RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11615
(224 letters)
>3ter_A Mammalian stromal interaction molecule-1; dimer, metal binding
protein; 2.55A {Caenorhabditis elegans}
Length = 136
Score = 70.1 bits (171), Expect = 1e-15
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Query: 154 KQEIELLRNELQRAEGELEDRC--WAPPPGLQHWLQLTHEIENKAYVKKKLMAEKQLQQA 211
E+E LR +L+ AE LE P LQ L+ T E E K++ K++++A
Sbjct: 5 HTEMENLRVQLEEAERRLEANSNGSQAPLALQPLLRRTCENEMAFLEKQRQDCFKEMKEA 64
Query: 212 REA 214
E
Sbjct: 65 IEM 67
Score = 44.3 bits (104), Expect = 4e-06
Identities = 11/42 (26%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 6 MAEKQLQQAREACEKLRKKRSSLVGAFVSTHG--KSIDDVDR 45
K++++A E ++L+KK+ S++ + G + D VD
Sbjct: 56 DCFKEMKEAIEMVDRLQKKQGSVLSSLKLATGAASTSDQVDS 97
>3teq_A Stromal interaction molecule 1; signaling protein; 1.90A {Homo
sapiens}
Length = 101
Score = 52.3 bits (125), Expect = 2e-09
Identities = 21/40 (52%), Positives = 27/40 (67%)
Query: 6 MAEKQLQQAREACEKLRKKRSSLVGAFVSTHGKSIDDVDR 45
AEKQL A+E EK++KKR++L G F H S+DDVD
Sbjct: 25 NAEKQLMVAKEGAEKIKKKRNTLFGTFHVAHSSSLDDVDH 64
Score = 50.0 bits (119), Expect = 1e-08
Identities = 21/36 (58%), Positives = 24/36 (66%)
Query: 179 PPGLQHWLQLTHEIENKAYVKKKLMAEKQLQQAREA 214
P LQ WLQLTHE+E + Y KK AEKQL A+E
Sbjct: 1 PEALQKWLQLTHEVEVQYYNIKKQNAEKQLMVAKEG 36
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 40.2 bits (94), Expect = 4e-04
Identities = 27/143 (18%), Positives = 62/143 (43%), Gaps = 4/143 (2%)
Query: 72 RQKESSQQHLRRMMKDMEGLQRAELDLANLQKELERARQE-QENAASEKIKLERRLQEHQ 130
++++ ++ + + ++ + +L L+ + E E + E+ + + +
Sbjct: 1004 KERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKR 1063
Query: 131 ALQGDASDLKSSSAFSDLEVCQLKQEIELLRNELQRAEGELEDRCWAPPPGLQHWLQLTH 190
L+G++SDL A ++ +LK ++ ELQ A LED L+ +L
Sbjct: 1064 KLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELES 1123
Query: 191 EIENKAYVKKKLMAEKQLQQARE 213
I + +++ L +EK + E
Sbjct: 1124 HISD---LQEDLESEKAARNKAE 1143
Score = 37.9 bits (88), Expect = 0.002
Identities = 12/104 (11%), Positives = 42/104 (40%), Gaps = 1/104 (0%)
Query: 72 RQKESSQQHLRRMMKDMEGLQRAELDLANLQKELERARQEQENAASEKIKLERRLQ-EHQ 130
+ ++ + + L + +L + E+E +E+E + + ++++Q +
Sbjct: 899 EKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQML 958
Query: 131 ALQGDASDLKSSSAFSDLEVCQLKQEIELLRNELQRAEGELEDR 174
L+ + +++ LE +I+ + +++ E +
Sbjct: 959 DLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKL 1002
Score = 36.7 bits (85), Expect = 0.005
Identities = 22/168 (13%), Positives = 61/168 (36%), Gaps = 8/168 (4%)
Query: 8 EKQLQQAREACEKLRKKRSSLVGAFVSTHGKSIDDVDRNSTSHVKDYILGTLILIALTIC 67
+++LQ+ +E +K + L + + + + + L A +
Sbjct: 863 DEELQRTKERQQKAEAELKELEQKHTQLC-EEKNLLQEKLQAETE------LYAEAEEMR 915
Query: 68 WYVYRQKESSQQHLRRMMKDMEGLQRAELDLANLQKELERARQE-QENAASEKIKLERRL 126
+ +K+ ++ L M +E + L +K++++ + +E E+ ++
Sbjct: 916 VRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQ 975
Query: 127 QEHQALQGDASDLKSSSAFSDLEVCQLKQEIELLRNELQRAEGELEDR 174
E G ++ + + +L +E +LL + L +
Sbjct: 976 LEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEE 1023
Score = 27.9 bits (62), Expect = 3.5
Identities = 21/121 (17%), Positives = 45/121 (37%), Gaps = 10/121 (8%)
Query: 8 EKQLQQAREACEKLRKKRSSLVGAFVSTHGKSIDDVDRNSTSHVKDYILGTLILIALTIC 67
