Query psy11615
Match_columns 224
No_of_seqs 64 out of 66
Neff 3.6
Searched_HMMs 29240
Date Fri Aug 16 23:09:27 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11615.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11615hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ter_A Mammalian stromal inter 99.9 8E-28 2.7E-32 196.8 8.6 68 155-222 6-75 (136)
2 3teq_A Stromal interaction mol 99.7 2.2E-18 7.4E-23 135.2 5.3 43 179-221 1-43 (101)
3 3teq_A Stromal interaction mol 99.7 2.1E-19 7.1E-24 141.0 -0.9 56 5-60 24-96 (101)
4 3ter_A Mammalian stromal inter 99.6 3.6E-18 1.2E-22 139.9 -2.5 57 5-61 55-130 (136)
5 2i1j_A Moesin; FERM, coiled-co 91.1 0.082 2.8E-06 50.8 2.2 60 116-178 404-463 (575)
6 3na7_A HP0958; flagellar bioge 90.2 6.5 0.00022 33.4 13.1 67 147-220 59-125 (256)
7 2dfs_A Myosin-5A; myosin-V, in 86.9 4.3 0.00015 41.8 11.2 77 80-169 961-1044(1080)
8 3o0z_A RHO-associated protein 86.8 10 0.00035 31.8 11.6 88 77-168 28-117 (168)
9 2dfs_A Myosin-5A; myosin-V, in 83.8 6 0.0002 40.8 10.6 82 92-173 924-1009(1080)
10 2k48_A Nucleoprotein; viral pr 83.3 15 0.0005 29.0 10.3 52 154-209 48-99 (107)
11 4dci_A Uncharacterized protein 81.0 17 0.00059 29.8 10.4 64 149-212 37-104 (150)
12 4dk0_A Putative MACA; alpha-ha 80.4 2.9 0.0001 35.9 5.9 30 150-179 131-160 (369)
13 2eqb_B RAB guanine nucleotide 79.9 4 0.00014 31.6 5.9 32 97-128 27-58 (97)
14 3oja_B Anopheles plasmodium-re 78.9 25 0.00085 32.1 11.9 26 149-174 559-584 (597)
15 3vkg_A Dynein heavy chain, cyt 78.2 51 0.0018 38.2 16.2 31 78-108 1916-1946(3245)
16 1i84_S Smooth muscle myosin he 76.7 11 0.00039 38.6 9.8 11 14-24 748-758 (1184)
17 2e7s_A RAB guanine nucleotide 76.1 9.7 0.00033 30.9 7.4 32 97-128 47-78 (135)
18 3tnu_A Keratin, type I cytoske 73.4 30 0.001 26.8 9.5 43 86-128 28-70 (131)
19 3fpp_A Macrolide-specific effl 73.0 3.4 0.00012 35.2 4.2 24 91-114 71-94 (341)
20 3tnu_B Keratin, type II cytosk 71.9 32 0.0011 26.5 10.3 43 86-128 26-68 (129)
21 1x79_B RAB GTPase binding effe 71.9 32 0.0011 27.0 9.3 85 101-208 11-102 (112)
22 3ghg_A Fibrinogen alpha chain; 71.6 11 0.00039 36.8 7.9 119 71-212 56-189 (562)
23 3mq9_A Bone marrow stromal ant 71.3 30 0.001 30.9 10.2 81 76-166 370-468 (471)
24 2no2_A HIP-I, huntingtin-inter 68.6 26 0.00088 26.9 8.0 31 98-128 10-40 (107)
25 2ocy_A RAB guanine nucleotide 67.7 27 0.00091 28.8 8.3 89 79-173 44-133 (154)
26 3hnw_A Uncharacterized protein 66.8 26 0.0009 27.9 7.9 27 147-173 109-135 (138)
27 3tul_A Cell invasion protein S 66.6 23 0.00079 29.5 7.7 55 90-172 70-124 (158)
28 1f5n_A Interferon-induced guan 63.4 23 0.00079 34.2 8.2 75 86-163 494-582 (592)
29 1wt6_A Myotonin-protein kinase 62.6 25 0.00087 26.4 6.6 13 149-161 60-72 (81)
30 2v71_A Nuclear distribution pr 61.7 28 0.00096 29.5 7.6 51 93-157 127-177 (189)
31 3o0z_A RHO-associated protein 61.0 67 0.0023 26.8 9.6 61 96-159 69-129 (168)
32 1uix_A RHO-associated kinase; 60.2 47 0.0016 24.3 7.9 49 79-130 4-52 (71)
33 3oja_B Anopheles plasmodium-re 55.7 1.2E+02 0.0041 27.5 12.2 31 98-128 458-488 (597)
34 4fi5_A Nucleoprotein; structur 55.6 69 0.0024 25.4 8.3 61 149-213 30-90 (113)
35 1c1g_A Tropomyosin; contractIl 54.9 70 0.0024 24.6 13.0 12 204-215 144-155 (284)
36 2jwa_A Receptor tyrosine-prote 53.1 18 0.0006 24.3 3.9 36 41-76 4-39 (44)
37 3na7_A HP0958; flagellar bioge 52.7 83 0.0028 26.5 9.1 37 92-128 35-71 (256)
38 1l8d_A DNA double-strand break 51.4 68 0.0023 23.4 8.9 37 93-129 7-43 (112)
39 1c1g_A Tropomyosin; contractIl 49.0 88 0.003 24.0 14.3 16 202-217 149-164 (284)
40 2i1j_A Moesin; FERM, coiled-co 49.0 29 0.001 33.2 6.3 57 94-153 333-396 (575)
41 2zqm_A Prefoldin beta subunit 48.8 75 0.0026 23.1 9.3 25 149-173 85-109 (117)
42 2ic6_A Nucleocapsid protein; h 47.4 85 0.0029 23.3 8.6 61 149-213 13-73 (78)
43 3qh9_A Liprin-beta-2; coiled-c 47.1 48 0.0016 24.9 5.9 28 101-128 24-51 (81)
44 2l2t_A Receptor tyrosine-prote 45.6 33 0.0011 22.9 4.3 19 58-76 20-38 (44)
45 3cve_A Homer protein homolog 1 45.5 65 0.0022 23.5 6.3 24 95-118 20-43 (72)
46 4aj5_K Spindle and kinetochore 44.9 18 0.00061 29.1 3.4 31 80-110 2-33 (123)
47 2ic9_A Nucleocapsid protein; h 44.6 1.1E+02 0.0036 23.6 9.2 61 149-213 13-73 (96)
48 1v54_D Cytochrome C oxidase su 44.5 17 0.00057 29.8 3.3 41 30-71 58-98 (147)
49 2ocy_A RAB guanine nucleotide 42.1 1.4E+02 0.0049 24.4 10.8 74 81-164 22-95 (154)
50 3twe_A Alpha4H; unknown functi 41.9 22 0.00076 21.5 2.7 15 97-111 9-23 (27)
51 2v4h_A NF-kappa-B essential mo 41.3 1.2E+02 0.0041 23.8 7.6 17 30-46 2-18 (110)
52 1x79_B RAB GTPase binding effe 41.2 45 0.0015 26.2 5.2 37 74-110 37-73 (112)
53 1wt6_A Myotonin-protein kinase 40.5 1.1E+02 0.0039 22.8 7.9 14 153-166 57-70 (81)
54 1z65_A PRPLP, prion-like prote 39.3 5.6 0.00019 25.0 -0.2 9 64-72 5-13 (30)
55 4gkw_A Spindle assembly abnorm 39.0 1.6E+02 0.0056 24.2 9.4 66 95-173 17-85 (167)
56 2f1m_A Acriflavine resistance 38.8 1.6E+02 0.0054 24.0 9.3 20 154-173 111-130 (277)
57 3vkg_A Dynein heavy chain, cyt 38.5 3.8E+02 0.013 31.4 13.8 95 78-172 1933-2038(3245)
58 1cd1_A CD1, MCD1D.1; immunolog 37.9 6.8 0.00023 34.0 0.0 16 58-73 294-309 (315)
59 3hhm_B NISH2 P85alpha; PI3KCA, 37.6 73 0.0025 29.0 6.8 23 198-220 307-329 (373)
60 3q8t_A Beclin-1; autophagy, AT 37.5 1.3E+02 0.0043 22.5 13.2 32 190-221 65-96 (96)
61 2y69_D Cytochrome C oxidase su 37.0 25 0.00086 29.4 3.3 40 31-71 81-120 (169)
62 3fpp_A Macrolide-specific effl 36.2 1.6E+02 0.0054 24.8 8.3 16 95-110 82-97 (341)
63 3ol1_A Vimentin; structural ge 36.1 1.4E+02 0.0049 22.7 9.7 14 96-109 48-61 (119)
64 3r2p_A Apolipoprotein A-I; amp 35.7 1.7E+02 0.0058 23.4 10.2 33 133-165 132-165 (185)
65 2xs1_A Programmed cell death 6 35.4 3.1E+02 0.011 26.5 11.1 81 70-168 428-509 (704)
66 3qfl_A MLA10; coiled-coil, (CC 33.4 73 0.0025 23.8 5.2 45 145-193 23-72 (115)
67 4dk0_A Putative MACA; alpha-ha 33.4 1.4E+02 0.0048 25.3 7.6 20 91-110 72-91 (369)
68 3nmd_A CGMP dependent protein 31.8 1E+02 0.0035 22.5 5.4 14 98-111 21-34 (72)
69 2eqb_B RAB guanine nucleotide 31.3 1.8E+02 0.006 22.3 10.8 59 96-164 5-63 (97)
70 2lx0_A Membrane fusion protein 30.8 36 0.0012 21.3 2.4 28 48-75 3-32 (32)
71 3oja_A Leucine-rich immune mol 30.8 2.9E+02 0.0098 24.6 10.2 6 64-69 345-350 (487)
72 3cvf_A Homer-3, homer protein 30.7 89 0.0031 23.1 5.1 18 98-115 29-46 (79)
73 3tnu_A Keratin, type I cytoske 30.7 1.8E+02 0.0062 22.3 8.3 58 149-218 46-103 (131)
74 3qne_A Seryl-tRNA synthetase, 30.0 1.4E+02 0.0047 28.4 7.5 70 88-171 32-101 (485)
75 3oja_A Leucine-rich immune mol 29.8 2.1E+02 0.007 25.6 8.4 13 156-168 457-469 (487)
76 3q8t_A Beclin-1; autophagy, AT 29.8 1.7E+02 0.0059 21.7 8.8 19 154-172 73-91 (96)
77 1go4_E MAD1 (mitotic arrest de 29.5 1.9E+02 0.0065 22.1 8.8 32 97-128 13-44 (100)
78 1vf7_A Multidrug resistance pr 29.2 1.9E+02 0.0066 24.9 7.9 31 145-175 109-139 (369)
79 2e7s_A RAB guanine nucleotide 28.6 1.7E+02 0.0057 23.6 6.8 72 83-164 12-83 (135)
80 2dq0_A Seryl-tRNA synthetase; 28.5 2.6E+02 0.0089 25.9 9.0 31 88-118 30-60 (455)
81 2lem_A Apolipoprotein A-I; lip 26.2 2.7E+02 0.0093 22.9 8.1 34 132-165 129-163 (216)
82 3ol1_A Vimentin; structural ge 26.1 1.8E+02 0.0061 22.2 6.3 34 95-128 19-52 (119)
83 3tnu_B Keratin, type II cytosk 26.0 2.2E+02 0.0075 21.7 8.6 57 150-218 45-101 (129)
84 3lay_A Zinc resistance-associa 25.6 1.9E+02 0.0065 23.8 6.8 20 148-167 113-132 (175)
85 2ks1_B Epidermal growth factor 25.3 60 0.0021 21.5 3.0 23 54-76 17-39 (44)
86 1wle_A Seryl-tRNA synthetase; 24.2 4.2E+02 0.014 25.0 9.7 32 87-118 68-99 (501)
87 1zza_A Stannin, AG8_1; helix, 24.1 40 0.0014 25.4 2.2 27 51-77 11-44 (90)
88 1oqw_A Fimbrial protein; type 23.5 1.8E+02 0.0063 21.9 6.0 22 73-94 25-46 (144)
89 2dq3_A Seryl-tRNA synthetase; 23.3 2.5E+02 0.0085 25.6 7.8 70 88-171 29-98 (425)
90 3lnn_A Membrane fusion protein 22.4 2.8E+02 0.0096 23.4 7.5 23 149-171 130-152 (359)
91 2k6i_A Uncharacterized protein 21.1 67 0.0023 22.5 2.7 22 200-221 35-56 (56)
92 4dyl_A Tyrosine-protein kinase 21.0 4.4E+02 0.015 23.4 9.7 32 98-129 311-342 (406)
93 2rdd_B UPF0092 membrane protei 20.4 1.1E+02 0.0037 19.0 3.4 8 73-80 24-31 (37)
94 1nfn_A Apolipoprotein E3; lipi 20.3 1.4E+02 0.0049 24.4 5.0 24 142-165 137-160 (191)
95 2f95_B Sensory rhodopsin II tr 20.0 67 0.0023 23.3 2.7 38 54-91 60-97 (163)
96 1ca9_A TRAF2, protein (TNF rec 20.0 1.2E+02 0.004 24.0 4.3 33 76-108 3-36 (192)
No 1
>3ter_A Mammalian stromal interaction molecule-1; dimer, metal binding protein; 2.55A {Caenorhabditis elegans}
Probab=99.94 E-value=8e-28 Score=196.83 Aligned_cols=68 Identities=31% Similarity=0.214 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHHHhhhhh--cCCCCChhhHHHHhhHHHHHHHHHHHhHhhHHHHHHHHHHHHHhhcccc
Q psy11615 155 QEIELLRNELQRAEGELED--RCWAPPPGLQHWLQLTHEIENKAYVKKKLMAEKQLQQAREARFDRGKCI 222 (224)
Q Consensus 155 eELe~vR~aL~~AE~eLe~--~~ws~P~~LQ~wLQlT~EvE~q~y~~Kk~~AekQL~~AkE~~EKikK~~ 222 (224)
+|||+||++|++||++|++ +||+||++||+|||+|||+|++|||+||++|++||.+|||+||||+||=
