RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy11615
(224 letters)
>gnl|CDD|212596 cd11722, SOAR, STIM1 Orai1-activating region. STIM1 (stromal
interaction module 1) is a metazoan transmembrane
protein located in the endoplasmic reticulum (ER)
membrane, which functions as a sensor for ER calcium
ion levels and activates store-operated Ca2+ influx
channels (SOCs), such as the Orai1 Ca2+ channel located
in the plasma membrane. STIM1 has an N-terminal
Ca-binding EF-hand domain, which is located in the ER
lumen. Responding to the release of Ca2+ from the ER,
STIM1 was found to aggregate near the plasma membrane
and contact Orai1. This model describes a region near
the C-terminus of STIM1, which has been shown to
mediate the interaction with Orai1 and has been labeled
SOAR (STIM1 Orai1-activating region). STIM1 has also
been linked to sensing oxidative and
temperature-variation stress and may play a rather
general role in mediating calcium signaling in response
to stress. Dimerization of STIM1 via the SOAR domain
appears required for the activation of the Orai1
calcium channel. A model for STIM1 activation has been
proposed, in which an inhibitory helix N-terminal to
the SOAR domain prevents STIM1 clustering or
aggregation, and in which conformational changes
triggered by depletion of the calcium stores allow the
clustering and activation of Orai1.
Length = 92
Score = 54.2 bits (131), Expect = 6e-10
Identities = 27/40 (67%), Positives = 32/40 (80%)
Query: 6 MAEKQLQQAREACEKLRKKRSSLVGAFVSTHGKSIDDVDR 45
AEKQLQ+A+EACEKLRKKRSS+ G+F H S+DDVD
Sbjct: 22 DAEKQLQEAKEACEKLRKKRSSVFGSFRLAHSSSLDDVDN 61
Score = 43.8 bits (104), Expect = 4e-06
Identities = 21/33 (63%), Positives = 26/33 (78%)
Query: 182 LQHWLQLTHEIENKAYVKKKLMAEKQLQQAREA 214
LQ LQLT+E+E + Y KKK AEKQLQ+A+EA
Sbjct: 1 LQQLLQLTYELEMQYYNKKKQDAEKQLQEAKEA 33
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common
bacterial type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing and
segregating chromosomes for partition. SMC proteins are
found in bacteria, archaea, and eukaryotes. This family
represents the SMC protein of most bacteria. The smc
gene is often associated with scpB (TIGR00281) and scpA
genes, where scp stands for segregation and condensation
protein. SMC was shown (in Caulobacter crescentus) to be
induced early in S phase but present and bound to DNA
throughout the cell cycle [Cellular processes, Cell
division, DNA metabolism, Chromosome-associated
proteins].
Length = 1179
Score = 41.2 bits (97), Expect = 3e-04
Identities = 32/102 (31%), Positives = 50/102 (49%), Gaps = 4/102 (3%)
Query: 72 RQKESSQQHLRRMMKDMEG-LQRAELDLANLQKELERARQEQENAASEKIKLERRLQEHQ 130
+ SS RR ++++E ++ E +A L+K L R+E E E +L + L+E
Sbjct: 666 AKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEE-- 723
Query: 131 ALQGDASDLKSSSAFSDLEVCQLKQEIELLRNELQRAEGELE 172
L S L+ A + EV QL++ I L EL E E+E
Sbjct: 724 -LSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIE 764
Score = 40.8 bits (96), Expect = 4e-04
Identities = 35/145 (24%), Positives = 58/145 (40%), Gaps = 19/145 (13%)
Query: 75 ESSQQHLRRMMKDMEGLQRAELDLANLQKELERARQEQENAASEKIKLERRLQEHQALQG 134
++ ++ + E L E L L++ELE E E +E +LE RL+E +
Sbjct: 323 AQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLE 382
Query: 135 DASDLKSSSAFSDLEVCQLKQEIELLRNELQRAEGELEDRCWAPPPGLQHWLQLTHEIEN 194
+V QL+ +I L NE++R E LE L+ + + E
Sbjct: 383 TLRS----------KVAQLELQIASLNNEIERLEARLER--------LEDRRERLQQ-EI 423
Query: 195 KAYVKKKLMAEKQLQQAREARFDRG 219
+ +KK AE + QA +
Sbjct: 424 EELLKKLEEAELKELQAELEELEEE 448
Score = 31.6 bits (72), Expect = 0.35
Identities = 28/97 (28%), Positives = 47/97 (48%), Gaps = 9/97 (9%)
Query: 82 RRMMKDMEGLQRAELDLANLQKELER----ARQEQENAASEKIKLERRLQEH-QALQGDA 136
+ +++E LQ+ LAN LE+ R+ N + +LE +L+E L A
Sbjct: 277 SELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELA 336
Query: 137 SDLKSSSAFSDLEVCQLKQEIELLRNELQRAEGELED 173
+L ++ +LK+E+E L EL+ E ELE+
Sbjct: 337 EELAELEE----KLEELKEELESLEAELEELEAELEE 369
Score = 30.0 bits (68), Expect = 1.3
Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 3/82 (3%)
Query: 92 QRAELDLANLQKELERARQEQENAASEKIKLERRLQEHQALQGDASDLKSSSAFSDLEVC 151
+ EL+LA L LE R+E E E + E L+E A + +L+ LEV
Sbjct: 221 ELRELELALLVLRLEELREELEELQEELKEAEEELEELTA---ELQELEEKLEELRLEVS 277
Query: 152 QLKQEIELLRNELQRAEGELED 173
+L++EIE L+ EL E+
Sbjct: 278 ELEEEIEELQKELYALANEISR 299
Score = 29.6 bits (67), Expect = 1.4
Identities = 21/101 (20%), Positives = 41/101 (40%), Gaps = 3/101 (2%)
Query: 72 RQKESSQQHLRRMMKDMEGLQRAELDLANLQKELERARQEQENAASEKIKLERRLQEHQA 131
+E + RR+ L+ E + L +++E E E +LE L+
Sbjct: 821 NLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLN 880
Query: 132 LQGDASDLKSSSAFSDLEVCQLKQEIELLRNELQRAEGELE 172
+ + + + S+LE +L +E+ L ++ ELE
Sbjct: 881 ER-ASLEEALALLRSELE--ELSEELRELESKRSELRRELE 918
Score = 29.3 bits (66), Expect = 1.8
Identities = 22/104 (21%), Positives = 47/104 (45%), Gaps = 5/104 (4%)
Query: 71 YRQKESSQQHLRRMMKDMEGLQRAELDLANLQKELERARQEQENAASEKIK--LERRLQE 128
Q S + R+ +E L+ LQ+E+E ++ E A ++++ LE +E
Sbjct: 392 ELQIASLNNEIERLEARLERLEDR---RERLQQEIEELLKKLEEAELKELQAELEELEEE 448
Query: 129 HQALQGDASDLKSSSAFSDLEVCQLKQEIELLRNELQRAEGELE 172
+ LQ + L+ + E+ + +Q ++ EL + + L+
Sbjct: 449 LEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLD 492
Score = 28.1 bits (63), Expect = 4.8
Identities = 18/103 (17%), Positives = 46/103 (44%), Gaps = 9/103 (8%)
Query: 73 QKESSQQHLRRMMKDMEGLQRAELDLANLQKELERARQE-QENAASEKIKLERRLQEHQA 131
++ S ++ L + ++E L +L + + EL R +E +E A +++LE
Sbjct: 881 ERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDN 940
Query: 132 LQGDAS--------DLKSSSAFSDLEVCQLKQEIELLRNELQR 166
LQ S + ++ + + + ++ ++ L N+++
Sbjct: 941 LQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKIKE 983
Score = 27.3 bits (61), Expect = 7.6
Identities = 19/88 (21%), Positives = 38/88 (43%), Gaps = 4/88 (4%)
Query: 89 EGLQRAELDLANLQKELERARQEQENAASEKIKLERRLQ----EHQALQGDASDLKSSSA 144
E L+ AE +LA + E+E + E E L L E L +A++L+
Sbjct: 768 ERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLE 827
Query: 145 FSDLEVCQLKQEIELLRNELQRAEGELE 172
+ + ++ +E L +++ ++E
Sbjct: 828 SLERRIAATERRLEDLEEQIEELSEDIE 855
Score = 26.9 bits (60), Expect = 9.7
Identities = 37/216 (17%), Positives = 80/216 (37%), Gaps = 23/216 (10%)
Query: 6 MAEKQLQQAREACEKLRKKRSSLVGAFVSTHGKSIDDVDRNSTSHVKDYILGTLILIALT 65
K+L++ E E+LRK+ L + D+ R + + LT
Sbjct: 702 ELRKELEELEEELEQLRKELEELSRQISALR----KDLARLEAEVEQLEERIAQLSKELT 757
Query: 66 ICWYVYRQKESSQQHLRRMMKDMEGLQRAELDLANLQKELERARQEQENAASEKIKLERR 125
+ ++ R+ + E L AE ++ L+ ++E+ ++E + +L
Sbjct: 758 ------ELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAE 811
Query: 126 LQEHQA----LQGDASDLKSSSAFSDLEVCQLKQEIELLRNELQRAEGELEDRCWAPPPG 181
L L+ L+ A ++ + L+++IE L +++ E+E+
Sbjct: 812 LTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEE-LEELIE- 869
Query: 182 LQHWLQLTHEIENKAYVKKKLMAEKQLQQAREARFD 217
E E +A + ++ E+ L R +
Sbjct: 870 -------ELESELEALLNERASLEEALALLRSELEE 898
>gnl|CDD|234501 TIGR04211, SH3_and_anchor, SH3 domain protein. Members of this
protein family have a signal peptide, a strongly
conserved SH3 domain, a variable region, and then a
C-terminal hydrophobic transmembrane alpha helix region.
Length = 198
Score = 38.1 bits (89), Expect = 0.001
Identities = 29/102 (28%), Positives = 52/102 (50%), Gaps = 4/102 (3%)
Query: 75 ESSQQHLRRMMKDMEGLQ--RAEL--DLANLQKELERARQEQENAASEKIKLERRLQEHQ 130
S+++ L + +++ LQ AEL LA LQ+E + +QE +E +L++ L +
Sbjct: 62 PSARERLPELQQELAELQEELAELQEQLAELQQENQELKQELSTLEAELERLQKELARIK 121
Query: 131 ALQGDASDLKSSSAFSDLEVCQLKQEIELLRNELQRAEGELE 172
L +A +L + E+ +LKQE E L E +R + +
Sbjct: 122 QLSANAIELDEENRELREELAELKQENEALEAENERLQENEQ 163
Score = 34.6 bits (80), Expect = 0.018
Identities = 25/90 (27%), Positives = 45/90 (50%), Gaps = 7/90 (7%)
Query: 91 LQRAELDLANLQKELERARQEQENAASEKIKLERRL----QEHQALQGDASDLKSSSAFS 146
L + +LA LQ+EL +++ E +L++ L E + LQ + + +K SA +
Sbjct: 68 LPELQQELAELQEELAELQEQLAELQQENQELKQELSTLEAELERLQKELARIKQLSANA 127
Query: 147 ---DLEVCQLKQEIELLRNELQRAEGELED 173
D E +L++E+ L+ E + E E E
Sbjct: 128 IELDEENRELREELAELKQENEALEAENER 157
Score = 30.0 bits (68), Expect = 0.79
Identities = 14/64 (21%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
Query: 73 QKESSQQHLRRMMKDMEGLQRAELDLANLQKELERARQEQENAASEKIKLE---RRLQEH 129
+ + + L R+ K++ +++ + L +E R+E E LE RLQE+
Sbjct: 102 ELSTLEAELERLQKELARIKQLSANAIELDEENRELREELAELKQENEALEAENERLQEN 161
Query: 130 QALQ 133
+ +
Sbjct: 162 EQRR 165
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC,
primarily archaeal type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing and
segregating chromosomes for partition. SMC proteins are
found in bacteria, archaea, and eukaryotes. It is found
in a single copy and is homodimeric in prokaryotes, but
six paralogs (excluded from this family) are found in
eukarotes, where SMC proteins are heterodimeric. This
family represents the SMC protein of archaea and a few
bacteria (Aquifex, Synechocystis, etc); the SMC of other
bacteria is described by TIGR02168. The N- and
C-terminal domains of this protein are well conserved,
but the central hinge region is skewed in composition
and highly divergent [Cellular processes, Cell division,
DNA metabolism, Chromosome-associated proteins].