E +L++ ++ ++L K + L G H + I ++ L A
Sbjct: 1045 EVRLKKEEKSRQELEKIKRKLEGESSDLHEQ-IAELQAQIAELKAQLAKKEEELQAAL-- 1101
Query: 68 WYVYRQKESSQQHLRRMMKDMEGLQRAELDLANLQKELERARQEQENAASEKIKLERRLQ 127
+ E +K + L+ +++LQ++LE + + A +K L L+
Sbjct: 1102 ----ARLEDETSQKNNALKKIRELES---HISDLQEDLESEKAARNKAEKQKRDLSEELE 1154
Query: 128 E 128
Sbjct: 1155 A 1155
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 39.5 bits (91), Expect = 6e-04
Identities = 36/252 (14%), Positives = 71/252 (28%), Gaps = 75/252 (29%)
Query: 5 FMAEKQLQQAREACEKLRKKRSSLVGAFVSTHGKSIDDVDRNSTSHVKDYILGTLILIAL 64
M++ + L K+ +V FV ++V R +Y
Sbjct: 55 IMSKDAVSGTLRLFWTLLSKQEEMVQKFV-------EEVLR------INY---------- 91
Query: 65 TICWYVYRQKESSQQHLRRMMKDMEGLQRAELDLANLQKELERARQEQENAASEKIKLER 124
+ + K +Q +E R D K +R + + +
Sbjct: 92 --KFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAK-YNVSRLQPYLKLRQALL--- 145
Query: 125 RLQEHQ--ALQGDASDLKSSSAFSDLEVCQ----------------LKQE------IELL 160
L+ + + G K+ A L+VC LK +E+L
Sbjct: 146 ELRPAKNVLIDGVLGSGKTWVA---LDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEML 202
Query: 161 RNELQRAEGELEDRCWAPPPGLQHWLQLTHEIENKAYVKKKLMAEKQLQQA-------RE 213
+ L + + R H + I + ++L+ K + +
Sbjct: 203 QKLLYQIDPNWTSRS-------DHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQN 255
Query: 214 AR----FDRGKC 221
A+ F+ C
Sbjct: 256 AKAWNAFN-LSC 266
Score = 32.9 bits (74), Expect = 0.094
Identities = 28/248 (11%), Positives = 76/248 (30%), Gaps = 63/248 (25%)
Query: 5 FMAEKQLQQA----REACEKLRKKRSSLVGAF-------VSTHGKSI-DDVDRNSTSHV- 51
+ K + AF ++T K + D + +T+H+
Sbjct: 237 LLKSKPYENCLLVLLNVQNA------KAWNAFNLSCKILLTTRFKQVTDFLSAATTTHIS 290
Query: 52 -KDYILG-----TLILIALTICWYVYRQKESSQQHLRRMMKDMEGLQRAELDL--ANLQK 103
+ + L+ + + Q L R + + L + +++
Sbjct: 291 LDHHSMTLTPDEVKSLLLKYL--------DCRPQDLPREVLTTNPRR---LSIIAESIRD 339
Query: 104 ELERA---RQEQENAASEKIKLERRLQEHQALQGDASDLKSSSAFSD--------LEV-- 150
L + + + I+ + E + L S F L +
Sbjct: 340 GLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRL---SVFPPSAHIPTILLSLIW 396
Query: 151 CQLK-QEIELLRNELQRAEGELEDRCWAPP----PGLQHWLQLTHEIENKAYVKKKLMAE 205
+ ++ ++ N+L + L ++ P + L+L ++EN+ + + ++
Sbjct: 397 FDVIKSDVMVVVNKLHKYS--LVEKQPKESTISIPSIY--LELKVKLENEYALHRSIVDH 452
Query: 206 KQLQQARE 213
+ + +
Sbjct: 453 YNIPKTFD 460
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 37.8 bits (88), Expect = 0.002
Identities = 24/110 (21%), Positives = 44/110 (40%), Gaps = 8/110 (7%)
Query: 72 RQKESSQQHLRRMMKDMEGLQRAELDLANLQKELERARQEQENAASE----KIKLERRL- 126
+ + L+ + +E ++ + L N +L+R EQ LE
Sbjct: 900 MMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYS 959
Query: 127 QEHQALQGDASDLKSS---SAFSDLEVCQLKQEIELLRNELQRAEGELED 173
E + L+ D L+ S + + V L++EI LR EL + + E +
Sbjct: 960 TETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKT 1009
Score = 36.2 bits (84), Expect = 0.006
Identities = 22/143 (15%), Positives = 54/143 (37%), Gaps = 15/143 (10%)
Query: 72 RQKESSQQHLRRMMKDMEGLQRAELDL-ANLQKELERARQEQENAASEKIKLERRLQEHQ 130
R+ + + + +++ M L+ L+ ++ER R +E A + ++ +E
Sbjct: 935 RKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIA 994
Query: 131 ALQGDASDLKSSSAFSDLEVCQLKQEIELLRNELQRAEGELEDRCWAPPPGLQHWLQLTH 190
L+ + ++ + + K E E L +EL+ L+
Sbjct: 995 KLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLK--------------TEKE 1040