T Consensus 6 ~Ele~lr~aL~~AE~eLe~~~~~w~~p~~Lq~wLq~T~E~E~q~~~~kk~~Aekql~~Ake~~eKlkKKr 75 (136)
T 3ter_A 6 TEMENLRVQLEEAERRLEANSNGSQAPLALQPLLRRTCENEMAFLEKQRQDCFKEMKEAIEMVDRLQKKQ 75 (136)
T ss_dssp HHHHHHHHHHHHHHHHHC-----CCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCcCCCHHHHHHHHHHhHHHHHHHHHccccHHHHHHHHHHHHHHHHHhh
Confidence 6999999999999999987 4999999999999999999999999999999999999999999999983
No 2
>3teq_A Stromal interaction molecule 1; signaling protein; 1.90A {Homo sapiens}
Probab=99.73 E-value=2.2e-18 Score=135.18 Aligned_cols=43 Identities=51% Similarity=0.600 Sum_probs=42.6
Q ss_pred ChhhHHHHhhHHHHHHHHHHHhHhhHHHHHHHHHHHHHhhccc
Q psy11615 179 PPGLQHWLQLTHEIENKAYVKKKLMAEKQLQQAREARFDRGKC 221 (224)
Q Consensus 179 P~~LQ~wLQlT~EvE~q~y~~Kk~~AekQL~~AkE~~EKikK~ 221 (224)
|++||+|||+|||+|++|||+||++|++||.+|+|+||||+||
T Consensus 1 p~~Lq~wLq~T~e~E~q~~~~kk~~aekql~~A~e~~eKl~KK 43 (101)
T 3teq_A 1 PEALQKWLQLTHEVEVQYYNIKKQNAEKQLMVAKEGAEKIKKK 43 (101)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHhHhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999998
No 3
>3teq_A Stromal interaction molecule 1; signaling protein; 1.90A {Homo sapiens}
Probab=99.72 E-value=2.1e-19 Score=140.96 Aligned_cols=56 Identities=41% Similarity=0.521 Sum_probs=53.2
Q ss_pred hchHHHHHHHHHHHHHHhcccccccchhhhhcccccccCC-----------------CCCCchhHHHHHHHHH
Q psy11615 5 FMAEKQLQQAREACEKLRKKRSSLVGAFVSTHGKSIDDVD-----------------RNSTSHVKDYILGTLI 60 (224)
Q Consensus 5 ~~a~~ql~~a~e~~eki~kKr~s~~gsf~~aH~~s~D~VD-----------------Rer~~~wKDi~Lv~sl 60 (224)
.+|++||.+|+|+||||+|||+||||||+++||+++|+|| +++++||++|+.++++
T Consensus 24 ~~aekql~~A~e~~eKl~KKrsS~~gs~~~ahs~slD~vD~~Il~Ak~aL~evt~~l~Er~~RW~qIE~l~gf 96 (101)
T 3teq_A 24 QNAEKQLMVAKEGAEKIKKKRNTLFGTFHVAHSSSLDDVDHKILTAKQALSEATAALRERLHRWQQIEILTGF 96 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHTCGGGGGTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred ccHHHHHHHHHHHHHHHHHhhhchheeeehhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 4799999999999999999999999999999999999999 5999999999998864
No 4
>3ter_A Mammalian stromal interaction molecule-1; dimer, metal binding protein; 2.55A {Caenorhabditis elegans}
Probab=99.65 E-value=3.6e-18 Score=139.86 Aligned_cols=57 Identities=21% Similarity=0.223 Sum_probs=47.7
Q ss_pred hchHHHHHHHHHHHHHHhcccccccchhhhhcc--cccccCC-----------------CCCCchhHHHHHHHHHH
Q psy11615 5 FMAEKQLQQAREACEKLRKKRSSLVGAFVSTHG--KSIDDVD-----------------RNSTSHVKDYILGTLIL 61 (224)
Q Consensus 5 ~~a~~ql~~a~e~~eki~kKr~s~~gsf~~aH~--~s~D~VD-----------------Rer~~~wKDi~Lv~slv 61 (224)
.+|++||.+|+|+||||+|||+||||||++||| +++|+|| +++++||++|+.++++-
T Consensus 55 ~~Aekql~~Ake~~eKlkKKrsSv~gs~~~aHs~~sslD~vD~~Il~Ak~aL~evt~~l~Er~~RW~qIE~LcgF~ 130 (136)
T 3ter_A 55 QDCFKEMKEAIEMVDRLQKKQGSVLSSLKLATGAASTSDQVDSKIFALKSRMEKIHTLTRETQERWLQIESLCGFP 130 (136)
T ss_dssp HHHHHHHHHHHHHHHHHHHC------CCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred ccHHHHHHHHHHHHHHHHHhhhchheeeeeecCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 479999999999999999999999999999999 9999999 59999999999988753
No 5
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=91.14 E-value=0.082 Score=50.77 Aligned_cols=60 Identities=25% Similarity=0.315 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCC
Q psy11615 116 ASEKIKLERRLQEHQALQGDASDLKSSSAFSDLEVCQLKQEIELLRNELQRAEGELEDRCWAP 178 (224)
Q Consensus 116 ~~EK~~LE~kl~~~~~ak~ea~rl~~~r~~sd~Els~l~eELe~vR~aL~~AE~eLe~~~ws~ 178 (224)
..||..|++++++ +..++.+|.+-..-.+-|..+|++++..+|.++.+|..+|..-.-+|
T Consensus 404 ~~e~~~l~~~~~~---~~~~~~~~~~~~~~~~~e~~~~~~~~~~a~~~~~~~~~~l~~~~~~~ 463 (575)
T 2i1j_A 404 AAERQKLEDEIRA---KQEEVSRIQQEVELKDSETRRLQEEVEDARRKQDEAAAALLAATTPQ 463 (575)
T ss_dssp -----------------------------------------CHHHHHHHHHHHHHHHTTSCCG
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 4445555555555 66667777765566666888888999999999999998887644444
No 6
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=90.25 E-value=6.5 Score=33.44 Aligned_cols=67 Identities=10% Similarity=0.183 Sum_probs=42.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCChhhHHHHhhHHHHHHHHHHHhHhhHHHHHHHHHHHHHhhcc
Q psy11615 147 DLEVCQLKQEIELLRNELQRAEGELEDRCWAPPPGLQHWLQLTHEIENKAYVKKKLMAEKQLQQAREARFDRGK 220 (224)
Q Consensus 147 d~Els~l~eELe~vR~aL~~AE~eLe~~~ws~P~~LQ~wLQlT~EvE~q~y~~Kk~~AekQL~~AkE~~EKikK 220 (224)
+.++.+++.++..++..+.+.+..|.. -+.|-.++. +++|+| +.......++..+..+-+..|.+++
T Consensus 59 ~~~~~~~e~~i~~~~~ri~~~~~~l~~--v~~~kE~~a---L~kEie--~~~~~i~~lE~eile~~e~ie~~~~ 125 (256)
T 3na7_A 59 KLQVSKNEQTLQDTNAKIASIQKKMSE--IKSERELRS---LNIEED--IAKERSNQANREIENLQNEIKRKSE 125 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH--CSSSSHHHH---HHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHc--cCCHHHHHH---HHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446667778888888888888877753 224544443 455555 4556666677776666666655543
No 7
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=86.85 E-value=4.3 Score=41.83 Aligned_cols=77 Identities=23% Similarity=0.364 Sum_probs=40.9
Q ss_pred HHHHHHHhhHhHHHHHHH-------HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhcccccccccccchhHHHHH
Q psy11615 80 HLRRMMKDMEGLQRAELD-------LANLQKELERARQEQENAASEKIKLERRLQEHQALQGDASDLKSSSAFSDLEVCQ 152 (224)
Q Consensus 80 hl~~Mmkdle~Lq~AE~s-------l~dlQ~~Le~aqee~~~v~~EK~~LE~kl~~~~~ak~ea~rl~~~r~~sd~Els~ 152 (224)
.+..|-+|++.|+..+.. ..+|++++++.+++......||..+|++..+. + .+|. ..++.
T Consensus 961 e~~~L~~~l~~le~~~~e~~~~~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~---~---~~L~-------~kv~~ 1027 (1080)
T 2dfs_A 961 ETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKY---K---HETE-------QLVSE 1027 (1080)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H---HHHH-------HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H---HHHH-------HHHHH
Confidence 344454555554443333 44556666666666666666666666655441 1 1111 24555
Q ss_pred HHHHHHHHHHHHHHHHh
Q psy11615 153 LKQEIELLRNELQRAEG 169 (224)
Q Consensus 153 l~eELe~vR~aL~~AE~ 169 (224)
|+.|...+|.++...|.
T Consensus 1028 L~~e~~~L~qq~~~l~~ 1044 (1080)
T 2dfs_A 1028 LKEQNTLLKTEKEELNR 1044 (1080)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 66666666666665553
No 8
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=86.76 E-value=10 Score=31.83 Aligned_cols=88 Identities=16% Similarity=0.259 Sum_probs=56.5
Q ss_pred hHHHHHHHHHhhH-hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh-hhhcccccccccccchhHHHHHHH
Q psy11615 77 SQQHLRRMMKDME-GLQRAELDLANLQKELERARQEQENAASEKIKLERRLQEHQ-ALQGDASDLKSSSAFSDLEVCQLK 154 (224)
Q Consensus 77 Sk~hl~~Mmkdle-~Lq~AE~sl~dlQ~~Le~aqee~~~v~~EK~~LE~kl~~~~-~ak~ea~rl~~~r~~sd~Els~l~ 154 (224)
+-.-+++...+|. .++.+|..+.|||.++-.++...-....+..+|.-.|..|- +...-.++..++ ++-++-|.
T Consensus 28 ~~~rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se~~~el----q~ri~~L~ 103 (168)
T 3o0z_A 28 TAVRLRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDL----QARITSLQ 103 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHH
Confidence 3445666777776 67888999999999998888766666666666665555432 111112212221 22344578
Q ss_pred HHHHHHHHHHHHHH
Q psy11615 155 QEIELLRNELQRAE 168 (224)
Q Consensus 155 eELe~vR~aL~~AE 168 (224)
+||+.+|..+.+++
T Consensus 104 ~El~~~k~~~~k~~ 117 (168)
T 3o0z_A 104 EEVKHLKHNLEKVE 117 (168)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 89999999888886
No 9
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=83.75 E-value=6 Score=40.81 Aligned_cols=82 Identities=22% Similarity=0.300 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh-hhhcccccccc---cccchhHHHHHHHHHHHHHHHHHHHH
Q psy11615 92 QRAELDLANLQKELERARQEQENAASEKIKLERRLQEHQ-ALQGDASDLKS---SSAFSDLEVCQLKQEIELLRNELQRA 167 (224)
Q Consensus 92 q~AE~sl~dlQ~~Le~aqee~~~v~~EK~~LE~kl~~~~-~ak~ea~rl~~---~r~~sd~Els~l~eELe~vR~aL~~A 167 (224)
...|..+.+||.+|+...+++..-..++.+++.++.+++ ..+.+-..+.. --..++..+..|++|++.++.++.++
T Consensus 924 ~~LE~kl~eLq~rL~~~e~~n~~L~~~~~~~~~~~~~e~~~L~~~l~~le~~~~e~~~~~~~v~~L~~e~~~l~~~~~~~ 1003 (1080)
T 2dfs_A 924 IGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQT 1003 (1080)
T ss_dssp ---------------------------CHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344666788888888877777766666665555554442 12111111111 00123456677788888888888888
Q ss_pred Hhhhhh
Q psy11615 168 EGELED 173 (224)
Q Consensus 168 E~eLe~ 173 (224)
.++.+.
T Consensus 1004 ~ke~~~ 1009 (1080)
T 2dfs_A 1004 QTEKKT 1009 (1080)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 776654
No 10
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=83.31 E-value=15 Score=28.97 Aligned_cols=52 Identities=19% Similarity=0.172 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHhhhhhcCCCCChhhHHHHhhHHHHHHHHHHHhHhhHHHHHH
Q psy11615 154 KQEIELLRNELQRAEGELEDRCWAPPPGLQHWLQLTHEIENKAYVKKKLMAEKQLQ 209 (224)
Q Consensus 154 ~eELe~vR~aL~~AE~eLe~~~ws~P~~LQ~wLQlT~EvE~q~y~~Kk~~AekQL~ 209 (224)
+.+|...|..|+.|++..+-. |+.+++=-=-.-..+|..|..|=..-.+||.
