consen 495 LREELDMAKGARKELQK 511 (1243)
T ss_pred HHHHHHHHhhHHHHHHH
Confidence 45666666665555543
No 244
>PF14143 YrhC: YrhC-like protein
Probab=31.75 E-value=88 Score=23.82 Aligned_cols=39 Identities=21% Similarity=0.324 Sum_probs=30.7
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHHhhhhhhchHHHHH
Q psy11615 44 DRNSTSHVKDYILGTLILIALTICWYVYRQKESSQQHLR 82 (224)
Q Consensus 44 DRer~~~wKDi~Lv~slviavgGcWfAy~Qnr~Sk~hl~ 82 (224)
|.+..+-.+-..++..+++.++|.||-.++-+..+..+.
T Consensus 31 P~~~~~~~~~~~m~~~~~~~l~~a~~f~~rs~~~~~~L~ 69 (72)
T PF14143_consen 31 PIGAKETAQKYIMMGAICIFLAGAFLFFRRSKKYQKKLE 69 (72)
T ss_pred CccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445556677778889999999999999988877776654
No 245
>KOG2129|consensus
Probab=31.74 E-value=4.3e+02 Score=26.89 Aligned_cols=41 Identities=29% Similarity=0.257 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhh---------hc-CCCCChhhHHHHhhHHH
Q psy11615 151 CQLKQEIELLRNELQRAEGELE---------DR-CWAPPPGLQHWLQLTHE 191 (224)
Q Consensus 151 s~l~eELe~vR~aL~~AE~eLe---------~~-~ws~P~~LQ~wLQlT~E 191 (224)
..|+.|++.+|..|.+|++.-. .+ ....-+.||.-|+.|-|
T Consensus 256 ~~l~~EveRlrt~l~~Aqk~~~ek~~qy~~Ee~~~reen~rlQrkL~~e~e 306 (552)
T KOG2129|consen 256 DKLQAEVERLRTYLSRAQKSYQEKLMQYRAEEVDHREENERLQRKLINELE 306 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 3468999999999999985431 11 23444555655555433
No 246
>PRK10755 sensor protein BasS/PmrB; Provisional
Probab=31.68 E-value=3.4e+02 Score=23.78 Aligned_cols=16 Identities=19% Similarity=0.295 Sum_probs=8.4
Q ss_pred hchHHHHHHHHHhhHh
Q psy11615 75 ESSQQHLRRMMKDMEG 90 (224)
Q Consensus 75 r~Sk~hl~~Mmkdle~ 90 (224)
++....++++.+.++.
T Consensus 83 ~~~~~pl~~l~~~~~~ 98 (356)
T PRK10755 83 RWITRPLAELQKELEA 98 (356)
T ss_pred HHHHhHHHHHHHHHHh
Confidence 3445556666555443
No 247
>PF09771 Tmemb_18A: Transmembrane protein 188; InterPro: IPR019168 The function of this family of transmembrane proteins has not, as yet, been determined.
Probab=31.65 E-value=57 Score=27.22 Aligned_cols=33 Identities=21% Similarity=0.239 Sum_probs=25.1
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHhhhhhhchH
Q psy11615 45 RNSTSHVKDYILGTLILIALTICWYVYRQKESSQ 78 (224)
Q Consensus 45 Rer~~~wKDi~Lv~slviavgGcWfAy~Qnr~Sk 78 (224)
+|..-+|.=+..++|+++++|+ |+.+.=-..++
T Consensus 24 ~Pst~RWRiiL~v~svct~v~A-~~wL~Dp~ts~ 56 (125)
T PF09771_consen 24 QPSTTRWRIILVVVSVCTAVGA-WHWLMDPETSQ 56 (125)
T ss_pred CCcchhHHHHHHHHHHHHHHHH-HHHhcCccccc
Confidence 5778899999999999999988 55555444333
No 248
>PF08496 Peptidase_S49_N: Peptidase family S49 N-terminal; InterPro: IPR013703 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain is found to the N terminus of bacterial signal peptidases that belong to the MEROPS peptidase family S49 (protease IV family, clan SK) (see also IPR002142 from INTERPRO) [, ]. ; GO: 0004252 serine-type endopeptidase activity, 0005886 plasma membrane
Probab=31.60 E-value=2.7e+02 Score=23.66 Aligned_cols=26 Identities=12% Similarity=0.080 Sum_probs=17.5
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhhc
Q psy11615 51 VKDYILGTLILIALTICWYVYRQKES 76 (224)
Q Consensus 51 wKDi~Lv~slviavgGcWfAy~Qnr~ 76 (224)
..-++-++..|++|.|.-++..|+++
T Consensus 11 laK~vTvVvaI~~vv~~I~~~~~k~k 36 (155)
T PF08496_consen 11 LAKIVTVVVAILAVVGLIVAAAQKKK 36 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 34455566667777777777777766
No 249
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=31.46 E-value=3.8e+02 Score=23.90 Aligned_cols=122 Identities=18% Similarity=0.196 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy11615 94 AELDLANLQKELERARQEQENAASEKIKLERRLQEHQALQGDASDLKSSSAFSDLEVCQLKQEIELLRNELQRAEGELED 173 (224)
Q Consensus 94 AE~sl~dlQ~~Le~aqee~~~v~~EK~~LE~kl~~~~~ak~ea~rl~~~r~~sd~Els~l~eELe~vR~aL~~AE~eLe~ 173 (224)
.|....++.+++++....+..-..=-..+|+-+..-++ +.++- ...++-++.++..|-+++..-|...|..+.|
T Consensus 21 ~E~e~~~l~~k~~e~~~~~~~m~~i~~e~Ek~i~~~i~---e~~~~---~~~~~~~i~~~~~erdq~~~dL~s~E~sfsd 94 (207)
T PF05010_consen 21 KEEEEQELKKKYEELHKENQEMRKIMEEYEKTIAQMIE---EKQKQ---KELSEAEIQKLLKERDQAYADLNSLEKSFSD 94 (207)
T ss_pred hHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH---HHHhh---HHhHHHHHHHHHhhHHHHHHHHHHHHhhHHH
Confidence 34445666666665554333222222223333333221 11111 2334446666666666666666666643321
Q ss_pred c-------------CCCCChhhHHHH---hhHHHHHHHHHHHhHhhHHHHHHHHHHHHHhhccc
Q psy11615 174 R-------------CWAPPPGLQHWL---QLTHEIENKAYVKKKLMAEKQLQQAREARFDRGKC 221 (224)
Q Consensus 174 ~-------------~ws~P~~LQ~wL---QlT~EvE~q~y~~Kk~~AekQL~~AkE~~EKikK~ 221 (224)
- .+.--+.|.+.+ .-+..-+-+-|..=|..|+.+|..|-+..+.++++
T Consensus 95 l~~ryek~K~vi~~~k~NEE~Lkk~~~ey~~~l~~~eqry~aLK~hAeekL~~ANeei~~v~~~ 158 (207)
T PF05010_consen 95 LHKRYEKQKEVIEGYKKNEETLKKCIEEYEERLKKEEQRYQALKAHAEEKLEKANEEIAQVRSK 158 (207)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 123334444444 33455667889999999999999999999988865
No 250
>PF11293 DUF3094: Protein of unknown function (DUF3094); InterPro: IPR021444 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=31.32 E-value=85 Score=23.05 Aligned_cols=30 Identities=17% Similarity=0.302 Sum_probs=25.0
Q ss_pred cccccCCCCCCchhHHHHHHHHHHHHHHHH
Q psy11615 38 KSIDDVDRNSTSHVKDYILGTLILIALTIC 67 (224)
Q Consensus 38 ~s~D~VDRer~~~wKDi~Lv~slviavgGc 67 (224)
++..+|+|.+--.|-=+.+++.+|+|+||.
T Consensus 18 a~~~~VER~PFrP~~Ll~~li~Vv~gl~ll 47 (55)
T PF11293_consen 18 AGVNQVERKPFRPWRLLIVLIVVVIGLGLL 47 (55)
T ss_pred CCCCccccCCcchHHHHHHHHHHHHHHHHH
Confidence 456688888888999888888899998875
No 251
>TIGR01710 typeII_sec_gspG general secretion pathway protein G. This model represents GspG, protein G of the main terminal branch of the general secretion pathway, also called type II secretion. It transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens.
Probab=31.28 E-value=1.9e+02 Score=23.12 Aligned_cols=20 Identities=5% Similarity=0.154 Sum_probs=8.2
Q ss_pred hhhchHHHHHHHHHhhHhHH
Q psy11615 73 QKESSQQHLRRMMKDMEGLQ 92 (224)
Q Consensus 73 Qnr~Sk~hl~~Mmkdle~Lq 92 (224)
.....+.+......+|..++
T Consensus 27 ~~~~~~a~~~~~~~~l~~i~ 46 (134)
T TIGR01710 27 FSQADKAKAQVAKAQIKALK 46 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444443
No 252
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=31.21 E-value=2.8e+02 Score=22.36 Aligned_cols=15 Identities=33% Similarity=0.649 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHH
Q psy11615 96 LDLANLQKELERARQ 110 (224)
Q Consensus 96 ~sl~dlQ~~Le~aqe 110 (224)
.+..-++...+++..
T Consensus 66 ~d~~~l~~~~~rL~~ 80 (151)
T PF11559_consen 66 SDIERLQNDVERLKE 80 (151)
T ss_pred hHHHHHHHHHHHHHH
Confidence 344444444444443
No 253
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=30.90 E-value=4.5e+02 Score=27.47 Aligned_cols=25 Identities=28% Similarity=0.428 Sum_probs=11.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHH
Q psy11615 104 ELERARQEQENAASEKIKLERRLQE 128 (224)
Q Consensus 104 ~Le~aqee~~~v~~EK~~LE~kl~~ 128 (224)
+|..++++...+..--..|.+++.+
T Consensus 580 ~L~~l~e~~~~l~~~ae~LaeR~e~ 604 (717)
T PF10168_consen 580 ELQELQEERKSLRESAEKLAERYEE 604 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444
No 254
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=30.89 E-value=2.3e+02 Score=24.48 Aligned_cols=27 Identities=22% Similarity=0.341 Sum_probs=17.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy11615 146 SDLEVCQLKQEIELLRNELQRAEGELE 172 (224)
Q Consensus 146 sd~Els~l~eELe~vR~aL~~AE~eLe 172 (224)
+..++..++.++...+.++..|+.+|+
T Consensus 100 s~~~~~~~~~~~~~~~~~l~~~~~~l~ 126 (322)
T TIGR01730 100 SQADLDDAKAAVEAAQADLEAAKASLA 126 (322)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666677777777777666554
No 255
>PF15294 Leu_zip: Leucine zipper
Probab=30.60 E-value=4.6e+02 Score=24.63 Aligned_cols=71 Identities=31% Similarity=0.454 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy11615 101 LQKELERARQEQENAASEKIKLERRLQEHQALQGDASDLKSSSAFSDLEVCQLKQEIELLRNELQRAEGELE 172 (224)
Q Consensus 101 lQ~~Le~aqee~~~v~~EK~~LE~kl~~~~~ak~ea~rl~~~r~~sd~Els~l~eELe~vR~aL~~AE~eLe 172 (224)
|..+|-..+.....+..||-.|+..|.+-...........+ -.....+++.|+.-+..+..++.++-...+
T Consensus 144 Lk~rl~~le~~at~~l~Ek~kl~~~L~~lq~~~~~~~~k~~-~~~~~q~l~dLE~k~a~lK~e~ek~~~d~~ 214 (278)
T PF15294_consen 144 LKERLKSLEKQATSALDEKSKLEAQLKELQDEQGDQKGKKD-LSFKAQDLSDLENKMAALKSELEKALQDKE 214 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc-ccccccchhhHHHHHHHHHHHHHHHHHHHH
Confidence 33488888888889999999999999884332222221111 123455677777888888888777754443
No 256
>PF02656 DUF202: Domain of unknown function (DUF202); InterPro: IPR003807 This entry describes proteins of unknown function.
Probab=30.23 E-value=97 Score=22.03 Aligned_cols=42 Identities=17% Similarity=0.109 Sum_probs=26.0
Q ss_pred cccccccCCCCCCchhHHHHHHHHHHHHHHHHHHhhhhhhch
Q psy11615 36 HGKSIDDVDRNSTSHVKDYILGTLILIALTICWYVYRQKESS 77 (224)
Q Consensus 36 H~~s~D~VDRer~~~wKDi~Lv~slviavgGcWfAy~Qnr~S 77 (224)
.....++.+.+.....-...-++++++|++..++++..-+..
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ry~~~ 70 (73)
T PF02656_consen 29 RFFSLDHPSSSASRRVSKVLGLLLIVLGLLTLIYGIYRYRRR 70 (73)
T ss_pred HhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444433366666777778888888888887665443
No 257
>KOG4484|consensus
Probab=30.18 E-value=4.1e+02 Score=23.88 Aligned_cols=50 Identities=24% Similarity=0.403 Sum_probs=34.2
Q ss_pred HHHHHHHHhhHhHHH-----------HHHHHHHHHHHHHHHHHHhH---------HH-HHHHHHHHHHHHH
Q psy11615 79 QHLRRMMKDMEGLQR-----------AELDLANLQKELERARQEQE---------NA-ASEKIKLERRLQE 128 (224)
Q Consensus 79 ~hl~~Mmkdle~Lq~-----------AE~sl~dlQ~~Le~aqee~~---------~v-~~EK~~LE~kl~~ 128 (224)
+-|++=|+|+|.|-+ -|..|.||+++|.-++-.+- .| ..|+...|+.++.
T Consensus 27 s~iK~qiRd~eRlLkk~~LP~~Vr~e~er~L~~Lk~ql~~~~l~~k~rkif~ryrkVRFFErkKaeR~irr 97 (199)
T KOG4484|consen 27 SSIKNQIRDLERLLKKKDLPPEVREELERKLQDLKKQLDNHELLAKERKIFKRYRKVRFFERKKAERSIRR 97 (199)
T ss_pred HHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777755 46678999988877665432 22 5677777777766
No 258
>PHA01750 hypothetical protein
Probab=30.12 E-value=2.6e+02 Score=21.56 Aligned_cols=56 Identities=18% Similarity=0.303 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhchHHHHHHHHHhh-HhHHHHHHHHHHHHHHHHHHHHHh
Q psy11615 52 KDYILGTLILIALTICWYVYRQKESSQQHLRRMMKDM-EGLQRAELDLANLQKELERARQEQ 112 (224)
Q Consensus 52 KDi~Lv~slviavgGcWfAy~Qnr~Sk~hl~~Mmkdl-e~Lq~AE~sl~dlQ~~Le~aqee~ 112 (224)
-|++|+.+|.....-.-||.+|--. .|++|.||- +.. -.+.|.+|-.+++...-.+
T Consensus 2 ~~~VLvLtlmSTtaTtlFaIiqlYl---KIKq~lkdAvkeI--V~~ELdNL~~ei~~~kikq 58 (75)
T PHA01750 2 SETVLVLTLMSTTATTLFAIIQLYL---KIKQALKDAVKEI--VNSELDNLKTEIEELKIKQ 58 (75)
T ss_pred cchhhhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhH
Confidence 4788999998888889999988543 467777763 111 2245666666666655433
No 259
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=29.98 E-value=8.2e+02 Score=27.34 Aligned_cols=35 Identities=17% Similarity=0.200 Sum_probs=26.7
Q ss_pred chHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHH
Q psy11615 76 SSQQHLRRMMKDMEGLQRAELDLANLQKELERARQ 110 (224)
Q Consensus 76 ~Sk~hl~~Mmkdle~Lq~AE~sl~dlQ~~Le~aqe 110 (224)
-+..+|..|...++.+.+.+..|++++++++.+..