Query: 191 EIENKAYVKKKLMAEKQLQQARE 213
E+ + + + K + E ++ E
Sbjct: 1041 ELNRRIHDQAKEITETMEKKLVE 1063
Score = 33.5 bits (77), Expect = 0.052
Identities = 25/140 (17%), Positives = 49/140 (35%), Gaps = 17/140 (12%)
Query: 74 KESSQQHLRRMMKDMEGLQRAELDLANLQKELERARQEQENAASEKIKLERRLQEHQALQ 133
+ + ++ D+E L+ +E + N + QE A + +L + E + ++
Sbjct: 955 EITYSTETEKLRSDVERLRMSEEEAKNATNRV---LSLQEEIAKLRKELHQTQTEKKTIE 1011
Query: 134 GDASDLKSSSAFSDLEVCQLKQEIELLRNELQRAEGELEDRCWAPPPGLQHWLQLTHEIE 193
A K + QL E++ L+ + EL R + + E
Sbjct: 1012 EWADKYKHETE-------QLVSELKEQNTLLKTEKEELNRR-------IHDQAKEITETM 1057
Query: 194 NKAYVKKKLMAEKQLQQARE 213
K V++ E L R
Sbjct: 1058 EKKLVEETKQLELDLNDERL 1077
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 34.2 bits (77), Expect = 0.014
Identities = 9/42 (21%), Positives = 17/42 (40%), Gaps = 15/42 (35%)
Query: 154 KQEIELLRNELQRAEGELEDRCWAP--PPGLQHWLQLTHEIE 193
KQ ++ L+ L + +A P L ++ T +E
Sbjct: 19 KQALKKLQASL---------KLYADDSAPALA--IKAT--ME 47
Score = 31.8 bits (71), Expect = 0.096
Identities = 11/44 (25%), Positives = 19/44 (43%), Gaps = 17/44 (38%)
Query: 118 EK--IK-LERRLQEHQALQGDASDLKSSSAFSDLEVCQLKQEIE 158
EK +K L+ L+ + A D S+ A + +K +E
Sbjct: 18 EKQALKKLQASLKLY------ADD--SAPALA------IKATME 47
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: SSA; 2.60A {Pyrococcus
horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Length = 455
Score = 34.5 bits (80), Expect = 0.024
Identities = 19/101 (18%), Positives = 42/101 (41%), Gaps = 17/101 (16%)
Query: 82 RRMMKDMEGLQRA-ELDLA--NLQKELERARQEQENAASEKIKLERRLQEHQALQGDASD 138
R ++ ++ + +LD KE+ R R E+ N + +I R+ E +
Sbjct: 21 RGELEKVKWVDEILKLDTEWRTKLKEINRLRHER-NKIAVEIGKRRKKGE------PVDE 73
Query: 139 LKSSSAFSDLEVCQLKQEIELLRNELQRAEGELEDRCWAPP 179
L + + ++ + I L NE++ + +++ W P
Sbjct: 74 LLA-------KSREIVKRIGELENEVEELKKKIDYYLWRLP 107
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics,
NPPSFA, nationa on protein structural and functional
analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Length = 425
Score = 34.0 bits (79), Expect = 0.029
Identities = 21/73 (28%), Positives = 39/73 (53%), Gaps = 14/73 (19%)
Query: 101 LQKELERARQEQENAASEKIKLERRLQEHQALQGDASDLKSSSAFSDLEVCQLKQEIELL 160
+ K LE R E+ N S++I +R + D +++++ V +LK+EI+ L
Sbjct: 42 IIKRLEALRSER-NKLSKEIGKLKREGK------DTTEIQN-------RVKELKEEIDRL 87
Query: 161 RNELQRAEGELED 173
EL++ E EL++
Sbjct: 88 EEELRKVEEELKN 100
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A
{Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20
c.37.1.20
Length = 854
Score = 34.1 bits (79), Expect = 0.033
Identities = 15/77 (19%), Positives = 35/77 (45%), Gaps = 3/77 (3%)
Query: 95 ELDLANLQKELERARQEQENAASEKIKLERRLQEHQALQGDASDLKS---SSAFSDLEVC 151
L+ LQ E+ER ++E + +L+ E L + + L++ ++
Sbjct: 405 ALERKKLQLEIEREALKKEKDPDSQERLKAIEAEIAKLTEEIAKLRAEWEREREILRKLR 464
Query: 152 QLKQEIELLRNELQRAE 168
+ + ++ +R E++ AE
Sbjct: 465 EAQHRLDEVRREIELAE 481
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A
{Geobacillus kaustophilus}
Length = 213
Score = 32.0 bits (73), Expect = 0.097
Identities = 13/87 (14%), Positives = 34/87 (39%)
Query: 86 KDMEGLQRAELDLANLQKELERARQEQENAASEKIKLERRLQEHQALQGDASDLKSSSAF 145
+ + +++A D ++ +E Q S + LE E A + + A