T Consensus 48 E~QL~iArQKLkdAe~~~E~D----PDevNK~tl~~R~~~Vsalq~KiaeLKrqLA 99 (107)
T 2k48_A 48 EQQLVTARQKLKDAEKAVEVD----PDDVNKSTLQNRRAAVSTLETKLGELKRQLA 99 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCC----CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555544432 4444433222233344444444333333333
No 11
>4dci_A Uncharacterized protein; PSI-biology, midwest center for structural genomics, MCSG, S genomics, unknown function; 2.82A {Synechococcus SP}
Probab=80.96 E-value=17 Score=29.76 Aligned_cols=64 Identities=17% Similarity=0.148 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhcCCCC--ChhhHH--HHhhHHHHHHHHHHHhHhhHHHHHHHHH
Q psy11615 149 EVCQLKQEIELLRNELQRAEGELEDRCWAP--PPGLQH--WLQLTHEIENKAYVKKKLMAEKQLQQAR 212 (224)
Q Consensus 149 Els~l~eELe~vR~aL~~AE~eLe~~~ws~--P~~LQ~--wLQlT~EvE~q~y~~Kk~~AekQL~~Ak 212 (224)
.+++++.||.|+...++++..+....+-.| |.+.++ -++-.++-|-.-.--+|.....|+.+..
T Consensus 37 ~i~q~d~elqQLefq~kr~~~e~~~q~~~~~~p~~~~qi~~iq~q~~~ek~~r~e~k~~l~~ql~qv~ 104 (150)
T 4dci_A 37 GIANADQQLAQLEQEGQTVVDQVRRQSANPLDPRVQEQVANIQQQVAGKRSELEEQKRNLLQQQAQVR 104 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 566678899999999999999887654333 333333 4777888888887777777777777654
No 12
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=80.38 E-value=2.9 Score=35.95 Aligned_cols=30 Identities=20% Similarity=0.210 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcCCCCC
Q psy11615 150 VCQLKQEIELLRNELQRAEGELEDRCWAPP 179 (224)
Q Consensus 150 ls~l~eELe~vR~aL~~AE~eLe~~~ws~P 179 (224)
+..++.++.+.+.+|..|+..|+...-.+|
T Consensus 131 ~~~~~~~l~~~~~~l~~a~~~l~~~~i~AP 160 (369)
T 4dk0_A 131 MDVVQENIKQAEIEVNTAETNLGYTKITSP 160 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCSSCCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCEEECC
Confidence 333455566666666666666655444444
No 13
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=79.92 E-value=4 Score=31.61 Aligned_cols=32 Identities=16% Similarity=0.419 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy11615 97 DLANLQKELERARQEQENAASEKIKLERRLQE 128 (224)
Q Consensus 97 sl~dlQ~~Le~aqee~~~v~~EK~~LE~kl~~ 128 (224)
.+..|+.+|.+.+.-...+..+|..++.+|.+
T Consensus 27 e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEe 58 (97)
T 2eqb_B 27 EVKRLREDIAKENELRTKAEEEADKLNKEVED 58 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444
No 14
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=78.88 E-value=25 Score=32.13 Aligned_cols=26 Identities=23% Similarity=0.395 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhc
Q psy11615 149 EVCQLKQEIELLRNELQRAEGELEDR 174 (224)
Q Consensus 149 Els~l~eELe~vR~aL~~AE~eLe~~ 174 (224)
.+.++++|+...+.+++.-+..+.++
T Consensus 559 ~~~~l~~e~~~~~~~~~~l~~~~~~~ 584 (597)
T 3oja_B 559 KQAELRQETSLKRQKVKQLEAKKNRN 584 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 34456789999999999999888765
No 15
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=78.15 E-value=51 Score=38.22 Aligned_cols=31 Identities=16% Similarity=0.272 Sum_probs=18.0
Q ss_pred HHHHHHHHHhhHhHHHHHHHHHHHHHHHHHH
Q psy11615 78 QQHLRRMMKDMEGLQRAELDLANLQKELERA 108 (224)
Q Consensus 78 k~hl~~Mmkdle~Lq~AE~sl~dlQ~~Le~a 108 (224)
.....++-.=|+-|..|.....+||++|+..
T Consensus 1916 ~~~~~rl~~GL~KL~et~~~V~~l~~~L~~~ 1946 (3245)
T 3vkg_A 1916 EEEQLHLNIGLKKLRDTEAQVKDLQVSLAQK 1946 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666666666655555555443
No 16
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=76.65 E-value=11 Score=38.61 Aligned_cols=11 Identities=27% Similarity=0.522 Sum_probs=5.6
Q ss_pred HHHHHHHHhcc
Q psy11615 14 AREACEKLRKK 24 (224)
Q Consensus 14 a~e~~eki~kK 24 (224)
.+++|+.|=+.
T Consensus 748 ~k~~~~~lL~~ 758 (1184)
T 1i84_S 748 GKQACILMIKA 758 (1184)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHH
Confidence 34556655443
No 17
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=76.11 E-value=9.7 Score=30.94 Aligned_cols=32 Identities=16% Similarity=0.419 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy11615 97 DLANLQKELERARQEQENAASEKIKLERRLQE 128 (224)
Q Consensus 97 sl~dlQ~~Le~aqee~~~v~~EK~~LE~kl~~ 128 (224)
.+..|+.+|.+.+.-...+..+|..++.++.+
T Consensus 47 e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~ 78 (135)
T 2e7s_A 47 EVKRLREDIAKENELRTKAEEEADKLNKEVED 78 (135)
T ss_dssp HHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555555554
No 18
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=73.42 E-value=30 Score=26.82 Aligned_cols=43 Identities=23% Similarity=0.347 Sum_probs=26.0
Q ss_pred HhhHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy11615 86 KDMEGLQRAELDLANLQKELERARQEQENAASEKIKLERRLQE 128 (224)
Q Consensus 86 kdle~Lq~AE~sl~dlQ~~Le~aqee~~~v~~EK~~LE~kl~~ 128 (224)
++-+.|+.+...+.++...++..+-+-.+....|..||..+.|
T Consensus 28 ~~~~~l~~~k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e 70 (131)
T 3tnu_A 28 TNSELVQSGKSEISELRRTMQNLEIELQSQLSMKASLENSLEE 70 (131)
T ss_dssp -------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 3456677777888888888888888888888889999998887
No 19
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=73.03 E-value=3.4 Score=35.21 Aligned_cols=24 Identities=21% Similarity=0.307 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHH
Q psy11615 91 LQRAELDLANLQKELERARQEQEN 114 (224)
Q Consensus 91 Lq~AE~sl~dlQ~~Le~aqee~~~ 114 (224)
|..|+..|..++..++.++.+...
T Consensus 71 ~~~~~a~l~~~~a~l~~a~~~~~~ 94 (341)
T 3fpp_A 71 IKEVEATLMELRAQRQQAEAELKL 94 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666666554433
No 20
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=71.93 E-value=32 Score=26.52 Aligned_cols=43 Identities=14% Similarity=0.388 Sum_probs=30.3
Q ss_pred HhhHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy11615 86 KDMEGLQRAELDLANLQKELERARQEQENAASEKIKLERRLQE 128 (224)
Q Consensus 86 kdle~Lq~AE~sl~dlQ~~Le~aqee~~~v~~EK~~LE~kl~~ 128 (224)
++-+.|+.+...+.++...++..+-+-.+....+..||..+.|
T Consensus 26 ~~~~~l~~~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e 68 (129)
T 3tnu_B 26 RHGDDLRNTKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIAD 68 (129)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 3446677777888888888888888888888889999999987
No 21
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=71.85 E-value=32 Score=27.01 Aligned_cols=85 Identities=22% Similarity=0.264 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhcccccccccccchhHHHHHH-------HHHHHHHHHHHHHHHhhhhh
Q psy11615 101 LQKELERARQEQENAASEKIKLERRLQEHQALQGDASDLKSSSAFSDLEVCQL-------KQEIELLRNELQRAEGELED 173 (224)
Q Consensus 101 lQ~~Le~aqee~~~v~~EK~~LE~kl~~~~~ak~ea~rl~~~r~~sd~Els~l-------~eELe~vR~aL~~AE~eLe~ 173 (224)
||..+..+++.-.....++..||..+.. .++-.-.+|+.| +..|..+|.++..+-.....
T Consensus 11 lq~~~~ql~~qL~k~~~~r~~Le~~w~~-------------k~E~~k~qV~~L~~~~q~sE~~L~~Lqq~fsq~q~~vq~ 77 (112)
T 1x79_B 11 LQLMLRQANDQLEKTMKDKQELEDFIKQ-------------SSEDSSHQISALVLRAQASEILLEELQQGLSQAKRDVQE 77 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555566677788877766 222222344443 57788888888887776654
Q ss_pred cCCCCChhhHHHHhhHHHHHHHHHHHhHhhHHHHH
Q psy11615 174 RCWAPPPGLQHWLQLTHEIENKAYVKKKLMAEKQL 208 (224)
Q Consensus 174 ~~ws~P~~LQ~wLQlT~EvE~q~y~~Kk~~AekQL 208 (224)
+.=+||+.-|--+|...|...+-.-
T Consensus 78 ----------qL~~Lt~~Re~V~~eL~rLQ~eNd~ 102 (112)
T 1x79_B 78 ----------QMAVLMQSREQVSEELVRLQKDNDS 102 (112)
T ss_dssp ----------HHHHHHHHHHHHHTC----------
T ss_pred ----------HHHHHHHHHHHHHHHHHHHHhhccc
Confidence 3446777777777777666665443
No 22
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=71.58 E-value=11 Score=36.80 Aligned_cols=119 Identities=17% Similarity=0.268 Sum_probs=75.2
Q ss_pred hhhhhchHHHHHHHHHhhHhHHHHHHH--------HHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHhhhhcccccccc
Q psy11615 71 YRQKESSQQHLRRMMKDMEGLQRAELD--------LANLQKELERARQEQENAASEKI-KLERRLQEHQALQGDASDLKS 141 (224)
Q Consensus 71 y~Qnr~Sk~hl~~Mmkdle~Lq~AE~s--------l~dlQ~~Le~aqee~~~v~~EK~-~LE~kl~~~~~ak~ea~rl~~ 141 (224)
..|++..+.-|++|=.-++.|++--.+ .+.|++++..+. ++.++..|=- +||+++..
T Consensus 56 dkqErDltkrINELKnqLEdlsKnsKdseqy~k~~~E~Lr~rq~q~~-dNdNtynE~S~ELRRrIqy------------- 121 (562)
T 3ghg_A 56 DEVNQDFTNRINKLKNSLFEYQKNNKDSHSLTTNIMEILRGDFSSAN-NRDNTYNRVSEDLRSRIEV------------- 121 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTSSHHHHHH-HHHHHHHHTTHHHHHHHHH-------------
T ss_pred HhhcCcHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhh-ccchhHHHHHHHHHHHHHH-------------
Confidence 478999999999999989888654433 233444555555 5555555544 56666554
Q ss_pred cccchhHHHHH---HHHHHHHHHHHHHHHHhhhhhc---CCCCChhhHHHHhhHHHHHHHHHHHhHhhHHHHHHHHH
Q psy11615 142 SSAFSDLEVCQ---LKQEIELLRNELQRAEGELEDR---CWAPPPGLQHWLQLTHEIENKAYVKKKLMAEKQLQQAR 212 (224)
Q Consensus 142 ~r~~sd~Els~---l~eELe~vR~aL~~AE~eLe~~---~ws~P~~LQ~wLQlT~EvE~q~y~~Kk~~AekQL~~Ak 212 (224)
+...-+..+++ |+.=|+.+|..+++-|...... |-.|=.. -+.|+|.++.|+- -+|||.++.