T Consensus 217 l~~~~i~~l~e~~~~~~~~~~~le~l~~~~~~l~~ 251 (1353)
T TIGR02680 217 LDDDELTDVADALEQLDEYRDELERLEALERALRN 251 (1353)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667888888888888888888888877776655
No 260
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=29.62 E-value=1.2e+02 Score=26.78 Aligned_cols=22 Identities=27% Similarity=0.661 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q psy11615 150 VCQLKQEIELLRNELQRAEGEL 171 (224)
Q Consensus 150 ls~l~eELe~vR~aL~~AE~eL 171 (224)
+-.++.||.++|.++..+++++
T Consensus 164 ~l~ie~~L~~v~~eIe~~~~~~ 185 (262)
T PF14257_consen 164 LLEIERELSRVRSEIEQLEGQL 185 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344556666666666555443
No 261
>cd00922 Cyt_c_Oxidase_IV Cytochrome c oxidase subunit IV. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit IV is the largest of the nuclear-encoded subunits. It binds ATP at the matrix side, leading to an allosteric inhibition of enzyme activity at high intramitochondrial ATP/ADP ratios. In mammals, subunit IV has a lung-specific isoform and a ubiquitously expressed isoform.
Probab=29.16 E-value=94 Score=25.78 Aligned_cols=43 Identities=16% Similarity=0.223 Sum_probs=28.8
Q ss_pred hhhhhcccccccCCCCCCchhHHHHHHHHHHHHHHHHHHhhhhhh
Q psy11615 31 AFVSTHGKSIDDVDRNSTSHVKDYILGTLILIALTICWYVYRQKE 75 (224)
Q Consensus 31 sf~~aH~~s~D~VDRer~~~wKDi~Lv~slviavgGcWfAy~Qnr 75 (224)
.|.++.+.+--+...+. ..||-+.-.++++|+++|..| +.|+.
T Consensus 55 lY~isfg~~~~e~~~~~-~ewk~v~~~~~~~i~~s~~~~-~~~r~ 97 (136)
T cd00922 55 LYRISFGETGPEMNAPT-GEWKTVFGGVLAFIGITGVIF-GLQRA 97 (136)
T ss_pred HhhhhhccccccccCCC-ccHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 55666665555554444 389999999999998877444 44444
No 262
>TIGR03789 pdsO proteobacterial sortase system OmpA family protein. A newly defined histidine kinase (TIGR03785) and response regulator (TIGR03787) gene pair occurs exclusively in Proteobacteria, mostly of marine origin, nearly all of which contain a subfamily 6 sortase (TIGR03784) and its single dedicated target protein (TIGR03788) adjacent to to the sortase. This protein family shows up in only in those species with the histidine kinase/response regulator gene pair, and often adjacent to that pair. It belongs to the OmpA protein family (pfam00691). Its function is unknown. We assign the gene symbol pdsO, for Proteobacterial Dedicated Sortase system OmpA family protein.
Probab=28.96 E-value=4e+02 Score=24.13 Aligned_cols=39 Identities=23% Similarity=0.350 Sum_probs=29.6
Q ss_pred HHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q psy11615 79 QHLRRMMKDMEGLQRAELDLANLQKELERARQEQENAAS 117 (224)
Q Consensus 79 ~hl~~Mmkdle~Lq~AE~sl~dlQ~~Le~aqee~~~v~~ 117 (224)
.||.+=-.+|-.|....++|..+..+.+.++........
T Consensus 84 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (239)
T TIGR03789 84 QHIAQQRQQMVALTQKQQALEQLEAEYQQAQVHLETLQQ 122 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577766688999999999998888888877765544443
No 263
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=28.85 E-value=19 Score=37.77 Aligned_cols=126 Identities=25% Similarity=0.333 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHHHHHHHHHHH---H
Q psy11615 92 QRAELDLANLQKELERARQEQENAASEKIKLERRLQEHQALQGDASDLKSSSAFSDLEVCQLKQEIELLRNELQRA---E 168 (224)
Q Consensus 92 q~AE~sl~dlQ~~Le~aqee~~~v~~EK~~LE~kl~~~~~ak~ea~rl~~~r~~sd~Els~l~eELe~vR~aL~~A---E 168 (224)
.+.+..+.+|...|+.+..........|..|+..|.+....=.+..+ .+......+..++.+++.+|..+..- -
T Consensus 211 ~kL~~E~~eL~~qLee~e~~~~~l~r~k~~L~~qLeelk~~leeEtr---~k~~L~~~l~~le~e~~~L~eqleeE~e~k 287 (859)
T PF01576_consen 211 AKLQSENSELTRQLEEAESQLSQLQREKSSLESQLEELKRQLEEETR---AKQALEKQLRQLEHELEQLREQLEEEEEAK 287 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHhh---hhhhhHHHHHHHHHHHHHHHHHHhhhhhhH
Confidence 44445555666666665555555555666666665552111111111 11222234444566777777766532 2
Q ss_pred hhhhhcCCCCChhhHHHHh--------hHHHHHH--HHHHHhHhhHHHHHHHHHHHHHhhcc
Q psy11615 169 GELEDRCWAPPPGLQHWLQ--------LTHEIEN--KAYVKKKLMAEKQLQQAREARFDRGK 220 (224)
Q Consensus 169 ~eLe~~~ws~P~~LQ~wLQ--------lT~EvE~--q~y~~Kk~~AekQL~~AkE~~EKikK 220 (224)
..++..--.....|..|=. .+.++|- +.+..+=..+..++..+...|..+.|
T Consensus 288 ~~l~~qlsk~~~El~~~k~K~e~e~~~~~EelEeaKKkL~~~L~el~e~le~~~~~~~~LeK 349 (859)
T PF01576_consen 288 SELERQLSKLNAELEQWKKKYEEEAEQRTEELEEAKKKLERKLQELQEQLEEANAKVSSLEK 349 (859)
T ss_dssp --------------------------------------------------------------
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2333222344555666622 2333321 22333333555566666665555544
No 264
>PRK08455 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=28.82 E-value=53 Score=28.35 Aligned_cols=16 Identities=13% Similarity=0.252 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHhh
Q psy11615 56 LGTLILIALTICWYVY 71 (224)
Q Consensus 56 Lv~slviavgGcWfAy 71 (224)
+++++++++|+.||.+
T Consensus 26 ~~llll~~~G~~~~~~ 41 (182)
T PRK08455 26 VVVLLLLIVGVIAMLL 41 (182)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444445445555544
No 265
>PF13042 DUF3902: Protein of unknown function (DUF3902)
Probab=28.76 E-value=47 Score=28.93 Aligned_cols=18 Identities=11% Similarity=0.364 Sum_probs=11.6
Q ss_pred HHHHHHHHH-HHHHhhhhh
Q psy11615 57 GTLILIALT-ICWYVYRQK 74 (224)
Q Consensus 57 v~slviavg-GcWfAy~Qn 74 (224)
++|++.|++ .||+.+.=-
T Consensus 8 ~iS~ifa~~G~~~llf~l~ 26 (161)
T PF13042_consen 8 MISFIFAVGGMIWLLFNLF 26 (161)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 455555555 499988653
No 266
>KOG3653|consensus
Probab=28.20 E-value=67 Score=32.64 Aligned_cols=23 Identities=17% Similarity=0.449 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHhhhhhhchHH
Q psy11615 57 GTLILIALTICWYVYRQKESSQQ 79 (224)
Q Consensus 57 v~slviavgGcWfAy~Qnr~Sk~ 79 (224)
+.++++.||+|+++|+|.|.++.
T Consensus 164 v~~l~~lvi~~~~~~r~~k~~~~ 186 (534)
T KOG3653|consen 164 VSLLAALVILAFLGYRQRKNARE 186 (534)
T ss_pred HHHHHHHHHHHHHHHHHhhcccc
Confidence 55566677889999999999997
No 267
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=27.87 E-value=3.2e+02 Score=26.29 Aligned_cols=32 Identities=19% Similarity=0.305 Sum_probs=24.0
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q psy11615 87 DMEGLQRAELDLANLQKELERARQEQENAASE 118 (224)
Q Consensus 87 dle~Lq~AE~sl~dlQ~~Le~aqee~~~v~~E 118 (224)
+++.+-..-.....++.+++..+.++-.+..+
T Consensus 28 ~vd~i~~ld~~~r~~~~~~~~l~~erN~~sk~ 59 (418)
T TIGR00414 28 DLEKLIALDDERKKLLSEIEELQAKRNELSKQ 59 (418)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778888888888888888888766666554
No 268
>PF09933 DUF2165: Predicted small integral membrane protein (DUF2165); InterPro: IPR018681 This family of various hypothetical prokaryotic proteins has no known function.
Probab=27.83 E-value=38 Score=29.09 Aligned_cols=14 Identities=14% Similarity=0.371 Sum_probs=12.8
Q ss_pred HHHHHHHHhhhhhh
Q psy11615 62 IALTICWYVYRQKE 75 (224)
Q Consensus 62 iavgGcWfAy~Qnr 75 (224)
++|||=||.+-|++
T Consensus 121 ~~iGGeWF~MWqs~ 134 (160)
T PF09933_consen 121 MVIGGEWFGMWQSQ 134 (160)
T ss_pred HHHHHHHHHHHHcc
Confidence 77999999999987
No 269
>KOG0994|consensus
Probab=27.57 E-value=9.2e+02 Score=27.89 Aligned_cols=13 Identities=23% Similarity=0.350 Sum_probs=7.7
Q ss_pred cchhhhhcccccc
Q psy11615 29 VGAFVSTHGKSID 41 (224)
Q Consensus 29 ~gsf~~aH~~s~D 41 (224)
++-|.-..+.++|
T Consensus 1480 v~~Flt~~~adp~ 1492 (1758)
T KOG0994|consen 1480 VRDFLTQPDADPD 1492 (1758)
T ss_pred HHHHhcCCCCCHH
Confidence 4556666665555
No 270
>PRK10557 hypothetical protein; Provisional
Probab=27.53 E-value=3.3e+02 Score=23.53 Aligned_cols=11 Identities=27% Similarity=0.552 Sum_probs=4.7
Q ss_pred HHHHHHHHHHH
Q psy11615 97 DLANLQKELER 107 (224)
Q Consensus 97 sl~dlQ~~Le~ 107 (224)
.+.-|++.|..
T Consensus 55 ~l~~l~~dirr 65 (192)
T PRK10557 55 RVFTVEKDLRR 65 (192)
T ss_pred HHHHHHHHHHH
Confidence 34444444444
No 271
>KOG1029|consensus
Probab=27.53 E-value=5.1e+02 Score=28.47 Aligned_cols=29 Identities=24% Similarity=0.436 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy11615 100 NLQKELERARQEQENAASEKIKLERRLQE 128 (224)
Q Consensus 100 dlQ~~Le~aqee~~~v~~EK~~LE~kl~~ 128 (224)
.||.+|.+.|+.....+-|||.|+.+++.
T Consensus 490 qlqarikE~q~kl~~l~~Ekq~l~~qlkq 518 (1118)
T KOG1029|consen 490 QLQARIKELQEKLQKLAPEKQELNHQLKQ 518 (1118)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 34457777777778888999999999987
No 272
>PRK12757 cell division protein FtsN; Provisional
Probab=27.40 E-value=30 Score=31.91 Aligned_cols=21 Identities=5% Similarity=0.292 Sum_probs=10.8
Q ss_pred HHHH-HHHHHHHHHHHhhhhhhc
Q psy11615 55 ILGT-LILIALTICWYVYRQKES 76 (224)
Q Consensus 55 ~Lv~-slviavgGcWfAy~Qnr~ 76 (224)
.|++ +||+.|||.||. .+||.
T Consensus 3 alava~lv~f~gGLyfi-~h~k~ 24 (256)
T PRK12757 3 ALAVAVLVTFIGGLYFI-THNKK 24 (256)
T ss_pred HHHHHHHHHHhhheEEE-ecCCC
Confidence 3444 445555555554 44764
No 273
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=27.35 E-value=8.3e+02 Score=26.56 Aligned_cols=14 Identities=50% Similarity=0.712 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHH
Q psy11615 155 QEIELLRNELQRAE 168 (224)
Q Consensus 155 eELe~vR~aL~~AE 168 (224)
+++..++.++..++
T Consensus 793 ~~~~~~~~~~~~~~ 806 (1163)
T COG1196 793 EELEELEEELEEAE 806 (1163)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444443
No 274
>PRK00708 sec-independent translocase; Provisional
Probab=27.19 E-value=3.8e+02 Score=24.19 Aligned_cols=21 Identities=5% Similarity=-0.016 Sum_probs=10.6
Q ss_pred HHHHhhhhh--hchHHHHHHHHH
Q psy11615 66 ICWYVYRQK--ESSQQHLRRMMK 86 (224)
Q Consensus 66 GcWfAy~Qn--r~Sk~hl~~Mmk 86 (224)
|-|+....+ ...+.++...++
T Consensus 33 Gk~v~k~R~~a~e~r~~~~e~~~ 55 (209)
T PRK00708 33 GKMTARMRKMAGEFRRQFDEALR 55 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 567765543 334444444444
No 275
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=27.19 E-value=3.6e+02 Score=22.32 Aligned_cols=44 Identities=18% Similarity=0.165 Sum_probs=20.9
Q ss_pred hchHHHHHHHHHh-----hHhHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q psy11615 75 ESSQQHLRRMMKD-----MEGLQRAELDLANLQKELERARQEQENAASE 118 (224)
Q Consensus 75 r~Sk~hl~~Mmkd-----le~Lq~AE~sl~dlQ~~Le~aqee~~~v~~E 118 (224)
+..-.=|..||.. -++|..||....+..+.++.++..-.....|
T Consensus 29 k~l~~pi~~~le~R~~~I~~~l~~Ae~~k~eAe~~~~~~e~~L~~A~~e 77 (167)
T PRK14475 29 KVLPKALAGALDAYAAKIQAELDEAQRLREEAQALLADVKAEREEAERQ 77 (167)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444556666544 2334455555555555554444444444333
No 276
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=27.11 E-value=8.4e+02 Score=26.53 Aligned_cols=23 Identities=22% Similarity=0.195 Sum_probs=11.0
Q ss_pred HHHHHHHHHhc---ccccccchhhhh
Q psy11615 13 QAREACEKLRK---KRSSLVGAFVST 35 (224)
Q Consensus 13 ~a~e~~eki~k---Kr~s~~gsf~~a 35 (224)
.|+.+-+-||+ .|.+|+.+..+.
T Consensus 553 ~a~~~i~~lk~~~~gr~tflpl~~i~ 578 (1163)
T COG1196 553 VAKKAIEFLKENKAGRATFLPLDRIK 578 (1163)
T ss_pred HHHHHHHHHhhcCCCccccCchhhhc
Confidence 45555555544 344554444443
No 277
>KOG0804|consensus
Probab=27.03 E-value=2.9e+02 Score=27.97 Aligned_cols=17 Identities=18% Similarity=0.325 Sum_probs=8.7
Q ss_pred cchhHHHHHHHHHHHHH
Q psy11615 144 AFSDLEVCQLKQEIELL 160 (224)
Q Consensus 144 ~~sd~Els~l~eELe~v 160 (224)
..-|..+..|+++|..+
T Consensus 431 ~s~d~~I~dLqEQlrDl 447 (493)
T KOG0804|consen 431 GSKDEKITDLQEQLRDL 447 (493)
T ss_pred HHHHHHHHHHHHHHHhH
Confidence 33444555565555444
No 278
>PF06388 DUF1075: Protein of unknown function (DUF1075); InterPro: IPR009432 This family consists of several eukaryotic proteins of unknown function.