Length = 1164
Score = 37.7 bits (88), Expect = 0.004
Identities = 25/111 (22%), Positives = 47/111 (42%), Gaps = 8/111 (7%)
Query: 72 RQKESSQQHLRRMMKDMEG-LQRAELDLANLQKELERARQEQENAASEKIKLERRLQEHQ 130
E S R ++D E L + E ++ L E+E +E E + KL E +
Sbjct: 304 ASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELK 363
Query: 131 A----LQGDASDLKSSSAFSDLEVCQLKQEIELL---RNELQRAEGELEDR 174
L+ + ++ A + E+ ++++E L NEL+R L++
Sbjct: 364 EELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEE 414
Score = 36.6 bits (85), Expect = 0.008
Identities = 27/98 (27%), Positives = 52/98 (53%), Gaps = 7/98 (7%)
Query: 81 LRRMMKDMEGLQRAELDLANLQKELERARQEQENAASE----KIKLERRLQEHQALQGDA 136
L+R+ + +EGL+R +L++LQ EL R + + E K+ +E + L+ +
Sbjct: 676 LQRLRERLEGLKR---ELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEE 732
Query: 137 SDLKSSSAFSDLEVCQLKQEIELLRNELQRAEGELEDR 174
LK + ++ L+QEIE +++EL+ E +E+
Sbjct: 733 EKLKERLEELEEDLSSLEQEIENVKSELKELEARIEEL 770
Score = 27.7 bits (62), Expect = 6.5
Identities = 25/108 (23%), Positives = 43/108 (39%), Gaps = 20/108 (18%)
Query: 72 RQKESSQQHLRRMMKDMEGLQRAELDLANLQKELERARQEQ-------ENAASEKIKLER 124
R+ ++ L R+ E LQR +LA+L + + E+ A E K E
Sbjct: 399 REINELKRELDRLQ---EELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEW 455
Query: 125 RLQEHQALQGDASDLKSSSAFSDLEVCQLKQEIELLRNELQRAEGELE 172
+L++ A E+ LK+E + + EL + + EL
Sbjct: 456 KLEQLAADLSKYEQ----------ELYDLKEEYDRVEKELSKLQRELA 493
>gnl|CDD|235461 PRK05431, PRK05431, seryl-tRNA synthetase; Provisional.
Length = 425
Score = 36.2 bits (85), Expect = 0.009
Identities = 32/98 (32%), Positives = 46/98 (46%), Gaps = 14/98 (14%)
Query: 82 RRMMKDMEGLQRAELDLANLQKELERARQEQENAASEKIKLERRLQEHQALQGDASDLKS 141
R D++ L + + LQ ELE + E+ NA S++I +R E DA L +
Sbjct: 21 RGFPLDVDELLELDEERRELQTELEELQAER-NALSKEIGQAKRKGE------DAEALIA 73
Query: 142 SSAFSDLEVCQLKQEIELLRNELQRAEGELEDRCWAPP 179
EV +LK+EI+ L EL E ELE+ P
Sbjct: 74 -------EVKELKEEIKALEAELDELEAELEELLLRIP 104
>gnl|CDD|177954 PLN02320, PLN02320, seryl-tRNA synthetase.
Length = 502
Score = 35.7 bits (82), Expect = 0.013
Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 100 NLQKELERARQEQENAASEKIKLERRLQEHQALQGDASDLKSSSAFSDLEVCQLKQEIEL 159
LQKE+ER R E+ NA + K+K + E QAL + +LK + ++ +L E++L
Sbjct: 104 ALQKEVERLRAER-NAVANKMKGKLEPSERQALVEEGKNLKEGLVTLEEDLVKLTDELQL 162
>gnl|CDD|114015 pfam05266, DUF724, Protein of unknown function (DUF724). This
family contains several uncharacterized proteins found
in Arabidopsis thaliana and other plants. This region is
often found associated with Agenet domains and may
contain coiled-coil.
Length = 190
Score = 34.7 bits (80), Expect = 0.018
Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 3/82 (3%)
Query: 97 DLANLQKELERARQEQENAASEKIKLERRLQEHQALQGDASDLKSSSAFSDLEVCQLKQE 156
+ L+KE+ ++ SE +LER++ E Q + K + D E+ +LK E
Sbjct: 111 ERKGLEKEIAEKEISRQELDSEIAELERKILELQRQAALLKEKKEA---EDKEIARLKSE 167
Query: 157 IELLRNELQRAEGELEDRCWAP 178
++ EL AE E + AP
Sbjct: 168 ASKIKQELVDAELEFQTTAAAP 189
>gnl|CDD|217817 pfam03961, DUF342, Protein of unknown function (DUF342). This
family of bacterial proteins has no known function. The
proteins are in the region of 500-600 amino acid
residues in length.
Length = 450
Score = 35.3 bits (82), Expect = 0.018
Identities = 18/83 (21%), Positives = 35/83 (42%), Gaps = 2/83 (2%)
Query: 94 AELDLANLQKELERARQEQENAASEKIKLERRLQEHQALQGDASDLKSSSAFSDLEVC-- 151
+D L++EL+ +E + E K+++ L++ + L
Sbjct: 325 VGVDFPELKEELKELEEELKELEEELEKIKKLLKKLPKKARGQLPPEKREQLEKLLETKE 384
Query: 152 QLKQEIELLRNELQRAEGELEDR 174
+L +E+E L EL+ + ELE
Sbjct: 385 KLSEELEELEEELKELKEELESL 407
>gnl|CDD|236892 PRK11281, PRK11281, hypothetical protein; Provisional.
Length = 1113
Score = 34.9 bits (81), Expect = 0.032
Identities = 20/99 (20%), Positives = 47/99 (47%), Gaps = 11/99 (11%)
Query: 73 QKESSQQHLRRMMKDMEGLQRAELDLANLQKELERARQEQENAASEKIKLERRLQEHQAL 132
+ + QQ L + + ++ + R + + L+++L +A + A + L +AL
Sbjct: 57 EDKLVQQDLEQTLALLDKIDRQKEETEQLKQQLAQAPAKLRQA-------QAEL---EAL 106
Query: 133 QGDASDLKSSSAFSDLEVCQLKQEIELLRNELQRAEGEL 171
+ D + ++ S L + QL+ + ++LQ A+ +L
Sbjct: 107 KDDNDE-ETRETLSTLSLRQLESRLAQTLDQLQNAQNDL 144
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and
chromosome partitioning].
Length = 1163
Score = 33.9 bits (78), Expect = 0.061
Identities = 28/87 (32%), Positives = 47/87 (54%), Gaps = 4/87 (4%)
Query: 91 LQRAELDLANLQKELERARQEQENAASEKIKLERRLQE----HQALQGDASDLKSSSAFS 146
L+ E +LA L+ +LE+ +E ++ +E LE L+E + L+ +LK A
Sbjct: 669 LKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAAL 728
Query: 147 DLEVCQLKQEIELLRNELQRAEGELED 173
+ E+ QL+ +E L EL+ E ELE+
Sbjct: 729 EEELEQLQSRLEELEEELEELEEELEE 755
Score = 33.1 bits (76), Expect = 0.13
Identities = 29/105 (27%), Positives = 52/105 (49%), Gaps = 4/105 (3%)
Query: 72 RQKESSQQHLRRMMKDMEGLQRAELDLANLQKELERARQEQENAASEKIKLERRLQE--- 128
+E +Q R+ + E L+ E +L LQ+ LE +E E+ KL+ ++E
Sbjct: 727 ALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEELEE 786
Query: 129 -HQALQGDASDLKSSSAFSDLEVCQLKQEIELLRNELQRAEGELE 172
QALQ + +L+ ++ + L++E+E L +R E E+E
Sbjct: 787 KRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIE 831
Score = 32.0 bits (73), Expect = 0.26
Identities = 28/88 (31%), Positives = 48/88 (54%), Gaps = 4/88 (4%)
Query: 91 LQRAELDLANLQKELERARQEQENAASEKIKLERRLQE----HQALQGDASDLKSSSAFS 146
L+ E +L+ L++ELE ++E E A E +L+ L+E + LQ + +LK
Sbjct: 241 LEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEEL 300
Query: 147 DLEVCQLKQEIELLRNELQRAEGELEDR 174
+ E+ L++ +E L NEL+ E LE+
Sbjct: 301 EGEISLLRERLEELENELEELEERLEEL 328
Score = 31.6 bits (72), Expect = 0.33
Identities = 32/108 (29%), Positives = 54/108 (50%), Gaps = 5/108 (4%)
Query: 72 RQKESSQQHLRRMMKDMEGLQRAELDLANLQKELERARQEQENAASEK-IKLERRLQE-- 128
+ E ++ L + + +E L+ + L +ELE+ E E A E KL L+E
Sbjct: 316 NELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELE 375
Query: 129 --HQALQGDASDLKSSSAFSDLEVCQLKQEIELLRNELQRAEGELEDR 174
+AL+ + ++L++ A E+ +LK+EIE L L+R LED
Sbjct: 376 ELFEALREELAELEAELAEIRNELEELKREIESLEERLERLSERLEDL 423
Score = 29.3 bits (66), Expect = 1.9
Identities = 20/87 (22%), Positives = 45/87 (51%), Gaps = 4/87 (4%)
Query: 91 LQRAELDLANLQKELERARQEQENAASEKIKLERRLQEHQ----ALQGDASDLKSSSAFS 146
+R E ++ L++E+E ++ + E +LE+ L+E + L+ + +L+
Sbjct: 823 RERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKEL 882
Query: 147 DLEVCQLKQEIELLRNELQRAEGELED 173
+ E +L++E+ L +EL + E+E
Sbjct: 883 EEEKEELEEELRELESELAELKEEIEK 909
Score = 29.3 bits (66), Expect = 1.9
Identities = 22/85 (25%), Positives = 44/85 (51%), Gaps = 3/85 (3%)
Query: 89 EGLQRAELDLANLQKELERARQEQENAASEKIKLERRLQEHQALQGDASDLKSSSAFSDL 148
E L E +LA ++ ELE ++E E+ +L RL++ L+ + +L++
Sbjct: 383 EELAELEAELAEIRNELEELKREIESLEERLERLSERLED---LKEELKELEAELEELQT 439
Query: 149 EVCQLKQEIELLRNELQRAEGELED 173
E+ +L +E+E L +L+ L++
Sbjct: 440 ELEELNEELEELEEQLEELRDRLKE 464
Score = 28.9 bits (65), Expect = 2.4
Identities = 27/91 (29%), Positives = 47/91 (51%), Gaps = 7/91 (7%)
Query: 91 LQRAELDLANLQKELERARQEQENAASEKIKLERRL----QEHQALQGDASDLKSSSAFS 146
Q + +L L++ELE A + + E LE+R QE + L+ + +L+
Sbjct: 788 RQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDEL 847
Query: 147 DLEVCQLKQEIELLRNELQRAE---GELEDR 174
+ E+ +L++E+E L+ EL+ E ELED
Sbjct: 848 EEELEELEKELEELKEELEELEAEKEELEDE 878
Score = 28.9 bits (65), Expect = 2.9
Identities = 27/159 (16%), Positives = 69/159 (43%), Gaps = 21/159 (13%)
Query: 68 WYVYRQKESSQQHLRRMMKDMEGLQRAELDLANLQKELERARQEQENAASEKIKLERRLQ 127
+ + + ++ L + +++ L+ +L +E E+ +E ++ E + LQ
Sbjct: 228 ALLLAKLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQ 287
Query: 128 --------EHQALQGDASDLKSSSAFSDLEVCQLKQEIELLRNELQRAEGELEDRCWAPP 179
E + L+G+ S L+ + E+ +L++ +E L+ +++ + ELE+R
Sbjct: 288 EELLELKEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEER----- 342
Query: 180 PGLQHWLQLTHEIENKAYVKKKLMAEKQLQQAREARFDR 218
T E + + + A+++L++ A +
Sbjct: 343 --------ETLLEELEQLLAELEEAKEELEEKLSALLEE 373
>gnl|CDD|226809 COG4372, COG4372, Uncharacterized protein conserved in bacteria
with the myosin-like domain [Function unknown].
Length = 499
Score = 33.5 bits (76), Expect = 0.079
Identities = 39/153 (25%), Positives = 68/153 (44%), Gaps = 13/153 (8%)
Query: 73 QKESSQQHLRRMMKDMEGLQRAELDLANLQKELERARQEQENAASEKIKLERRLQ----E 128
++E+ +Q L ++ L +A+ +LA L K+ + + + A ++ +LE + Q
Sbjct: 117 EREAVRQELAAARQN---LAKAQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQAS 173
Query: 129 HQALQGDASDLKSSSAFSDLEVCQLKQEIELL---RNELQRAEGELEDRCWAPPPGLQHW 185
+ LQ A+ LKS L Q++QE + L N Q EL R A Q
Sbjct: 174 QKQLQASATQLKSQVLDLKLRSAQIEQEAQNLATRANAAQARTEELARRAAAAQQTAQAI 233
Query: 186 LQLTHEIENKAYVKKKLMAEKQLQQAREARFDR 218
Q +I KA +++ A + + RE + R
Sbjct: 234 QQRDAQISQKA---QQIAARAEQIRERERQLQR 263
Score = 29.2 bits (65), Expect = 1.8
Identities = 20/103 (19%), Positives = 43/103 (41%), Gaps = 1/103 (0%)
Query: 71 YRQKESSQQHLRRMMKDMEG-LQRAELDLANLQKELERARQEQENAASEKIKLERRLQEH 129
RQ E+ Q L+ K ++ + + + +L+ + QE +N A+ + R +E
Sbjct: 160 RRQLEAQAQSLQASQKQLQASATQLKSQVLDLKLRSAQIEQEAQNLATRANAAQARTEEL 219
Query: 130 QALQGDASDLKSSSAFSDLEVCQLKQEIELLRNELQRAEGELE 172
A + D ++ Q Q+I +++ E +L+
Sbjct: 220 ARRAAAAQQTAQAIQQRDAQISQKAQQIAARAEQIRERERQLQ 262
>gnl|CDD|233547 TIGR01730, RND_mfp, RND family efflux transporter, MFP subunit.