T Consensus 122 LKekVdnQlsnIrvLQsnLedq~~kIQRLEvDIdiqirsCKgsCsr-----~~~~~vd~~sY~~----~QKQLeQv~ 189 (562)
T 3ghg_A 122 LKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIKIRSCRGSCSR-----ALAREVDLKDYED----QQKQLEQVI 189 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTBSC-----CCCCCCCHHHHHH----HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc-----hheeecchHHHHH----HHHHHHHHh
Confidence 22223334444 4678888888888888766422 4333221 2578999999974 467887763
No 23
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=71.35 E-value=30 Score=30.92 Aligned_cols=81 Identities=16% Similarity=0.229 Sum_probs=41.1
Q ss_pred chHHHHHHHHHhhHhH-------HHHHHHHHHHHHHHHHHHH-----------HhHHHHHHHHHHHHHHHHHhhhhcccc
Q psy11615 76 SSQQHLRRMMKDMEGL-------QRAELDLANLQKELERARQ-----------EQENAASEKIKLERRLQEHQALQGDAS 137 (224)
Q Consensus 76 ~Sk~hl~~Mmkdle~L-------q~AE~sl~dlQ~~Le~aqe-----------e~~~v~~EK~~LE~kl~~~~~ak~ea~ 137 (224)
....=+..+.+.++.+ ..++.--..||++|.++|. -+++|.+--..||++.-. .++
T Consensus 370 t~eeal~~~~~~i~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~- 443 (471)
T 3mq9_A 370 TVDEALKDAQTRITAARDGLRAVMEARNVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQ-----GQK- 443 (471)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHH-
T ss_pred CHHHHHHHHHHHHHHHHHhhHHHHHhhhHHHHHHHHHHHHhhhHHHHHHHhhhcchhHHHHHHHHHHHHHH-----HHH-
Confidence 4555555555555443 2222333445555555443 245666655566655533 111
Q ss_pred cccccccchhHHHHHHHHHHHHHHHHHHH
Q psy11615 138 DLKSSSAFSDLEVCQLKQEIELLRNELQR 166 (224)
Q Consensus 138 rl~~~r~~sd~Els~l~eELe~vR~aL~~ 166 (224)
|..++ |+|+..|+.+|+..|.+.++
T Consensus 444 ~~~~~----~~~~~~~~~~~~~~~~~~~~ 468 (471)
T 3mq9_A 444 KVEEL----EGEITTLNHKLQDASAEVER 468 (471)
T ss_dssp HHHHH----HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH----HHHHHHHHHHHHHHHHHHHH
Confidence 33332 55666677777776666544
No 24
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=68.62 E-value=26 Score=26.94 Aligned_cols=31 Identities=35% Similarity=0.408 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy11615 98 LANLQKELERARQEQENAASEKIKLERRLQE 128 (224)
Q Consensus 98 l~dlQ~~Le~aqee~~~v~~EK~~LE~kl~~ 128 (224)
..|.++.|..++..+..+..+|.+|+.+|..
T Consensus 10 ~aE~~KqL~~~~q~~~e~e~~k~eL~~~~~~ 40 (107)
T 2no2_A 10 NAEVTKQVSMARQAQVDLEREKKELEDSLER 40 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578899999999999999999999999988
No 25
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=67.73 E-value=27 Score=28.82 Aligned_cols=89 Identities=15% Similarity=0.271 Sum_probs=54.1
Q ss_pred HHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhh-hhcccccccccccchhHHHHHHHHHH
Q psy11615 79 QHLRRMMKDMEGLQRAELDLANLQKELERARQEQENAASEKIKLERRLQEHQA-LQGDASDLKSSSAFSDLEVCQLKQEI 157 (224)
Q Consensus 79 ~hl~~Mmkdle~Lq~AE~sl~dlQ~~Le~aqee~~~v~~EK~~LE~kl~~~~~-ak~ea~rl~~~r~~sd~Els~l~eEL 157 (224)
.++.++-.+ +..-+..+..|+.+|.+.+.-...+..+|..++.++.|..+ -=.||..+=. .+--+--.++...
T Consensus 44 ~~~~~l~~~---~~~~~~e~~~L~~~l~~E~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa---~ar~~~~~~e~r~ 117 (154)
T 2ocy_A 44 EDYNTLKRE---LSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNMVA---DARKEKYAIEILN 117 (154)
T ss_dssp HHHHHHHTH---HHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
T ss_pred HHHHHHHHH---HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 344444333 34456677778888888888888888888888888887542 2333332211 1111222245667
Q ss_pred HHHHHHHHHHHhhhhh
Q psy11615 158 ELLRNELQRAEGELED 173 (224)
Q Consensus 158 e~vR~aL~~AE~eLe~ 173 (224)
++++..|..++..|+.
T Consensus 118 ~~L~~ql~e~~~~l~~ 133 (154)
T 2ocy_A 118 KRLTEQLREKDTLLDT 133 (154)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7777777777776664
No 26
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=66.77 E-value=26 Score=27.89 Aligned_cols=27 Identities=33% Similarity=0.479 Sum_probs=15.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy11615 147 DLEVCQLKQEIELLRNELQRAEGELED 173 (224)
Q Consensus 147 d~Els~l~eELe~vR~aL~~AE~eLe~ 173 (224)
..++..|++++..+...+.+.|.+|++
T Consensus 109 ~~e~~~l~~~~~~l~~~~~~le~~~~~ 135 (138)
T 3hnw_A 109 AKEIKELKSEINKYQKNIVKLETELND 135 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 335555556666666666666666654
No 27
>3tul_A Cell invasion protein SIPB; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.79A {Salmonella enterica subsp}
Probab=66.56 E-value=23 Score=29.52 Aligned_cols=55 Identities=20% Similarity=0.190 Sum_probs=32.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHHHHHHHHHHHHh
Q psy11615 90 GLQRAELDLANLQKELERARQEQENAASEKIKLERRLQEHQALQGDASDLKSSSAFSDLEVCQLKQEIELLRNELQRAEG 169 (224)
Q Consensus 90 ~Lq~AE~sl~dlQ~~Le~aqee~~~v~~EK~~LE~kl~~~~~ak~ea~rl~~~r~~sd~Els~l~eELe~vR~aL~~AE~ 169 (224)
++..|...+.+++++++.++. +|..+.+++. +--+++.+++|+|..+-.+-+
T Consensus 70 n~~sA~~~~d~lekKl~~aq~---------------------------kL~~L~P~~P-~Yak~~a~~~q~~~d~~~~~~ 121 (158)
T 3tul_A 70 KTDTAKSVYDAATKKLTQAQN---------------------------KLQSLDPADP-GYAQAEAAVEQAGKEATEAKE 121 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---------------------------HHTTC--------CHHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHH---------------------------HHhcCCCCCc-chHHHHHHHHHHHHHHHHHHH
Confidence 566666666777776666543 3333545444 455567888999988877766
Q ss_pred hhh
Q psy11615 170 ELE 172 (224)
Q Consensus 170 eLe 172 (224)
-++
T Consensus 122 ~~~ 124 (158)
T 3tul_A 122 ALD 124 (158)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 28
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=63.37 E-value=23 Score=34.20 Aligned_cols=75 Identities=21% Similarity=0.232 Sum_probs=41.0
Q ss_pred HhhHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHH-----------hh--hhcccccccccccchhHHHH
Q psy11615 86 KDMEGLQRAELDLANLQKELERARQEQENAASEKI-KLERRLQEH-----------QA--LQGDASDLKSSSAFSDLEVC 151 (224)
Q Consensus 86 kdle~Lq~AE~sl~dlQ~~Le~aqee~~~v~~EK~-~LE~kl~~~-----------~~--ak~ea~rl~~~r~~sd~Els 151 (224)
.+=+..+++...|.+.|++++..-+.++.+-.|-. .|++||..+ +. .+..+.. +++|-..+..
T Consensus 494 ~~~e~~~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~ql~~kme~~~~~~~~e~~~~~~~~~~~~~~~---~~~g~~~~~~ 570 (592)
T 1f5n_A 494 VKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQEQEQL---LKEGFQKESR 570 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHTCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence 34455566666677777777766665555533322 233344332 11 1222222 3345666777
Q ss_pred HHHHHHHHHHHH
Q psy11615 152 QLKQEIELLRNE 163 (224)
Q Consensus 152 ~l~eELe~vR~a 163 (224)
.|..|+..++..
T Consensus 571 ~~~~ei~~l~~~ 582 (592)
T 1f5n_A 571 IMKNEIQDLQTK 582 (592)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 788888888776
No 29
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=62.65 E-value=25 Score=26.40 Aligned_cols=13 Identities=46% Similarity=0.705 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHH
Q psy11615 149 EVCQLKQEIELLR 161 (224)
Q Consensus 149 Els~l~eELe~vR 161 (224)
|+.+|+.+++.+|
T Consensus 60 e~~~l~~~~eelq 72 (81)
T 1wt6_A 60 HVRQLQERMELLQ 72 (81)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4445555555544
No 30
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=61.74 E-value=28 Score=29.49 Aligned_cols=51 Identities=27% Similarity=0.418 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHH
Q psy11615 93 RAELDLANLQKELERARQEQENAASEKIKLERRLQEHQALQGDASDLKSSSAFSDLEVCQLKQEI 157 (224)
Q Consensus 93 ~AE~sl~dlQ~~Le~aqee~~~v~~EK~~LE~kl~~~~~ak~ea~rl~~~r~~sd~Els~l~eEL 157 (224)
-+..||.|++.+|..|=+.+-- ||-++.+-...+.+.+||++ |++.|++||
T Consensus 127 ~~~~SleD~e~kln~aiEr~al-------LE~El~EKe~l~~~~QRLkd-------E~rDLk~El 177 (189)
T 2v71_A 127 ATIMSLEDFEQRLNQAIERNAF-------LESELDEKESLLVSVQRLKD-------EARDLRQEL 177 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHCCC---------------------
T ss_pred HHHhhHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHH
Confidence 3456788888888887764333 34444442345666667766 445555555
No 31
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=60.98 E-value=67 Score=26.83 Aligned_cols=61 Identities=21% Similarity=0.213 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHHH
Q psy11615 96 LDLANLQKELERARQEQENAASEKIKLERRLQEHQALQGDASDLKSSSAFSDLEVCQLKQEIEL 159 (224)
Q Consensus 96 ~sl~dlQ~~Le~aqee~~~v~~EK~~LE~kl~~~~~ak~ea~rl~~~r~~sd~Els~l~eELe~ 159 (224)
+.+..||..|+.-+....-...-...|+-++.. ...|..++++...-..++..+|-+-|-.
T Consensus 69 ke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~---L~~El~~~k~~~~k~~~e~r~L~Ekl~~ 129 (168)
T 3o0z_A 69 KDYYQLQAILEAERRDRGHDSEMIGDLQARITS---LQEEVKHLKHNLEKVEGERKEAQDMLNH 129 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666555444444444445544443 4444444444333334444444333333
No 32
>1uix_A RHO-associated kinase; coiled-coil, transferase; HET: MSE; 1.80A {Bos taurus} SCOP: h.1.27.1
Probab=60.17 E-value=47 Score=24.25 Aligned_cols=49 Identities=24% Similarity=0.405 Sum_probs=31.7
Q ss_pred HHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Q psy11615 79 QHLRRMMKDMEGLQRAELDLANLQKELERARQEQENAASEKIKLERRLQEHQ 130 (224)
Q Consensus 79 ~hl~~Mmkdle~Lq~AE~sl~dlQ~~Le~aqee~~~v~~EK~~LE~kl~~~~ 130 (224)
..|..+.+..+.|-. .+...|+++..+.++..+....|..||.++..|.
T Consensus 4 k~v~~l~~E~eel~~---klk~~~ee~~~~~eee~~~~~~k~~lek~L~~E~ 52 (71)
T 1uix_A 4 SDVANLANEKEELNN---KLKEAQEQLSRLKDEEISAAAIKAQFEKQLLTER 52 (71)
T ss_dssp HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444422 3555666777777777788888889999998754
No 33
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=55.72 E-value=1.2e+02 Score=27.55 Aligned_cols=31 Identities=16% Similarity=0.213 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy11615 98 LANLQKELERARQEQENAASEKIKLERRLQE 128 (224)
Q Consensus 98 l~dlQ~~Le~aqee~~~v~~EK~~LE~kl~~ 128 (224)
+.++..++...+++........+..++++.+
T Consensus 458 ~~~~~~~i~~l~~~~~~~~~~l~~~~~~i~~ 488 (597)
T 3oja_B 458 VNELRAEVQQLTNEQIQQEQLLQGLHAEIDT 488 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4444445555555444444444444444444
No 34
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=55.58 E-value=69 Score=25.36 Aligned_cols=61 Identities=18% Similarity=0.162 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhcCCCCChhhHHHHhhHHHHHHHHHHHhHhhHHHHHHHHHH
Q psy11615 149 EVCQLKQEIELLRNELQRAEGELEDRCWAPPPGLQHWLQLTHEIENKAYVKKKLMAEKQLQQARE 213 (224)
Q Consensus 149 Els~l~eELe~vR~aL~~AE~eLe~~~ws~P~~LQ~wLQlT~EvE~q~y~~Kk~~AekQL~~AkE 213 (224)
|+.+.+.+|...|.-|+.|++..+-. |+.+++=-=-.-..+|..|..|=..-.+||..+..
T Consensus 30 Ei~~~E~QL~~ArQKLkdA~~~~e~D----PDevNK~tl~~R~~~Vs~lq~KiaeLKrqLAd~va 90 (113)
T 4fi5_A 30 EINAHEGQLVIARQKVRDAEKQYEKD----PDELNKRTLTDREGVAVSIQAKIDELKRQLADRIA 90 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCC----CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66677899999999999999999854 88887755555567788888887777777776655
No 35
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=54.94 E-value=70 Score=24.60 Aligned_cols=12 Identities=33% Similarity=0.426 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHH
Q psy11615 204 AEKQLQQAREAR 215 (224)
Q Consensus 204 AekQL~~AkE~~ 215 (224)
+...+..++...