Probab=26.98 E-value=43 Score=28.64 Aligned_cols=40 Identities=10% Similarity=0.115 Sum_probs=26.5
Q ss_pred cccccCC----CCCCchhHHHHHH----HHHHHHHHHHHHhhhhhhch
Q psy11615 38 KSIDDVD----RNSTSHVKDYILG----TLILIALTICWYVYRQKESS 77 (224)
Q Consensus 38 ~s~D~VD----Rer~~~wKDi~Lv----~slviavgGcWfAy~Qnr~S 77 (224)
++.|||| .+....-++-.+| +.|++.|+||.++++--|.+
T Consensus 70 Ks~~eIPe~Vs~e~l~~arnk~RIkv~~~Mi~lTiiGc~~mv~sGK~a 117 (146)
T PF06388_consen 70 KSEEEIPETVSFEMLDAARNKARIKVCYIMIALTIIGCIAMVISGKRA 117 (146)
T ss_pred CChhhCcCccCHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 4556666 3444455555555 67788899999987766543
No 279
>PF12911 OppC_N: N-terminal TM domain of oligopeptide transport permease C
Probab=26.92 E-value=58 Score=21.93 Aligned_cols=36 Identities=22% Similarity=0.412 Sum_probs=25.3
Q ss_pred HHHHHHHhcccccccchhhhhcccccccCCCCCCchhHHHHHHHHHHHHHHHHHHhhh
Q psy11615 15 REACEKLRKKRSSLVGAFVSTHGKSIDDVDRNSTSHVKDYILGTLILIALTICWYVYR 72 (224)
Q Consensus 15 ~e~~eki~kKr~s~~gsf~~aH~~s~D~VDRer~~~wKDi~Lv~slviavgGcWfAy~ 72 (224)
++...++++.|..++|. +++++.+++|+.|-||+-.
T Consensus 6 ~~~~~~f~~nk~a~~gl----------------------~il~~~vl~ai~~p~~~p~ 41 (56)
T PF12911_consen 6 KDAWRRFRRNKLAVIGL----------------------IILLILVLLAIFAPFISPY 41 (56)
T ss_pred HHHHHHHHhCchHHHHH----------------------HHHHHHHHHHHHHHHcCCC
Confidence 45556666666666664 4678888999999888643
No 280
>COG0682 Lgt Prolipoprotein diacylglyceryltransferase [Cell envelope biogenesis, outer membrane]
Probab=26.91 E-value=67 Score=30.01 Aligned_cols=56 Identities=16% Similarity=0.182 Sum_probs=37.5
Q ss_pred Hhcccccccchhhhhccc--ccc----cCCCCCC----chhHHHHHHHHHHHHHHHHHHhhhhhhc
Q psy11615 21 LRKKRSSLVGAFVSTHGK--SID----DVDRNST----SHVKDYILGTLILIALTICWYVYRQKES 76 (224)
Q Consensus 21 i~kKr~s~~gsf~~aH~~--s~D----~VDRer~----~~wKDi~Lv~slviavgGcWfAy~Qnr~ 76 (224)
-.+|+++++|.|.+.-|- ..- +.|..-. ..+-+|.-+.+|++|+++.|+++...+.
T Consensus 214 ~~~~~G~v~~~y~~~Yg~~Rf~iE~~R~~~~~~~~~~~~~mgqilSi~mIl~Gi~~~~~~~~k~~~ 279 (287)
T COG0682 214 PLLKSGFVFGLYLIGYGLFRFFIEFFREPDLMLGGLIRILMGQILSIPMILLGLWLIIYLYKKAKK 279 (287)
T ss_pred ccCCCeeeehhHHHHHHHHHHhhhhhhcCchhhhhHHHHhhhHHHHHHHHHHHHHHHHHHHHhccC
Confidence 346789999999998872 221 2221111 1146788888999999999999876544
No 281
>KOG0483|consensus
Probab=26.75 E-value=1.2e+02 Score=26.89 Aligned_cols=25 Identities=28% Similarity=0.644 Sum_probs=23.0
Q ss_pred HHHHhhhhhhchHHHHHHHHHhhHhHHH
Q psy11615 66 ICWYVYRQKESSQQHLRRMMKDMEGLQR 93 (224)
Q Consensus 66 GcWfAy~Qnr~Sk~hl~~Mmkdle~Lq~ 93 (224)
-.|| |||+++-..+++-.|=+.|++
T Consensus 95 avWF---QNRRARwK~kqlE~d~~~Lk~ 119 (198)
T KOG0483|consen 95 AVWF---QNRRARWKTKQLEKDYESLKR 119 (198)
T ss_pred HHHH---hhccccccchhhhhhHHHHHH
Confidence 4688 999999999999999999988
No 282
>COG4792 EscU Type III secretory pathway, component EscU [Intracellular trafficking and secretion]
Probab=26.74 E-value=1.3e+02 Score=29.03 Aligned_cols=101 Identities=17% Similarity=0.137 Sum_probs=60.2
Q ss_pred chHHHHHHHHHHHHHHhcccccc----cchhhhhcc--cccccCCC----------CCCchhHHHH-HHHHHHHHHHHHH
Q psy11615 6 MAEKQLQQAREACEKLRKKRSSL----VGAFVSTHG--KSIDDVDR----------NSTSHVKDYI-LGTLILIALTICW 68 (224)
Q Consensus 6 ~a~~ql~~a~e~~eki~kKr~s~----~gsf~~aH~--~s~D~VDR----------er~~~wKDi~-Lv~slviavgGcW 68 (224)
+-.|++.+++-..|=+|--=..+ +..| ..|| ++.-..|- ...-+|=-+. .+..++++|.-.|
T Consensus 126 ~~~K~ifS~rS~vEl~KS~lKV~vLslif~f-~l~~~~~t~~~lp~CG~~C~~~Vv~~~~~~L~~g~~~~ylv~sv~Dy~ 204 (349)
T COG4792 126 QNAKRIFSLRSVVELLKSLLKVVVLSLIFWF-MLHGYANTFLYLPGCGLYCALPVVSFLLRLLWVGVAVGYLVFSVADYA 204 (349)
T ss_pred hhHHHHHhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678888888888776322211 1122 1233 44445552 1122222222 4556788888889
Q ss_pred Hhhhhh----hchHHHHHHHHHhhHhHHHHHHHHHHHHHHHHH
Q psy11615 69 YVYRQK----ESSQQHLRRMMKDMEGLQRAELDLANLQKELER 107 (224)
Q Consensus 69 fAy~Qn----r~Sk~hl~~Mmkdle~Lq~AE~sl~dlQ~~Le~ 107 (224)
|-|.|. |-||..++|=-|||||=-...+.-..+|.+++-
T Consensus 205 fqr~~~~K~lkMSKdEVkRE~Kd~eG~PeiKskRRq~~~Eiqs 247 (349)
T COG4792 205 FQRYQILKELKMSKDEVKREYKDMEGDPEIKSKRRQLHSEIQS 247 (349)
T ss_pred HHHHHHHHHhccCHHHHHHHHhcccCCchhhHHHHHHHHHHhc
Confidence 977664 679999999999999976655555555555443
No 283
>PLN02715 lipid phosphate phosphatase
Probab=26.72 E-value=50 Score=31.27 Aligned_cols=43 Identities=26% Similarity=0.331 Sum_probs=27.7
Q ss_pred ccchhhhhcccccccCCCCCCchhHHHHHHHHHHHHHHHHHHhhhhhhch
Q psy11615 28 LVGAFVSTHGKSIDDVDRNSTSHVKDYILGTLILIALTICWYVYRQKESS 77 (224)
Q Consensus 28 ~~gsf~~aH~~s~D~VDRer~~~wKDi~Lv~slviavgGcWfAy~Qnr~S 77 (224)
+++++.++=+.+.| ..|||-|+... .++|++-.||.|+|.-.+
T Consensus 229 ll~A~lIalSRv~D-----y~Hh~sDVlaG--~lLG~~~a~~~y~~~fp~ 271 (327)
T PLN02715 229 LLAACLVGISRVDD-----YWHHWQDVFAG--ALIGILVAAFCYRQFYPN 271 (327)
T ss_pred HHHHHHHHHHHHHc-----CCCCHHHHHHH--HHHHHHHHHHHHHHHcCC
Confidence 34455666666644 45899999544 556666677888876433
No 284
>KOG0288|consensus
Probab=26.57 E-value=3e+02 Score=27.68 Aligned_cols=38 Identities=32% Similarity=0.344 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHH
Q psy11615 92 QRAELDLANLQKELERARQEQ-ENAASEKIKLERRLQEH 129 (224)
Q Consensus 92 q~AE~sl~dlQ~~Le~aqee~-~~v~~EK~~LE~kl~~~ 129 (224)
+.-|..|.+||++.-...++. +.++++|.+++++++.+
T Consensus 51 ~~~E~~l~~Lq~e~~~l~e~~v~~~a~~~~~t~~~~~~e 89 (459)
T KOG0288|consen 51 QEKELELNRLQEENTQLNEERVREEATEKTLTVDVLIAE 89 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445777888888888777765 34577888888877763
No 285
>PRK01770 sec-independent translocase; Provisional
Probab=26.57 E-value=4.4e+02 Score=23.06 Aligned_cols=29 Identities=28% Similarity=0.426 Sum_probs=15.9
Q ss_pred HHHHHHHhhHhHHHHHHHHHHHHHHHHHH
Q psy11615 80 HLRRMMKDMEGLQRAELDLANLQKELERA 108 (224)
Q Consensus 80 hl~~Mmkdle~Lq~AE~sl~dlQ~~Le~a 108 (224)
-+++|+.+...=-.-|..+.+|++.|.++
T Consensus 38 ~~R~~~~~~k~e~~~E~~~~El~~~l~~~ 66 (171)
T PRK01770 38 ALRSLATTVQNELTQELKLQELQDSLKKV 66 (171)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 34556666554444445566666666554
No 286
>PF07139 DUF1387: Protein of unknown function (DUF1387); InterPro: IPR009816 This family represents a conserved region approximately 300 residues long within a number of hypothetical proteins of unknown function that seem to be restricted to mammals.
Probab=26.50 E-value=3e+02 Score=26.22 Aligned_cols=92 Identities=21% Similarity=0.211 Sum_probs=47.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh-hhhcccccccccccchhHHHHHHHHHHHHHHHHHHHH-
Q psy11615 90 GLQRAELDLANLQKELERARQEQENAASEKIKLERRLQEHQ-ALQGDASDLKSSSAFSDLEVCQLKQEIELLRNELQRA- 167 (224)
Q Consensus 90 ~Lq~AE~sl~dlQ~~Le~aqee~~~v~~EK~~LE~kl~~~~-~ak~ea~rl~~~r~~sd~Els~l~eELe~vR~aL~~A- 167 (224)
|..++.++|.+||.-|-.=.- ....|=.++-++-.++. ..+..|+.|+. .+|.-.+=-+++|..||+.++.=
T Consensus 183 S~k~ik~~F~~l~~cL~dREv---aLl~EmdkVK~EAmeiL~aRqkkAeeLkr---ltd~A~~MsE~Ql~ELRadIK~fv 256 (302)
T PF07139_consen 183 SIKKIKQTFAELQSCLMDREV---ALLAEMDKVKAEAMEILDARQKKAEELKR---LTDRASQMSEEQLAELRADIKHFV 256 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhhcCHHHHHHHHHHHHHHh
Confidence 567788888888887765111 01111111111111111 23444443332 23322222278999999988764
Q ss_pred -HhhhhhcCCCCChhhHHHHhhHHHHHH
Q psy11615 168 -EGELEDRCWAPPPGLQHWLQLTHEIEN 194 (224)
Q Consensus 168 -E~eLe~~~ws~P~~LQ~wLQlT~EvE~ 194 (224)
||.. -+.|..-...||.+|-
T Consensus 257 s~rk~-------de~lg~~~rf~~d~~~ 277 (302)
T PF07139_consen 257 SERKY-------DEELGRAARFTCDPEQ 277 (302)
T ss_pred hhhhh-------HHHHhHhhhcccCHHH
Confidence 4433 3456666677776664
No 287
>PRK15030 multidrug efflux system transporter AcrA; Provisional
Probab=26.44 E-value=4.2e+02 Score=24.74 Aligned_cols=20 Identities=10% Similarity=0.124 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHhhhhh
Q psy11615 154 KQEIELLRNELQRAEGELED 173 (224)
Q Consensus 154 ~eELe~vR~aL~~AE~eLe~ 173 (224)
+.++.+.+.+|..|+..|++
T Consensus 154 ~a~~~~a~a~l~~a~~~l~~ 173 (397)
T PRK15030 154 NAAVTAAKAAVETARINLAY 173 (397)
T ss_pred HHHHHHHHHHHHHHHHhhcC
Confidence 45666677777777766654
No 288
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=26.31 E-value=3.6e+02 Score=22.03 Aligned_cols=43 Identities=19% Similarity=0.417 Sum_probs=22.8
Q ss_pred hhhchHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHhHHH
Q psy11615 73 QKESSQQHLRRMMKDMEGLQRAELDLANLQKELERARQEQENA 115 (224)
Q Consensus 73 Qnr~Sk~hl~~Mmkdle~Lq~AE~sl~dlQ~~Le~aqee~~~v 115 (224)
++.....-|-++|+..+.++.....+..|+.++...+..+.+.
T Consensus 45 ~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~ 87 (120)
T PF12325_consen 45 ERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTL 87 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555555555555555555555544443
No 289
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=26.08 E-value=70 Score=25.54 Aligned_cols=9 Identities=0% Similarity=-0.160 Sum_probs=3.8
Q ss_pred HHHHHHHHh
Q psy11615 62 IALTICWYV 70 (224)
Q Consensus 62 iavgGcWfA 70 (224)
+.+++||+.
T Consensus 15 ~~~~~~~~~ 23 (130)
T PF12273_consen 15 FLFLFYCHN 23 (130)
T ss_pred HHHHHHHHH
Confidence 334444443
No 290
>PF11743 DUF3301: Protein of unknown function (DUF3301); InterPro: IPR021732 This family is conserved in Proteobacteria, but the function is not known.
Probab=26.02 E-value=1.1e+02 Score=23.80 Aligned_cols=17 Identities=41% Similarity=0.460 Sum_probs=8.5
Q ss_pred hhhhchHHHHHHHHHhh
Q psy11615 72 RQKESSQQHLRRMMKDM 88 (224)
Q Consensus 72 ~Qnr~Sk~hl~~Mmkdl 88 (224)
.|.-.+..+.++.-+++
T Consensus 20 ~~~E~A~~~a~~~C~~~ 36 (97)
T PF11743_consen 20 RQRERALQAARRACKRQ 36 (97)
T ss_pred hHHHHHHHHHHHHHHHc
Confidence 33444555555555543
No 291
>PHA00350 putative assembly protein
Probab=25.89 E-value=47 Score=32.22 Aligned_cols=52 Identities=13% Similarity=0.035 Sum_probs=29.0
Q ss_pred HHhcccccccchhhhhcccccccCCCCCCchhHHHHH--HHHHHHHHHHHHHhhh
Q psy11615 20 KLRKKRSSLVGAFVSTHGKSIDDVDRNSTSHVKDYIL--GTLILIALTICWYVYR 72 (224)
Q Consensus 20 ki~kKr~s~~gsf~~aH~~s~D~VDRer~~~wKDi~L--v~slviavgGcWfAy~ 72 (224)
.-.|....+|+-|-++|.-.--+++... +-|+.-.+ ++.+++++.|+||.+.