Sbjct: 4 GEKQVMEQATYDEPEREQPIEEEAAPQPEEESGGVPLEEAGGEEAAEPAEKAPTAEELAA 63
Query: 146 SDLEVCQLKQEIELLRNELQRAEGELE 172
+ ++ +L+ ++ + + R + E
Sbjct: 64 AKAQIAELEAKLSEMEHRYLRLYADFE 90
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM,
protein engineering, structural protein; HET: ADP; 2.80A
{Dictyostelium discoideum} SCOP: k.1.1.1
Length = 1010
Score = 31.2 bits (71), Expect = 0.30
Identities = 20/179 (11%), Positives = 53/179 (29%), Gaps = 21/179 (11%)
Query: 19 EKLRKKR----SSLVGAFVSTHGKSIDDVDRNSTSHVKDYILGTLILIALTICWYVYRQ- 73
E+ R++R + + D+ ++ +D+ + + Y++
Sbjct: 755 EEAREQRLGSEQTKSDYLKRANELVQWINDKQASLESRDFGDSIESVQSFMNAHKEYKKT 814
Query: 74 KESSQQHLRRMMKDMEGLQRAELDLANLQKELERARQEQENAASEKIKLERRLQEHQALQ 133
++ + ++ + + +L L + + A S LE+ QEH
Sbjct: 815 EKPPKGQEVSELEAIYNSLQTKLRLIKREPFVAPAGLTPNEIDSTWSALEKAEQEHAEAL 874
Query: 134 GDASDLKSSSAFSDLEVCQLKQEIELLR----------------NELQRAEGELEDRCW 176
+ A + ++ +++E +Q LE
Sbjct: 875 RIELKRQKKIAVLLQKYNRILKKLENWATTKSVYLGSNETGDSITAVQAKLKNLEAFDG 933
Score = 26.9 bits (60), Expect = 7.3
Identities = 9/91 (9%), Positives = 27/91 (29%), Gaps = 9/91 (9%)
Query: 72 RQKESSQQHLRRMMKDMEGLQRAELDLANLQKELERAR-------QEQENAASEKIKLER 124
+ K + + + +E ++ DL ++ +L E+++ +
Sbjct: 922 QAKLKNLEAFDGECQSLE--GQSNSDLLSILAQLTELNYNGVPELTERKDTFFAQQWTGV 979
Query: 125 RLQEHQALQGDASDLKSSSAFSDLEVCQLKQ 155
+ ++L+ DL
Sbjct: 980 KSSAETYKNTLLAELERLQKIEDLHHHHHHH 1010
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor,
microtubles, motor protein; HET: ADP SPM; 2.81A
{Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C*
Length = 3245
Score = 31.0 bits (70), Expect = 0.34
Identities = 18/168 (10%), Positives = 56/168 (33%), Gaps = 21/168 (12%)
Query: 72 RQKESSQQHLRRMMKDMEGLQRAELDLANLQKELERARQEQENAASEKIKLERRLQEHQ- 130
+++ ++ + ++ L+ E + +LQ L + +E + + + +++ + Q
Sbjct: 1910 EKRDQLEEEQLHLNIGLKKLRDTEAQVKDLQVSLAQKNRELDVKNEQANQKLKQMVQDQQ 1969
Query: 131 ----------------ALQGDASDLKSSSAFSDLEVCQLKQEIELLRNELQRAEGELEDR 174
++ ++ A++DLE + + +L+ A EL+ +
Sbjct: 1970 AAEIKQKDARELQVQLDVRNKEIAVQKVKAYADLEKAEPTGPLREEVEQLENAANELKLK 2029
Query: 175 CWAPPPGLQ----HWLQLTHEIENKAYVKKKLMAEKQLQQAREARFDR 218
+ E +++ E + + R
Sbjct: 2030 QDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIA 2077
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A
{Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Length = 995
Score = 30.8 bits (70), Expect = 0.36
Identities = 13/146 (8%), Positives = 44/146 (30%), Gaps = 1/146 (0%)
Query: 68 WYVYRQKESSQQHLRRMMKDMEGLQRAELDLANLQKELERARQEQENAASEKIKLERRLQ 127
+ + K + + + + L+K + + + K+ LQ
Sbjct: 822 YNSLQTKLRLIKREPFVAPAGLTPNEIDSTWSALEKAEQEHAEALRIELKRQKKIAVLLQ 881
Query: 128 EHQALQGDASDLKSSSAFSDLEVCQLKQEIELLRNELQRAEGELEDRCWAPPPGLQHWLQ 187
++ + + ++ + L + I ++ +L+ E + L
Sbjct: 882 KYNRILKKLENWATTKS-VYLGSNETGDSITAVQAKLKNLEAFDGECQSLEGQSNSDLLS 940
Query: 188 LTHEIENKAYVKKKLMAEKQLQQARE 213
+ ++ Y + E++ +
Sbjct: 941 ILAQLTELNYNGVPELTERKDTFFAQ 966
>2w6j_H F1-ATPase delta subunit; ATP phosphorylase (H+ transporting),
transit peptide, F1FO ATP synthase, ATP phosphorylase;
3.84A {Bos taurus} PDB: 2w6h_H 2w6i_H
Length = 168
Score = 29.5 bits (66), Expect = 0.55
Identities = 13/41 (31%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Query: 95 ELDLANLQKELERARQEQENAASE--KIKLERRLQEHQALQ 133
LDL + LE+A+ E AA E + +++ R++ ++AL