T Consensus 144 ~~~~l~~~~~~~ 155 (284)
T 1c1g_A 144 QEIQLKEAKHIA 155 (284)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333344444333
No 36
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=53.12 E-value=18 Score=24.30 Aligned_cols=36 Identities=8% Similarity=0.320 Sum_probs=25.5
Q ss_pred ccCCCCCCchhHHHHHHHHHHHHHHHHHHhhhhhhc
Q psy11615 41 DDVDRNSTSHVKDYILGTLILIALTICWYVYRQKES 76 (224)
Q Consensus 41 D~VDRer~~~wKDi~Lv~slviavgGcWfAy~Qnr~ 76 (224)
++-++++++...-.+..+++++-++++||.|.=+|+
T Consensus 4 ~~~~~~~~~~Ia~~vVGvll~vi~~l~~~~~~RRR~ 39 (44)
T 2jwa_A 4 AEQRASPLTSIISAVVGILLVVVLGVVFGILIKRRQ 39 (44)
T ss_dssp CCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCcccchHHHHHHHHHHHHHHHHHHhheehhh
Confidence 334456666677777777788888888888876554
No 37
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=52.68 E-value=83 Score=26.53 Aligned_cols=37 Identities=22% Similarity=0.151 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy11615 92 QRAELDLANLQKELERARQEQENAASEKIKLERRLQE 128 (224)
Q Consensus 92 q~AE~sl~dlQ~~Le~aqee~~~v~~EK~~LE~kl~~ 128 (224)
...+..+..+..++..++.+-.....+...+|..+.+
T Consensus 35 ~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~ 71 (256)
T 3na7_A 35 DKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQD 71 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455556666666666666666666666655555
No 38
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=51.38 E-value=68 Score=23.41 Aligned_cols=37 Identities=14% Similarity=0.135 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy11615 93 RAELDLANLQKELERARQEQENAASEKIKLERRLQEH 129 (224)
Q Consensus 93 ~AE~sl~dlQ~~Le~aqee~~~v~~EK~~LE~kl~~~ 129 (224)
..+..+.++..+|.+.+........+...+++.+...
T Consensus 7 ~~~~~~~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~l 43 (112)
T 1l8d_A 7 ELETKKTTIEEERNEITQRIGELKNKIGDLKTAIEEL 43 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444677778888888888888888888888888763
No 39
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=49.04 E-value=88 Score=24.02 Aligned_cols=16 Identities=13% Similarity=-0.024 Sum_probs=6.6
Q ss_pred hhHHHHHHHHHHHHHh
Q psy11615 202 LMAEKQLQQAREARFD 217 (224)
Q Consensus 202 ~~AekQL~~AkE~~EK 217 (224)
..+...+..+....+.
T Consensus 149 ~~~~~~~~~~~~~~~~ 164 (284)
T 1c1g_A 149 KEAKHIAEDADRKYEE 164 (284)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444433
No 40
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=49.02 E-value=29 Score=33.17 Aligned_cols=57 Identities=23% Similarity=0.308 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHH-------HHHHHHHHHHHHHhhhhcccccccccccchhHHHHHH
Q psy11615 94 AELDLANLQKELERARQEQENAA-------SEKIKLERRLQEHQALQGDASDLKSSSAFSDLEVCQL 153 (224)
Q Consensus 94 AE~sl~dlQ~~Le~aqee~~~v~-------~EK~~LE~kl~~~~~ak~ea~rl~~~r~~sd~Els~l 153 (224)
||....+|+.+|...+++.+... .-..-|+++++. ++.+|..|...+..++.+.++|
T Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~e~~~~---~~~e~~~l~~~~~~~e~~~~~l 396 (575)
T 2i1j_A 333 AEKKQQEYQDRLRQMQEEMERSQANLLEAQDMILRLEEQLRQ---LQAAKEELEQRQNELQAMMQRL 396 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----------------------------------
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555444433 223334444444 6666666666555555555554
No 41
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=48.84 E-value=75 Score=23.12 Aligned_cols=25 Identities=12% Similarity=0.311 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhh
Q psy11615 149 EVCQLKQEIELLRNELQRAEGELED 173 (224)
Q Consensus 149 Els~l~eELe~vR~aL~~AE~eLe~ 173 (224)
++..|+..+..++..+...+..|..
T Consensus 85 ~i~~le~~~~~l~~~l~~lk~~l~~ 109 (117)
T 2zqm_A 85 RLNALERQEKKLNEKLKELTAQIQS 109 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555555543
No 42
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=47.43 E-value=85 Score=23.33 Aligned_cols=61 Identities=16% Similarity=0.129 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhcCCCCChhhHHHHhhHHHHHHHHHHHhHhhHHHHHHHHHH
Q psy11615 149 EVCQLKQEIELLRNELQRAEGELEDRCWAPPPGLQHWLQLTHEIENKAYVKKKLMAEKQLQQARE 213 (224)
Q Consensus 149 Els~l~eELe~vR~aL~~AE~eLe~~~ws~P~~LQ~wLQlT~EvE~q~y~~Kk~~AekQL~~AkE 213 (224)
|+...+.+|..-|.-|+.|++..+-. |+.+++=-=---..+|..|.-|=..-.++|..+..
T Consensus 13 e~~~~E~QL~~A~QKLkdA~~~~e~D----PDevNK~~~~~R~~~V~~lq~Ki~elkrqlAd~va 73 (78)
T 2ic6_A 13 NITLHEQRLVTTRQKLKDAERAVELD----PDDVNKSTLQSRRAAVSALETKLGELKRELADLIA 73 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCC----CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 66667899999999999999999854 88887655555566778888777666677766543
No 43
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=47.07 E-value=48 Score=24.90 Aligned_cols=28 Identities=25% Similarity=0.373 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy11615 101 LQKELERARQEQENAASEKIKLERRLQE 128 (224)
Q Consensus 101 lQ~~Le~aqee~~~v~~EK~~LE~kl~~ 128 (224)
|=.++...+..-.....|+..-|++|+.
T Consensus 24 L~qEi~~Lr~kv~elEnErlQyEkKLKs 51 (81)
T 3qh9_A 24 LLQELRHLKIKVEELENERNQYEWKLKA 51 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3335555555555567788888888887
No 44
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=45.60 E-value=33 Score=22.87 Aligned_cols=19 Identities=26% Similarity=0.565 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHhhhhhhc
Q psy11615 58 TLILIALTICWYVYRQKES 76 (224)
Q Consensus 58 ~slviavgGcWfAy~Qnr~ 76 (224)
++++..++++||.|.=+|+
T Consensus 20 v~~v~ii~~~~~~~~RRRr 38 (44)
T 2l2t_A 20 LFILVIVGLTFAVYVRRKS 38 (44)
T ss_dssp HHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhhhhh
Confidence 6666677788888765543
No 45
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=45.55 E-value=65 Score=23.48 Aligned_cols=24 Identities=29% Similarity=0.480 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHH
Q psy11615 95 ELDLANLQKELERARQEQENAASE 118 (224)
Q Consensus 95 E~sl~dlQ~~Le~aqee~~~v~~E 118 (224)
|.-+.+++.+|+.++.++.....|
T Consensus 20 e~~v~~le~~Le~s~~~q~~~~~E 43 (72)
T 3cve_A 20 EGQLSEMEQRLEKSQSEQDAFRSN 43 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444333
No 46
>4aj5_K Spindle and kinetochore-associated protein 2; cell cycle, SKA complex, mitosis, cell division, kinetochore microtubule attachment; 3.32A {Homo sapiens}
Probab=44.95 E-value=18 Score=29.12 Aligned_cols=31 Identities=32% Similarity=0.420 Sum_probs=25.9
Q ss_pred HHHHHHHhhHhH-HHHHHHHHHHHHHHHHHHH
Q psy11615 80 HLRRMMKDMEGL-QRAELDLANLQKELERARQ 110 (224)
Q Consensus 80 hl~~Mmkdle~L-q~AE~sl~dlQ~~Le~aqe 110 (224)
||..-..+|+.+ |+|+.+|..+|.||+--..
T Consensus 2 ~me~avdkLe~mFqKA~sDLdyiq~RLe~Ef~ 33 (123)
T 4aj5_K 2 HMEAEVDKLELMFQKAESDLDYIQYRLEYEIK 33 (123)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 677778888888 9999999999999997544
No 47
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=44.61 E-value=1.1e+02 Score=23.65 Aligned_cols=61 Identities=16% Similarity=0.129 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhcCCCCChhhHHHHhhHHHHHHHHHHHhHhhHHHHHHHHHH
Q psy11615 149 EVCQLKQEIELLRNELQRAEGELEDRCWAPPPGLQHWLQLTHEIENKAYVKKKLMAEKQLQQARE 213 (224)
Q Consensus 149 Els~l~eELe~vR~aL~~AE~eLe~~~ws~P~~LQ~wLQlT~EvE~q~y~~Kk~~AekQL~~AkE 213 (224)
|+.+.+.+|...|.-|+.|++..+-. |+.+++=-=-.-..+|..|.-|=..-.++|..+..
T Consensus 13 e~~~~E~QL~~A~QKLkdA~~~~e~D----PDevNk~~~~~R~~~V~~lq~Ki~elkr~lAd~v~ 73 (96)
T 2ic9_A 13 NITLHEQRLVTTRQKLKDAERAVELD----PDDVNKSTLQSRRAAVSALETKLGELKRELADLIA 73 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCC----CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 66677899999999999999999854 88887765555567788888887777777777665
No 48
>1v54_D Cytochrome C oxidase subunit IV isoform 1; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.1.1 PDB: 1oco_D* 1occ_D* 1ocz_D* 1ocr_D* 1v55_D* 2dyr_D* 2dys_D* 2eij_D* 2eik_D* 2eil_D* 2eim_D* 2ein_D* 2occ_D* 2ybb_O* 2zxw_D* 3abk_D* 3abl_D* 3abm_D* 3ag1_D* 3ag2_D* ...
Probab=44.51 E-value=17 Score=29.81 Aligned_cols=41 Identities=12% Similarity=0.288 Sum_probs=30.1
Q ss_pred chhhhhcccccccCCCCCCchhHHHHHHHHHHHHHHHHHHhh
Q psy11615 30 GAFVSTHGKSIDDVDRNSTSHVKDYILGTLILIALTICWYVY 71 (224)
Q Consensus 30 gsf~~aH~~s~D~VDRer~~~wKDi~Lv~slviavgGcWfAy 71 (224)
..|.++.+.+.-+...+. .-||-+...++++||+++..|.+
T Consensus 58 AlYrisF~~t~ae~~~p~-gewK~v~g~v~~~i~~s~~~f~~ 98 (147)
T 1v54_D 58 ELYRLKFKESFAEMNRST-NEWKTVVGAAMFFIGFTALLLIW 98 (147)
T ss_dssp HHHHHHCSSCHHHHTCCC-SHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccccccccCCC-CchhHHHHHHHHHHHHHHHHHHH
Confidence 367777776666655555 59999999999999977666554
No 49
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=42.11 E-value=1.4e+02 Score=24.43 Aligned_cols=74 Identities=18% Similarity=0.275 Sum_probs=44.3
Q ss_pred HHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHHHH
Q psy11615 81 LRRMMKDMEGLQRAELDLANLQKELERARQEQENAASEKIKLERRLQEHQALQGDASDLKSSSAFSDLEVCQLKQEIELL 160 (224)
Q Consensus 81 l~~Mmkdle~Lq~AE~sl~dlQ~~Le~aqee~~~v~~EK~~LE~kl~~~~~ak~ea~rl~~~r~~sd~Els~l~eELe~v 160 (224)
+...-+.+++.+.--..|..+..++..+..+...+..|...|-.++.++.. .|..++.+.++++.|||.+
T Consensus 22 L~~~R~el~~~~~ri~~lE~~r~~~~~l~~~~~~~~~e~~~L~~~l~~E~~----------~R~~aE~~~~~ie~ElEeL 91 (154)
T 2ocy_A 22 LNKSLKTIASQKAAIENYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENE----------LRTKAEEEADKLNKEVEDL 91 (154)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHH----------HHHHHHTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHH
Confidence 444445555555555555666666666666555666666666666655333 3344555667777788777
Q ss_pred HHHH
Q psy11615 161 RNEL 164 (224)
Q Consensus 161 R~aL 164 (224)
-.+|
T Consensus 92 TasL 95 (154)
T 2ocy_A 92 TASL 95 (154)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7655
No 50
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=41.88 E-value=22 Score=21.48 Aligned_cols=15 Identities=33% Similarity=0.678 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHH
Q psy11615 97 DLANLQKELERARQE 111 (224)
Q Consensus 97 sl~dlQ~~Le~aqee 111 (224)
.|+|||++|-+.+..
T Consensus 9 eledlqerlrklrkk 23 (27)
T 3twe_A 9 ELEDLQERLRKLRKK 23 (27)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 577888888876653
No 51
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=41.32 E-value=1.2e+02 Score=23.84 Aligned_cols=17 Identities=29% Similarity=0.235 Sum_probs=3.5
Q ss_pred chhhhhcccccccCCCC
Q psy11615 30 GAFVSTHGKSIDDVDRN 46 (224)
Q Consensus 30 gsf~~aH~~s~D~VDRe 46 (224)
||-|--|--+..-||+.