T Consensus 192 ~~~k~~k~~f~lYkSt~tg~~~~~~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~ 245 (399)
T PHA00350 192 IEQRIYKDHYFLYYSTHTGSAGQVGEAK-ALDINPKWKSLVALLLGILSFGYYFY 245 (399)
T ss_pred ceeecChhHhcCeeeeccCCcccccccc-cchhchHHHHHHHHHHHHhhhhhhhh
Confidence 3467778889999999974444555322 33333333 4444455555555443
No 292
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=25.81 E-value=4.2e+02 Score=22.57 Aligned_cols=119 Identities=19% Similarity=0.249 Sum_probs=66.1
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHhhhhhhchHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy11615 45 RNSTSHVKDYILGTLILIALTICWYVYRQKESSQQHLRRMMKDMEGLQRAELDLANLQKELERARQEQENAASEKIKLER 124 (224)
Q Consensus 45 Rer~~~wKDi~Lv~slviavgGcWfAy~Qnr~Sk~hl~~Mmkdle~Lq~AE~sl~dlQ~~Le~aqee~~~v~~EK~~LE~ 124 (224)
+.+-..|.|-+---++-++-+..=|+-..+-+ -.-|.... |=+.....-..+.+|+.....-+.+-..+..+=.++..
T Consensus 61 k~ha~~w~d~~~P~ii~~~~~I~~Y~~~f~sy-Y~~L~~~i-d~~~~~~~~~~i~~L~~~i~~~q~~~~~~i~~L~~f~~ 138 (184)
T PF05791_consen 61 KEHAKEWLDTIKPQIIDLNQDIINYNTTFQSY-YDTLVEAI-DQKDKEDLKEIIEDLQDQIQKNQDKVQALINELNDFKD 138 (184)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH-HHT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHH-HHHHHHHH-CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456777766544444444443343222111 12233333 44444444456777888777777777777777666666
Q ss_pred HHHHH-hhhhcccccccccccchhHHHHHHHHHHHHHHHHHH
Q psy11615 125 RLQEH-QALQGDASDLKSSSAFSDLEVCQLKQEIELLRNELQ 165 (224)
Q Consensus 125 kl~~~-~~ak~ea~rl~~~r~~sd~Els~l~eELe~vR~aL~ 165 (224)
+|..- ..-+..+..+...-.+..+.+..|+.+|+.++.+..
T Consensus 139 ~l~~D~~~l~~~~~~l~~~l~~~~g~I~~L~~~I~~~~~~I~ 180 (184)
T PF05791_consen 139 KLQKDSRNLKTDVDELQSILAGENGDIPQLQKQIENLNEEIK 180 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHTGGG-
T ss_pred HHHHHHHHHHHhHHHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence 66643 245555566665555666777777788877776543
No 293
>KOG0243|consensus
Probab=25.75 E-value=8.7e+02 Score=27.03 Aligned_cols=35 Identities=29% Similarity=0.265 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy11615 94 AELDLANLQKELERARQEQENAASEKIKLERRLQE 128 (224)
Q Consensus 94 AE~sl~dlQ~~Le~aqee~~~v~~EK~~LE~kl~~ 128 (224)
.+..|.++++.+---.+...-...+|..++.+|++
T Consensus 460 ~~~~l~~~~e~~~~~~~~~~~l~~~~~~~k~~L~~ 494 (1041)
T KOG0243|consen 460 LEKQLKDLTELYMNQLEIKELLKEEKEKLKSKLQN 494 (1041)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444443344444556666666666655
No 294
>PF07006 DUF1310: Protein of unknown function (DUF1310); InterPro: IPR010738 This family consists of several hypothetical proteins of around 125 residues in length. Members of this family seem to be specific to Listeria and Streptococcus species. The function of this family is unknown.
Probab=25.69 E-value=57 Score=26.79 Aligned_cols=18 Identities=33% Similarity=0.547 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHhhhhhh
Q psy11615 58 TLILIALTICWYVYRQKE 75 (224)
Q Consensus 58 ~slviavgGcWfAy~Qnr 75 (224)
+++++++||||+...++.
T Consensus 11 l~~i~~~~g~~~~~~~~~ 28 (122)
T PF07006_consen 11 LLVIIGIGGGFYMDQQKE 28 (122)
T ss_pred HHHHHhheeEEEEEEhHH
Confidence 444555677766554444
No 295
>PF02529 PetG: Cytochrome B6-F complex subunit 5; InterPro: IPR003683 This family consists of cytochrome b6/f complex subunit 5 (PetG). The cytochrome bf complex, found in green plants, eukaryotic algae and cyanobacteria, connects photosystem I to photosystem II in the electron transport chain, functioning as a plastoquinol:plastocyanin/cytochrome c6 oxidoreductase []. The purified complex from the unicellular alga Chlamydomonas reinhardtii contains seven subunits; namely four high molecular weight subunits (cytochrome f, Rieske iron-sulphur protein, cytochrome b6, and subunit IV) and three approximately miniproteins (PetG, PetL, and PetX) []. Stoichiometry measurements are consistent with every subunit being present as two copies per b6/f dimer. The absence of PetG affects either the assembly or stability of the cytochrome bf complex in C. reinhardtii [].; GO: 0009512 cytochrome b6f complex; PDB: 1Q90_G 2ZT9_G 1VF5_G 2D2C_G 2E74_G 2E75_G 2E76_G.
Probab=25.67 E-value=85 Score=21.39 Aligned_cols=27 Identities=15% Similarity=0.182 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhchH
Q psy11615 52 KDYILGTLILIALTICWYVYRQKESSQ 78 (224)
Q Consensus 52 KDi~Lv~slviavgGcWfAy~Qnr~Sk 78 (224)
-.|++...-|..+|-...||.|-|+..
T Consensus 7 ~GiVlGli~vtl~Glfv~Ay~QY~Rg~ 33 (37)
T PF02529_consen 7 SGIVLGLIPVTLAGLFVAAYLQYRRGN 33 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCS--
T ss_pred hhHHHHhHHHHHHHHHHHHHHHHhccc
Confidence 356777777777777888999988754
No 296
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=25.66 E-value=2.9e+02 Score=20.74 Aligned_cols=20 Identities=35% Similarity=0.498 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHhhhh
Q psy11615 153 LKQEIELLRNELQRAEGELE 172 (224)
Q Consensus 153 l~eELe~vR~aL~~AE~eLe 172 (224)
|..||...+..|..|++.++
T Consensus 55 L~~el~~~~~~l~~a~~~~e 74 (75)
T PF07989_consen 55 LKRELQEKKKLLKEAEKAIE 74 (75)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 34566666666666666553
No 297
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=25.64 E-value=70 Score=30.81 Aligned_cols=22 Identities=18% Similarity=0.656 Sum_probs=18.6
Q ss_pred hHHHHHHHHH-HHHHHHHHHhhh
Q psy11615 51 VKDYILGTLI-LIALTICWYVYR 72 (224)
Q Consensus 51 wKDi~Lv~sl-viavgGcWfAy~ 72 (224)
|+.|...++. ++-++||||.+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~ 24 (495)
T TIGR01241 2 LLGFLFSLLPPILLLVGVWFFFR 24 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 7888888887 788899999776
No 298
>PF12297 EVC2_like: Ellis van Creveld protein 2 like protein; InterPro: IPR022076 This family of proteins is found in eukaryotes. Proteins in this family are typically between 571 and 1310 amino acids in length. There are two conserved sequence motifs: LPA and ELH. EVC2 is implicated in Ellis van Creveld chondrodysplastic dwarfism in humans. Mutations in this protein can give rise to this congenital condition. LIMBIN is a protein which shares around 80% sequence homology with EVC2 and it is implicated in a similar condition in bovine chondrodysplastic dwarfism.
Probab=25.48 E-value=89 Score=31.03 Aligned_cols=46 Identities=11% Similarity=0.145 Sum_probs=28.2
Q ss_pred cccchhhhhcccccc---cCCCCCCchhHHHH--HHHHHHHHHHHHHHhhh
Q psy11615 27 SLVGAFVSTHGKSID---DVDRNSTSHVKDYI--LGTLILIALTICWYVYR 72 (224)
Q Consensus 27 s~~gsf~~aH~~s~D---~VDRer~~~wKDi~--Lv~slviavgGcWfAy~ 72 (224)
+.+|+|.....-+.. .|-++++.+--.|. +++|||++..||+|.++
T Consensus 40 ~~~~~l~a~~t~~~~e~~~vlpNHGlhaagFfvaflvslVL~~l~~f~l~r 90 (429)
T PF12297_consen 40 SNSTQLKALFTITVEEKISVLPNHGLHAAGFFVAFLVSLVLTWLCFFLLAR 90 (429)
T ss_pred hcccchhhhheeeccccceeccCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555444443332 34466666666654 66788888889888653
No 299
>PRK10927 essential cell division protein FtsN; Provisional
Probab=25.45 E-value=34 Score=32.60 Aligned_cols=23 Identities=9% Similarity=0.232 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhc
Q psy11615 54 YILGTLILIALTICWYVYRQKES 76 (224)
Q Consensus 54 i~Lv~slviavgGcWfAy~Qnr~ 76 (224)
+.|++.||+.++|+.|++.+|+.
T Consensus 37 ~alAvavlv~fiGGLyFith~k~ 59 (319)
T PRK10927 37 VAIAAAVLVTFIGGLYFITHHKK 59 (319)
T ss_pred HHHHHHHHHHHhhheEEEecCCC
Confidence 44555444444444444455775
No 300
>PRK05585 yajC preprotein translocase subunit YajC; Validated
Probab=25.39 E-value=1.3e+02 Score=23.99 Aligned_cols=20 Identities=20% Similarity=0.687 Sum_probs=9.7
Q ss_pred HHhhh-hhhchHHHHHHHHHhh
Q psy11615 68 WYVYR-QKESSQQHLRRMMKDM 88 (224)
Q Consensus 68 WfAy~-Qnr~Sk~hl~~Mmkdl 88 (224)
||.++ |+|..+.| .+|.+.|
T Consensus 33 f~~~RpqkK~~k~~-~~~~~~L 53 (106)
T PRK05585 33 FLIIRPQQKRQKEH-KKMLSSL 53 (106)
T ss_pred HHhccHHHHHHHHH-HHHHHhc
Confidence 34444 55555544 5554443
No 301
>PRK15136 multidrug efflux system protein EmrA; Provisional
Probab=25.30 E-value=97 Score=29.05 Aligned_cols=26 Identities=12% Similarity=0.129 Sum_probs=12.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhh
Q psy11615 146 SDLEVCQLKQEIELLRNELQRAEGEL 171 (224)
Q Consensus 146 sd~Els~l~eELe~vR~aL~~AE~eL 171 (224)
+..++.+.+.+++..+.++..|+..+
T Consensus 156 S~~~ld~a~~~~~~a~a~l~~a~~~l 181 (390)
T PRK15136 156 GREELQHARDAVASAQAQLDVAIQQY 181 (390)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34344444445555555555555444
No 302
>PF03528 Rabaptin: Rabaptin; InterPro: IPR018514 Regeneration of injured axons at neuromuscular junctions has been assumed to be regulated by extra-cellular factors that promote neurite outgrowth. A novel neurite outgrowth factor from chick denervated skeletal muscle has been cloned and characterised. The protein, termed neurocrescin (rabaptin), has been shown to be secreted in an activity-dependent fashion [].Rabaptin is a 100kDa coiled-coil protein that interacts with the GTP form of the small GTPase Rab5, a potent regulator of endocytic transport []. It is mainly cytosolic, but a fraction co-localises with Rab5 to early endosomes. Rab5 recruits rabaptin-5 to purified early endosomes in a GTP-dependent manner, demonstrating functional similarities with other members of the Ras superfamily. Immunodepletion of rabaptin-5 from cytosol strongly inhibits Rab5-dependent early endosome fusion. Thus, rabaptin-5 is a Rab effector required for membrane docking and fusion.; GO: 0005096 GTPase activator activity, 0008083 growth factor activity; PDB: 1X79_C.
Probab=25.09 E-value=2.3e+02 Score=23.07 Aligned_cols=34 Identities=29% Similarity=0.510 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhcccccccc
Q psy11615 97 DLANLQKELERARQEQENAASEKIKLERRLQEHQALQGDASDLKS 141 (224)
Q Consensus 97 sl~dlQ~~Le~aqee~~~v~~EK~~LE~kl~~~~~ak~ea~rl~~ 141 (224)
+..+|+..|..+++. .|||..|++ ++.+++-||+
T Consensus 64 ev~~L~~~L~~~~~~--------e~LE~~M~k---aqe~~e~Lrs 97 (106)
T PF03528_consen 64 EVAKLQRRLREGQEL--------ENLEKSMKK---AQEDEEKLRS 97 (106)
T ss_dssp HHHHHHHHHHHHH----------HHHHHHHHH---HHHHHHHHHH
T ss_pred HHHHhcccccccchH--------HHHHHHHHH---HHhHHHHHHH
Confidence 366777788877732 366666665 5555554444
No 303
>PF15062 ARL6IP6: Haemopoietic lineage transmembrane helix
Probab=25.03 E-value=60 Score=25.65 Aligned_cols=27 Identities=15% Similarity=0.253 Sum_probs=19.2
Q ss_pred CCCchhHH----HHHHHHHHHHHHHHHHhhh
Q psy11615 46 NSTSHVKD----YILGTLILIALTICWYVYR 72 (224)
Q Consensus 46 er~~~wKD----i~Lv~slviavgGcWfAy~ 72 (224)
.-+..|-+ --++.+++.|+.-|||.|-
T Consensus 12 ~~~~~Ws~~~~~~~~~~~ll~Gllv~~Ft~~ 42 (85)
T PF15062_consen 12 SLLGFWSERHQVGSLLSSLLCGLLVCSFTWT 42 (85)
T ss_pred hheeeehhhhhhhHHHHHHHHHHHHHHhhhe
Confidence 34445554 2367888999999999873
No 304
>cd01324 cbb3_Oxidase_CcoQ Cytochrome cbb oxidase CcoQ. Cytochrome cbb3 oxidase, the terminal oxidase in the respiratory chains of proteobacteria, is a multi-chain transmembrane protein located in the cell membrane. Like other cytochrome oxidases, it catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. Found exclusively in proteobacteria, cbb3 is believed to be a modern enzyme that has evolved independently to perform a specialized function in microaerobic energy metabolism. The cbb3 operon contains four genes (ccoNOQP or fixNOQP), with ccoN coding for subunit I. Instead of a CuA-containing subunit II analogous to other cytochrome oxidases, cbb3 utilizes subunits ccoO and ccoP, which contain one and two hemes, respectively, to transfer electrons to the binuclear center. ccoQ, the fourth subunit, is a single transmembrane helix protein. It has been shown to protect the core complex from proteolytic degradation by serine proteases. See cd00919, cd01322
Probab=25.00 E-value=1.2e+02 Score=21.01 Aligned_cols=25 Identities=20% Similarity=0.274 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhch
Q psy11615 53 DYILGTLILIALTICWYVYRQKESS 77 (224)
Q Consensus 53 Di~Lv~slviavgGcWfAy~Qnr~S 77 (224)
-+.++..+++-+|.|||||.=+++.