Sbjct: 124 MLDLGAAKANLEKAQSELLGAADEATRAEIQIRIEANEALV 164
>2ck3_H ATP synthase subunit delta\, mitochondrial; hydrolase; HET: ANP
ADP; 1.9A {Bos taurus} SCOP: a.2.10.1 b.93.1.1 PDB:
1e79_H* 1h8e_H* 2jdi_H* 2v7q_H* 2wss_H* 2xnd_H*
Length = 146
Score = 29.1 bits (65), Expect = 0.59
Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Query: 94 AELDLANLQKELERARQEQENAASE--KIKLERRLQEHQALQ 133
LDL + LE+A+ E AA E + +++ R++ ++AL
Sbjct: 101 DMLDLGAAKANLEKAQSELLGAADEATRAEIQIRIEANEALV 142
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain
cytoplasmic; motor protein, AAA+ protein, ASCE protein,
P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma
japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Length = 2695
Score = 30.2 bits (68), Expect = 0.67
Identities = 16/152 (10%), Positives = 40/152 (26%), Gaps = 16/152 (10%)
Query: 7 AEKQLQQAREACEKLRKKRSSLVGAFVSTHGKSIDDVDRNSTSHVKDYILGT-------- 58
A + + F D V +++
Sbjct: 1785 ANNMVDVIPMEFTDFIVPEVNKELVFTEPIQTIRDAVVNILIHFDRNFYQKMKVGVNPRS 1844
Query: 59 ----LILIALTICWYVYRQKESSQQHLRRMMKDMEGLQRAELDLANLQKELERARQEQEN 114
+ + + + ++ + R + +E L + L + L K L ++
Sbjct: 1845 PGYFIDGLRALVKLVTAKYQDLQEN-QRFVNVGLEKLNESVLKVNELNKTLS--ISLVKS 1901
Query: 115 AASEKIKLERRLQE-HQALQGDASDLKSSSAF 145
EK + ++ + Q + SS +
Sbjct: 1902 LTFEKERWLNTTKQFSKTSQELIGNCIISSIY 1933
>2ww9_A SEC sixty-one protein homolog; ribonucleoprotein, transmembrane,
phospho signal sequence, membrane, ribosome, transport;
8.60A {Saccharomyces cerevisiae} PDB: 2wwa_A
Length = 490
Score = 29.7 bits (66), Expect = 0.72
Identities = 4/36 (11%), Positives = 12/36 (33%), Gaps = 2/36 (5%)
Query: 57 GTLILIALTICWYVYRQ--KESSQQHLRRMMKDMEG 90
I++ + + + E Q + + + G
Sbjct: 450 AAGIVVGIAGGFSLLEVITIEYQQSGGQSALNQVLG 485
>2peb_A Putative dioxygenase; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2, oxidoreductase; 1.46A {Nostoc punctiforme}
Length = 122
Score = 28.6 bits (64), Expect = 0.88
Identities = 8/31 (25%), Positives = 11/31 (35%), Gaps = 1/31 (3%)
Query: 3 VYFMAEKQLQQAREACEKLRKKRSSLVGAFV 33
VYF A A E L + +G +
Sbjct: 16 VYFDAA-SRDVAARVREGLGARFEVQLGRWF 45
>2ksd_A Aerobic respiration control sensor protein ARCB; methods
development, histidine kinase receptor, membrane domain,
two-helical hairpin; NMR {Escherichia coli}
Length = 115
Score = 28.0 bits (62), Expect = 1.0
Identities = 20/99 (20%), Positives = 41/99 (41%), Gaps = 12/99 (12%)
Query: 20 KLRKKRSSLVGAFV----STHGKSIDDVDRNSTSHVKDYILGTLILIALTICWYVY---- 71
KL R S++ A + + + + D ++ ++ L W VY
Sbjct: 17 KLGLVRFSMLLALALVVLAIVVQMAVTMVLHGQVESID-VIRSIFFGLLITPWAVYFLSV 75
Query: 72 --RQKESSQQHLRRMMKDMEGLQRAELDL-ANLQKELER 107
Q E S+Q L R+++ +E ++ +L L L+ + +
Sbjct: 76 VVEQLEESRQRLSRLVQKLEEMRERDLSLNVQLKDNIAQ 114
>2pms_C Pneumococcal surface protein A (PSPA); lactoferrin, protein-protein
metal transport, hydrolase; HET: NAG; 2.91A
{Streptococcus pneumoniae} SCOP: h.4.19.1
Length = 125
Score = 28.3 bits (62), Expect = 1.2
Identities = 18/101 (17%), Positives = 39/101 (38%)
Query: 72 RQKESSQQHLRRMMKDMEGLQRAELDLANLQKELERARQEQENAASEKIKLERRLQEHQA 131
Q +Q L+ + + E A LQ +L+ + + K++ E
Sbjct: 20 NQVHRLEQELKEIDESESEDYAKEGFRAPLQSKLDAKKAKLSKLEELSDKIDELDAEIAK 79
Query: 132 LQGDASDLKSSSAFSDLEVCQLKQEIELLRNELQRAEGELE 172
L+ + ++ D L++ I + EL++ E +L+