T Consensus 2 ~~~~~~~~~~~~~~~~~ 18 (110)
T 2v4h_A 2 GSSHHHHHHSSGLVPRG 18 (110)
T ss_dssp -----------CCCCTT
T ss_pred CCcccccccccCCCcch
Confidence 55555555555566653
No 52
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=41.21 E-value=45 Score=26.20 Aligned_cols=37 Identities=27% Similarity=0.319 Sum_probs=23.6
Q ss_pred hhchHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHH
Q psy11615 74 KESSQQHLRRMMKDMEGLQRAELDLANLQKELERARQ 110 (224)
Q Consensus 74 nr~Sk~hl~~Mmkdle~Lq~AE~sl~dlQ~~Le~aqe 110 (224)
+.+...|-.++-.=.+..+.+|+.|.+||+.+..++.
T Consensus 37 ~~k~E~~k~qV~~L~~~~q~sE~~L~~Lqq~fsq~q~ 73 (112)
T 1x79_B 37 KQSSEDSSHQISALVLRAQASEILLEELQQGLSQAKR 73 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555556667777777777777777655
No 53
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=40.46 E-value=1.1e+02 Score=22.83 Aligned_cols=14 Identities=14% Similarity=0.392 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHH
Q psy11615 153 LKQEIELLRNELQR 166 (224)
Q Consensus 153 l~eELe~vR~aL~~ 166 (224)
|..|+++++..+..
T Consensus 57 L~~e~~~l~~~~ee 70 (81)
T 1wt6_A 57 LEAHVRQLQERMEL 70 (81)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 45666666665554
No 54
>1z65_A PRPLP, prion-like protein doppel, doppelganger; transmembrane helix, DHPC, mouse doppel, unknown function; NMR {Synthetic}
Probab=39.29 E-value=5.6 Score=24.95 Aligned_cols=9 Identities=22% Similarity=0.430 Sum_probs=6.9
Q ss_pred HHHHHHhhh
Q psy11615 64 LTICWYVYR 72 (224)
Q Consensus 64 vgGcWfAy~ 72 (224)
+||||.|..
T Consensus 5 LG~~wlai~ 13 (30)
T 1z65_A 5 LGTWWVAIL 13 (30)
T ss_dssp CSSHHHHHH
T ss_pred hhhhHHHHH
Confidence 589998863
No 55
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=38.96 E-value=1.6e+02 Score=24.25 Aligned_cols=66 Identities=26% Similarity=0.350 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHH---HHHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHHHHHHHHHHHHhhh
Q psy11615 95 ELDLANLQKELERARQEQENAAS---EKIKLERRLQEHQALQGDASDLKSSSAFSDLEVCQLKQEIELLRNELQRAEGEL 171 (224)
Q Consensus 95 E~sl~dlQ~~Le~aqee~~~v~~---EK~~LE~kl~~~~~ak~ea~rl~~~r~~sd~Els~l~eELe~vR~aL~~AE~eL 171 (224)
+.++.+||.+|+.-|+|-..|.. |-+.-=..|+- .. ..-.-|+++|..|+..+.--|.+|++.|
T Consensus 17 ~~D~~s~~~eleEnqeEL~iVgkML~EEqgKVDQlqK----Rn---------~~HQKEi~~Lrae~~~~QRn~~K~~~~L 83 (167)
T 4gkw_A 17 KQDTESLQKQLEENQEELEIVGNMLREEQGKVDQLQK----RN---------VAHQKEIGKLRAELGTAQRNLEKADQLL 83 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH----hc---------cHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 34455555577777777766643 10100011111 11 1113477777788888877888887766
Q ss_pred hh
Q psy11615 172 ED 173 (224)
Q Consensus 172 e~ 173 (224)
..
T Consensus 84 kr 85 (167)
T 4gkw_A 84 KR 85 (167)
T ss_dssp HH
T ss_pred Hh
Confidence 53
No 56
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=38.79 E-value=1.6e+02 Score=24.01 Aligned_cols=20 Identities=10% Similarity=0.124 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHhhhhh
Q psy11615 154 KQEIELLRNELQRAEGELED 173 (224)
Q Consensus 154 ~eELe~vR~aL~~AE~eLe~ 173 (224)
+.+++..+.+|..|+..|+.
T Consensus 111 ~a~l~~a~a~l~~a~~~l~~ 130 (277)
T 2f1m_A 111 NAAVTAAKAAVETARINLAY 130 (277)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhhc
Confidence 34444444455555544443
No 57
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=38.53 E-value=3.8e+02 Score=31.40 Aligned_cols=95 Identities=18% Similarity=0.220 Sum_probs=41.6
Q ss_pred HHHHHHHHHhhHhHHH--------HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhcccc-cccccc--cch
Q psy11615 78 QQHLRRMMKDMEGLQR--------AELDLANLQKELERARQEQENAASEKIKLERRLQEHQALQGDAS-DLKSSS--AFS 146 (224)
Q Consensus 78 k~hl~~Mmkdle~Lq~--------AE~sl~dlQ~~Le~aqee~~~v~~EK~~LE~kl~~~~~ak~ea~-rl~~~r--~~s 146 (224)
...+..|-++|..++. |+.-|..+..+-+.|.+.+..|..++..++++-.+...-+.+++ .|.... +--
T Consensus 1933 ~~~V~~l~~~L~~~~~~L~~k~~ea~~~l~~i~~~~~~ae~~k~~v~~~~~~~~~~~~ei~~~k~~~e~dL~~A~Pa~Pk 2012 (3245)
T 3vkg_A 1933 EAQVKDLQVSLAQKNRELDVKNEQANQKLKQMVQDQQAAEIKQKDARELQVQLDVRNKEIAVQKVKAYADLEKAEPTGPL 2012 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-------CH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChH
Confidence 3444555555554432 34445555555555555554454444444433322112222222 111100 111
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy11615 147 DLEVCQLKQEIELLRNELQRAEGELE 172 (224)
Q Consensus 147 d~Els~l~eELe~vR~aL~~AE~eLe 172 (224)
..++..+++++......|..++.+|.
T Consensus 2013 r~~l~~ae~~l~~~~~~L~~~~~~L~ 2038 (3245)
T 3vkg_A 2013 REEVEQLENAANELKLKQDEIVATIT 2038 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23555556666666666666666554
No 58
>1cd1_A CD1, MCD1D.1; immunology, MHC, TCR, glycoprotein, signal, immunoglobulin fold, T-cell; 2.67A {Mus musculus} SCOP: b.1.1.2 d.19.1.1
Probab=37.92 E-value=6.8 Score=33.98 Aligned_cols=16 Identities=13% Similarity=0.154 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhhh
Q psy11615 58 TLILIALTICWYVYRQ 73 (224)
Q Consensus 58 ~slviavgGcWfAy~Q 73 (224)
+.|++++||+||+++.
T Consensus 294 l~ll~~~~~~~~~~~~ 309 (315)
T 1cd1_A 294 LVVVGAVVYYIWRRRS 309 (315)
T ss_dssp ----------------
T ss_pred HHHHHHHHHhheehhc
Confidence 3444556689997653
No 59
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=37.62 E-value=73 Score=29.04 Aligned_cols=23 Identities=22% Similarity=0.239 Sum_probs=0.0
Q ss_pred HHhHhhHHHHHHHHHHHHHhhcc
Q psy11615 198 VKKKLMAEKQLQQAREARFDRGK 220 (224)
Q Consensus 198 ~~Kk~~AekQL~~AkE~~EKikK 220 (224)
++-|..||.-|...++|+-=||.
T Consensus 307 ~isR~~AE~LL~~~~~G~FLVR~ 329 (373)
T 3hhm_B 307 SSNRNKAENLLRGKRDGTFLVRE 329 (373)
T ss_dssp -----------------------
T ss_pred CCCHHHHHHHhccCCCCcEEEEe
Confidence 78899999988877777765553
No 60
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=37.51 E-value=1.3e+02 Score=22.46 Aligned_cols=32 Identities=13% Similarity=-0.053 Sum_probs=21.5
Q ss_pred HHHHHHHHHHhHhhHHHHHHHHHHHHHhhccc
Q psy11615 190 HEIENKAYVKKKLMAEKQLQQAREARFDRGKC 221 (224)
Q Consensus 190 ~EvE~q~y~~Kk~~AekQL~~AkE~~EKikK~ 221 (224)
|-..+-.+...+.+.+.|+.-|.-..+||+||
T Consensus 65 ~~~ql~e~~dE~~Sl~~q~~~~~~qLdkL~K~ 96 (96)
T 3q8t_A 65 FKRQQLELDDELKSVENQMRYAQMQLDKLKKK 96 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 44444455555666777777777778888875
No 61
>2y69_D Cytochrome C oxidase subunit 4 isoform 1; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=37.04 E-value=25 Score=29.42 Aligned_cols=40 Identities=13% Similarity=0.301 Sum_probs=29.7
Q ss_pred hhhhhcccccccCCCCCCchhHHHHHHHHHHHHHHHHHHhh
Q psy11615 31 AFVSTHGKSIDDVDRNSTSHVKDYILGTLILIALTICWYVY 71 (224)
Q Consensus 31 sf~~aH~~s~D~VDRer~~~wKDi~Lv~slviavgGcWfAy 71 (224)
.|.++.+.+.-+...+. .-||-+...++++||+++..|.+
T Consensus 81 lYriSF~qt~aE~~~pt-gEWK~V~ggv~~~i~~s~~~f~~ 120 (169)
T 2y69_D 81 LYRLKFKESFAEMNRST-NEWKTVVGAAMFFIGFTALLLIW 120 (169)
T ss_dssp HHHHHCSSCHHHHTCCC-SHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccccccccCCC-CchhHHHHHHHHHHHHHHHHHHH
Confidence 67777776666655555 59999999999999977666554
No 62
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=36.18 E-value=1.6e+02 Score=24.77 Aligned_cols=16 Identities=25% Similarity=0.225 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHH
Q psy11615 95 ELDLANLQKELERARQ 110 (224)
Q Consensus 95 E~sl~dlQ~~Le~aqe 110 (224)
+..+...+..++.|+.
T Consensus 82 ~a~l~~a~~~~~~a~~ 97 (341)
T 3fpp_A 82 RAQRQQAEAELKLARV 97 (341)
T ss_dssp HHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444444
No 63
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=36.12 E-value=1.4e+02 Score=22.74 Aligned_cols=14 Identities=21% Similarity=0.397 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHH
Q psy11615 96 LDLANLQKELERAR 109 (224)
Q Consensus 96 ~sl~dlQ~~Le~aq 109 (224)
..+.|+..+.+...
T Consensus 48 ~~~edfk~KyE~E~ 61 (119)
T 3ol1_A 48 EDIMRLREKLQEEM 61 (119)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHH
Confidence 33444444444433
No 64
>3r2p_A Apolipoprotein A-I; amphipathic alpha-helix, major protein of high density lipop (HDL), lipid binding, plasma, lipid transport; 2.20A {Homo sapiens} PDB: 1gw3_A 1gw4_A
Probab=35.66 E-value=1.7e+02 Score=23.44 Aligned_cols=33 Identities=15% Similarity=0.251 Sum_probs=21.8
Q ss_pred hcccccccc-cccchhHHHHHHHHHHHHHHHHHH
Q psy11615 133 QGDASDLKS-SSAFSDLEVCQLKQEIELLRNELQ 165 (224)
Q Consensus 133 k~ea~rl~~-~r~~sd~Els~l~eELe~vR~aL~ 165 (224)
...++.|++ +.+.++.=-+++.+-++.+|..|.
T Consensus 132 ~~~~e~Lr~~L~p~~e~lr~~l~~~~e~lk~~l~ 165 (185)
T 3r2p_A 132 RQKLHELQEKLSPLGEEMRDRARAHVDALRTHLA 165 (185)
T ss_dssp HHHHTTTTTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334555665 677777555667788888887663
No 65
>2xs1_A Programmed cell death 6-interacting protein; protein transport-viral protein complex, cell cycle; 2.30A {Homo sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A 2ojq_A
Probab=35.41 E-value=3.1e+02 Score=26.54 Aligned_cols=81 Identities=17% Similarity=0.141 Sum_probs=47.0
Q ss_pred hhhhhhchHHHHHHHHHhhHhH-HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhcccccccccccchhH
Q psy11615 70 VYRQKESSQQHLRRMMKDMEGL-QRAELDLANLQKELERARQEQENAASEKIKLERRLQEHQALQGDASDLKSSSAFSDL 148 (224)
Q Consensus 70 Ay~Qnr~Sk~hl~~Mmkdle~L-q~AE~sl~dlQ~~Le~aqee~~~v~~EK~~LE~kl~~~~~ak~ea~rl~~~r~~sd~ 148 (224)
..++....-.++.++|.||..| ++.+.-|.+..+.|.....+ .++||. +... + =.|..|+.
T Consensus 428 ~~i~~~~g~~~l~~~~~~l~~l~~~~~~~L~e~~~~L~~E~~e-----------d~~~R~----k~g~-~--w~r~~S~~ 489 (704)
T 2xs1_A 428 RSVIEQGGIQTVDQLIKELPELLQRNREILDESLRLLDEEEAT-----------DNDLRA----KFKE-R--WQRTPSNE 489 (704)
T ss_dssp HHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHH----HCTT-T--CCSCCHHH
T ss_pred HHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHH----Hhcc-c--CCCCCcHH
Confidence 3333334457788888888887 55666666666666553321 223333 2221 1 13345554
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy11615 149 EVCQLKQEIELLRNELQRAE 168 (224)
Q Consensus 149 Els~l~eELe~vR~aL~~AE 168 (224)
-...+..++...|..|..|.
