Query psy11615
Match_columns 224
No_of_seqs 64 out of 66
Neff 3.6
Searched_HMMs 13730
Date Fri Aug 16 23:09:33 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11615.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/11615hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1v54d_ f.23.1.1 (D:) Mitochon 57.6 3.6 0.00026 31.8 3.3 41 30-71 55-95 (144)
2 d1gs9a_ a.24.1.1 (A:) Apolipop 41.9 24 0.0017 25.4 5.6 26 82-107 70-96 (144)
3 d1fxka_ a.2.5.1 (A:) Prefoldin 34.7 64 0.0047 22.0 8.2 31 98-128 3-33 (107)
4 d1vf7a_ f.46.1.1 (A:) Multidru 33.9 78 0.0057 22.8 8.0 34 146-179 82-115 (237)
5 d1qvra2 c.37.1.20 (A:149-535) 28.8 1.5E+02 0.011 24.6 9.5 21 149-169 314-334 (387)
6 d2ouwa1 a.152.1.4 (A:1-134) Hy 22.0 32 0.0023 24.2 3.1 63 13-76 17-92 (134)
7 d2e74g1 f.23.26.1 (G:9-35) Pet 19.8 49 0.0036 18.6 3.0 19 58-76 4-23 (27)
8 d2a26a1 a.2.16.1 (A:1-47) Calc 19.8 91 0.0067 19.5 4.6 13 116-128 30-42 (47)
9 d1ykhb1 a.252.1.1 (B:2-130) RN 17.2 1.2E+02 0.0086 21.9 5.6 33 96-128 91-123 (129)
10 d1seta1 a.2.7.1 (A:1-110) Sery 17.2 1.4E+02 0.01 20.0 9.0 75 87-179 26-102 (110)
No 1
>d1v54d_ f.23.1.1 (D:) Mitochondrial cytochrome c oxidase subunit IV {Cow (Bos taurus) [TaxId: 9913]}
Probab=57.62 E-value=3.6 Score=31.76 Aligned_cols=41 Identities=15% Similarity=0.296 Sum_probs=33.5
Q ss_pred chhhhhcccccccCCCCCCchhHHHHHHHHHHHHHHHHHHhh
Q psy11615 30 GAFVSTHGKSIDDVDRNSTSHVKDYILGTLILIALTICWYVY 71 (224)
Q Consensus 30 gsf~~aH~~s~D~VDRer~~~wKDi~Lv~slviavgGcWfAy 71 (224)
..|+++.+.+.-+.+.+ .+-||-+.-++++.||++++.|..
T Consensus 55 alYrisF~~t~ae~~~p-~gewK~v~g~~~~~i~~s~~i~~~ 95 (144)
T d1v54d_ 55 ELYRLKFKESFAEMNRS-TNEWKTVVGAAMFFIGFTALLLIW 95 (144)
T ss_dssp HHHHHHCSSCHHHHTCC-CSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccccccccCC-CCchhHHHHHHHHHHHHHHHHHHH
Confidence 56777778777777765 588999999999999999887765
No 2
>d1gs9a_ a.24.1.1 (A:) Apolipoprotein E {Human (Homo sapiens), E4 [TaxId: 9606]}
Probab=41.90 E-value=24 Score=25.42 Aligned_cols=26 Identities=19% Similarity=0.417 Sum_probs=11.2
Q ss_pred HHHHHhhHhH-HHHHHHHHHHHHHHHH
Q psy11615 82 RRMMKDMEGL-QRAELDLANLQKELER 107 (224)
Q Consensus 82 ~~Mmkdle~L-q~AE~sl~dlQ~~Le~ 107 (224)
.++.++++.| .+.+..+.+++.+|+.