This model represents the MFP (membrane fusion protein)
component of the RND family of transporters. RND refers
to Resistance, Nodulation, and cell Division. It is, in
part, a subfamily of pfam00529 (Pfam release 7.5) but
hits substantial numbers of proteins missed by that
model. The related HlyD secretion protein, for which
pfam00529 is named, is outside the scope of this model.
Attributed functions imply outward transport. These
functions include nodulation, acriflavin resistance,
heavy metal efflux, and multidrug resistance proteins.
Most members of this family are found in Gram-negative
bacteria. The proposed function of MFP proteins is to
bring the inner and outer membranes together and enable
transport to the outside of the outer membrane. Note,
however, that a few members of this family are found in
Gram-positive bacteria, where there is no outer membrane
[Transport and binding proteins, Unknown substrate].
Length = 322
Score = 33.1 bits (76), Expect = 0.082
Identities = 16/54 (29%), Positives = 23/54 (42%)
Query: 91 LQRAELDLANLQKELERARQEQENAASEKIKLERRLQEHQALQGDASDLKSSSA 144
L AE L Q+ ERA + + A + L+ +A Q D K+S A
Sbjct: 73 LAAAEAQLELAQRSFERAERLVKRNAVSQADLDDAKAAVEAAQADLEAAKASLA 126
>gnl|CDD|221489 pfam12252, SidE, Dot/Icm substrate protein. This family of proteins
is found in bacteria. Proteins in this family are
typically between 397 and 1543 amino acids in length.
This family is the SidE protein in the Dot/Icm pathway of
Legionella pneumophila bacteria. There is little
literature describing the family.
Length = 1443
Score = 32.5 bits (74), Expect = 0.16
Identities = 30/111 (27%), Positives = 53/111 (47%), Gaps = 24/111 (21%)
Query: 87 DMEGLQRAELDLANLQKELERARQEQ--ENAASEKI------KLERRLQEHQALQGDASD 138
+++ +++A +L NLQ+E+ R E+ + ++K+ KLE++LQ DA
Sbjct: 1126 NLDVVKKAISNLNNLQQEVTLLRNEKIRMHTGTDKVDFSDIEKLEKQLQVIDTKLADAYL 1185
Query: 139 LKSSSAFSDLE------VCQLK----------QEIELLRNELQRAEGELED 173
L+ + S LE +LK +IE+LRNE + G +D
Sbjct: 1186 LEVTKQISALEKEKPKNQSELKSKIAKFFDTTADIEVLRNERIKKHGSSKD 1236
>gnl|CDD|234173 TIGR03346, chaperone_ClpB, ATP-dependent chaperone ClpB. Members
of this protein family are the bacterial ATP-dependent
chaperone ClpB. This protein belongs to the AAA family,
ATPases associated with various cellular activities
(pfam00004). This molecular chaperone does not act as a
protease, but rather serves to disaggregate misfolded
and aggregated proteins [Protein fate, Protein folding
and stabilization].
Length = 852
Score = 32.6 bits (75), Expect = 0.16
Identities = 25/77 (32%), Positives = 42/77 (54%), Gaps = 3/77 (3%)
Query: 95 ELDLANLQKELERARQEQENAASEKIKLERRLQEHQALQGDASDLKSSSAFSDLEV---C 151
ELD +Q E+ER ++E + K +LE +E L+ + +DL+ +
Sbjct: 409 ELDRRIIQLEIEREALKKEKDEASKERLEDLEKELAELEEEYADLEEQWKAEKAAIQGIQ 468
Query: 152 QLKQEIELLRNELQRAE 168
Q+K+EIE +R EL++AE
Sbjct: 469 QIKEEIEQVRLELEQAE 485
>gnl|CDD|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division
and chromosome partitioning].
Length = 420
Score = 32.4 bits (74), Expect = 0.18
Identities = 16/98 (16%), Positives = 38/98 (38%), Gaps = 10/98 (10%)
Query: 78 QQHLRRMMKDMEGLQRAELDLANLQKELERARQEQENA----ASEKIKLERRLQEHQALQ 133
+ ++ + LA ++ E+ + E +++ KL + L+E +
Sbjct: 156 NPARAERIDALKATLK---QLAAVRAEIAAEQAELTTLLSEQRAQQAKLAQLLEERKKTL 212
Query: 134 GDASDLKSSSAFSDLEVCQLKQEIELLRNELQRAEGEL 171
+ L S + ++ +L+ L+NE+ AE
Sbjct: 213 ---AQLNSELSADQKKLEELRANESRLKNEIASAEAAA 247
>gnl|CDD|181619 PRK09039, PRK09039, hypothetical protein; Validated.
Length = 343
Score = 31.5 bits (72), Expect = 0.28
Identities = 24/101 (23%), Positives = 41/101 (40%), Gaps = 19/101 (18%)
Query: 87 DMEGLQRA-----ELDLANLQKELERARQEQENAASEKIKLERRLQEHQALQGDASDLK- 140
D+ L+R + +ANL+ L A E+ + +L +G A +L
Sbjct: 67 DLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQALLAELAGAGAA---AEGRAGELAQ 123
Query: 141 --------SSSAFSDLEVCQLKQEIELLRNELQRAEGELED 173
S+ A + +E+ L Q+I LR +L E L+
Sbjct: 124 ELDSEKQVSARALAQVEL--LNQQIAALRRQLAALEAALDA 162
>gnl|CDD|222613 pfam14235, DUF4337, Domain of unknown function (DUF4337). This
family of proteins is functionally uncharacterized. This
family of proteins is found in bacteria. Proteins in
this family are typically between 187 and 201 amino
acids in length. There is a single completely conserved
residue Q that may be functionally important.
Length = 158
Score = 31.0 bits (71), Expect = 0.29
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 71 YRQKESSQQHLRRMMKDMEGLQRAELDLANLQKELERARQEQENAASEKIKLERRLQE 128
+ Q +S +QHL + D+ L+ A A LQ ++ R ++E+ SE +LE + +E
Sbjct: 43 FYQAKSIKQHLAELAADLLELEAA-APRAELQAKIARYKKEKARYRSEAKELEAKAKE 99
>gnl|CDD|218636 pfam05557, MAD, Mitotic checkpoint protein. This family consists
of several eukaryotic mitotic checkpoint (Mitotic arrest
deficient or MAD) proteins. The mitotic spindle
checkpoint monitors proper attachment of the bipolar
spindle to the kinetochores of aligned sister chromatids
and causes a cell cycle arrest in prometaphase when
failures occur. Multiple components of the mitotic
spindle checkpoint have been identified in yeast and
higher eukaryotes. In S.cerevisiae, the existence of a
Mad1-dependent complex containing Mad2, Mad3, Bub3 and
Cdc20 has been demonstrated.
Length = 722
Score = 31.4 bits (71), Expect = 0.34
Identities = 21/95 (22%), Positives = 48/95 (50%), Gaps = 4/95 (4%)
Query: 71 YRQKESSQQHLRRMMKDMEGLQ----RAELDLANLQKELERARQEQENAASEKIKLERRL 126
Q + +++ + R+ D+ +Q A+ +L L+ ELE R++ E E + E++L
Sbjct: 156 EDQLKEAKESISRIKNDLSEMQCRAQNADTELKLLESELEELREQLEECQKELAEAEKKL 215
Query: 127 QEHQALQGDASDLKSSSAFSDLEVCQLKQEIELLR 161
Q + Q ++D + E+ + +Q+ E+++
Sbjct: 216 QSLTSEQASSADNSVKIKHLEEELKRYEQDAEVVK 250
>gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584). This
protein is found in bacteria and eukaryotes. Proteins in
this family are typically between 943 to 1234 amino
acids in length. This family contains a P-loop motif
suggesting it is a nucleotide binding protein. It may be
involved in replication.
Length = 1198
Score = 31.6 bits (72), Expect = 0.34
Identities = 23/128 (17%), Positives = 47/128 (36%), Gaps = 7/128 (5%)
Query: 89 EGLQRAELDLANLQKELERARQEQENAASEKIKLERRLQEHQALQGDASD--LKSSSAFS 146
E L +A +L ++ AR + A + +RLQ Q D + + +
Sbjct: 628 EQLVQANAELEEQKRAEAEARTALKQARLDL----QRLQNEQQSLKDKLELAIAERKQQA 683
Query: 147 DLEVCQLKQEIELLRNELQRAEGEL-EDRCWAPPPGLQHWLQLTHEIENKAYVKKKLMAE 205
+ ++ QL +++ L + Q L +D L W + E++N+ +
Sbjct: 684 ETQLRQLDAQLKQLLEQQQAFLEALKDDFRELRTERLAKWQVVEGELDNQLAQLSAAIEA 743
Query: 206 KQLQQARE 213
+ Q
Sbjct: 744 ARTQAKAR 751
Score = 27.3 bits (61), Expect = 7.7
Identities = 27/155 (17%), Positives = 62/155 (40%), Gaps = 18/155 (11%)
Query: 73 QKESSQQHLRRMMKDMEGLQRAELDLANLQKELERARQEQENAASEKIKLERRLQEHQ-- 130
Q + + ++ L R D +K+LE+ R+ E + +L R L++
Sbjct: 824 QLRELESSAEELQQE---LTRLIKDTKLRRKKLEQERKALEKQLDQLDELLRGLRDEMRQ 880
Query: 131 ----ALQGDASDLKSSSAFSDLEVCQLKQEIELLRNELQ----RAEGELEDRCWAPPPGL 182
+A+ + S + ++ + K++ + L +L+ R +G ++D +
Sbjct: 881 LAELKEPANANQAEGSISERLDQLEEFKRKRKRLSGDLKKFLERFDGVIKDHSGSGL--Y 938
Query: 183 QHWLQLTHEIENKAYVKKKLMAEKQLQQAREARFD 217
+ W +L N + + K + ++L E D
Sbjct: 939 ETWQKL---RSNDSTLGDKGIDYRELFPYLEELLD 970
>gnl|CDD|237178 PRK12705, PRK12705, hypothetical protein; Provisional.
Length = 508
Score = 31.6 bits (72), Expect = 0.36
Identities = 29/156 (18%), Positives = 59/156 (37%), Gaps = 24/156 (15%)
Query: 59 LILIALTICWYV----YRQKESSQQHLRRMMKDMEGLQRAELDLANLQKELERARQEQEN 114
L+LI L + V RQ+ + + E ++ E L ++ L R R +Q
Sbjct: 11 LLLIGLLLGVLVVLLKKRQRLAKEAERILQEAQKEAEEKLEAALLEAKELLLRERNQQRQ 70
Query: 115 AASEKIKLERRLQEHQALQGDASDLKSSSAFSDLEVCQLKQEIELLRNELQRAEGELEDR 174
A + + +R +E + + D ++ +++ L N+L+ E L R
Sbjct: 71 EARREREELQREEERLVQKEEQLDARAE-------------KLDNLENQLEEREKALSAR 117
Query: 175 CWAPPPGLQHWLQLTHEIENKAYVKKKLMAEKQLQQ 210
+L +++N+ Y L E+ +
Sbjct: 118 -------ELELEELEKQLDNELYRVAGLTPEQARKL 146
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication,
recombination, and repair].