T Consensus 490 ~~~~l~~~~~~~~~~l~~A~ 509 (704)
T 2xs1_A 490 LYKPLRAEGTNFRTVLDKAV 509 (704)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45567888888888888884
No 66
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=33.44 E-value=73 Score=23.80 Aligned_cols=45 Identities=20% Similarity=0.192 Sum_probs=32.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhh-hhcCCCCChhhHHHHh----hHHHHH
Q psy11615 145 FSDLEVCQLKQEIELLRNELQRAEGEL-EDRCWAPPPGLQHWLQ----LTHEIE 193 (224)
Q Consensus 145 ~sd~Els~l~eELe~vR~aL~~AE~eL-e~~~ws~P~~LQ~wLQ----lT~EvE 193 (224)
|-..++..|+.||+..++.|..|+..- + .+.+....|+. +.|.+|
T Consensus 23 gv~~~i~~Lk~eL~~m~a~L~da~~~~~~----~~d~~vk~W~~~vrdlaYD~E 72 (115)
T 3qfl_A 23 GVKKNIEDLGKELESMNAALIKIGEVPRE----QLDSQDKLWADEVRELSYVIE 72 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSCGG----GCCHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhccc----cCCHHHHHHHHHHHHHHHHHH
Confidence 445588889999999999999997631 1 13577889987 455554
No 67
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=33.38 E-value=1.4e+02 Score=25.33 Aligned_cols=20 Identities=25% Similarity=0.310 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy11615 91 LQRAELDLANLQKELERARQ 110 (224)
Q Consensus 91 Lq~AE~sl~dlQ~~Le~aqe 110 (224)
|..|+..|..++..|+.++.
T Consensus 72 l~~~~a~l~~~~a~l~~a~~ 91 (369)
T 4dk0_A 72 LNTRKAALASYQAQLVARKT 91 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45555666666666665554
No 68
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=31.83 E-value=1e+02 Score=22.55 Aligned_cols=14 Identities=36% Similarity=0.449 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHH
Q psy11615 98 LANLQKELERARQE 111 (224)
Q Consensus 98 l~dlQ~~Le~aqee 111 (224)
+.+||.-|++..++
T Consensus 21 i~eLq~~L~~K~eE 34 (72)
T 3nmd_A 21 LRDLQYALQEKIEE 34 (72)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 66677777666554
No 69
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=31.27 E-value=1.8e+02 Score=22.31 Aligned_cols=59 Identities=17% Similarity=0.272 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHHHHHHHH
Q psy11615 96 LDLANLQKELERARQEQENAASEKIKLERRLQEHQALQGDASDLKSSSAFSDLEVCQLKQEIELLRNEL 164 (224)
Q Consensus 96 ~sl~dlQ~~Le~aqee~~~v~~EK~~LE~kl~~~~~ak~ea~rl~~~r~~sd~Els~l~eELe~vR~aL 164 (224)
+.|..+..+|..++.+...+..|+..|-..+.++.. .|..++.+.++++.||+.+-.+|
T Consensus 5 ~~~e~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~----------~R~~aE~~~~~ie~ElEeLTasL 63 (97)
T 2eqb_B 5 SNYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENE----------LRTKAEEEADKLNKEVEDLTASL 63 (97)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777778888888888888888888888877433 33445566777777777776655
No 70
>2lx0_A Membrane fusion protein P14; membrane fusion protein transmembrane domain, P14 fast prote ARCH, micelle-peptide complex, membrane protein; NMR {Synthetic}
Probab=30.80 E-value=36 Score=21.27 Aligned_cols=28 Identities=14% Similarity=0.075 Sum_probs=15.0
Q ss_pred CchhHHHHHHHHH-HHHHHHHH-Hhhhhhh
Q psy11615 48 TSHVKDYILGTLI-LIALTICW-YVYRQKE 75 (224)
Q Consensus 48 ~~~wKDi~Lv~sl-viavgGcW-fAy~Qnr 75 (224)
|.-|--|.-++.+ -....|.| |-|.|++
T Consensus 3 htiweviaglvalltflafgfwlfkylqkk 32 (32)
T 2lx0_A 3 HTIWEVIAGLVALLTFLAFGFWLFKYLQKK 32 (32)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4556666543333 33334666 6677764
No 71
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=30.78 E-value=2.9e+02 Score=24.60 Aligned_cols=6 Identities=0% Similarity=-0.446 Sum_probs=2.5
Q ss_pred HHHHHH
Q psy11615 64 LTICWY 69 (224)
Q Consensus 64 vgGcWf 69 (224)
+|=||-
T Consensus 345 ~gyC~s 350 (487)
T 3oja_A 345 KEQYRT 350 (487)
T ss_dssp HHHTCC
T ss_pred HHHhcC
Confidence 344444
No 72
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=30.67 E-value=89 Score=23.07 Aligned_cols=18 Identities=44% Similarity=0.682 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHhHHH
Q psy11615 98 LANLQKELERARQEQENA 115 (224)
Q Consensus 98 l~dlQ~~Le~aqee~~~v 115 (224)
+.+++.+|+.++.++...
T Consensus 29 v~~le~~Le~s~~~q~~~ 46 (79)
T 3cvf_A 29 LRAMERSLEEARAERERA 46 (79)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444433333
No 73
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=30.65 E-value=1.8e+02 Score=22.27 Aligned_cols=58 Identities=17% Similarity=0.043 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhcCCCCChhhHHHHhhHHHHHHHHHHHhHhhHHHHHHHHHHHHHhh
Q psy11615 149 EVCQLKQEIELLRNELQRAEGELEDRCWAPPPGLQHWLQLTHEIENKAYVKKKLMAEKQLQQAREARFDR 218 (224)
Q Consensus 149 Els~l~eELe~vR~aL~~AE~eLe~~~ws~P~~LQ~wLQlT~EvE~q~y~~Kk~~AekQL~~AkE~~EKi 218 (224)
.++.|.-||+.+++.-..-|..+.+ +.-.|+.++..|+.+=..-|.+|..+|..++..
T Consensus 46 ~iq~L~~el~~l~~~~~sLE~~l~e------------~e~~~~~~l~~~q~~i~~lE~eL~~~r~em~~q 103 (131)
T 3tnu_A 46 TMQNLEIELQSQLSMKASLENSLEE------------TKGRYCMQLAQIQEMIGSVEEQLAQLRCEMEQQ 103 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555667777666543333443333 223578888899888888899999998877653
No 74
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=30.00 E-value=1.4e+02 Score=28.37 Aligned_cols=70 Identities=19% Similarity=0.221 Sum_probs=38.3
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHHHHHHHHHHH
Q psy11615 88 MEGLQRAELDLANLQKELERARQEQENAASEKIKLERRLQEHQALQGDASDLKSSSAFSDLEVCQLKQEIELLRNELQRA 167 (224)
Q Consensus 88 le~Lq~AE~sl~dlQ~~Le~aqee~~~v~~EK~~LE~kl~~~~~ak~ea~rl~~~r~~sd~Els~l~eELe~vR~aL~~A 167 (224)
++.+-........++.+++..+.++-.+..+-..+ ++ +..++..|.. ++..|+++|..+-.++...
T Consensus 32 ~~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~---k~----~~~~~~~l~~-------~~~~l~~~i~~le~~~~~~ 97 (485)
T 3qne_A 32 VDEIIAEYKEWVKLRFDLDEHNKKLNSVQKEIGKR---FK----AKEDAKDLIA-------EKEKLSNEKKEIIEKEAEA 97 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH----TTCCCHHHHH-------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hc----CcccHHHHHH-------HHHHHHHHHHHHHHHHHHH
Confidence 56666666667777777777777666555543222 11 1223332222 4445556666666666666
Q ss_pred Hhhh
Q psy11615 168 EGEL 171 (224)
Q Consensus 168 E~eL 171 (224)
+.++
T Consensus 98 ~~~~ 101 (485)
T 3qne_A 98 DKNL 101 (485)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5554
No 75
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=29.85 E-value=2.1e+02 Score=25.56 Aligned_cols=13 Identities=15% Similarity=-0.171 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHH
Q psy11615 156 EIELLRNELQRAE 168 (224)
Q Consensus 156 ELe~vR~aL~~AE 168 (224)
+++.+-.++..|.
T Consensus 457 ~~~~~~~~~~~~~ 469 (487)
T 3oja_A 457 LNGEADLALASAN 469 (487)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hhhhhhhhhHhcc
Confidence 3333333444443
No 76
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=29.85 E-value=1.7e+02 Score=21.71 Aligned_cols=19 Identities=21% Similarity=0.459 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHhhhh
Q psy11615 154 KQEIELLRNELQRAEGELE 172 (224)
Q Consensus 154 ~eELe~vR~aL~~AE~eLe 172 (224)
..|+..|.+.+.-|...|+
T Consensus 73 ~dE~~Sl~~q~~~~~~qLd 91 (96)
T 3q8t_A 73 DDELKSVENQMRYAQMQLD 91 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4566666666666555543
No 77
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=29.49 E-value=1.9e+02 Score=22.15 Aligned_cols=32 Identities=25% Similarity=0.340 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy11615 97 DLANLQKELERARQEQENAASEKIKLERRLQE 128 (224)
Q Consensus 97 sl~dlQ~~Le~aqee~~~v~~EK~~LE~kl~~ 128 (224)
.+..+.++++....|+..-..+|..||-+|..
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~ 44 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEAQLER 44 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778889999999999999999999999865
No 78
>1vf7_A Multidrug resistance protein MEXA; alpha hairpin, beta barrel, membrane protein; 2.40A {Pseudomonas aeruginosa} SCOP: f.46.1.1 PDB: 2v4d_A 1t5e_A
Probab=29.16 E-value=1.9e+02 Score=24.94 Aligned_cols=31 Identities=10% Similarity=0.009 Sum_probs=22.6
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhhhhcC
Q psy11615 145 FSDLEVCQLKQEIELLRNELQRAEGELEDRC 175 (224)
Q Consensus 145 ~sd~Els~l~eELe~vR~aL~~AE~eLe~~~ 175 (224)
.+..++...+.++++.+.+|..|+..|+...
T Consensus 109 is~~~~~~a~~~~~~a~a~l~~a~~~l~~~~ 139 (369)
T 1vf7_A 109 VSKQQYADANAAYLQSKAAVEQARINLRYTK 139 (369)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHTTE
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHhhcCCE
Confidence 3455666777888888888888888877543
No 79
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=28.64 E-value=1.7e+02 Score=23.63 Aligned_cols=72 Identities=17% Similarity=0.262 Sum_probs=49.7
Q ss_pred HHHHhhHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHHHHHH
Q psy11615 83 RMMKDMEGLQRAELDLANLQKELERARQEQENAASEKIKLERRLQEHQALQGDASDLKSSSAFSDLEVCQLKQEIELLRN 162 (224)
Q Consensus 83 ~Mmkdle~Lq~AE~sl~dlQ~~Le~aqee~~~v~~EK~~LE~kl~~~~~ak~ea~rl~~~r~~sd~Els~l~eELe~vR~ 162 (224)
.+-+.+.+.+.....|..+..++..+..+-..+..|...|-.++.++.. .|..++.+.++++.|||.+-.
T Consensus 12 ~~r~~l~~~~~~~~~le~l~~~l~~l~~~l~~~~~e~~~L~~~l~eE~~----------~R~~aE~~~~~ie~ElE~LTa 81 (135)
T 2e7s_A 12 KSLKTIASQKAAIENYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENE----------LRTKAEEEADKLNKEVEDLTA 81 (135)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHTHHHHHHHTTS----------HHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHH
Confidence 3445667777777778888888888888777788888888888777333 334455566666667766666
Q ss_pred HH
Q psy11615 163 EL 164 (224)
Q Consensus 163 aL 164 (224)
+|
T Consensus 82 sL 83 (135)
T 2e7s_A 82 SL 83 (135)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 80
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=28.54 E-value=2.6e+02 Score=25.87 Aligned_cols=31 Identities=23% Similarity=0.396 Sum_probs=19.0
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q psy11615 88 MEGLQRAELDLANLQKELERARQEQENAASE 118 (224)
Q Consensus 88 le~Lq~AE~sl~dlQ~~Le~aqee~~~v~~E 118 (224)
++.+.........++.+++..+.++-.+..+
T Consensus 30 ~~~~~~l~~~~r~~~~~~~~l~~~~n~~sk~ 60 (455)
T 2dq0_A 30 VDEILKLDTEWRTKLKEINRLRHERNKIAVE 60 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666666666677777666655554443
No 81
>2lem_A Apolipoprotein A-I; lipid transport; NMR {Mus musculus}
Probab=26.21 E-value=2.7e+02 Score=22.86 Aligned_cols=34 Identities=15% Similarity=0.253 Sum_probs=22.0
Q ss_pred hhcccccccc-cccchhHHHHHHHHHHHHHHHHHH
Q psy11615 132 LQGDASDLKS-SSAFSDLEVCQLKQEIELLRNELQ 165 (224)
Q Consensus 132 ak~ea~rl~~-~r~~sd~Els~l~eELe~vR~aL~ 165 (224)
....++.|+. +.++++.--.++.+-++.+|..|.