T Consensus 70 ~~l~~~~e~lr~~l~~~lee~r~kl~~ 96 (144)
T d1gs9a_ 70 ARLSKELQAAQARLGADMEDVRGRLVQ 96 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444 3344444444444433
No 3
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=34.66 E-value=64 Score=22.03 Aligned_cols=31 Identities=13% Similarity=0.289 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy11615 98 LANLQKELERARQEQENAASEKIKLERRLQE 128 (224)
Q Consensus 98 l~dlQ~~Le~aqee~~~v~~EK~~LE~kl~~ 128 (224)
+.+...+++..+.+.+.+...++.|+..+.+
T Consensus 3 lqe~~~~~q~lq~el~~~~~q~~~le~q~~E 33 (107)
T d1fxka_ 3 VQHQLAQFQQLQQQAQAISVQKQTVEMQINE 33 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555556666666666666667666666
No 4
>d1vf7a_ f.46.1.1 (A:) Multidrug resistance protein MexA domain {Pseudomonas aeruginosa [TaxId: 287]}
Probab=33.90 E-value=78 Score=22.80 Aligned_cols=34 Identities=12% Similarity=0.049 Sum_probs=24.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCC
Q psy11615 146 SDLEVCQLKQEIELLRNELQRAEGELEDRCWAPP 179 (224)
Q Consensus 146 sd~Els~l~eELe~vR~aL~~AE~eLe~~~ws~P 179 (224)
+..++...+.++.+.+.++..|+..|+.....+|
T Consensus 82 ~~~~~~~~~~~~~~a~~~l~~a~~~l~~~~i~ap 115 (237)
T d1vf7a_ 82 SKQQYADANAAYLQSKAAVEQARINLRYTKVLSP 115 (237)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHTTEEECS
T ss_pred ccchhhhhhhhcchhHHHHHHHhhhhcccccccc
Confidence 3446666778888888899999888875444444
No 5
>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}
Probab=28.79 E-value=1.5e+02 Score=24.60 Aligned_cols=21 Identities=19% Similarity=0.395 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q psy11615 149 EVCQLKQEIELLRNELQRAEG 169 (224)
Q Consensus 149 Els~l~eELe~vR~aL~~AE~ 169 (224)
+++.|+++|+.+|..+..|++
T Consensus 314 ~i~~Lk~~Le~lr~~le~A~r 334 (387)
T d1qvra2 314 KLREAQHRLDEVRREIELAER 334 (387)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 556677888888888888875
No 6
>d2ouwa1 a.152.1.4 (A:1-134) Hypothetical protein Rru_A0301 {Rhodospirillum rubrum [TaxId: 1085]}
Probab=22.01 E-value=32 Score=24.16 Aligned_cols=63 Identities=11% Similarity=0.143 Sum_probs=42.2
Q ss_pred HHHHHHHHHhccccc-ccchhhhhcccccccCC------------CCCCchhHHHHHHHHHHHHHHHHHHhhhhhhc
Q psy11615 13 QAREACEKLRKKRSS-LVGAFVSTHGKSIDDVD------------RNSTSHVKDYILGTLILIALTICWYVYRQKES 76 (224)
Q Consensus 13 ~a~e~~eki~kKr~s-~~gsf~~aH~~s~D~VD------------Rer~~~wKDi~Lv~slviavgGcWfAy~Qnr~ 76 (224)
..++..+.|++.++. ++.-+..+.+.+++-.. ...++. +..+++.+.|..+-||-|-...|..