Sbjct: 80 LEDQLKAAEENNNVEDYFKEGLEKTIAAKKAELEKTEADLK 120
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex,
cytoplasm, ribonucleoprotein, structural protein; 3.50A
{Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Length = 861
Score = 29.0 bits (64), Expect = 1.3
Identities = 22/101 (21%), Positives = 42/101 (41%), Gaps = 8/101 (7%)
Query: 72 RQKESSQQHLRRMMKDMEGLQRAELDLANLQKELERARQEQENAASEKIKLERRLQEHQA 131
Q+ +++ +R+ ++ G R E Q E E+AR+E + + +E
Sbjct: 668 SQEAAAKHEAQRLEQEARG--RLERQKILDQSEAEKARKELLELEAMSMAVESTGNAKAE 725
Query: 132 LQGDASDLKSSSAFSDLEVCQLKQEIELLRNELQRAEGELE 172
+ A +++ + V Q K + + L E E ELE
Sbjct: 726 AESRA---EAARIEGEGSVLQAKLKAQALAIE---TEAELE 760
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 28.6 bits (63), Expect = 1.4
Identities = 14/69 (20%), Positives = 28/69 (40%), Gaps = 9/69 (13%)
Query: 74 KESSQQHLRRMMKDMEGLQRAELDLANLQKELE---RARQEQENAASEKIKLERRLQEHQ 130
+E ++ L+ D + +K+LE + + EQ EK K+ R+ +
Sbjct: 91 REEQRKRLQE--LDAASKVMEQEWREKAKKDLEEWNQRQSEQV----EKNKINNRIADKA 144
Query: 131 ALQGDASDL 139
Q +D+
Sbjct: 145 FYQQPDADI 153
Score = 27.4 bits (60), Expect = 3.1
Identities = 22/111 (19%), Positives = 37/111 (33%), Gaps = 35/111 (31%)
Query: 104 ELERARQEQENAASEKIKLERRLQEHQALQGDASDLKSSSAFSDLEVCQLKQEIELLRNE 163
+ +R QE E I+ R Q + + DA+ +QE
Sbjct: 76 QADRLTQE-----PESIRKWREEQRKRLQELDAASKVM------------EQEWR----- 113
Query: 164 LQRAEGELEDRCWAPPPGLQHWLQLTHEIENKAYVKKKLMAEKQLQQAREA 214
++A+ +LE+ W Q E K +A+K Q +A
Sbjct: 114 -EKAKKDLEE-----------WNQRQSEQVEKN-KINNRIADKAFYQQPDA 151
Score = 25.9 bits (56), Expect = 8.8
Identities = 10/42 (23%), Positives = 22/42 (52%)
Query: 92 QRAELDLANLQKELERARQEQENAASEKIKLERRLQEHQALQ 133
E + +E +R R ++ +AAS+ ++ E R + + L+
Sbjct: 80 LTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLE 121
>3lnn_A Membrane fusion protein (MFP) heavy metal cation ZNEB (CZCB-LIKE);
structural genomics, PSI-2, protein structure
initiative; 2.80A {Cupriavidus metallidurans}
Length = 359
Score = 28.5 bits (64), Expect = 1.8
Identities = 7/42 (16%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 91 LQRAELDLANLQKELERARQ-EQENAASEKIKLERRLQEHQA 131
+A + ++ L+R R+ ++ A+++ + + QA
Sbjct: 100 AAKARAAMTMARRNLDRQRELDKSEIAAKRDFEQAQSDYDQA 141
Score = 27.8 bits (62), Expect = 3.5
Identities = 14/76 (18%), Positives = 26/76 (34%), Gaps = 21/76 (27%)
Query: 97 DLANLQKELERARQEQENAASEKIKLERRLQEHQALQGDASDLKSSSAFSDLEVCQLKQE 156
DLA + +AR A L+R +L S + K++
Sbjct: 92 DLAQANSDAAKARAAMTMARRN---LDR-----------QRELDKSEIAA-------KRD 130
Query: 157 IELLRNELQRAEGELE 172
E +++ +A E +
Sbjct: 131 FEQAQSDYDQAASESQ 146
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP
hydrolysis, GDP, GMP, dynamin related, large GTPase
family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens}
SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A*
2bc9_A* 2d4h_A*
Length = 592
Score = 28.8 bits (63), Expect = 1.8
Identities = 16/103 (15%), Positives = 41/103 (39%), Gaps = 3/103 (2%)
Query: 72 RQKESSQQHLRRMMKDMEGLQRAELDLANLQKELERARQEQENAASEKIKLERRLQEHQA 131
++ E + + L + + ++ ER+ QE +EK++ +R +
Sbjct: 487 KEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQ 546
Query: 132 LQGDASDLKSSSAFSDLEVCQLKQEIELLRNELQRAEGELEDR 174
+ A L+ ++E +++NE+Q + ++ R
Sbjct: 547 ERTLALKLQEQEQLLKEG---FQKESRIMKNEIQDLQTKMRRR 586