Length = 908
Score = 31.7 bits (72), Expect = 0.36
Identities = 31/157 (19%), Positives = 60/157 (38%), Gaps = 9/157 (5%)
Query: 71 YRQKESSQQHLRRMMKDMEGLQRAELD-LANLQKELERARQEQENAASEKIKLERRLQEH 129
+ ++ + + + ++ EL L L +ELE + E E +LE L+
Sbjct: 251 LEELKARLLEIESLELEALKIREEELRELERLLEELEEKIERLEELEREIEELEEELEGL 310
Query: 130 QALQGDASDLKS--SSAFSDLE-----VCQLKQEIELLRNELQRAEGELEDRCWAPPPGL 182
+AL + +L S LE + +L+ E+E L E LE+R L
Sbjct: 311 RALLEELEELLEKLKSLEERLEKLEEKLEKLESELEELAEEKNELAKLLEERLKELEERL 370
Query: 183 QHW-LQLTHEIENKAYVKKKLMAEKQLQQAREARFDR 218
+ +L +E +++ + K+ A +
Sbjct: 371 EELEKELEKALERLKQLEEAIQELKEELAELSAALEE 407
Score = 29.0 bits (65), Expect = 2.5
Identities = 26/105 (24%), Positives = 43/105 (40%), Gaps = 7/105 (6%)
Query: 71 YRQKESSQQHLRRMMKDMEGLQRAELDLANLQKELERARQEQENAASEKIKLERRLQEHQ 130
R + L +K +E L L+++LE+ E E A EK +L + L+E
Sbjct: 310 LRALLEELEELLEKLKSLEE------RLEKLEEKLEKLESELEELAEEKNELAKLLEERL 363
Query: 131 ALQGDASDLKSSSAFSDLEV-CQLKQEIELLRNELQRAEGELEDR 174
+ + LE QL++ I+ L+ EL LE+
Sbjct: 364 KELEERLEELEKELEKALERLKQLEEAIQELKEELAELSAALEEI 408
>gnl|CDD|218896 pfam06098, Radial_spoke_3, Radial spoke protein 3. This family
consists of several radial spoke protein 3 (RSP3)
sequences. Eukaryotic cilia and flagella present in
diverse types of cells perform motile, sensory, and
developmental functions in organisms from protists to
humans. They are centred by precisely organised,
microtubule-based structures, the axonemes. The axoneme
consists of two central singlet microtubules, called the
central pair, and nine outer doublet microtubules. These
structures are well-conserved during evolution. The
outer doublet microtubules, each composed of A and B
sub-fibres, are connected to each other by nexin links,
while the central pair is held at the centre of the
axoneme by radial spokes. The radial spokes are T-shaped
structures extending from the A-tubule of each outer
doublet microtubule to the centre of the axoneme. Radial
spoke protein 3 (RSP3), is present at the proximal end
of the spoke stalk and helps in anchoring the radial
spoke to the outer doublet. It is thought that radial
spokes regulate the activity of inner arm dynein through
protein phosphorylation and dephosphorylation.
Length = 288
Score = 30.8 bits (70), Expect = 0.45
Identities = 18/78 (23%), Positives = 34/78 (43%), Gaps = 3/78 (3%)
Query: 72 RQKESSQQHLRRMMKDMEGLQRAELDLANLQKELERARQEQENAASEKIKLERRLQEHQA 131
RQ++ + R ++ QR E ++E ER +++ + + + ++
Sbjct: 158 RQQQRQFEQRRNA--ELAETQRLEEAERRRREEKERRKKQDKERKQREKETAEKIAARAF 215
Query: 132 LQGDASDLKSSSAFSDLE 149
QG SDL + FS LE
Sbjct: 216 AQGYLSDLV-PNVFSSLE 232
>gnl|CDD|234527 TIGR04263, SasC_Mrp_aggreg, SasC/Mrp/FmtB intercellular aggregation
domain. This domain, about 375 amino acids long on
average, occurs only in Staphylococcus and
Streptococcus. It occurs as a non-repetitive N-terminal
domain of LPXTG-anchored surface proteins, including
SasC, Mrp, and FmtB. This region in SasC was shown to be
involved in cell aggregation and biofilm formation,
which may explain the methicillin resistance seen for
Mrp and FmtB.
Length = 366
Score = 30.8 bits (70), Expect = 0.49
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 36 HGKSIDDVDRNSTSHVKDYILGT 58
G +D+V NS S++ Y+ T
Sbjct: 205 GGGFVDNVGVNSGSYLVSYVKQT 227
>gnl|CDD|235316 PRK04863, mukB, cell division protein MukB; Provisional.
Length = 1486
Score = 30.7 bits (70), Expect = 0.62
Identities = 16/90 (17%), Positives = 34/90 (37%), Gaps = 3/90 (3%)
Query: 77 SQQHLRRMMKDMEGLQRAELDLANLQKELERARQEQENAASEKIKLERRLQEHQALQGDA 136
Q LR + ++E R + L E + + + E LE+ +E +A
Sbjct: 514 QLQQLRMRLSELEQRLRQQQRAERLLAEFCKRLGKNLDDEDE---LEQLQEELEARLESL 570
Query: 137 SDLKSSSAFSDLEVCQLKQEIELLRNELQR 166
S+ S + + + Q ++++ L
Sbjct: 571 SESVSEARERRMALRQQLEQLQARIQRLAA 600
Score = 28.0 bits (63), Expect = 4.6
Identities = 13/54 (24%), Positives = 27/54 (50%)
Query: 78 QQHLRRMMKDMEGLQRAELDLANLQKELERARQEQENAASEKIKLERRLQEHQA 131
QQ ++ + + + +L N + LE + +++ A E + LE++L QA
Sbjct: 417 QQAVQALERAKQLCGLPDLTADNAEDWLEEFQAKEQEATEELLSLEQKLSVAQA 470
Score = 28.0 bits (63), Expect = 5.7
Identities = 14/64 (21%), Positives = 26/64 (40%), Gaps = 2/64 (3%)
Query: 72 RQKESSQQHLRRMMKDMEG-LQRAELDLANLQKELERARQEQENAASEKIKL-ERRLQEH 129
Q+ QQ R++ + L + D L++ E E+ + + ERR+
Sbjct: 526 EQRLRQQQRAERLLAEFCKRLGKNLDDEDELEQLQEELEARLESLSESVSEARERRMALR 585
Query: 130 QALQ 133
Q L+
Sbjct: 586 QQLE 589
Score = 27.2 bits (61), Expect = 8.6
Identities = 13/59 (22%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Query: 75 ESSQQHLRRMMKDM---EGLQRAELDLANLQKELERARQEQENAASEKIKLERRLQEHQ 130
+++ HL + + E ++R + DL L++ LE + E A ++ + E R + +
Sbjct: 331 QAASDHLNLVQTALRQQEKIERYQADLEELEERLEEQNEVVEEADEQQEENEARAEAAE 389
>gnl|CDD|234218 TIGR03459, crt_membr, carotene biosynthesis associated membrane
protein. This model represents a family of hydrophobic
and presumed membrane proteins found in the
Actinobacteria. The genes encoding these proteins are
syntenically associated with (found proximal to) genes
of carotene biosynthesis ususally including phytoene
synthase (crtB), phytoene dehydrogenase (crtI) and
geranylgeranyl pyrophosphate synthase (ispA).
Length = 470
Score = 30.1 bits (68), Expect = 0.82
Identities = 11/36 (30%), Positives = 19/36 (52%)
Query: 40 IDDVDRNSTSHVKDYILGTLILIALTICWYVYRQKE 75
DD+D N+ V I ++L+ L W+++R E
Sbjct: 352 NDDLDFNAVVDVIRPISMVIMLLGLVATWWLFRHDE 387
>gnl|CDD|216108 pfam00769, ERM, Ezrin/radixin/moesin family. This family of
proteins contain a band 4.1 domain (pfam00373), at their
amino terminus. This family represents the rest of these
proteins.
Length = 244
Score = 29.7 bits (67), Expect = 0.95
Identities = 27/103 (26%), Positives = 49/103 (47%), Gaps = 1/103 (0%)
Query: 72 RQKESSQQHLRRMMKDMEGLQRAELDLANLQKELERARQEQENAASEKIKLERRLQEHQA 131
+ E ++ +RR K++E + L+L K+ E Q E A E + RRL+E A
Sbjct: 12 ERMEQMEEDMRRAQKELEEYEETALELEEKLKQEEEEAQLLEKKADELEEENRRLEEEAA 71
Query: 132 LQ-GDASDLKSSSAFSDLEVCQLKQEIELLRNELQRAEGELED 173
+ L++ + EV +L++E E E ++ + EL +
Sbjct: 72 ASEEERERLEAEVDEATAEVAKLEEEREKKEAETRQLQQELRE 114
>gnl|CDD|172976 PRK14505, PRK14505, bifunctional photosynthetic reaction center
subunit L/M; Provisional.
Length = 643
Score = 30.0 bits (67), Expect = 0.96
Identities = 14/43 (32%), Positives = 23/43 (53%)
Query: 54 YILGTLILIALTICWYVYRQKESSQQHLRRMMKDMEGLQRAEL 96
++LG+ +L+A+ V K S+ MM + G QRA+L
Sbjct: 531 FLLGSTLLLAMHGATIVATSKWKSEMEFTEMMAEGPGTQRAQL 573
>gnl|CDD|213754 TIGR02971, heterocyst_DevB, ABC exporter membrane fusion protein,
DevB family. Members of this protein family are found
mostly in the Cyanobacteria, but also in the
Planctomycetes. DevB from Anabaena sp. strain PCC 7120
is partially characterized as a membrane fusion protein
of the DevBCA ABC exporter, probably a glycolipid
exporter, required for heterocyst formation. Most
Cyanobacteria have one member only, but Nostoc sp. PCC
7120 has seven members.
Length = 327
Score = 29.8 bits (67), Expect = 0.99
Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 5/74 (6%)
Query: 93 RAELDLANLQKELERARQEQENAASEKIKLERRLQEHQALQGDASDLKSSSAFSDLEVCQ 152
AELD+A Q + +AR Q A ++K ++ Q A+ L A + +
Sbjct: 54 TAELDVARTQLDEAKARLAQVRAGAKKGEIAA-----QRAARAAAKLFKDVAAQQATLNR 108
Query: 153 LKQEIELLRNELQR 166
L+ E+E + E+ R
Sbjct: 109 LEAELETAQREVDR 122
>gnl|CDD|236873 PRK11186, PRK11186, carboxy-terminal protease; Provisional.
Length = 667
Score = 29.9 bits (68), Expect = 1.1
Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 9/65 (13%)
Query: 77 SQQHLRRMMKDMEGLQRAELDLANLQKELER-------ARQEQENAASEKIKLERRLQEH 129
++H R+ KD E Q D+A + E ++ A +E+EN + +L RL E
Sbjct: 566 LKKHNARIAKDPE-FQYINEDIARYKAEKDKNIVSLNYAEREKENDEDDAKRLA-RLNER 623
Query: 130 QALQG 134
+G
Sbjct: 624 FKREG 628
>gnl|CDD|225288 COG2433, COG2433, Uncharacterized conserved protein [Function
unknown].
Length = 652
Score = 30.1 bits (68), Expect = 1.2
Identities = 37/201 (18%), Positives = 78/201 (38%), Gaps = 52/201 (25%)
Query: 47 STSHVKDYILGTLILIALTICWYVYRQKESSQQHLRRMMKDMEGLQRAELDLANL----- 101
S H +D AL + Y + + + R + ++ G+ + + L
Sbjct: 339 SDDHERD---------ALAAAYKAYLAYKPKLEKVERKLPEL-GIWKDVERIKALVIRGY 388
Query: 102 ----------QKELERA-RQEQENAASEKIKLERRLQEH----QALQGDASDLKSSSAFS 146
++E R +E E E+R+++ + L+ + S+LK
Sbjct: 389 PLAEALSKVKEEERPREKEGTEEEERREITVYEKRIKKLEETVERLEEENSELKR----- 443
Query: 147 DLEVCQLKQEIELLRNELQRAEGELEDRCWAPPPGLQHWLQLTHEIENK----AYVKKKL 202
E+ +LK+EIE L +EL+R E+ D+ ++ EI + ++K+L
Sbjct: 444 --ELEELKREIEKLESELERFRREVRDK-----------VRKDREIRARDRRIERLEKEL 490
Query: 203 MAEKQLQQAREARFDRGKCIY 223
+K+ + E + + +
Sbjct: 491 EEKKKRVEELERKLAELRKMR 511
>gnl|CDD|235668 PRK06007, fliF, flagellar MS-ring protein; Reviewed.
Length = 542
Score = 29.8 bits (68), Expect = 1.2
Identities = 18/77 (23%), Positives = 32/77 (41%), Gaps = 3/77 (3%)
Query: 55 ILGTLILIALTICWYVYR---QKESSQQHLRRMMKDMEGLQRAELDLANLQKELERARQE 111
L L+ L + ++V R + ++ L E E + A L+ EL +
Sbjct: 442 KLAAGALLILILIFFVLRPRLRPLLPEEELAEEEAAAEEAALEEDEEAALEVELSDDEEL 501
Query: 112 QENAASEKIKLERRLQE 128
+E A E++K E L+
Sbjct: 502 EEEKAEEELKYEDLLKR 518
>gnl|CDD|226654 COG4191, COG4191, Signal transduction histidine kinase regulating
C4-dicarboxylate transport system [Signal transduction
mechanisms].
Length = 603
Score = 30.0 bits (68), Expect = 1.2
Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 16/68 (23%)
Query: 107 RARQEQENAASEKIKLERRLQEHQALQGDASDLKSSSAFSDLEVCQLKQEIELLRN---E 163
RAR + +LERR++E A DL ++A +L+ EI
Sbjct: 321 RARLRLAELQEARAELERRVEERTA------DLTRANA-------RLQAEIAEREQAEAA 367
Query: 164 LQRAEGEL 171
L+RA+ EL
Sbjct: 368 LRRAQDEL 375
>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional.