T Consensus 13 ~~~l~~~~~~Figiv~wa~~p~~k~ 37 (48)
T cd01324 13 SWGLLYLALFFLGVVVWAFRPGRKK 37 (48)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCcch
Confidence 3455566688899999999855443
No 305
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=24.96 E-value=4.9e+02 Score=24.74 Aligned_cols=65 Identities=20% Similarity=0.269 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCh
Q psy11615 101 LQKELERARQEQENAASEKIKLERRLQEHQALQGDASDLKSSSAFSDLEVCQLKQEIELLRNELQRAEGELEDRCWAPPP 180 (224)
Q Consensus 101 lQ~~Le~aqee~~~v~~EK~~LE~kl~~~~~ak~ea~rl~~~r~~sd~Els~l~eELe~vR~aL~~AE~eLe~~~ws~P~ 180 (224)
|.++++..+........++.+..+++.+ .+.++..|+.-+...-..|+-|+-+|+.|.-.|.-
T Consensus 249 l~~Ri~et~~ak~~Le~ql~~~~~ei~~-----------------~e~~i~~L~~ai~~k~~~lkvaqTRL~~R~~RP~v 311 (384)
T PF03148_consen 249 LRKRIHETQEAKNELEWQLKKTLQEIAE-----------------MEKNIEDLEKAIRDKEGPLKVAQTRLENRTQRPNV 311 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHH-----------------HHHHHHHHHHHHHHHHhhHHHHHHHHhhHhcCCch
Q ss_pred hh
Q psy11615 181 GL 182 (224)
Q Consensus 181 ~L 182 (224)
.|
T Consensus 312 El 313 (384)
T PF03148_consen 312 EL 313 (384)
T ss_pred HH
No 306
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=24.76 E-value=4.1e+02 Score=22.08 Aligned_cols=40 Identities=15% Similarity=0.215 Sum_probs=25.8
Q ss_pred HHHHHHHh-----hHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q psy11615 80 HLRRMMKD-----MEGLQRAELDLANLQKELERARQEQENAASEK 119 (224)
Q Consensus 80 hl~~Mmkd-----le~Lq~AE~sl~dlQ~~Le~aqee~~~v~~EK 119 (224)
.|.+||.+ -++|..|+....+.++.+++++..-..+..|-
T Consensus 42 pi~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~L~~a~~ea 86 (175)
T PRK14472 42 PILSALEEREKGIQSSIDRAHSAKDEAEAILRKNRELLAKADAEA 86 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666655 35667777777777777777766655555543
No 307
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=24.67 E-value=7.1e+02 Score=24.81 Aligned_cols=159 Identities=14% Similarity=0.217 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhchHHHHHHHHHhhHhHHHHHHH---------------------------------HHH
Q psy11615 54 YILGTLILIALTICWYVYRQKESSQQHLRRMMKDMEGLQRAELD---------------------------------LAN 100 (224)
Q Consensus 54 i~Lv~slviavgGcWfAy~Qnr~Sk~hl~~Mmkdle~Lq~AE~s---------------------------------l~d 100 (224)
+.+++.|||.|++.-++|.-+|+....|..+-...+.|...=-. |-+
T Consensus 4 ~~ii~i~ii~i~~~~~~~~~rr~~~~~i~~Le~~k~~l~~~pv~~el~kvk~l~l~Ges~~~f~~w~~~~~~i~~~~~~~ 83 (569)
T PRK04778 4 YLIIAIVVIIIIAYLAGLILRKRNYKRIDELEERKQELENLPVNDELEKVKKLNLTGQSEEKFEEWRQKWDEIVTNSLPD 83 (569)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHhhhhh
Q ss_pred HHHHHHHHHHHhHHH-----HHHHHHHHHHHHHHhhhhcccccccccccchhHHHHHH-------HHHHHHHHHHHHHHH
Q psy11615 101 LQKELERARQEQENA-----ASEKIKLERRLQEHQALQGDASDLKSSSAFSDLEVCQL-------KQEIELLRNELQRAE 168 (224)
Q Consensus 101 lQ~~Le~aqee~~~v-----~~EK~~LE~kl~~~~~ak~ea~rl~~~r~~sd~Els~l-------~eELe~vR~aL~~AE 168 (224)
+...|..|.+....- ...=..++..|.. ....-..++. +|+.| ++++.+++...+...
T Consensus 84 ie~~l~~ae~~~~~~~f~~a~~~~~~~~~~l~~---~e~~~~~i~~-------~l~~l~~~e~~nr~~v~~l~~~y~~~r 153 (569)
T PRK04778 84 IEEQLFEAEELNDKFRFRKAKHEINEIESLLDL---IEEDIEQILE-------ELQELLESEEKNREEVEQLKDLYRELR 153 (569)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH---HHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhhhcCCCCChhhHHHHhhHHHHHHHHHHHhHhhHHHHHHHHHHHHHhhcccc
Q psy11615 169 GELEDRCWAPPPGLQHWLQLTHEIENKAYVKKKLMAEKQLQQAREARFDRGKCI 222 (224)
Q Consensus 169 ~eLe~~~ws~P~~LQ~wLQlT~EvE~q~y~~Kk~~AekQL~~AkE~~EKikK~~ 222 (224)
+.+-+++.+=-+++...=..=-++|-.+=.-......---..|++-.++|+..+
T Consensus 154 k~ll~~~~~~G~a~~~le~~l~~~e~~f~~f~~l~~~Gd~~~A~e~l~~l~~~~ 207 (569)
T PRK04778 154 KSLLANRFSFGPALDELEKQLENLEEEFSQFVELTESGDYVEAREILDQLEEEL 207 (569)
T ss_pred HHHHhcCccccchHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
No 308
>PF12597 DUF3767: Protein of unknown function (DUF3767); InterPro: IPR022533 This group of proteins includes mitochodrial cytochrome c oxidase proteins [], and some transmembrane domain-containing proteins of unknown function known as FAM36A. Proteins in this family are typically between 112 and 199 amino acids in length.
Probab=24.57 E-value=2.4e+02 Score=22.90 Aligned_cols=40 Identities=18% Similarity=0.361 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhchHHHHHHHHHhhHhH
Q psy11615 52 KDYILGTLILIALTICWYVYRQKESSQQHLRRMMKDMEGL 91 (224)
Q Consensus 52 KDi~Lv~slviavgGcWfAy~Qnr~Sk~hl~~Mmkdle~L 91 (224)
-|+-....+++++++-+|--.+++.++..|++++.-|...
T Consensus 69 ~nwavgsF~l~s~~~we~Cr~~r~~~~~~~~~~~e~~~~k 108 (118)
T PF12597_consen 69 ANWAVGSFFLGSLGSWEYCRYNRRKERQQMKRAVEAMQEK 108 (118)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666667776666666666667777777776655544
No 309
>PF05269 Phage_CII: Bacteriophage CII protein; InterPro: IPR007933 The CII protein is a transcription activator, conserved in bacteriophage lambda and related phages, that plays a key role in the decision between lytic or lysogenic phage development. CII is regulated at multiple levels including transcription, translation initiation, mRNA stability, and proteolysis []. Conditions that stabilise cII favour lysogenic development. The lambda CII protein activates three specific promoters, binding to direct repeat sequences rather than the more usual inverted repeats. Structurally, CII is a homotetramer where each monomer is composed of four alpha helices and a disordered C terminus [, ]. The alpha helical region is responsible for DNA binding and multimerisation. The homotetramer has an unusual spatial arrangement that allows recognition of the direct repeat sequences.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1ZS4_C 1ZPQ_C 1XWR_A.
Probab=24.46 E-value=60 Score=25.63 Aligned_cols=25 Identities=32% Similarity=0.380 Sum_probs=18.8
Q ss_pred cCCCCCCchhH-HHHHHHHHHHHHHH
Q psy11615 42 DVDRNSTSHVK-DYILGTLILIALTI 66 (224)
Q Consensus 42 ~VDRer~~~wK-Di~Lv~slviavgG 66 (224)
-||.+..+||| |+..-++.++++.|
T Consensus 34 Gv~eStISR~k~~~~~~~a~lLa~L~ 59 (91)
T PF05269_consen 34 GVDESTISRWKNDFIEKMAMLLAALE 59 (91)
T ss_dssp TSSTTTHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHhhHHHHHHHHHHHHH
Confidence 57889999999 66666777766544
No 310
>PRK04098 sec-independent translocase; Provisional
Probab=24.40 E-value=4.5e+02 Score=22.78 Aligned_cols=29 Identities=10% Similarity=0.375 Sum_probs=13.7
Q ss_pred HHHHHHhhHhHHHHHHHHHHHHHHHHHHH
Q psy11615 81 LRRMMKDMEGLQRAELDLANLQKELERAR 109 (224)
Q Consensus 81 l~~Mmkdle~Lq~AE~sl~dlQ~~Le~aq 109 (224)
+++++.|..+==..|..+.++++.+.+.+
T Consensus 39 ~K~~~~~~k~~l~~Ei~~~elk~e~~k~k 67 (158)
T PRK04098 39 VKKTINDAKSTLDKEINIEEIKEEALKYK 67 (158)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 44445444433333444555555555443
No 311
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=24.39 E-value=5.9e+02 Score=23.83 Aligned_cols=26 Identities=12% Similarity=0.031 Sum_probs=15.0
Q ss_pred HHHHHHhHhhHHHHHHHHHHHHHhhc
Q psy11615 194 NKAYVKKKLMAEKQLQQAREARFDRG 219 (224)
Q Consensus 194 ~q~y~~Kk~~AekQL~~AkE~~EKik 219 (224)
+.--+.+++....++..|.--.+..|
T Consensus 241 I~~~~~~k~e~~~~I~~ae~~~~~~r 266 (312)
T smart00787 241 IEDLTNKKSELNTEIAEAEKKLEQCR 266 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 33455666666666666655544443
No 312
>KOG3433|consensus
Probab=24.36 E-value=2.4e+02 Score=25.48 Aligned_cols=14 Identities=7% Similarity=0.083 Sum_probs=7.2
Q ss_pred HHHHHHHHhhHhHH
Q psy11615 79 QHLRRMMKDMEGLQ 92 (224)
Q Consensus 79 ~hl~~Mmkdle~Lq 92 (224)
.-+..++++|+...
T Consensus 81 s~~qeLe~~L~~~~ 94 (203)
T KOG3433|consen 81 SVLQELESQLATGS 94 (203)
T ss_pred HHHHHHHHHHHHhh
Confidence 33455666655553
No 313
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=24.28 E-value=5e+02 Score=22.93 Aligned_cols=74 Identities=20% Similarity=0.325 Sum_probs=0.0
Q ss_pred hchHHHHHHHHHhh------HhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhcccccccccccchhH
Q psy11615 75 ESSQQHLRRMMKDM------EGLQRAELDLANLQKELERARQEQENAASEKIKLERRLQEHQALQGDASDLKSSSAFSDL 148 (224)
Q Consensus 75 r~Sk~hl~~Mmkdl------e~Lq~AE~sl~dlQ~~Le~aqee~~~v~~EK~~LE~kl~~~~~ak~ea~rl~~~r~~sd~ 148 (224)
.....-+.+||++| ...+-|+..+...+.=|.+.+..-.....+-..|-..+++
T Consensus 126 ~~~l~ea~~mL~emr~r~f~~~~~~Ae~El~~A~~LL~~v~~~~~~~~~~~~~l~~~i~~-------------------- 185 (264)
T PF06008_consen 126 QRALAEAQRMLEEMRKRDFTPQRQNAEDELKEAEDLLSRVQKWFQKPQQENESLAEAIRD-------------------- 185 (264)
T ss_pred HHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhHHHHHHHHH--------------------
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy11615 149 EVCQLKQEIELLRNELQRAE 168 (224)
Q Consensus 149 Els~l~eELe~vR~aL~~AE 168 (224)
-|++....|..+|..|.+|.
T Consensus 186 ~L~~~~~kL~Dl~~~l~eA~ 205 (264)
T PF06008_consen 186 DLNDYNAKLQDLRDLLNEAQ 205 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHH
No 314
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=24.28 E-value=3.9e+02 Score=21.71 Aligned_cols=32 Identities=13% Similarity=0.174 Sum_probs=16.4
Q ss_pred HHHHHHHhhHhH-HHHHHHHHHHHHHHHHHHHH
Q psy11615 80 HLRRMMKDMEGL-QRAELDLANLQKELERARQE 111 (224)
Q Consensus 80 hl~~Mmkdle~L-q~AE~sl~dlQ~~Le~aqee 111 (224)
.|...+.+-+.+ ..|+....+.++.|..|+.+
T Consensus 42 ~I~~~l~~A~~~~~ea~~~~~e~e~~l~~Ar~e 74 (141)
T PRK08476 42 SIKNDLEKVKTNSSDVSEIEHEIETILKNAREE 74 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344544444444 34444555555555555554
No 315
>PRK05696 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=24.10 E-value=68 Score=26.89 Aligned_cols=12 Identities=8% Similarity=0.368 Sum_probs=7.4
Q ss_pred HHHHHHHhhhhh
Q psy11615 63 ALTICWYVYRQK 74 (224)
Q Consensus 63 avgGcWfAy~Qn 74 (224)
|.||.||....+
T Consensus 34 ~g~~~~f~l~~~ 45 (170)
T PRK05696 34 GGGAAWFFMGSS 45 (170)
T ss_pred HHHHHHhhhcCC
Confidence 346788876543
No 316
>PF08883 DOPA_dioxygen: Dopa 4,5-dioxygenase family; InterPro: IPR014980 This family of proteins is related to P87064 from SWISSPROT a DOPA 4,5-dioxygenase that is involved in synthesis of betalain. DOPA-dioxygenase is the key enzyme involved in betalain biosynthesis. It converts 3,4-dihydroxyphenylalanine to betalamic acid, a yellow chromophore. ; PDB: 2NYH_A 2P8I_C.
Probab=24.02 E-value=49 Score=26.62 Aligned_cols=31 Identities=32% Similarity=0.440 Sum_probs=23.7
Q ss_pred chhchHHHHHHHHHHHHHHhcccc--cccchhhh
Q psy11615 3 VYFMAEKQLQQAREACEKLRKKRS--SLVGAFVS 34 (224)
Q Consensus 3 ~~~~a~~ql~~a~e~~eki~kKr~--s~~gsf~~ 34 (224)
||++ +.+...|..-||+|.+..+ .-+|.|+-
T Consensus 5 vYfd-~~~~~~A~~Lre~i~~~f~~~~~~g~~~~ 37 (104)
T PF08883_consen 5 VYFD-AAEREFARALRERIREEFPDELRVGRFHE 37 (104)
T ss_dssp EEE--GGGHHHHHHHHHHHHHHTTTTSEE---BS
T ss_pred EEcC-HHHHHHHHHHHHHHHHHhhcceeEeeccc
Confidence 7896 8899999999999999999 66776654
No 317
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=24.01 E-value=26 Score=36.76 Aligned_cols=58 Identities=34% Similarity=0.448 Sum_probs=0.0
Q ss_pred hhhhhchHHHHHHHHHhhHhHHHH-----------HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy11615 71 YRQKESSQQHLRRMMKDMEGLQRA-----------ELDLANLQKELERARQEQENAASEKIKLERRLQE 128 (224)
Q Consensus 71 y~Qnr~Sk~hl~~Mmkdle~Lq~A-----------E~sl~dlQ~~Le~aqee~~~v~~EK~~LE~kl~~ 128 (224)
..+.+.-+.+|+-|..+++.-+++ |.-+..|+.+|+.++.....+..-+..+|.++.+
T Consensus 573 ~k~~kk~q~qlkdlq~~lee~~~~~~~~~~~~~~~e~r~~~l~~elee~~~~~~~a~r~rk~aE~el~e 641 (859)
T PF01576_consen 573 QKQLKKLQAQLKDLQRELEEAQRAREELREQLAVSERRLRALQAELEELREALEQAERARKQAESELDE 641 (859)
T ss_dssp ---------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566666666666655433 3335567778888888887777788888877776
No 318
>CHL00176 ftsH cell division protein; Validated
Probab=23.95 E-value=1.2e+02 Score=30.90 Aligned_cols=66 Identities=17% Similarity=0.391 Sum_probs=36.1
Q ss_pred ccCCCCCCchhHHHHHHHH-HHHHHHHHHHhhhhhhc--------------hHHHHHH------HHHhhHhHHHHHHHHH
Q psy11615 41 DDVDRNSTSHVKDYILGTL-ILIALTICWYVYRQKES--------------SQQHLRR------MMKDMEGLQRAELDLA 99 (224)
Q Consensus 41 D~VDRer~~~wKDi~Lv~s-lviavgGcWfAy~Qnr~--------------Sk~hl~~------Mmkdle~Lq~AE~sl~ 99 (224)
+..|.+..+.|.++...++ -++.++|.||.+..... |+.++.. -..|+-++..+...+.