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell
shape regulation; 2.5A {Listeria monocytogenes}
Length = 255
Score = 27.8 bits (62), Expect = 2.7
Identities = 10/54 (18%), Positives = 23/54 (42%), Gaps = 3/54 (5%)
Query: 97 DLANLQKELERARQEQENAASEKIKLERRLQEHQALQGDASDLKSSSAFSDLEV 150
DL N E + ++ E A + ++ +E++ L+ L + + D +
Sbjct: 20 DLKNTYTENQHLKERLEELAQLESEVADLKKENKDLK---ESLDITDSIRDYDP 70
>2p8i_A Putative dioxygenase; YP_555069.1, structural genomics, JOIN for
structural genomics, JCSG, protein structure initiative
oxidoreductase; HET: MSE CIT; 1.40A {Burkholderia
xenovorans} SCOP: d.58.55.1 PDB: 2nyh_A*
Length = 117
Score = 27.0 bits (60), Expect = 2.7
Identities = 7/30 (23%), Positives = 10/30 (33%), Gaps = 1/30 (3%)
Query: 3 VYFMAEKQLQQAREACEKLRKKRSSLVGAF 32
VYF A A E++ S +
Sbjct: 17 VYFDAS-SRDAAWTLREQIEAHWSGKLQLG 45
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly,
membrane fusion protein, drug efflux pump, periplasmic
protein; 2.99A {Escherichia coli}
Length = 341
Score = 27.7 bits (62), Expect = 3.1
Identities = 18/90 (20%), Positives = 39/90 (43%), Gaps = 14/90 (15%)
Query: 91 LQRAELDLANLQKELERARQEQENAASEKIKLER--RLQEHQA-----LQGDASDLKSSS 143
++ E L L+ + ++A E + A ++ R RL + QA L A+++
Sbjct: 71 IKEVEATLMELRAQRQQAEAELKLA---RVTYSRQQRLAQTQAVSQQDLDNAATEMAVKQ 127
Query: 144 AFSDLEVCQLKQEIELLRNELQRAEGELED 173
A ++ + +I+ + L A+ L+
Sbjct: 128 A----QIGTIDAQIKRNQASLDTAKTNLDY 153
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 28.1 bits (62), Expect = 3.3
Identities = 27/181 (14%), Positives = 52/181 (28%), Gaps = 64/181 (35%)
Query: 32 FVSTHGKSIDDVDRNSTSHVKDY---ILGTLI---LIALTICWYVYRQKESSQQHLRRMM 85
F T+G SI D+ N+ ++ + G I A+ + + ++
Sbjct: 1653 FKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMI-----FETIVDGKLKTEKIF 1707
Query: 86 KDM---------EGLQRAELDL-ANLQ-----------KELERARQEQENAA----SEKI 120
K++ ++ L Q ++L+ +A S
Sbjct: 1708 KEINEHSTSYTFRS-EKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHS--- 1763
Query: 121 KLERRLQEHQALQGDASDLKSSSAFSDLEVCQLKQEIELLRNELQRAEGELEDRCWAPPP 180
L E+ AL A + + L +E++ R G A P
Sbjct: 1764 -----LGEYAALASLADVM----SIESL--------VEVVF---YR--GMTMQV--AVPR 1799
Query: 181 G 181
Sbjct: 1800 D 1800
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC
transporter ATPase domain-like; HET: DNA ADP; 2.70A
{Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Length = 371
Score = 27.5 bits (61), Expect = 3.6
Identities = 13/101 (12%), Positives = 34/101 (33%)
Query: 74 KESSQQHLRRMMKDMEGLQRAELDLANLQKELERARQEQENAASEKIKLERRLQEHQALQ 133
++ ++ + E L+ +++NL+KE E+ + E + R + +
Sbjct: 176 EKRLERIEGELNYKEESLKARLKEMSNLEKEKEKLTKFVEYLDKVRRIFGRNGFQAYLRE 235
Query: 134 GDASDLKSSSAFSDLEVCQLKQEIELLRNELQRAEGELEDR 174
++ + E +EL ++ R
Sbjct: 236 KYVPLIQKYLNEAFSEFDLPYSFVELTKDFEVRVHAPNGVL 276
>3oee_H ATP synthase subunit delta; ATP phosphatase, F1F0 ATPase, ATP
synthesis, H ADP, PO4, mitochondria; HET: ANP; 2.74A
{Saccharomyces cerevisiae} PDB: 2wpd_H* 3fks_H 2hld_H*
3oeh_H* 3ofn_H* 3zry_H* 3oe7_H*
Length = 138
Score = 26.6 bits (59), Expect = 3.8
Identities = 7/41 (17%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 94 AELDLANLQKELERARQEQENA-ASEKIKLERRLQEHQALQ 133
N++ L A++ ++ A E + +++ + LQ
Sbjct: 94 ESFSQENIKNLLAEAKKNVSSSDAREAAEAAIQVEVLENLQ 134