Length = 520
Score = 29.7 bits (68), Expect = 1.3
Identities = 22/115 (19%), Positives = 44/115 (38%), Gaps = 34/115 (29%)
Query: 60 ILIALTICWYVYRQKESSQQHLRRMMKDMEGLQRAELDLANLQKELERARQEQENAASEK 119
+++ I ++V ++ ++ K+ E + A+ L +KE E ++E A E+
Sbjct: 14 LVVGAVIGYFVRKKIAEAKI------KEAE--EEAKRILEEAKKEAEAIKKEALLEAKEE 65
Query: 120 IKLERRLQEHQALQGDASDLKSSSAFSDLEVCQLKQEIELLRNELQRAEGELEDR 174
I R + ++E+ RNELQ+ E L +
Sbjct: 66 IHKLRN--------------------------EFEKELRERRNELQKLEKRLLQK 94
>gnl|CDD|224340 COG1422, COG1422, Predicted membrane protein [Function unknown].
Length = 201
Score = 29.2 bits (66), Expect = 1.3
Identities = 8/46 (17%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 87 DMEGLQRAELDLANLQKELERARQEQENAASEKIKLER-RLQEHQA 131
D E ++ + + QKE A++ + +K++ ++ + + Q
Sbjct: 70 DQEKMKELQKMMKEFQKEFREAQESGDMKKLKKLQEKQMEMMDDQR 115
>gnl|CDD|176454 cd01700, PolY_Pol_V_umuC, umuC subunit of DNA Polymerase V. umuC
subunit of Pol V. Pol V is a bacterial translesion
synthesis (TLS) polymerase that consists of the
heterotrimer of one umuC and two umuD subunits.
Translesion synthesis is a process that allows the
bypass of a variety of DNA lesions. TLS polymerases
lack proofreading activity and have low fidelity and low
processivity. They use damaged DNA as templates and
insert nucleotides opposite the lesions. Pol V, RecA,
single stranded DNA-binding protein, beta sliding clamp,
and gamma clamp loading complex are responsible for
inducing the SOS response in bacteria to repair
UV-induced DNA damage.
Length = 344
Score = 29.4 bits (67), Expect = 1.3
Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 6/65 (9%)
Query: 14 AREACEKLRKKRS--SLVGAFVSTHGKSIDDVDRNSTSHVKDY---ILGTLILIALTICW 68
A A EKLR+++S + F+ T G S S ++ Y ++ AL + +
Sbjct: 268 AERAAEKLRRQKSVARTISVFIGTSGFS-RQPKYYSATNTLPYPTNDTREIVKAALRLLY 326
Query: 69 YVYRQ 73
+YR
Sbjct: 327 AIYRP 331
>gnl|CDD|148614 pfam07106, TBPIP, Tat binding protein 1(TBP-1)-interacting protein
(TBPIP). This family consists of several eukaryotic
TBP-1 interacting protein (TBPIP) sequences. TBP-1 has
been demonstrated to interact with the human
immunodeficiency virus type 1 (HIV-1) viral protein Tat,
then modulate the essential replication process of HIV.
In addition, TBP-1 has been shown to be a component of
the 26S proteasome, a basic multiprotein complex that
degrades ubiquitinated proteins in an ATP-dependent
fashion. Human TBPIP interacts with human TBP-1 then
modulates the inhibitory action of human TBP-1 on
HIV-Tat-mediated transactivation.
Length = 169
Score = 28.8 bits (65), Expect = 1.5
Identities = 24/74 (32%), Positives = 39/74 (52%), Gaps = 4/74 (5%)
Query: 102 QKELERARQEQENAASEKIKLERRLQEHQALQGDASDLKSS--SAFSDLEVCQLKQEIEL 159
Q + E E+ N +I+ R +E Q L+ D S L+ S SDL +L++EI+
Sbjct: 63 QDQFELPSDEELNKLDMEIEELR--EEVQLLKQDCSTLEIELKSLTSDLTTEELQEEIQE 120
Query: 160 LRNELQRAEGELED 173
L+ E++ E +LE
Sbjct: 121 LKKEVREIEEKLES 134
>gnl|CDD|236942 PRK11637, PRK11637, AmiB activator; Provisional.
Length = 428
Score = 29.3 bits (66), Expect = 1.6
Identities = 21/90 (23%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Query: 86 KDMEGLQRAELDLANLQKELERARQEQENAASEKIKLERRL-QEHQALQGDASDLKSSSA 144
+ + L++ +LA + ELE + +Q+ E+ +++L Q + + L+SS
Sbjct: 170 ETIAELKQTREELAAQKAELEEKQSQQKTLLYEQQAQQQKLEQARNERKKTLTGLESSLQ 229
Query: 145 FSDLEVCQLKQEIELLRNELQRAEGELEDR 174
++ +L+ LR+ + RAE E + R
Sbjct: 230 KDQQQLSELRANESRLRDSIARAEREAKAR 259
>gnl|CDD|114011 pfam05262, Borrelia_P83, Borrelia P83/100 protein. This family
consists of several Borrelia P83/P100 antigen proteins.
Length = 489
Score = 29.6 bits (66), Expect = 1.6
Identities = 25/96 (26%), Positives = 51/96 (53%), Gaps = 7/96 (7%)
Query: 77 SQQHLRRMMKDMEGLQRAELDLANLQKELERARQEQENAASEKIKLERRLQEHQALQGDA 136
SQ+ +R + E L + ++D Q++ + A Q+NA ++ ++ ++ QE + L A
Sbjct: 208 SQEDAKRAQQLKEELDKKQIDADKAQQKADFA---QDNADKQRDEVRQKQQEAKNLPKPA 264
Query: 137 SDLKSSSAFSDLEVCQ-LKQEIELLRNELQRAEGEL 171
+SS D +V + K+EIE + E+++ + E
Sbjct: 265 ---DTSSPKEDKQVAENQKREIEKAQIEIKKNDEEA 297
Score = 26.9 bits (59), Expect = 9.9
Identities = 18/105 (17%), Positives = 45/105 (42%), Gaps = 5/105 (4%)
Query: 74 KESSQQHLRRMMKDMEGLQRAELDLANLQKELERARQEQEN----AASEKIKLERRLQEH 129
KE + K + A+ + + E+ + +QE +N A + K ++++ E+
Sbjct: 219 KEELDKKQIDADKAQQKADFAQDNADKQRDEVRQKQQEAKNLPKPADTSSPKEDKQVAEN 278
Query: 130 QALQGDASDLKSSSAFSDLEVCQLKQEIELLRNELQRAEGELEDR 174
Q + + + ++ + + + L+ E + +E E ED+
Sbjct: 279 QKREIEKAQIEIKKNDEEALKAK-DHKAFDLKQESKASEKEAEDK 322
>gnl|CDD|131526 TIGR02473, flagell_FliJ, flagellar export protein FliJ. Members of
this family are the FliJ protein found, in nearly every
case, in the midst of other flagellar biosynthesis genes
in bacgterial genomes. Typically the fliJ gene is found
adjacent to the gene for the flagellum-specific ATPase
FliI. Sequence scoring in the gray zone between trusted
and noise cutoffs include both probable FliJ proteins
and components of bacterial type III secretion systems.
Length = 141
Score = 28.4 bits (64), Expect = 1.7
Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 4/82 (4%)
Query: 93 RAELDLANLQKELERARQEQENAASEKIKLERRLQEHQALQGDASDLKSSSAFSDLEVCQ 152
+A+L+LA Q E ER + + + + E++ E A +L + F + Q
Sbjct: 17 QAKLELAKAQAEFERLETQLQQLIKYREEYEQQALEKVGAGTSALELSNYQRF----IRQ 72
Query: 153 LKQEIELLRNELQRAEGELEDR 174
L Q I+ + EL + E+E +
Sbjct: 73 LDQRIQQQQQELALLQQEVEAK 94
>gnl|CDD|217020 pfam02403, Seryl_tRNA_N, Seryl-tRNA synthetase N-terminal domain.
This domain is found associated with the Pfam tRNA
synthetase class II domain (pfam00587) and represents
the N-terminal domain of seryl-tRNA synthetase.
Length = 108
Score = 27.9 bits (63), Expect = 1.7
Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 14/79 (17%)
Query: 101 LQKELERARQEQENAASEKIKLERRLQEHQALQGDASDLKSSSAFSDLEVCQLKQEIELL 160
LQ ELE + E+ N S++I ++ +E DA L EV +LK E++ L
Sbjct: 41 LQVELEELQAER-NELSKEIGKAKKKKE------DAEALI-------AEVKELKDELKAL 86
Query: 161 RNELQRAEGELEDRCWAPP 179
EL+ E EL+ + P
Sbjct: 87 EAELRELEAELDKLLLSIP 105
>gnl|CDD|235588 PRK05743, ileS, isoleucyl-tRNA synthetase; Reviewed.
Length = 912
Score = 29.3 bits (67), Expect = 1.7
Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 13/84 (15%)
Query: 102 QKELERARQEQENAASEKIKLERRLQ---EHQALQGDASDLK-----SSSAFSDLEVCQL 153
K LE AR+E+ +S LE + + L+ +L+ S +D
Sbjct: 808 NKALEEARKEKVIGSS----LEAEVTLYADAALLESLGDELRFLLIVSQVEVADGPAAAA 863
Query: 154 KQ-EIELLRNELQRAEGELEDRCW 176
E+E L ++++AEGE +RCW
Sbjct: 864 AAEEVEGLAVKVEKAEGEKCERCW 887
>gnl|CDD|220365 pfam09726, Macoilin, Transmembrane protein. This entry is a highly
conserved protein present in eukaryotes.
Length = 680
Score = 29.1 bits (65), Expect = 1.9
Identities = 29/126 (23%), Positives = 54/126 (42%), Gaps = 28/126 (22%)
Query: 91 LQRAELDLANLQKELERARQEQENAASEKIKLERRLQEHQALQGDASDLKSSSAFSDLEV 150
++R E D+ LQ EL++ARQ + L+ S L S ++
Sbjct: 408 IERLEQDIKKLQAELQQARQNE-----------------SELRNQISLLTSLERSLKSDL 450
Query: 151 CQLKQEIELLRNELQRA-EGELEDRCWAPPPGLQHWLQLTHEIENKAYVKKKLMAEKQLQ 209
QLK+E ++L+ +L + +D+ Q + E K+ ++ AEKQL
Sbjct: 451 GQLKKENDMLQTKLNSMVSAKQKDK--------QSMQSM--EKRLKSEADSRVNAEKQLA 500
Query: 210 QAREAR 215
+ ++ +
Sbjct: 501 EEKKRK 506
>gnl|CDD|220723 pfam10377, ATG11, Autophagy-related protein 11. The function of
this family is conflicting. In the fission yeast,
Schizosaccharomyces pombe, this protein has been shown
to interact with the telomere cap complex. However, in
budding yeast, Saccharomyces cerevisiae, this protein is
called ATG11 and is shown to be involved in autophagy.
Length = 128
Score = 28.0 bits (63), Expect = 2.0
Identities = 14/49 (28%), Positives = 21/49 (42%), Gaps = 7/49 (14%)
Query: 81 LRRMMKDMEGLQRAELDLANLQKELERARQEQENAASEKIKLERRLQEH 129
+ + KD+E L + LQKE + RQ+ EKI R +
Sbjct: 5 VIKRFKDVEQLAK------KLQKENKSKRQKLHKLQKEKIAF-RNFKVG 46
>gnl|CDD|223250 COG0172, SerS, Seryl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 429
Score = 28.7 bits (65), Expect = 2.4
Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 13/79 (16%)
Query: 101 LQKELERARQEQENAASEKIKLERRLQEHQALQGDASDLKSSSAFSDLEVCQLKQEIELL 160
L +ELE + E+ N S++I + E DA +L + EV +LK++++ L
Sbjct: 41 LLRELEELQAER-NELSKEIGRALKRGE-----DDAEELIA-------EVKELKEKLKEL 87
Query: 161 RNELQRAEGELEDRCWAPP 179
L E EL+ P
Sbjct: 88 EAALDELEAELDTLLLTIP 106
>gnl|CDD|222629 pfam14257, DUF4349, Domain of unknown function (DUF4349). This
family of proteins is found in bacteria and archaea.
Proteins in this family are typically between 282 and
353 amino acids in length. There is a single completely
conserved residue D that may be functionally important.
Length = 262
Score = 28.7 bits (65), Expect = 2.5
Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 6/59 (10%)
Query: 98 LANLQKELERARQEQENAAS--EKIKLERRLQEHQ----ALQGDASDLKSSSAFSDLEV 150
L L+ ER E A + + +++ER L Q +L+ L A+S + V
Sbjct: 141 LKALRASEERLLALLERAGTVEDLLEVERELSRVQAEIESLEAQLRYLDDRVAYSTITV 199
>gnl|CDD|236912 PRK11448, hsdR, type I restriction enzyme EcoKI subunit R;
Provisional.