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~dv~G~~~~k~~l~ 196 (638)
T CHL00176 117 DAHPPVLKSNIVTILSNLLLPLILIGVLWFFFQRSSNFKGGPGQNLMNFGKSKARFQMEADTGITFRDIAGIEEAKEEFE 196 (638)
T ss_pred EecCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccchhHHHhhcccCCCCCHHhccChHHHHHHHH
Confidence 3344455577888776655 36667788877644311 1112211 2255666766666666
Q ss_pred HHHHHHH
Q psy11615 100 NLQKELE 106 (224)
Q Consensus 100 dlQ~~Le 106 (224)
++-.-|.
T Consensus 197 eiv~~lk 203 (638)
T CHL00176 197 EVVSFLK 203 (638)
T ss_pred HHHHHHh
Confidence 6654443
No 319
>COG4726 PilX Tfp pilus assembly protein PilX [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=23.89 E-value=2.6e+02 Score=25.11 Aligned_cols=49 Identities=24% Similarity=0.274 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHhhhhhhchHHHHHHHHHhhHhHHHHHHHHHHHHHHHHH
Q psy11615 55 ILGTLILIALTICWYVYRQKESSQQHLRRMMKDMEGLQRAELDLANLQKELER 107 (224)
Q Consensus 55 ~Lv~slviavgGcWfAy~Qnr~Sk~hl~~Mmkdle~Lq~AE~sl~dlQ~~Le~ 107 (224)
+|+++-++|++|.=-+.-|.|-|-..+.+-+ ..|.||.+|.|=...+..
T Consensus 23 ~LvvltLl~l~~~r~~llqeRiSaN~~D~~l----AfqaAEaaLr~~E~~i~n 71 (196)
T COG4726 23 VLVVLTLLGLAAARSVLLQERISANERDRSL----AFQAAEAALREGELQINN 71 (196)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH----HHHHHHHHHHHHHHHHhc
Confidence 3444445566666677778777766665543 358888888876555544
No 320
>KOG1029|consensus
Probab=23.80 E-value=3.7e+02 Score=29.43 Aligned_cols=45 Identities=22% Similarity=0.159 Sum_probs=31.9
Q ss_pred CCCCChhhHHHHhhHHHHHHHHHHHhHhhHHHHHHHHHHHHHhhcc
Q psy11615 175 CWAPPPGLQHWLQLTHEIENKAYVKKKLMAEKQLQQAREARFDRGK 220 (224)
Q Consensus 175 ~ws~P~~LQ~wLQlT~EvE~q~y~~Kk~~AekQL~~AkE~~EKikK 220 (224)
.|..-..|+.=|+.-.|+|.+.-.-.|..-| .+..||+..||.|+
T Consensus 366 Erk~qlElekqLerQReiE~qrEEerkkeie-~rEaar~ElEkqRq 410 (1118)
T KOG1029|consen 366 ERKAQLELEKQLERQREIERQREEERKKEIE-RREAAREELEKQRQ 410 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 4444556777788888999888776665544 35678888888765
No 321
>TIGR03521 GldG gliding-associated putative ABC transporter substrate-binding component GldG. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldG is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldG abolish the gliding phenotype. GldG, along with GldA and GldF are believed to compose an ABC transporter and are observed as an operon. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=23.69 E-value=67 Score=31.80 Aligned_cols=22 Identities=18% Similarity=0.329 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHhhhhhhc
Q psy11615 55 ILGTLILIALTICWYVYRQKES 76 (224)
Q Consensus 55 ~Lv~slviavgGcWfAy~Qnr~ 76 (224)
.+..++++++|++|+..+.+|+
T Consensus 530 ~~pp~~~l~~G~~~~~~Rrr~~ 551 (552)
T TIGR03521 530 GLPILLLLLFGLSFTYIRKRKY 551 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHhhc
Confidence 3344677888999998887775
No 322
>PF11176 DUF2962: Protein of unknown function (DUF2962); InterPro: IPR021346 This eukaryotic family of proteins has no known function. ; PDB: 2KKM_A.
Probab=23.56 E-value=1.9e+02 Score=24.32 Aligned_cols=36 Identities=31% Similarity=0.454 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHhhhhhcCCCCChhhHHHHhhHHHHHHHHHH
Q psy11615 154 KQEIELLRNELQRAEGELEDRCWAPPPGLQHWLQLTHEIENKAYV 198 (224)
Q Consensus 154 ~eELe~vR~aL~~AE~eLe~~~ws~P~~LQ~wLQlT~EvE~q~y~ 198 (224)
.+||++++.+ .|-..||.+-+.-|..|-+.|.+-|+
T Consensus 83 DeEleql~~~---------rR~gRp~s~re~~L~~~~~~E~~ey~ 118 (155)
T PF11176_consen 83 DEELEQLKKE---------RRKGRPPSNREDLLEQKIEREEEEYK 118 (155)
T ss_dssp HHHHHHHHHH---------GGGT---TTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh---------hcCCCCCchHHHHHHHHHHHHHHHHh
Confidence 5889888776 35688999999999999999999987
No 323
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=23.34 E-value=5.2e+02 Score=22.79 Aligned_cols=40 Identities=13% Similarity=0.158 Sum_probs=24.2
Q ss_pred HHHHHHh-----hHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q psy11615 81 LRRMMKD-----MEGLQRAELDLANLQKELERARQEQENAASEKI 120 (224)
Q Consensus 81 l~~Mmkd-----le~Lq~AE~sl~dlQ~~Le~aqee~~~v~~EK~ 120 (224)
|..+|.. -++|..||....+.+..++.++.....+..|..
T Consensus 30 i~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~ 74 (246)
T TIGR03321 30 ILDAMDAREKKIAGELADADTKKREAEQERREYEEKNEELDQQRE 74 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555544 345677777777777777766665555544433
No 324
>PF10721 DUF2514: Protein of unknown function (DUF2514); InterPro: IPR019659 This protein family is conserved in bacteria and some viruses. The function is not known.
Probab=23.23 E-value=4.7e+02 Score=22.25 Aligned_cols=16 Identities=19% Similarity=0.241 Sum_probs=10.5
Q ss_pred chhHHHHHHHHHHHHH
Q psy11615 145 FSDLEVCQLKQEIELL 160 (224)
Q Consensus 145 ~sd~Els~l~eELe~v 160 (224)
+++-...+|.+++..+
T Consensus 83 ~A~aa~~rLr~~~~~l 98 (162)
T PF10721_consen 83 AARAAADRLRQQLAKL 98 (162)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444666777777777
No 325
>PF11172 DUF2959: Protein of unknown function (DUF2959); InterPro: IPR021342 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=23.17 E-value=5.6e+02 Score=23.12 Aligned_cols=70 Identities=17% Similarity=0.207 Sum_probs=43.0
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCChhhHH----HHhhHHHHHHHH----------HHHhHhhHHHH
Q psy11615 142 SSAFSDLEVCQLKQEIELLRNELQRAEGELEDRCWAPPPGLQH----WLQLTHEIENKA----------YVKKKLMAEKQ 207 (224)
Q Consensus 142 ~r~~sd~Els~l~eELe~vR~aL~~AE~eLe~~~ws~P~~LQ~----wLQlT~EvE~q~----------y~~Kk~~AekQ 207 (224)
+|..|...+...+....++..++++||..++ |.|.. =|-|-|.+=-+. ...-=....+.
T Consensus 113 LR~~S~~kL~~tr~~Y~~L~~aM~~Ae~km~-------PVL~~~~D~vL~LKHNLNA~AI~sL~~e~~~~~~di~~Li~~ 185 (201)
T PF11172_consen 113 LRRASEQKLAETRRRYAQLIKAMRRAESKMQ-------PVLAAFRDQVLYLKHNLNAQAIASLQGEFSSIESDISQLIKE 185 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-------hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666777777778888889999999998553 44543 355556543322 22222344566
Q ss_pred HHHHHHHHHhh
Q psy11615 208 LQQAREARFDR 218 (224)
Q Consensus 208 L~~AkE~~EKi 218 (224)
|..++..++..
T Consensus 186 m~~sI~ead~F 196 (201)
T PF11172_consen 186 MERSIAEADAF 196 (201)
T ss_pred HHHHHHHHHHH
Confidence 66666666553
No 326
>PF13703 PepSY_TM_2: PepSY-associated TM helix
Probab=22.95 E-value=83 Score=23.39 Aligned_cols=19 Identities=32% Similarity=0.574 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q psy11615 54 YILGTLILIALTICWYVYR 72 (224)
Q Consensus 54 i~Lv~slviavgGcWfAy~ 72 (224)
+.++..+++|+.|.+|+|.
T Consensus 70 ~~~~~ll~~a~TG~~~~~~ 88 (88)
T PF13703_consen 70 WFLPFLLVIALTGLFFSFP 88 (88)
T ss_pred HHHHHHHHHHHHHHHHhCc
Confidence 3567788999999999873
No 327
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=22.74 E-value=1e+03 Score=26.06 Aligned_cols=35 Identities=29% Similarity=0.379 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy11615 93 RAELDLANLQKELERARQEQENAASEKIKLERRLQ 127 (224)
Q Consensus 93 ~AE~sl~dlQ~~Le~aqee~~~v~~EK~~LE~kl~ 127 (224)
.+|..|...+++++.+..+......+-.+.+.+++
T Consensus 625 ~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 659 (1201)
T PF12128_consen 625 ELEKQLKQINKKIEELKREITQAEQELKQAEQDLQ 659 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 34444555555555555555555555444444443
No 328
>PF11346 DUF3149: Protein of unknown function (DUF3149); InterPro: IPR021494 This bacterial family of proteins has no known function.
Probab=22.65 E-value=1.2e+02 Score=20.81 Aligned_cols=8 Identities=38% Similarity=0.787 Sum_probs=3.6
Q ss_pred HHHHHHHh
Q psy11615 80 HLRRMMKD 87 (224)
Q Consensus 80 hl~~Mmkd 87 (224)
++.+|++|
T Consensus 33 F~~k~~~~ 40 (42)
T PF11346_consen 33 FIRKMKED 40 (42)
T ss_pred HHHHHccc
Confidence 44444443
No 329
>KOG2792|consensus
Probab=22.57 E-value=1e+02 Score=28.99 Aligned_cols=31 Identities=6% Similarity=0.026 Sum_probs=25.8
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHhhhhhh
Q psy11615 45 RNSTSHVKDYILGTLILIALTICWYVYRQKE 75 (224)
Q Consensus 45 Rer~~~wKDi~Lv~slviavgGcWfAy~Qnr 75 (224)
++....|+-+..++.|..|+||.|++..+.|
T Consensus 68 r~gp~~w~~~~~t~Alg~~~~g~~~Y~~~~k 98 (280)
T KOG2792|consen 68 RPGPFSWRSLLATFALGLGLGGALAYLKKEK 98 (280)
T ss_pred CCCcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678899999999999999999888765543
No 330
>PRK09731 putative general secretion pathway protein YghD; Provisional
Probab=22.53 E-value=5.3e+02 Score=22.56 Aligned_cols=26 Identities=15% Similarity=0.201 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhch
Q psy11615 52 KDYILGTLILIALTICWYVYRQKESS 77 (224)
Q Consensus 52 KDi~Lv~slviavgGcWfAy~Qnr~S 77 (224)
+.+++++.+|+.|+.+||...|-=+.
T Consensus 37 q~ll~~~g~vL~l~i~Y~~iWqPl~~ 62 (178)
T PRK09731 37 KGMLLAAVVFLFSVGYYVLIWQPLSE 62 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 77899999999999999999987544
No 331
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=22.51 E-value=3.3e+02 Score=26.30 Aligned_cols=32 Identities=28% Similarity=0.400 Sum_probs=23.4
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q psy11615 87 DMEGLQRAELDLANLQKELERARQEQENAASE 118 (224)
Q Consensus 87 dle~Lq~AE~sl~dlQ~~Le~aqee~~~v~~E 118 (224)
|++.+-........++.+++..+.++..+..+
T Consensus 26 ~vd~i~~ld~~~r~l~~~~~~lr~~rn~~sk~ 57 (425)
T PRK05431 26 DVDELLELDEERRELQTELEELQAERNALSKE 57 (425)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777777777888888888877766655544
No 332
>PF12963 DUF3852: Protein of unknown function (DUF3852); InterPro: IPR024330 This entry represents a family of uncharacterised bacterial proteins found by clustering human gut metagenomic sequences [].
Probab=22.43 E-value=95 Score=25.62 Aligned_cols=23 Identities=26% Similarity=0.661 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhh
Q psy11615 52 KDYILGTLILIALTICWYVYRQK 74 (224)
Q Consensus 52 KDi~Lv~slviavgGcWfAy~Qn 74 (224)
=|++|++++..=+|-+||.|+-|
T Consensus 58 idlILav~ffvKl~~ayfdYrKh 80 (111)
T PF12963_consen 58 IDLILAVFFFVKLGMAYFDYRKH 80 (111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 48899999999999999999854
No 333
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=22.22 E-value=3.7e+02 Score=20.70 Aligned_cols=9 Identities=33% Similarity=0.482 Sum_probs=3.5
Q ss_pred HHHHHHHHH
Q psy11615 153 LKQEIELLR 161 (224)
Q Consensus 153 l~eELe~vR 161 (224)
|.++|.+..
T Consensus 51 La~eLD~~~ 59 (89)
T PF13747_consen 51 LAQELDQAE 59 (89)
T ss_pred HHHHHHhHH
Confidence 334444333
No 334
>PF11466 Doppel: Prion-like protein Doppel; InterPro: IPR021566 Dpl is a homologue related to the prion protein (PrP). Dpl is toxic to neurons and is expressed in the brains of mice that do not express PrP. In DHPC and SDS micelles, Dpl shoes about 40% alpha-helical structure however in aqueous solution it consists of a random coil. The alpha helical segment can adopt a transmembrane localisation also in a membrane. The unprocessed Dpl protein is thought to posses a possible channel formation mechanism which may be related to toxicity through direct interaction with cell membranes and damage to the cell membrane. ; PDB: 1Z65_A.
Probab=22.03 E-value=31 Score=22.53 Aligned_cols=9 Identities=22% Similarity=0.335 Sum_probs=6.0
Q ss_pred HHHHHHhhh
Q psy11615 64 LTICWYVYR 72 (224)
Q Consensus 64 vgGcWfAy~ 72 (224)
+||||.|..
T Consensus 5 Lg~~~lAi~ 13 (30)
T PF11466_consen 5 LGGWWLAIV 13 (30)
T ss_dssp -SSHHHHHH
T ss_pred hhhHHHHHH
Confidence 578888753
No 335
>PF03814 KdpA: Potassium-transporting ATPase A subunit; InterPro: IPR004623 Kdp is a high affinity ATP-driven K+ transport system in Escherichia coli. It is composed of three membrane-bound subunits, KdpA, KdpB and KdpC and one small peptide, KdpF. KdpA is the K+-transporting subunit of this complex. During assembly of the complex, KdpA and KdpC bind to each other. This interaction is thought to stabilise the complex. Data indicates that KdpC might connect the KdpA, the K+-transporting subunit, to KdpB, the ATP-hydrolysing (energy providing) subunit [].; GO: 0008556 potassium-transporting ATPase activity, 0006813 potassium ion transport, 0005886 plasma membrane
Probab=22.02 E-value=1.8e+02 Score=29.90 Aligned_cols=36 Identities=17% Similarity=0.025 Sum_probs=28.7
Q ss_pred CCCchhHHHHHHH-------HHHHHHHHHHHhhhhhhchHHHH
Q psy11615 46 NSTSHVKDYILGT-------LILIALTICWYVYRQKESSQQHL 81 (224)
Q Consensus 46 er~~~wKDi~Lv~-------slviavgGcWfAy~Qnr~Sk~hl 81 (224)
.-.|+|.|+.+++ |+|+|+.-.|-...||=....++
T Consensus 158 ~iGNFwvDl~R~~l~vLLPlS~v~AliLv~qGVpQtf~~~~~v 200 (552)
T PF03814_consen 158 TIGNFWVDLVRSTLRVLLPLSFVFALILVSQGVPQTFSGYVTV 200 (552)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccCCcee
Confidence 3469999998876 78888888899999987766554
No 336
>PF13706 PepSY_TM_3: PepSY-associated TM helix
Probab=21.98 E-value=1.1e+02 Score=19.83 Aligned_cols=25 Identities=36% Similarity=0.390 Sum_probs=18.3
Q ss_pred CchhHHHHHH-HHHHHHHHHHHHhhh
Q psy11615 48 TSHVKDYILG-TLILIALTICWYVYR 72 (224)
Q Consensus 48 ~~~wKDi~Lv-~slviavgGcWfAy~ 72 (224)
.|+|=.+... +++++++.|+++.|.