T Consensus 17 e~~~i~~~i~~~~g~~~vpN~~~~la~~P~~l~~~~~~~~~~~~~~~~L~~-~~kEli~l~vS~~n~C~YC~~~H~~ 92 (134)
T d2ouwa1 17 EVKAVFDDIRATRGSDFVNNIWRGLANDPALLKRTWEQVKTVMVGEGALDP-LTREMIYLAVSTANSCSYCAHSHTA 92 (134)
T ss_dssp HHHHHHHHHHHHHSSSCCCHHHHHHTTSHHHHHHHHHHHHHHHSSSSSSCH-HHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHccCHHHHHHHHHHHHHHHHhhhccCH-HHHHHHHHHHHHHcCChHHHHHHHH
Confidence 467788899998885 44444444444443111 223344 7889999999999999998877753
No 7
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=19.80 E-value=49 Score=18.60 Aligned_cols=19 Identities=26% Similarity=0.476 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHh-hhhhhc
Q psy11615 58 TLILIALTICWYV-YRQKES 76 (224)
Q Consensus 58 ~slviavgGcWfA-y~Qnr~ 76 (224)
-+|+..++|.+|| |.|-|+
T Consensus 4 gli~~tl~glf~aayqqykr 23 (27)
T d2e74g1 4 GLVFATLGGLFYAAYQQYKR 23 (27)
T ss_dssp HHHHHHHHHHHHHHHHHTTS
T ss_pred eehHHHHHHHHHHHHHHhcC
Confidence 4567778888875 666543
No 8
>d2a26a1 a.2.16.1 (A:1-47) Calcyclin-binding protein, CacyBP {Human (Homo sapiens) [TaxId: 9606]}
Probab=19.78 E-value=91 Score=19.50 Aligned_cols=13 Identities=31% Similarity=0.557 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHH
Q psy11615 116 ASEKIKLERRLQE 128 (224)
Q Consensus 116 ~~EK~~LE~kl~~ 128 (224)
..||..||-++.+
T Consensus 30 t~Ek~kletEik~ 42 (47)
T d2a26a1 30 TAEKSKIETEIKN 42 (47)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5677777766665
No 9
>d1ykhb1 a.252.1.1 (B:2-130) RNA polymerase II holoenzyme component SRB7 (MED21) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=17.22 E-value=1.2e+02 Score=21.91 Aligned_cols=33 Identities=30% Similarity=0.342 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy11615 96 LDLANLQKELERARQEQENAASEKIKLERRLQE 128 (224)
Q Consensus 96 ~sl~dlQ~~Le~aqee~~~v~~EK~~LE~kl~~ 128 (224)
.++..|++++..+.++...+..++..|=+++..
T Consensus 91 ~~i~~Le~E~~~~~~el~~~v~e~e~ll~~i~~ 123 (129)
T d1ykhb1 91 RKIDMLQKKLVEVEDEKIEAIKKKEKLMRHVDS 123 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457788888888888887777777766666554
No 10
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=17.22 E-value=1.4e+02 Score=20.00 Aligned_cols=75 Identities=23% Similarity=0.297 Sum_probs=39.5
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhh-hh-cccccccccccchhHHHHHHHHHHHHHHHHH
Q psy11615 87 DMEGLQRAELDLANLQKELERARQEQENAASEKIKLERRLQEHQA-LQ-GDASDLKSSSAFSDLEVCQLKQEIELLRNEL 164 (224)
Q Consensus 87 dle~Lq~AE~sl~dlQ~~Le~aqee~~~v~~EK~~LE~kl~~~~~-ak-~ea~rl~~~r~~sd~Els~l~eELe~vR~aL 164 (224)
|++.+-.......+++.+++..+.++-.++.+ ++ ++ .++..+ -.++..|++++..+-..+
T Consensus 26 ~ld~i~~ld~~rr~l~~~~e~l~~~rN~~sk~-----------i~k~~~~~~~~l-------~~~~k~lk~~i~~le~~~ 87 (110)
T d1seta1 26 DLEALLALDREVQELKKRLQEVQTERNQVAKR-----------VPKAPPEEKEAL-------IARGKALGEEAKRLEEAL 87 (110)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------GGGCCHHHHHHH-------HHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHhhccchHHH-------HHHHHHHHHHHHHHHHHH
Confidence 45566666667777777777777655444332 11 00 001100 113344566777777777
Q ss_pred HHHHhhhhhcCCCCC
Q psy11615 165 QRAEGELEDRCWAPP 179 (224)
Q Consensus 165 ~~AE~eLe~~~ws~P 179 (224)
..++.++..-..+-|
T Consensus 88 ~~~~~~l~~~ll~iP 102 (110)
T d1seta1 88 REKEARLEALLLQVP 102 (110)
T ss_dssp HHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHcCC
Confidence 777776665433333
Done!