Length = 1123
Score = 28.8 bits (65), Expect = 2.7
Identities = 21/81 (25%), Positives = 39/81 (48%), Gaps = 11/81 (13%)
Query: 98 LANLQKELERARQEQENAASEK----IKLERRLQEHQALQGDASDLKSSSAFSDLEVCQL 153
L LQ+E+ +Q+ E A EK E + QE AL+G A++L+ + +L
Sbjct: 144 LHALQQEVLTLKQQLELQAREKAQSQALAEAQQQELVALEGLAAELEE-------KQQEL 196
Query: 154 KQEIELLRNELQRAEGELEDR 174
+ ++E L+ + E + +
Sbjct: 197 EAQLEQLQEKAAETSQERKQK 217
Score = 27.6 bits (62), Expect = 7.5
Identities = 11/64 (17%), Positives = 27/64 (42%), Gaps = 4/64 (6%)
Query: 72 RQKESSQQHLRRMMKDMEGL----QRAELDLANLQKELERARQEQENAASEKIKLERRLQ 127
R+K SQ +++ L E L+ +LE+ +++ + E+ + + +
Sbjct: 163 REKAQSQALAEAQQQELVALEGLAAELEEKQQELEAQLEQLQEKAAETSQERKQKRKEIT 222
Query: 128 EHQA 131
+ A
Sbjct: 223 DQAA 226
>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional.
Length = 880
Score = 28.9 bits (65), Expect = 2.9
Identities = 25/103 (24%), Positives = 49/103 (47%), Gaps = 7/103 (6%)
Query: 72 RQKESSQQHLRRMMKDMEGLQRAELDLANLQKELERARQEQENAASEKIKLERRLQEHQA 131
++ + + L + E L+ E ++ +L++ + +E+E A E L RL+E
Sbjct: 234 ETRDEADEVLEEHEERREELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEE--- 290
Query: 132 LQGDASDLKSSSAFSDLEVCQLKQEIELLRNELQRAEGELEDR 174
L+ + DL + + D + + +E R EL+ + EL DR
Sbjct: 291 LEEERDDLLAEAGLDDADA----EAVEARREELEDRDEELRDR 329
Score = 28.1 bits (63), Expect = 4.2
Identities = 24/85 (28%), Positives = 47/85 (55%), Gaps = 2/85 (2%)
Query: 92 QRAELD--LANLQKELERARQEQENAASEKIKLERRLQEHQALQGDASDLKSSSAFSDLE 149
+ AELD + +++ E+AR+ ++ A + E R +E + L+ + DL+ + A ++ E
Sbjct: 214 ELAELDEEIERYEEQREQARETRDEADEVLEEHEERREELETLEAEIEDLRETIAETERE 273
Query: 150 VCQLKQEIELLRNELQRAEGELEDR 174
+L +E+ LR L+ E E +D
Sbjct: 274 REELAEEVRDLRERLEELEEERDDL 298
>gnl|CDD|192987 pfam12325, TMF_TATA_bd, TATA element modulatory factor 1 TATA
binding. This is the C-terminal conserved coiled coil
region of a family of TATA element modulatory factor 1
proteins conserved in eukaryotes. The proteins bind to
the TATA element of some RNA polymerase II promoters and
repress their activity. by competing with the binding of
TATA binding protein. TMF1_TATA_bd is the most conserved
part of the TMFs. TMFs are evolutionarily conserved
golgins that bind Rab6, a ubiquitous ras-like
GTP-binding Golgi protein, and contribute to Golgi
organisation in animal and plant cells. The Rab6-binding
domain appears to be the same region as this C-terminal
family.
Length = 121
Score = 27.5 bits (62), Expect = 2.9
Identities = 10/44 (22%), Positives = 25/44 (56%)
Query: 72 RQKESSQQHLRRMMKDMEGLQRAELDLANLQKELERARQEQENA 115
+++ ++Q + ++ ++ E L+ + ++ L+KELE Q E
Sbjct: 45 AERDEARQEIVKLTEENEELRELKKEIEELEKELEDLEQRYETT 88
>gnl|CDD|153342 cd07658, F-BAR_NOSTRIN, The F-BAR (FES-CIP4 Homology and
Bin/Amphiphysin/Rvs) domain of Nitric Oxide Synthase
TRaffic INducer (NOSTRIN). F-BAR domains are
dimerization modules that bind and bend membranes and
are found in proteins involved in membrane dynamics and
actin reorganization. Nitric Oxide Synthase TRaffic
INducer (NOSTRIN) is expressed in endothelial and
epithelial cells and is involved in the regulation,
trafficking and targeting of endothelial NOS (eNOS).
NOSTRIN facilitates the endocytosis of eNOS by
coordinating the functions of dynamin and the
Wiskott-Aldrich syndrome protein (WASP). Increased
expression of NOSTRIN may be correlated to preeclampsia.
NOSTRIN contains an N-terminal F-BAR domain and a
C-terminal SH3 domain. F-BAR domains form banana-shaped
dimers with a positively-charged concave surface that
binds to negatively-charged lipid membranes. They can
induce membrane deformation in the form of long tubules.
The F-BAR domain of NOSTRIN is necessary and sufficient
for its membrane association and is responsible for its
subcellular localization.
Length = 239
Score = 28.1 bits (63), Expect = 2.9
Identities = 12/47 (25%), Positives = 20/47 (42%)
Query: 72 RQKESSQQHLRRMMKDMEGLQRAELDLANLQKELERARQEQENAASE 118
Q + ++ + K E +AE + LER R E E+A +
Sbjct: 168 VQDKEDEKLEAKRKKGEESRLKAENEYYTCCVRLERLRLEWESALRK 214
>gnl|CDD|216295 pfam01093, Clusterin, Clusterin.
Length = 434
Score = 28.5 bits (64), Expect = 3.1
Identities = 17/64 (26%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
Query: 69 YVYRQKESSQQHLRRMMKDMEGLQRAELDLANLQKELERARQEQENAASEKIKLERRLQE 128
YV + +++ +++M ME R E + NL LE+ ++E+E A ++E +L+E
Sbjct: 13 YVDEEVKNALIGVKQMKTLME---RTEEEHKNLMSTLEKTKKEKEEALKLANEVEEKLEE 69
Query: 129 HQAL 132
+ +
Sbjct: 70 EEEV 73
>gnl|CDD|130902 TIGR01843, type_I_hlyD, type I secretion membrane fusion protein,
HlyD family. Type I secretion is an ABC transport
process that exports proteins, without cleavage of any
signal sequence, from the cytosol to extracellular
medium across both inner and outer membranes. The
secretion signal is found in the C-terminus of the
transported protein. This model represents the adaptor
protein between the ATP-binding cassette (ABC) protein
of the inner membrane and the outer membrane protein,
and is called the membrane fusion protein. This model
selects a subfamily closely related to HlyD; it is
defined narrowly and excludes, for example, colicin V
secretion protein CvaA and multidrug efflux proteins
[Protein fate, Protein and peptide secretion and
trafficking].
Length = 423
Score = 28.4 bits (64), Expect = 3.3
Identities = 24/100 (24%), Positives = 47/100 (47%), Gaps = 11/100 (11%)
Query: 73 QKESSQQHLRRMMKDMEGLQ----RAELDLANLQKELERARQEQENAASEKIKLERRLQE 128
Q E ++++ ++ GLQ L + +ELE R+ +E +++L +E
Sbjct: 145 QLELILAQIKQLEAELAGLQAQLQALRQQLEVISEELEARRKLKEKGLVSRLELLELERE 204
Query: 129 HQALQGDASDLKSSSAFSDLEVCQLKQEIELLRNELQRAE 168
QG+ L++ E+ LK++I+ L+ E Q+ E
Sbjct: 205 RAEAQGELGRLEA-------ELEVLKRQIDELQLERQQIE 237
>gnl|CDD|220368 pfam09730, BicD, Microtubule-associated protein Bicaudal-D. BicD
proteins consist of three coiled-coiled domains and are
involved in dynein-mediated minus end-directed transport
from the Golgi apparatus to the endoplasmic reticulum
(ER). For full functioning they bind with GSK-3beta
pfam05350 to maintain the anchoring of microtubules to
the centromere. It appears that amino-acid residues
437-617 of BicD and the kinase activity of GSK-3 are
necessary for the formation of a complex between BicD
and GSK-3beta in intact cells.
Length = 711
Score = 28.6 bits (64), Expect = 3.4
Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 10/60 (16%)
Query: 98 LANLQKELERARQEQENAASEKIKLERRLQEHQALQGDASDLKSSSAFSDLEVCQLKQEI 157
+ LQ EL++ R E N +E ER Q +LK + +L+ +L+ EI
Sbjct: 36 ILELQAELKQLRAELSNVQAE---NERLSSLSQ-------ELKEENEMLELQRGRLRDEI 85
>gnl|CDD|222417 pfam13851, GAS, Growth-arrest specific micro-tubule binding. This
family is the highly conserved central region of a
number of metazoan proteins referred to as growth-arrest
proteins. In mouse, Gas8 is predominantly a testicular
protein, whose expression is developmentally regulated
during puberty and spermatogenesis. In humans, it is
absent in infertile males who lack the ability to
generate gametes. The localisation of Gas8 in the
motility apparatus of post-meiotic gametocytes and
mature spermatozoa, together with the detection of Gas8
also in cilia at the apical surfaces of epithelial cells
lining the pulmonary bronchi and Fallopian tubes
suggests that the Gas8 protein may have a role in the
functioning of motile cellular appendages. Gas8 is a
microtubule-binding protein localised to regions of
dynein regulation in mammalian cells.
Length = 201
Score = 28.0 bits (63), Expect = 3.5
Identities = 18/82 (21%), Positives = 42/82 (51%)
Query: 92 QRAELDLANLQKELERARQEQENAASEKIKLERRLQEHQALQGDASDLKSSSAFSDLEVC 151
+ E +A + +E +R + + A E +L ++L++++ + +LK+ + E+
Sbjct: 44 EHNEKLMAEIAQENKRLVEPLKKAEEEVEELRKKLKDYEKDKQSLKNLKARLKELEKELK 103
Query: 152 QLKQEIELLRNELQRAEGELED 173
LK E E+L ++ E E ++
Sbjct: 104 NLKWESEVLEQRFEKVERERDE 125
>gnl|CDD|223649 COG0576, GrpE, Molecular chaperone GrpE (heat shock protein)
[Posttranslational modification, protein turnover,
chaperones].
Length = 193
Score = 27.7 bits (62), Expect = 4.1
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 89 EGLQRAELDLANLQKELERARQEQENAASEKIKLE 123
+ RA+ + NL+K ER R+E + A EK +
Sbjct: 57 DKYLRAQAEFENLRKRTEREREEAKKYAIEKFAKD 91
>gnl|CDD|148846 pfam07471, Phage_Nu1, Phage DNA packaging protein Nu1. Terminase,
the DNA packaging enzyme of bacteriophage lambda, is a
heteromultimer composed of subunits Nu1 and A. The
smaller Nu1 terminase subunit has a low-affinity ATPase
stimulated by non-specific DNA.
Length = 164
Score = 27.6 bits (61), Expect = 4.3
Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Query: 63 ALTICWYVYRQKESSQQHLRRMMKDMEGLQRAELDLANLQKELERARQEQENAASEKIKL 122
A I WY R E + LR+ ++++ +E DL + ER R + A ++++K
Sbjct: 44 AAVIRWYAERDAEIENEKLRKEVEELR--AASESDLQPGTIDYERHRLTRAQADAQELKN 101
Query: 123 ERRLQE 128
R E
Sbjct: 102 ARDSAE 107
>gnl|CDD|236283 PRK08540, PRK08540, adenylosuccinate lyase; Reviewed.
Length = 449
Score = 28.0 bits (63), Expect = 4.6
Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 81 LRRMMKDMEGLQRAELDLANLQKELERARQEQENAASEKIKLER 124
L++M+ L RAE +L + +E A + A+++ +KLER
Sbjct: 25 LQKMLDVEAALARAEAELGLIPEE--AAEEINRKASTKYVKLER 66
>gnl|CDD|220623 pfam10186, Atg14, UV radiation resistance protein and
autophagy-related subunit 14. The Atg14 or Apg14
proteins are hydrophilic proteins with a predicted
molecular mass of 40.5 kDa, and have a coiled-coil motif
at the N terminus region. Yeast cells with mutant Atg14
are defective not only in autophagy but also in sorting
of carboxypeptidase Y (CPY), a vacuolar-soluble
hydrolase, to the vacuole. Subcellular fractionation
indicate that Apg14p and Apg6p are peripherally
associated with a membrane structure(s). Apg14p was
co-immunoprecipitated with Apg6p, suggesting that they
form a stable protein complex. These results imply that
Apg6/Vps30p has two distinct functions: in the
autophagic process and in the vacuolar protein sorting
pathway. Apg14p may be a component specifically required
for the function of Apg6/Vps30p through the autophagic
pathway. There are 17 auto-phagosomal component proteins
which are categorized into six functional units, one of
which is the AS-PI3K complex (Vps30/Atg6 and Atg14). The
AS-PI3K complex and the Atg2-Atg18 complex are essential
for nucleation, and the specific function of the AS-PI3K
apparently is to produce phosphatidylinositol
3-phosphate (PtdIns(3)P) at the pre-autophagosomal
structure (PAS). The localisation of this complex at the
PAS is controlled by Atg14. Autophagy mediates the
cellular response to nutrient deprivation, protein
aggregation, and pathogen invasion in humans, and
malfunction of autophagy has been implicated in multiple
human diseases including cancer. This effect seems to be
mediated through direct interaction of the human Atg14
with Beclin 1 in the human phosphatidylinositol 3-kinase
class III complex.