T Consensus 129 ~~~~~e~Lr~~L~p~~e~lr~kl~~~~e~lk~~l~ 163 (216)
T 2lem_A 129 ARQKLQELQGRLSPVAEEFRDRMRTHVDSLRTQLA 163 (216)
T ss_dssp HHCSCCSSCCSCSTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 4445666775 777777555566777777776553
No 82
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=26.08 E-value=1.8e+02 Score=22.20 Aligned_cols=34 Identities=12% Similarity=0.345 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy11615 95 ELDLANLQKELERARQEQENAASEKIKLERRLQE 128 (224)
Q Consensus 95 E~sl~dlQ~~Le~aqee~~~v~~EK~~LE~kl~~ 128 (224)
|..+.+|+..+..+..++.....|-.|+...+.|
T Consensus 19 e~~I~~LR~qid~~~~e~a~l~leldn~~~~~ed 52 (119)
T 3ol1_A 19 EEEMRELRRQVDQLTNDKARVEVERDNLAEDIMR 52 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456777777777777666666665555544443
No 83
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=26.03 E-value=2.2e+02 Score=21.69 Aligned_cols=57 Identities=19% Similarity=0.234 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcCCCCChhhHHHHhhHHHHHHHHHHHhHhhHHHHHHHHHHHHHhh
Q psy11615 150 VCQLKQEIELLRNELQRAEGELEDRCWAPPPGLQHWLQLTHEIENKAYVKKKLMAEKQLQQAREARFDR 218 (224)
Q Consensus 150 ls~l~eELe~vR~aL~~AE~eLe~~~ws~P~~LQ~wLQlT~EvE~q~y~~Kk~~AekQL~~AkE~~EKi 218 (224)
++.|.-||+.+++.-..-|..|.+ ..-.|+.++..|+.+=..-|.+|..+|..++..
T Consensus 45 iq~L~~el~~l~~~~~~LE~~l~e------------~e~~~~~~l~~~q~~i~~lE~eL~~~r~e~~~q 101 (129)
T 3tnu_B 45 IQRLRAEIDNVKKQCANLQNAIAD------------AEQRGELALKDARNKLAELEEALQKAKQDMARL 101 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 444556666665543333443333 233578888888888888888898888877653
No 84
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=25.65 E-value=1.9e+02 Score=23.80 Aligned_cols=20 Identities=20% Similarity=0.361 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy11615 148 LEVCQLKQEIELLRNELQRA 167 (224)
Q Consensus 148 ~Els~l~eELe~vR~aL~~A 167 (224)
..+..|-.|+..+|.++...
T Consensus 113 akI~aL~~Ei~~Lr~qL~~~ 132 (175)
T 3lay_A 113 AKINAVAKEMESLGQKLDEQ 132 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 35555556666666655544
No 85
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=25.34 E-value=60 Score=21.50 Aligned_cols=23 Identities=9% Similarity=0.268 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhc
Q psy11615 54 YILGTLILIALTICWYVYRQKES 76 (224)
Q Consensus 54 i~Lv~slviavgGcWfAy~Qnr~ 76 (224)
++-.++++..++++||.|.=+|+
T Consensus 17 VVgGv~~~~ii~~~~~~~~RRr~ 39 (44)
T 2ks1_B 17 MVGALLLLLVVALGIGLFMRRRH 39 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTT
T ss_pred hhHHHHHHHHHHHHHHHHhhhhH
Confidence 34446677777788888776554
No 86
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=24.21 E-value=4.2e+02 Score=25.00 Aligned_cols=32 Identities=19% Similarity=0.391 Sum_probs=21.9
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q psy11615 87 DMEGLQRAELDLANLQKELERARQEQENAASE 118 (224)
Q Consensus 87 dle~Lq~AE~sl~dlQ~~Le~aqee~~~v~~E 118 (224)
|++.+.........++.+++..+.++-.+..+
T Consensus 68 ~~~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~ 99 (501)
T 1wle_A 68 DLPGIISTWQELRQLREQIRSLEEEKEAVTEA 99 (501)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677777777777777777777766555554
No 87
>1zza_A Stannin, AG8_1; helix, membrane protein; NMR {Homo sapiens}
Probab=24.14 E-value=40 Score=25.37 Aligned_cols=27 Identities=30% Similarity=0.491 Sum_probs=15.7
Q ss_pred hHHHHHHHHHHHH-------HHHHHHhhhhhhch
Q psy11615 51 VKDYILGTLILIA-------LTICWYVYRQKESS 77 (224)
Q Consensus 51 wKDi~Lv~slvia-------vgGcWfAy~Qnr~S 77 (224)
--..+-++.|+|| |-|||-+.+=.|-+
T Consensus 11 ttgvvtv~viliavaalg~li~gcwcylrlqri~ 44 (90)
T 1zza_A 11 TTGVVTVIVILIAIAALGALILGCWCYLRLQRIS 44 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTTSSCSSC
T ss_pred CcceEEehhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555555554 35999887654443
No 88
>1oqw_A Fimbrial protein; type IV pilin, fiber-forming protein, adhesion, pseudomonas aerugionosa, PAK pilin, cell adhesion; 2.00A {Pseudomonas aeruginosa} SCOP: d.24.1.1
Probab=23.46 E-value=1.8e+02 Score=21.94 Aligned_cols=22 Identities=9% Similarity=0.105 Sum_probs=12.1
Q ss_pred hhhchHHHHHHHHHhhHhHHHH
Q psy11615 73 QKESSQQHLRRMMKDMEGLQRA 94 (224)
Q Consensus 73 Qnr~Sk~hl~~Mmkdle~Lq~A 94 (224)
|+-..+.++.....++..|+.|
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~a 46 (144)
T 1oqw_A 25 QNYVARSEGASALASVNPLKTT 46 (144)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555566666666555553
No 89
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=23.31 E-value=2.5e+02 Score=25.62 Aligned_cols=70 Identities=26% Similarity=0.409 Sum_probs=34.3
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHHHHHHHHHHH
Q psy11615 88 MEGLQRAELDLANLQKELERARQEQENAASEKIKLERRLQEHQALQGDASDLKSSSAFSDLEVCQLKQEIELLRNELQRA 167 (224)
Q Consensus 88 le~Lq~AE~sl~dlQ~~Le~aqee~~~v~~EK~~LE~kl~~~~~ak~ea~rl~~~r~~sd~Els~l~eELe~vR~aL~~A 167 (224)
++.+.........++.+++..+.++-.+..+ +........++..|.. ++..+++++..+-.++...
T Consensus 29 ~~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~-------i~~~~~~~~~~~~l~~-------~~~~~~~~~~~~~~~~~~~ 94 (425)
T 2dq3_A 29 VDKVLELDKRRREIIKRLEALRSERNKLSKE-------IGKLKREGKDTTEIQN-------RVKELKEEIDRLEEELRKV 94 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------TTGGGSSCSCTTTSTT-------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHhhcCccHHHHHH-------HHHHHHHHHHHHHHHHHHH
Confidence 4555555555666666666666544444332 1110011223333332 4555566666666666666
Q ss_pred Hhhh
Q psy11615 168 EGEL 171 (224)
Q Consensus 168 E~eL 171 (224)
+.++
T Consensus 95 ~~~~ 98 (425)
T 2dq3_A 95 EEEL 98 (425)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6544
No 90
>3lnn_A Membrane fusion protein (MFP) heavy metal cation ZNEB (CZCB-LIKE); structural genomics, PSI-2, protein structure initiative; 2.80A {Cupriavidus metallidurans}
Probab=22.36 E-value=2.8e+02 Score=23.38 Aligned_cols=23 Identities=26% Similarity=0.351 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Q psy11615 149 EVCQLKQEIELLRNELQRAEGEL 171 (224)
Q Consensus 149 Els~l~eELe~vR~aL~~AE~eL 171 (224)
++...+.++.+.+.++..|+..|
T Consensus 130 ~~~~a~~~~~~a~a~l~~a~~~l 152 (359)
T 3lnn_A 130 DFEQAQSDYDQAASESQRADARL 152 (359)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444433
No 91
>2k6i_A Uncharacterized protein MJ0223; H subunit, A1AO ATP synthase, V1VO ATPase, F1FO ATP synthase, structural protein; NMR {Methanocaldococcus jannaschii}
Probab=21.12 E-value=67 Score=22.55 Aligned_cols=22 Identities=27% Similarity=0.119 Sum_probs=18.0
Q ss_pred hHhhHHHHHHHHHHHHHhhccc
Q psy11615 200 KKLMAEKQLQQAREARFDRGKC 221 (224)
Q Consensus 200 Kk~~AekQL~~AkE~~EKikK~ 221 (224)
-+..|+.-+..|++.|++|.+|
T Consensus 35 A~~ea~~ii~eAreeAkeI~~~ 56 (56)
T 2k6i_A 35 AKNRAEQIKAEAIEEAKKLIAC 56 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHcC
Confidence 3556778888999999999887
No 92
>4dyl_A Tyrosine-protein kinase FES/FPS; structural genomics, structural genomics consortium, BCR, CR associated substrate, transferase; 2.18A {Homo sapiens}
Probab=21.02 E-value=4.4e+02 Score=23.44 Aligned_cols=32 Identities=19% Similarity=0.223 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy11615 98 LANLQKELERARQEQENAASEKIKLERRLQEH 129 (224)
Q Consensus 98 l~dlQ~~Le~aqee~~~v~~EK~~LE~kl~~~ 129 (224)
|..+..+|.+++.+..+-..+=-+|+..+.+.
T Consensus 311 L~~~~~~l~~~~~~~~~k~~~v~~~~~~~~~~ 342 (406)
T 4dyl_A 311 LTSVTDELAVATEMVFRRQEMVTQLQQELRNE 342 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555554444555566666663
No 93
>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli}
Probab=20.38 E-value=1.1e+02 Score=19.02 Aligned_cols=8 Identities=25% Similarity=0.663 Sum_probs=5.5
Q ss_pred hhhchHHH
Q psy11615 73 QKESSQQH 80 (224)
Q Consensus 73 Qnr~Sk~h 80 (224)
|+|..|.|
T Consensus 24 Q~Kr~K~~ 31 (37)
T 2rdd_B 24 QQKRTKEH 31 (37)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77776666
No 94
>1nfn_A Apolipoprotein E3; lipid transport, heparin-binding, plasma protein, HDL, VLDL; 1.80A {Homo sapiens} SCOP: a.24.1.1 PDB: 1h7i_A 1ea8_A 1b68_A 1nfo_A 2kc3_A 1ya9_A
Probab=20.28 E-value=1.4e+02 Score=24.41 Aligned_cols=24 Identities=13% Similarity=0.057 Sum_probs=14.7
Q ss_pred cccchhHHHHHHHHHHHHHHHHHH
Q psy11615 142 SSAFSDLEVCQLKQEIELLRNELQ 165 (224)
Q Consensus 142 ~r~~sd~Els~l~eELe~vR~aL~ 165 (224)
+.++++--..++.+.++.+|..|.
T Consensus 137 L~Py~eelr~kl~~~~eeLr~~l~ 160 (191)
T 1nfn_A 137 LASHLRKLRKRLLRDADDLQKRLA 160 (191)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHhH
Confidence 456666333445677777777664
No 95
>2f95_B Sensory rhodopsin II transducer; membrane protein complex, signal transduction, photocycle ST membrane protein; HET: BOG RET; 2.20A {Natronomonas pharaonis} SCOP: f.17.4.1
Probab=20.04 E-value=67 Score=23.31 Aligned_cols=38 Identities=16% Similarity=0.267 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhchHHHHHHHHHhhHhH
Q psy11615 54 YILGTLILIALTICWYVYRQKESSQQHLRRMMKDMEGL 91 (224)
Q Consensus 54 i~Lv~slviavgGcWfAy~Qnr~Sk~hl~~Mmkdle~L 91 (224)
+.+++++++.+.+++++|.-.++-..-|.++...++.+
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~l~~~~~~i 97 (163)
T 2f95_B 60 AILGLIILLGINLGLVAATLGGDTAASLSTLAAKASRM 97 (163)
T ss_dssp HHHHHHHHHHHHHHHHC---------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555555555555555445566665555554
No 96
>1ca9_A TRAF2, protein (TNF receptor associated factor 2); TNF signaling, TRAF, adapter protein, cell surviVal; 2.30A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1qsc_A 1czz_A
Probab=20.00 E-value=1.2e+02 Score=24.03 Aligned_cols=33 Identities=15% Similarity=0.268 Sum_probs=25.6
Q ss_pred chHHHHHHHHHhhHhH-HHHHHHHHHHHHHHHHH
Q psy11615 76 SSQQHLRRMMKDMEGL-QRAELDLANLQKELERA 108 (224)
Q Consensus 76 ~Sk~hl~~Mmkdle~L-q~AE~sl~dlQ~~Le~a 108 (224)
....||..+..+|+.+ ...++.+.+++.+++..
T Consensus 3 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 36 (192)
T 1ca9_A 3 DKIEALSSKVQQLERSIGLKDLAMADLEQKVLEM 36 (192)
T ss_dssp CTTHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3467999999888877 66677788888887764
Done!