T Consensus 7 ~H~W~Gl~~g~~l~~~~~tG~~~~f~ 32 (37)
T PF13706_consen 7 LHRWLGLILGLLLFVIFLTGAVMVFR 32 (37)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 4677776665 456788999999883
No 337
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=21.96 E-value=6.6e+02 Score=23.51 Aligned_cols=54 Identities=9% Similarity=0.057 Sum_probs=28.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHhhhhhhchHHHHHHHHHhhHhHHHHHHHHHHHHHHHHH
Q psy11615 49 SHVKDYILGTLILIALTICWYVYRQKESSQQHLRRMMKDMEGLQRAELDLANLQKELER 107 (224)
Q Consensus 49 ~~wKDi~Lv~slviavgGcWfAy~Qnr~Sk~hl~~Mmkdle~Lq~AE~sl~dlQ~~Le~ 107 (224)
.-..||.=-+.+++.-.|- .+..++. |+...=-.|.++...|.++.....+-.+
T Consensus 96 ddl~DIsDklgvLl~e~ge----~e~~~a~-~~d~yR~~LK~IR~~E~sl~p~R~~r~~ 149 (271)
T PF13805_consen 96 DDLSDISDKLGVLLYEIGE----LEDQYAD-RLDQYRIHLKSIRNREESLQPSRDRRRK 149 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHH----HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHH----HHHHHHH-HHHHHHHHHHHHHHHHHHHhHHHHHhHH
Confidence 3455665555555554443 2233332 3455555566666677776665555444
No 338
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=21.96 E-value=3.8e+02 Score=20.66 Aligned_cols=16 Identities=44% Similarity=0.603 Sum_probs=9.0
Q ss_pred HHHH-HHHHHHHHHHHH
Q psy11615 149 EVCQ-LKQEIELLRNEL 164 (224)
Q Consensus 149 Els~-l~eELe~vR~aL 164 (224)
||++ |..=++.+|+-|
T Consensus 71 Evs~rL~~a~e~Ir~vL 87 (89)
T PF13747_consen 71 EVSRRLDSAIETIRAVL 87 (89)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 4444 556666666654
No 339
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=21.93 E-value=5.2e+02 Score=22.28 Aligned_cols=69 Identities=17% Similarity=0.234 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHHHHHHHHH
Q psy11615 95 ELDLANLQKELERARQEQENAASEKIKLERRLQEHQALQGDASDLKSSSAFSDLEVCQLKQEIELLRNELQ 165 (224)
Q Consensus 95 E~sl~dlQ~~Le~aqee~~~v~~EK~~LE~kl~~~~~ak~ea~rl~~~r~~sd~Els~l~eELe~vR~aL~ 165 (224)
++...+++.++.....+......+...|+.+.... .+..++........-..|+..|+..-.+++..|.
T Consensus 119 e~~~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~--ek~~~e~~~~~~k~~~~ei~~lk~~~~ql~~~l~ 187 (189)
T PF10211_consen 119 EQGKQELEEEIEELEEEKEELEKQVQELKNKCEQL--EKREEELRQEEEKKHQEEIDFLKKQNQQLKAQLE 187 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445555555555555555555555554444331 0111111111111123366666666666666554
No 340
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=21.93 E-value=5.4e+02 Score=22.48 Aligned_cols=35 Identities=23% Similarity=0.368 Sum_probs=20.0
Q ss_pred HHHHHHhhHhH-HHHHHHHHHHHHHHHHHHHHhHHH
Q psy11615 81 LRRMMKDMEGL-QRAELDLANLQKELERARQEQENA 115 (224)
Q Consensus 81 l~~Mmkdle~L-q~AE~sl~dlQ~~Le~aqee~~~v 115 (224)
|...+.+-+.+ ..|+..+.+.++.|.+|+.+-+..
T Consensus 89 I~~~L~~Ae~~k~eAe~~~~~ye~~L~~Ar~eA~~I 124 (204)
T PRK09174 89 IAQDLDQAARLKQEADAAVAAYEQELAQARAKAHSI 124 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444 556666666666777666654443
No 341
>PF08912 Rho_Binding: Rho Binding; InterPro: IPR015008 Rho is responsible for the recognition and binding of Rho binding domain-containing proteins (such as ROCK) to Rho, resulting in activation of the GTPase which in turn modulates the phosphorylation of various signalling proteins. This domain is within an amphipathic alpha-helical coiled-coil and interacts with Rho through predominantly hydrophobic interactions []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0000910 cytokinesis, 0006468 protein phosphorylation; PDB: 1UIX_A 1S1C_X.
Probab=21.91 E-value=3.6e+02 Score=20.48 Aligned_cols=32 Identities=25% Similarity=0.451 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy11615 98 LANLQKELERARQEQENAASEKIKLERRLQEH 129 (224)
Q Consensus 98 l~dlQ~~Le~aqee~~~v~~EK~~LE~kl~~~ 129 (224)
|...|++++...++...+..-|..+|+.|..|
T Consensus 19 lk~~qeel~~~k~~~~~~~~ik~~~eK~L~~E 50 (69)
T PF08912_consen 19 LKKQQEELQKLKEEEQEIEEIKAQYEKQLNTE 50 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHHHHHHHCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55667777777777766666667777776664
No 342
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=21.88 E-value=3e+02 Score=19.59 Aligned_cols=29 Identities=31% Similarity=0.525 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy11615 100 NLQKELERARQEQENAASEKIKLERRLQE 128 (224)
Q Consensus 100 dlQ~~Le~aqee~~~v~~EK~~LE~kl~~ 128 (224)
|+.+++++.+.+...+..+...++.+|-+
T Consensus 1 D~~~E~~rL~Kel~kl~~~i~~~~~kL~n 29 (66)
T PF10458_consen 1 DVEAEIERLEKELEKLEKEIERLEKKLSN 29 (66)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 34445555555555555566666666655
No 343
>PF13974 YebO: YebO-like protein
Probab=21.87 E-value=49 Score=25.78 Aligned_cols=22 Identities=14% Similarity=-0.005 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHhhhhhhchH
Q psy11615 57 GTLILIALTICWYVYRQKESSQ 78 (224)
Q Consensus 57 v~slviavgGcWfAy~Qnr~Sk 78 (224)
++|+++++.|.+..|--||.|-
T Consensus 2 ~~~~~~~lv~livWFFVnRaSv 23 (80)
T PF13974_consen 2 VVSVLVLLVGLIVWFFVNRASV 23 (80)
T ss_pred eehHHHHHHHHHHHHHHHHHHH
Confidence 4666777777666666677774
No 344
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=21.84 E-value=4.7e+02 Score=21.70 Aligned_cols=41 Identities=20% Similarity=0.267 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhcccccccc
Q psy11615 101 LQKELERARQEQENAASEKIKLERRLQEHQALQGDASDLKS 141 (224)
Q Consensus 101 lQ~~Le~aqee~~~v~~EK~~LE~kl~~~~~ak~ea~rl~~ 141 (224)
+=.++...+..-..+..+|+++|..|++...+-.|-+.|.+
T Consensus 11 ~l~q~QqLq~ql~~~~~qk~~le~qL~E~~~al~Ele~l~e 51 (119)
T COG1382 11 QLAQLQQLQQQLQKVILQKQQLEAQLKEIEKALEELEKLDE 51 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 33456666777778999999999999985556666555554
No 345
>KOG0977|consensus
Probab=21.77 E-value=8.6e+02 Score=25.04 Aligned_cols=55 Identities=27% Similarity=0.409 Sum_probs=43.6
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCChhhHHHHhhHHHHHHHHHHHhHh
Q psy11615 144 AFSDLEVCQLKQEIELLRNELQRAEGELEDRCWAPPPGLQHWLQLTHEIENKAYVKKKL 202 (224)
Q Consensus 144 ~~sd~Els~l~eELe~vR~aL~~AE~eLe~~~ws~P~~LQ~wLQlT~EvE~q~y~~Kk~ 202 (224)
...+.++.+|++|+..+|.-+.+|++.... +|.-+-.|+-.-.++|..+-..|+-
T Consensus 109 a~~e~ei~kl~~e~~elr~~~~~~~k~~~~----~re~~~~~~~~l~~leAe~~~~krr 163 (546)
T KOG0977|consen 109 AKLEIEITKLREELKELRKKLEKAEKERRG----AREKLDDYLSRLSELEAEINTLKRR 163 (546)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHhh----hHHHHHHHhhhhhhhhhHHHHHHHH
Confidence 445667778889999999999999886665 4999999999988888776655543
No 346
>PF11169 DUF2956: Protein of unknown function (DUF2956); InterPro: IPR021339 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=21.76 E-value=1.8e+02 Score=23.76 Aligned_cols=60 Identities=17% Similarity=0.158 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHhcccccccchhh-hhcccccccCCCCCCchhHHHHHHHHHHHHHHHHHH
Q psy11615 10 QLQQAREACEKLRKKRSSLVGAFV-STHGKSIDDVDRNSTSHVKDYILGTLILIALTICWY 69 (224)
Q Consensus 10 ql~~a~e~~eki~kKr~s~~gsf~-~aH~~s~D~VDRer~~~wKDi~Lv~slviavgGcWf 69 (224)
|...=-..+||-+||....-..-. ..+....+.++....+.|=-+.|+++--+|+++.||
T Consensus 42 QqK~KaRe~DK~rKk~~k~k~~~~~~~~~~~~~~~~~~~~~~~LPW~LL~lSW~gF~~Y~~ 102 (103)
T PF11169_consen 42 QQKEKAREADKARKKQQKAKQRETAQEEEEPTTEISSQSRSSWLPWGLLVLSWIGFIAYIF 102 (103)
T ss_pred HHHHHHHHHhHHHHHHHHHhccccccccccccccccccccccchhHHHHHHHHHHHHHHHH
Confidence 333333457888777654333221 222222223333444445555566666667776665
No 347
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=21.61 E-value=5.5e+02 Score=22.67 Aligned_cols=22 Identities=23% Similarity=0.222 Sum_probs=9.0
Q ss_pred hhHhHHHHHHHHHHHHHHHHHH
Q psy11615 87 DMEGLQRAELDLANLQKELERA 108 (224)
Q Consensus 87 dle~Lq~AE~sl~dlQ~~Le~a 108 (224)
...++..+...-..|.+++...
T Consensus 67 ~~~~~~~l~~en~~L~~e~~~l 88 (276)
T PRK13922 67 SLASLFDLREENEELKKELLEL 88 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444333
No 348
>PRK09343 prefoldin subunit beta; Provisional
Probab=21.54 E-value=4.3e+02 Score=21.16 Aligned_cols=32 Identities=19% Similarity=0.330 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy11615 97 DLANLQKELERARQEQENAASEKIKLERRLQE 128 (224)
Q Consensus 97 sl~dlQ~~Le~aqee~~~v~~EK~~LE~kl~~ 128 (224)
.+.+.-.+++..+...+.+...++.|+..+++
T Consensus 8 ~~q~~~~~~q~lq~~l~~~~~q~~~le~q~~e 39 (121)
T PRK09343 8 EVQAQLAQLQQLQQQLERLLQQKSQIDLELRE 39 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556666666666777777777777766
No 349
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=21.44 E-value=5.5e+02 Score=25.15 Aligned_cols=13 Identities=23% Similarity=0.304 Sum_probs=7.8
Q ss_pred HHHHHHHHhcccc
Q psy11615 14 AREACEKLRKKRS 26 (224)
Q Consensus 14 a~e~~eki~kKr~ 26 (224)
-+|-|-.||-|-+
T Consensus 124 PrEfA~likNkFG 136 (395)
T PF10267_consen 124 PREFAHLIKNKFG 136 (395)
T ss_pred cHHHHhcccCCCC
Confidence 3566667765554
No 350
>PRK15136 multidrug efflux system protein EmrA; Provisional
Probab=21.43 E-value=6.8e+02 Score=23.47 Aligned_cols=18 Identities=22% Similarity=0.519 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHhhhh
Q psy11615 155 QEIELLRNELQRAEGELE 172 (224)
Q Consensus 155 eELe~vR~aL~~AE~eLe 172 (224)
+++++.+.++..|+..++
T Consensus 158 ~~ld~a~~~~~~a~a~l~ 175 (390)
T PRK15136 158 EELQHARDAVASAQAQLD 175 (390)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 566666666666666554
No 351
>KOG4593|consensus
Probab=21.33 E-value=1e+03 Score=25.44 Aligned_cols=114 Identities=19% Similarity=0.269 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHH----HHHHHHhhhhhhchHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH------
Q psy11615 52 KDYILGTLILIA----LTICWYVYRQKESSQQHLRRMMKDMEGLQRAELDLANLQKELERARQEQENAASEKIK------ 121 (224)
Q Consensus 52 KDi~Lv~slvia----vgGcWfAy~Qnr~Sk~hl~~Mmkdle~Lq~AE~sl~dlQ~~Le~aqee~~~v~~EK~~------ 121 (224)
++.++.+++-=. .---|=+|.|+-..+.-=+-+|+-...|.+--+.+.+.++.+...+...+.+...+|.
T Consensus 152 k~ae~~~lr~k~dss~s~~q~e~~~~~~~~~~~~s~l~~~eke~~~~~~ql~~~~q~~~~~~~~l~e~~~~~qq~a~~~~ 231 (716)
T KOG4593|consen 152 KLAELGTLRNKLDSSLSELQWEVMLQEMRAKRLHSELQNEEKELDRQHKQLQEENQKIQELQASLEERADHEQQNAELEQ 231 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 455555554432 2235778888877766555556555555444444444444444333333333322221
Q ss_pred ----------HHHHHHHHh-----------hhhcccccccccccchhHHHHHHHHHHHHHHHHHHHHHh
Q psy11615 122 ----------LERRLQEHQ-----------ALQGDASDLKSSSAFSDLEVCQLKQEIELLRNELQRAEG 169 (224)
Q Consensus 122 ----------LE~kl~~~~-----------~ak~ea~rl~~~r~~sd~Els~l~eELe~vR~aL~~AE~ 169 (224)
+-..++|.+ ....++.- +|+..+ -|--|++|++-+++.|.+++.