Length = 307
Score = 27.7 bits (62), Expect = 4.6
Identities = 34/132 (25%), Positives = 53/132 (40%), Gaps = 16/132 (12%)
Query: 96 LDLANLQKELERARQE----QENAASEKIKLERRLQ--EHQALQGDASDLKSSSAFSDLE 149
LDLA L E E +Q+ E A +E KL L E + + +++ + E
Sbjct: 27 LDLARLLLENEELKQKVEEALEGATNEDGKLAADLLKLEVARKKERLNQIRARISQLKEE 86
Query: 150 VCQLKQEIELLRNELQR-------AEGELEDRCWAPPPGLQHWLQLTHEIENKAYVKKKL 202
+ Q ++ IE L+ L + A +LE R + LQ +K L
Sbjct: 87 IEQKRERIEELKRALAQRRSDLSSASYQLEKRRASQLEKLQ---DEIKRTRSKLNALHSL 143
Query: 203 MAEKQLQQAREA 214
+AEK+ RE
Sbjct: 144 LAEKRSFLCREL 155
>gnl|CDD|237560 PRK13922, PRK13922, rod shape-determining protein MreC;
Provisional.
Length = 276
Score = 27.6 bits (62), Expect = 4.8
Identities = 18/105 (17%), Positives = 43/105 (40%), Gaps = 24/105 (22%)
Query: 59 LILIALTICWYVYRQKESSQQHLRRMMKDM----------------EGLQRAELDLANLQ 102
++L+ L + + ++ S +R+++ D+ + L +L+
Sbjct: 17 ILLLLLALALLLADRRLGSLSPVRQVVGDVVSPVQRVVNAPREFVSGVFESLA-SLFDLR 75
Query: 103 KELERARQEQENAASEKIKLERRLQEHQALQGDASDLKSSSAFSD 147
+E E ++E +LE RLQE + L+ + + L+ +
Sbjct: 76 EENEELKKELL-------ELESRLQELEQLEAENARLRELLNLKE 113
>gnl|CDD|180941 PRK07352, PRK07352, F0F1 ATP synthase subunit B; Validated.
Length = 174
Score = 27.2 bits (61), Expect = 4.9
Identities = 28/95 (29%), Positives = 49/95 (51%), Gaps = 8/95 (8%)
Query: 83 RMMKDMEGLQRAELDLANLQKELERARQE-QENAASEKIKLERRLQEHQAL--QGDASDL 139
R+ + + L A+ LA Q+E ER R + + A + + ++E++ E A Q A+DL
Sbjct: 65 RLRQAAQALAEAQQKLAQAQQEAERIRADAKARAEAIRAEIEKQAIEDMARLKQTAAADL 124
Query: 140 KSSSAFSDLEVCQLKQEIELLRNELQRAEGELEDR 174
SA + + QL++E L + +AE +L R
Sbjct: 125 ---SAEQERVIAQLRREAAEL--AIAKAESQLPGR 154
>gnl|CDD|213395 cd12152, F1-ATPase_delta, mitochondrial ATP synthase delta subunit.
The F-ATPase is found in bacterial plasma membranes,
mitochondrial inner membranes and in chloroplast
thylakoid membranes. It has also been found in the
archaea Methanosarcina barkeri. It uses a proton
gradient to drive ATP synthesis and hydrolyzes ATP to
build the proton gradient. The extrinisic membrane
domain, F1, is composed of alpha, beta, gamma, delta,
and epsilon subunits with a stoichiometry of 3:3:1:1:1.
Alpha and beta subunit form the globular catalytic
moiety, a hexameric ring of alternating subunits. Gamma,
delta and epsilon subunits form a stalk, connecting F1
to F0, the integral membrane proton translocating
domain. In bacteria, which is lacking a eukaryotic
epsilon subunit homolog, this subunit is called the
epsilon subunit.
Length = 123
Score = 26.7 bits (60), Expect = 5.3
Identities = 11/40 (27%), Positives = 18/40 (45%), Gaps = 6/40 (15%)
Query: 94 AELDLANLQKELERARQEQENAASEK------IKLERRLQ 127
++D+ ++ LERA + A E+ LER L
Sbjct: 84 EDIDVERAEEALERAEERLAQAKDEREKARAEAALERALA 123
>gnl|CDD|218806 pfam05911, DUF869, Plant protein of unknown function (DUF869).
This family consists of a number of sequences found in
Arabidopsis thaliana, Oryza sativa and Lycopersicon
esculentum (Tomato). The function of this family is
unknown.
Length = 767
Score = 28.0 bits (62), Expect = 5.5
Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 10/72 (13%)
Query: 99 ANLQKELERARQEQENAASEKIKLERRLQEHQALQGDASDLKSSSAFSDLEVCQLKQEIE 158
A L+K+L ++E AA+E L R LQE + + S+ KS + + EIE
Sbjct: 88 AELEKKLLELQKELARAAAENDALSRSLQEKSKMIMELSEEKS----------RAESEIE 137
Query: 159 LLRNELQRAEGE 170
L+ L+ AE E
Sbjct: 138 DLKARLESAEKE 149
>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional.
Length = 880
Score = 27.7 bits (62), Expect = 6.0
Identities = 28/101 (27%), Positives = 47/101 (46%), Gaps = 6/101 (5%)
Query: 76 SSQQHLRRMMKDMEGLQRAELDLANLQKELERARQEQENAASEKIKLERRLQEHQA---- 131
S + L +K++E L+L + +KELER +E + E K L E +
Sbjct: 585 ESVEELEERLKELEPFYNEYLELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEE 644
Query: 132 LQGDASDLKSSSAFSDLEVCQLKQEIELLRNELQRAEGELE 172
L+ + +L+ +S+ E +L++E L EL ELE
Sbjct: 645 LRKELEELEKK--YSEEEYEELREEYLELSRELAGLRAELE 683
>gnl|CDD|215180 PLN02316, PLN02316, synthase/transferase.
Length = 1036
Score = 27.9 bits (62), Expect = 6.1
Identities = 19/75 (25%), Positives = 40/75 (53%), Gaps = 3/75 (4%)
Query: 105 LERARQEQENAASEKIKLERRLQEHQALQGDASDLKSSSAFSDLEVCQLKQEIELLRNEL 164
LE R+E E A E+ + ER+ +E + + + + +++ A + EV + + E L+N L
Sbjct: 251 LEEKRRELEKLAKEEAERERQAEEQRRREEEKAAMEADRAQAKAEVEKRR---EKLQNLL 307
Query: 165 QRAEGELEDRCWAPP 179
++A ++ + P
Sbjct: 308 KKASRSADNVWYIEP 322
>gnl|CDD|221389 pfam12037, DUF3523, Domain of unknown function (DUF3523). This
presumed domain is functionally uncharacterized. This
domain is found in eukaryotes. This domain is typically
between 257 to 277 amino acids in length. This domain is
found associated with pfam00004. This domain has a
conserved LER sequence motif.
Length = 276
Score = 27.4 bits (61), Expect = 6.1
Identities = 21/85 (24%), Positives = 36/85 (42%), Gaps = 2/85 (2%)
Query: 92 QRAELDLANLQKELERARQEQENAASEKIKLER-RLQEHQALQGDASDLKSSSAFSDLEV 150
+ E A Q EL R R ++E + E ++QE L+ +A + ++
Sbjct: 102 TQQEQQRAQYQDELARKRYQKELEQQRRQNEELLKMQEESVLRQEAMRRATEEEILEMRR 161
Query: 151 CQLKQEIELLR-NELQRAEGELEDR 174
+++E EL R N + E E R
Sbjct: 162 ETIEEEAELERENIRAKIEAEARGR 186
>gnl|CDD|220640 pfam10234, Cluap1, Clusterin-associated protein-1. This protein is
conserved from worms to humans. The protein of 413 amino
acids contains a central coiled-coil domain, possibly
the region that binds to clusterin. Cluap1 expression is
highest in the nucleus and gradually increases during
late S to G2/M phases of the cell cycle and returns to
the basal level in the G0/G1 phases. In addition, it is
upregulated in colon cancer tissues compared to
corresponding non-cancerous mucosa. It thus plays a
crucial role in the life of the cell.
Length = 269
Score = 27.3 bits (61), Expect = 6.4
Identities = 21/80 (26%), Positives = 41/80 (51%), Gaps = 5/80 (6%)
Query: 96 LDLANLQKELERARQEQENAASEKIKLERRLQEHQALQGDASDLKSSSAFSD---LEVCQ 152
DL + +L +RQ+ + E ++E+ L+E A++ A+ L+ A D +
Sbjct: 139 YDLLGKELDLRESRQKALSRPLELAEVEKALKE--AIKNLAARLQQLQAELDNLKSDEAN 196
Query: 153 LKQEIELLRNELQRAEGELE 172
L+ +IE + EL+R + L+
Sbjct: 197 LEAKIERKKQELERTQKRLQ 216
>gnl|CDD|233594 TIGR01844, type_I_sec_TolC, type I secretion outer membrane
protein, TolC family. Members of This model are outer
membrane proteins from the TolC subfamily within the RND
(Resistance-Nodulation-cell Division) efflux systems.
These proteins, unlike the NodT subfamily, appear not to
be lipoproteins. All are believed to participate in type
I protein secretion, an ABC transporter system for
protein secretion without cleavage of a signal sequence,
although they may, like TolC, participate also in the
efflux of smaller molecules as well. This family
includes the well-documented examples TolC (E. coli),
PrtF (Erwinia), and AprF (Pseudomonas aeruginosa)
[Protein fate, Protein and peptide secretion and
trafficking, Transport and binding proteins, Porins].
Length = 415
Score = 27.3 bits (61), Expect = 6.5
Identities = 16/44 (36%), Positives = 26/44 (59%)
Query: 72 RQKESSQQHLRRMMKDMEGLQRAELDLANLQKELERARQEQENA 115
+Q S+Q+ L ++ + R LD+ N ++EL +ARQE NA
Sbjct: 340 QQVASAQKALDAYRQEYQVGTRTLLDVLNAEQELYQARQELANA 383
>gnl|CDD|234232 TIGR03499, FlhF, flagellar biosynthetic protein FlhF. [Cellular
processes, Chemotaxis and motility].
Length = 283
Score = 27.3 bits (61), Expect = 6.7
Identities = 25/118 (21%), Positives = 45/118 (38%), Gaps = 9/118 (7%)
Query: 88 MEGLQRAELDLANLQKELERARQEQENAASEKIKLERRLQEHQALQGDASDLKSSSAFSD 147
E A +K LE A + A +E ++L L+E A + +A
Sbjct: 52 DEEEVAAASAEEEAKKALEPADPAKLPATAEPLELPAPLEEPAAPA-------AQAAEPL 104
Query: 148 LEVCQLKQEIELLRNELQRAEGELEDRCWAPPPGLQHWLQLTHEIENKAYVKKKLMAE 205
L +L++E+ LR L+R L + P L+ E + ++L+ +
Sbjct: 105 LPEAELRKELSALRELLERLLAGLALQRR--DPEGAKLLERLLEAGVSEELARELLEK 160
>gnl|CDD|197874 smart00787, Spc7, Spc7 kinetochore protein. This domain is found
in cell division proteins which are required for
kinetochore-spindle association.
Length = 312
Score = 27.3 bits (61), Expect = 7.1
Identities = 21/86 (24%), Positives = 35/86 (40%), Gaps = 2/86 (2%)
Query: 89 EGLQRAELDLANLQKELERARQEQENAASEKIKLERRLQEHQALQGDASDLKSSSAFSDL 148
+ L+ L L+ ELE + + A EK+K LQE +L+ +
Sbjct: 182 DALEEELRQLKQLEDELEDCDPTELDRAKEKLKKL--LQEIMIKVKKLEELEEELQELES 239
Query: 149 EVCQLKQEIELLRNELQRAEGELEDR 174
++ L + L E+ AE +LE
Sbjct: 240 KIEDLTNKKSELNTEIAEAEKKLEQC 265
>gnl|CDD|235582 PRK05729, valS, valyl-tRNA synthetase; Reviewed.