>2xok_H ATP synthase; hydrolase, ATP-binding, F(O), F(1), mitochondr inner
membrane, transmembrane; HET: ANP; 3.01A {Saccharomyces
cerevisiae}
Length = 160
Score = 26.7 bits (59), Expect = 4.3
Identities = 7/41 (17%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 94 AELDLANLQKELERARQEQENA-ASEKIKLERRLQEHQALQ 133
N++ L A++ ++ A E + +++ + LQ
Sbjct: 116 ESFSQENIKNLLAEAKKNVSSSDAREAAEAAIQVEVLENLQ 156
>1yvl_A Signal transducer and activator of transcription 1-alpha/beta;
signaling protein; HET: PTR; 3.00A {Homo sapiens}
Length = 683
Score = 27.2 bits (59), Expect = 5.8
Identities = 14/98 (14%), Positives = 34/98 (34%), Gaps = 2/98 (2%)
Query: 78 QQHLRRMMKDMEGLQRAELD--LANLQKELERARQEQENAASEKIKLERRLQEHQALQGD 135
R + L + + NLQ + + +K ER++ E+
Sbjct: 65 DDQYSRFSLENNFLLQHNIRKSKRNLQDNFQEDPIQMSMIIYSCLKEERKILENAQRFNQ 124
Query: 136 ASDLKSSSAFSDLEVCQLKQEIELLRNELQRAEGELED 173
A S + +L ++ +++++ E E++
Sbjct: 125 AQSGNIQSTVMLDKQKELDSKVRNVKDKVMCIEHEIKS 162
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB,
proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR
binding; 6.93A {Bacillus subtilis}
Length = 758
Score = 26.8 bits (60), Expect = 6.6
Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 6/61 (9%)
Query: 76 SSQQHLRRMMKDMEGLQRAELDLANLQKELERARQEQ--ENAAS---EKIKLERRLQEHQ 130
S+ LR L+ E L ++KE + A Q Q E AAS + +L ++++ +
Sbjct: 382 GSKVRLRSFTTPPN-LKELEQKLDEVRKEKDAAVQSQEFEKAASLRDTEQRLREQVEDTK 440
Query: 131 A 131
Sbjct: 441 K 441
>1aqt_A ATP synthase; hydrolase, ATPase, epsilon subunit; 2.30A
{Escherichia coli} SCOP: a.2.10.1 b.93.1.1 PDB: 1qo1_J
1bsh_A 1bsn_A 1fs0_E 3oaa_H*
Length = 138
Score = 25.7 bits (57), Expect = 7.5
Identities = 6/40 (15%), Positives = 15/40 (37%), Gaps = 2/40 (5%)
Query: 94 AELDLANLQKELERARQEQENAAS--EKIKLERRLQEHQA 131
+LD A + +A + ++ + + L + A
Sbjct: 87 QDLDEARAMEAKRKAEEHISSSHGDVDYAQASAELAKAIA 126
>2e5y_A ATP synthase epsilon chain; F1FO ATP synthase, F1-ATPase, epsilon
subunit, hydrolase; HET: ATP; 1.92A {Bacillus SP} PDB:
2e5t_A 2e5u_A
Length = 133
Score = 25.7 bits (57), Expect = 7.8
Identities = 6/39 (15%), Positives = 16/39 (41%)
Query: 94 AELDLANLQKELERARQEQENAASEKIKLERRLQEHQAL 132
++D+ + ERA + ++ + L +A+
Sbjct: 86 EDIDVLRAKAAKERAERRLQSQQDDIDFKRAELALKRAM 124
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil,
heptad repeat, stutter; 2.3A {Homo sapiens} SCOP:
h.1.20.1
Length = 84
Score = 24.8 bits (55), Expect = 9.7
Identities = 14/57 (24%), Positives = 25/57 (43%), Gaps = 15/57 (26%)
Query: 81 LRRMMKDMEG-----LQRAELDLANLQKELERARQEQENAASEKIKLERRLQEHQAL 132
L R M++ME + + LQ E++ ++E + R L+E+Q L
Sbjct: 13 LERQMREMEENFAVEAANYQDTIGRLQDEIQNMKEE----------MARHLREYQDL 59
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.129 0.364
Gapped
Lambda K H
0.267 0.0364 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,275,680
Number of extensions: 182981
Number of successful extensions: 955
Number of sequences better than 10.0: 1
Number of HSP's gapped: 862
Number of HSP's successfully gapped: 216
Length of query: 224
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 134
Effective length of database: 4,188,903
Effective search space: 561313002
Effective search space used: 561313002
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (26.0 bits)