T Consensus 232 ql~~~~ele~i~~~~~dqlqel~~l~~a~~q~~ee~~~---~re~~~-tv~~LqeE~e~Lqskl~~~~~ 296 (716)
T KOG4593|consen 232 QLSLSEELEAINKNMKDQLQELEELERALSQLREELAT---LRENRE-TVGLLQEELEGLQSKLGRLEK 296 (716)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhhh-hhHHHHHHHHHHHHHHHHHHH
Confidence 112222311 12233332 333333 234467899999998888874
No 352
>PF07271 Cytadhesin_P30: Cytadhesin P30/P32; InterPro: IPR009896 This family consists of several Mycoplasma species specific Cytadhesin P32 and P30 proteins. P30 has been found to be membrane associated and localised on the tip organelle. It is thought that it is important in cytadherence and virulence [].; GO: 0007157 heterophilic cell-cell adhesion, 0009405 pathogenesis, 0016021 integral to membrane
Probab=21.18 E-value=2.8e+02 Score=26.21 Aligned_cols=27 Identities=15% Similarity=0.165 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhchHHHH
Q psy11615 52 KDYILGTLILIALTICWYVYRQKESSQQHL 81 (224)
Q Consensus 52 KDi~Lv~slviavgGcWfAy~Qnr~Sk~hl 81 (224)
-+|..+.+|+++-+|. -+|. |+-|.||
T Consensus 77 ~G~~~v~liLgl~ig~-p~~k--rkek~~i 103 (279)
T PF07271_consen 77 AGLLAVALILGLAIGI-PIYK--RKEKRMI 103 (279)
T ss_pred hhHHHHHHHHHHhhcc-hhhh--hhHHHHH
Confidence 3566666666666666 4444 3344444
No 353
>PRK07718 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=21.18 E-value=70 Score=26.24 Aligned_cols=12 Identities=8% Similarity=-0.249 Sum_probs=7.3
Q ss_pred HHHHHHhhhhhh
Q psy11615 64 LTICWYVYRQKE 75 (224)
Q Consensus 64 vgGcWfAy~Qnr 75 (224)
.||.||.+.+..
T Consensus 20 g~~~~~~~~~~~ 31 (142)
T PRK07718 20 GTAALVLVMGFS 31 (142)
T ss_pred HHHHHhhhcccC
Confidence 356677776643
No 354
>PRK11546 zraP zinc resistance protein; Provisional
Probab=21.11 E-value=4e+02 Score=22.68 Aligned_cols=17 Identities=6% Similarity=-0.066 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHhh
Q psy11615 55 ILGTLILIALTICWYVY 71 (224)
Q Consensus 55 ~Lv~slviavgGcWfAy 71 (224)
++++++|++++|.-||-
T Consensus 11 ~~ala~~~~~s~~a~A~ 27 (143)
T PRK11546 11 LMALSALAMGSGSAFAH 27 (143)
T ss_pred HHHHHHHHHhhhHHHHh
Confidence 45677888888887765
No 355
>PRK13883 conjugal transfer protein TrbH; Provisional
Probab=21.06 E-value=95 Score=26.56 Aligned_cols=34 Identities=24% Similarity=0.426 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHH------HhhhhhhchHHHHHHHHHhhH
Q psy11615 52 KDYILGTLILIALTICW------YVYRQKESSQQHLRRMMKDME 89 (224)
Q Consensus 52 KDi~Lv~slviavgGcW------fAy~Qnr~Sk~hl~~Mmkdle 89 (224)
+-++++++++++++||- |+ --|..--..|..||=
T Consensus 2 rk~l~~~~l~l~LaGCAt~~~gnf~----~~s~~~a~~iA~D~v 41 (151)
T PRK13883 2 RKIVLLALLALALGGCATSQYGNFV----QASAADQQKLATDAV 41 (151)
T ss_pred hhHHHHHHHHHHHhcccCCCCCccc----ccCHHHHHHHHHHHH
Confidence 45677778888899994 33 245555566777764
No 356
>TIGR00847 ccoS cytochrome oxidase maturation protein, cbb3-type. CcoS from Rhodobacter capsulatus has been shown essential for incorporation of redox-active prosthetic groups (heme, Cu) into cytochrome cbb(3) oxidase. FixS of Bradyrhizobium japonicum appears to have the same function. Members of this family are found so far in organisms with a cbb3-type cytochrome oxidase, including Neisseria meningitidis, Helicobacter pylori, Campylobacter jejuni, Caulobacter crescentus, Bradyrhizobium japonicum, and Rhodobacter capsulatus.
Probab=20.93 E-value=1.1e+02 Score=21.78 Aligned_cols=14 Identities=7% Similarity=-0.154 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHH
Q psy11615 56 LGTLILIALTICWY 69 (224)
Q Consensus 56 Lv~slviavgGcWf 69 (224)
..+|+++|++|.|+
T Consensus 8 IpiSl~l~~~~l~~ 21 (51)
T TIGR00847 8 IPISLLLGGVGLVA 21 (51)
T ss_pred HHHHHHHHHHHHHH
Confidence 44555555555443
No 357
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=20.69 E-value=2.1e+02 Score=25.57 Aligned_cols=32 Identities=31% Similarity=0.428 Sum_probs=28.3
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q psy11615 143 SAFSDLEVCQLKQEIELLRNELQRAEGELEDR 174 (224)
Q Consensus 143 r~~sd~Els~l~eELe~vR~aL~~AE~eLe~~ 174 (224)
..++|-|.-+|+.||..+=..|.+|+.+-+.+
T Consensus 91 ~~~~dwEevrLkrELa~Le~~l~~~~~~~~~~ 122 (195)
T PF12761_consen 91 TEGTDWEEVRLKRELAELEEKLSKVEQAAESR 122 (195)
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 46888999999999999999999999988874
No 358
>PLN02320 seryl-tRNA synthetase
Probab=20.64 E-value=4.5e+02 Score=26.53 Aligned_cols=32 Identities=31% Similarity=0.405 Sum_probs=23.9
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q psy11615 87 DMEGLQRAELDLANLQKELERARQEQENAASE 118 (224)
Q Consensus 87 dle~Lq~AE~sl~dlQ~~Le~aqee~~~v~~E 118 (224)
|++.+...-.....++.+++..+.++..+..+
T Consensus 91 ~vd~l~~ld~~~r~~~~~~~~lr~ern~~sk~ 122 (502)
T PLN02320 91 NLELVLELYENMLALQKEVERLRAERNAVANK 122 (502)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47777777777888888888888877666554
No 359
>PRK09578 periplasmic multidrug efflux lipoprotein precursor; Reviewed
Probab=20.62 E-value=6.8e+02 Score=23.10 Aligned_cols=21 Identities=29% Similarity=0.341 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhh
Q psy11615 153 LKQEIELLRNELQRAEGELED 173 (224)
Q Consensus 153 l~eELe~vR~aL~~AE~eLe~ 173 (224)
++.++...+.+|..|+..|+.
T Consensus 151 a~a~~~~a~a~l~~a~~~l~~ 171 (385)
T PRK09578 151 AKAAVASAKAELARAQLQLDY 171 (385)
T ss_pred HHHHHHHHHHHHHHHHHhhcC
Confidence 356667777777777766654
No 360
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=20.57 E-value=7.3e+02 Score=25.10 Aligned_cols=70 Identities=23% Similarity=0.253 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH---hhhhcccccccccccchhHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy11615 98 LANLQKELERARQEQENAASEKIKLERRLQEH---QALQGDASDLKSSSAFSDLEVCQLKQEIELLRNELQRAEGELE 172 (224)
Q Consensus 98 l~dlQ~~Le~aqee~~~v~~EK~~LE~kl~~~---~~ak~ea~rl~~~r~~sd~Els~l~eELe~vR~aL~~AE~eLe 172 (224)
+.++.++++.+..+++....|-..|.++-.+. |....++ .+...+.+..+|+.|+.+++..|..-.++|+
T Consensus 68 ~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~-----~~~~~~~~~~ql~~~~~~~~~~l~~l~~~l~ 140 (472)
T TIGR03752 68 VKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQS-----ETQELTKEIEQLKSERQQLQGLIDQLQRRLA 140 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh-----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55566667777666666666655554443331 1111111 1122233555666677777777766666663
No 361
>PRK00226 greA transcription elongation factor GreA; Reviewed
Probab=20.55 E-value=3e+02 Score=22.67 Aligned_cols=60 Identities=22% Similarity=0.235 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhcccccccccccchhH-----HHHHHHHHHHHHHHHHHHHHh
Q psy11615 97 DLANLQKELERARQEQENAASEKIKLERRLQEHQALQGDASDLKSSSAFSDL-----EVCQLKQEIELLRNELQRAEG 169 (224)
Q Consensus 97 sl~dlQ~~Le~aqee~~~v~~EK~~LE~kl~~~~~ak~ea~rl~~~r~~sd~-----Els~l~eELe~vR~aL~~AE~ 169 (224)
.+..|+++|+.+....+....+ +-.+|..+.+++++++- ...+++..+..+...|..|..
T Consensus 11 g~~~L~~eL~~l~~~~r~~~~~-------------~~~~A~~~gdl~En~~y~~a~~~~~~~~~ri~~l~~~L~~a~i 75 (157)
T PRK00226 11 GYEKLEEELEELKTVERPEIIE-------------AIAEAREHGDLSENAEYHAAKEEQGFIEGRIRELEDKLSNAEV 75 (157)
T ss_pred HHHHHHHHHHHHHhcccHHHHH-------------HHHHHHHcCCccccccchHHHHHHHHHHHHHHHHHHHHHhCee
Confidence 4556667777665433222221 22234445556666532 222235566666667776653
No 362
>PF10112 Halogen_Hydrol: 5-bromo-4-chloroindolyl phosphate hydrolysis protein; InterPro: IPR018770 This entry consists of prokaryotic proteins that mediate the hydrolysis of 5-bromo-4-chloroindolyl phosphate bonds.
Probab=20.49 E-value=4e+02 Score=22.53 Aligned_cols=16 Identities=25% Similarity=0.106 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHhhh
Q psy11615 57 GTLILIALTICWYVYR 72 (224)
Q Consensus 57 v~slviavgGcWfAy~ 72 (224)
++++++|++|.|..|.
T Consensus 34 ~l~~l~~~~~~~~~~~ 49 (199)
T PF10112_consen 34 LLSLLIGAVAFAVVYL 49 (199)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3455666655555444
No 363
>PRK05886 yajC preprotein translocase subunit YajC; Validated
Probab=20.47 E-value=1.9e+02 Score=23.48 Aligned_cols=34 Identities=15% Similarity=0.178 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHhhh--hhhchHHHHHHHHHhh
Q psy11615 54 YILGTLILIALTICWYVYR--QKESSQQHLRRMMKDM 88 (224)
Q Consensus 54 i~Lv~slviavgGcWfAy~--Qnr~Sk~hl~~Mmkdl 88 (224)
+..++.+++.+++.||..+ |+|..|.| .+|+..|
T Consensus 4 ~~~ll~lv~i~~i~yF~~iRPQkKr~K~~-~~m~~~L 39 (109)
T PRK05886 4 LVLFLPFLLIMGGFMYFASRRQRKAMQAT-IDLHESL 39 (109)
T ss_pred HHHHHHHHHHHHHHHHHHccHHHHHHHHH-HHHHHhc
Confidence 3344444444556665543 54544444 4454443
No 364
>PF09320 DUF1977: Domain of unknown function (DUF1977); InterPro: IPR015399 This C-terminal domain is functionally uncharacterised and predominantly found in Dnaj-like proteins.
Probab=20.34 E-value=1.6e+02 Score=22.83 Aligned_cols=27 Identities=22% Similarity=0.218 Sum_probs=19.8
Q ss_pred HHHhhHHHHHHHHHHHhHhhHHHHHHH
Q psy11615 184 HWLQLTHEIENKAYVKKKLMAEKQLQQ 210 (224)
Q Consensus 184 ~wLQlT~EvE~q~y~~Kk~~AekQL~~ 210 (224)
++-++-.+||..|++..+.+|.++...
T Consensus 47 ~l~~lE~~VE~~yv~~L~~~C~~E~~~ 73 (107)
T PF09320_consen 47 KLRQLERQVENDYVQNLRNQCERERQY 73 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355677788888888888888776543
No 365
>PF14276 DUF4363: Domain of unknown function (DUF4363)
Probab=20.25 E-value=4.2e+02 Score=20.54 Aligned_cols=13 Identities=23% Similarity=0.235 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHH
Q psy11615 56 LGTLILIALTICW 68 (224)
Q Consensus 56 Lv~slviavgGcW 68 (224)
+++.+++-++|+|
T Consensus 4 ~~i~~lii~~~~~ 16 (121)
T PF14276_consen 4 IIIFILIIALSIF 16 (121)
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444444
No 366
>PF12592 DUF3763: Protein of unknown function (DUF3763); InterPro: IPR022547 This domain is found in bacterial regulartory ATPases 3.6.3. from EC, and is approximately 60 amino acids in length. The domain is found C-terminal to PF07728 from PFAM. There is a single completely conserved residue F that may be functionally important. ; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances; PDB: 3NBX_X.
Probab=20.16 E-value=1.5e+02 Score=21.41 Aligned_cols=30 Identities=30% Similarity=0.406 Sum_probs=20.3
Q ss_pred HHHHHHHhhHhHHHHHHHHHHHHHHHHHHH
Q psy11615 80 HLRRMMKDMEGLQRAELDLANLQKELERAR 109 (224)
Q Consensus 80 hl~~Mmkdle~Lq~AE~sl~dlQ~~Le~aq 109 (224)
|.--+-=|=+-|-+.|.||.++.++|+.++
T Consensus 26 ~qPhlFI~~~wl~~IE~Sl~~l~eqL~q~~ 55 (57)
T PF12592_consen 26 HQPHLFIDSEWLAAIEASLQQLAEQLEQLK 55 (57)
T ss_dssp T---TTS-HHHHHHHHHHHHHHHHHHHHH-
T ss_pred cCCCcCcCHHHHHHHHHHHHHHHHHHHHHh
Confidence 333333455678899999999999999875
No 367
>PF10562 CaM_bdg_C0: Calmodulin-binding domain C0 of NMDA receptor NR1 subunit; InterPro: IPR018882 This is a very short highly conserved domain that is C-terminal to the cytosolic transmembrane region IV of the NMDA-receptor 1. It has been shown to bind Calmodulin-Calcium with high affinity. The ionotropic N-methyl-D-aspartate receptor (NMDAR) is a major source of calcium flux into neurons in the brain and plays a critical role in learning, memory, neural development, and synaptic plasticity. Calmodulin (CaM) regulates NMDARs by binding tightly to the C0 and C1 regions of their NR1 subunit. The conserved tryptophan is considered to be the anchor residue [].
Probab=20.10 E-value=1.4e+02 Score=19.38 Aligned_cols=26 Identities=35% Similarity=0.355 Sum_probs=20.1
Q ss_pred HHHhHhhHHHHHHHHHHHHHhhcccc
Q psy11615 197 YVKKKLMAEKQLQQAREARFDRGKCI 222 (224)
Q Consensus 197 y~~Kk~~AekQL~~AkE~~EKikK~~ 222 (224)
|-+-+.--+++|+.|+.+++|-|+-|
T Consensus 3 YKkH~~~kqk~~elAr~a~dkWR~~i 28 (29)
T PF10562_consen 3 YKKHQIRKQKQLELARHAADKWRGNI 28 (29)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34444556799999999999988765
No 368
>PHA02975 hypothetical protein; Provisional
Probab=20.08 E-value=1.3e+02 Score=23.01 Aligned_cols=9 Identities=22% Similarity=0.593 Sum_probs=5.8
Q ss_pred ccchhhhhc
Q psy11615 28 LVGAFVSTH 36 (224)
Q Consensus 28 ~~gsf~~aH 36 (224)
+||.|+.+-
T Consensus 8 iFGvFmsS~ 16 (69)
T PHA02975 8 TYGVFLESN 16 (69)
T ss_pred HHHhhcCCC
Confidence 577777544
No 369
>PF14163 SieB: Superinfection exclusion protein B
Probab=20.05 E-value=2.5e+02 Score=22.78 Aligned_cols=15 Identities=20% Similarity=0.339 Sum_probs=10.5
Q ss_pred CCCCChhhHHHHhhH
Q psy11615 175 CWAPPPGLQHWLQLT 189 (224)
Q Consensus 175 ~ws~P~~LQ~wLQlT 189 (224)
.-..|.-+|+|+...
T Consensus 130 ~~~i~~~~~p~~~~~ 144 (151)
T PF14163_consen 130 DFKIPYNYQPWANRR 144 (151)
T ss_pred ccCCChhhHHHHHHH
Confidence 456678888887654
Done!