Length = 874
Score = 27.4 bits (62), Expect = 7.3
Identities = 18/88 (20%), Positives = 32/88 (36%), Gaps = 9/88 (10%)
Query: 92 QRAELDLANLQKELERARQEQENAASEKIKLERRLQEHQALQGDASDLKSSSAFSDLEVC 151
++ L L E + E +LE E A +A + +S+ E+
Sbjct: 743 KKLPLLLKGADAEDRARLEANEAYIKRLARLE--SLEILADDEEAPEGAASAVVGGAELF 800
Query: 152 -------QLKQEIELLRNELQRAEGELE 172
++ E+ L EL + E E+E
Sbjct: 801 LPLEGLIDVEAELARLEKELAKLEKEIE 828
Score = 27.4 bits (62), Expect = 8.7
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 7/48 (14%)
Query: 91 LQRAELDLANLQKELERAR----QEQ--ENAASEKIKLER-RLQEHQA 131
L R E +LA L+KE+ER E A E ++ ER +L E++
Sbjct: 813 LARLEKELAKLEKEIERVEKKLSNEGFVAKAPEEVVEKEREKLAEYEE 860
>gnl|CDD|218602 pfam05478, Prominin, Prominin. The prominins are an emerging
family of proteins that among the multispan membrane
proteins display a novel topology. Mouse prominin and
human prominin (mouse)-like 1 (PROML1) are predicted to
contain five membrane spanning domains, with an
N-terminal domain exposed to the extracellular space
followed by four, alternating small cytoplasmic and
large extracellular, loops and a cytoplasmic C-terminal
domain. The exact function of prominin is unknown
although in humans defects in PROM1, the gene coding for
prominin, cause retinal degeneration.
Length = 807
Score = 27.3 bits (61), Expect = 7.4
Identities = 18/84 (21%), Positives = 37/84 (44%), Gaps = 7/84 (8%)
Query: 95 ELDLANLQKELERARQEQENAASEK-IKLE----RRLQEHQA--LQGDASDLKSSSAFSD 147
E++L + +EL+ N + +K E R +Q++ ++ L S+ D
Sbjct: 622 EVNLNSFAEELDALANNLPNGKLKVALKNEALDLRSIQQNFVPPMESLLEKLNSNVKTLD 681
Query: 148 LEVCQLKQEIELLRNELQRAEGEL 171
L+ ++ + E+Q A+G L
Sbjct: 682 ESSNDLQNAVKDVLAEVQAAQGFL 705
>gnl|CDD|234172 TIGR03345, VI_ClpV1, type VI secretion ATPase, ClpV1 family.
Members of this protein family are homologs of ClpB, an
ATPase associated with chaperone-related functions.
These ClpB homologs, designated ClpV1, are a key
component of the bacterial pathogenicity-associated type
VI secretion system [Protein fate, Protein and peptide
secretion and trafficking, Cellular processes,
Pathogenesis].
Length = 852
Score = 27.6 bits (62), Expect = 7.5
Identities = 18/100 (18%), Positives = 32/100 (32%), Gaps = 20/100 (20%)
Query: 91 LQRAELDLANLQKELERARQEQ-----------------ENAASEKIKLERRLQEHQALQ 133
L+ +A L+ EL+ +E +E LE R Q+ + L
Sbjct: 421 LEDLRRRIAALELELDALEREAALGADHDERLAELRAELAALEAELAALEARWQQEKEL- 479
Query: 134 GDASDLKSSSAFSDLEVCQLKQEIELLRNELQRAEGELED 173
+ + A + + + LR +L E L
Sbjct: 480 --VEAILALRAELEADADAPADDDAALRAQLAELEAALAS 517
>gnl|CDD|217838 pfam04004, Leo1, Leo1-like protein. Members of this family are
part of the Paf1/RNA polymerase II complex. The Paf1
complex probably functions during the elongation phase
of transcription. The Leo1 subunit of the yeast
Paf1-complex binds RNA and contributes to complex
recruitment. The subunit acts by co-ordinating
co-transcriptional chromain modifications and helping
recruitment of mRNA 3prime-end processing factors.
Length = 312
Score = 27.1 bits (60), Expect = 8.7
Identities = 17/78 (21%), Positives = 36/78 (46%), Gaps = 5/78 (6%)
Query: 72 RQKESSQQHLRRMMKDMEGLQRAELDLANLQKELERARQEQENAASEKIKLERRLQEHQA 131
RQ++S + + KD E +R +KE ++ R + EK+K + +
Sbjct: 219 RQRKSGGVKITIVGKDPEHEKRE-----REKKEEQKLRARRRRQNREKMKNKPPNRPGHG 273
Query: 132 LQGDASDLKSSSAFSDLE 149
D++ K+++ +S+ E
Sbjct: 274 SGSDSNVAKAATTYSEDE 291
>gnl|CDD|224739 COG1826, TatA, Sec-independent protein secretion pathway components
[Intracellular trafficking and secretion].
Length = 94
Score = 25.8 bits (57), Expect = 8.7
Identities = 12/62 (19%), Positives = 22/62 (35%), Gaps = 6/62 (9%)
Query: 81 LRRMMKDMEGLQRAELDLANLQKELERARQEQENAASEKIKLERRLQEHQALQGDASDLK 140
++ D++ ELD +EL+ ++E A + E Q L+ D
Sbjct: 39 FKKAASDVK----NELDEELKLEELDDKKKELT--AELQATKEELDQLASELKEDLKKKA 92
Query: 141 SS 142
Sbjct: 93 KP 94
>gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175).
Length = 820
Score = 27.2 bits (61), Expect = 9.0
Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 12/76 (15%)
Query: 73 QKESSQQHLRRMMKDMEGLQR------AELDLANLQKELE-----RARQEQENAASEKI- 120
E +QQ L+RMM +E L A+ L LQ+ +E + Q ++ + +
Sbjct: 532 SMELTQQDLQRMMDRIEELMESGRRAEAQQLLEQLQQMMENLQVTQGGQGGQSEMQQAME 591
Query: 121 KLERRLQEHQALQGDA 136
L L+E Q L +
Sbjct: 592 GLGETLREQQGLSDET 607
>gnl|CDD|223571 COG0497, RecN, ATPase involved in DNA repair [DNA replication,
recombination, and repair].
Length = 557
Score = 27.2 bits (61), Expect = 9.1
Identities = 10/40 (25%), Positives = 23/40 (57%)
Query: 79 QHLRRMMKDMEGLQRAELDLANLQKELERARQEQENAASE 118
++L ++ +++ L +E L L+KE+++ + E AA
Sbjct: 325 EYLDKIKEELAQLDNSEESLEALEKEVKKLKAELLEAAEA 364
>gnl|CDD|153362 cd07678, F-BAR_FCHSD1, The F-BAR (FES-CIP4 Homology and
Bin/Amphiphysin/Rvs) domain of FCH and double SH3
domains 1 (FCHSD1). F-BAR domains are dimerization
modules that bind and bend membranes and are found in
proteins involved in membrane dynamics and actin
reorganization. FCH and double SH3 domains 1 (FCHSD1)
contains an N-terminal F-BAR domain and two SH3 domains
at the C-terminus. It has been characterized only in
silico, and its biological function is still unknown.
F-BAR domains form banana-shaped dimers with a
positively-charged concave surface that binds to
negatively-charged lipid membranes. They can induce
membrane deformation in the form of long tubules.
Length = 263
Score = 26.9 bits (59), Expect = 9.2
Identities = 24/93 (25%), Positives = 44/93 (47%), Gaps = 14/93 (15%)
Query: 82 RRMMKDMEGLQRAELDLANLQKELERARQE-----------QENAASEKIKLERRLQEHQ 130
+ + K E LQ+A+ +L KEL ++++ +E AA + +L + +H
Sbjct: 109 QVLKKSTEQLQKAQAELLETVKELSKSKKLYGQLERVSEVAKEKAADVEARLNK--SDHG 166
Query: 131 ALQGDASDLKSSSAFSDLEVCQLKQEIELLRNE 163
AS K S+ FS + + Q+++ RNE
Sbjct: 167 IFHSKASLQKLSAKFS-AQSAEYSQQLQAARNE 198
>gnl|CDD|130141 TIGR01069, mutS2, MutS2 family protein. Function of MutS2 is
unknown. It should not be considered a DNA mismatch
repair protein. It is likely a DNA mismatch binding
protein of unknown cellular function [DNA metabolism,
Other].
Length = 771
Score = 27.1 bits (60), Expect = 9.4
Identities = 16/83 (19%), Positives = 34/83 (40%), Gaps = 3/83 (3%)
Query: 86 KDMEGLQRAELDLANLQKELERARQEQENAASEKIKLERRLQEHQALQGDASDLKSSSAF 145
K G + E+++ + EQ+N EK+ E+ + L+ + +LK
Sbjct: 503 KTFYGEFKEEINVLIEKLSALEKELEQKNEHLEKLLKEQEKL-KKELEQEMEELK--ERE 559
Query: 146 SDLEVCQLKQEIELLRNELQRAE 168
+ ++ K+ E L+ + E
Sbjct: 560 RNKKLELEKEAQEALKALKKEVE 582
>gnl|CDD|235366 PRK05218, PRK05218, heat shock protein 90; Provisional.
Length = 613
Score = 27.0 bits (61), Expect = 9.6
Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 6/75 (8%)
Query: 92 QRAELDLANLQKELERARQEQENAASEKIKLERRLQEHQALQGDASDLKSSSAFSDLEVC 151
R +LDL +E + +E+E A E L RL+E AL D++ S +D C
Sbjct: 470 ARGDLDLGKEDEEEK---EEKEEAEEEFKPLLERLKE--ALGDKVKDVRLSHRLTDSPAC 524
Query: 152 QLKQEIELLRNELQR 166
+ E ++ ++++
Sbjct: 525 LVADEGDMST-QMEK 538
>gnl|CDD|216275 pfam01063, Aminotran_4, Aminotransferase class IV. The D-amino
acid transferases (D-AAT) are required by bacteria to
catalyze the synthesis of D-glutamic acid and D-alanine,
which are essential constituents of bacterial cell wall
and are the building block for other D-amino acids.
Despite the difference in the structure of the
substrates, D-AATs and L-ATTs have strong similarity.
Length = 231
Score = 26.6 bits (59), Expect = 9.6
Identities = 9/45 (20%), Positives = 23/45 (51%)
Query: 78 QQHLRRMMKDMEGLQRAELDLANLQKELERARQEQENAASEKIKL 122
+HL R+ + + L L + +L+K ++ + A S ++++
Sbjct: 4 DEHLERLRRSAKALIGLPLSIEDLRKIIQELLEANGPAGSGRLRI 48
>gnl|CDD|227543 COG5218, YCG1, Chromosome condensation complex Condensin, subunit G
[Chromatin structure and dynamics / Cell division and
chromosome partitioning].
Length = 885
Score = 27.2 bits (60), Expect = 9.6
Identities = 16/66 (24%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Query: 81 LRRMMKDMEGLQRAELDLANLQKELERARQEQENAASEKIKLERRLQEHQALQGDASDLK 140
+RR+M+ +G R++ +L +++K+LE Q+ + K E + K
Sbjct: 820 IRRLMEQDDGDPRSQEELCDVKKDLENM-SIQDTSTVAKNVSFVLPDEKSDAMSIDEEDK 878
Query: 141 SSSAFS 146
S +FS
Sbjct: 879 DSESFS 884
>gnl|CDD|202833 pfam03962, Mnd1, Mnd1 family. This family of proteins includes
MND1 from S. cerevisiae. The mnd1 protein forms a
complex with hop2 to promote homologous chromosome
pairing and meiotic double-strand break repair.
Length = 188
Score = 26.4 bits (59), Expect = 9.8
Identities = 22/92 (23%), Positives = 42/92 (45%), Gaps = 14/92 (15%)
Query: 89 EGLQRAELDLANLQKELERARQE--QENAASEKIKLERR--------LQEHQALQGDASD 138
+ L + + L L+KELE +Q + A EK+K R L+E + L+ +
Sbjct: 62 QALNKLKTRLEKLKKELEELKQRIAELQAQIEKLKKGREETEERTELLEELKQLEKELKK 121
Query: 139 LKSS-SAFSDLE---VCQLKQEIELLRNELQR 166
LK+ + + + +LK+E ++ + R
Sbjct: 122 LKAELEKYEKNDPERIEKLKEETKVAKEAANR 153
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.316 0.129 0.364
Gapped
Lambda K H
0.267 0.0812 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 11,214,338
Number of extensions: 1050138
Number of successful extensions: 3388
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2898
Number of HSP's successfully gapped: 534
Length of query: 224
Length of database: 10,937,602
Length adjustment: 93
Effective length of query: 131
Effective length of database: 6,812,680
Effective search space: 892461080
Effective search space used: 892461080
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (25.6 bits)